Citrus Sinensis ID: 013316

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccccHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccHHHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHccccccccccEEEcccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHcHHHHHHHHHHHccHHHccccccEcccccEEEccccHHHHHHHHHHcccccHHcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHcccccccHHHHHHHHcccccccccHHHccHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEcHcccHEEccccHHHHHHHHHHHcccEEEEHHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqknqdrrsrsakpatihgcaqsGDLLAFQRLLRenpsllnernpvmaqtplhvsagYNKAEIVKSLlewpgndkveLEAQnmygetplhmaaKNGCNEAAKLLLAHGAFIeakanegktpldhlsngpgsAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGlkvgarrpphmaflgnpgtgkTMVARILGRLLYMVGilptdrvtevqrtdlvgefvghtgpktRRRIKEaeggilfvdeayrlipmqkaddkdYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTkffhfndfnSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRemngglvdpmlVNARENldlrlsfdcldtdeLRTITLEDLEAGLKLLLRLGI
Flexible Loop (DISEMBL)
mqknqdrrsrsakpatihgcaqsgDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALglkvgarrpphmaflgnpgtgkTMVARILGRLLYMVGILPTDrvtevqrtdlvgefvghtgpktrrrikeaeggilFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRremngglvdpmlVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Low Complexity Region (SEG)
MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITledleaglklllrlgI
Disordered region (IsUnstruct)
******************GCAQSGDLLAFQRLLRE**********VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA***********************LLLW***************************LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE*************GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL**
Disordered Region (DISOPRED)
******RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD**********************RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM******DYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL**
Disordered Region (DISEMBL)
***************TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Disordered Region (DISPRO)
************KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR*LEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
O22034	286	Protein cfxQ homolog OS=C	N/A	no	0.444	0.692	0.408	4e-37
O22025	293	Protein cfxQ homolog OS=C	N/A	no	0.444	0.675	0.403	5e-37
P49826	291	Protein cfxQ homolog OS=O	N/A	no	0.435	0.666	0.409	1e-35
P51228	301	Protein cfxQ homolog OS=P	N/A	no	0.444	0.657	0.412	2e-35
Q9TLY2	301	Protein cfxQ homolog OS=C	N/A	no	0.444	0.657	0.393	1e-34
Q9MS99	305	Protein cfxQ homolog OS=G	N/A	no	0.429	0.626	0.406	2e-34
P95648	309	Protein CbbX OS=Rhodobact	yes	no	0.611	0.880	0.350	3e-34
Q1XDQ9	300	Protein cfxQ homolog OS=P	N/A	no	0.444	0.66	0.398	6e-34
P27643	322	Stage V sporulation prote	yes	no	0.420	0.580	0.388	8e-34
P40118	317	Protein CbxX, chromosomal	yes	no	0.444	0.624	0.394	1e-33

>sp|O22034|CFXQ2_CYACA Protein cfxQ homolog OS=Cyanidium caldarium GN=cfxQ PE=3 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 129/208 (62%), Gaps = 10/208 (4%)

Query: 155 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLG 213
           ++ +  +D+L+ EL   +GL  +K ++R+ A  +L+D  R+ LGL   +  P  HM+F G
Sbjct: 12  TQIQQVLDDLDREL---IGLQAVKTRIREIAALLLVDRLRQKLGL--SSSNPGLHMSFTG 66

Query: 214 NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGIL 273
           +PGTGKT VA  +  +LY +G +    +  V R DLVG+++GHT PKT++ +K A GG+L
Sbjct: 67  SPGTGKTTVATKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTAPKTKQVLKNAMGGVL 126

Query: 274 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 331
           F+DEAY L   +  +++DYG EA+E ++ VM+  +  +V+IFAGY E M R  ASN G  
Sbjct: 127 FIDEAYYL--YRPDNERDYGAEAIEILLQVMENQRDDLVIIFAGYKEKMDRFYASNPGLS 184

Query: 332 RRVTKFFHFNDFNSEELAKILHIKMNNQ 359
            RV    +F D+  EEL  I  I +  Q
Sbjct: 185 SRVANHVNFPDYTPEELLMIGKIMLQEQ 212

Necessary for the expression of RuBisCO.
Cyanidium caldarium (taxid: 2771)

>sp|O22025|CFXQ_CYAME Protein cfxQ homolog OS=Cyanidioschyzon merolae GN=cfxQ PE=3 SV=2

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 129/208 (62%), Gaps = 10/208 (4%)

Query: 155 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLG 213
           ++ +  +D+L+ EL   +GL  +K ++R+ A  +L+D  R+ LGL   +  P  HM+F G
Sbjct: 19  TQIQEVLDDLDREL---IGLQTVKTRIREIAALLLVDRLRQKLGL--SSSNPGLHMSFTG 73

Query: 214 NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGIL 273
           +PGTGKT VAR +  +LY +G +    +  V R DLVG+++GHT PKT++ +K A GG+L
Sbjct: 74  SPGTGKTTVARKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTAPKTKQVLKNAMGGVL 133

Query: 274 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 331
           F+DEAY L   +  +++DYG EA+E ++ VM+  +  +V+IFAGY + M R   SN G  
Sbjct: 134 FIDEAYYL--YRPDNERDYGAEAIEILLQVMENQRDDLVIIFAGYKDKMDRFYTSNPGLA 191

Query: 332 RRVTKFFHFNDFNSEELAKILHIKMNNQ 359
            RV    +F D+  EEL  I  I +  Q
Sbjct: 192 SRVANHVNFPDYTPEELLMIGKIMLQEQ 219

Necessary for the expression of RuBisCO.

Cyanidioschyzon merolae (taxid: 45157)

>sp|P49826|CFXQ_ODOSI Protein cfxQ homolog OS=Odontella sinensis GN=cfxQ PE=3 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 11/205 (5%)

Query: 159 AKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP--HMAFLGNPG 216
           AK+  L NE   +VGL  +K ++R+ A  +L+D+ RK LG+  G+   P  HM+F G+PG
Sbjct: 20  AKILNLLNE--ELVGLVPVKSRIREIAALLLIDKLRKNLGITAGS---PGLHMSFTGSPG 74

Query: 217 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 276
           TGKT V   +  +L+ +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+D
Sbjct: 75  TGKTTVGLKMSDILFQLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFID 134

Query: 277 EAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRV 334
           EAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY EPM +   SN G   R+
Sbjct: 135 EAYYL--YKPDNERDYGSEAIEILLQVMENQRDDLVVILAGYKEPMDKFYESNPGLSSRI 192

Query: 335 TKFFHFNDFNSEELAKILHIKMNNQ 359
                F D+  EEL KI  + +  Q
Sbjct: 193 ANHIDFPDYTVEELLKISKMMLEEQ 217

Necessary for the expression of RuBisCO.

Odontella sinensis (taxid: 2839)

>sp|P51228|CFXQ_PORPU Protein cfxQ homolog OS=Porphyra purpurea GN=cfxQ PE=3 SV=1

 Score =  150 bits (380), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 129/206 (62%), Gaps = 8/206 (3%)

Query: 158 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 216
           K ++ E+ NEL+  ++GL  +K ++R+ A  +L+D  R+ L L V      HM+F G+PG
Sbjct: 22  KTQIQEVLNELNQELIGLVPVKTRIREIAALLLIDRLRRKLEL-VSGNPGLHMSFTGSPG 80

Query: 217 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 276
           TGKT VA  +  +L+ +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+D
Sbjct: 81  TGKTTVAMKMADILHRLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFID 140

Query: 277 EAYRLIPMQKADD-KDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 333
           EAY L    KAD+ +DYG EA+E ++ VM+  +  +VVIFAGY + M++   SN G   R
Sbjct: 141 EAYYLY---KADNERDYGSEAIEILLQVMENQRNDLVVIFAGYKDRMEKFYESNPGLSSR 197

Query: 334 VTKFFHFNDFNSEELAKILHIKMNNQ 359
           V     F D+ SEEL +I  + +  Q
Sbjct: 198 VANHVDFPDYTSEELLQIAKMMIEEQ 223

Necessary for the expression of RuBisCO.

Porphyra purpurea (taxid: 2787)

>sp|Q9TLY2|CFXQ1_CYACA Protein cfxQ homolog OS=Cyanidium caldarium GN=cfxQ PE=3 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 127/206 (61%), Gaps = 8/206 (3%)

Query: 158 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNP 215
           K K+ E+ ++L+  ++GL  +K ++R+ A  +L+D  R+ +GL   +  P  HM+F G P
Sbjct: 25  KTKIQEVLDDLNQELIGLKPVKNRIREIAALLLVDRLRQKVGL--SSSNPGLHMSFTGPP 82

Query: 216 GTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFV 275
           GTGKT VA  +  +LY +  +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+
Sbjct: 83  GTGKTTVATKMADILYKLNYIKKGHLVTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFI 142

Query: 276 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 333
           DEAY L   +  +++DYG EA+E ++ VM+  +  +V+IFAGY E M +  ASN G   R
Sbjct: 143 DEAYYL--YKPDNERDYGSEAIEILLQVMENQREDLVIIFAGYKEKMDKFYASNPGLASR 200

Query: 334 VTKFFHFNDFNSEELAKILHIKMNNQ 359
           V     F ++  EEL KI  + +  Q
Sbjct: 201 VANHVDFPEYRPEELLKIAEMMLQEQ 226

Necessary for the expression of RuBisCO.

Cyanidium caldarium (taxid: 2771)

>sp|Q9MS99|CFXQ_GALSU Protein cfxQ homolog OS=Galdieria sulphuraria GN=cfxQ PE=3 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 124/197 (62%), Gaps = 6/197 (3%)

Query: 158 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 216
           K K+ E+ N+L   ++GL  +K ++++ A  +L+D+ R  L L   A    HM+F G+PG
Sbjct: 28  KTKIQEVLNQLDKELIGLTPVKNRIKEIAALLLIDKLRIKLNLP-QANPGLHMSFTGSPG 86

Query: 217 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 276
           TGKT VA  +  +LY++G +    +  V R DLVG+++GHT PKT+  +K A GG+LF+D
Sbjct: 87  TGKTTVATKMADILYLLGYIRKGHLLTVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFID 146

Query: 277 EAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRV 334
           EAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY + M+R   SN G   R+
Sbjct: 147 EAYYL--YKPDNERDYGSEAIEILLQVMENQRNDLVVILAGYKDKMERFYQSNPGLSSRI 204

Query: 335 TKFFHFNDFNSEELAKI 351
           T    F D+ +EEL +I
Sbjct: 205 TNHVDFPDYTAEELLEI 221

Necessary for the expression of RuBisCO.

Galdieria sulphuraria (taxid: 130081)

>sp|P95648|CBBX_RHOSH Protein CbbX OS=Rhodobacter sphaeroides GN=cbbX PE=1 SV=1

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 154/291 (52%), Gaps = 19/291 (6%)

Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 207
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 14  RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67

Query: 208 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
            HM+F GNPGTGKT VA  +  LL+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 68  LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127

Query: 267 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 324
            A GG+LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY++ M+   
Sbjct: 128 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185

Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384
            SN GF  R+     F D++ EEL +I    +++Q      Y     +  ++ A   L  
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----YQMTPEAETALRAYIGLRR 240

Query: 385 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 435
            +      R +   L    L  A  N     S   LD   L T+  ED+ A
Sbjct: 241 NQPHFANARSIRNALDRARLRQA--NRLFTASSGPLDARALSTMAEEDIRA 289

Seems to be necessary for the expression of RuBisCO.

Rhodobacter sphaeroides (taxid: 1063)

>sp|Q1XDQ9|CFXQ_PORYE Protein cfxQ homolog OS=Porphyra yezoensis GN=cfxQ PE=3 SV=1

 Score =  145 bits (366), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 128/206 (62%), Gaps = 8/206 (3%)

Query: 158 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 216
           + ++ E+ NEL+  ++GL  +K ++R+ A  +L+D  R+ L L V      HM+F G+PG
Sbjct: 21  RTQIQEVLNELNQELIGLVPVKTRIREIAALLLIDRLRRKLEL-VSGNPGLHMSFTGSPG 79

Query: 217 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 276
           TGKT VA  +  +L+ +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+D
Sbjct: 80  TGKTTVAMKMADILHRLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFID 139

Query: 277 EAYRLIPMQKAD-DKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 333
           EAY L    KAD ++DY  EA+E ++ VM+  +  +VVIFAGY + M++   SN G   R
Sbjct: 140 EAYYLY---KADNERDYDSEAIEILLQVMENQRNDLVVIFAGYKDRMEKFYESNPGLSSR 196

Query: 334 VTKFFHFNDFNSEELAKILHIKMNNQ 359
           V     F D+ S+EL +I  + +  Q
Sbjct: 197 VANHVDFPDYTSDELLQIAKMMIEEQ 222

Necessary for the expression of RuBisCO.

Porphyra yezoensis (taxid: 2788)

>sp|P27643|SP5K_BACSU Stage V sporulation protein K OS=Bacillus subtilis (strain 168) GN=spoVK PE=2 SV=3

 Score =  145 bits (365), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 121/193 (62%), Gaps = 6/193 (3%)

Query: 161 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKT 220
           + E+E E+S +VG+ E+K  +++    + ++++R   GLKVG ++  HM F GNPGTGKT
Sbjct: 48  LKEIEKEMSALVGMEEMKRNIKEIYAWIFVNQKRAEQGLKVG-KQALHMMFKGNPGTGKT 106

Query: 221 MVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYR 280
            VAR++G+L + + +L    + E +R DLVGE++GHT  KTR  IK++ GGILF+DEAY 
Sbjct: 107 TVARLIGKLFFEMNVLSKGHLIEAERADLVGEYIGHTAQKTRDLIKKSLGGILFIDEAYS 166

Query: 281 LIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRVTKFF 338
           L    +  +KD+G EA++ ++  M+  +   ++I AGYS  M   ++ N G   R     
Sbjct: 167 L---ARGGEKDFGKEAIDTLVKHMEDKQHEFILILAGYSREMDHFLSLNPGLQSRFPISI 223

Query: 339 HFNDFNSEELAKI 351
            F D++  +L +I
Sbjct: 224 DFPDYSVTQLMEI 236

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P40118|CBXXC_CUPNH Protein CbxX, chromosomal OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbxXC PE=3 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 124/208 (59%), Gaps = 10/208 (4%)

Query: 153 ACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAF 211
           A S     + +L+ EL   +GL  +K ++R  A  +L+D+ R A G   GA  P  HM F
Sbjct: 29  ASSGITELLAQLDREL---IGLKPVKARIRDIAALLLVDKLRAARGFSAGA--PSLHMCF 83

Query: 212 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 271
            GNPGTGKT VA  + ++L+ +G +    +  V R DLVG+++GHT PKT+  +K+A GG
Sbjct: 84  TGNPGTGKTTVAMRMAQILHQLGYVRRGHLVAVTRDDLVGQYIGHTAPKTKEILKKAMGG 143

Query: 272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEG 329
           +LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY + M R   SN G
Sbjct: 144 VLFIDEAYYL--YRPENERDYGQEAIEILLQVMENNRDDLVVILAGYKDRMDRFFESNPG 201

Query: 330 FCRRVTKFFHFNDFNSEELAKILHIKMN 357
              RV     F D+  +EL +I  + ++
Sbjct: 202 MSSRVAHHVDFPDYQLDELRQIADLMLS 229

Seems to be necessary for the expression of RuBisCO.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
225445236	484	PREDICTED: caseinolytic peptidase B prot	0.988	0.909	0.784	0.0
255546479	481	Protein cbxX, chromosomal, putative [Ric	0.977	0.904	0.794	0.0
356520543	480	PREDICTED: protein CbxX, chromosomal-lik	0.984	0.912	0.774	0.0
356531267	484	PREDICTED: protein CbxX, chromosomal-lik	0.984	0.904	0.768	0.0
357500765	479	Ankyrin repeat domain-containing protein	0.988	0.918	0.763	0.0
224119764	478	predicted protein [Populus trichocarpa]	0.988	0.920	0.767	0.0
449459838	479	PREDICTED: ESX-1 secretion system protei	0.988	0.918	0.761	0.0
224143544	477	predicted protein [Populus trichocarpa]	0.986	0.920	0.759	0.0
18404228	481	AAA-type ATPase family protein / ankyrin	0.986	0.912	0.733	0.0
21553510	481	rubisco expression protein, putative [Ar	0.986	0.912	0.733	0.0

>gi|225445236|ref|XP_002280965.1| PREDICTED: caseinolytic peptidase B protein homolog [Vitis vinifera] gi|297738825|emb|CBI28070.3| unnamed protein product [Vitis vinifera]

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/477 (78%), Positives = 413/477 (86%), Gaps = 37/477 (7%)

Query: 1   MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
           MQ+  D+RSRS+KP TIHGCAQSGDLLA Q+LLR NPSLLN+RNPVMAQTPLHVS+GYN 
Sbjct: 1   MQRPLDQRSRSSKPTTIHGCAQSGDLLALQKLLRGNPSLLNDRNPVMAQTPLHVSSGYNN 60

Query: 61  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN---- 116
            EIVK LL W G +KVELEA+NMYGETPLHMAAKNGCN AA+LLLAHGA +EAKAN    
Sbjct: 61  VEIVKFLLNWQGPEKVELEAKNMYGETPLHMAAKNGCNAAAQLLLAHGAIVEAKANNGMT 120

Query: 117 ---------------------------------EGKTPLDHLSNGPGSAKLRELLLWHSE 143
                                            EG TPL+HLS GPGS KLRELL  + +
Sbjct: 121 PLHLAVWYSLRAEDCSTVKTLLDYNADCSSKDNEGMTPLNHLSQGPGSEKLRELLHRYLD 180

Query: 144 EQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA 203
           EQ KRRALEACSETKAKMDELE+ LSNIVGL++LK QLR+WAKGMLLDERRKALGLKVG+
Sbjct: 181 EQIKRRALEACSETKAKMDELEDALSNIVGLNDLKSQLRRWAKGMLLDERRKALGLKVGS 240

Query: 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR 263
           R+PPHMAFLGNPGTGKTMVAR+LGRLL+MVG+LPTD+VTEVQRTDLVGEFVGHTGPKTRR
Sbjct: 241 RKPPHMAFLGNPGTGKTMVARVLGRLLHMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTRR 300

Query: 264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 323
           +IKEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GKVVVIFAGYSEPMKRV
Sbjct: 301 KIKEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKVVVIFAGYSEPMKRV 360

Query: 324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 383
           I+SNEGFCRRVTKFFHF DFNS+ELAKIL++KMNNQTEDSLLYGF+LH SCS+D++AALI
Sbjct: 361 ISSNEGFCRRVTKFFHFGDFNSQELAKILNLKMNNQTEDSLLYGFRLHPSCSVDSVAALI 420

Query: 384 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
           E+ETTEKQR+EMNGGLVDPMLVNARENLDLRLSF+C+DTDEL TIT+EDLEAGL LL
Sbjct: 421 ERETTEKQRKEMNGGLVDPMLVNARENLDLRLSFECIDTDELLTITIEDLEAGLSLL 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546479|ref|XP_002514299.1| Protein cbxX, chromosomal, putative [Ricinus communis] gi|223546755|gb|EEF48253.1| Protein cbxX, chromosomal, putative [Ricinus communis]

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/473 (79%), Positives = 407/473 (86%), Gaps = 38/473 (8%)

Query: 6   DRRSRSAKP-ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
           D+RSRS+K   TIHG AQSGDLLAFQ+LLR NPSLLNERNPVMAQTPLHVSAG N+AEIV
Sbjct: 7   DQRSRSSKQVTTIHGFAQSGDLLAFQKLLRVNPSLLNERNPVMAQTPLHVSAGNNRAEIV 66

Query: 65  KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------- 116
           K+LLEW G +KVELEA+NMYGETPLHMAAKNGCNEAA+LLLAHGAF+E+KAN        
Sbjct: 67  KTLLEWQGPEKVELEAKNMYGETPLHMAAKNGCNEAARLLLAHGAFVESKANNGMTPLHL 126

Query: 117 -----------------------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 147
                                        EG TP++HLS GPGS KLR+LL WH +EQRK
Sbjct: 127 AVWYSIRSDDFSTVKTLLEYNADCSAKDNEGMTPMNHLSRGPGSEKLRQLLQWHIDEQRK 186

Query: 148 RRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP 207
           RRALEACSETKAKM+ELEN LSNIVGLHELKIQLRKWAKGMLLDERR ALGLKVG RRPP
Sbjct: 187 RRALEACSETKAKMEELENALSNIVGLHELKIQLRKWAKGMLLDERRMALGLKVGVRRPP 246

Query: 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE 267
           HMAFLGNPGTGKTMVARILGRLL++VGILPTDRVTEVQRTDLVGEFVGHTGPKTR++IKE
Sbjct: 247 HMAFLGNPGTGKTMVARILGRLLHLVGILPTDRVTEVQRTDLVGEFVGHTGPKTRKKIKE 306

Query: 268 AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASN 327
           AEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GKVVVIFAGYS+PMKRVIASN
Sbjct: 307 AEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKVVVIFAGYSKPMKRVIASN 366

Query: 328 EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 387
           EGFCRRVTKFF F+DF  E+LAKI+HIKMNNQ ED LLYGF LHS CSM+AIA LIE++T
Sbjct: 367 EGFCRRVTKFFQFDDFTPEDLAKIIHIKMNNQEEDGLLYGFNLHSKCSMEAIAKLIERKT 426

Query: 388 TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
           TEKQR+EMNGGL D MLVNARENLD RL FDC+DT+ELRTITLEDLEAGL+LL
Sbjct: 427 TEKQRKEMNGGLADTMLVNARENLDSRLDFDCIDTEELRTITLEDLEAGLRLL 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520543|ref|XP_003528921.1| PREDICTED: protein CbxX, chromosomal-like [Glycine max]

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/475 (77%), Positives = 406/475 (85%), Gaps = 37/475 (7%)

Query: 3   KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE 62
           ++QD+RSR AKPATIHGCA SGDL+  QRLLR+NPSLLNERNPVMAQTPLHVSAG+N+ E
Sbjct: 4   RSQDQRSRPAKPATIHGCALSGDLVGLQRLLRDNPSLLNERNPVMAQTPLHVSAGHNRTE 63

Query: 63  IVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN------ 116
           IVK LL+W G DKVE+EA+NMYGETPLHMAAKNGCNEAA+LLLA GA +EA+AN      
Sbjct: 64  IVKFLLDWQGTDKVEMEAKNMYGETPLHMAAKNGCNEAAQLLLACGATVEARANNGMTPL 123

Query: 117 -------------------------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145
                                          EG TPL+HLS GPG+ KLRELLLWH EEQ
Sbjct: 124 HLAVWYSLRAEEFLTVKTLLEYNADCSAKDDEGMTPLNHLSQGPGTEKLRELLLWHLEEQ 183

Query: 146 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 205
           RK+RA+EACSETKAKMDELE ELSNIVGL++LK+QLRKWAKGMLLDE+R++LGL VG RR
Sbjct: 184 RKQRAIEACSETKAKMDELEKELSNIVGLNDLKVQLRKWAKGMLLDEKRRSLGLHVGRRR 243

Query: 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI 265
           PPHMAFLGNPGTGKTMVARILG+LL+MVGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+I
Sbjct: 244 PPHMAFLGNPGTGKTMVARILGKLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRKI 303

Query: 266 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 325
           KEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+VVIFAGY EPMKRVIA
Sbjct: 304 KEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKIVVIFAGYCEPMKRVIA 363

Query: 326 SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 385
           SNEGFCRRVTKFF FNDFNSEELA+ILHIKMNN  EDSLLYGF LH  C + A+AALIE+
Sbjct: 364 SNEGFCRRVTKFFQFNDFNSEELAQILHIKMNNLAEDSLLYGFMLHPDCCIKALAALIER 423

Query: 386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
           ETTEKQR+E NGGLVD MLVNARENLDLRLSFDC+DT+EL TITL DLEAGL+ L
Sbjct: 424 ETTEKQRKETNGGLVDTMLVNARENLDLRLSFDCMDTEELLTITLVDLEAGLQQL 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531267|ref|XP_003534199.1| PREDICTED: protein CbxX, chromosomal-like [Glycine max]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/475 (76%), Positives = 408/475 (85%), Gaps = 37/475 (7%)

Query: 3   KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE 62
           ++QD+RSR AK ATIHGCA SGDL+  QRLLR+NPSLLNERNPVMAQTPLHVSAG+N+ E
Sbjct: 8   RSQDQRSRPAKAATIHGCALSGDLVGLQRLLRDNPSLLNERNPVMAQTPLHVSAGHNRTE 67

Query: 63  IVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN------ 116
           IVK LL+W G DKVE+EA+NMYGETPLHMAAKNGCN+AA+LLLA GA +EA+AN      
Sbjct: 68  IVKFLLDWQGADKVEMEAKNMYGETPLHMAAKNGCNKAAQLLLARGAIVEARANNGMTPL 127

Query: 117 -------------------------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145
                                          EG TPL+HLS GPG+ KLRELLLWH EEQ
Sbjct: 128 HLAVWYSLRAEEFLTVKTLLEYNADCSAKDDEGMTPLNHLSQGPGTEKLRELLLWHLEEQ 187

Query: 146 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 205
           RK+RA+EACSETKAKMDELE +LSNIVGL++LK+QLRKWAKGMLLDE+R++LGL VG RR
Sbjct: 188 RKQRAIEACSETKAKMDELEKQLSNIVGLNDLKVQLRKWAKGMLLDEKRRSLGLHVGRRR 247

Query: 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI 265
           PPHMAFLGNPGTGKTMVARILG+LL+ VGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+I
Sbjct: 248 PPHMAFLGNPGTGKTMVARILGKLLHTVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRKI 307

Query: 266 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 325
           KEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+VVIFAGYS+PMKRVI 
Sbjct: 308 KEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKIVVIFAGYSKPMKRVIT 367

Query: 326 SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 385
           SNEGFCRRVTKFF FNDFNSEELA+ILHIKMNN  EDSLLYGFKLH+ CS+ ++AALIE+
Sbjct: 368 SNEGFCRRVTKFFQFNDFNSEELAQILHIKMNNLAEDSLLYGFKLHTDCSIKSLAALIER 427

Query: 386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
           ETTEKQR+E NGGLVD MLVNARENLDLRLSFDC+DT+EL TITL DLEAGL+LL
Sbjct: 428 ETTEKQRQETNGGLVDTMLVNARENLDLRLSFDCMDTEELLTITLVDLEAGLQLL 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500765|ref|XP_003620671.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355495686|gb|AES76889.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/477 (76%), Positives = 407/477 (85%), Gaps = 37/477 (7%)

Query: 1   MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
           M ++QD+RSR AKPATIH CA SGDL+  Q+LLR+NPSLLN++NPVMA TPLHVSAG N+
Sbjct: 1   MNRSQDQRSRPAKPATIHSCALSGDLIGLQKLLRDNPSLLNDKNPVMAHTPLHVSAGNNR 60

Query: 61  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN---- 116
           A+IVK LLEW G+++VE+EA+NMYGETPLHMAAKNGC+EAA+LLLAHGA IEA+AN    
Sbjct: 61  ADIVKFLLEWQGSERVEIEAKNMYGETPLHMAAKNGCSEAAQLLLAHGASIEARANNGMT 120

Query: 117 ---------------------------------EGKTPLDHLSNGPGSAKLRELLLWHSE 143
                                            EG TPL+HLS GPG+ KLRELL WH E
Sbjct: 121 PLHLAVWHSLRAEEFLTVKTLLEHNADCSAKDNEGMTPLNHLSQGPGNDKLRELLNWHLE 180

Query: 144 EQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA 203
           EQRKRRA++ACSETKAKMDELE ELSNIVGL++LKIQLRKWAKGMLLDERR+ALGL VG 
Sbjct: 181 EQRKRRAIKACSETKAKMDELEKELSNIVGLNDLKIQLRKWAKGMLLDERRRALGLHVGT 240

Query: 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR 263
           RRPPHMAFLGNPGTGKTMVARILGRLL+MVGILPTD+VTEVQRTDLVGEFVGHTGPKTR+
Sbjct: 241 RRPPHMAFLGNPGTGKTMVARILGRLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRK 300

Query: 264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 323
           +I+EAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+VVIFAGYSEPMKRV
Sbjct: 301 KIQEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKIVVIFAGYSEPMKRV 360

Query: 324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 383
           IASNEGFCRRVTKFFHF DF+S ELA ILHIKMNN  E SLLYGFKLHS+CS+ AI ALI
Sbjct: 361 IASNEGFCRRVTKFFHFIDFSSAELATILHIKMNNLAEGSLLYGFKLHSNCSIKAIEALI 420

Query: 384 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
           ++ETTEKQR+E NGGLVD M++NARENLDLRLSFDC+DT+EL TITLEDLEAGL  L
Sbjct: 421 QRETTEKQRKETNGGLVDTMMINARENLDLRLSFDCIDTEELLTITLEDLEAGLGFL 477

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119764|ref|XP_002331155.1| predicted protein [Populus trichocarpa] gi|222873238|gb|EEF10369.1| predicted protein [Populus trichocarpa]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/478 (76%), Positives = 403/478 (84%), Gaps = 38/478 (7%)

Query: 1   MQKN-QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN 59
           MQ+N Q + SR +KPATIH CAQSGDLL FQRLL  NP LLNERNPVMAQTPLHVSAGYN
Sbjct: 1   MQRNRQGQGSRISKPATIHSCAQSGDLLGFQRLLSGNPYLLNERNPVMAQTPLHVSAGYN 60

Query: 60  KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN--- 116
           +AEI+K LL+W G +KVELE +NMYGETPLHMAAKNGC+EAA+LLLAHGA IEAKAN   
Sbjct: 61  RAEIIKFLLDWQGAEKVELEPRNMYGETPLHMAAKNGCSEAARLLLAHGAIIEAKANNGM 120

Query: 117 ----------------------------------EGKTPLDHLSNGPGSAKLRELLLWHS 142
                                             EG TPL+HLS GP S +L +LL WH 
Sbjct: 121 TPLHLAVWYSIRVEDHSTVKTLLEYNADCSAEDNEGMTPLNHLSPGPRSEELCKLLQWHL 180

Query: 143 EEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVG 202
           EEQRKR+ALEACS+TKAKMDELE+ LSN+VGLH+LKIQLRKWAKGMLLDERR+ALG+KVG
Sbjct: 181 EEQRKRKALEACSKTKAKMDELEDALSNVVGLHDLKIQLRKWAKGMLLDERRRALGMKVG 240

Query: 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR 262
            RRPPHMAFLG+PGTGKTMVARILGRLL+MVG+LPTD+VTEVQRTDLVGEFVGHTGPKTR
Sbjct: 241 LRRPPHMAFLGSPGTGKTMVARILGRLLHMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTR 300

Query: 263 RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKR 322
           R+I EAEGGILFVDEAYRLIP QK D+KDYGIEALEEIMSVMD GKVVVIFAGYSEPMKR
Sbjct: 301 RKIAEAEGGILFVDEAYRLIPSQKQDEKDYGIEALEEIMSVMDSGKVVVIFAGYSEPMKR 360

Query: 323 VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 382
           VI+SNEGFCRRVTKFFHFNDF+SE+LA I HIKMNNQ E S LYGFKLHSSCS DAIAAL
Sbjct: 361 VISSNEGFCRRVTKFFHFNDFSSEDLANICHIKMNNQDEGSSLYGFKLHSSCSGDAIAAL 420

Query: 383 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
           I++ETTEKQRREMNGGLV+ ML NARE LDLRL F+C+DTDEL+TITLEDLEAG +LL
Sbjct: 421 IKRETTEKQRREMNGGLVNVMLTNARETLDLRLDFNCIDTDELQTITLEDLEAGCQLL 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459838|ref|XP_004147653.1| PREDICTED: ESX-1 secretion system protein EccA1-like [Cucumis sativus] gi|449498823|ref|XP_004160644.1| PREDICTED: ESX-1 secretion system protein EccA1-like [Cucumis sativus]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/477 (76%), Positives = 404/477 (84%), Gaps = 37/477 (7%)

Query: 1   MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
           MQK QD+R RS KP TIHG AQSGD+L+ Q+LLRENP LLNERNP M QTPLHVSAGYN+
Sbjct: 1   MQKPQDQRLRSTKPTTIHGYAQSGDILSLQKLLRENPGLLNERNPFMGQTPLHVSAGYNR 60

Query: 61  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN---- 116
           AEIV  LL W G + VELEA+NMYGETPLHMAAKNGCN+AA++LLAHGAF+EAKAN    
Sbjct: 61  AEIVTFLLAWKGPENVELEAKNMYGETPLHMAAKNGCNDAARVLLAHGAFVEAKANNGMT 120

Query: 117 ---------------------------------EGKTPLDHLSNGPGSAKLRELLLWHSE 143
                                            EG TPL+HLS    S KLRELL  H E
Sbjct: 121 PLHLAVWYSLQSEDCETVKTLLDYNADCSATDEEGMTPLNHLSQSSCSKKLRELLNRHLE 180

Query: 144 EQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA 203
           EQRK++A+EACSETKAKM ELENELS+IVGLHELKIQL+KWAKGMLLDERR+ALGLKVG 
Sbjct: 181 EQRKQKAIEACSETKAKMKELENELSHIVGLHELKIQLQKWAKGMLLDERRRALGLKVGT 240

Query: 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR 263
           RR PHMAFLGNPGTGKTMVARILG+LL+MVGILPTD+VTEVQRTDLVGEFVGHTGPKTRR
Sbjct: 241 RRSPHMAFLGNPGTGKTMVARILGKLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRR 300

Query: 264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 323
           +IKEAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+VVIFAGY EPMKRV
Sbjct: 301 KIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKIVVIFAGYCEPMKRV 360

Query: 324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 383
           I SNEGF RRVTKFF+FNDF+S+ELA ILHIKM+NQTEDSLLYGFKLH +C+++AI+ LI
Sbjct: 361 IDSNEGFHRRVTKFFYFNDFSSKELANILHIKMDNQTEDSLLYGFKLHPTCTIEAISDLI 420

Query: 384 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
           E+ET EK+R+EMNGGLVDPMLVNARENLD RLSF+C+DT+ELRTIT+EDLEAGL+LL
Sbjct: 421 ERETEEKRRKEMNGGLVDPMLVNARENLDGRLSFECIDTEELRTITMEDLEAGLRLL 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143544|ref|XP_002324992.1| predicted protein [Populus trichocarpa] gi|222866426|gb|EEF03557.1| predicted protein [Populus trichocarpa]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/478 (75%), Positives = 404/478 (84%), Gaps = 39/478 (8%)

Query: 1   MQKN-QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN 59
           MQ++ QD  SRS+KPATIH  AQSGDLL FQRLLR +PSLLNERNPVMAQTPLHVSAGYN
Sbjct: 1   MQRDRQDHGSRSSKPATIHSYAQSGDLLGFQRLLRGDPSLLNERNPVMAQTPLHVSAGYN 60

Query: 60  KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN--- 116
           +A+I+K LL+W G +KVELE +NM  +TPLHMAAKNGC EAA+LLLAHGAF+EAKAN   
Sbjct: 61  RADIIKFLLDWQGAEKVELEPRNM-AKTPLHMAAKNGCTEAARLLLAHGAFVEAKANNGM 119

Query: 117 ----------------------------------EGKTPLDHLSNGPGSAKLRELLLWHS 142
                                             EG TPL+HLS GPGS ++R+LL WH 
Sbjct: 120 TPLHLAVWYSIRAEDHSTVKTLLEYNADCSAEDNEGMTPLNHLSPGPGSEEVRKLLHWHL 179

Query: 143 EEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVG 202
           EEQRKR+ALEACS+TKAKMDELE+ L+N+VGLHELK+QLRKWAKGMLLDERR+ALG+KVG
Sbjct: 180 EEQRKRKALEACSKTKAKMDELEDALTNVVGLHELKVQLRKWAKGMLLDERRRALGMKVG 239

Query: 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR 262
            RRPPHMAFLG+PGTGKTMVARILGRLL+MVG+LPTD+VTEVQRTDLVGEFVGHTGPKTR
Sbjct: 240 MRRPPHMAFLGSPGTGKTMVARILGRLLHMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTR 299

Query: 263 RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKR 322
           R+I EAEGGILFVDEAYRLIP QK DDKDYGIEALEEIMSVMD GKVVVIFAGYSEPMKR
Sbjct: 300 RKIAEAEGGILFVDEAYRLIPSQKEDDKDYGIEALEEIMSVMDSGKVVVIFAGYSEPMKR 359

Query: 323 VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 382
           VI+SNEGFCRRVTKFFHFNDF+S++LA I HI MN Q E S LYGFKLH SC +DAIAAL
Sbjct: 360 VISSNEGFCRRVTKFFHFNDFSSKDLANICHINMNTQDEGSPLYGFKLHPSCCVDAIAAL 419

Query: 383 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
           IE+ETTEKQRREMNGGLV+ ML NARENLDLRL F+CLDTDEL+TIT+EDLEAGL+LL
Sbjct: 420 IERETTEKQRREMNGGLVNTMLANARENLDLRLDFNCLDTDELQTITIEDLEAGLQLL 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404228|ref|NP_566752.1| AAA-type ATPase family protein / ankyrin repeat family protein [Arabidopsis thaliana] gi|13507553|gb|AAK28639.1|AF360342_1 putative rubisco expression protein [Arabidopsis thaliana] gi|15293291|gb|AAK93756.1| putative rubisco expression protein [Arabidopsis thaliana] gi|332643395|gb|AEE76916.1| AAA-type ATPase family protein / ankyrin repeat family protein [Arabidopsis thaliana]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/476 (73%), Positives = 388/476 (81%), Gaps = 37/476 (7%)

Query: 2   QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA 61
           Q    +R RSA+P TIH CA SGDL+A QRLL++NPSLLNERNPVM  TPLHVSAG    
Sbjct: 4   QNGGGQRLRSARPTTIHDCALSGDLIALQRLLKDNPSLLNERNPVMYHTPLHVSAGNGNV 63

Query: 62  EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA------ 115
           +IVK LL W G+DKVELEA N YGETPLHMAAKNGCNEAAKLLL  GAFIEAKA      
Sbjct: 64  DIVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAAKLLLESGAFIEAKASNGMTP 123

Query: 116 -------------------------------NEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
                                          NEG TPLDHL  G GS KLRELL W  +E
Sbjct: 124 LHLAVWYSITAKEISTVKTLLDHNADCSAKDNEGMTPLDHLPQGQGSEKLRELLRWFLQE 183

Query: 145 QRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGAR 204
           QRKR ALE C +TKAKM+ LE+ELSNIVGL ELK QLRKWAKGMLLDERR+ALGL +G R
Sbjct: 184 QRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTR 243

Query: 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR 264
           RPPHMAFLGNPGTGKTMVAR+LG+LL  VGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+
Sbjct: 244 RPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRK 303

Query: 265 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVI 324
           I+EAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+VVIFAGYSEPMKRVI
Sbjct: 304 IQEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGKIVVIFAGYSEPMKRVI 363

Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384
           ASNEGFCRRVTKFF+F+DF+++ELA+ILHIKMNNQ ED+L YGF+LH SC++  IA+LIE
Sbjct: 364 ASNEGFCRRVTKFFNFSDFSAKELAQILHIKMNNQGEDTLFYGFRLHESCTLQEIASLIE 423

Query: 385 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
            ETTEKQR+EMNGGLVD +LVNARENLDLRLSF+C+DT+E+ TI LEDLEAGL++ 
Sbjct: 424 AETTEKQRKEMNGGLVDTLLVNARENLDLRLSFECVDTEEICTIKLEDLEAGLRVF 479

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553510|gb|AAM62603.1| rubisco expression protein, putative [Arabidopsis thaliana]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/476 (73%), Positives = 388/476 (81%), Gaps = 37/476 (7%)

Query: 2   QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA 61
           Q    +R RSA+P TIH CA SGDL+A QRLLR+NPSLLNERNPVM  TPLHVSAG    
Sbjct: 4   QNGGGQRLRSARPTTIHDCALSGDLIALQRLLRDNPSLLNERNPVMYHTPLHVSAGNGNV 63

Query: 62  EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA------ 115
           +IVK LL W G+DKVELEA N YGETPLHMAAKNGCNEAAKLLL  GAFIEAKA      
Sbjct: 64  DIVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAAKLLLESGAFIEAKASNGMTP 123

Query: 116 -------------------------------NEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
                                          NEG TPLDHL  G GS KLRELL W  +E
Sbjct: 124 LHLAVWYSITAKEISTVKTLLDHNADCSAKDNEGMTPLDHLPQGQGSEKLRELLRWFLQE 183

Query: 145 QRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGAR 204
           QRKR ALE C +TKAKM+ LE+ELSNIVGL ELK QLRKWAKGMLLDERR+ALGL +G R
Sbjct: 184 QRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTR 243

Query: 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR 264
           RPPHMAFLGNPGTGKTMVAR+LG+LL  VGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+
Sbjct: 244 RPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRK 303

Query: 265 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVI 324
           I+EAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSV+D GK+VVIFAGYSEPMKRVI
Sbjct: 304 IQEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVIDTGKIVVIFAGYSEPMKRVI 363

Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384
           ASNEGFCRRVTKFF+F+DF+++ELA+ILHIKMNNQ ED+L YGF+LH SC++  IA+LIE
Sbjct: 364 ASNEGFCRRVTKFFNFSDFSAKELAQILHIKMNNQGEDTLFYGFRLHESCTLQEIASLIE 423

Query: 385 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440
            ETTEKQR+EMNGGLVD +LVNARENLDLRLSF+C+DT+E+ TI LEDLEAGL++ 
Sbjct: 424 AETTEKQRKEMNGGLVDTLLVNARENLDLRLSFECVDTEEICTIKLEDLEAGLRVF 479

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2091702	481	AT3G24530 [Arabidopsis thalian	0.844	0.781	0.734	1.1e-144
UNIPROTKB|Q81WX4	318	spoVK "Stage V sporulation pro	0.433	0.606	0.386	3.2e-33
TIGR_CMR|BA_3839	318	BA_3839 "stage V sporulation p	0.433	0.606	0.386	3.2e-33
UNIPROTKB|O53687	631	eccA3 "ESX-3 secretion system	0.579	0.408	0.343	2.9e-32
UNIPROTKB|O69733	573	eccA1 "ESX-1 secretion system	0.586	0.455	0.332	1.8e-31
TIGR_CMR|CHY_1391	296	CHY_1391 "stage V sporulation	0.415	0.625	0.397	1.6e-29
ASPGD|ASPL0000069352	2310	AN7246 [Emericella nidulans (t	0.469	0.090	0.292	7.6e-18
UNIPROTKB|P63744	610	eccA5 "ESX-5 secretion system	0.496	0.362	0.276	1.6e-15
UNIPROTKB|G4NES4	703	MGG_11680 "AAA family ATPase"	0.492	0.311	0.293	6.6e-14
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.298	0.703	0.348	2.2e-09

TAIR|locus:2091702 AT3G24530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 282/384 (73%), Positives = 318/384 (82%)

Query:    49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN----EAAKLL 104
             +TPLH++A     E  K LLE      +E +A N  G TPLH+A             K L
Sbjct:    88 ETPLHMAAKNGCNEAAKLLLE--SGAFIEAKASN--GMTPLHLAVWYSITAKEISTVKTL 143

Query:   105 LAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDEL 164
             L H A   AK NEG TPLDHL  G GS KLRELL W  +EQRKR ALE C +TKAKM+ L
Sbjct:   144 LDHNADCSAKDNEGMTPLDHLPQGQGSEKLRELLRWFLQEQRKRSALEQCGKTKAKMELL 203

Query:   165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVAR 224
             E+ELSNIVGL ELK QLRKWAKGMLLDERR+ALGL +G RRPPHMAFLGNPGTGKTMVAR
Sbjct:   204 EDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTRRPPHMAFLGNPGTGKTMVAR 263

Query:   225 ILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 284
             +LG+LL  VGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+I+EAEGGILFVDEAYRLIPM
Sbjct:   264 VLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRKIQEAEGGILFVDEAYRLIPM 323

Query:   285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN 344
             QKADDKDYG+EALEEIMSVMD GK+VVIFAGYSEPMKRVIASNEGFCRRVTKFF+F+DF+
Sbjct:   324 QKADDKDYGLEALEEIMSVMDTGKIVVIFAGYSEPMKRVIASNEGFCRRVTKFFNFSDFS 383

Query:   345 SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPML 404
             ++ELA+ILHIKMNNQ ED+L YGF+LH SC++  IA+LIE ETTEKQR+EMNGGLVD +L
Sbjct:   384 AKELAQILHIKMNNQGEDTLFYGFRLHESCTLQEIASLIEAETTEKQRKEMNGGLVDTLL 443

Query:   405 VNARENLDLRLSFDCLDTDELRTI 428
             VNARENLDLRLSF+C+DT+E+ TI
Sbjct:   444 VNARENLDLRLSFECVDTEEICTI 467

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019538 "protein metabolic process" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q81WX4 spoVK "Stage V sporulation protein K" [Bacillus anthracis (taxid:1392)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 78/202 (38%), Positives = 124/202 (61%)

Query:   155 SETKAK---MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 211
             SET  K   +  +E E+  +VG+ ++K  +++    + ++++R+ +GLK   ++  HM F
Sbjct:    36 SETTTKHEMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLK-SEKQVLHMLF 94

Query:   212 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 271
              GNPGTGKT VAR++G+LL+ + IL    + E +R DLVGE++GHT  KTR  IK+A GG
Sbjct:    95 KGNPGTGKTTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGG 154

Query:   272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEG 329
             ILF+DEAY L    +  +KD+G EA++ ++  M+  +   V+I AGYS  M   ++ N G
Sbjct:   155 ILFIDEAYSLA---RGGEKDFGKEAIDTLVKHMEDKQHGFVLILAGYSREMNHFLSLNPG 211

Query:   330 FCRRVTKFFHFNDFNSEELAKI 351
                R      F D++  +L +I
Sbjct:   212 LQSRFPFIIEFADYSVNQLLEI 233

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|BA_3839 BA_3839 "stage V sporulation protein K" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 78/202 (38%), Positives = 124/202 (61%)

Query:   155 SETKAK---MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 211
             SET  K   +  +E E+  +VG+ ++K  +++    + ++++R+ +GLK   ++  HM F
Sbjct:    36 SETTTKHEMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLK-SEKQVLHMLF 94

Query:   212 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 271
              GNPGTGKT VAR++G+LL+ + IL    + E +R DLVGE++GHT  KTR  IK+A GG
Sbjct:    95 KGNPGTGKTTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGG 154

Query:   272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEG 329
             ILF+DEAY L    +  +KD+G EA++ ++  M+  +   V+I AGYS  M   ++ N G
Sbjct:   155 ILFIDEAYSLA---RGGEKDFGKEAIDTLVKHMEDKQHGFVLILAGYSREMNHFLSLNPG 211

Query:   330 FCRRVTKFFHFNDFNSEELAKI 351
                R      F D++  +L +I
Sbjct:   212 LQSRFPFIIEFADYSVNQLLEI 233

GO:0003674 "molecular_function" evidence=ND

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|O53687 eccA3 "ESX-3 secretion system protein EccA3" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 359 (131.4 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 93/271 (34%), Positives = 147/271 (54%)

Query:   153 ACSETKAKM-DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 211
             A  E KA +  E E +L+  +GL E+K Q+ +    + ++  RK  GL V A+R  H+ F
Sbjct:   325 AAHERKAALLHEAELQLAEFIGLDEVKRQVSRLKSSVAMELVRKQRGLTV-AQRTHHLVF 383

Query:   212 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 271
              G PGTGKT +AR++ ++   +G+L  + + EV R DL+G+ +G T  KT   I  A  G
Sbjct:   384 AGPPGTGKTTIARVVAKIYCGLGLLKRENIREVHRADLIGQHIGETEAKTNAIIDSALDG 443

Query:   272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--DGGKVVVIFAGYSEPMKRVIASNEG 329
             +LF+DEAY L+     +D  +G+ A++ +++ M  D  ++VVI AGY   + + + +NEG
Sbjct:   444 VLFLDEAYALVATGAKND--FGLVAIDTLLARMENDRDRLVVIIAGYRADLDKFLDTNEG 501

Query:   330 FCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA-IAALIEKETT 388
                R T+   F  + S EL +I H KM  Q  DS+     LH   ++ A +AA    +T 
Sbjct:   502 LRSRFTRNIDFPSYTSHELVEIAH-KMAEQ-RDSVFEQSALHDLEALFAKLAAESTPDTN 559

Query:   389 EKQRREM----NGGLVDPMLVNARENLDLRL 415
                RR +    NG  V  ++  + E  + RL
Sbjct:   560 GISRRSLDIAGNGRFVRNIVERSEEEREFRL 590

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010106 "cellular response to iron ion starvation" evidence=IEP

GO:0033214 "iron assimilation by chelation and transport" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0055069 "zinc ion homeostasis" evidence=IDA

GO:0055072 "iron ion homeostasis" evidence=IDA

UNIPROTKB|O69733 eccA1 "ESX-1 secretion system protein EccA1" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 350 (128.3 bits), Expect = 1.8e-31, P = 1.8e-31
 Identities = 91/274 (33%), Positives = 145/274 (52%)

Query:   163 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMV 222
             E + EL   +GL  +K Q+ ++    L+   R A G+KV A+   HM F G PGTGKT +
Sbjct:   285 EAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV-AQPSKHMIFTGPPGTGKTTI 343

Query:   223 ARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLI 282
             AR++  +L  +G++   ++ E  R D V E+ G +  KT + I +A GG+LF+DEAY L+
Sbjct:   344 ARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGGVLFIDEAYALV 403

Query:   283 PMQKADDKDYGIEALEEIMSVM--DGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 340
               +      +G EAL+ +++ M  D  ++VVI AGYS  + R++ +NEG   R      F
Sbjct:   404 QERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDIDRLLETNEGLRSRFATRIEF 463

Query:   341 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG-GL 399
             + ++ EEL +I ++      +DS L      +   + A   L ++    ++  ++ G G 
Sbjct:   464 DTYSPEELLEIANVIA--AADDSALTAEAAENF--LQAAKQLEQRMLRGRRALDVAGNGR 519

Query:   400 VDPMLVNARENL-DLRLS----FDCLDTDELRTI 428
                 LV A E   D+RL+     D LD D LR I
Sbjct:   520 YARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 553

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0044117 "growth of symbiont in host" evidence=IMP

GO:0051260 "protein homooligomerization" evidence=IPI

TIGR_CMR|CHY_1391 CHY_1391 "stage V sporulation protein K" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 76/191 (39%), Positives = 111/191 (58%)

Query:   160 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
             ++  L  EL  +VGL E+K  + +      + ++R    LK       HM F GNPGTGK
Sbjct:    24 QVSSLLKELDRMVGLIEVKEMVFEIYALAQIHKKRVQEKLKTN-NVSWHMVFKGNPGTGK 82

Query:   220 TMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAY 279
             T VARI+G+L   +GIL    + EV+R DLVGE++GHT  KTR ++K+A GG+LF+DEAY
Sbjct:    83 TTVARIIGKLFKEIGILTKGHLIEVERADLVGEYIGHTALKTREQLKKALGGVLFIDEAY 142

Query:   280 RLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRVTKF 337
              L    +  DKD+G EA++ ++   +  +  +V+I AGY + M  ++  N G   R    
Sbjct:   143 SLA---RGGDKDFGREAIDVVVKGAEDYRDNLVIILAGYYDEMNYLLEQNPGLKSRFPIE 199

Query:   338 FHFNDFNSEEL 348
               F D+  EEL
Sbjct:   200 ITFPDYTDEEL 210

GO:0005524 "ATP binding" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

ASPGD|ASPL0000069352 AN7246 [Emericella nidulans (taxid:162425)]

 Score = 252 (93.8 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 64/219 (29%), Positives = 116/219 (52%)

Query:   170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 229
             +IVG   +  +L ++ + +   +  + L +      P +  F G PG+GKT  AR +G++
Sbjct:  1844 DIVGCESIISKLEEYRQSV---KNMRELDMDPKEHVPFNFLFRGPPGSGKTSTARKMGKV 1900

Query:   230 LYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADD 289
              Y +G+L +  V E   TDL+G+++GHTGPKT+  ++++ G +L +DEAYRL   Q A  
Sbjct:  1901 YYDMGLLSSAEVIESSATDLIGQYIGHTGPKTQELLEKSLGKVLLIDEAYRLAEGQFA-- 1958

Query:   290 KDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 349
             K+   E ++ I       K+++I AGY   + R++  N G   R  +   FN     +  
Sbjct:  1959 KEAMDEMVDCITKPKFFQKLIIILAGYDNDINRLMTINPGLTSRFPEELEFNGLAPADCL 2018

Query:   350 KILHIKMNNQTEDSL--LYGFKLHSSCSMDAIAALIEKE 386
             ++L   +  +  D L  +  F L +   +D+ ++L +K+
Sbjct:  2019 QLLTKLLQRRKADFLPKVNSFDLDA---LDSPSSLFQKK 2054

GO:0005575 "cellular_component" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|P63744 eccA5 "ESX-5 secretion system protein EccA5" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 224 (83.9 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 63/228 (27%), Positives = 108/228 (47%)

Query:   140 WHSEEQRKRRALEAC--SETKAK-MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKA 196
             W  +    R   EA   +E  AK + E + EL+ ++G+ + K +++       ++  R  
Sbjct:   282 WDPDSAPTRAQTEAARHAEMAAKYLAEGDAELNAMLGMEQAKKEIKLIKSTTKVNLARAK 341

Query:   197 LGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 256
             +GL V      H   LG PGTGKT VAR   + L  + +L    V E  RT L+G ++  
Sbjct:   342 MGLPVPVTSR-HTLLLGPPGTGKTSVARAFTKQLCGLTVLRKPLVVETSRTKLLGRYMAD 400

Query:   257 TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFA 314
                 T   ++ A GG +F DE + L     +    YG   +  ++  M+  +  +VV  A
Sbjct:   401 AEKNTEEMLEGALGGAVFFDEMHTLHEKGYSQGDPYGNAIINTLLLYMENHRDELVVFGA 460

Query:   315 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED 362
             GY++ M++++  N+G  RR +    F  +  +EL  +  + M  + ED
Sbjct:   461 GYAKAMEKMLEVNQGLRRRFSTVIEFFSYTPQELIALTQL-MGRENED 507

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|G4NES4 MGG_11680 "AAA family ATPase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 213 (80.0 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
 Identities = 68/232 (29%), Positives = 111/232 (47%)

Query:   146 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 205
             + R+  E     +       ++L  + GL E+K +     + M+  + R+ + L+ G R 
Sbjct:   357 KARQEWEHLKRAEGAQSAALDDLMEMTGLEEVK-EAFLTMQNMVDAKMRQNVSLQ-GERW 414

Query:   206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR-RR 264
                +  LGNPGTGKT VAR+ G+ L  VG +   R  E     L    +G +G ++    
Sbjct:   415 GASL--LGNPGTGKTTVARLYGKFLTSVGAIAGTRFEETTGAKLA--HLGVSGCESLIAD 470

Query:   265 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKR 322
             I E+ GG+LFVDEAY+L     + +   G   L+ +++ ++   GK+V + AGY   M+ 
Sbjct:   471 ILESGGGVLFVDEAYQLT----SGNNQGGGAVLDFLLAEIENLVGKIVFVIAGYDSDMEA 526

Query:   323 VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 374
               A N G   R      F+D+  EE+  IL  K++ +    +     L  SC
Sbjct:   527 FFAHNTGLRSRFPHQLRFSDYTDEEIHYILQHKIDKRYNGKMRCEGGLSGSC 578

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 145 (56.1 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 52/149 (34%), Positives = 78/149 (52%)

Query:    50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
             TPLH++A   + EIVK+L++  G     + A N  G TPLH AA     E A +LL +GA
Sbjct:    38 TPLHIAASAGRDEIVKALID-KG---APINAVNQNGCTPLHYAASKNKQEIAIMLLENGA 93

Query:   110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS-----EEQRKRRALE-ACSETKAKMDE 163
               +A  +   TPL H +   G+ K+ ++LL H+     ++      L  AC E +  +DE
Sbjct:    94 DPDATDHFESTPL-HRAAAKGNLKMIQILLRHNASVNIQDSEGNTPLHLACDEER--VDE 150

Query:   164 LENELSNIVGLH-ELKIQLR--KWAKGML 189
              +  +S+   +H E K +L   K AKG L
Sbjct:   151 AKLLVSHGASIHTENKEELTPLKVAKGGL 179

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016741001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (484 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035648001	RecName- Full=Ribulose bisphosphate carboxylase large chain; Short=RuBisCO large subunit; EC=4. [...] (327 aa)	•						•		0.742
	GSVIVG00031354001	RecName- Full=Ribulose bisphosphate carboxylase small chain; EC=4.1.1.39;; RuBisCO catalyzes tw [...] (169 aa)	•						•		0.597
	GSVIVG00016307001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (286 aa)	•						•		0.565
	GSVIVG00015908001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (324 aa)	•						•		0.546
	GSVIVG00017679001	RecName- Full=Ribulose bisphosphate carboxylase small chain; EC=4.1.1.39;; RuBisCO catalyzes tw [...] (180 aa)	•						•		0.491
	GSVIVG00027605001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (230 aa)	•								0.425
	GSVIVG00020537001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (222 aa)	•						•		0.422

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
TIGR02881	261	TIGR02881, spore_V_K, stage V sporulation protein	2e-48
CHL00181	287	CHL00181, cbbX, CbbX; Provisional	2e-46
TIGR02880	284	TIGR02880, cbbX_cfxQ, probable Rubsico expression	8e-46
TIGR03922	557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	4e-40
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-15
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	3e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-09
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	1e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-08
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	3e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-04
smart00248	30	smart00248, ANK, ankyrin repeats	5e-04
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	6e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	0.001
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	0.002
TIGR02928	365	TIGR02928, TIGR02928, orc1/cdc6 family replication	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
pfam06309	127	pfam06309, Torsin, Torsin	0.004
pfam13401	124	pfam13401, AAA_22, AAA domain	0.004

>gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K

 Score =  166 bits (422), Expect = 2e-48
 Identities = 100/276 (36%), Positives = 147/276 (53%), Gaps = 21/276 (7%)

Query: 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVA 223
           +E ELS +VGL E+K  +++    + ++E+RK  GLK   ++  HM F GNPGTGKT VA
Sbjct: 1   VERELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVA 59

Query: 224 RILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 283
           RILG+L   + +L    + EV+R DLVGE++GHT  KTR  IK+A GG+LF+DEAY L  
Sbjct: 60  RILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSL-- 117

Query: 284 MQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 341
             +  +KD+G EA++ ++  M+    + V+I AGYS+ M   ++ N G   R      F 
Sbjct: 118 -ARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFP 176

Query: 342 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ--RREM-NGG 398
           D+  EEL +I   +M  + E  L          + +A   L E      Q   RE  N  
Sbjct: 177 DYTVEELMEIA-ERMVKEREYKL----------TEEAKWKLREHLYKVDQLSSREFSNAR 225

Query: 399 LVDPMLVNARENLDLR-LSFDCLDTDELRTITLEDL 433
            V  ++  A     +R L       ++L  +  EDL
Sbjct: 226 YVRNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL 261

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group [Cellular processes, Sporulation and germination]. Length = 261

>gnl|CDD|177083 CHL00181, cbbX, CbbX; Provisional

 Score =  161 bits (410), Expect = 2e-46
 Identities = 85/208 (40%), Positives = 126/208 (60%), Gaps = 10/208 (4%)

Query: 155 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGN 214
           ++ +  +D L+ EL   VGL  +K ++R+ A  +L+D  RK LGL   +    HM+F G+
Sbjct: 12  TQIQEVLDILDEEL---VGLAPVKTRIREIAALLLIDRLRKNLGL-TSSNPGLHMSFTGS 67

Query: 215 PGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILF 274
           PGTGKT VA  +  +LY +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF
Sbjct: 68  PGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLF 127

Query: 275 VDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 331
           +DEAY L    K D ++DYG EA+E ++ VM+  +  +VVIFAGY + M +   SN G  
Sbjct: 128 IDEAYYLY---KPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLS 184

Query: 332 RRVTKFFHFNDFNSEELAKILHIKMNNQ 359
            R+     F D+  EEL +I  I +  Q
Sbjct: 185 SRIANHVDFPDYTPEELLQIAKIMLEEQ 212

Length = 287

>gnl|CDD|200217 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX

 Score =  160 bits (405), Expect = 8e-46
 Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 19/291 (6%)

Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 207
           RA    S     +D+L+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 5   RAEYEGSGITEVLDQLDREL---IGLKPVKTRIREIAALLLVERARQKLGL---ASAAPT 58

Query: 208 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
            HM+F GNPGTGKT VA  + ++L+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 59  LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 118

Query: 267 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 324
            A GG+LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY + M    
Sbjct: 119 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYKDRMDSFF 176

Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384
            SN GF  RV     F D++ EEL +I  + ++ Q      Y F   +  +     AL  
Sbjct: 177 ESNPGFSSRVAHHIDFPDYSDEELLEIAGLMLDEQQ-----YRFTAEAETAFADYIALRR 231

Query: 385 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 435
            +      R +   L D   +     L        LD  +L TI  ED+ A
Sbjct: 232 TQPHFANARSIRNAL-DRARLRQANRLFTASD-GVLDKSDLSTIAPEDILA 280

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. Length = 284

>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA

 Score =  150 bits (381), Expect = 4e-40
 Identities = 112/405 (27%), Positives = 172/405 (42%), Gaps = 58/405 (14%)

Query: 84  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL---DHLSNGPGSAKLRELLL- 139
             E  +           A    A    + A   E +      D  +N P + ++ E L  
Sbjct: 165 RLEEAIEGPRGPAAAPVADGAYAKAMVLRALGEEDEAQELLQDLYANHPENTQVEEALDD 224

Query: 140 -------------------WHSEEQRKRRALEACS--ETKAK-MDELENELSNIVGLHEL 177
                              W       R      +  E KAK + E E EL+  +GL  +
Sbjct: 225 PSYRLVTTTAETIEARTDPWDPSSAPSRAEFVDPAAAERKAKLLAEAEAELAEQIGLERV 284

Query: 178 KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 237
           K Q+        +   R   GL V A+   HM F G PGTGKT +AR++ ++   +G+L 
Sbjct: 285 KRQVAALKSSTAMALARAERGLPV-AQTSNHMLFAGPPGTGKTTIARVVAKIYCGLGVLR 343

Query: 238 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEAL 297
              V EV R DL+G+++G +  KT   I  A GG+LF+DEAY L+         +G+EA+
Sbjct: 344 KPLVREVSRADLIGQYIGESEAKTNEIIDSALGGVLFLDEAYTLVETGYGQKDPFGLEAI 403

Query: 298 EEIMSVM--DGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 355
           + +++ M  D  ++VVI AGY + + + +  NEG   R T+   F  ++ +EL +I   +
Sbjct: 404 DTLLARMENDRDRLVVIGAGYRKDLDKFLEVNEGLRSRFTRVIEFPSYSPDELVEIAR-R 462

Query: 356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ----------RREM----NGGLVD 401
           M  + +  L             A  AL+E  TT  Q          RR +    NG  V 
Sbjct: 463 MATERDSVL----------DDAAADALLEAATTLAQDTTPDANGDLRRGLDIAGNGRFVR 512

Query: 402 PMLVNARENLDLRL----SFDCLDTDELRTITLEDLEAGLKLLLR 442
            ++  A E  D RL      D +  D+L  IT +D+   +  LLR
Sbjct: 513 NVVERAEEERDFRLDHSDRLDAVTVDDLMEITADDVARAVASLLR 557

This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 11/125 (8%)

Query: 17  IHGCAQSGDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
           +H  A +G L   + LL    + +  +       +TPLH++A     EIVK LLE   + 
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAKDNDG----RTPLHLAAKNGHLEIVKLLLEKGAD- 65

Query: 75  KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKL 134
              + A++  G TPLH+AA+NG  +  KLLL HGA + A+  +G+TPL HL+   G  ++
Sbjct: 66  ---VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPL-HLAAKNGHLEV 121

Query: 135 RELLL 139
            +LLL
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.6 bits (181), Expect = 7e-16
 Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A     E+VK LLE    +  ++ A++  G TPLH+AAKNG  E  KLLL  G
Sbjct: 8   RTPLHLAASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + A+  +G TPL HL+   G+  + +LLL H
Sbjct: 64  ADVNARDKDGNTPL-HLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  A++G+L   + LL +   +          T LH++A     EIVK LLE       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEH----GA 52

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK 114
           ++ A++  G T LH+AA+NG  E  KLLL HGA I  K
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 211 FLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE- 269
             G PGTGKT +A+ + + L            E+  ++LV ++VG +  + R   + A+ 
Sbjct: 3   LYGPPGTGKTTLAKAVAKELGA-------PFIEISGSELVSKYVGESEKRLRELFEAAKK 55

Query: 270 --GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVI 312
               ++F+DE   L   + +         + ++++ +DG      KV+VI
Sbjct: 56  LAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVI 105

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 52  LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111
           LH++A     E+VK LLE  G D    +      +T LH+AA+NG  E  KLLL HGA +
Sbjct: 1   LHLAAKNGNLELVKLLLE-KGADVNLGDT-----DTALHLAARNGNLEIVKLLLEHGADV 54

Query: 112 EAKANEGKTPLDH 124
            AK  +G T L  
Sbjct: 55  NAKDKDGNTALHL 67

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.9 bits (135), Expect = 9e-10
 Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL 125
           A++  G TPLH+AA NG  E  KLLL +GA + AK N+G+TPL HL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPL-HL 46

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 11/147 (7%)

Query: 1   MQKNQDRRSRSAKPATIHGC---AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAG 57
           + K    R  +A+          A S       +LL  + + +N ++     TPLH++A 
Sbjct: 57  LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADG-DTPLHLAAL 115

Query: 58  YNK-----AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE 112
                    E+ K LLE  G D      ++  G TPLH AA NG  +  +LLL  GA   
Sbjct: 116 NGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN 174

Query: 113 AKANEGKTPLDHLSNGPGSAKLRELLL 139
           ++ + G T L   +   G  +L +LLL
Sbjct: 175 SRNSYGVTAL-DPAAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 227
           L +I GL E K +L K A    L  +R  L  K+G R P  +   G PGTGKT++A+ + 
Sbjct: 241 LDDIGGLEEAKEEL-KEAIETPL--KRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVA 297

Query: 228 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM 284
                       R   V+ ++L+ ++VG +    R   ++A      I+F+DE   L   
Sbjct: 298 LESR-------SRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASG 350

Query: 285 QKADDKDYGIEALEEIMSVMDGGK----VVVI 312
           +   +   G   + ++++ +DG +    V+VI
Sbjct: 351 RGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382

Length = 494

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 51  PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 110
           P+H++  +N  +I+K LLE           ++  GE+PLH AA+ G     KLL+ HG  
Sbjct: 160 PIHIAIKHNFFDIIKLLLE----KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215

Query: 111 IEAKANEGKTPL 122
           I  K   G TPL
Sbjct: 216 IMNKCKNGFTPL 227

Length = 434

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 191 DERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRTD 248
           +E  +AL   +    P ++   G PGTGKT +AR +   L+  G   L  +    ++   
Sbjct: 4   EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV 63

Query: 249 LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGG 307
           +   F            ++A+ G+LF+DE   L    +          LE +  +  D  
Sbjct: 64  VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALL----RVLETLNDLRIDRE 119

Query: 308 KVVVIFA 314
            V VI A
Sbjct: 120 NVRVIGA 126

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 67  LLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
           LLE   +  ++L A +  G TPLH+AAK G  E  + LL  G  +  + ++G T LD
Sbjct: 1   LLE---HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 32  LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91
            L      +N ++ V   TPLH +   N  E VK LL+  G +       N YG+TPLH+
Sbjct: 177 YLLSYGVPINIKD-VYGFTPLHYAVYNNNPEFVKYLLDL-GAN---PNLVNKYGDTPLHI 231

Query: 92  AAKNGCNEAAKLLLAHGAFIEAKA-----NEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146
           A  N   E  KLLL +G  I+         + K              +  + L      +
Sbjct: 232 AILNNNKEIFKLLLNNGPSIKTIIETLLYFKDKDLNTITKIKMLKKSIMYMFLLDPGFYK 291

Query: 147 KRRALEACSETKAKMDELENELSNI 171
            R+ +E     K  ++E E E+  +
Sbjct: 292 NRKLIENSKSLKDVINECEKEIERM 316

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 84  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN 116
            G TPLH+AA+NG  E  KLLL  GA + A+  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           +LL E  +  N ++    ++PLH +A Y     +K L++   +   + +     G TPLH
Sbjct: 174 KLLLEKGAYANVKD-NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN----GFTPLH 228

Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS-----EEQ 145
            A  +  N +A  LL + A I  +  +G TPL H  N P    + ++LL+H      ++ 
Sbjct: 229 NAIIH--NRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDN 286

Query: 146 RKRRALEACSETKAKMDELENELSNIVGLHE 176
           +    ++   +   K   +++ ++N V + E
Sbjct: 287 KGENPIDTAFKYINKDPVIKDIIANAVLIKE 317

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105
           T LH +A   + E+VK LLE      V++   +  G T LH+AA+NG  E  KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLE----KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T LH +      E +K L E+  +  V +E  N  G  P+H+A K+   +  KLLL  G
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGAD--VNIEDDN--GCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142
           A+   K N G++PL H +   G     +LL+ H 
Sbjct: 181 AYANVKDNNGESPL-HNAAEYGDYACIKLLIDHG 213

Length = 434

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG----ILPTDRVTEVQRTDLVGEFVGHTGPK 260
               +  +G PG+GKT +AR L R L   G     +  + + E     L+   VG     
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 261 T---------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 311
                         ++ +  +L +DE   L+  ++        E    ++   +    V+
Sbjct: 61  GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120

Query: 312 I 312
           +
Sbjct: 121 L 121

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 50  TPLHV---SAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA-AKLLL 105
           TPLH+    +     +IV+ LLE  G D   + A    G TPLH+   N       KLL+
Sbjct: 49  TPLHLYLHYSSEKVKDIVRLLLE-AGAD---VNAPERCGFTPLHLYLYNATTLDVIKLLI 104

Query: 106 AHGAFIEAKANEGKTPLD-HLSNGPGSAKLRELLL 139
             GA + AK   G+TPL  +LS    + K+  LLL
Sbjct: 105 KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLL 139

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 11/128 (8%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHV-SAGYN-KAEIVKSLLEWPGND 74
           +H    +   L   +LL +  + +N ++ V  +TPLHV  +G+N   ++++ LL      
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKV-GRTPLHVYLSGFNINPKVIRLLL----RK 141

Query: 75  KVELEAQNMYGETPLHMAAKN-GCN-EAAKLLLAHGAFIEAKANEGKTPLDHLSNG--PG 130
             ++ A ++YG TPL +  K+   N E  +LL+  GA + A  +  ++ L H      P 
Sbjct: 142 GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPR 201

Query: 131 SAKLRELL 138
           +  +REL+
Sbjct: 202 ARIVRELI 209

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 33 LRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92
          L E+  +          TPLH++A Y   E+V+ LL+   +  +    ++  G T L +A
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL----RDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 50  TPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
           TPLH  A  +  K  +V  LL       + + A+N YG+TPLH AA      A + L+A 
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLI----AGISINARNRYGQTPLHYAAVFNNPRACRRLIAL 279

Query: 108 GAFIEAKANEGKTPLDHL 125
           GA I A +++G TPL  +
Sbjct: 280 GADINAVSSDGNTPLSLM 297

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 50  TPLH--VSAGYNKAEIVKSLLEWPGN----DKVEL--------EAQNMYGETPLHMAAKN 95
             LH  + +     +I+K L++   +    ++V            +++YG TPLH A  N
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 96  GCNEAAKLLLAHGAFIEAKANEGKTPL 122
              E  K LL  GA        G TPL
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPL 229

Length = 422

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 84  YGETPLHMAAKNGCNEAAKLLLAHGA 109
            G TPLH+AA+NG  E  KLLL HGA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 15  ATIHGCAQSGDLLAFQRLLRENPSL-LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
           A ++G    G++   + LL     L +N        TPLH +A    A+IV+ LLE   +
Sbjct: 113 AALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD 172

Query: 74  DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 110
                 ++N YG T L  AAKNG  E  KLLL  G  
Sbjct: 173 ----PNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Length = 235

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 84  YGETPLHMAAKNGCNEAAKLLLAHGAFIEA 113
            G TPLH+AA+NG  E  KLLL  GA I A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR-- 263
           P ++ F G PGTGKTM+A+ L      V +L       V+ T+L+GE VG    +     
Sbjct: 151 PKNVLFYGPPGTGKTMMAKALANEA-KVPLLL------VKATELIGEHVGDGARRIHELY 203

Query: 264 -RIKEAEGGILFVDE 277
            R ++A   I+F+DE
Sbjct: 204 ERARKAAPCIVFIDE 218

Length = 368

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-----EAAKLL 104
            PL+++      ++VK LL    ++  ++ +      TPLH  +    N     E  KLL
Sbjct: 37  LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92

Query: 105 LAHGAFIEAKANEGKTPLDHL-SNGPGSAKLRELLL 139
           L +GA + A  N G TPL +  S    S  + E LL
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL 128

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKA-EIVKSLLEWPGNDKVELEAQN-MYGETP 88
            +L EN +  + R+     TPLH+S GY K  +I+K LLE      V++ A++ + G T 
Sbjct: 218 HILLENGASTDARD-KCGNTPLHISVGYCKDYDILKLLLE----HGVDVNAKSYILGLTA 272

Query: 89  LHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           LH + K+      KLLL +GA I +  +   TPL
Sbjct: 273 LHSSIKS--ERKLKLLLEYGADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 31/149 (20%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           G TPLH+A  NG  +  ++LL  GA       +GKTPL+ L+   G  ++ +LL  HS+ 
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLE-LAEENGFREVVQLLSRHSQC 173

Query: 145 QRKRRALEACSETKAKMDELEN-----ELSNIVGLHELKIQLRKWAKGMLLDERRKALGL 199
             +   L A     AK D         E S I   H     + +   G L+         
Sbjct: 174 HFE---LGAN----AKPDSFTGKPPSLEDSPISSHHPDFSAVPQPMMGSLI--------- 217

Query: 200 KVGARRPPHMAFLGNPGTGKTMVARILGR 228
                    +  +G PG GKT VAR + R
Sbjct: 218 ---------VIMVGLPGRGKTYVARQIQR 237

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 21  AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80
           A SGD +   R+L    +  N R+    +TPLH++      ++V+ LLE+ G D   L+ 
Sbjct: 90  AASGDAVGA-RILLTGGADPNCRD-YDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDK 146

Query: 81  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140
               G+TPL +A +NG  E  +LL  H               D  +  P S +   +   
Sbjct: 147 D---GKTPLELAEENGFREVVQLLSRHS--QCHFELGANAKPDSFTGKPPSLEDSPISSH 201

Query: 141 H 141
           H
Sbjct: 202 H 202

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 87  TPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH-LSNG 128
           T LH AA +G  E  K LL  G  I     +G T L     NG
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENG 45

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 46  VMAQTPLH-VSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-EAAKL 103
               TPLH  S   + + +V  LLE       ++ A+N+ GETPL++ AKNG + E  + 
Sbjct: 271 DCKNTPLHHASQAPSLSRLVPKLLE----RGADVNAKNIKGETPLYLMAKNGYDTENIRT 326

Query: 104 LLAHGAFIEAKANEGKTPLDHLS 126
           L+  GA + A      TPL   S
Sbjct: 327 LIMLGADVNAADRLYITPLHQAS 349

Length = 682

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 21/154 (13%)

Query: 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 229
           +I GL E K ++R+  +   L  +   L   +G   P  +   G PGTGKT++A+ +   
Sbjct: 179 DIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235

Query: 230 L--YMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPM 284
              Y + I            +++ ++ G +  + R   KEAE     I+F+DE   + P 
Sbjct: 236 AGAYFISI---------NGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPK 286

Query: 285 QKADDKDYGIEALEEIMSVMDG----GKVVVIFA 314
           ++    +     + +++++MDG    G+V+VI A
Sbjct: 287 REEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 18/154 (11%)

Query: 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 228
           S+I GL E+K +LR+  +  L   +   +  K+G R P  +   G PGTGKT++A+    
Sbjct: 453 SDIGGLEEVKQELREAVEWPL---KHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAK---- 505

Query: 229 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLIPMQ 285
               V          V+  +++ ++VG +    R   R+ ++A   I+F DE   + P +
Sbjct: 506 ---AVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPAR 562

Query: 286 KAD-DKDYGIEALEEIMSVMDG----GKVVVIFA 314
            A  D       + ++++ MDG      VVVI A
Sbjct: 563 GARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 62/280 (22%), Positives = 98/280 (35%), Gaps = 70/280 (25%)

Query: 190 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT------E 243
           ++E  KAL   +   RP ++   G  GTGKT V + + + L         RV       +
Sbjct: 24  IEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83

Query: 244 VQRT------DLV------GEFVGHTGPKTRR-------RIKEAEGGILFV-DEAYRLIP 283
           +  T      +L       GE V  TG  T          + E    ++ V DE   L+ 
Sbjct: 84  ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV- 142

Query: 284 MQKADDKDYGIEALEEIMSVMDGGKVVVIF----AGYSEPM-KRVIASNEGFCRRVTKFF 338
               DD  Y +         +D  KV VI       + E +  RV +S    C       
Sbjct: 143 -GDDDDLLYQLSRARS-NGDLDNAKVGVIGISNDLKFRENLDPRVKSS---LCEEE---I 194

Query: 339 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI---AALIEKETTEKQRREM 395
            F  +++EEL  IL        E+     F          I   AAL  +E         
Sbjct: 195 IFPPYDAEELRDIL--------ENRAEKAFY-DGVLDDGVIPLCAALAAQEHG------- 238

Query: 396 NGGLVDPMLVNARENLDL-RLSFDCLDTDELRTITLEDLE 434
                     +AR+ +DL R++ +  + +    +T + +E
Sbjct: 239 ----------DARKAIDLLRVAGEIAEREGAERVTEDHVE 268

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other [DNA metabolism, DNA replication, recombination, and repair]. Length = 365

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H   + GD+ A + LL       ++       TPLH++    K +I+K L+        
Sbjct: 72  LHDAVEEGDVKAVEELLDLG-KFADDVFYKDGMTPLHLATILKKLDIMKLLIAR----GA 126

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           + +  N    +PLH+A   G  +  +LL+ H A ++ +   G TPL
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL 172

Length = 413

>gnl|CDD|148114 pfam06309, Torsin, Torsin

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 24/108 (22%)

Query: 152 EACSETK--AKMDELENELSN-IVGLHELKIQLRKWAKGMLLDER-RKALGLKVGARRPP 207
           E C + +       LE +L+  + G H +K  + +  KG   + + RK L L        
Sbjct: 5   ECCGDCRISFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWENPKPRKPLVL-------- 56

Query: 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG 255
             +F G  GTGK  VA I+   LY  G+          R+  V  FV 
Sbjct: 57  --SFHGWTGTGKNFVAEIIADNLYRDGL----------RSPYVHHFVA 92

This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia. Length = 127

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 27/128 (21%)

Query: 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------PTDRVTEVQRTDLVGEF 253
            R        G  G+GKT + R L R L    ++         P D + ++ R  L    
Sbjct: 1   RRGAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPKDLLRKILR-ALGLPL 59

Query: 254 VGHTGPKTRRRI----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 308
            G T  +    I    K     +L +DEA  L            +EALEE+  + D  + 
Sbjct: 60  SGGTTAELLEAILDALKRRGRPLLIIDEAQHL-----------SLEALEELRDLYDLSEK 108

Query: 309 -VVVIFAG 315
            + VI  G
Sbjct: 109 GIQVILVG 116

Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	100.0
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	100.0
CHL00181	287	cbbX CbbX; Provisional	100.0
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	100.0
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	100.0
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.98
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.98
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.97
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.97
COG2204	464	AtoC Response regulator containing CheY-like recei	99.97
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.97
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.97
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.96
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.96
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.96
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.96
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.96
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.96
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.96
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.96
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.96
CHL00195	489	ycf46 Ycf46; Provisional	99.96
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.95
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.95
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.94
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.94
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
CHL00176	638	ftsH cell division protein; Validated	99.94
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.94
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.93
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.93
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.93
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.93
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.92
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.92
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.92
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.92
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.91
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.91
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.91
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.89
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.88
KOG2028	554	consensus ATPase related to the helicase subunit o	99.88
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.88
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.88
CHL00206	2281	ycf2 Ycf2; Provisional	99.87
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.87
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.87
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.87
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.86
PRK13342	413	recombination factor protein RarA; Reviewed	99.85
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.85
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.85
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.84
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.84
PHA02791	284	ankyrin-like protein; Provisional	99.84
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.84
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.84
PRK13341	725	recombination factor protein RarA/unknown domain f	99.84
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.83
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.83
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.83
PHA02791	284	ankyrin-like protein; Provisional	99.83
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.83
PHA02859	209	ankyrin repeat protein; Provisional	99.83
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.83
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.83
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.83
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.83
PHA02741	169	hypothetical protein; Provisional	99.82
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.82
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.82
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.82
PHA02878	477	ankyrin repeat protein; Provisional	99.81
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	99.81
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.81
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.81
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.81
PHA02878	477	ankyrin repeat protein; Provisional	99.8
CHL00095	821	clpC Clp protease ATP binding subunit	99.8
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.8
PHA02875	413	ankyrin repeat protein; Provisional	99.8
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.8
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.8
KOG0508	615	consensus Ankyrin repeat protein [General function	99.8
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.8
PHA02874	434	ankyrin repeat protein; Provisional	99.8
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.79
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.79
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.79
PHA02874	434	ankyrin repeat protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.78
PHA02875	413	ankyrin repeat protein; Provisional	99.78
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	99.78
PRK15115	444	response regulator GlrR; Provisional	99.78
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.78
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	99.78
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.78
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.78
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.78
PHA02859	209	ankyrin repeat protein; Provisional	99.77
PHA03100	480	ankyrin repeat protein; Provisional	99.77
PHA02946	446	ankyin-like protein; Provisional	99.77
KOG0508	615	consensus Ankyrin repeat protein [General function	99.77
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.77
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.76
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.76
PHA03100	480	ankyrin repeat protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.76
PF00004	132	AAA: ATPase family associated with various cellula	99.76
PRK10865	857	protein disaggregation chaperone; Provisional	99.76
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.76
KOG0510	929	consensus Ankyrin repeat protein [General function	99.75
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.75
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.75
PHA02795	437	ankyrin-like protein; Provisional	99.75
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.75
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.75
PRK10365	441	transcriptional regulatory protein ZraR; Provision	99.75
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.75
PHA02989	494	ankyrin repeat protein; Provisional	99.75
PHA03095	471	ankyrin-like protein; Provisional	99.74
PHA02798	489	ankyrin-like protein; Provisional	99.74
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.74
PHA02884	300	ankyrin repeat protein; Provisional	99.74
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.74
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.74
PRK10865	857	protein disaggregation chaperone; Provisional	99.73
PHA02876	682	ankyrin repeat protein; Provisional	99.73
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.73
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.73
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.73
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.73
PHA02798	489	ankyrin-like protein; Provisional	99.73
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.72
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.72
CHL00095	821	clpC Clp protease ATP binding subunit	99.72
PHA03095	471	ankyrin-like protein; Provisional	99.72
PLN03025	319	replication factor C subunit; Provisional	99.72
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.72
PHA02946	446	ankyin-like protein; Provisional	99.71
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.71
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.71
KOG0510	929	consensus Ankyrin repeat protein [General function	99.71
PHA02876	682	ankyrin repeat protein; Provisional	99.71
PHA02730	672	ankyrin-like protein; Provisional	99.7
PRK12402	337	replication factor C small subunit 2; Reviewed	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.7
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.7
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.7
PHA02795	437	ankyrin-like protein; Provisional	99.7
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.7
KOG0514	452	consensus Ankyrin repeat protein [General function	99.7
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.7
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.69
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.69
PHA02743	166	Viral ankyrin protein; Provisional	99.69
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.69
PHA02989	494	ankyrin repeat protein; Provisional	99.69
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.69
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.69
PRK04195	482	replication factor C large subunit; Provisional	99.69
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.69
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.68
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.68
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	99.68
PHA02544	316	44 clamp loader, small subunit; Provisional	99.68
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	99.67
PHA02917	661	ankyrin-like protein; Provisional	99.67
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.67
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.67
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.66
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.66
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.66
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.66
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.66
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.66
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.65
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.65
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.65
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.65
PHA02917	661	ankyrin-like protein; Provisional	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.64
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.64
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.64
PRK08084	235	DNA replication initiation factor; Provisional	99.64
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.63
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.63
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.63
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.62
PHA02884	300	ankyrin repeat protein; Provisional	99.62
PHA02730	672	ankyrin-like protein; Provisional	99.61
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.61
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.6
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.6
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.6
PRK06893	229	DNA replication initiation factor; Validated	99.59
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.59
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	99.59
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.58
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.58
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.58
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.58
PRK12422	445	chromosomal replication initiation protein; Provis	99.58
PHA02736	154	Viral ankyrin protein; Provisional	99.58
PHA02741	169	hypothetical protein; Provisional	99.57
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.57
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.56
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.56
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
PRK08727	233	hypothetical protein; Validated	99.56
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.56
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.55
COG0606	490	Predicted ATPase with chaperone activity [Posttran	99.55
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.55
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.54
PHA02792	631	ankyrin-like protein; Provisional	99.53
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.53
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.52
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.51
PRK05642	234	DNA replication initiation factor; Validated	99.49
KOG0514	452	consensus Ankyrin repeat protein [General function	99.48
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.48
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.47
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.47
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.47
PRK06620	214	hypothetical protein; Validated	99.47
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.47
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.47
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	99.46
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	99.46
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.45
smart00350	509	MCM minichromosome maintenance proteins.	99.45
PRK09087	226	hypothetical protein; Validated	99.44
PRK13531	498	regulatory ATPase RavA; Provisional	99.42
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
PHA02792	631	ankyrin-like protein; Provisional	99.42
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.42
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.42
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.42
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	99.42
PHA02244	383	ATPase-like protein	99.41
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.4
COG4650	531	RtcR Sigma54-dependent transcription regulator con	99.4
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
PRK13765	637	ATP-dependent protease Lon; Provisional	99.39
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.38
PRK09862	506	putative ATP-dependent protease; Provisional	99.38
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.38
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.38
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.37
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.37
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	99.37
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.37
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.36
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.35
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.35
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.34
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.33
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.31
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.31
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.3
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.3
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.29
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.29
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.28
COG0714	329	MoxR-like ATPases [General function prediction onl	99.26
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.26
PRK04132	846	replication factor C small subunit; Provisional	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.25
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.24
PF07726	131	AAA_3: ATPase family associated with various cellu	99.23
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.22
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.22
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	99.22
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.22
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.21
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.2
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.16
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	99.16
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.16
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	99.15
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.13
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.1
KOG1514	767	consensus Origin recognition complex, subunit 1, a	99.1
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.08
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.05
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	99.03
PRK08116	268	hypothetical protein; Validated	99.03
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.03
smart00382	148	AAA ATPases associated with a variety of cellular	99.02
PRK08699	325	DNA polymerase III subunit delta'; Validated	98.99
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	98.99
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	98.98
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	98.98
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.97
PRK07993	334	DNA polymerase III subunit delta'; Validated	98.96
COG1241	682	MCM2 Predicted ATPase involved in replication cont	98.94
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.94
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	98.93
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.93
PRK12377	248	putative replication protein; Provisional	98.88
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.88
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	98.87
PF13173	128	AAA_14: AAA domain	98.86
PRK07952	244	DNA replication protein DnaC; Validated	98.84
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.81
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.77
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.75
PF13606	30	Ank_3: Ankyrin repeat	98.74
PRK06835	329	DNA replication protein DnaC; Validated	98.73
PRK08181	269	transposase; Validated	98.71
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	98.68
KOG0478	804	consensus DNA replication licensing factor, MCM4 c	98.68
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.68
PRK05917	290	DNA polymerase III subunit delta'; Validated	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.67
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.66
PF05729	166	NACHT: NACHT domain	98.64
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	98.64
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.64
PRK06526	254	transposase; Provisional	98.63
KOG0480	764	consensus DNA replication licensing factor, MCM6 c	98.59
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.56
PF13606	30	Ank_3: Ankyrin repeat	98.54
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.52
PRK06921	266	hypothetical protein; Provisional	98.51
PRK07132	299	DNA polymerase III subunit delta'; Validated	98.51
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.5
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.5
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.49
PRK05818	261	DNA polymerase III subunit delta'; Validated	98.47
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.46
KOG0522	560	consensus Ankyrin repeat protein [General function	98.46
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.46
PRK07276	290	DNA polymerase III subunit delta'; Validated	98.45
PRK09183	259	transposase/IS protein; Provisional	98.44
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.41
PRK08939	306	primosomal protein DnaI; Reviewed	98.41
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.39
KOG0522	560	consensus Ankyrin repeat protein [General function	98.35
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	98.32
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.32
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.31
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	98.29
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.24
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	98.23
PHA00729	226	NTP-binding motif containing protein	98.23
PRK14700	300	recombination factor protein RarA; Provisional	98.23
KOG0481	729	consensus DNA replication licensing factor, MCM5 c	98.19
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.18
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.14
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.13
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.09
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.08
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	98.08
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	98.06
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.99
KOG0511	516	consensus Ankyrin repeat protein [General function	97.99
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.98
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.95
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.95
PRK04296	190	thymidine kinase; Provisional	97.94
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	97.94
COG1067	647	LonB Predicted ATP-dependent protease [Posttransla	97.93
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.9
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.88
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.88
KOG0482	721	consensus DNA replication licensing factor, MCM7 c	97.87
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	97.87
KOG0477	854	consensus DNA replication licensing factor, MCM2 c	97.83
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	97.8
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.79
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.78
PRK10536	262	hypothetical protein; Provisional	97.78
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.77
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.77
KOG2384	223	consensus Major histocompatibility complex protein	97.76
PF14516	331	AAA_35: AAA-like domain	97.75
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.75
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.73
KOG2384	223	consensus Major histocompatibility complex protein	97.73
PRK15455	644	PrkA family serine protein kinase; Provisional	97.72
PRK10867	433	signal recognition particle protein; Provisional	97.72
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.71
PRK06581	263	DNA polymerase III subunit delta'; Validated	97.68
PHA02774	613	E1; Provisional	97.66
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.65
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.65
PRK08118	167	topology modulation protein; Reviewed	97.64
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.63
PRK13695	174	putative NTPase; Provisional	97.62
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.62
TIGR00959	428	ffh signal recognition particle protein. This mode	97.6
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.6
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	97.58
KOG0511	516	consensus Ankyrin repeat protein [General function	97.56
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.55
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.55
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.55
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.54
PRK07261	171	topology modulation protein; Provisional	97.54
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	97.53
PRK14532	188	adenylate kinase; Provisional	97.53
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.52
PRK00131	175	aroK shikimate kinase; Reviewed	97.51
PTZ00088	229	adenylate kinase 1; Provisional	97.5
PLN02200	234	adenylate kinase family protein	97.49
PRK09376	416	rho transcription termination factor Rho; Provisio	97.48
PHA02624	647	large T antigen; Provisional	97.47
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.47
PF10923	416	DUF2791: P-loop Domain of unknown function (DUF279	97.47
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.46
PRK11823	446	DNA repair protein RadA; Provisional	97.46
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.42
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.4
PF13245	76	AAA_19: Part of AAA domain	97.4
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	97.38
PRK06762	166	hypothetical protein; Provisional	97.38
PRK00625	173	shikimate kinase; Provisional	97.37
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.36
PRK13947	171	shikimate kinase; Provisional	97.32
PLN02674	244	adenylate kinase	97.32
cd01128	249	rho_factor Transcription termination factor rho is	97.32
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.31
PRK03839	180	putative kinase; Provisional	97.3
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.28
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	97.27
PRK13808	333	adenylate kinase; Provisional	97.26
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.26
PLN02459	261	probable adenylate kinase	97.25
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.24
PRK13948	182	shikimate kinase; Provisional	97.23
PRK14974	336	cell division protein FtsY; Provisional	97.22
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.22
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.21
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.2
PRK14529	223	adenylate kinase; Provisional	97.19
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.19
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.19
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.18
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.18
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.18
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.17
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.17
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.17
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.17
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	97.17
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.17
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.17
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.16
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.15
PRK05973	237	replicative DNA helicase; Provisional	97.15
PRK13949	169	shikimate kinase; Provisional	97.14
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.12
PRK06696	223	uridine kinase; Validated	97.11
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.1
PLN02840	421	tRNA dimethylallyltransferase	97.09
PRK06067	234	flagellar accessory protein FlaH; Validated	97.09
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.08
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.08
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.08
TIGR00767	415	rho transcription termination factor Rho. Members	97.07
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.07
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.07
PRK06217	183	hypothetical protein; Validated	97.06
PRK06547	172	hypothetical protein; Provisional	97.05
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.05
PRK14737	186	gmk guanylate kinase; Provisional	97.02
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.02
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.02
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.01
PRK13889	988	conjugal transfer relaxase TraA; Provisional	97.01
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.0
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.0
PRK00279	215	adk adenylate kinase; Reviewed	97.0
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.0
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.98
PRK14531	183	adenylate kinase; Provisional	96.98
smart00487	201	DEXDc DEAD-like helicases superfamily.	96.97
COG4178	604	ABC-type uncharacterized transport system, permeas	96.97
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.96
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	96.96

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-41  Score=306.53  Aligned_cols=237  Identities=22%  Similarity=0.307  Sum_probs=206.8

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ....++++.|.++.+++|++   .+.+|+.+++++..++..+|.+||||||||||||++||++|+..+.       .|+.
T Consensus       146 PdvtY~dIGGL~~Qi~EirE---~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIr  215 (406)
T COG1222         146 PDVTYEDIGGLDEQIQEIRE---VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIR  215 (406)
T ss_pred             CCCChhhccCHHHHHHHHHH---HhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEEE
Confidence            34578899999988888888   6889999999999999999999999999999999999999999887       9999


Q ss_pred             eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC----CcEEEEE
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG----GKVVVIF  313 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~----~~~~~i~  313 (445)
                      +..|.|+.+|+|+.+..++++|.-|+   +|||||||||++..+|.+++++...++|..++++   ||+    +++-||+
T Consensus       216 vvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~  295 (406)
T COG1222         216 VVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM  295 (406)
T ss_pred             eccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE
Confidence            99999999999999999999998884   5999999999999999887777777887765554   554    7899999


Q ss_pred             ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      |||+.++.     ||+|+|  |||+.|+||.|+.+.+.+||+.+.+++         .+.++++.+.++.....+     
T Consensus       296 ATNR~D~L-----DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM---------~l~~dvd~e~la~~~~g~-----  356 (406)
T COG1222         296 ATNRPDIL-----DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM---------NLADDVDLELLARLTEGF-----  356 (406)
T ss_pred             ecCCcccc-----ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc---------cCccCcCHHHHHHhcCCC-----
Confidence            99887775     999999  999999999999999999999999998         568889999888776554     


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                          ||+++++++..|         +..+-.+....||.+||.+|++++..
T Consensus       357 ----sGAdlkaictEA---------Gm~AiR~~R~~Vt~~DF~~Av~KV~~  394 (406)
T COG1222         357 ----SGADLKAICTEA---------GMFAIRERRDEVTMEDFLKAVEKVVK  394 (406)
T ss_pred             ----chHHHHHHHHHH---------hHHHHHhccCeecHHHHHHHHHHHHh
Confidence                488899999887         22233456678999999999998754

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-36  Score=294.79  Aligned_cols=239  Identities=23%  Similarity=0.279  Sum_probs=209.7

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ....|++|.|++++|..|++   .+.+|.++++.+..++..+|.+||||||||||||++||++|.+++.       +|+.
T Consensus       429 p~v~W~dIGGlE~lK~elq~---~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-------nFls  498 (693)
T KOG0730|consen  429 PNVSWDDIGGLEELKRELQQ---AVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-------NFLS  498 (693)
T ss_pred             CCCChhhccCHHHHHHHHHH---HHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-------Ceee
Confidence            35679999999999999998   6788899999999999999999999999999999999999999988       9999


Q ss_pred             eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      +.+.++.++|+|++++.++++|+.|+   ++|||+||||++...|++++++...+++++||..||+    .+++||+|||
T Consensus       499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATN  578 (693)
T KOG0730|consen  499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATN  578 (693)
T ss_pred             ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccC
Confidence            99999999999999999999998874   5999999999999999876678888999999999997    5788999988


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      +.+..     |++|.|  |||+.|++|.|+.+.+.+|++.+++++         .+.++++.+.++..+..++       
T Consensus       579 Rpd~I-----D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm---------p~~~~vdl~~La~~T~g~S-------  637 (693)
T KOG0730|consen  579 RPDMI-----DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM---------PFSEDVDLEELAQATEGYS-------  637 (693)
T ss_pred             Chhhc-----CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC---------CCCccccHHHHHHHhccCC-------
Confidence            76654     999999  999999999999999999999999987         6678889999998888777       


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                        |+++.+++++|...... -..      +-..|+.+||++|++..++
T Consensus       638 --GAel~~lCq~A~~~a~~-e~i------~a~~i~~~hf~~al~~~r~  676 (693)
T KOG0730|consen  638 --GAEIVAVCQEAALLALR-ESI------EATEITWQHFEEALKAVRP  676 (693)
T ss_pred             --hHHHHHHHHHHHHHHHH-Hhc------ccccccHHHHHHHHHhhcc
Confidence              78888999888443222 111      1347999999999987654

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=100.00  E-value=1e-34  Score=270.04  Aligned_cols=262  Identities=37%  Similarity=0.585  Sum_probs=215.5

Q ss_pred             HHHHHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316          161 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  239 (445)
Q Consensus       161 ~~~~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~  239 (445)
                      +.+....++ +++|++++|++|.++......+..+...+.... .+..+++|+||||||||++|+++++.+...+....+
T Consensus        13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~   91 (284)
T TIGR02880        13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG   91 (284)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence            445556666 599999999999999888877777777776543 345689999999999999999999999887777778


Q ss_pred             CeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCc
Q 013316          240 RVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYS  317 (445)
Q Consensus       240 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~  317 (445)
                      +|+.++++++.+.|+|+++..+.++|+++.++||||||+|.+.+.++  +.+.+.++++.|++.|+.  .++++|++++.
T Consensus        92 ~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~  169 (284)
T TIGR02880        92 HLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQRDDLVVILAGYK  169 (284)
T ss_pred             eEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            99999999999999999988899999999999999999999975432  245667889999999976  47899999998


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH-HHhhhcccC
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET-TEKQRREMN  396 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~n  396 (445)
                      +..+.+...+|+|++||+..|.||+|+.+|+.+|+++++++..           ..++.+++..+..+.. .....++||
T Consensus       170 ~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~-----------~~l~~~a~~~L~~~l~~~~~~~~~GN  238 (284)
T TIGR02880       170 DRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ-----------YRFSAEAEEAFADYIALRRTQPHFAN  238 (284)
T ss_pred             HHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc-----------cccCHHHHHHHHHHHHHhCCCCCCCh
Confidence            8788788889999999999999999999999999999998753           2344556554443311 011246999


Q ss_pred             chhhHHHHHHHHHhhhhhhccC---CCChhhhhhccHHHHHHH
Q 013316          397 GGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG  436 (445)
Q Consensus       397 ~r~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~d~~~a  436 (445)
                      +|++++++++++..++.|+...   ....+++.+|+.+|+.++
T Consensus       239 ~R~lrn~ve~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~~~  281 (284)
T TIGR02880       239 ARSIRNAIDRARLRQANRLFCDLDRVLDKSDLETIDPEDLLAS  281 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence            9999999999999999998543   345688999999998754

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>CHL00181 cbbX CbbX; Provisional

Probab=100.00  E-value=2.1e-34  Score=267.50  Aligned_cols=262  Identities=37%  Similarity=0.601  Sum_probs=212.5

Q ss_pred             HHHHHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316          161 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  239 (445)
Q Consensus       161 ~~~~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~  239 (445)
                      +.++...++ +++|++++|++|.+++..+.++..+...+... ..+..+++|+||||||||++|+++++.+...+.+..+
T Consensus        14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~-~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~   92 (287)
T CHL00181         14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTS-SNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKG   92 (287)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence            455666676 69999999999999887777776677776643 2345689999999999999999999999888888888


Q ss_pred             CeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCc
Q 013316          240 RVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYS  317 (445)
Q Consensus       240 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~  317 (445)
                      +++.++++++.+.|+|+++.++.++|+++.++||||||+|.+.+.++  ..+++.++++.|+..|++  +.+++|++++.
T Consensus        93 ~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~  170 (287)
T CHL00181         93 HLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQRDDLVVIFAGYK  170 (287)
T ss_pred             ceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            99999999999999999988889999999999999999999975432  245677899999999976  56899999998


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHH-HhhhcccC
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRREMN  396 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~n  396 (445)
                      +....+...+|+|++||+..|.|++|+.+|+.+|+..++++..       +.++++    +...+...... ....+++|
T Consensus       171 ~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~-------~~l~~~----~~~~L~~~i~~~~~~~~~GN  239 (287)
T CHL00181        171 DRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ-------YQLTPE----AEKALLDYIKKRMEQPLFAN  239 (287)
T ss_pred             HHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc-------CCCChh----HHHHHHHHHHHhCCCCCCcc
Confidence            8888888889999999999999999999999999999998753       233333    33333322111 11245799


Q ss_pred             chhhHHHHHHHHHhhhhhhccC---CCChhhhhhccHHHHHHH
Q 013316          397 GGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG  436 (445)
Q Consensus       397 ~r~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~d~~~a  436 (445)
                      +|+++++++++...++.|+...   ....+++.+|+.+||.+.
T Consensus       240 aR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~  282 (287)
T CHL00181        240 ARSVRNALDRARMRQANRIFESGGRVLTKADLVTIEAEDILKS  282 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHH
Confidence            9999999999999999998554   234678999999999753

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=100.00  E-value=1.1e-33  Score=261.54  Aligned_cols=253  Identities=37%  Similarity=0.562  Sum_probs=206.4

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+++++|++++|++|+++.........+...+.... ....+++|+||||||||++|+++|+.+...+.+..+++++++
T Consensus         3 ~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~   81 (261)
T TIGR02881         3 RELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE   81 (261)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence            4678899999999999999888877777777776543 345789999999999999999999999877777788999999


Q ss_pred             cccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHH
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV  323 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~  323 (445)
                      ++++.+.|+|+++..+.++|+.+.++||||||||.|...+   +.++..+.++.|++.|++  +.+++|++++....+.+
T Consensus        82 ~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~  158 (261)
T TIGR02881        82 RADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF  158 (261)
T ss_pred             HHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCC---ccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence            9999999999999999999999999999999999997522   234566888999999986  56788888888777777


Q ss_pred             HhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH---hhhcccCchhh
Q 013316          324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQRREMNGGLV  400 (445)
Q Consensus       324 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~n~r~l  400 (445)
                      ...+|+|++||+..|.||+|+.+|+.+|++.++.+..           ..++++++..+.......   ....++|+|.+
T Consensus       159 ~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~-----------~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~  227 (261)
T TIGR02881       159 LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKERE-----------YKLTEEAKWKLREHLYKVDQLSSREFSNARYV  227 (261)
T ss_pred             HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcC-----------CccCHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence            7789999999999999999999999999999987631           234555655443332211   23457999999


Q ss_pred             HHHHHHHHHhhhhhhccC-CCChhhhhhccHHHH
Q 013316          401 DPMLVNARENLDLRLSFD-CLDTDELRTITLEDL  433 (445)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~d~  433 (445)
                      +|+++.|++.++.|+... ..+.++..+++.+||
T Consensus       228 ~n~~e~a~~~~~~r~~~~~~~~~~~~~~l~~~d~  261 (261)
T TIGR02881       228 RNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL  261 (261)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCHHHHhccChhhC
Confidence            999999999999887543 345677888888875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-35  Score=266.96  Aligned_cols=247  Identities=20%  Similarity=0.247  Sum_probs=202.8

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++|.|+.++|+-|++   .+.+|...++.+..+ ..+..+||++||||||||++|+++|.+++.       .||.|
T Consensus       208 ~ikW~DIagl~~AK~lL~E---AVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNV  276 (491)
T KOG0738|consen  208 NIKWDDIAGLHEAKKLLKE---AVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNV  276 (491)
T ss_pred             CcChHhhcchHHHHHHHHH---HHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEe
Confidence            3568999999999999998   677888778777655 468899999999999999999999999987       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCC-CCchhHHHHHHHHHhhccC-------CcEEEEE
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA-DDKDYGIEALEEIMSVMDG-------GKVVVIF  313 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~-~~~~~~~~~~~~ll~~~~~-------~~~~~i~  313 (445)
                      +.+.+.++|.|++++.++=+|+-|+   +++|||||||+|+++|+. +.++.++++-++||.+||+       .++++|+
T Consensus       277 SsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL  356 (491)
T KOG0738|consen  277 SSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL  356 (491)
T ss_pred             chhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence            9999999999999999999998884   699999999999998875 4689999999999999986       3678888


Q ss_pred             ecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      |.|+-+++.    |.+|+|||...|++|.|+.+.|..+++..|...         .+.+.+..+.+++.+.+|++.|+  
T Consensus       357 AATN~PWdi----DEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~---------~~~~~~~~~~lae~~eGySGaDI--  421 (491)
T KOG0738|consen  357 AATNFPWDI----DEALRRRLEKRIYIPLPDAEARSALIKILLRSV---------ELDDPVNLEDLAERSEGYSGADI--  421 (491)
T ss_pred             eccCCCcch----HHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc---------cCCCCccHHHHHHHhcCCChHHH--
Confidence            888888874    999999999999999999999999999988875         55778888999999998885544  


Q ss_pred             ccCchhhHHHHHHHHHhhhh-hhccC-------CCChhhhhhccHHHHHHHHHHHHhcC
Q 013316          394 EMNGGLVDPMLVNARENLDL-RLSFD-------CLDTDELRTITLEDLEAGLKLLLRLG  444 (445)
Q Consensus       394 ~~n~r~l~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~i~~~d~~~a~~~~~~~~  444 (445)
                             .+++..|--.... ++.+.       ...++-...|+.+||+.|+++++|.+
T Consensus       422 -------~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv  473 (491)
T KOG0738|consen  422 -------TNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV  473 (491)
T ss_pred             -------HHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence                   4444433221111 11111       11122224699999999999988764

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-34  Score=272.43  Aligned_cols=249  Identities=22%  Similarity=0.309  Sum_probs=204.9

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ....|+++.++++++.+|..   ++..|-++++.+..++...|.+||++||||||||++|+++|.+.+.       +|+.
T Consensus       506 PdVtW~dIGaL~~vR~eL~~---aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~-------NFis  575 (802)
T KOG0733|consen  506 PDVTWDDIGALEEVRLELNM---AILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA-------NFIS  575 (802)
T ss_pred             CCCChhhcccHHHHHHHHHH---HHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC-------ceEe
Confidence            35679999999999998887   6777888888888888899999999999999999999999999888       9999


Q ss_pred             eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      +....|.++|+|+++..++.+|..|+   +||||+||+|+|.++|+.+....+.+++++||..||+    ..+.||+||+
T Consensus       576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATN  655 (802)
T KOG0733|consen  576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATN  655 (802)
T ss_pred             ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecC
Confidence            99999999999999999999999885   5999999999999999988888899999999999986    5689999998


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH--HHHHHhhh
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE--KETTEKQR  392 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~  392 (445)
                      +.+..     ||+++|  |||..++++.|+.+|+.+||+...+...       ..++++++.+.++....  .|+     
T Consensus       656 RPDiI-----DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k-------~pl~~dVdl~eia~~~~c~gft-----  718 (802)
T KOG0733|consen  656 RPDII-----DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTK-------PPLSSDVDLDEIARNTKCEGFT-----  718 (802)
T ss_pred             CCccc-----chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCC-------CCCCcccCHHHHhhcccccCCc-----
Confidence            88775     999998  9999999999999999999999887421       36788899998886654  555     


Q ss_pred             cccCchhhHHHHHHHHH-hhhhhhcc-C-CCChhh----hhhccHHHHHHHHHHHHhc
Q 013316          393 REMNGGLVDPMLVNARE-NLDLRLSF-D-CLDTDE----LRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~-~~~~~~~~-~-~~~~~~----~~~i~~~d~~~a~~~~~~~  443 (445)
                          |++|-.++.+|-- .+..++.. . ..++-.    ...+|..||++|++.++|.
T Consensus       719 ----GADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS  772 (802)
T KOG0733|consen  719 ----GADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS  772 (802)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence                5555666654421 12222210 0 111111    3357888999999988764

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-33  Score=268.31  Aligned_cols=200  Identities=20%  Similarity=0.275  Sum_probs=176.4

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|.+|.|.+....+|.+++...+    +++.+..++..+|.+|||+||||||||++|++||.+++.       ||+.+
T Consensus       186 nv~f~diGG~d~~~~el~~li~~i~----~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~i  254 (802)
T KOG0733|consen  186 NVSFSDIGGLDKTLAELCELIIHIK----HPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSI  254 (802)
T ss_pred             CcchhhccChHHHHHHHHHHHHHhc----CchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEee
Confidence            3468999999999999998776544    666667778889999999999999999999999999988       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--------CcEEEEE
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--------GKVVVIF  313 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~~i~  313 (445)
                      ++..+++.+.|+++++++++|++|.   +||+||||||++.|+|...+.++.++++.+|+..||+        ..++||+
T Consensus       255 sApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg  334 (802)
T KOG0733|consen  255 SAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG  334 (802)
T ss_pred             cchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence            9999999999999999999999985   5999999999999999988899999999999999985        4588999


Q ss_pred             ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH
Q 013316          314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE  389 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  389 (445)
                      ||++.+..     ||+|||  |||+.|.+..|+..+|.+||+..++..         .++..++.+-++.++.+|.++
T Consensus       335 ATnRPDsl-----DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l---------rl~g~~d~~qlA~lTPGfVGA  398 (802)
T KOG0733|consen  335 ATNRPDSL-----DPALRRAGRFDREICLGVPSETAREEILRIICRGL---------RLSGDFDFKQLAKLTPGFVGA  398 (802)
T ss_pred             cCCCCccc-----CHHHhccccccceeeecCCchHHHHHHHHHHHhhC---------CCCCCcCHHHHHhcCCCccch
Confidence            98877654     999999  999999999999999999999998875         456677777777777666633

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=100.00  E-value=1e-32  Score=238.70  Aligned_cols=230  Identities=25%  Similarity=0.313  Sum_probs=181.2

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++++||+++|+.-+-+.+++..|.+.       +..-|.+||||||||||||++||++|.+.+.       ||+.+
T Consensus       117 ~it~ddViGqEeAK~kcrli~~yLenPe~F-------g~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~v  182 (368)
T COG1223         117 DITLDDVIGQEEAKRKCRLIMEYLENPERF-------GDWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLV  182 (368)
T ss_pred             cccHhhhhchHHHHHHHHHHHHHhhChHHh-------cccCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEe
Confidence            446889999999998877777777666443       3467899999999999999999999999877       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCC-chhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~-~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      .++.++++++|+....+..+++.|   .+||+||||+|.++-.|...+ ...-.+++|.||..||+    ..++.|+||+
T Consensus       183 kat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN  262 (368)
T COG1223         183 KATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN  262 (368)
T ss_pred             chHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence            999999999999999999999776   469999999999987654221 22234889999999986    4588899988


Q ss_pred             chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316          317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  396 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n  396 (445)
                      +....     ||++|+||...|+|..|+.+|+.+|++.+++++         .+..++..+.+.+...+.+         
T Consensus       263 ~p~~L-----D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~---------Plpv~~~~~~~~~~t~g~S---------  319 (368)
T COG1223         263 RPELL-----DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF---------PLPVDADLRYLAAKTKGMS---------  319 (368)
T ss_pred             Chhhc-----CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC---------CCccccCHHHHHHHhCCCC---------
Confidence            76654     999999999999999999999999999999986         5566677777777766655         


Q ss_pred             chhhHHH-HHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          397 GGLVDPM-LVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       397 ~r~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      +|+++.- +..|    ..+.     -.++...|+.+|++.|+++.
T Consensus       320 gRdikekvlK~a----Lh~A-----i~ed~e~v~~edie~al~k~  355 (368)
T COG1223         320 GRDIKEKVLKTA----LHRA-----IAEDREKVEREDIEKALKKE  355 (368)
T ss_pred             chhHHHHHHHHH----HHHH-----HHhchhhhhHHHHHHHHHhh
Confidence            4443322 2222    1111     11244479999999999863

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-32  Score=237.42  Aligned_cols=234  Identities=21%  Similarity=0.286  Sum_probs=189.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .++-+.|.+...+++++   ...+|-.+++++..++...|.++|+|||||||||.+||++|+...+       .|+.++.
T Consensus       145 tYeMiGgLd~QIkeIkE---VIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-------~firvsg  214 (404)
T KOG0728|consen  145 TYEMIGGLDKQIKEIKE---VIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVSG  214 (404)
T ss_pred             HHHHhccHHHHHHHHHH---HHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-------EEEEech
Confidence            45558888877777776   5667888999999999999999999999999999999999999888       9999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHH---hhccC----CcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM---SVMDG----GKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll---~~~~~----~~~~~i~a~~  316 (445)
                      |.++.+|+|+....++.+|--|   .++|+|.||||++.++|..++.....++|..+|   .++|+    .++-+|+||+
T Consensus       215 selvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatn  294 (404)
T KOG0728|consen  215 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN  294 (404)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecc
Confidence            9999999999999999998655   569999999999999887655445556666544   44554    6799999988


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      +-++.     ||+|++  |+|+.|+||+|+.+.+.+|++.+-+++         .+...++...+++.+.+.        
T Consensus       295 ridil-----d~allrpgridrkiefp~p~e~ar~~ilkihsrkm---------nl~rgi~l~kiaekm~ga--------  352 (404)
T KOG0728|consen  295 RIDIL-----DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM---------NLTRGINLRKIAEKMPGA--------  352 (404)
T ss_pred             ccccc-----cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh---------chhcccCHHHHHHhCCCC--------
Confidence            76654     899998  999999999999999999999988876         445666666666555443        


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                       .+.+++.++..|         +..+-.+.+.-+|+|||+-|+.++..
T Consensus       353 -sgaevk~vctea---------gm~alrerrvhvtqedfemav~kvm~  390 (404)
T KOG0728|consen  353 -SGAEVKGVCTEA---------GMYALRERRVHVTQEDFEMAVAKVMQ  390 (404)
T ss_pred             -ccchhhhhhhhh---------hHHHHHHhhccccHHHHHHHHHHHHh
Confidence             377888888877         22333456678999999999887643

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=7.4e-33  Score=238.63  Aligned_cols=234  Identities=20%  Similarity=0.286  Sum_probs=194.3

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...+.++.|.+-.|+++++   .+.+|+.+.+++.+++..+|.+||+|||||||||++|+++|+....       .|+.+
T Consensus       151 dvsy~diggld~qkqeire---avelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a-------~firv  220 (408)
T KOG0727|consen  151 DVSYADIGGLDVQKQEIRE---AVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-------AFIRV  220 (408)
T ss_pred             CccccccccchhhHHHHHH---HHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-------heeee
Confidence            4567789999999999998   6788999999999999999999999999999999999999998766       89999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHH---HHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALE---EIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~---~ll~~~~~----~~~~~i~a  314 (445)
                      ..|.++.+|.|+.+..++++|+.|+   ++|+||||||+++.+|-+.+....++++.   +||.+|++    .++-+|+|
T Consensus       221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima  300 (408)
T KOG0727|consen  221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA  300 (408)
T ss_pred             ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence            9999999999999999999998774   59999999999999997766666666555   55666665    46899999


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |++.++.     ||+|++  |+|++|+||.|+..+.+.++....+++         .++++++.+.+...-.        
T Consensus       301 tnradtl-----dpallrpgrldrkiefplpdrrqkrlvf~titskm---------~ls~~vdle~~v~rpd--------  358 (408)
T KOG0727|consen  301 TNRADTL-----DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM---------NLSDEVDLEDLVARPD--------  358 (408)
T ss_pred             cCccccc-----CHhhcCCccccccccCCCCchhhhhhhHHhhhhcc---------cCCcccCHHHHhcCcc--------
Confidence            9988776     999998  999999999999999999999999987         5677877776553322        


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                       ...+.++..+++.|         +..+-.+++..|...||+++.+..
T Consensus       359 -kis~adi~aicqea---------gm~avr~nryvvl~kd~e~ay~~~  396 (408)
T KOG0727|consen  359 -KISGADINAICQEA---------GMLAVRENRYVVLQKDFEKAYKTV  396 (408)
T ss_pred             -ccchhhHHHHHHHH---------hHHHHHhcceeeeHHHHHHHHHhh
Confidence             23466677777766         222234456689999999988753

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.6e-32  Score=268.88  Aligned_cols=246  Identities=21%  Similarity=0.265  Sum_probs=193.3

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|+++.|.+++|..|.+   .+.+|+.+++++-. +.+...+||||||||||||.+|+++|.++.-       .|+.+
T Consensus       668 nV~WdDVGGLeevK~eIld---TIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSV  736 (953)
T KOG0736|consen  668 NVSWDDVGGLEEVKTEILD---TIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSV  736 (953)
T ss_pred             ccchhcccCHHHHHHHHHH---HhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhcee-------eEEee
Confidence            5679999999999999998   56778888887653 3456789999999999999999999999887       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCC--CCCchhHHHHHHHHHhhccC------CcEEEEE
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQK--ADDKDYGIEALEEIMSVMDG------GKVVVIF  313 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~--~~~~~~~~~~~~~ll~~~~~------~~~~~i~  313 (445)
                      ...+|...|+|++++++|++|++|   .+||||+||+|+++|+|+  ++++..-.+++++||..||+      ..++||+
T Consensus       737 KGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG  816 (953)
T KOG0736|consen  737 KGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG  816 (953)
T ss_pred             cCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence            999999999999999999999887   469999999999999887  34566777999999999986      4689999


Q ss_pred             ecCchhHHHHHhhCccccc--ccccceeCCCCC-HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHh
Q 013316          314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFN-SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK  390 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  390 (445)
                      ||++.+..     ||+|+|  |||+.+++.+.+ .+....+++...++.         +++++++...+++.+....   
T Consensus       817 ATNRPDLL-----DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF---------kLdedVdL~eiAk~cp~~~---  879 (953)
T KOG0736|consen  817 ATNRPDLL-----DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF---------KLDEDVDLVEIAKKCPPNM---  879 (953)
T ss_pred             cCCCcccc-----ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc---------cCCCCcCHHHHHhhCCcCC---
Confidence            99988776     999999  999999999987 566777888776664         7888888877776653322   


Q ss_pred             hhcccCchhhHHHHHHHHHhhhhhh----ccC----CCChhhhhhccHHHHHHHHHHHHhc
Q 013316          391 QRREMNGGLVDPMLVNARENLDLRL----SFD----CLDTDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       391 ~~~~~n~r~l~~~~~~~~~~~~~~~----~~~----~~~~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                           .|+++=.++-.|.-.+..|.    ..+    .........|+.|||.++.+++.|.
T Consensus       880 -----TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS  935 (953)
T KOG0736|consen  880 -----TGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS  935 (953)
T ss_pred             -----chhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence                 13333333322222222221    111    2234556789999999999988763

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.2e-32  Score=256.02  Aligned_cols=209  Identities=20%  Similarity=0.279  Sum_probs=179.5

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|+++-|.+++|++|.+.+++++-|.+...    ++.+-|.+|||.||||||||++||++|.+.+.       ||+..
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftr----LGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V-------PFF~~  368 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTR----LGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV-------PFFYA  368 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHHhcCcHHhhh----ccCcCCCceEEeCCCCCchhHHHHHhhcccCC-------CeEec
Confidence            45689999999999999999999887766655    45567889999999999999999999999877       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS  317 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~  317 (445)
                      +.|.+-..|+|....+++++|..|+   +|||||||||++..+|......+....+++||..||+    ..|+||+||+.
T Consensus       369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf  448 (752)
T KOG0734|consen  369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF  448 (752)
T ss_pred             cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence            9999999999999999999998885   5999999999999998765555888999999999997    45888888776


Q ss_pred             hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      .+..     |++|.|  |||++|.+|.||..-|.+|++.|+++.         .++.++++..++.-..+++        
T Consensus       449 pe~L-----D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki---------~~~~~VD~~iiARGT~GFs--------  506 (752)
T KOG0734|consen  449 PEAL-----DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI---------PLDEDVDPKIIARGTPGFS--------  506 (752)
T ss_pred             hhhh-----hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC---------CcccCCCHhHhccCCCCCc--------
Confidence            5543     899998  999999999999999999999999985         6677888888775554444        


Q ss_pred             CchhhHHHHHHH
Q 013316          396 NGGLVDPMLVNA  407 (445)
Q Consensus       396 n~r~l~~~~~~~  407 (445)
                       +.+|.|++..|
T Consensus       507 -GAdLaNlVNqA  517 (752)
T KOG0734|consen  507 -GADLANLVNQA  517 (752)
T ss_pred             -hHHHHHHHHHH
Confidence             66677777665

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-32  Score=241.14  Aligned_cols=235  Identities=19%  Similarity=0.306  Sum_probs=193.2

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      .+.+.++.|.++..++|++   .+.+|+.+++.+..++..+|.+|++||+||||||.+|+++|.....       .|..+
T Consensus       181 ~Ety~diGGle~QiQEiKE---svELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA-------TFlRv  250 (440)
T KOG0726|consen  181 QETYADIGGLESQIQEIKE---SVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA-------TFLRV  250 (440)
T ss_pred             hhhhcccccHHHHHHHHHH---hhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch-------hhhhh
Confidence            4567889999988888887   7889999999999999999999999999999999999999998766       89999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~----~~~~~i~a  314 (445)
                      -.|+|+.+|.|+.++.++++|+-|   .++|+||||||++..+|.+.+....+++|..+|.+   +++    +.+-||+|
T Consensus       251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA  330 (440)
T KOG0726|consen  251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA  330 (440)
T ss_pred             hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence            999999999999999999999877   46999999999999999765555555666655544   443    78999999


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |+.-.     ..||+|.|  |+|+.|.||.|+......|+..+.+++         .+..++..+.+..-         +
T Consensus       331 Tnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M---------tl~~dVnle~li~~---------k  387 (440)
T KOG0726|consen  331 TNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM---------TLAEDVNLEELIMT---------K  387 (440)
T ss_pred             ccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeeccc---------chhccccHHHHhhc---------c
Confidence            66544     34999998  999999999999999999999888887         55667766665422         1


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      ....++++++++..|         +..+-.+.+..++.+||..|.+.+.
T Consensus       388 ddlSGAdIkAictEa---------GllAlRerRm~vt~~DF~ka~e~V~  427 (440)
T KOG0726|consen  388 DDLSGADIKAICTEA---------GLLALRERRMKVTMEDFKKAKEKVL  427 (440)
T ss_pred             cccccccHHHHHHHH---------hHHHHHHHHhhccHHHHHHHHHHHH
Confidence            244588888888877         2222345677999999999988653

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-31  Score=253.61  Aligned_cols=322  Identities=20%  Similarity=0.230  Sum_probs=241.9

Q ss_pred             HHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc--ccccCCCCcHHHHHHHcCCHHHHHHHH
Q 013316           28 AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL--EAQNMYGETPLHMAAKNGCNEAAKLLL  105 (445)
Q Consensus        28 ~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v--~~~d~~g~tpLh~A~~~g~~~~~~~Ll  105 (445)
                      .+...|...|..+....+  +..++...... .+++|-..+.+++.+|.++  .++.....+|..+.+.+|+++.+.-.+
T Consensus        19 ~l~~~L~~~G~~v~~a~~--~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~   95 (464)
T COG2204          19 LLEQALELAGYEVVTAES--AEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEAL   95 (464)
T ss_pred             HHHHHHHHcCCeEEEeCC--HHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHH
Confidence            445567777877777764  77888876666 6777777777776666554  234444678888889999999999999


Q ss_pred             hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHHHHHhhhcchHHHHHHHHHH
Q 013316          106 AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWA  185 (445)
Q Consensus       106 ~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~g~~~~~~~l~~~~  185 (445)
                      +.||.            ||+.++.+...+...+...-.........      .............++|.++.++++++.+
T Consensus        96 k~GA~------------Dfl~KP~~~~~L~~~v~ral~~~~~~~e~------~~~~~~~~~~~~~liG~S~am~~l~~~i  157 (464)
T COG2204          96 RLGAF------------DFLEKPFDLDRLLAIVERALELRELQREN------RRSLKRAKSLGGELVGESPAMQQLRRLI  157 (464)
T ss_pred             hcCcc------------eeeeCCCCHHHHHHHHHHHHHHhhhhhhh------hhhhhccccccCCceecCHHHHHHHHHH
Confidence            99999            89999998777776663332211111000      0000111123456999999999999988


Q ss_pred             HHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-----ccccccCCchhH
Q 013316          186 KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-----LVGEFVGHTGPK  260 (445)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~-----l~~~~~g~~~~~  260 (445)
                      .++              +....+|||+|++||||.++||+||+.+.+    ..+||+.+||+.     +.+++|||....
T Consensus       158 ~kv--------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R----~~~PFVavNcaAip~~l~ESELFGhekGA  219 (464)
T COG2204         158 AKV--------------APSDASVLITGESGTGKELVARAIHQASPR----AKGPFIAVNCAAIPENLLESELFGHEKGA  219 (464)
T ss_pred             HHH--------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcc----cCCCceeeecccCCHHHHHHHhhcccccC
Confidence            877              678889999999999999999999999988    445999999998     456699984432


Q ss_pred             H-------HHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------------cEEEEEecCchhH
Q 013316          261 T-------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPM  320 (445)
Q Consensus       261 ~-------~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~~~~i~a~~~~~~  320 (445)
                      +       ...|+.|.||+||||||           ++++.++|.+||+.++++             ++.||+||+.+..
T Consensus       220 FTGA~~~r~G~fE~A~GGTLfLDEI-----------~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~  288 (464)
T COG2204         220 FTGAITRRIGRFEQANGGTLFLDEI-----------GEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE  288 (464)
T ss_pred             cCCcccccCcceeEcCCceEEeecc-----------ccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH
Confidence            2       34899999999999999           566669999999999863             3578888877765


Q ss_pred             HHHHh--hCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          321 KRVIA--SNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       321 ~~~~~--~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ..+.+  -.+.|..|+. ..|.+|++.  .+|+..++++|+++.+.+.+    .-...++++++..+..+.|      ||
T Consensus       289 ~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~----~~~~~~s~~a~~~L~~y~W------PG  358 (464)
T COG2204         289 EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELG----RPPKGFSPEALAALLAYDW------PG  358 (464)
T ss_pred             HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcC----CCCCCCCHHHHHHHHhCCC------Ch
Confidence            54321  1255666885 456777776  79999999999999887665    3356888999999999998      99


Q ss_pred             CchhhHHHHHHHHH
Q 013316          396 NGGLVDPMLVNARE  409 (445)
Q Consensus       396 n~r~l~~~~~~~~~  409 (445)
                      |.|+|+|+++++.-
T Consensus       359 NVREL~N~ver~~i  372 (464)
T COG2204         359 NVRELENVVERAVI  372 (464)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999843

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.2e-31  Score=227.40  Aligned_cols=235  Identities=24%  Similarity=0.327  Sum_probs=189.2

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      .+.+++|.|.+..+++|.   ..+.+|..+++.+..++..+|.++|+|||||||||++||+.|...+.       .|..+
T Consensus       167 tE~YsDiGGldkQIqELv---EAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-------TFLKL  236 (424)
T KOG0652|consen  167 TEQYSDIGGLDKQIQELV---EAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-------TFLKL  236 (424)
T ss_pred             cccccccccHHHHHHHHH---HHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-------hHHHh
Confidence            346778999986655554   47889999999999999999999999999999999999999998877       88889


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHh---hccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMS---VMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~---~~~~----~~~~~i~a  314 (445)
                      ....|+..|+|...+.+++.|..|+   ++||||||+|.+..+|.++.....+++|..+|.   ++++    .++-||+|
T Consensus       237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA  316 (424)
T KOG0652|consen  237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA  316 (424)
T ss_pred             cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence            9999999999999999999998774   599999999999999987665556677766554   4444    57899999


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |++.+..     ||+|++  |+|++|+||.|+.+.+..|++.+-+++.         .++++..+.++.-.         
T Consensus       317 TNRvDiL-----DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn---------v~~DvNfeELaRsT---------  373 (424)
T KOG0652|consen  317 TNRVDIL-----DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN---------VSDDVNFEELARST---------  373 (424)
T ss_pred             ccccccc-----CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC---------CCCCCCHHHHhhcc---------
Confidence            8887665     899887  9999999999999999999999988873         45677666655322         


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      ...|+.++++++-.|-..+ +|        .+...|+-+||.++|.+++
T Consensus       374 ddFNGAQcKAVcVEAGMiA-LR--------r~atev~heDfmegI~eVq  413 (424)
T KOG0652|consen  374 DDFNGAQCKAVCVEAGMIA-LR--------RGATEVTHEDFMEGILEVQ  413 (424)
T ss_pred             cccCchhheeeehhhhHHH-Hh--------cccccccHHHHHHHHHHHH
Confidence            2568888888876662222 11        1223699999999998765

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.8e-30  Score=235.51  Aligned_cols=208  Identities=25%  Similarity=0.386  Sum_probs=179.1

Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCC-CCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316          162 DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGL-KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  240 (445)
Q Consensus       162 ~~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~  240 (445)
                      .+....|++|.|.+.+++++++   .+.+|.++++++. .--..++.+||++||||||||++|+++|++.+.       +
T Consensus        85 ~~I~v~f~DIggLe~v~~~L~e---~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga-------~  154 (386)
T KOG0737|consen   85 SEIGVSFDDIGGLEEVKDALQE---LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA-------N  154 (386)
T ss_pred             hhceeehhhccchHHHHHHHHH---HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC-------C
Confidence            4567789999999999999998   5788888998873 223457889999999999999999999999888       9


Q ss_pred             eEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEE
Q 013316          241 VTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVV  311 (445)
Q Consensus       241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~  311 (445)
                      |+.+..+.+.++|||++.+.++.+|..|   +++||||||+|++...|++.+++....+-+++....|+      .++.|
T Consensus       155 fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV  234 (386)
T KOG0737|consen  155 FINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLV  234 (386)
T ss_pred             cceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEE
Confidence            9999999999999999999999999877   57999999999999988877788888888899988875      24666


Q ss_pred             EEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          312 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       312 i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      ++||++. .+    +|.++.||++.+++++.|+..+|.+|++.+++..         +++++++...++....+|++.|+
T Consensus       235 lgATNRP-~D----lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e---------~~e~~vD~~~iA~~t~GySGSDL  300 (386)
T KOG0737|consen  235 LGATNRP-FD----LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE---------KLEDDVDLDEIAQMTEGYSGSDL  300 (386)
T ss_pred             EeCCCCC-cc----HHHHHHHhCcceeeeCCCchhhHHHHHHHHhccc---------ccCcccCHHHHHHhcCCCcHHHH
Confidence            6665433 33    3899999999999999999999999999999886         56789999999999999986666


Q ss_pred             hc
Q 013316          392 RR  393 (445)
Q Consensus       392 ~~  393 (445)
                      +.
T Consensus       301 ke  302 (386)
T KOG0737|consen  301 KE  302 (386)
T ss_pred             HH
Confidence            54

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-30  Score=225.51  Aligned_cols=235  Identities=19%  Similarity=0.241  Sum_probs=186.3

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ....+.++.|..+.++.+++   .+.+|+-+++.+..++..+|.+||+|||||||||++||++|.....       .|+.
T Consensus       172 pdvty~dvggckeqieklre---vve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfir  241 (435)
T KOG0729|consen  172 PDVTYSDVGGCKEQIEKLRE---VVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIR  241 (435)
T ss_pred             CCcccccccchHHHHHHHHH---HHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEe
Confidence            34567789998888777777   5667777888888899999999999999999999999999987766       9999


Q ss_pred             eecccccccccCCchhHHHHHHHHccC---cEEEEcCccccccCCCCCCchhHHHHHHHHHhhc---cC----CcEEEEE
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM---DG----GKVVVIF  313 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a~~---~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~---~~----~~~~~i~  313 (445)
                      +-.|.|+.+|+|+....++++|+-|+.   ||||+||||.+...|-+++.....++|..+|..+   ++    +++-|++
T Consensus       242 vigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm  321 (435)
T KOG0729|consen  242 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM  321 (435)
T ss_pred             ehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence            999999999999999999999988854   9999999999999887766555567776655544   43    7899999


Q ss_pred             ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      ||++..+.     ||+|.+  |+|++++|..|+-+.+..|++.+.+.++         ...++-.+.    +++.+.   
T Consensus       322 atnrpdtl-----dpallrpgrldrkvef~lpdlegrt~i~kihaksms---------verdir~el----larlcp---  380 (435)
T KOG0729|consen  322 ATNRPDTL-----DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS---------VERDIRFEL----LARLCP---  380 (435)
T ss_pred             ecCCCCCc-----CHhhcCCcccccceeccCCcccccceeEEEeccccc---------cccchhHHH----HHhhCC---
Confidence            98887765     899998  9999999999999999999998877653         223333333    444441   


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                        -..+.+++.++..|         +..+-...+...|+.||.+|+.++
T Consensus       381 --nstgaeirsvctea---------gmfairarrk~atekdfl~av~kv  418 (435)
T KOG0729|consen  381 --NSTGAEIRSVCTEA---------GMFAIRARRKVATEKDFLDAVNKV  418 (435)
T ss_pred             --CCcchHHHHHHHHh---------hHHHHHHHhhhhhHHHHHHHHHHH
Confidence              13377888888776         222233455678999999998764

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.6e-29  Score=250.80  Aligned_cols=240  Identities=24%  Similarity=0.347  Sum_probs=192.8

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|.++.|.+.+++.+++.   +.++..+++.+...+..++.++|||||||||||++|+++|.+++.       +|+.+
T Consensus       238 ~v~~~diggl~~~k~~l~e~---v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~-------~fi~v  307 (494)
T COG0464         238 DVTLDDIGGLEEAKEELKEA---IETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS-------RFISV  307 (494)
T ss_pred             CcceehhhcHHHHHHHHHHH---HHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC-------eEEEe
Confidence            45678899999999999984   445555666554456678889999999999999999999998877       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS  317 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~  317 (445)
                      ..+++.++|+|+++++++.+|..|.   +|||||||+|++.+.++.+......+++++|+..|++    ..+++|++|+.
T Consensus       308 ~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~  387 (494)
T COG0464         308 KGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR  387 (494)
T ss_pred             eCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence            9999999999999999999999886   6999999999999999876666667999999999974    55777888776


Q ss_pred             hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ....     ||++++  ||+..|+||+||.+++.+|++.++.+...       .+..+++.+.++....+++        
T Consensus       388 p~~l-----d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~-------~~~~~~~~~~l~~~t~~~s--------  447 (494)
T COG0464         388 PDDL-----DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP-------PLAEDVDLEELAEITEGYS--------  447 (494)
T ss_pred             cccc-----CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC-------cchhhhhHHHHHHHhcCCC--------
Confidence            5554     899999  99999999999999999999999986431       1344666666666554443        


Q ss_pred             CchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHhc
Q 013316          396 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       396 n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                       +.++.+++..|.........        ...||.+||..|++.+.|.
T Consensus       448 -gadi~~i~~ea~~~~~~~~~--------~~~~~~~~~~~a~~~~~p~  486 (494)
T COG0464         448 -GADIAALVREAALEALREAR--------RREVTLDDFLDALKKIKPS  486 (494)
T ss_pred             -HHHHHHHHHHHHHHHHHHhc--------cCCccHHHHHHHHHhcCCC
Confidence             77788888877443322211        3479999999999987663

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.96  E-value=7e-29  Score=239.68  Aligned_cols=235  Identities=21%  Similarity=0.274  Sum_probs=183.0

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++|+|.+..+++|++.   +.++..+++.+...+..+|.++||+||||||||++|+++|+.++.       +|+.+
T Consensus       141 ~v~~~digGl~~~k~~l~~~---v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-------~fi~i  210 (398)
T PTZ00454        141 DVTYSDIGGLDIQKQEIREA---VELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-------TFIRV  210 (398)
T ss_pred             CCCHHHcCCHHHHHHHHHHH---HHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence            45688999999999999984   445555666666666778999999999999999999999998766       89999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a  314 (445)
                      .++.+...|+|++...++.+|..+   .++||||||||.+.+++.+...   ....+.+..|+..+++    ..+++|++
T Consensus       211 ~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~a  290 (398)
T PTZ00454        211 VGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA  290 (398)
T ss_pred             ehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence            999999999999998999998776   5699999999999987643322   2233556677777764    46788888


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |+....     .||++++  ||+..|+|+.|+.+++.+|++.++.+.         .+.++++.+.++..+.+       
T Consensus       291 TN~~d~-----LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~---------~l~~dvd~~~la~~t~g-------  349 (398)
T PTZ00454        291 TNRADT-----LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM---------NLSEEVDLEDFVSRPEK-------  349 (398)
T ss_pred             cCCchh-----CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC---------CCCcccCHHHHHHHcCC-------
Confidence            765432     3899887  999999999999999999999988765         34556666666655443       


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                        .+++++++++..|......         .+...|+.+||.+|++.+.
T Consensus       350 --~sgaDI~~l~~eA~~~A~r---------~~~~~i~~~df~~A~~~v~  387 (398)
T PTZ00454        350 --ISAADIAAICQEAGMQAVR---------KNRYVILPKDFEKGYKTVV  387 (398)
T ss_pred             --CCHHHHHHHHHHHHHHHHH---------cCCCccCHHHHHHHHHHHH
Confidence              4578888998888433221         1234799999999998864

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.4e-29  Score=223.34  Aligned_cols=204  Identities=19%  Similarity=0.257  Sum_probs=167.7

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ....|+++.|.+.+|+.|++   .+.+|-..++++..- ..+..++||||||||||+.+|+++|.+.+.       .|+.
T Consensus       128 PNVkWsDVAGLE~AKeALKE---AVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFS  196 (439)
T KOG0739|consen  128 PNVKWSDVAGLEGAKEALKE---AVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFS  196 (439)
T ss_pred             CCCchhhhccchhHHHHHHh---heeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEE
Confidence            45689999999999999998   677777777777643 457889999999999999999999999876       9999


Q ss_pred             eecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEec
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAG  315 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~  315 (445)
                      ++.|+|+++|.|++++.+..+|+-|   +++||||||||.++.+|+.+..+..+++-.+||.+|++     ..+.|++||
T Consensus       197 vSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT  276 (439)
T KOG0739|consen  197 VSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT  276 (439)
T ss_pred             eehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence            9999999999999999999999776   56999999999999999988899999999999999986     345555554


Q ss_pred             CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                       +.++.    .|.++||||+..|++|.|+...|..+++.++.....       .++ +.+...+.....+|++.|+
T Consensus       277 -NiPw~----LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~-------~LT-~~d~~eL~~kTeGySGsDi  339 (439)
T KOG0739|consen  277 -NIPWV----LDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH-------VLT-EQDFKELARKTEGYSGSDI  339 (439)
T ss_pred             -CCchh----HHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc-------ccc-hhhHHHHHhhcCCCCcCce
Confidence             44444    389999999999999999999999999998877532       222 2244455555666665543

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.96  E-value=9.4e-29  Score=240.35  Aligned_cols=235  Identities=23%  Similarity=0.319  Sum_probs=181.8

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++|+|.++.++++.+.   +..+..+++.+...+..+|.++||+||||||||++|+++|+.++.       +|+.++
T Consensus       128 ~~~~di~Gl~~~~~~l~~~---i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-------~~i~v~  197 (389)
T PRK03992        128 VTYEDIGGLEEQIREVREA---VELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV  197 (389)
T ss_pred             CCHHHhCCcHHHHHHHHHH---HHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC-------CEEEee
Confidence            4577899999999999885   445556666666677788999999999999999999999999876       899999


Q ss_pred             cccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchh---HHHHHHHHHhhccC----CcEEEEEec
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDY---GIEALEEIMSVMDG----GKVVVIFAG  315 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~---~~~~~~~ll~~~~~----~~~~~i~a~  315 (445)
                      ++.+.+.|+|+++..++.+|+.+.   ++||||||||.+.++++++....   ..+.+..++..++.    ++++||++|
T Consensus       198 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aT  277 (389)
T PRK03992        198 GSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAAT  277 (389)
T ss_pred             hHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEec
Confidence            999999999999999999998764   59999999999998776433222   23344556655653    578888887


Q ss_pred             CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      +....     .|+++++  ||+..|+||.|+.+++.+|++.++.+.         .+..+++.+.++..+.++       
T Consensus       278 n~~~~-----ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~---------~~~~~~~~~~la~~t~g~-------  336 (389)
T PRK03992        278 NRIDI-----LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM---------NLADDVDLEELAELTEGA-------  336 (389)
T ss_pred             CChhh-----CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC---------CCCCcCCHHHHHHHcCCC-------
Confidence            76532     3899887  999999999999999999999988764         334556666766655444       


Q ss_pred             ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                        +++++++++.+|...+..         +....|+.+||.+|+..+.+
T Consensus       337 --sgadl~~l~~eA~~~a~~---------~~~~~i~~~d~~~A~~~~~~  374 (389)
T PRK03992        337 --SGADLKAICTEAGMFAIR---------DDRTEVTMEDFLKAIEKVMG  374 (389)
T ss_pred             --CHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHhc
Confidence              477788888877432211         12336999999999998865

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.96  E-value=1.7e-28  Score=257.88  Aligned_cols=246  Identities=22%  Similarity=0.297  Sum_probs=189.4

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++++|++.+++.|.+.+   .++..+++.+...+..++.++|||||||||||++|+++|.+++.       +|+.+
T Consensus       449 ~~~~~di~g~~~~k~~l~~~v---~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-------~fi~v  518 (733)
T TIGR01243       449 NVRWSDIGGLEEVKQELREAV---EWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-------NFIAV  518 (733)
T ss_pred             ccchhhcccHHHHHHHHHHHH---HhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence            446889999999999999854   44445555555556678889999999999999999999999876       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC-CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      +++++.++|+|+++..++.+|..|   .++||||||||.+++.++.. ......+++++|+..|++    .+++||++|+
T Consensus       519 ~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn  598 (733)
T TIGR01243       519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATN  598 (733)
T ss_pred             ehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Confidence            999999999999999999999876   45999999999999988643 344566888999999874    5688888877


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      .....     ||++++  ||+..|+||.|+.+++.+|++.++++.         .+.++++.+.++..+.+++       
T Consensus       599 ~~~~l-----d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~---------~~~~~~~l~~la~~t~g~s-------  657 (733)
T TIGR01243       599 RPDIL-----DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM---------PLAEDVDLEELAEMTEGYT-------  657 (733)
T ss_pred             ChhhC-----CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHcCCCC-------
Confidence            65433     899987  999999999999999999999887764         4456677778777776665       


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCC----C-----ChhhhhhccHHHHHHHHHHHHhc
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDC----L-----DTDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                        ++++.+++.+|......+.....    .     +......|+.+||.+|++.++|.
T Consensus       658 --gadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps  713 (733)
T TIGR01243       658 --GADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS  713 (733)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence              55556666555433222211100    0     01123479999999999987763

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-28  Score=239.19  Aligned_cols=203  Identities=20%  Similarity=0.281  Sum_probs=176.9

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      -.|+++.|+.++++.+.+.   +..|.+.++.+.....+.+.++|+|||||||||.+|-++|..++.       .|+.+.
T Consensus       664 i~w~digg~~~~k~~l~~~---i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvK  733 (952)
T KOG0735|consen  664 IRWEDIGGLFEAKKVLEEV---IEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVK  733 (952)
T ss_pred             CCceecccHHHHHHHHHHH---HhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEec
Confidence            4588999999999999984   556777778777777778889999999999999999999998877       999999


Q ss_pred             cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCch
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE  318 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~  318 (445)
                      ...+.++|+|.+++++|.+|+.|   ++||||+||+|+++|+|+.++.....++.++||..||+    ..+.+++||++.
T Consensus       734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp  813 (952)
T KOG0735|consen  734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP  813 (952)
T ss_pred             CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence            99999999999999999999877   57999999999999999999999999999999999997    457888888877


Q ss_pred             hHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          319 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       319 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      ++.     ||+|+|  |+|+.++.|.|+..+|.+|++...+..         .++.+++.+-++....+++++|..
T Consensus       814 dli-----DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~---------~~~~~vdl~~~a~~T~g~tgADlq  875 (952)
T KOG0735|consen  814 DLI-----DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL---------LKDTDVDLECLAQKTDGFTGADLQ  875 (952)
T ss_pred             ccc-----CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc---------CCccccchHHHhhhcCCCchhhHH
Confidence            665     999998  999999999999999999999866543         446677888888778777755443

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.5e-29  Score=248.16  Aligned_cols=233  Identities=22%  Similarity=0.326  Sum_probs=185.8

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ....|+++.|.+++|++|.+++..++.|....+    +++..|.++||+||||||||++|+++|.+.+.       ||+.
T Consensus       306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~----lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~s  374 (774)
T KOG0731|consen  306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQE----LGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFS  374 (774)
T ss_pred             CCCccccccCcHHHHHHHHHHHHHhcCHHHHHH----cCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceee
Confidence            346789999999999999999999887766655    55778999999999999999999999999887       9999


Q ss_pred             eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCC----CCchhHHHHHHHHHhhccC----CcEEEE
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA----DDKDYGIEALEEIMSVMDG----GKVVVI  312 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~----~~~~~~~~~~~~ll~~~~~----~~~~~i  312 (445)
                      ++.|+++..++|....+++++|..|+   ++|+||||||.+...|++    ++++.....+++||..||+    ..++++
T Consensus       375 vSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~  454 (774)
T KOG0731|consen  375 VSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL  454 (774)
T ss_pred             echHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence            99999999999999999999998885   599999999999998842    3455566789999999997    458888


Q ss_pred             EecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccC-CcccHHHHHHHHHHHHHH
Q 013316          313 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH-SSCSMDAIAALIEKETTE  389 (445)
Q Consensus       313 ~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  389 (445)
                      ++|++.+..     ||+|+|  |||+.|+++.|+..++.+|++.++++..         ++ +.++...++.+...+   
T Consensus       455 a~tnr~d~l-----d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---------~~~e~~dl~~~a~~t~gf---  517 (774)
T KOG0731|consen  455 AATNRPDIL-----DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---------LDDEDVDLSKLASLTPGF---  517 (774)
T ss_pred             eccCCcccc-----CHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---------CCcchhhHHHHHhcCCCC---
Confidence            888877665     999998  9999999999999999999999998753         22 222222233333222   


Q ss_pred             hhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          390 KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       390 ~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                            -+.+|.|++..|--..         ..+....|+..|+..|++.
T Consensus       518 ------~gadl~n~~neaa~~a---------~r~~~~~i~~~~~~~a~~R  552 (774)
T KOG0731|consen  518 ------SGADLANLCNEAALLA---------ARKGLREIGTKDLEYAIER  552 (774)
T ss_pred             ------cHHHHHhhhhHHHHHH---------HHhccCccchhhHHHHHHH
Confidence                  2667777777661111         1223457888999988873

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.96  E-value=1.7e-28  Score=238.19  Aligned_cols=234  Identities=18%  Similarity=0.282  Sum_probs=180.2

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++|.|.+..++++.+.+   .++..+++.+...+..++.++||+||||||||++|+++|..+..       +|+.+.
T Consensus       180 ~~~~DIgGl~~qi~~l~e~v---~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-------~fi~V~  249 (438)
T PTZ00361        180 ESYADIGGLEQQIQEIKEAV---ELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-------TFLRVV  249 (438)
T ss_pred             CCHHHhcCHHHHHHHHHHHH---HhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-------CEEEEe
Confidence            46788999999999998854   45566666666677788999999999999999999999998765       899999


Q ss_pred             cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCch---hHHHHHHHHHhhccC----CcEEEEEec
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKD---YGIEALEEIMSVMDG----GKVVVIFAG  315 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~---~~~~~~~~ll~~~~~----~~~~~i~a~  315 (445)
                      .+.+.+.|+|++...++.+|..+   .++||||||||.+..++......   ...+.+..|+..+++    ..+.||++|
T Consensus       250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~AT  329 (438)
T PTZ00361        250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMAT  329 (438)
T ss_pred             cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEec
Confidence            99999999999998899999876   45899999999999877532221   223444556666653    568888887


Q ss_pred             CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      +.....     ||++++  ||+..|+|+.|+.+++.+|++.+++++         .+.++++.+.++..+..        
T Consensus       330 Nr~d~L-----DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~---------~l~~dvdl~~la~~t~g--------  387 (438)
T PTZ00361        330 NRIESL-----DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM---------TLAEDVDLEEFIMAKDE--------  387 (438)
T ss_pred             CChHHh-----hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC---------CCCcCcCHHHHHHhcCC--------
Confidence            754332     888876  999999999999999999999998875         34556666666655444        


Q ss_pred             ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                       .+++++++++..|...+..         .+...|+.+||.+|++++.
T Consensus       388 -~sgAdI~~i~~eA~~~Alr---------~~r~~Vt~~D~~~A~~~v~  425 (438)
T PTZ00361        388 -LSGADIKAICTEAGLLALR---------ERRMKVTQADFRKAKEKVL  425 (438)
T ss_pred             -CCHHHHHHHHHHHHHHHHH---------hcCCccCHHHHHHHHHHHH
Confidence             4477788888777333211         2234799999999998864

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.96  E-value=6.9e-28  Score=237.48  Aligned_cols=234  Identities=22%  Similarity=0.319  Sum_probs=177.8

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|+++.|.+.+|+.+.+.....  ......    .+...|.++||+||||||||++|+++|.+++.       +|+.++
T Consensus       225 ~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~----~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~-------~~~~l~  291 (489)
T CHL00195        225 EKISDIGGLDNLKDWLKKRSTSF--SKQASN----YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL-------PLLRLD  291 (489)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHh--hHHHHh----cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEE
Confidence            35788999999998888744322  111222    34467889999999999999999999999887       999999


Q ss_pred             cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCC-CCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKA-DDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  319 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~-~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~  319 (445)
                      ++.+.+.|+|+++.+++++|+.+   .+|||||||||.+.+.++. +......+++..|+..|++  ..+++|++|+...
T Consensus       292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~  371 (489)
T CHL00195        292 VGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID  371 (489)
T ss_pred             hHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence            99999999999999999999765   5699999999999875442 3345566888889988875  4566776655433


Q ss_pred             HHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          320 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       320 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      .     .||+++|  |||..|+|+.|+.++|.+|++.++.+...       ....+++.+.++..+.+++         +
T Consensus       372 ~-----Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-------~~~~~~dl~~La~~T~GfS---------G  430 (489)
T CHL00195        372 L-----LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-------KSWKKYDIKKLSKLSNKFS---------G  430 (489)
T ss_pred             h-----CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-------CcccccCHHHHHhhcCCCC---------H
Confidence            2     3899987  99999999999999999999999987521       1112455666666665555         6


Q ss_pred             hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHhc
Q 013316          398 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       398 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                      +++++++..|......          +...++.+|+..|++.+.|+
T Consensus       431 AdI~~lv~eA~~~A~~----------~~~~lt~~dl~~a~~~~~Pl  466 (489)
T CHL00195        431 AEIEQSIIEAMYIAFY----------EKREFTTDDILLALKQFIPL  466 (489)
T ss_pred             HHHHHHHHHHHHHHHH----------cCCCcCHHHHHHHHHhcCCC
Confidence            7777887777432211          11358999999999998886

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.95  E-value=1e-26  Score=228.59  Aligned_cols=260  Identities=19%  Similarity=0.228  Sum_probs=186.0

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---CCCCe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRV  241 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---~~~~~  241 (445)
                      ...|++|+|.++.++++++.   +.++..+++.+...+..+|.++|||||||||||++|+++++.+......   ....|
T Consensus       178 ~v~~~dIgGl~~~i~~i~~~---v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f  254 (512)
T TIGR03689       178 DVTYADIGGLDSQIEQIRDA---VELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF  254 (512)
T ss_pred             CCCHHHcCChHHHHHHHHHH---HHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence            45688999999999998884   4456666776666777789999999999999999999999998653211   12356


Q ss_pred             EEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCC-CchhHHHHHHHHHhhccC----CcE
Q 013316          242 TEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKV  309 (445)
Q Consensus       242 ~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~----~~~  309 (445)
                      +.+..+.+.++|+|+++..++.+|+.+       .++||||||+|.++++++.+ +.+....++++|+..|++    +++
T Consensus       255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V  334 (512)
T TIGR03689       255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV  334 (512)
T ss_pred             EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence            777888899999999999999888765       35899999999999887643 345566778899999875    568


Q ss_pred             EEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316          310 VVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  387 (445)
Q Consensus       310 ~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  387 (445)
                      ++|++|+....     +||+++|  |||.+|+|+.|+.+++.+|++.++..... +. ..+..........+..++....
T Consensus       335 iVI~ATN~~d~-----LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~-l~-~~l~~~~g~~~a~~~al~~~av  407 (512)
T TIGR03689       335 IVIGASNREDM-----IDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLP-LD-ADLAEFDGDREATAAALIQRAV  407 (512)
T ss_pred             EEEeccCChhh-----CCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCC-ch-HHHHHhcCCCHHHHHHHHHHHH
Confidence            88888766443     3999998  99999999999999999999999875210 00 0000011122223333333221


Q ss_pred             HH------------------h-----hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          388 TE------------------K-----QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       388 ~~------------------~-----~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      ..                  +     ......|+++++++++|...+-.+...     ....-|+.+|+..|+..
T Consensus       408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~-----~~~~~~~~~~l~~a~~~  477 (512)
T TIGR03689       408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT-----GGQVGLRIEHLLAAVLD  477 (512)
T ss_pred             HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh-----cCCcCcCHHHHHHHHHH
Confidence            11                  1     012355889999999997665554431     12247889999988864

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.4e-27  Score=233.62  Aligned_cols=234  Identities=24%  Similarity=0.335  Sum_probs=188.7

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ....|.++.|.+++|+++.+.+..++.|.+..++|    +..|.+++++||||||||++||++|.+.+.       ||+.
T Consensus       145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lG----akiPkGvlLvGpPGTGKTLLAkAvAgEA~V-------PFf~  213 (596)
T COG0465         145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALG----AKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFS  213 (596)
T ss_pred             cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcc----cccccceeEecCCCCCcHHHHHHHhcccCC-------Ccee
Confidence            45678999999999999999999888776666544    567899999999999999999999999777       9999


Q ss_pred             eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCC---CCchhHHHHHHHHHhhccCC----cEEEEE
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDGG----KVVVIF  313 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~---~~~~~~~~~~~~ll~~~~~~----~~~~i~  313 (445)
                      ++.|+++..|+|...+.+|++|.+|+   +||+||||||++...|+.   ++++.-...+++||..||+.    .+++|+
T Consensus       214 iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia  293 (596)
T COG0465         214 ISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA  293 (596)
T ss_pred             ccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence            99999999999999999999999986   599999999999998863   35666678999999999973    477777


Q ss_pred             ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      +|++.+..     ||+|+|  |||++|.++.|+-..|.+|++.+++..         .+++.++...++..+.+++    
T Consensus       294 aTNRpdVl-----D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~---------~l~~~Vdl~~iAr~tpGfs----  355 (596)
T COG0465         294 ATNRPDVL-----DPALLRPGRFDRQILVELPDIKGREQILKVHAKNK---------PLAEDVDLKKIARGTPGFS----  355 (596)
T ss_pred             cCCCcccc-----hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC---------CCCCcCCHHHHhhhCCCcc----
Confidence            77766654     899998  999999999999999999999888775         5677888888777776666    


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                           +.++.|++-.|-- .+.|        .....|+..||.+++..+
T Consensus       356 -----GAdL~nl~NEAal-~aar--------~n~~~i~~~~i~ea~drv  390 (596)
T COG0465         356 -----GADLANLLNEAAL-LAAR--------RNKKEITMRDIEEAIDRV  390 (596)
T ss_pred             -----cchHhhhHHHHHH-HHHH--------hcCeeEeccchHHHHHHH
Confidence                 4455555544311 1111        122356777777776654

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.94  E-value=6.7e-27  Score=235.31  Aligned_cols=234  Identities=22%  Similarity=0.315  Sum_probs=178.5

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++++|.+.+++++.+++..+..+.....    .+...+.++||+||||||||++|+++|..++.       +|+.+
T Consensus        51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~----~g~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~i  119 (495)
T TIGR01241        51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTK----LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFSI  119 (495)
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHh----cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------Ceeec
Confidence            34688999999999999998776554444443    34567889999999999999999999998766       89999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a  314 (445)
                      +++++.+.+.|.+...++++|+.+.   ++||||||||.+.++++.+   ..+.....++.|+..|+.    ..++||++
T Consensus       120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a  199 (495)
T TIGR01241       120 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA  199 (495)
T ss_pred             cHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence            9999999999999999999998874   5999999999999877642   234455778889888864    45788888


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |+....     .||++++  ||+..|+|+.|+.++|.+|++.++...         .+..+++.+.++..+..+      
T Consensus       200 Tn~~~~-----ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~---------~~~~~~~l~~la~~t~G~------  259 (495)
T TIGR01241       200 TNRPDV-----LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK---------KLAPDVDLKAVARRTPGF------  259 (495)
T ss_pred             cCChhh-----cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC---------CCCcchhHHHHHHhCCCC------
Confidence            765443     3899987  999999999999999999999998764         223344444444444333      


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                         +++++++++.+|......         .+...|+.+|+.+|++.+.
T Consensus       260 ---sgadl~~l~~eA~~~a~~---------~~~~~i~~~~l~~a~~~~~  296 (495)
T TIGR01241       260 ---SGADLANLLNEAALLAAR---------KNKTEITMNDIEEAIDRVI  296 (495)
T ss_pred             ---CHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHHh
Confidence               467788888776332111         1123689999999988653

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.2e-27  Score=209.74  Aligned_cols=233  Identities=23%  Similarity=0.285  Sum_probs=188.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|+.+.|......++++   .+.++..++++++.++..+|.+++||||||||||.+||+++..++.       +|+.+..
T Consensus       130 s~~~~ggl~~qirelre---~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-------nfl~v~s  199 (388)
T KOG0651|consen  130 SFENVGGLFYQIRELRE---VIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-------NFLKVVS  199 (388)
T ss_pred             CHHHhCChHHHHHHHHh---heEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-------ceEEeeH
Confidence            56778887766666655   6788889999999999999999999999999999999999999887       9999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC----CcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG----GKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~----~~~~~i~a~~  316 (445)
                      +.++++|.|+++..+++.|..|   .+||||+||||++..++.+..+...++++..|..+   |++    +++-+|+||+
T Consensus       200 s~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN  279 (388)
T KOG0651|consen  200 SALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN  279 (388)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC
Confidence            9999999999999999999887   46999999999999988666666666676665554   444    7899999988


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ..++.     +|+|+|  |+|+.+..|.|+...+.+|++.+-...         .....++.+++.++...+        
T Consensus       280 rpdtL-----dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i---------~~~Geid~eaivK~~d~f--------  337 (388)
T KOG0651|consen  280 RPDTL-----DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI---------DFHGEIDDEAILKLVDGF--------  337 (388)
T ss_pred             Ccccc-----chhhcCCccccceeccCCcchhhceeeEeeccccc---------cccccccHHHHHHHHhcc--------
Confidence            87775     899998  999999999999999999887665543         334466778888776544        


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                       |+.++++...++         ...+..++...+..||+..++.+..
T Consensus       338 -~gad~rn~~tEa---------g~Fa~~~~~~~vl~Ed~~k~vrk~~  374 (388)
T KOG0651|consen  338 -NGADLRNVCTEA---------GMFAIPEERDEVLHEDFMKLVRKQA  374 (388)
T ss_pred             -ChHHHhhhcccc---------cccccchhhHHHhHHHHHHHHHHHH
Confidence             566777777665         2233456667788889888876643

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2e-27  Score=224.25  Aligned_cols=246  Identities=20%  Similarity=0.252  Sum_probs=197.1

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      |.|.+.-...+.+.  ..-.+.+.++.-.+++..+-.++|||||||||||.+||-|.+.++...     | --++...+.
T Consensus       223 IGGLd~EFs~IFRR--AFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-----P-KIVNGPeIL  294 (744)
T KOG0741|consen  223 IGGLDKEFSDIFRR--AFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-----P-KIVNGPEIL  294 (744)
T ss_pred             cccchHHHHHHHHH--HHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-----C-cccCcHHHH
Confidence            66777555544432  111122234444556777888999999999999999999999997632     2 126788899


Q ss_pred             ccccCCchhHHHHHHHHccC-----------cEEEEcCccccccCCCCC--CchhHHHHHHHHHhhccC----CcEEEEE
Q 013316          251 GEFVGHTGPKTRRRIKEAEG-----------GILFVDEAYRLIPMQKAD--DKDYGIEALEEIMSVMDG----GKVVVIF  313 (445)
Q Consensus       251 ~~~~g~~~~~~~~~~~~a~~-----------~il~lDEid~l~~~~~~~--~~~~~~~~~~~ll~~~~~----~~~~~i~  313 (445)
                      ++|+|+++.+++++|..|+.           .||++||||+++.+|++.  ++..+..++++||.-||+    ..+.||+
T Consensus       295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIG  374 (744)
T KOG0741|consen  295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIG  374 (744)
T ss_pred             HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEe
Confidence            99999999999999988731           699999999999988853  467788999999999997    7899999


Q ss_pred             ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      -|++.++.     |.+|+|  ||..++++..||..-|.+|++.+.+++.+.     -.++++++.+.++.+.+.++    
T Consensus       375 MTNR~DlI-----DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~-----~~l~~dVdl~elA~lTKNfS----  440 (744)
T KOG0741|consen  375 MTNRKDLI-----DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN-----NKLSADVDLKELAALTKNFS----  440 (744)
T ss_pred             ccCchhhH-----HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhc-----CCCCCCcCHHHHHHHhcCCc----
Confidence            99988776     889998  999999999999999999999998887532     26788999999999998887    


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCC------CChhhhhhccHHHHHHHHHHHHhc
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDC------LDTDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                           ++++..++..|.+.+..|.....      ....+...|+.+||..|+.+++|.
T Consensus       441 -----GAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA  493 (744)
T KOG0741|consen  441 -----GAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA  493 (744)
T ss_pred             -----hhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence                 88999999999887766653222      234667899999999999988773

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.6e-27  Score=191.74  Aligned_cols=143  Identities=29%  Similarity=0.375  Sum_probs=129.3

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.|||||||..|+.+++..|+...+..+|..|+ .||||||+||..|+.++|+.|+..   .|+|+|..+..|.||||+
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-aGWtPlhia~s~g~~evVk~Ll~r---~~advna~tn~G~T~LHy  112 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-AGWTPLHIAASNGNDEVVKELLNR---SGADVNATTNGGQTCLHY  112 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-cCCchhhhhhhcCcHHHHHHHhcC---CCCCcceecCCCcceehh
Confidence            6889999999999999999888877888899987 799999999999999999999986   488999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      |+..|..+++.+|+++|+.++++|..|.||| |-|+..+..+++++|+..++..+..+..+.++...+
T Consensus       113 AagK~r~eIaqlLle~ga~i~~kD~~~qtpl-HRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  113 AAGKGRLEIAQLLLEKGALIRIKDKQGQTPL-HRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             hhcCChhhHHHHHHhcCCCCcccccccCchh-HHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence            9999999999999999999999999999999 777778889999999999988888888888887665

>CHL00176 ftsH cell division protein; Validated

Probab=99.94  E-value=3.8e-26  Score=232.11  Aligned_cols=233  Identities=24%  Similarity=0.347  Sum_probs=177.5

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++++|.+++++++.+.+..++.+..    +..++...+.++||+||||||||++|+++|.+++.       +|+.+
T Consensus       179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~----~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~i  247 (638)
T CHL00176        179 GITFRDIAGIEEAKEEFEEVVSFLKKPER----FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSI  247 (638)
T ss_pred             CCCHHhccChHHHHHHHHHHHHHHhCHHH----HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------Ceeec
Confidence            35788999999999999998766554433    33455677889999999999999999999998866       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a  314 (445)
                      +++.+...+.|.....++.+|..+.   ++||||||||.+...++.+   .++.....++.|+..|++    ..+++|++
T Consensus       248 s~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa  327 (638)
T CHL00176        248 SGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA  327 (638)
T ss_pred             cHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence            9999988899988888899998874   5899999999998776532   234455778888888864    46788888


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |+.....     ||++++  ||+..|.|+.|+.++|.+|++.++++.         .+.++.+   +. .++..+.    
T Consensus       328 TN~~~~L-----D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~---------~~~~d~~---l~-~lA~~t~----  385 (638)
T CHL00176        328 TNRVDIL-----DAALLRPGRFDRQITVSLPDREGRLDILKVHARNK---------KLSPDVS---LE-LIARRTP----  385 (638)
T ss_pred             cCchHhh-----hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc---------ccchhHH---HH-HHHhcCC----
Confidence            7665432     788887  999999999999999999999998863         2223322   22 3333331    


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                       ..+++++++++.+|......         .+...|+.+||.+|+..+
T Consensus       386 -G~sgaDL~~lvneAal~a~r---------~~~~~It~~dl~~Ai~rv  423 (638)
T CHL00176        386 -GFSGADLANLLNEAAILTAR---------RKKATITMKEIDTAIDRV  423 (638)
T ss_pred             -CCCHHHHHHHHHHHHHHHHH---------hCCCCcCHHHHHHHHHHH
Confidence             24789999999987433221         122368999999998765

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.94  E-value=3.6e-26  Score=221.68  Aligned_cols=233  Identities=23%  Similarity=0.320  Sum_probs=174.6

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+++++|.++.++++.+.+.   ++..+++.+...+..+|.+++|+||||||||++|+++|..+..       +|+.+.
T Consensus       119 ~~~~di~Gl~~~~~~l~~~i~---~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-------~~~~v~  188 (364)
T TIGR01242       119 VSYEDIGGLEEQIREIREAVE---LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV  188 (364)
T ss_pred             CCHHHhCChHHHHHHHHHHHH---HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-------CEEecc
Confidence            356789999999999988543   4444555555566778899999999999999999999998876       788899


Q ss_pred             cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhH---HHHHHHHHhhccC----CcEEEEEec
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYG---IEALEEIMSVMDG----GKVVVIFAG  315 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~---~~~~~~ll~~~~~----~~~~~i~a~  315 (445)
                      ++.+...|+|++...++.+|+.+   .++||||||+|.+..++.+......   ...+..++..++.    +.+.+|++|
T Consensus       189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~tt  268 (364)
T TIGR01242       189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAAT  268 (364)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence            88898899999888888888766   3589999999999877654322222   2344555555542    568888887


Q ss_pred             CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      +....     .+|++++  ||+..|+|+.|+.+++.+|++.++.+.         .+.++++.+.++..+.++       
T Consensus       269 n~~~~-----ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~---------~l~~~~~~~~la~~t~g~-------  327 (364)
T TIGR01242       269 NRPDI-----LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM---------KLAEDVDLEAIAKMTEGA-------  327 (364)
T ss_pred             CChhh-----CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC---------CCCccCCHHHHHHHcCCC-------
Confidence            75532     3888886  999999999999999999999888664         334456666666555444       


Q ss_pred             ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                        +++++++++..|...+..         .+...|+.+||.+|+..+
T Consensus       328 --sg~dl~~l~~~A~~~a~~---------~~~~~i~~~d~~~a~~~~  363 (364)
T TIGR01242       328 --SGADLKAICTEAGMFAIR---------EERDYVTMDDFIKAVEKV  363 (364)
T ss_pred             --CHHHHHHHHHHHHHHHHH---------hCCCccCHHHHHHHHHHh
Confidence              467778888777433211         123479999999999875

Many proteins may score above the trusted cutoff because an internal

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.9e-26  Score=218.42  Aligned_cols=246  Identities=22%  Similarity=0.289  Sum_probs=191.7

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|+++.|.+.+++.+.+   .+.++.-|+..+..+. .++.++|++||||||||+++++||.++..       .|+.+
T Consensus       149 ~v~~~di~gl~~~k~~l~e---~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~a-------tff~i  217 (428)
T KOG0740|consen  149 NVGWDDIAGLEDAKQSLKE---AVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGA-------TFFNI  217 (428)
T ss_pred             cccccCCcchhhHHHHhhh---hhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcc-------eEeec
Confidence            4578899999999999998   5666666777766654 46779999999999999999999999988       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEec
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAG  315 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~  315 (445)
                      ++++|.++|+|++++.++.+|.-|   +++|+||||||+++.+|....++...+...+++-.++.      .++++|+||
T Consensus       218 SassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT  297 (428)
T KOG0740|consen  218 SASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT  297 (428)
T ss_pred             cHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence            999999999999999999999776   57999999999999999777788888888887766653      467888886


Q ss_pred             CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      +.....     |.++++||..++++|.|+.+.+..++.+.|.+...       .+ .+.+.+.++.+..+++++      
T Consensus       298 N~P~e~-----Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~-------~l-~~~d~~~l~~~Tegysgs------  358 (428)
T KOG0740|consen  298 NRPWEL-----DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPN-------GL-SDLDISLLAKVTEGYSGS------  358 (428)
T ss_pred             CCchHH-----HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCC-------Cc-cHHHHHHHHHHhcCcccc------
Confidence            654433     88999999999999999999999999999998632       21 233455666677666644      


Q ss_pred             CchhhHHHHHHHHHh----hhhhhccCCCChhhhhhccHHHHHHHHHHHHhc
Q 013316          396 NGGLVDPMLVNAREN----LDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       396 n~r~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                         ++.+++..|..-    ............+..+.++..|+..+++.+.+.
T Consensus       359 ---di~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~  407 (428)
T KOG0740|consen  359 ---DITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS  407 (428)
T ss_pred             ---cHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence               444444444211    111001223456677899999999999988765

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.93  E-value=3.3e-26  Score=219.36  Aligned_cols=204  Identities=19%  Similarity=0.235  Sum_probs=166.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      -.|++|+|.++.+.++.+.++..              +..+.+||+.|++||||..+|++||+.+.+    ..+||+.+|
T Consensus       242 y~f~~Iig~S~~m~~~~~~akr~--------------A~tdstVLi~GESGTGKElfA~~IH~~S~R----~~~PFIaiN  303 (560)
T COG3829         242 YTFDDIIGESPAMLRVLELAKRI--------------AKTDSTVLILGESGTGKELFARAIHNLSPR----ANGPFIAIN  303 (560)
T ss_pred             cchhhhccCCHHHHHHHHHHHhh--------------cCCCCcEEEecCCCccHHHHHHHHHhcCcc----cCCCeEEEe
Confidence            46889999999999988877654              678899999999999999999999999988    455999999


Q ss_pred             ccc-----ccccccCCchhHH--------HHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----
Q 013316          246 RTD-----LVGEFVGHTGPKT--------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----  307 (445)
Q Consensus       246 ~~~-----l~~~~~g~~~~~~--------~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----  307 (445)
                      |+.     +.+++||+.....        ...|+.|.+|+||||||           ++++...|.+||+.++++     
T Consensus       304 CaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEI-----------gempl~LQaKLLRVLQEkei~rv  372 (560)
T COG3829         304 CAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEI-----------GEMPLPLQAKLLRVLQEKEIERV  372 (560)
T ss_pred             cccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhh-----------ccCCHHHHHHHHHHHhhceEEec
Confidence            998     5678898833322        34889999999999999           677779999999999863     


Q ss_pred             --------cEEEEEecCchhHHHHHhh--Ccccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcc
Q 013316          308 --------KVVVIFAGYSEPMKRVIAS--NEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSC  374 (445)
Q Consensus       308 --------~~~~i~a~~~~~~~~~~~~--~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~  374 (445)
                              ++.+|+||+.+....+.+.  ...|..|+. ..|.+|++.  ++|+..+.++|+.+.+.+++.    ....+
T Consensus       373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~----~v~~l  448 (560)
T COG3829         373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGR----NVKGL  448 (560)
T ss_pred             CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCC----CcccC
Confidence                    4688889888877655321  234455775 445777776  799999999999998777663    24567


Q ss_pred             cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      +++++..+.++.|      |||.|+|+|++|+++
T Consensus       449 s~~a~~~L~~y~W------PGNVRELeNviER~v  476 (560)
T COG3829         449 SPDALALLLRYDW------PGNVRELENVIERAV  476 (560)
T ss_pred             CHHHHHHHHhCCC------CchHHHHHHHHHHHH
Confidence            8889999999988      999999999999995

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.3e-26  Score=185.10  Aligned_cols=144  Identities=26%  Similarity=0.333  Sum_probs=129.0

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      -+..++..+ .||||||.||..|+.++|+.|+.+.+.++|..+. .|.||||||+..|..+|+++|++.    |+.++++
T Consensus        61 ~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn-~G~T~LHyAagK~r~eIaqlLle~----ga~i~~k  135 (226)
T KOG4412|consen   61 PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN-GGQTCLHYAAGKGRLEIAQLLLEK----GALIRIK  135 (226)
T ss_pred             CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC-CCcceehhhhcCChhhHHHHHHhc----CCCCccc
Confidence            344555544 6999999999999999999999888999999998 899999999999999999999995    8999999


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE  152 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~  152 (445)
                      |.+|+||||-|+..|+.+++++|+..|+.+|..|+.|+||||| |.-.++.+...+|.+++++....+..+
T Consensus       136 D~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~-al~e~~~d~a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  136 DKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHH-ALAEGHPDVAVLLVRAGADTDREDKEG  205 (226)
T ss_pred             ccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHH-HHhccCchHHHHHHHhccceeeccccC
Confidence            9999999999999999999999999999999999999999955 445568899999999998877666544

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.93  E-value=4.8e-25  Score=203.48  Aligned_cols=184  Identities=22%  Similarity=0.315  Sum_probs=142.7

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++||++....-.-+.+.+             ......+|+|||||||||||+|+.||+..+.       .|..+++
T Consensus        22 ~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-------~f~~~sA   81 (436)
T COG2256          22 SLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNA-------AFEALSA   81 (436)
T ss_pred             CHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCC-------ceEEecc
Confidence            4677888887753322111111             2567789999999999999999999999887       8888887


Q ss_pred             ccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchh
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP  319 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~  319 (445)
                      ..-       +-+.+++++++|       +..||||||||++...+           |+.||..|+++.+++|+|||.++
T Consensus        82 v~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-----------QD~lLp~vE~G~iilIGATTENP  143 (436)
T COG2256          82 VTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-----------QDALLPHVENGTIILIGATTENP  143 (436)
T ss_pred             ccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-----------hhhhhhhhcCCeEEEEeccCCCC
Confidence            543       567888899887       24899999999998744           57899999999999999999998


Q ss_pred             HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      .-.+   +|+|++|+ +++.|.+++.+|+.+++++.+......++..    ...++++++. .+...+.||.|...|.
T Consensus       144 sF~l---n~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~----~~~i~~~a~~-~l~~~s~GD~R~aLN~  212 (436)
T COG2256         144 SFEL---NPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQ----IIVLDEEALD-YLVRLSNGDARRALNL  212 (436)
T ss_pred             Ceee---cHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcc----cccCCHHHHH-HHHHhcCchHHHHHHH
Confidence            8765   99999998 9999999999999999999666554444422    2345566655 6667787777777664

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.6e-25  Score=226.73  Aligned_cols=251  Identities=22%  Similarity=0.237  Sum_probs=194.4

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|+++.|.+.++.++++   .+.+|+-+++.+......+|.++||+||||||||++||++|..+....  ....|+.-
T Consensus       261 ~v~fd~vggl~~~i~~LKE---mVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~--~kisffmr  335 (1080)
T KOG0732|consen  261 SVGFDSVGGLENYINQLKE---MVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN--RKISFFMR  335 (1080)
T ss_pred             ccCccccccHHHHHHHHHH---HHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc--cccchhhh
Confidence            4568899999999999999   578888999999999999999999999999999999999999875422  23367778


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS  317 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~  317 (445)
                      ..++..++|+|+.+..++-+|++|+   ++|+|+||||.|+|.|++-.......+...||.+|++    +++++|+||++
T Consensus       336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR  415 (1080)
T KOG0732|consen  336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR  415 (1080)
T ss_pred             cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence            8889999999999999999999985   5999999999999998765556666888899999986    88999999887


Q ss_pred             hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      .+..     ||+||+  |||+.++||.|+.+++.+|+..+-.+..        ........+.+++...++.        
T Consensus       416 pda~-----dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~--------~~i~~~l~~~la~~t~gy~--------  474 (1080)
T KOG0732|consen  416 PDAI-----DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE--------PPISRELLLWLAEETSGYG--------  474 (1080)
T ss_pred             cccc-----chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC--------CCCCHHHHHHHHHhccccc--------
Confidence            7665     999988  9999999999999999999998887753        1122223334444444443        


Q ss_pred             CchhhHHHHHHHHHhhhhhh---cc----CCCChhhhhhccHHHHHHHHHHHHh
Q 013316          396 NGGLVDPMLVNARENLDLRL---SF----DCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       396 n~r~l~~~~~~~~~~~~~~~---~~----~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                       +++++.+...|.-....+-   .+    ..........|...||..|+.++.|
T Consensus       475 -gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p  527 (1080)
T KOG0732|consen  475 -GADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP  527 (1080)
T ss_pred             -hHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence             4556777766532222211   00    0112333456899999999887654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.92  E-value=1.8e-24  Score=199.86  Aligned_cols=145  Identities=18%  Similarity=0.261  Sum_probs=121.0

Q ss_pred             CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHcc--------CcE
Q 013316          201 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE--------GGI  272 (445)
Q Consensus       201 ~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~--------~~i  272 (445)
                      .+.++|..++|+||||||||++|+++|++++.       +|+.++.+++.++|+|++++.++++|+.|.        +||
T Consensus       143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~-------~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV  215 (413)
T PLN00020        143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGI-------EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC  215 (413)
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence            44678999999999999999999999999887       899999999999999999999999998773        699


Q ss_pred             EEEcCccccccCCCCCCchhHHHHH-HHHHhhccC----------------CcEEEEEecCchhHHHHHhhCccccc--c
Q 013316          273 LFVDEAYRLIPMQKADDKDYGIEAL-EEIMSVMDG----------------GKVVVIFAGYSEPMKRVIASNEGFCR--R  333 (445)
Q Consensus       273 l~lDEid~l~~~~~~~~~~~~~~~~-~~ll~~~~~----------------~~~~~i~a~~~~~~~~~~~~~~~l~~--R  333 (445)
                      |||||||++++++++.+.....+++ .+|+..||+                .+++||++||.....     +|+|+|  |
T Consensus       216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~L-----DpALlRpGR  290 (413)
T PLN00020        216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTL-----YAPLIRDGR  290 (413)
T ss_pred             EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccC-----CHhHcCCCC
Confidence            9999999999988755445544554 678877652                446777776554433     999999  9


Q ss_pred             cccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          334 VTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       334 ~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      ||+.+  ..|+.++|.+|++.++++.
T Consensus       291 fDk~i--~lPd~e~R~eIL~~~~r~~  314 (413)
T PLN00020        291 MEKFY--WAPTREDRIGVVHGIFRDD  314 (413)
T ss_pred             CCcee--CCCCHHHHHHHHHHHhccC
Confidence            99865  5899999999999988864

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.9e-24  Score=210.44  Aligned_cols=197  Identities=24%  Similarity=0.345  Sum_probs=163.9

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      ++.|.......+++   .+.++++.+..+...+..+|.++|+|||||||||.+++++|++.+.       .++.++++.+
T Consensus       185 ~~gg~~~~~~~i~e---~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a-------~~~~i~~pel  254 (693)
T KOG0730|consen  185 DIGGLKRQLSVIRE---LVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA-------FLFLINGPEL  254 (693)
T ss_pred             ccchhHHHHHHHHH---HHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc-------eeEecccHHH
Confidence            46666666666666   5677888888888899999999999999999999999999999887       8999999999


Q ss_pred             cccccCCchhHHHHHHHHc---c-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCchhHH
Q 013316          250 VGEFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMK  321 (445)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~a---~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~~~~  321 (445)
                      ++++.|+++++++++|+++   + ++++||||+|.++|+|..... ...++..+|+.+|+.    ++++|+.++++....
T Consensus       255 i~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl  333 (693)
T KOG0730|consen  255 ISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL  333 (693)
T ss_pred             HHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence            9999999999999999988   3 689999999999998875444 567888889888875    668888886665443


Q ss_pred             HHHhhCccccc-ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          322 RVIASNEGFCR-RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       322 ~~~~~~~~l~~-R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                           ||++|| |||..+.+..|+..++.+|++.+.+++.         +..+.+.+.++..+.++.++|.
T Consensus       334 -----d~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~---------~~~~~~l~~iA~~thGyvGaDL  390 (693)
T KOG0730|consen  334 -----DPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMN---------LLSDVDLEDIAVSTHGYVGADL  390 (693)
T ss_pred             -----ChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcC---------CcchhhHHHHHHHccchhHHHH
Confidence                 999998 9999999999999999999999998863         3344566666666666664443

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-24  Score=205.96  Aligned_cols=204  Identities=22%  Similarity=0.229  Sum_probs=163.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      ....|||+++++.++.+.+..+              +....+||+.|++||||..+||+||+.+.+.    ..||+.+||
T Consensus       221 ~~~~iIG~S~am~~ll~~i~~V--------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~----~kPfV~~NC  282 (550)
T COG3604         221 EVGGIIGRSPAMRQLLKEIEVV--------------AKSDSTVLIRGETGTGKELVARAIHQLSPRR----DKPFVKLNC  282 (550)
T ss_pred             ccccceecCHHHHHHHHHHHHH--------------hcCCCeEEEecCCCccHHHHHHHHHhhCccc----CCCceeeec
Confidence            4556999999999999877755              6788899999999999999999999999874    449999999


Q ss_pred             cc-----ccccccCCchhHHH-------HHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316          247 TD-----LVGEFVGHTGPKTR-------RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  307 (445)
Q Consensus       247 ~~-----l~~~~~g~~~~~~~-------~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  307 (445)
                      +.     +.+++|||....++       ..|+.|.||+||||||           ++++...|.+||+.++++       
T Consensus       283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEI-----------GelPL~lQaKLLRvLQegEieRvG~  351 (550)
T COG3604         283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEI-----------GELPLALQAKLLRVLQEGEIERVGG  351 (550)
T ss_pred             cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhh-----------ccCCHHHHHHHHHHHhhcceeecCC
Confidence            98     56779999443333       3678889999999999           666669999999999864       


Q ss_pred             ------cEEEEEecCchhHHHHHhh--Ccccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316          308 ------KVVVIFAGYSEPMKRVIAS--NEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  376 (445)
Q Consensus       308 ------~~~~i~a~~~~~~~~~~~~--~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~  376 (445)
                            ++.+|+|||.+....+.+.  ...|..|+. .-|.+||+.  ++|+..+..+|+.+...+.+..    ...+++
T Consensus       352 ~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~----~l~ls~  427 (550)
T COG3604         352 DRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA----ILSLSA  427 (550)
T ss_pred             CceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc----ccccCH
Confidence                  3688888888766544311  133445775 446777776  7999999999999988776643    446677


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      +++..++.+.|      |||+|+|++++++|.-
T Consensus       428 ~Al~~L~~y~w------PGNVRELen~veRavl  454 (550)
T COG3604         428 EALELLSSYEW------PGNVRELENVVERAVL  454 (550)
T ss_pred             HHHHHHHcCCC------CCcHHHHHHHHHHHHH
Confidence            89999998887      9999999999999954

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.91  E-value=6.5e-24  Score=223.28  Aligned_cols=246  Identities=21%  Similarity=0.319  Sum_probs=184.0

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++|+|.+.+++.+++++.   ++..+++.+...+..++.++||+||||||||++|+++|+.++.       +|+.+
T Consensus       174 ~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~-------~~i~i  243 (733)
T TIGR01243       174 KVTYEDIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA-------YFISI  243 (733)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEEE
Confidence            3468889999999999998654   4455566655666778899999999999999999999999876       89999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS  317 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~  317 (445)
                      +++.+.+.+.|+++..++.+|+.+.   ++||||||||.+.++++...++...++++.|+..|+.    +.+++|++|+.
T Consensus       244 ~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~  323 (733)
T TIGR01243       244 NGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNR  323 (733)
T ss_pred             ecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCC
Confidence            9999999999999999999998763   4899999999999988765566677888999988864    56778877665


Q ss_pred             hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ...     .||++++  ||+..+.|+.|+.+++.+|++.+.+..         .+..+.+.+.++.....+.        
T Consensus       324 ~~~-----ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~---------~l~~d~~l~~la~~t~G~~--------  381 (733)
T TIGR01243       324 PDA-----LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM---------PLAEDVDLDKLAEVTHGFV--------  381 (733)
T ss_pred             hhh-----cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC---------CCccccCHHHHHHhCCCCC--------
Confidence            432     3899887  999999999999999999999776653         3344555556665554444        


Q ss_pred             CchhhHHHHHHHHHhhhhhhcc-CC-------C--ChhhhhhccHHHHHHHHHHHHhc
Q 013316          396 NGGLVDPMLVNARENLDLRLSF-DC-------L--DTDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       396 n~r~l~~~~~~~~~~~~~~~~~-~~-------~--~~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                       ++++..++..+......+... ..       .  .......++.+|+..+++.+.|.
T Consensus       382 -gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps  438 (733)
T TIGR01243       382 -GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS  438 (733)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence             344455555443333222211 00       0  01133468899999999877664

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.91  E-value=5.9e-24  Score=184.24  Aligned_cols=183  Identities=24%  Similarity=0.312  Sum_probs=124.1

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++||++++..+.-+++..+.           ......|++||||||+||||+|+.||++++.       +|...+.
T Consensus        22 ~L~efiGQ~~l~~~l~i~i~aa~~-----------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------~~~~~sg   83 (233)
T PF05496_consen   22 SLDEFIGQEHLKGNLKILIRAAKK-----------RGEALDHMLFYGPPGLGKTTLARIIANELGV-------NFKITSG   83 (233)
T ss_dssp             SCCCS-S-HHHHHHHHHHHHHHHC-----------TTS---EEEEESSTTSSHHHHHHHHHHHCT---------EEEEEC
T ss_pred             CHHHccCcHHHHhhhHHHHHHHHh-----------cCCCcceEEEECCCccchhHHHHHHHhccCC-------CeEeccc
Confidence            577899999999998876665431           1345679999999999999999999999887       7777776


Q ss_pred             ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----------------
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-----------------  308 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------  308 (445)
                      +.+.      ....+..++... ++.||||||||++.+           ..++.|+..|+++.                 
T Consensus        84 ~~i~------k~~dl~~il~~l~~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~  146 (233)
T PF05496_consen   84 PAIE------KAGDLAAILTNLKEGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRIN  146 (233)
T ss_dssp             CC--------SCHHHHHHHHT--TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred             hhhh------hHHHHHHHHHhcCCCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeecc
Confidence            5442      234455555443 568999999999987           67788999999754                 


Q ss_pred             ---EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316          309 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  385 (445)
Q Consensus       309 ---~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (445)
                         +.+|+|||.....     .++|++||....++..|+.+|+.+|++......           ..+++.++.. .++.
T Consensus       147 l~~FTligATTr~g~l-----s~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-----------~i~i~~~~~~-~Ia~  209 (233)
T PF05496_consen  147 LPPFTLIGATTRAGLL-----SSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-----------NIEIDEDAAE-EIAR  209 (233)
T ss_dssp             ----EEEEEESSGCCT-----SHCCCTTSSEEEE----THHHHHHHHHHCCHCT-----------T-EE-HHHHH-HHHH
T ss_pred             CCCceEeeeecccccc-----chhHHhhcceecchhcCCHHHHHHHHHHHHHHh-----------CCCcCHHHHH-HHHH
Confidence               4667777665443     688999998888999999999999998765543           3345555544 5666


Q ss_pred             HHHHhhhcccCchhhHHHHHHH
Q 013316          386 ETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       386 ~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      .+      -|..|.+.+++.++
T Consensus       210 rs------rGtPRiAnrll~rv  225 (233)
T PF05496_consen  210 RS------RGTPRIANRLLRRV  225 (233)
T ss_dssp             CT------TTSHHHHHHHHHHH
T ss_pred             hc------CCChHHHHHHHHHH
Confidence            66      56677778888877

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.91  E-value=1.2e-23  Score=216.56  Aligned_cols=235  Identities=20%  Similarity=0.292  Sum_probs=179.8

Q ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316          163 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  242 (445)
Q Consensus       163 ~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~  242 (445)
                      .....|.++.|.+..++++.+.+.....+.....    .+...+.+++|+||||||||++|++++..++.       +|+
T Consensus       146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~----~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-------~f~  214 (644)
T PRK10733        146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQK----LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFF  214 (644)
T ss_pred             hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHh----cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------CEE
Confidence            4556788999999999999987766544433332    33456778999999999999999999998876       999


Q ss_pred             EeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEE
Q 013316          243 EVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVI  312 (445)
Q Consensus       243 ~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i  312 (445)
                      .++++++...++|.+...++.+|..+   .++||||||||.+..+++.+   +.......++.|+..|++    ..+++|
T Consensus       215 ~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI  294 (644)
T PRK10733        215 TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI  294 (644)
T ss_pred             EEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence            99999999999999999999999876   45899999999999877642   234455788899888874    457788


Q ss_pred             EecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHh
Q 013316          313 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK  390 (445)
Q Consensus       313 ~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  390 (445)
                      ++|+.....     ||++++  |||+.|.|+.|+.+++.+|++.++.+.         .+.++++...++..+.+     
T Consensus       295 aaTN~p~~l-----D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~---------~l~~~~d~~~la~~t~G-----  355 (644)
T PRK10733        295 AATNRPDVL-----DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAAIIARGTPG-----  355 (644)
T ss_pred             EecCChhhc-----CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC---------CCCCcCCHHHHHhhCCC-----
Confidence            887755433     899987  999999999999999999999999874         34455555555444333     


Q ss_pred             hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          391 QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       391 ~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                          .+++++.+++.+|......         .+...|+.+|+.+|+..+
T Consensus       356 ----~sgadl~~l~~eAa~~a~r---------~~~~~i~~~d~~~a~~~v  392 (644)
T PRK10733        356 ----FSGADLANLVNEAALFAAR---------GNKRVVSMVEFEKAKDKI  392 (644)
T ss_pred             ----CCHHHHHHHHHHHHHHHHH---------cCCCcccHHHHHHHHHHH
Confidence                3578888888887443221         123468888888887655

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-22  Score=191.81  Aligned_cols=207  Identities=22%  Similarity=0.284  Sum_probs=164.8

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+.+++|.+...+++++.++..              +....+||++|++||||+.+|+.||..+.+.   ..+||+.+|
T Consensus        75 ~~~~~LIG~~~~~~~~~eqik~~--------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~---~~~PFI~~N  137 (403)
T COG1221          75 EALDDLIGESPSLQELREQIKAY--------------APSGLPVLIIGETGTGKELFARLIHALSARR---AEAPFIAFN  137 (403)
T ss_pred             hhhhhhhccCHHHHHHHHHHHhh--------------CCCCCcEEEecCCCccHHHHHHHHHHhhhcc---cCCCEEEEE
Confidence            35677999999999988877653              4567799999999999999999999666552   466999999


Q ss_pred             ccccc-----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------
Q 013316          246 RTDLV-----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------  307 (445)
Q Consensus       246 ~~~l~-----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------  307 (445)
                      |+.+.     .++||+..       ..-..+|+.|.||+||||||+.+.+           +.|..|++.+|++      
T Consensus       138 Ca~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG  206 (403)
T COG1221         138 CAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVG  206 (403)
T ss_pred             HHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH-----------hHHHHHHHHHHcCceEecC
Confidence            99854     34677522       2234589999999999999987776           8889999999873      


Q ss_pred             -------cEEEEEecCchhHHHHHhhCccccc-ccccceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316          308 -------KVVVIFAGYSEPMKRVIASNEGFCR-RVTKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  377 (445)
Q Consensus       308 -------~~~~i~a~~~~~~~~~~~~~~~l~~-R~~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  377 (445)
                             ++.+|+||+.+.-..++.. ..|.+ |+...|.+|++.  ..|+..++++|++.+..+++.   .+.. .+++
T Consensus       207 ~~~~~~~dVRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~---~~~~-~~~~  281 (403)
T COG1221         207 GSQPRPVDVRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGL---PLSV-DSPE  281 (403)
T ss_pred             CCCCcCCCceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCC---CCCC-CCHH
Confidence                   4689999988877766553 45666 677889999998  789999999999998776553   3322 2368


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316          378 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL  411 (445)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~  411 (445)
                      ++..+..+.|      |||.|+|+|+|++++-..
T Consensus       282 a~~~L~~y~~------pGNirELkN~Ve~~~~~~  309 (403)
T COG1221         282 ALRALLAYDW------PGNIRELKNLVERAVAQA  309 (403)
T ss_pred             HHHHHHhCCC------CCcHHHHHHHHHHHHHHh
Confidence            8999999988      999999999999997655

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.88  E-value=1.7e-21  Score=171.89  Aligned_cols=188  Identities=21%  Similarity=0.259  Sum_probs=140.0

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      +.|++.+||..+|+++.=++...+..           ....-|+|||||||.||||+|..||.+++..-.+.++|.++  
T Consensus        23 ~~l~efiGQ~~vk~~L~ifI~AAk~r-----------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le--   89 (332)
T COG2255          23 KTLDEFIGQEKVKEQLQIFIKAAKKR-----------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE--   89 (332)
T ss_pred             ccHHHhcChHHHHHHHHHHHHHHHhc-----------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence            46788999999999999887766532           55677999999999999999999999998733333444332  


Q ss_pred             cccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------  307 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------  307 (445)
                                 -+..+..++..- ++-||||||||++.+           .+-+.|...|++.                 
T Consensus        90 -----------K~gDlaaiLt~Le~~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~l  147 (332)
T COG2255          90 -----------KPGDLAAILTNLEEGDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRL  147 (332)
T ss_pred             -----------ChhhHHHHHhcCCcCCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEec
Confidence                       233444555444 568999999999997           5556688888862                 


Q ss_pred             ---cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH
Q 013316          308 ---KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  384 (445)
Q Consensus       308 ---~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (445)
                         .+.+|+|||.....     ..+|++||....++..|+.+|+.+|+......+           ..+++.++.. .++
T Consensus       148 dLppFTLIGATTr~G~l-----t~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-----------~i~i~~~~a~-eIA  210 (332)
T COG2255         148 DLPPFTLIGATTRAGML-----TNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-----------GIEIDEEAAL-EIA  210 (332)
T ss_pred             cCCCeeEeeeccccccc-----cchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-----------CCCCChHHHH-HHH
Confidence               36889998877665     567999999999999999999999999876543           3456666655 555


Q ss_pred             HHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316          385 KETTEKQRREMNGGLVDPMLVNARENL  411 (445)
Q Consensus       385 ~~~~~~~~~~~n~r~l~~~~~~~~~~~  411 (445)
                      +.+      -|-.|...+++.+.+..+
T Consensus       211 ~rS------RGTPRIAnRLLrRVRDfa  231 (332)
T COG2255         211 RRS------RGTPRIANRLLRRVRDFA  231 (332)
T ss_pred             Hhc------cCCcHHHHHHHHHHHHHH
Confidence            665      445566666666664443

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.88  E-value=2.5e-22  Score=182.22  Aligned_cols=222  Identities=21%  Similarity=0.294  Sum_probs=154.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+++.+||+.+..+ .-+++..            +.....+.|+|+||||||||++||.|+.-...+-    -.|++++
T Consensus       135 ktL~dyvGQ~hlv~q-~gllrs~------------ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelS  197 (554)
T KOG2028|consen  135 KTLDDYVGQSHLVGQ-DGLLRSL------------IEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELS  197 (554)
T ss_pred             chHHHhcchhhhcCc-chHHHHH------------HHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEe
Confidence            356667777766544 1111111            1145667899999999999999999998776522    2577777


Q ss_pred             cccccccccCCchhHHHHHHHHcc--------CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a~--------~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      +..-       ....++++|++++        ..||||||||++...+           |+.||..++.|.|++|+||+.
T Consensus       198 At~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ-----------QD~fLP~VE~G~I~lIGATTE  259 (554)
T KOG2028|consen  198 ATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ-----------QDTFLPHVENGDITLIGATTE  259 (554)
T ss_pred             cccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh-----------hhcccceeccCceEEEecccC
Confidence            6554       4567888998874        3899999999998744           578999999999999999998


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCC---cccHHHHHHHHHHHHHHhhhcc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHS---SCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ++.-.+   +.+|.+|| .++.+.+++.+....|+.+.+.-...... ....++.   .++. .+.+.++..+.||.|..
T Consensus       260 NPSFql---n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser-~~~~l~n~s~~ve~-siidyla~lsdGDaR~a  333 (554)
T KOG2028|consen  260 NPSFQL---NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSER-PTDPLPNSSMFVED-SIIDYLAYLSDGDARAA  333 (554)
T ss_pred             CCccch---hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccc-cCCCCCCcchhhhH-HHHHHHHHhcCchHHHH
Confidence            887655   78899999 99999999999999999987663321111 1112211   2333 44557778888888888


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      .|+-++..-+      .-.|     ........++.+|++++++.
T Consensus       334 LN~Lems~~m------~~tr-----~g~~~~~~lSidDvke~lq~  367 (554)
T KOG2028|consen  334 LNALEMSLSM------FCTR-----SGQSSRVLLSIDDVKEGLQR  367 (554)
T ss_pred             HHHHHHHHHH------HHhh-----cCCcccceecHHHHHHHHhh
Confidence            8875544111      1111     11123457999999998874

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.88  E-value=3e-22  Score=190.06  Aligned_cols=203  Identities=17%  Similarity=0.209  Sum_probs=155.4

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      |+|.++.++.+.+.+..+              +....+|||+|++||||+++|++||..+.+    ...+|+.++|+.+.
T Consensus         1 liG~S~~m~~~~~~~~~~--------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r----~~~pfv~vnc~~~~   62 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRL--------------APLDRPVLIIGERGTGKELIAARLHYLSKR----WQGPLVKLNCAALS   62 (329)
T ss_pred             CCcCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCChHHHHHHHHHHhcCc----cCCCeEEEeCCCCC
Confidence            578898888888877655              456789999999999999999999998765    34499999998753


Q ss_pred             -----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc----------
Q 013316          251 -----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------  308 (445)
Q Consensus       251 -----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----------  308 (445)
                           +.+||+...       .....|+.+.+|+||||||+.+..           ..|..|+..++.+.          
T Consensus        63 ~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~  131 (329)
T TIGR02974        63 ENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTL  131 (329)
T ss_pred             hHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCcee
Confidence                 345665322       123468889999999999988876           78889999887643          


Q ss_pred             ---EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316          309 ---VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  380 (445)
Q Consensus       309 ---~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~  380 (445)
                         +.+|++++.+......  ...+.|..||. ..|.+|++.  .+|+..++++|+.+.....+.   .....++++++.
T Consensus       132 ~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~---~~~~~ls~~a~~  208 (329)
T TIGR02974       132 QVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGL---PLFPGFTPQARE  208 (329)
T ss_pred             ccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCC---CCCCCcCHHHHH
Confidence               5777777665433221  11366778884 678999998  799999999999886544331   111468899999


Q ss_pred             HHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316          381 ALIEKETTEKQRREMNGGLVDPMLVNARENL  411 (445)
Q Consensus       381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~  411 (445)
                      .+..+.|      |||.|+|+++++++....
T Consensus       209 ~L~~y~W------PGNvrEL~n~i~~~~~~~  233 (329)
T TIGR02974       209 QLLEYHW------PGNVRELKNVVERSVYRH  233 (329)
T ss_pred             HHHhCCC------CchHHHHHHHHHHHHHhC
Confidence            9999888      999999999999986643

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.88  E-value=1.9e-21  Score=204.05  Aligned_cols=244  Identities=17%  Similarity=0.224  Sum_probs=174.7

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~  243 (445)
                      .++.++|+++...++.+.+.                .....+++|+||||||||++|+.+|+.+....   .+....++.
T Consensus       180 ~l~~~igr~~ei~~~~~~L~----------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~  243 (731)
T TIGR02639       180 KIDPLIGREDELERTIQVLC----------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS  243 (731)
T ss_pred             CCCcccCcHHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence            45679999988776665332                33567899999999999999999999884422   233557889


Q ss_pred             eeccccc--ccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch
Q 013316          244 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  318 (445)
Q Consensus       244 ~~~~~l~--~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~  318 (445)
                      ++++.+.  .+|.|+.+..++++|+++   .++||||||||.+.+.+...+++  .++.+.|...++++.+.+|++||..
T Consensus       244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~~g~i~~IgaTt~~  321 (731)
T TIGR02639       244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALSSGKLRCIGSTTYE  321 (731)
T ss_pred             ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHhCCCeEEEEecCHH
Confidence            9988887  468999999999999875   35899999999999765432222  2466778888999999999999998


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  398 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r  398 (445)
                      .+...++.|++|+||| ..|.|+.|+.+++.+|++....++...       ....++++++.... ..+..+.....-.+
T Consensus       322 e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~-------~~v~i~~~al~~~~-~ls~ryi~~r~~P~  392 (731)
T TIGR02639       322 EYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEF-------HHVKYSDEALEAAV-ELSARYINDRFLPD  392 (731)
T ss_pred             HHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhc-------cCcccCHHHHHHHH-HhhhcccccccCCH
Confidence            8888888899999999 589999999999999999877654211       12356677776544 33322222212233


Q ss_pred             hhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          399 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       399 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                      ....+++.+......+.     .......|+.+||.+++..+.-
T Consensus       393 kai~lld~a~a~~~~~~-----~~~~~~~v~~~~i~~~i~~~tg  431 (731)
T TIGR02639       393 KAIDVIDEAGASFRLRP-----KAKKKANVSVKDIENVVAKMAH  431 (731)
T ss_pred             HHHHHHHHhhhhhhcCc-----ccccccccCHHHHHHHHHHHhC
Confidence            34555665543322211     1112346999999999987643

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.87  E-value=1.6e-22  Score=216.83  Aligned_cols=199  Identities=11%  Similarity=0.132  Sum_probs=141.9

Q ss_pred             CCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----------cCC------------
Q 013316          199 LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----------VGH------------  256 (445)
Q Consensus       199 ~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~----------~g~------------  256 (445)
                      +.++..+|.+||++||||||||.+||++|.+++.       ||+.++++++.+.+          +|+            
T Consensus      1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~V-------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206       1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYV-------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred             HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-------ceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence            4466788999999999999999999999999887       99999999988654          121            


Q ss_pred             -------------------ch--hHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------
Q 013316          257 -------------------TG--PKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------  306 (445)
Q Consensus       257 -------------------~~--~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------  306 (445)
                                         +.  ..++.+|+.|   .+|||||||||.+..+..   .   ...++.|+..|++      
T Consensus      1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds---~---~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206       1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES---N---YLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred             ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc---c---eehHHHHHHHhccccccCC
Confidence                               11  2367788877   469999999999997522   1   1235777777763      


Q ss_pred             -CcEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCc-ccHHHHHHH
Q 013316          307 -GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS-CSMDAIAAL  382 (445)
Q Consensus       307 -~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~  382 (445)
                       ..++||+||+..+..     ||||+|  |||+.|.++.|+..++.+++...+...       ++.+... ++.+.++..
T Consensus      1770 ~~~VIVIAATNRPD~L-----DPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk-------g~~L~~~~vdl~~LA~~ 1837 (2281)
T CHL00206       1770 TRNILVIASTHIPQKV-----DPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR-------GFHLEKKMFHTNGFGSI 1837 (2281)
T ss_pred             CCCEEEEEeCCCcccC-----CHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc-------CCCCCcccccHHHHHHh
Confidence             357888887765543     999998  999999999999999998887543221       1222222 345555555


Q ss_pred             HHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          383 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       383 ~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      +.++         +|+++.+++.+|......+         +...|+.+++..|+...
T Consensus      1838 T~Gf---------SGADLanLvNEAaliAirq---------~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206       1838 TMGS---------NARDLVALTNEALSISITQ---------KKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred             CCCC---------CHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHH
Confidence            4444         4788888888773322221         22368888888888764

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.87  E-value=5.7e-21  Score=180.87  Aligned_cols=166  Identities=16%  Similarity=0.215  Sum_probs=118.4

Q ss_pred             cCcEEEEcCccccccCCCCCCchhHH-HHHHHHHhhccC------------CcEEEEEecCchhHHHHHhhCcccccccc
Q 013316          269 EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGYSEPMKRVIASNEGFCRRVT  335 (445)
Q Consensus       269 ~~~il~lDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~  335 (445)
                      +.|||||||||+++.+..+.+.+.+. -+|+.||..+++            ..+.+|+++.-... .+-..-|.|..||+
T Consensus       247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~P  325 (441)
T TIGR00390       247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA-KPSDLIPELQGRFP  325 (441)
T ss_pred             cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccc
Confidence            56999999999999876444444444 488889999987            45788887752211 11112599999999


Q ss_pred             cceeCCCCCHHHHHHHH----HHHHhcccccccccccccCCcccHHHHHHHHHHHHH--HhhhcccCchhhHHHHHHHHH
Q 013316          336 KFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT--EKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       336 ~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ..+.+.+++.+++..||    ...++++..-+..+++.+  .++++++.++......  ...+..| +|-|+.++++...
T Consensus       326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L--~Ftd~Al~~IA~~A~~~N~~~~~iG-AR~LrtilE~~l~  402 (441)
T TIGR00390       326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNI--EFSDEAIKRIAELAYNVNEKTENIG-ARRLHTVLERLLE  402 (441)
T ss_pred             eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEE--EEeHHHHHHHHHHHHHhcccccccc-hhhHHHHHHHHHH
Confidence            99999999999999999    556777766666676665  7889999987766553  2234455 8999999999855


Q ss_pred             hhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          410 NLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      ....-.-  . .......|+.+-+.+.++.+.
T Consensus       403 d~~fe~p--~-~~~~~v~I~~~~V~~~l~~~~  431 (441)
T TIGR00390       403 DISFEAP--D-LSGQNITIDADYVSKKLGALV  431 (441)
T ss_pred             HHHhcCC--C-CCCCEEEECHHHHHhHHHHHH
Confidence            4433221  1 123456889888888777653

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.87  E-value=2.1e-21  Score=195.61  Aligned_cols=213  Identities=21%  Similarity=0.265  Sum_probs=153.9

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CC-CCCeE
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LP-TDRVT  242 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~-~~~~~  242 (445)
                      ..|++++|+++.++.++..+                ....+.++||+||||||||++||++++.+.+...  .. ..+|+
T Consensus        62 ~~f~~iiGqs~~i~~l~~al----------------~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi  125 (531)
T TIGR02902        62 KSFDEIIGQEEGIKALKAAL----------------CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV  125 (531)
T ss_pred             CCHHHeeCcHHHHHHHHHHH----------------hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence            45788999999988887531                1345779999999999999999999998765322  11 35899


Q ss_pred             Eeecccc-------cccccC--------------Cch--hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHH
Q 013316          243 EVQRTDL-------VGEFVG--------------HTG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEE  299 (445)
Q Consensus       243 ~~~~~~l-------~~~~~g--------------~~~--~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~  299 (445)
                      +++|+..       ...++|              .++  ......+..+.+++|||||||.+.+           ..|+.
T Consensus       126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-----------~~q~~  194 (531)
T TIGR02902       126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-----------VQMNK  194 (531)
T ss_pred             EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-----------HHHHH
Confidence            9998641       111222              111  1123367788999999999999987           77888


Q ss_pred             HHhhccCC------------------------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHH
Q 013316          300 IMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA  349 (445)
Q Consensus       300 ll~~~~~~------------------------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~  349 (445)
                      |++.|+++                              ++.+|++|++.+..    .+|++++|| ..+.|++|+.+|+.
T Consensus       195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~----L~paLrsR~-~~I~f~pL~~eei~  269 (531)
T TIGR02902       195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEE----IPPALRSRC-VEIFFRPLLDEEIK  269 (531)
T ss_pred             HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCccc----CChHHhhhh-heeeCCCCCHHHHH
Confidence            88777642                              24677787766543    389999998 78899999999999


Q ss_pred             HHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhcc
Q 013316          350 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT  429 (445)
Q Consensus       350 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  429 (445)
                      +|+++.+++..           ..++++++..+. .+.       .|+|++.++++.|......         ++...|+
T Consensus       270 ~Il~~~a~k~~-----------i~is~~al~~I~-~y~-------~n~Rel~nll~~Aa~~A~~---------~~~~~It  321 (531)
T TIGR02902       270 EIAKNAAEKIG-----------INLEKHALELIV-KYA-------SNGREAVNIVQLAAGIALG---------EGRKRIL  321 (531)
T ss_pred             HHHHHHHHHcC-----------CCcCHHHHHHHH-Hhh-------hhHHHHHHHHHHHHHHHhh---------CCCcEEc
Confidence            99999888642           256777877444 332       2789999999998543211         1234799


Q ss_pred             HHHHHHHHH
Q 013316          430 LEDLEAGLK  438 (445)
Q Consensus       430 ~~d~~~a~~  438 (445)
                      .+|+++++.
T Consensus       322 ~~dI~~vl~  330 (531)
T TIGR02902       322 AEDIEWVAE  330 (531)
T ss_pred             HHHHHHHhC
Confidence            999999885

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.87  E-value=8.2e-21  Score=179.91  Aligned_cols=165  Identities=16%  Similarity=0.215  Sum_probs=117.9

Q ss_pred             cCcEEEEcCccccccCCCCCCchhHH-HHHHHHHhhccC------------CcEEEEEecCchhHHHHHhhCcccccccc
Q 013316          269 EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGYSEPMKRVIASNEGFCRRVT  335 (445)
Q Consensus       269 ~~~il~lDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~  335 (445)
                      +.|||||||||+|+.+.++.+.+.+. -+|..||..+++            ..+.+|+++.-... ..-..-|.|..||+
T Consensus       249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~P  327 (443)
T PRK05201        249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFP  327 (443)
T ss_pred             cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccc
Confidence            56999999999999875433444444 488889999987            46788888752211 11112599999999


Q ss_pred             cceeCCCCCHHHHHHHH----HHHHhcccccccccccccCCcccHHHHHHHHHHHHH--HhhhcccCchhhHHHHHHHHH
Q 013316          336 KFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT--EKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       336 ~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      .++.+.+++.+++..||    ...++++..-+..+++.+  .++++++.++......  ...+..| +|-|+.++|+...
T Consensus       328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L--~Ftd~Al~~IA~~A~~~N~~~~~iG-AR~LrtI~E~~L~  404 (443)
T PRK05201        328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTL--EFTDDAIRRIAEIAYQVNEKTENIG-ARRLHTVMEKLLE  404 (443)
T ss_pred             eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEE--EEcHHHHHHHHHHHHHhcccccccc-hhhHHHHHHHHHH
Confidence            99999999999999999    557777766677676665  7889999987766653  2234556 9999999999955


Q ss_pred             hhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          410 NLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      ....-.-  .. ......|+.+-+...++.+
T Consensus       405 d~~Fe~p--~~-~~~~v~I~~~~V~~~l~~l  432 (443)
T PRK05201        405 DISFEAP--DM-SGETVTIDAAYVDEKLGDL  432 (443)
T ss_pred             HHhccCC--CC-CCCEEEECHHHHHHHHHHH
Confidence            4332221  11 2345678888888777654

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.86  E-value=1.8e-21  Score=185.02  Aligned_cols=205  Identities=17%  Similarity=0.187  Sum_probs=156.4

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      +++++|.++.++.+.+.+..+              +....+|+|+|++||||+++|++||..+.+    ...+|+.++|+
T Consensus         5 ~~~liG~S~~~~~~~~~i~~~--------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r----~~~pfv~v~c~   66 (326)
T PRK11608          5 KDNLLGEANSFLEVLEQVSRL--------------APLDKPVLIIGERGTGKELIASRLHYLSSR----WQGPFISLNCA   66 (326)
T ss_pred             cCccEECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCc----cCCCeEEEeCC
Confidence            456999999999999877766              456789999999999999999999987654    34499999999


Q ss_pred             ccc-----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------
Q 013316          248 DLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  307 (445)
Q Consensus       248 ~l~-----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  307 (445)
                      .+.     +.+||+...       .....|..+.+|+|||||||.+..           ..|..|+..++.+        
T Consensus        67 ~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~  135 (326)
T PRK11608         67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-----------LVQEKLLRVIEYGELERVGGS  135 (326)
T ss_pred             CCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH-----------HHHHHHHHHHhcCcEEeCCCC
Confidence            863     446665321       123467889999999999999887           7788888888753        


Q ss_pred             -----cEEEEEecCchhHHHHH--hhCccccccc-ccceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316          308 -----KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  377 (445)
Q Consensus       308 -----~~~~i~a~~~~~~~~~~--~~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  377 (445)
                           ++.+|++++.+......  ...+.|..|| ...|.+|++.  .+|+..++++++.+....++.   ...+.++++
T Consensus       136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~---~~~~~~s~~  212 (326)
T PRK11608        136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL---PLFPGFTER  212 (326)
T ss_pred             ceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC---CCCCCCCHH
Confidence                 25677776655432221  1236677788 4678999998  589999999999886544331   112468899


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          378 AIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      ++..+..+.|      |||.|+|+++++++...
T Consensus       213 al~~L~~y~W------PGNvrEL~~vl~~a~~~  239 (326)
T PRK11608        213 ARETLLNYRW------PGNIRELKNVVERSVYR  239 (326)
T ss_pred             HHHHHHhCCC------CcHHHHHHHHHHHHHHh
Confidence            9999999888      99999999999998653

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.85  E-value=5.1e-20  Score=181.33  Aligned_cols=182  Identities=25%  Similarity=0.360  Sum_probs=137.7

Q ss_pred             HHHhhhcchHHHHH---HHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQ---LRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      .+++++|++++...   +.+++.                .....+++|+||||||||++|+.+++.+..       .|+.
T Consensus        10 ~l~d~vGq~~~v~~~~~L~~~i~----------------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-------~~~~   66 (413)
T PRK13342         10 TLDEVVGQEHLLGPGKPLRRMIE----------------AGRLSSMILWGPPGTGKTTLARIIAGATDA-------PFEA   66 (413)
T ss_pred             CHHHhcCcHHHhCcchHHHHHHH----------------cCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEE
Confidence            56789999988665   665442                234568999999999999999999998765       7888


Q ss_pred             eecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  316 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~  316 (445)
                      ++++..       +...++++++.+       ++.||||||||.+..           ..++.|+..++++.+++|++|+
T Consensus        67 l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-----------~~q~~LL~~le~~~iilI~att  128 (413)
T PRK13342         67 LSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-----------AQQDALLPHVEDGTITLIGATT  128 (413)
T ss_pred             Eecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----------HHHHHHHHHhhcCcEEEEEeCC
Confidence            877532       233455555544       568999999998875           5678889999999999999988


Q ss_pred             chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316          317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  396 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n  396 (445)
                      .++...+   ++++++|| ..+.|++++.+++..+++..+.+...     ++   ..++++++..+. ..+      .||
T Consensus       129 ~n~~~~l---~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~-----~~---i~i~~~al~~l~-~~s------~Gd  189 (413)
T PRK13342        129 ENPSFEV---NPALLSRA-QVFELKPLSEEDIEQLLKRALEDKER-----GL---VELDDEALDALA-RLA------NGD  189 (413)
T ss_pred             CChhhhc---cHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc-----CC---CCCCHHHHHHHH-HhC------CCC
Confidence            7665443   89999999 88999999999999999998876321     11   245666766554 444      577


Q ss_pred             chhhHHHHHHHH
Q 013316          397 GGLVDPMLVNAR  408 (445)
Q Consensus       397 ~r~l~~~~~~~~  408 (445)
                      .|.+.++++.+.
T Consensus       190 ~R~aln~Le~~~  201 (413)
T PRK13342        190 ARRALNLLELAA  201 (413)
T ss_pred             HHHHHHHHHHHH
Confidence            888888888873

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.85  E-value=7.7e-21  Score=189.53  Aligned_cols=201  Identities=16%  Similarity=0.156  Sum_probs=149.4

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHH--------HHHcCCCCC
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL--------LYMVGILPT  238 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~--------~~~~~~~~~  238 (445)
                      .|++++|.++.++++.+.+..+              +....+|||+|++||||+++|++||..        +.+    ..
T Consensus       217 ~f~~iiG~S~~m~~~~~~i~~~--------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r----~~  278 (538)
T PRK15424        217 VLGDLLGQSPQMEQVRQTILLY--------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGK----KS  278 (538)
T ss_pred             chhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCcc----CC
Confidence            4778999999999998877655              456789999999999999999999997        333    34


Q ss_pred             CCeEEeecccc-----cccccCCchhH--------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316          239 DRVTEVQRTDL-----VGEFVGHTGPK--------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  305 (445)
Q Consensus       239 ~~~~~~~~~~l-----~~~~~g~~~~~--------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  305 (445)
                      .||+.++|+.+     .+.+||+....        -...|+.|.+|+||||||+.+..           ..|..|+..++
T Consensus       279 ~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-----------~~Q~kLl~~L~  347 (538)
T PRK15424        279 HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL-----------PLQTRLLRVLE  347 (538)
T ss_pred             CCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH-----------HHHHHHHhhhh
Confidence            59999999975     35577863321        23478899999999999988876           88899999997


Q ss_pred             CCc-------------EEEEEecCchhHHHHHh--hCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccc
Q 013316          306 GGK-------------VVVIFAGYSEPMKRVIA--SNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYG  367 (445)
Q Consensus       306 ~~~-------------~~~i~a~~~~~~~~~~~--~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~  367 (445)
                      ++.             +.+|++|+.+....+.+  -.+.|..|+. ..|.+|++.  .+|+..++++++++.....+   
T Consensus       348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~---  424 (538)
T PRK15424        348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS---  424 (538)
T ss_pred             cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC---
Confidence            643             46777777665433211  1244555764 667888887  58999999999987533221   


Q ss_pred             cccCCcccHHHH-------HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          368 FKLHSSCSMDAI-------AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       368 ~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                          ..++++++       ..+..+.|      |||.|+|+++++++.-
T Consensus       425 ----~~~~~~a~~~~~~a~~~L~~y~W------PGNvREL~nvier~~i  463 (538)
T PRK15424        425 ----APFSAALRQGLQQCETLLLHYDW------PGNVRELRNLMERLAL  463 (538)
T ss_pred             ----CCCCHHHHHhhHHHHHHHHhCCC------CchHHHHHHHHHHHHH
Confidence                12444443       55666666      9999999999999855

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.85  E-value=6.5e-20  Score=177.81  Aligned_cols=255  Identities=20%  Similarity=0.312  Sum_probs=166.1

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCC---CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK---VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT  238 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~  238 (445)
                      ++...|++ ++|++.+++.+...+..   +..+-.....   ....+..++||+||||||||++|+++|..++.      
T Consensus        64 ~i~~~L~~~ViGq~~ak~~l~~av~~---~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~------  134 (412)
T PRK05342         64 EIKAHLDQYVIGQERAKKVLSVAVYN---HYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV------  134 (412)
T ss_pred             HHHHHHhhHeeChHHHHHHHHHHHHH---HHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC------
Confidence            34555654 89999999988653311   1111111110   11224578999999999999999999998876      


Q ss_pred             CCeEEeeccccc-ccccCCchhH-HHHH-------HHHccCcEEEEcCccccccCCCCC--Cchh-HHHHHHHHHhhccC
Q 013316          239 DRVTEVQRTDLV-GEFVGHTGPK-TRRR-------IKEAEGGILFVDEAYRLIPMQKAD--DKDY-GIEALEEIMSVMDG  306 (445)
Q Consensus       239 ~~~~~~~~~~l~-~~~~g~~~~~-~~~~-------~~~a~~~il~lDEid~l~~~~~~~--~~~~-~~~~~~~ll~~~~~  306 (445)
                       +|+.++++.+. ..|+|+.... +..+       +..+.++||||||||++.+++.+.  ..+. +..+|+.||+.|++
T Consensus       135 -pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg  213 (412)
T PRK05342        135 -PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG  213 (412)
T ss_pred             -CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence             89999998875 3588875443 3333       345678999999999999864321  1222 23588899999974


Q ss_pred             C-----------------------cEEEEEecCchhH----------------------------HHH---------H--
Q 013316          307 G-----------------------KVVVIFAGYSEPM----------------------------KRV---------I--  324 (445)
Q Consensus       307 ~-----------------------~~~~i~a~~~~~~----------------------------~~~---------~--  324 (445)
                      .                       ++.+|++++-...                            ..+         .  
T Consensus       214 ~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~  293 (412)
T PRK05342        214 TVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKF  293 (412)
T ss_pred             CeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHH
Confidence            2                       1223322210000                            000         0  


Q ss_pred             hhCcccccccccceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316          325 ASNEGFCRRVTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV  400 (445)
Q Consensus       325 ~~~~~l~~R~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l  400 (445)
                      -..|+|..|+|.++.|.+++.+++..|+.    ..+++....+..+++.+  .++++++.++++..+   .+..| +|-|
T Consensus       294 gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L--~~t~~al~~Ia~~~~---~~~~G-AR~L  367 (412)
T PRK05342        294 GLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVEL--EFTDEALEAIAKKAI---ERKTG-ARGL  367 (412)
T ss_pred             hhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EECHHHHHHHHHhCC---CCCCC-CchH
Confidence            02589999999999999999999999998    45555544444455544  778889888876643   23345 8999


Q ss_pred             HHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHH
Q 013316          401 DPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA  435 (445)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  435 (445)
                      +.++++.+......+...  .......|+.+.+..
T Consensus       368 rriie~~l~~~~~~~p~~--~~~~~v~I~~~~v~~  400 (412)
T PRK05342        368 RSILEEILLDVMFELPSR--EDVEKVVITKEVVEG  400 (412)
T ss_pred             HHHHHHHhHHHHHhcccc--CCCceEEECHHHhcc
Confidence            999999977666544221  122345788887753

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.84  E-value=1.5e-20  Score=187.87  Aligned_cols=203  Identities=17%  Similarity=0.149  Sum_probs=154.4

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++++|.++.++.+.+.+..+              +....+|||+|++||||+++|++||..+.+    ...||+.++
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~--------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r----~~~pfv~in  270 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLY--------------ARSDATVLILGESGTGKELVAQAIHQLSGR----RDFPFVAIN  270 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCc----CCCCEEEec
Confidence            34778999999999998877655              456789999999999999999999998755    345999999


Q ss_pred             cccc-----cccccCCchhH--------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc----
Q 013316          246 RTDL-----VGEFVGHTGPK--------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----  308 (445)
Q Consensus       246 ~~~l-----~~~~~g~~~~~--------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----  308 (445)
                      |+.+     .+.+||+....        ....|+.+.+|+||||||+.+..           ..|..|+..++++.    
T Consensus       271 C~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-----------~~Q~~Ll~~L~~~~~~r~  339 (526)
T TIGR02329       271 CGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL-----------PLQTRLLRVLEEREVVRV  339 (526)
T ss_pred             cccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH-----------HHHHHHHHHHhcCcEEec
Confidence            9875     34577763321        24578889999999999988876           78899999987643    


Q ss_pred             ---------EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcc
Q 013316          309 ---------VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSC  374 (445)
Q Consensus       309 ---------~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~  374 (445)
                               +.+|++++.+....+.  ...+.|..|+. ..|.+|++.  .+|+..++++++.+.....       ...+
T Consensus       340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-------~~~~  412 (526)
T TIGR02329       340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL-------RLPD  412 (526)
T ss_pred             CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc-------CCCC
Confidence                     3677777666543321  11244555774 678999998  5899999999999865322       1236


Q ss_pred             cHHHHHH-------HHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          375 SMDAIAA-------LIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       375 ~~~~l~~-------~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      +++++..       +..+.|      |||.|+|+++++++.-.
T Consensus       413 ~~~a~~~~~~~~~~L~~y~W------PGNvrEL~nvier~~i~  449 (526)
T TIGR02329       413 SEAAAQVLAGVADPLQRYPW------PGNVRELRNLVERLALE  449 (526)
T ss_pred             CHHHHHHhHHHHHHHHhCCC------CchHHHHHHHHHHHHHh
Confidence            7777776       777777      99999999999998653

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.84  E-value=8e-21  Score=193.46  Aligned_cols=203  Identities=19%  Similarity=0.249  Sum_probs=156.3

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .++.++|.++.++++.+.+..+              +....+|+|+||+||||+++|++||..+.+    ...+|+.++|
T Consensus       194 ~~~~liG~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r----~~~pfv~i~c  255 (534)
T TIGR01817       194 KEDGIIGKSPAMRQVVDQARVV--------------ARSNSTVLLRGESGTGKELIAKAIHYLSPR----AKRPFVKVNC  255 (534)
T ss_pred             ccCceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCccHHHHHHHHHHhCCC----CCCCeEEeec
Confidence            3557999999999998877655              456789999999999999999999998765    3449999999


Q ss_pred             cccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316          247 TDLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  307 (445)
Q Consensus       247 ~~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  307 (445)
                      +.+.     +.+||+....       ....|+.+.+|+||||||+.+.+           ..|..|+..++.+       
T Consensus       256 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~~~  324 (534)
T TIGR01817       256 AALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP-----------AFQAKLLRVLQEGEFERVGG  324 (534)
T ss_pred             CCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH-----------HHHHHHHHHHhcCcEEECCC
Confidence            8753     3456653221       12347788899999999999887           7788899988763       


Q ss_pred             ------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316          308 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  376 (445)
Q Consensus       308 ------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~  376 (445)
                            ++.+|++++.+....+.  ...+.|..|+. ..|.+|++.  .+|+..|+++++.+...+.+     ....+++
T Consensus       325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~-----~~~~~s~  399 (534)
T TIGR01817       325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG-----RPLTITP  399 (534)
T ss_pred             CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcC-----CCCCCCH
Confidence                  26788887766544322  12356667885 578999998  79999999999998654332     1257889


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      +++..+..+.|      |||.|+|+++++++..
T Consensus       400 ~a~~~L~~~~W------PGNvrEL~~v~~~a~~  426 (534)
T TIGR01817       400 SAIRVLMSCKW------PGNVRELENCLERTAT  426 (534)
T ss_pred             HHHHHHHhCCC------CChHHHHHHHHHHHHH
Confidence            99999998888      9999999999999864

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PHA02791 ankyrin-like protein; Provisional

Probab=99.84  E-value=1.9e-20  Score=173.58  Aligned_cols=130  Identities=15%  Similarity=0.050  Sum_probs=66.2

Q ss_pred             CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCC--------
Q 013316           13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY--------   84 (445)
Q Consensus        13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~--------   84 (445)
                      +.||||+|+..|+.++++.|+. .+++++..+. .|+||||+|+..|+.+++++|+++    |++++.++..        
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~-~Gadvn~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~----gadin~~~~~g~~TpL~~  134 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLF-SGMDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYH  134 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCcCccCCCCCcHHHHH
Confidence            3455555555555555544432 3444444443 355555555555555555555543    3444444333        


Q ss_pred             -------------------------CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCh-hhhhhcCCCChHHHHHH
Q 013316           85 -------------------------GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTP-LDHLSNGPGSAKLRELL  138 (445)
Q Consensus        85 -------------------------g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tp-l~~~a~~~~~~~i~~~l  138 (445)
                                               |.||||+|+..|+.+++++|+++|++++.+|..|.|| | |+|+..++.+++++|
T Consensus       135 Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L-~~Aa~~~~~e~v~lL  213 (284)
T PHA02791        135 AVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDI-KLAIDNKDLEMLQAL  213 (284)
T ss_pred             HHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHH-HHHHHcCCHHHHHHH
Confidence                                     4555555555555555555555555555555555544 5 445555555555555


Q ss_pred             HhhhhhHHhhh
Q 013316          139 LWHSEEQRKRR  149 (445)
Q Consensus       139 l~~~~~~~~~~  149 (445)
                      +++|++....+
T Consensus       214 l~~Ga~in~~~  224 (284)
T PHA02791        214 FKYDINIYSVN  224 (284)
T ss_pred             HHCCCCCccCc
Confidence            55555544443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.84  E-value=5.4e-21  Score=185.06  Aligned_cols=140  Identities=26%  Similarity=0.300  Sum_probs=107.3

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN   82 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d   82 (445)
                      |.+++..+ .|.|+|||||.+|+++++++|+. +++++|......+.||||||+++|++.+|.+|+++    |+|++.+|
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqh----GAdpt~~D  142 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLIS-HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQH----GADPTLKD  142 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHH-cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHc----CCCCceec
Confidence            55555555 68888888888888888877664 57788888755677888888888888888888885    78888888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~  149 (445)
                      .+|.+|+|+|+..++...+.+|+.+|++++.+|.+|.||| ++|+..+....+..|+..++.....+
T Consensus       143 ~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpL-mwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  143 KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPL-MWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHH-HHHHHhcccHHHHHHHHhcccccccc
Confidence            8888888888888888888888888888888888888888 55555555555777777776655544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.84  E-value=9.3e-21  Score=183.45  Aligned_cols=152  Identities=24%  Similarity=0.307  Sum_probs=121.4

Q ss_pred             CCCccCccCCC--CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316            1 MQKNQDRRSRS--AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL   78 (445)
Q Consensus         1 l~~~~~~~~~~--~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v   78 (445)
                      +++|+++|+..  .+.|||||||++|+..++..|+ ++|++++..|. .|.+|||.|+++||..+|-++|.+    ++|+
T Consensus        98 i~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLl-qhGAdpt~~D~-~G~~~lHla~~~~~~~~vayll~~----~~d~  171 (600)
T KOG0509|consen   98 ISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLL-QHGADPTLKDK-QGLTPLHLAAQFGHTALVAYLLSK----GADI  171 (600)
T ss_pred             HHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHH-HcCCCCceecC-CCCcHHHHHHHhCchHHHHHHHHh----cccC
Confidence            46788888776  5888888888888888887655 57888888887 788888888888888888888875    6888


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      |.+|.+|+||||||+.+|+...+..|++.|+.+..+| ..|+||| |+|...++..++.++++.+++....+..+.++..
T Consensus       172 d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpL-Hwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~  250 (600)
T KOG0509|consen  172 DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPL-HWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFD  250 (600)
T ss_pred             CCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchH-HHHHhcCCcceEehhhhcCCcccccccCCCCHHH
Confidence            8888888888888888888887888888888888877 8888888 6777777777777777777776666665555555


Q ss_pred             HH
Q 013316          158 KA  159 (445)
Q Consensus       158 ~a  159 (445)
                      .+
T Consensus       251 LA  252 (600)
T KOG0509|consen  251 LA  252 (600)
T ss_pred             HH
Confidence            44

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.84  E-value=8.7e-20  Score=188.11  Aligned_cols=190  Identities=20%  Similarity=0.284  Sum_probs=136.8

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++++|++.+......+.+.+             ......+++|+||||||||++|+++|+.+..       +|+.++
T Consensus        25 ~tldd~vGQe~ii~~~~~L~~~i-------------~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-------~f~~ln   84 (725)
T PRK13341         25 RTLEEFVGQDHILGEGRLLRRAI-------------KADRVGSLILYGPPGVGKTTLARIIANHTRA-------HFSSLN   84 (725)
T ss_pred             CcHHHhcCcHHHhhhhHHHHHHH-------------hcCCCceEEEECCCCCCHHHHHHHHHHHhcC-------cceeeh
Confidence            35778999998875322221111             1335568999999999999999999998765       677777


Q ss_pred             cccccccccCCchhHHHHHHHHc--------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA--------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a--------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++..       ....++..++.+        .+.+|||||||.+..           ..++.|+..++++.+++|++++.
T Consensus        85 a~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~lE~g~IiLI~aTTe  146 (725)
T PRK13341         85 AVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWVENGTITLIGATTE  146 (725)
T ss_pred             hhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHhcCceEEEEEecCC
Confidence            6531       111222322221        347999999999875           55778899999999999999888


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ++...+   ++++++|+ ..+.|++++.+++..+++.++.+....++..    ...++++++..+. ..+      +||.
T Consensus       147 np~~~l---~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~----~v~I~deaL~~La-~~s------~GD~  211 (725)
T PRK13341        147 NPYFEV---NKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDR----KVDLEPEAEKHLV-DVA------NGDA  211 (725)
T ss_pred             ChHhhh---hhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCc----ccCCCHHHHHHHH-HhC------CCCH
Confidence            766544   78999997 7899999999999999999987543222212    2356777877555 444      7889


Q ss_pred             hhhHHHHHHHH
Q 013316          398 GLVDPMLVNAR  408 (445)
Q Consensus       398 r~l~~~~~~~~  408 (445)
                      |.+.++++.+.
T Consensus       212 R~lln~Le~a~  222 (725)
T PRK13341        212 RSLLNALELAV  222 (725)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.83  E-value=5.5e-20  Score=185.59  Aligned_cols=204  Identities=20%  Similarity=0.201  Sum_probs=157.6

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      ...++|.+..++++.+.+..+              +..+.+|+|+|++||||+++|++||..+.+    ...+|+.++|+
T Consensus       186 ~~~iig~s~~~~~~~~~i~~~--------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r----~~~p~v~v~c~  247 (509)
T PRK05022        186 EGEMIGQSPAMQQLKKEIEVV--------------AASDLNVLILGETGVGKELVARAIHAASPR----ADKPLVYLNCA  247 (509)
T ss_pred             CCceeecCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhCCc----CCCCeEEEEcc
Confidence            456999999999999877765              567889999999999999999999998765    34499999999


Q ss_pred             ccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------
Q 013316          248 DLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  307 (445)
Q Consensus       248 ~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  307 (445)
                      .+.     +.+||+....       ....|+.+.+|+|||||||.+..           ..|.+|+..++++        
T Consensus       248 ~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~  316 (509)
T PRK05022        248 ALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSD  316 (509)
T ss_pred             cCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCC
Confidence            763     4467753221       12357889999999999998886           7888999988764        


Q ss_pred             -----cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316          308 -----KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  377 (445)
Q Consensus       308 -----~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  377 (445)
                           ++.+|++++.+....+.  ...+.|..|+. ..|.+|++.  .+|+..++++++.+...+++.    -...++++
T Consensus       317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~----~~~~~s~~  392 (509)
T PRK05022        317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGL----RSLRLSPA  392 (509)
T ss_pred             cceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCC----CCCCCCHH
Confidence                 35778877766544321  12355666775 568899988  589999999999987654432    13478899


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          378 AIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      ++..+..+.|      |||.|+|+++++++.-.
T Consensus       393 a~~~L~~y~W------PGNvrEL~~~i~ra~~~  419 (509)
T PRK05022        393 AQAALLAYDW------PGNVRELEHVISRAALL  419 (509)
T ss_pred             HHHHHHhCCC------CCcHHHHHHHHHHHHHh
Confidence            9999999888      99999999999998653

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.1e-19  Score=184.26  Aligned_cols=221  Identities=21%  Similarity=0.363  Sum_probs=169.0

Q ss_pred             HHHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316          161 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  239 (445)
Q Consensus       161 ~~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~  239 (445)
                      +..++..+.+ ++||+++...+.+.++       +...|+....+|...+||.||+|+|||.+|+++|..+.-..    .
T Consensus       482 ll~le~~L~~rViGQd~AV~avs~aIr-------raRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e----~  550 (786)
T COG0542         482 LLNLERRLKKRVIGQDEAVEAVSDAIR-------RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE----Q  550 (786)
T ss_pred             HHHHHHHHhcceeChHHHHHHHHHHHH-------HHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC----c
Confidence            3345555554 9999999888887554       55677877777778999999999999999999999987421    2


Q ss_pred             CeEEeeccc---------cccc---ccCC-chhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC
Q 013316          240 RVTEVQRTD---------LVGE---FVGH-TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG  306 (445)
Q Consensus       240 ~~~~~~~~~---------l~~~---~~g~-~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~  306 (445)
                      .++.++.|.         |++.   |+|+ .+..++..++..+++||+||||++.+|           ++++.||+.||+
T Consensus       551 aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp-----------dV~nilLQVlDd  619 (786)
T COG0542         551 ALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP-----------DVFNLLLQVLDD  619 (786)
T ss_pred             cceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH-----------HHHHHHHHHhcC
Confidence            677777776         4443   6676 456778888888999999999999999           999999999997


Q ss_pred             Cc-------------EEEEEecCchhHHHHH------------------------hhCcccccccccceeCCCCCHHHHH
Q 013316          307 GK-------------VVVIFAGYSEPMKRVI------------------------ASNEGFCRRVTKFFHFNDFNSEELA  349 (445)
Q Consensus       307 ~~-------------~~~i~a~~~~~~~~~~------------------------~~~~~l~~R~~~~i~~~~~~~~~~~  349 (445)
                      |+             .++|+++|-- ...+.                        .-.|+|+.|+|.+|.|.+++.+++.
T Consensus       620 GrLTD~~Gr~VdFrNtiIImTSN~G-s~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~  698 (786)
T COG0542         620 GRLTDGQGRTVDFRNTIIIMTSNAG-SEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLE  698 (786)
T ss_pred             CeeecCCCCEEecceeEEEEecccc-hHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHH
Confidence            53             3666665422 11100                        0028899999999999999999999


Q ss_pred             HHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          350 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       350 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      +|++..+.+...++...++.+  .+++++..++....+.   ...| +|-+++++++-+..
T Consensus       699 ~Iv~~~L~~l~~~L~~~~i~l--~~s~~a~~~l~~~gyd---~~~G-ARpL~R~Iq~~i~~  753 (786)
T COG0542         699 RIVDLQLNRLAKRLAERGITL--ELSDEAKDFLAEKGYD---PEYG-ARPLRRAIQQEIED  753 (786)
T ss_pred             HHHHHHHHHHHHHHHhCCceE--EECHHHHHHHHHhccC---CCcC-chHHHHHHHHHHHH
Confidence            999999999988887555554  7888898888877764   2233 88888888876553

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.83  E-value=8.2e-21  Score=191.35  Aligned_cols=265  Identities=18%  Similarity=0.196  Sum_probs=181.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHH
Q 013316           86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELE  165 (445)
Q Consensus        86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~  165 (445)
                      .+|+.+.+..+..+.+...++.|++            +++.++....++...+.............       . .....
T Consensus        75 ~~pvIvlt~~~~~~~~~~a~~~Ga~------------~~l~KP~~~~~L~~~i~~~l~~~~~~~~~-------~-~~~~~  134 (469)
T PRK10923         75 MLPVIIMTAHSDLDAAVSAYQQGAF------------DYLPKPFDIDEAVALVERAISHYQEQQQP-------R-NIQVN  134 (469)
T ss_pred             CCeEEEEECCCCHHHHHHHHhcCcc------------eEEecCCcHHHHHHHHHHHHHHHHHHHhh-------h-hhhhc
Confidence            3454444555666777777788887            56677666666655553222111100000       0 00111


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+.+++|.+.....+.+.+..+              .....++++.|++|||||++|+++|..+.+    ...+|+.++
T Consensus       135 ~~~~~lig~s~~~~~l~~~~~~~--------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~----~~~~~i~i~  196 (469)
T PRK10923        135 GPTTDIIGEAPAMQDVFRIIGRL--------------SRSSISVLINGESGTGKELVAHALHRHSPR----AKAPFIALN  196 (469)
T ss_pred             cccccceecCHHHHHHHHHHHHH--------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCC----CCCCeEeee
Confidence            23456899998888887765543              345678999999999999999999997654    345999999


Q ss_pred             ccccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----
Q 013316          246 RTDLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-----  308 (445)
Q Consensus       246 ~~~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-----  308 (445)
                      |+.+.     +.++|+....       ....|+.+.+|+||||||+.+..           ..|..|++.++.+.     
T Consensus       197 c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~~  265 (469)
T PRK10923        197 MAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL-----------DVQTRLLRVLADGQFYRVG  265 (469)
T ss_pred             CCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH-----------HHHHHHHHHHhcCcEEeCC
Confidence            98753     3456653221       12357778899999999999887           77889999887643     


Q ss_pred             --------EEEEEecCchhHHHHH--hhCccccccc-ccceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316          309 --------VVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS  375 (445)
Q Consensus       309 --------~~~i~a~~~~~~~~~~--~~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~  375 (445)
                              +.+|++++.+....+.  ...+.|..|| ...|.+|++.  .+|+..++++++++.....+.   . ...++
T Consensus       266 ~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~---~-~~~~~  341 (469)
T PRK10923        266 GYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGV---E-AKLLH  341 (469)
T ss_pred             CCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCC---C-CCCcC
Confidence                    3677777665443221  1135667787 4778888887  689999999999886544321   1 23578


Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ++++..+..+.|      |||.|+|+++++++..
T Consensus       342 ~~a~~~L~~~~w------pgNv~eL~~~i~~~~~  369 (469)
T PRK10923        342 PETEAALTRLAW------PGNVRQLENTCRWLTV  369 (469)
T ss_pred             HHHHHHHHhCCC------CChHHHHHHHHHHHHH
Confidence            899999999988      9999999999999865

>PHA02791 ankyrin-like protein; Provisional

Probab=99.83  E-value=3.2e-20  Score=172.06  Aligned_cols=126  Identities=18%  Similarity=0.132  Sum_probs=113.6

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      ...|.||||+||..|+.++++.|+. .+++++..+   |+||||+|+..|+.+++++|+.+    |++++.+|..|.|||
T Consensus        27 D~~G~TpLh~Aa~~g~~eiv~~Ll~-~ga~~n~~d---~~TpLh~Aa~~g~~eiV~lLL~~----Gadvn~~d~~G~TpL   98 (284)
T PHA02791         27 DVHGHSALYYAIADNNVRLVCTLLN-AGALKNLLE---NEFPLHQAATLEDTKIVKILLFS----GMDDSQFDDKGNTAL   98 (284)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-CcCCCcCCC---CCCHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHH
Confidence            4479999999999999999998775 577777654   68999999999999999999985    889999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccccCCC-ChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGK-TPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      |+|+..|+.+++++|+++|++++.++..|+ ||| |+|+..++.+++++|++++..
T Consensus        99 h~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL-~~Aa~~g~~eivk~LL~~~~~  153 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSEIPS  153 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHH-HHHHHcCCHHHHHHHHhcCCc
Confidence            999999999999999999999999998885 899 888888999999999987643

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.83  E-value=1.7e-19  Score=186.80  Aligned_cols=243  Identities=16%  Similarity=0.204  Sum_probs=166.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~  243 (445)
                      .++.++|.++..+++.+.+.                .....++||+||||||||++|+.+|+.+....   .+....++.
T Consensus       184 ~~~~liGR~~ei~~~i~iL~----------------r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~  247 (758)
T PRK11034        184 GIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS  247 (758)
T ss_pred             CCCcCcCCCHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence            35569999988777776432                23467889999999999999999998764322   223445666


Q ss_pred             eeccccc--ccccCCchhHHHHHHHH---ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch
Q 013316          244 VQRTDLV--GEFVGHTGPKTRRRIKE---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  318 (445)
Q Consensus       244 ~~~~~l~--~~~~g~~~~~~~~~~~~---a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~  318 (445)
                      ++.+.+.  ..|.|+.+..++++|..   ..++||||||||.+.+.+...++  ..++.+.|...+..+++.+|++||..
T Consensus       248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g--~~d~~nlLkp~L~~g~i~vIgATt~~  325 (758)
T PRK11034        248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKPLLSSGKIRVIGSTTYQ  325 (758)
T ss_pred             ccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc--HHHHHHHHHHHHhCCCeEEEecCChH
Confidence            6655554  35778888888887764   45689999999999876643222  23456667778889999999999999


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  398 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r  398 (445)
                      ++..++..||+|.+|| ..|.++.|+.+++.+|++....++...       ....++++++.... ..+.-++....-..
T Consensus       326 E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~-------h~v~i~~~al~~a~-~ls~ryi~~r~lPd  396 (758)
T PRK11034        326 EFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAH-------HDVRYTAKAVRAAV-ELAVKYINDRHLPD  396 (758)
T ss_pred             HHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhc-------cCCCcCHHHHHHHH-HHhhccccCccChH
Confidence            9888888899999999 689999999999999999877665432       12345566665433 22211111111122


Q ss_pred             hhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          399 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       399 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      .+..+++.|.......     ........|+.+||.+.+..+.
T Consensus       397 Kaidlldea~a~~~~~-----~~~~~~~~v~~~~i~~v~~~~t  434 (758)
T PRK11034        397 KAIDVIDEAGARARLM-----PVSKRKKTVNVADIESVVARIA  434 (758)
T ss_pred             HHHHHHHHHHHhhccC-----cccccccccChhhHHHHHHHHh
Confidence            5566777664432211     0011223688999998887654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.83  E-value=4.5e-20  Score=164.83  Aligned_cols=141  Identities=17%  Similarity=0.141  Sum_probs=79.7

Q ss_pred             CCchHhHHHHHcC--CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC---CcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316           12 AKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGE   86 (445)
Q Consensus        12 ~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~g~~v~~~d~~g~   86 (445)
                      .|.||||+|+..+  +.++++.|+. .|+++|..+...|+||||+|+..   ++.+++++|+++    |+++|.+|..|.
T Consensus        50 ~g~TpLh~a~~~~~~~~eiv~~Ll~-~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~----gadin~~d~~G~  124 (209)
T PHA02859         50 LYETPIFSCLEKDKVNVEILKFLIE-NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS----GSSITEEDEDGK  124 (209)
T ss_pred             cCCCHHHHHHHcCCCCHHHHHHHHH-CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC----CCCCCCcCCCCC
Confidence            4566666666533  5566655443 45666655422466666665542   245666666653    566666666666


Q ss_pred             cHHHHHHH--cCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           87 TPLHMAAK--NGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        87 tpLh~A~~--~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      ||||+|+.  .++.+++++|++.|++++.+|..|.||||.++...++.+++++|+++|+++..++..+.++..
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~  197 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYD  197 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            66666554  245666666666666666666666666633344445566666666666655555544444443

>TIGR00763 lon ATP-dependent protease La

Probab=99.83  E-value=2e-19  Score=189.70  Aligned_cols=239  Identities=18%  Similarity=0.246  Sum_probs=163.4

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  241 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~  241 (445)
                      .....|++ ++|++.+++++.+++......          +.....+++|+||||||||++|++||..++.       +|
T Consensus       313 ~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~----------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-------~~  375 (775)
T TIGR00763       313 RAKEILDEDHYGLKKVKERILEYLAVQKLR----------GKMKGPILCLVGPPGVGKTSLGKSIAKALNR-------KF  375 (775)
T ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhh----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC-------Ce
Confidence            34455554 899999999999865432211          1123347999999999999999999999976       77


Q ss_pred             EEeeccccc---------ccccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----
Q 013316          242 TEVQRTDLV---------GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----  306 (445)
Q Consensus       242 ~~~~~~~l~---------~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----  306 (445)
                      +.++++.+.         ..|+|.....+.+.|..+  ...||||||||++.+..+++       ..+.|++.++.    
T Consensus       376 ~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~  448 (775)
T TIGR00763       376 VRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNN  448 (775)
T ss_pred             EEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCC-------HHHHHHHhcCHHhcC
Confidence            777655421         246777777777778765  34799999999999754321       22345554442    


Q ss_pred             -------------CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccc-cCC
Q 013316          307 -------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-LHS  372 (445)
Q Consensus       307 -------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~-~~~  372 (445)
                                   +++++|+++|...     ..+|+|++|| ..|.|+.|+.+++.+|++.++......  ..++. ...
T Consensus       449 ~f~d~~~~~~~d~s~v~~I~TtN~~~-----~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~--~~~l~~~~~  520 (775)
T TIGR00763       449 AFSDHYLDVPFDLSKVIFIATANSID-----TIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALE--DHGLKPDEL  520 (775)
T ss_pred             ccccccCCceeccCCEEEEEecCCch-----hCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHH--HcCCCcceE
Confidence                         4577777765532     2389999999 589999999999999999887432111  01111 123


Q ss_pred             cccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhcc-CCCCh--hhhhhccHHHHHHHHH
Q 013316          373 SCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-DCLDT--DELRTITLEDLEAGLK  438 (445)
Q Consensus       373 ~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~~~d~~~a~~  438 (445)
                      .++++++.+++..++    +..| +|.|+..+++.++..+..+.. .....  .-...|+.+++++.+.
T Consensus       521 ~~~~~~l~~i~~~~~----~e~g-~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg  584 (775)
T TIGR00763       521 KITDEALLLLIKYYT----REAG-VRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG  584 (775)
T ss_pred             EECHHHHHHHHHhcC----hhcC-ChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence            578889998887554    3344 899999999999888766542 21111  1236899998887764

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.83  E-value=3e-20  Score=187.48  Aligned_cols=206  Identities=16%  Similarity=0.199  Sum_probs=156.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++++|.++.++++.+.++.+              +....+|+|+|++||||+++|+++|..+.+    ...+|+.++
T Consensus       201 ~~f~~~ig~s~~~~~~~~~~~~~--------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r----~~~pfv~in  262 (520)
T PRK10820        201 SAFSQIVAVSPKMRQVVEQARKL--------------AMLDAPLLITGDTGTGKDLLAYACHLRSPR----GKKPFLALN  262 (520)
T ss_pred             ccccceeECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCccHHHHHHHHHHhCCC----CCCCeEEec
Confidence            46778999999888888766554              346778999999999999999999987654    334999999


Q ss_pred             ccccc-----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------
Q 013316          246 RTDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------  307 (445)
Q Consensus       246 ~~~l~-----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------  307 (445)
                      |+.+.     +.+||+...       .....|+.|.+|+||||||+.+.+           ..|..|+.+++++      
T Consensus       263 ca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g  331 (520)
T PRK10820        263 CASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP-----------RMQAKLLRFLNDGTFRRVG  331 (520)
T ss_pred             cccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH-----------HHHHHHHHHHhcCCcccCC
Confidence            99853     346775321       123468889999999999988877           7788898888763      


Q ss_pred             -------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316          308 -------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS  375 (445)
Q Consensus       308 -------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~  375 (445)
                             ++.+|++|+.+....+.  ...+.|..|+. ..|.+|++.  .+|+..++++++++...+.+.    -.+.++
T Consensus       332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~----~~~~ls  407 (520)
T PRK10820        332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGV----PRPKLA  407 (520)
T ss_pred             CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCC----CCCCcC
Confidence                   35677777665543321  12355777874 678888887  578999999999887544331    134688


Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      ++++..+..+.|      |||.|+|+++++++...
T Consensus       408 ~~a~~~L~~y~W------PGNvreL~nvl~~a~~~  436 (520)
T PRK10820        408 ADLNTVLTRYGW------PGNVRQLKNAIYRALTQ  436 (520)
T ss_pred             HHHHHHHhcCCC------CCHHHHHHHHHHHHHHh
Confidence            899998888888      99999999999999764

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.2e-19  Score=162.44  Aligned_cols=192  Identities=18%  Similarity=0.283  Sum_probs=142.1

Q ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC--CCCCCC
Q 013316          163 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDR  240 (445)
Q Consensus       163 ~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~--~~~~~~  240 (445)
                      +....|+.++=-..+|+++..++.....-. ++.....+ .....-+|++||||||||++++++|+.+.-..  .-..+.
T Consensus       136 eF~glWEsLiyds~lK~~ll~Ya~s~l~fs-ek~vntnl-It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~  213 (423)
T KOG0744|consen  136 EFDGLWESLIYDSNLKERLLSYAASALLFS-EKKVNTNL-ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ  213 (423)
T ss_pred             hhhhhHHHHhhcccHHHHHHHHHHHHHHHH-hcCCCCce-eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce
Confidence            456678888888899999988665433222 22222111 12234688999999999999999999885322  234557


Q ss_pred             eEEeecccccccccCCchhHHHHHHHHc------cC--cEEEEcCccccccCCC----CCCchhHHHHHHHHHhhccC--
Q 013316          241 VTEVQRTDLVGEFVGHTGPKTRRRIKEA------EG--GILFVDEAYRLIPMQK----ADDKDYGIEALEEIMSVMDG--  306 (445)
Q Consensus       241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a------~~--~il~lDEid~l~~~~~----~~~~~~~~~~~~~ll~~~~~--  306 (445)
                      ++++++..+.++||+++++.+.++|++-      ++  -.++|||+++|+..|.    ..++....++++.+|.+||+  
T Consensus       214 liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK  293 (423)
T KOG0744|consen  214 LIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK  293 (423)
T ss_pred             EEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988664      33  4567999999987662    22345566899999999996  


Q ss_pred             -CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccc
Q 013316          307 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       307 -~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                       ..-++|++|++- +..+   |-++-+|-|-+.++.+|+...+.+|++..+.++.
T Consensus       294 ~~~NvliL~TSNl-~~si---D~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~  344 (423)
T KOG0744|consen  294 RYPNVLILATSNL-TDSI---DVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI  344 (423)
T ss_pred             cCCCEEEEeccch-HHHH---HHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence             233555554432 2332   8899999999999999999999999999888763

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.83  E-value=1.8e-19  Score=186.58  Aligned_cols=219  Identities=18%  Similarity=0.252  Sum_probs=158.0

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  241 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~  241 (445)
                      .++..+.. ++||+.+++.|.+.+...       ..++....++..++||+||||||||++|+.+|+.++.       +|
T Consensus       451 ~l~~~L~~~ViGQ~~ai~~l~~~i~~~-------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-------~~  516 (758)
T PRK11034        451 NLGDRLKMLVFGQDKAIEALTEAIKMS-------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------EL  516 (758)
T ss_pred             HHHHHhcceEeCcHHHHHHHHHHHHHH-------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------Cc
Confidence            34445543 899999999998866533       2233333344567999999999999999999999865       78


Q ss_pred             EEeeccccc-----ccccC-------Cc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-
Q 013316          242 TEVQRTDLV-----GEFVG-------HT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-  307 (445)
Q Consensus       242 ~~~~~~~l~-----~~~~g-------~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-  307 (445)
                      +.++++.+.     +.++|       +. ...+.+.+....++||||||||++++           ++++.|++.|+++ 
T Consensus       517 i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~  585 (758)
T PRK11034        517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGT  585 (758)
T ss_pred             EEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCe
Confidence            888877643     23333       22 23455666667889999999999987           8899999999864 


Q ss_pred             ------------cEEEEEecCchhHH-------------------HH-HhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316          308 ------------KVVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK  355 (445)
Q Consensus       308 ------------~~~~i~a~~~~~~~-------------------~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~  355 (445)
                                  +.++|++++...-.                   .+ ....|+|..|+|.+|.|++++.+++.+|+..+
T Consensus       586 ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~  665 (758)
T PRK11034        586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF  665 (758)
T ss_pred             eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH
Confidence                        24577776622100                   00 11248999999999999999999999999999


Q ss_pred             HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhh
Q 013316          356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  412 (445)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~  412 (445)
                      +.+...++...++.+  .++++++.++....+   .+..| +|-++.++++-+....
T Consensus       666 l~~~~~~l~~~~i~l--~~~~~~~~~l~~~~~---~~~~G-AR~l~r~i~~~l~~~l  716 (758)
T PRK11034        666 IVELQAQLDQKGVSL--EVSQEARDWLAEKGY---DRAMG-ARPMARVIQDNLKKPL  716 (758)
T ss_pred             HHHHHHHHHHCCCCc--eECHHHHHHHHHhCC---CCCCC-CchHHHHHHHHHHHHH
Confidence            998877776665554  778888887775544   23334 8888998887765433

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1e-19  Score=157.19  Aligned_cols=128  Identities=24%  Similarity=0.322  Sum_probs=114.3

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHh-----hCCCCcCCCCCCCCChHHHHHHhCCc----HHHHHHhhcCCCCCCcccccc
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLR-----ENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      ..|.||||+||..|+.++++.++.     ..+.+++.++. .|+||||+|+..|+    .+++++|+.+    |+++|.+
T Consensus        19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~----gadin~~   93 (169)
T PHA02741         19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD-AGQMCIHIAAEKHEAQLAAEIIDHLIEL----GADINAQ   93 (169)
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC-CCCcHHHHHHHcCChHHHHHHHHHHHHc----CCCCCCC
Confidence            468999999999999999998754     23578888887 79999999999998    5889999985    8899998


Q ss_pred             cC-CCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           82 NM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        82 d~-~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      +. .|+||||+|+..++.+++++|+. .|++++.+|..|+||| +.|...++.+++++|++.++.
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL-~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPF-ELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHH-HHHHHCCCHHHHHHHHHHHHH
Confidence            85 89999999999999999999997 6999999999999999 788888999999999877654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.82  E-value=2.9e-19  Score=188.65  Aligned_cols=215  Identities=18%  Similarity=0.149  Sum_probs=152.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~  243 (445)
                      .++.++|+++..+++.+...                .....+++|+||||||||++|+.+|+.+...   ..+....++.
T Consensus       185 ~ld~~iGr~~ei~~~i~~l~----------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~  248 (852)
T TIGR03345       185 KIDPVLGRDDEIRQMIDILL----------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS  248 (852)
T ss_pred             CCCcccCCHHHHHHHHHHHh----------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence            45679999987665554321                3455689999999999999999999988542   2234456788


Q ss_pred             eecccccc--cccCCchhHHHHHHHHcc----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          244 VQRTDLVG--EFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       244 ~~~~~l~~--~~~g~~~~~~~~~~~~a~----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++.+.+..  .+.|+.+..++++|+++.    +.||||||||.+.+.+++.+.   .++-+.|+..+++|.+.+|+|||.
T Consensus       249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l~~G~l~~IgaTT~  325 (852)
T TIGR03345       249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPALARGELRTIAATTW  325 (852)
T ss_pred             eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHhhCCCeEEEEecCH
Confidence            88877763  578888899999998663    479999999999986543221   134466888899999999999999


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ..+...+..||+|+||| ..|.|++|+.++..+|++.........       ....++++++.... ..+..+...-.-.
T Consensus       326 ~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~-------~~v~i~d~al~~~~-~ls~ryi~~r~LP  396 (852)
T TIGR03345       326 AEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKH-------HGVLILDEAVVAAV-ELSHRYIPGRQLP  396 (852)
T ss_pred             HHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhc-------CCCeeCHHHHHHHH-HHcccccccccCc
Confidence            99988888999999999 789999999999999987665543211       12345666766443 3332222222222


Q ss_pred             hhhHHHHHHHHH
Q 013316          398 GLVDPMLVNARE  409 (445)
Q Consensus       398 r~l~~~~~~~~~  409 (445)
                      .....+++.|+.
T Consensus       397 DKAIdlldea~a  408 (852)
T TIGR03345       397 DKAVSLLDTACA  408 (852)
T ss_pred             cHHHHHHHHHHH
Confidence            233455555543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.82  E-value=3.5e-19  Score=169.32  Aligned_cols=206  Identities=19%  Similarity=0.269  Sum_probs=135.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|+++++++|..++.....           ....+.+++|+||||||||++|+++++.++.       .+.....
T Consensus         2 ~~~~~iG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-------~~~~~~~   63 (305)
T TIGR00635         2 LLAEFIGQEKVKEQLQLFIEAAKM-----------RQEALDHLLLYGPPGLGKTTLAHIIANEMGV-------NLKITSG   63 (305)
T ss_pred             CHHHHcCHHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecc
Confidence            478899999999999887654321           1345678999999999999999999998864       4444433


Q ss_pred             ccccccccCCchhHHHHHHHH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------------------
Q 013316          247 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------  307 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------------  307 (445)
                      +...      ....+...+.. ..+.+|||||||.+.+           ..++.|...|++.                  
T Consensus        64 ~~~~------~~~~l~~~l~~~~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~  126 (305)
T TIGR00635        64 PALE------KPGDLAAILTNLEEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLD  126 (305)
T ss_pred             chhc------CchhHHHHHHhcccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeec
Confidence            2221      11223333333 2568999999999976           3334455554432                  


Q ss_pred             --cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316          308 --KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  385 (445)
Q Consensus       308 --~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (445)
                        .+++|++|+....     .++++++||...+.|++|+.+++.++++..+...           ...++++++..+. .
T Consensus       127 ~~~~~li~~t~~~~~-----l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~-----------~~~~~~~al~~ia-~  189 (305)
T TIGR00635       127 LPPFTLVGATTRAGM-----LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL-----------NVEIEPEAALEIA-R  189 (305)
T ss_pred             CCCeEEEEecCCccc-----cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh-----------CCCcCHHHHHHHH-H
Confidence              2566666655432     2678999998889999999999999999877643           2356677776555 4


Q ss_pred             HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      .+      .|+.|.+.++++.+.......         +...|+.+++.+++..
T Consensus       190 ~~------~G~pR~~~~ll~~~~~~a~~~---------~~~~it~~~v~~~l~~  228 (305)
T TIGR00635       190 RS------RGTPRIANRLLRRVRDFAQVR---------GQKIINRDIALKALEM  228 (305)
T ss_pred             Hh------CCCcchHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHH
Confidence            45      455667767777653221110         1124677777766654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.82  E-value=7.5e-19  Score=168.17  Aligned_cols=206  Identities=19%  Similarity=0.250  Sum_probs=138.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++..++.+..++.....           ...++.+++|+||||||||++|+++|+.++.       .+...+.
T Consensus        23 ~~~~~vG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-------~~~~~~~   84 (328)
T PRK00080         23 SLDEFIGQEKVKENLKIFIEAAKK-----------RGEALDHVLLYGPPGLGKTTLANIIANEMGV-------NIRITSG   84 (328)
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC-------CeEEEec
Confidence            578899999999998876654321           1345679999999999999999999999875       4444443


Q ss_pred             ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------------------
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------------------  306 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------------  306 (445)
                      +.+.      ....+..++... .++||||||||.+.+           ...+.|...|++                   
T Consensus        85 ~~~~------~~~~l~~~l~~l~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~  147 (328)
T PRK00080         85 PALE------KPGDLAAILTNLEEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLD  147 (328)
T ss_pred             cccc------ChHHHHHHHHhcccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeec
Confidence            3221      223344445443 568999999999975           223334444432                   


Q ss_pred             -CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316          307 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  385 (445)
Q Consensus       307 -~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (445)
                       ..+++|++|+....     ..++|++||...+.|++|+.+++.+|++..+...           ...++++++..+. .
T Consensus       148 l~~~~li~at~~~~~-----l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~-----------~~~~~~~~~~~ia-~  210 (328)
T PRK00080        148 LPPFTLIGATTRAGL-----LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL-----------GVEIDEEGALEIA-R  210 (328)
T ss_pred             CCCceEEeecCCccc-----CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc-----------CCCcCHHHHHHHH-H
Confidence             22567777765432     2678999998899999999999999999887764           2346667766554 4


Q ss_pred             HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      .+      .|+.|.+.++++++.......         +...|+.+++..++..
T Consensus       211 ~~------~G~pR~a~~~l~~~~~~a~~~---------~~~~I~~~~v~~~l~~  249 (328)
T PRK00080        211 RS------RGTPRIANRLLRRVRDFAQVK---------GDGVITKEIADKALDM  249 (328)
T ss_pred             Hc------CCCchHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHH
Confidence            44      466777888887763322111         1124666666666654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=4.7e-20  Score=158.59  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=119.4

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHH---HhhCCCCcCCCCCCCCChHHHHHHhCCcHHH---HHHhhcCCCCCCc
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRL---LRENPSLLNERNPVMAQTPLHVSAGYNKAEI---VKSLLEWPGNDKV   76 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~l---l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~i---v~~Ll~~~~~~g~   76 (445)
                      |++++... .+.++||+||..|+.+.+..+   +...+..++..+. .|+||||+|+.+|+.++   +++|+++    |+
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~----Ga   84 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH-HGRQCTHMVAWYDRANAVMKIELLVNM----GA   84 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC-CCCcHHHHHHHhCccCHHHHHHHHHHc----CC
Confidence            44555444 578899999999999655543   4456788888887 79999999999988654   7899985    88


Q ss_pred             cccccc-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhh
Q 013316           77 ELEAQN-MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA  150 (445)
Q Consensus        77 ~v~~~d-~~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~  150 (445)
                      ++|.++ ..|.||||+|+..++.+++++|+. .|++++.+|..|+||| |+|...++.+++++|+.++++.+.++.
T Consensus        85 din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL-~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         85 DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAY-HIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            999998 589999999999999999999995 8999999999999999 888888899999999999988766553

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.81  E-value=1e-19  Score=183.81  Aligned_cols=149  Identities=26%  Similarity=0.272  Sum_probs=131.8

Q ss_pred             CCccCccCCC-C-CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            2 QKNQDRRSRS-A-KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         2 ~~~~~~~~~~-~-~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      +.|++++..+ . |.||||+||..|+.++++.|+. .|++++..+. .|+||||+|+..++.+++++|++.    |++++
T Consensus       155 ~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~----ga~in  228 (477)
T PHA02878        155 SYGADINMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDK-TNNSPLHHAVKHYNKPIVHILLEN----GASTD  228 (477)
T ss_pred             HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHHc----CCCCC
Confidence            5788888766 4 9999999999999999998775 6899999987 799999999999999999999995    89999


Q ss_pred             cccCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCccccc-CCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           80 AQNMYGETPLHMAAKN-GCNEAAKLLLAHGAFIEAKAN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~-g~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      .+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||| |.|  .+..+++++|+.+|++++..+..+.++..
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL-h~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~  305 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL-HSS--IKSERKLKLLLEYGADINSLNSYKLTPLS  305 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHH-HHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            9999999999999975 789999999999999999886 899999 666  45689999999999998888777766655


Q ss_pred             HH
Q 013316          158 KA  159 (445)
Q Consensus       158 ~a  159 (445)
                      .+
T Consensus       306 ~A  307 (477)
T PHA02878        306 SA  307 (477)
T ss_pred             HH
Confidence            44

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=99.81  E-value=1.9e-19  Score=163.36  Aligned_cols=210  Identities=16%  Similarity=0.201  Sum_probs=159.4

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|+.+++.+..++.+.+..+.+              +.-..++||.|++||||.++||+.|..+.+.    ..||..+
T Consensus       200 ~~~F~~~v~~S~~mk~~v~qA~k~--------------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~----~~pFlal  261 (511)
T COG3283         200 VSGFEQIVAVSPKMKHVVEQAQKL--------------AMLDAPLLITGETGTGKDLLAKACHLASPRH----SKPFLAL  261 (511)
T ss_pred             ccchHHHhhccHHHHHHHHHHHHh--------------hccCCCeEEecCCCchHHHHHHHHhhcCccc----CCCeeEe
Confidence            346788999998888877755544              3345689999999999999999999988773    4499999


Q ss_pred             ecccc-----cccccCCch--hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc---------
Q 013316          245 QRTDL-----VGEFVGHTG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------  308 (445)
Q Consensus       245 ~~~~l-----~~~~~g~~~--~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------  308 (445)
                      +|+.+     .+++||+.+  ......|+.|.+|.+|||||-.+++           +.|.+|++++++|.         
T Consensus       262 NCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp-----------~lQaKLLRFL~DGtFRRVGee~E  330 (511)
T COG3283         262 NCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP-----------RLQAKLLRFLNDGTFRRVGEDHE  330 (511)
T ss_pred             ecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH-----------HHHHHHHHHhcCCceeecCCcce
Confidence            99985     466888855  3445699999999999999955554           99999999998743         


Q ss_pred             ----EEEEEecCchhHHHHHhh--Ccccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          309 ----VVVIFAGYSEPMKRVIAS--NEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       309 ----~~~i~a~~~~~~~~~~~~--~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                          +.||++|..+........  ...|..|+. -.+++|++.  ..++..+.++|+.+.+...+    ..-+.++++.+
T Consensus       331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg----~p~pkl~~~~~  406 (511)
T COG3283         331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELG----VPRPKLAADLL  406 (511)
T ss_pred             EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhC----CCCCccCHHHH
Confidence                578887765544322110  133344653 345666665  68999999999998876655    34577888888


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhh
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARENLDL  413 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~  413 (445)
                      ..+..+.|      |||.|++.|++.+|+....-
T Consensus       407 ~~L~~y~W------pGNVRqL~N~iyRA~s~~Eg  434 (511)
T COG3283         407 TVLTRYAW------PGNVRQLKNAIYRALTLLEG  434 (511)
T ss_pred             HHHHHcCC------CccHHHHHHHHHHHHHHhcc
Confidence            88888888      99999999999999876553

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.81  E-value=2.1e-19  Score=188.17  Aligned_cols=205  Identities=19%  Similarity=0.223  Sum_probs=155.1

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+.+++|.++.++.+.+.+..+              +....+|+|+||+|||||++|++||..+.+.    ..+|+.++
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~--------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~----~~~~v~i~  434 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMV--------------AQSDSTVLILGETGTGKELIARAIHNLSGRN----NRRMVKMN  434 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC----CCCeEEEe
Confidence            45667999999999988876654              4567799999999999999999999987653    34999999


Q ss_pred             ccccc-----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------
Q 013316          246 RTDLV-----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------  307 (445)
Q Consensus       246 ~~~l~-----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------  307 (445)
                      |+.+.     +.+||+..       ......|+.+.+|+||||||+.+..           +.|.+|+..++++      
T Consensus       435 c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g  503 (686)
T PRK15429        435 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLG  503 (686)
T ss_pred             cccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCC
Confidence            98753     34667522       1223467889999999999988876           7888898888653      


Q ss_pred             -------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316          308 -------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS  375 (445)
Q Consensus       308 -------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~  375 (445)
                             ++.+|++++.+......  ...+.|..|+. ..|.+|++.  ++|+..++++++.+...+.+.   . ...++
T Consensus       504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~---~-~~~~s  579 (686)
T PRK15429        504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGR---N-IDSIP  579 (686)
T ss_pred             CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCC---C-CCCcC
Confidence                   35777777665543221  11233555664 568888887  689999999999887554332   1 23588


Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ++++..+..+.|      |||.|+|+++++++..
T Consensus       580 ~~al~~L~~y~W------PGNvrEL~~~i~~a~~  607 (686)
T PRK15429        580 AETLRTLSNMEW------PGNVRELENVIERAVL  607 (686)
T ss_pred             HHHHHHHHhCCC------CCcHHHHHHHHHHHHH
Confidence            899999998888      9999999999999965

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=7.3e-19  Score=172.36  Aligned_cols=211  Identities=20%  Similarity=0.282  Sum_probs=157.8

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +=.|++++|++|.+++.--++.          +.....-++|+||||+|||++||.||..+++       .|+.++...+
T Consensus       412 DHYgm~dVKeRILEfiAV~kLr----------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-------kFfRfSvGG~  474 (906)
T KOG2004|consen  412 DHYGMEDVKERILEFIAVGKLR----------GSVQGKILCFVGPPGVGKTSIAKSIARALNR-------KFFRFSVGGM  474 (906)
T ss_pred             cccchHHHHHHHHHHHHHHhhc----------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-------ceEEEecccc
Confidence            3789999999999987644322          1223345789999999999999999999999       8888876653


Q ss_pred             c------c---cccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------------
Q 013316          250 V------G---EFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------  306 (445)
Q Consensus       250 ~------~---~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------  306 (445)
                      .      +   .|+|..+.++-+.++..  .+-+++|||||++.+.-+++..       ..||..+|.            
T Consensus       475 tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLd  547 (906)
T KOG2004|consen  475 TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLD  547 (906)
T ss_pred             ccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccc
Confidence            3      2   28888999998988876  4679999999999953332221       233444432            


Q ss_pred             -----CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHH
Q 013316          307 -----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA  381 (445)
Q Consensus       307 -----~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  381 (445)
                           .++.+|++.|.-++     +.|+|++|+ .+|+++-|..+|...|.+.||-.......... .-..+++.+++..
T Consensus       548 Vp~DLSkVLFicTAN~idt-----IP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~-~e~v~is~~al~~  620 (906)
T KOG2004|consen  548 VPVDLSKVLFICTANVIDT-----IPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLK-PEQVKISDDALLA  620 (906)
T ss_pred             cccchhheEEEEecccccc-----CChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCC-HHhcCccHHHHHH
Confidence                 46788888655433     379999999 99999999999999999999876543322111 1123567889999


Q ss_pred             HHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhc
Q 013316          382 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS  416 (445)
Q Consensus       382 ~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~  416 (445)
                      ++.+|+    |..| +|-|..-+++++|+.+.++.
T Consensus       621 lI~~Yc----rEaG-VRnLqk~iekI~Rk~Al~vv  650 (906)
T KOG2004|consen  621 LIERYC----REAG-VRNLQKQIEKICRKVALKVV  650 (906)
T ss_pred             HHHHHH----HHHh-HHHHHHHHHHHHHHHHHHHH
Confidence            999998    4566 88999999999998887774

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.81  E-value=1.6e-18  Score=167.08  Aligned_cols=254  Identities=18%  Similarity=0.270  Sum_probs=161.1

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHc--CCC--C-CCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKAL--GLK--V-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL  236 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~--~~~--~-~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~  236 (445)
                      ++...|++ ++||+.+++.+...+...   ..+-..  ...  . ......++||+||||||||++|+++|+.++.    
T Consensus        70 ~i~~~L~~~ViGQe~A~~~l~~av~~h---~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~----  142 (413)
T TIGR00382        70 EIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV----  142 (413)
T ss_pred             HHHHHhcceecCHHHHHHHHHHHHHHH---HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC----
Confidence            34555655 899999998886533111   111100  000  0 0113468999999999999999999988765    


Q ss_pred             CCCCeEEeeccccc-ccccCCch-hHHHHHH-------HHccCcEEEEcCccccccCCCCCC--ch-hHHHHHHHHHhhc
Q 013316          237 PTDRVTEVQRTDLV-GEFVGHTG-PKTRRRI-------KEAEGGILFVDEAYRLIPMQKADD--KD-YGIEALEEIMSVM  304 (445)
Q Consensus       237 ~~~~~~~~~~~~l~-~~~~g~~~-~~~~~~~-------~~a~~~il~lDEid~l~~~~~~~~--~~-~~~~~~~~ll~~~  304 (445)
                         +|..++++.+. ..|+|+.. ..+...+       +.+.++||||||||++++++.+.+  .+ .+..+|+.||+.|
T Consensus       143 ---pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iL  219 (413)
T TIGR00382       143 ---PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKII  219 (413)
T ss_pred             ---CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHh
Confidence               88888888765 34888753 3334433       455678999999999998643221  12 2236888899988


Q ss_pred             cCC---------------cEEEEEecCc--------hhHH--------------------------H---------HH--
Q 013316          305 DGG---------------KVVVIFAGYS--------EPMK--------------------------R---------VI--  324 (445)
Q Consensus       305 ~~~---------------~~~~i~a~~~--------~~~~--------------------------~---------~~--  324 (445)
                      ++.               ..++|.+++-        ....                          .         +.  
T Consensus       220 eG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~  299 (413)
T TIGR00382       220 EGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKF  299 (413)
T ss_pred             hccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            531               1234444332        0000                          0         00  


Q ss_pred             hhCcccccccccceeCCCCCHHHHHHHHHHH----HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316          325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIK----MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV  400 (445)
Q Consensus       325 ~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~----l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l  400 (445)
                      ...|+|..|+|.++.|.+++.+++..|+...    +++....+...++.+  .++++++.++....+   .+..| +|-|
T Consensus       300 g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L--~~t~~a~~~Ia~~~~---~~~~G-AR~L  373 (413)
T TIGR00382       300 GLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVEL--DFEEEALKAIAKKAL---ERKTG-ARGL  373 (413)
T ss_pred             hhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEE--EECHHHHHHHHHhCC---CCCCC-chHH
Confidence            0239999999999999999999999999873    444444444445544  778889888876644   23344 8999


Q ss_pred             HHHHHHHHHhhhhhhccCCCChhhhhhccHHHHH
Q 013316          401 DPMLVNARENLDLRLSFDCLDTDELRTITLEDLE  434 (445)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  434 (445)
                      +.++++.+......+-  ..+......|+.+.+.
T Consensus       374 r~iie~~l~~~m~e~p--~~~~~~~v~i~~~~v~  405 (413)
T TIGR00382       374 RSIVEGLLLDVMFDLP--SLEDLEKVVITKETVL  405 (413)
T ss_pred             HHHHHHhhHHHHhhCC--CCCCCcEEEECHHHHc
Confidence            9999998665443331  1122233567777664

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.80  E-value=2.2e-19  Score=181.36  Aligned_cols=110  Identities=22%  Similarity=0.294  Sum_probs=70.6

Q ss_pred             CCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 013316           36 NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA  115 (445)
Q Consensus        36 ~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~  115 (445)
                      .|++++..+...|+||||+|+..|+.+++++|+++    |++++.+|..|.||||+|+..++.+++++|++.|++++.+|
T Consensus       156 ~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~----gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d  231 (477)
T PHA02878        156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSY----GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD  231 (477)
T ss_pred             cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC
Confidence            34555555542266777777777777777777763    66666666777777777777777777777777777777777


Q ss_pred             cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316          116 NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus       116 ~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~  149 (445)
                      ..|.||||+++...+..+++++|+.+|++.+.+.
T Consensus       232 ~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        232 KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             CCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            7777777333333356667777776666655443

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.80  E-value=1.2e-18  Score=184.86  Aligned_cols=173  Identities=21%  Similarity=0.258  Sum_probs=139.4

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH---cCCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM---VGILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~---~~~~~~~~~~~  243 (445)
                      .++.++|.+...+++.+++.                .....+++|+||||||||++|+.+|..+..   +..+....++.
T Consensus       177 ~~~~~igr~~ei~~~~~~L~----------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~  240 (821)
T CHL00095        177 NLDPVIGREKEIERVIQILG----------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT  240 (821)
T ss_pred             CCCCCCCcHHHHHHHHHHHc----------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence            45679999988888777532                345678999999999999999999999864   22234558899


Q ss_pred             eeccccc--ccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch
Q 013316          244 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  318 (445)
Q Consensus       244 ~~~~~l~--~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~  318 (445)
                      ++.+.+.  ..|.|+.+..+.++|+++   .++||||||||.+.+.++..+.   ..+.+.|...+.++.+.+|++||..
T Consensus       241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l~rg~l~~IgaTt~~  317 (821)
T CHL00095        241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA---IDAANILKPALARGELQCIGATTLD  317 (821)
T ss_pred             eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc---ccHHHHhHHHHhCCCcEEEEeCCHH
Confidence            9988876  458888888999999765   3579999999999986653222   2556677788899999999999999


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      ++...+..||+|.+|| ..|.++.|+.++...|++......
T Consensus       318 ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~  357 (821)
T CHL00095        318 EYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRY  357 (821)
T ss_pred             HHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHH
Confidence            9988888899999999 678999999999999998765543

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.80  E-value=1.7e-19  Score=180.73  Aligned_cols=268  Identities=16%  Similarity=0.160  Sum_probs=182.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHH
Q 013316           86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELE  165 (445)
Q Consensus        86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~  165 (445)
                      .+|+.+.+..++.+.....++.|++            +|+.++....++...+..............   ......  ..
T Consensus        73 ~~piI~lt~~~~~~~~~~a~~~Ga~------------dyl~KP~~~~~L~~~i~~~~~~~~l~~~~~---~l~~~~--~~  135 (445)
T TIGR02915        73 DTKVIVITGNDDRENAVKAIGLGAY------------DFYQKPIDPDVLKLIVDRAFHLYTLETENR---RLQSAL--GG  135 (445)
T ss_pred             CCCEEEEecCCCHHHHHHHHHCCcc------------EEEeCCCCHHHHHHHHhhhhhhhhhHHHHH---Hhhhhh--hc
Confidence            3455555556667777778888888            777777776666655532221110000000   000000  01


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+..++|.+..++.+.+.+..+              .....+++++|++||||+++|+++|..+..    ...+|+.++
T Consensus       136 ~~~~~lig~s~~~~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~----~~~~~v~v~  197 (445)
T TIGR02915       136 TALRGLITSSPGMQKICRTIEKI--------------APSDITVLLLGESGTGKEVLARALHQLSDR----KDKRFVAIN  197 (445)
T ss_pred             ccccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhCCc----CCCCeEEEE
Confidence            13445899888888877765543              345678999999999999999999988764    344899999


Q ss_pred             ccccc-----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------
Q 013316          246 RTDLV-----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------  307 (445)
Q Consensus       246 ~~~l~-----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------  307 (445)
                      |+.+.     +.+||+..       ......|+.+.+|+||||||+.+.+           ..|..|++.++++      
T Consensus       198 c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~-----------~~q~~l~~~l~~~~~~~~~  266 (445)
T TIGR02915       198 CAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL-----------NLQAKLLRFLQERVIERLG  266 (445)
T ss_pred             CCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH-----------HHHHHHHHHHhhCeEEeCC
Confidence            99853     34566422       1123457778999999999998887           7888899888753      


Q ss_pred             -------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316          308 -------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS  375 (445)
Q Consensus       308 -------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~  375 (445)
                             ++.+|++++.+....+.  ...+.|..|+. ..|.+|++.  .+|+..++++++++.....+.    -...++
T Consensus       267 ~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~----~~~~~~  342 (445)
T TIGR02915       267 GREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKR----KTKGFT  342 (445)
T ss_pred             CCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCC----CCCCCC
Confidence                   35777777666543221  12344556664 667888887  689999999999987544331    124688


Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ++++..+..+.|      |||.|+|+++++++..
T Consensus       343 ~~a~~~L~~~~w------pgNvreL~~~i~~a~~  370 (445)
T TIGR02915       343 DDALRALEAHAW------PGNVRELENKVKRAVI  370 (445)
T ss_pred             HHHHHHHHhCCC------CChHHHHHHHHHHHHH
Confidence            899999999888      9999999999999965

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.80  E-value=2.5e-19  Score=177.82  Aligned_cols=141  Identities=21%  Similarity=0.251  Sum_probs=85.7

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC---------------------------------CC
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP---------------------------------VM   47 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------------------~~   47 (445)
                      +.|++++... .|.||||+|+..|+.++++.|+. .|++++..+.                                 ..
T Consensus        23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  101 (413)
T PHA02875         23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD  101 (413)
T ss_pred             HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCC
Confidence            3455555554 46666666666666666655543 3444443322                                 14


Q ss_pred             CChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc
Q 013316           48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN  127 (445)
Q Consensus        48 g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~  127 (445)
                      |+||||+|+..|+.+++++|++.    |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||| |+|+
T Consensus       102 g~tpL~~A~~~~~~~iv~~Ll~~----gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL-~~A~  176 (413)
T PHA02875        102 GMTPLHLATILKKLDIMKLLIAR----GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL-IIAM  176 (413)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH-HHHH
Confidence            56666666666666666666663    566666666666666666666666666666666666666666666666 5555


Q ss_pred             CCCChHHHHHHHhhhhhHHhh
Q 013316          128 GPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus       128 ~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      ..++.+++++|+++|+++...
T Consensus       177 ~~g~~eiv~~Ll~~ga~~n~~  197 (413)
T PHA02875        177 AKGDIAICKMLLDSGANIDYF  197 (413)
T ss_pred             HcCCHHHHHHHHhCCCCCCcC
Confidence            566666666666666655443

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.80  E-value=1.9e-19  Score=187.40  Aligned_cols=203  Identities=16%  Similarity=0.176  Sum_probs=154.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|.++.++++.+.+..+              +....+|+|+|++||||+++|++||..+.+    ...+|+.++|
T Consensus       323 ~~~~l~g~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r----~~~pfv~vnc  384 (638)
T PRK11388        323 TFDHMPQDSPQMRRLIHFGRQA--------------AKSSFPVLLCGEEGVGKALLAQAIHNESER----AAGPYIAVNC  384 (638)
T ss_pred             cccceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCc----cCCCeEEEEC
Confidence            4778999999988888876655              456778999999999999999999998765    3349999999


Q ss_pred             ccc-----cccccCCch----hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC----------
Q 013316          247 TDL-----VGEFVGHTG----PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------  307 (445)
Q Consensus       247 ~~l-----~~~~~g~~~----~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------  307 (445)
                      +.+     .+.+||+..    ......|+.|.+|+||||||+.+..           ..|..|+..++++          
T Consensus       385 ~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~~~~~~  453 (638)
T PRK11388        385 QLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP-----------ELQSALLQVLKTGVITRLDSRRL  453 (638)
T ss_pred             CCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCce
Confidence            875     345777531    1112357788999999999988876           7888999988764          


Q ss_pred             ---cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          308 ---KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       308 ---~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                         ++.+|++++.+....+.  ...+.|..|+. ..|.+|++.  .+|+..++++++.+.....+.     ...++++++
T Consensus       454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~-----~~~~s~~a~  528 (638)
T PRK11388        454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFST-----RLKIDDDAL  528 (638)
T ss_pred             EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCC-----CCCcCHHHH
Confidence               35677777766543221  11344556774 678889888  479999999999886543321     236888999


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ..+..+.|      |||.|+|+++++++..
T Consensus       529 ~~L~~y~W------PGNvreL~~~l~~~~~  552 (638)
T PRK11388        529 ARLVSYRW------PGNDFELRSVIENLAL  552 (638)
T ss_pred             HHHHcCCC------CChHHHHHHHHHHHHH
Confidence            99998888      9999999999999864

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.2e-18  Score=153.26  Aligned_cols=230  Identities=17%  Similarity=0.338  Sum_probs=157.3

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCC---CCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGL---KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT  238 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~  238 (445)
                      ++...+++ ++||+.+|+.|.=    ..++.+.+-...   ..-.-...++|+.||+|+|||.+|+.+|+.++.      
T Consensus        54 eik~~Ld~YVIGQe~AKKvLsV----AVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV------  123 (408)
T COG1219          54 EIKAHLDEYVIGQEQAKKVLSV----AVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV------  123 (408)
T ss_pred             HHHHHhhhheecchhhhceeee----eehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC------
Confidence            34445555 8999999876652    122222211111   101123468999999999999999999999988      


Q ss_pred             CCeEEeeccccc-ccccCCchhHH-HHHHH-------HccCcEEEEcCccccccCCCCCC--ch-hHHHHHHHHHhhccC
Q 013316          239 DRVTEVQRTDLV-GEFVGHTGPKT-RRRIK-------EAEGGILFVDEAYRLIPMQKADD--KD-YGIEALEEIMSVMDG  306 (445)
Q Consensus       239 ~~~~~~~~~~l~-~~~~g~~~~~~-~~~~~-------~a~~~il~lDEid~l~~~~~~~~--~~-~~~~~~~~ll~~~~~  306 (445)
                       ||.-.+++.|. ..|+|+.-.++ .+++.       .|+.||+||||||+++.+..+.+  .+ .+.-+|..||+.+++
T Consensus       124 -PFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG  202 (408)
T COG1219         124 -PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG  202 (408)
T ss_pred             -CeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence             89888888885 44999876654 45554       34669999999999997664322  22 334678889999985


Q ss_pred             -----------------------CcEEEEEecCchhHHHHHhhC------------------------------------
Q 013316          307 -----------------------GKVVVIFAGYSEPMKRVIASN------------------------------------  327 (445)
Q Consensus       307 -----------------------~~~~~i~a~~~~~~~~~~~~~------------------------------------  327 (445)
                                             .++.+|+.+.-..++.++...                                    
T Consensus       203 TvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkF  282 (408)
T COG1219         203 TVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKF  282 (408)
T ss_pred             ceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHc
Confidence                                   135777766544444433222                                    


Q ss_pred             ---cccccccccceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316          328 ---EGFCRRVTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV  400 (445)
Q Consensus       328 ---~~l~~R~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l  400 (445)
                         |.|..|++.+-.+..++.+++..||.    ..++++..-+...++.+  .++.+++.+......   .|..| +|-|
T Consensus       283 GLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L--~F~~~AL~~IA~~A~---~rkTG-ARGL  356 (408)
T COG1219         283 GLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVEL--EFTEEALKAIAKKAI---ERKTG-ARGL  356 (408)
T ss_pred             CCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceE--EEcHHHHHHHHHHHH---Hhccc-hhHH
Confidence               88999999999999999999999984    34444443344444444  678889887765554   34455 8999


Q ss_pred             HHHHHHHHH
Q 013316          401 DPMLVNARE  409 (445)
Q Consensus       401 ~~~~~~~~~  409 (445)
                      |.++|..+-
T Consensus       357 RsI~E~~ll  365 (408)
T COG1219         357 RSIIEELLL  365 (408)
T ss_pred             HHHHHHHHH
Confidence            999998844

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=1.7e-19  Score=167.91  Aligned_cols=126  Identities=31%  Similarity=0.400  Sum_probs=79.6

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.+||..|+..||+++|+.|++ ++++||..+. ...|||..||.-||.++|++|+++    |+|+++.|..|.|.||+
T Consensus        83 egappLWaAsaAGHl~vVk~L~~-~ga~VN~tT~-TNStPLraACfDG~leivKyLvE~----gad~~IanrhGhTcLmI  156 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLR-RGASVNDTTR-TNSTPLRAACFDGHLEIVKYLVEH----GADPEIANRHGHTCLMI  156 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHH-hcCccccccc-cCCccHHHHHhcchhHHHHHHHHc----CCCCcccccCCCeeEEe
Confidence            46666666666666666665554 3466665554 345666666666666666666663    66666666666666666


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      ||..|+.+++++|++.|||+|.++..|+|+| |.+...++.+++++|+++++.
T Consensus       157 a~ykGh~~I~qyLle~gADvn~ks~kGNTAL-H~caEsG~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  157 ACYKGHVDIAQYLLEQGADVNAKSYKGNTAL-HDCAESGSVDIVQLLLKHGAK  208 (615)
T ss_pred             eeccCchHHHHHHHHhCCCcchhcccCchHH-HhhhhcccHHHHHHHHhCCce
Confidence            6666666666666666666666666666666 555556666666666665543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.80  E-value=2.6e-18  Score=180.37  Aligned_cols=218  Identities=22%  Similarity=0.299  Sum_probs=154.7

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  241 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~  241 (445)
                      .+...+.+ ++||+.+++.+.+.+..       ...+......+..+++|+||||||||++|+++|+.++.       ++
T Consensus       447 ~l~~~l~~~v~GQ~~ai~~l~~~i~~-------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-------~~  512 (731)
T TIGR02639       447 NLEKNLKAKIFGQDEAIDSLVSSIKR-------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-------HL  512 (731)
T ss_pred             HHHHHHhcceeCcHHHHHHHHHHHHH-------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-------Ce
Confidence            34445544 99999998888875542       23333322334456899999999999999999999865       78


Q ss_pred             EEeecccccc---------c---ccCC-chhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc
Q 013316          242 TEVQRTDLVG---------E---FVGH-TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK  308 (445)
Q Consensus       242 ~~~~~~~l~~---------~---~~g~-~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~  308 (445)
                      +.++++.+..         .   |+|. ....+.+.++...++||||||||++++           ++++.|++.|+++.
T Consensus       513 ~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g~  581 (731)
T TIGR02639       513 ERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYAT  581 (731)
T ss_pred             EEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccCe
Confidence            8888776432         2   3343 233466777777889999999999987           88999999998752


Q ss_pred             -------------EEEEEecCchhHH-------------------HH-HhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316          309 -------------VVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK  355 (445)
Q Consensus       309 -------------~~~i~a~~~~~~~-------------------~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~  355 (445)
                                   .++|++++.....                   .+ -...|+|+.|||.++.|.+++.+++.+|++..
T Consensus       582 ~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~  661 (731)
T TIGR02639       582 LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKF  661 (731)
T ss_pred             eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHH
Confidence                         3466665432100                   00 01258899999999999999999999999999


Q ss_pred             HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316          356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  411 (445)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~  411 (445)
                      +.+....+...++.+  .++++++.++....+.   + ...+|.++..+++.+...
T Consensus       662 L~~l~~~l~~~~~~l--~i~~~a~~~La~~~~~---~-~~GaR~l~r~i~~~~~~~  711 (731)
T TIGR02639       662 VDELSKQLNEKNIKL--ELTDDAKKYLAEKGYD---E-EFGARPLARVIQEEIKKP  711 (731)
T ss_pred             HHHHHHHHHhCCCeE--EeCHHHHHHHHHhCCC---c-ccCchHHHHHHHHHhHHH
Confidence            988766665444444  6778888877765432   2 234888888888775543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.80  E-value=5e-19  Score=176.61  Aligned_cols=121  Identities=29%  Similarity=0.348  Sum_probs=103.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+||..|+.++++.|+. .|++++..+. .|.||||+|+..|+.+++++|++.    |++++.
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~----g~~~n~  185 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDD-NGCYPIHIAIKHNFFDIIKLLLEK----GAYANV  185 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCC-CCCCHHHHHHHCCcHHHHHHHHHC----CCCCCC
Confidence            4567777766 69999999999999999987775 6889999987 799999999999999999999995    788999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCC
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP  129 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~  129 (445)
                      .+..|.||||+|+..|+.+++++|++.|++++.++..|.||| |.|...
T Consensus       186 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL-~~A~~~  233 (434)
T PHA02874        186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPL-HNAIIH  233 (434)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHH-HHHHHC
Confidence            999999999999999999999999999988777766666666 444433

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.2e-18  Score=169.99  Aligned_cols=235  Identities=17%  Similarity=0.244  Sum_probs=167.4

Q ss_pred             HHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          165 ENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       165 ~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ...|+ +=.|.+.+|++|.+++.-.+..          .....+-++|+||||+|||++++.||+.+++       .|+.
T Consensus       318 ~~iLd~dHYGLekVKeRIlEyLAV~~l~----------~~~kGpILcLVGPPGVGKTSLgkSIA~al~R-------kfvR  380 (782)
T COG0466         318 EKILDKDHYGLEKVKERILEYLAVQKLT----------KKLKGPILCLVGPPGVGKTSLGKSIAKALGR-------KFVR  380 (782)
T ss_pred             HHHhcccccCchhHHHHHHHHHHHHHHh----------ccCCCcEEEEECCCCCCchhHHHHHHHHhCC-------CEEE
Confidence            33343 3789999999999976543321          1112245779999999999999999999999       9999


Q ss_pred             eecccccc---------cccCCchhHHHHHHHHcc--CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------
Q 013316          244 VQRTDLVG---------EFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------  306 (445)
Q Consensus       244 ~~~~~l~~---------~~~g~~~~~~~~~~~~a~--~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------  306 (445)
                      ++...+..         .|+|..+.++-+.+.++.  +-+++|||||++.++-+++..       +.||..+|.      
T Consensus       381 ~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F  453 (782)
T COG0466         381 ISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTF  453 (782)
T ss_pred             EecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChH-------HHHHhhcCHhhcCch
Confidence            88776432         288888888888888774  589999999999875443222       345555542      


Q ss_pred             -----------CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccccccccccc-ccCCcc
Q 013316          307 -----------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSC  374 (445)
Q Consensus       307 -----------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~  374 (445)
                                 .++.+|++.|.-..     +..+|++|+ .+|+++.|+.+|..+|.+.||-......  .++ .-.-.+
T Consensus       454 ~DhYLev~yDLS~VmFiaTANsl~t-----IP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~--~gL~~~el~i  525 (782)
T COG0466         454 SDHYLEVPYDLSKVMFIATANSLDT-----IPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKE--HGLKKGELTI  525 (782)
T ss_pred             hhccccCccchhheEEEeecCcccc-----CChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHH--cCCCccceee
Confidence                       45777777554322     367899999 9999999999999999998876443221  111 113467


Q ss_pred             cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      +++++..++.+|+    |..| +|.|+..+...+|.....+......  ....|+..++.+.+.
T Consensus       526 ~d~ai~~iI~~YT----REAG-VR~LeR~i~ki~RK~~~~i~~~~~k--~~~~i~~~~l~~yLG  582 (782)
T COG0466         526 TDEAIKDIIRYYT----REAG-VRNLEREIAKICRKAAKKILLKKEK--SIVKIDEKNLKKYLG  582 (782)
T ss_pred             cHHHHHHHHHHHh----Hhhh-hhHHHHHHHHHHHHHHHHHHhcCcc--cceeeCHHHHHHHhC
Confidence            8889999998887    5567 8889999999888877766432211  114688888877664

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.79  E-value=2.6e-18  Score=179.42  Aligned_cols=237  Identities=15%  Similarity=0.196  Sum_probs=166.2

Q ss_pred             HHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316          162 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  240 (445)
Q Consensus       162 ~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~  240 (445)
                      .+....|+. ..|++.+|+++.+++......          .......++|+||||||||++|+.+++.++.       +
T Consensus       314 ~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~----------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~-------~  376 (784)
T PRK10787        314 RQAQEILDTDHYGLERVKDRILEYLAVQSRV----------NKIKGPILCLVGPPGVGKTSLGQSIAKATGR-------K  376 (784)
T ss_pred             HHHHHHhhhhccCHHHHHHHHHHHHHHHHhc----------ccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence            344555665 999999999999876533211          1123447999999999999999999999876       7


Q ss_pred             eEEeeccccc---------ccccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC---
Q 013316          241 VTEVQRTDLV---------GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---  306 (445)
Q Consensus       241 ~~~~~~~~l~---------~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---  306 (445)
                      |+.++.+...         ..|.|.....+...+..+  .+.|+||||||++.+..+.       +.++.|+..+|.   
T Consensus       377 ~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g-------~~~~aLlevld~~~~  449 (784)
T PRK10787        377 YVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRG-------DPASALLEVLDPEQN  449 (784)
T ss_pred             EEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCC-------CHHHHHHHHhccccE
Confidence            7777766532         136666666666666654  3579999999999875432       234566666653   


Q ss_pred             --------------CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHh-cccccccccccccC
Q 013316          307 --------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN-NQTEDSLLYGFKLH  371 (445)
Q Consensus       307 --------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~-~~~~~~~~~~~~~~  371 (445)
                                    +++++|++++..      .++|+|++|| ..|.|+.|+.+|..+|++.++. +...+.+..+  ..
T Consensus       450 ~~~~d~~~~~~~dls~v~~i~TaN~~------~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~--~~  520 (784)
T PRK10787        450 VAFSDHYLEVDYDLSDVMFVATSNSM------NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKK--GE  520 (784)
T ss_pred             EEEecccccccccCCceEEEEcCCCC------CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCC--Ce
Confidence                          567777765432      2489999999 6899999999999999999995 2222222221  23


Q ss_pred             CcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          372 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       372 ~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      ..++.+++.+++..|.    +..| +|.++..+++.++....+.....  ......|+.+++.+.+.
T Consensus       521 l~i~~~ai~~ii~~yt----~e~G-aR~LeR~I~~i~r~~l~~~~~~~--~~~~v~v~~~~~~~~lg  580 (784)
T PRK10787        521 LTVDDSAIIGIIRYYT----REAG-VRSLEREISKLCRKAVKQLLLDK--SLKHIEINGDNLHDYLG  580 (784)
T ss_pred             EEECHHHHHHHHHhCC----cccC-CcHHHHHHHHHHHHHHHHHHhcC--CCceeeecHHHHHHHhC
Confidence            4677888888876443    5566 99999999999887776653221  11335789999887765

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.79  E-value=4.3e-18  Score=165.46  Aligned_cols=187  Identities=16%  Similarity=0.168  Sum_probs=131.8

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.+...|..++..               ...+..+||+||||||||++|+.+|+.+.+.....        
T Consensus        15 ~~f~dvVGQe~iv~~L~~~i~~---------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~   79 (484)
T PRK14956         15 QFFRDVIHQDLAIGALQNALKS---------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT   79 (484)
T ss_pred             CCHHHHhChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence            4688899999999988876542               12334589999999999999999999987632110        


Q ss_pred             ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                               ...|++++++.-      .....++++.+..       ++.|+||||+|.+..           .+++.||
T Consensus        80 sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NALL  142 (484)
T PRK14956         80 SCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNALL  142 (484)
T ss_pred             HHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHHH
Confidence                     112333333211      0123344443322       346999999999976           7889999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  ..+++|++|+...  .   +.+++++|| ..+.|.+++.+++.+.+++.+.+..           ..++++++
T Consensus       143 KtLEEPp~~viFILaTte~~--k---I~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Eg-----------i~~e~eAL  205 (484)
T PRK14956        143 KTLEEPPAHIVFILATTEFH--K---IPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIEN-----------VQYDQEGL  205 (484)
T ss_pred             HHhhcCCCceEEEeecCChh--h---ccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99997  7788888877632  2   278899999 8899999999999999998887641           24566776


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      . ++...+.      |+.|.+-+++++++
T Consensus       206 ~-~Ia~~S~------Gd~RdAL~lLeq~i  227 (484)
T PRK14956        206 F-WIAKKGD------GSVRDMLSFMEQAI  227 (484)
T ss_pred             H-HHHHHcC------ChHHHHHHHHHHHH
Confidence            6 6667774      45555666777763

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.79  E-value=5.2e-19  Score=176.48  Aligned_cols=132  Identities=20%  Similarity=0.265  Sum_probs=66.9

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC-------------------
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG-------------------   72 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~-------------------   72 (445)
                      .|.||||.|+..|+.++++.|+. .|+++|..+. .|.||||+|+..|+.+++++|++.+.                   
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~-~Ga~~n~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll  111 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIK-HGADINHINT-KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL  111 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence            34555555555555555554442 3455554443 35555555555555555555544321                   


Q ss_pred             CCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316           73 NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  146 (445)
Q Consensus        73 ~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~  146 (445)
                      ..|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||| |+|+..++.+++++|++++++..
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpL-h~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI-HIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHCCcHHHHHHHHHCCCCCC
Confidence            12445555555555555555555555555555555555555555555555 44444445555555555554433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.1e-18  Score=141.93  Aligned_cols=118  Identities=36%  Similarity=0.367  Sum_probs=106.4

Q ss_pred             hHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcC
Q 013316           17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG   96 (445)
Q Consensus        17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g   96 (445)
                      +.+|+..|.+..|+.||...+..+|.+|. +|.||||.|+.+||.+||+.|+..    |++.+.+...|+||||-||..+
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~----gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLS----GANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHc----cCCcccccccCccchhhhhccc
Confidence            67999999999999999999999999997 899999999999999999999884    8999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHH
Q 013316           97 CNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL  139 (445)
Q Consensus        97 ~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll  139 (445)
                      +.+++.+|+.+|+|+|+......||||.++...+....+.+|+
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence            9999999999999999999999999955555455555555554

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.78  E-value=6.9e-18  Score=179.66  Aligned_cols=220  Identities=20%  Similarity=0.305  Sum_probs=158.5

Q ss_pred             HHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316          164 LENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  242 (445)
Q Consensus       164 ~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~  242 (445)
                      ++..+. .++|++.++..+.+.+...       ..++.....+...++|+||||||||++|++||+.+...    ..+++
T Consensus       559 l~~~l~~~v~GQ~~av~~v~~~i~~~-------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~----~~~~i  627 (852)
T TIGR03346       559 MEEVLHERVVGQDEAVEAVSDAIRRS-------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD----EDAMV  627 (852)
T ss_pred             HHHHhhcccCCChHHHHHHHHHHHHH-------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC----CCcEE
Confidence            344443 4999999999988865533       22232223345579999999999999999999988642    23788


Q ss_pred             Eeecccccc-----c-------ccCCc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-
Q 013316          243 EVQRTDLVG-----E-------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-  308 (445)
Q Consensus       243 ~~~~~~l~~-----~-------~~g~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-  308 (445)
                      .++++.+..     .       |+|+. ...+...+....++|||||||+++.+           ++++.|++.++++. 
T Consensus       628 ~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-----------~v~~~Ll~~l~~g~l  696 (852)
T TIGR03346       628 RIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-----------DVFNVLLQVLDDGRL  696 (852)
T ss_pred             EEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-----------HHHHHHHHHHhcCce
Confidence            888876432     1       34543 34556666667789999999999987           88999999997642 


Q ss_pred             ------------EEEEEecCchhH--HH------------------HHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316          309 ------------VVVIFAGYSEPM--KR------------------VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       309 ------------~~~i~a~~~~~~--~~------------------~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l  356 (445)
                                  .++|++++....  ..                  --.-.|.|..|++.++.|.+++.+++.+|+...+
T Consensus       697 ~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L  776 (852)
T TIGR03346       697 TDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQL  776 (852)
T ss_pred             ecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHH
Confidence                        346666654211  00                  0012488999999999999999999999999999


Q ss_pred             hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316          357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  411 (445)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~  411 (445)
                      ......+...++  ...++++++..+..+.|.    .++|+|.|++++++.+...
T Consensus       777 ~~l~~~l~~~~~--~l~i~~~a~~~L~~~~~~----~~~gaR~L~~~i~~~i~~~  825 (852)
T TIGR03346       777 GRLRKRLAERKI--TLELSDAALDFLAEAGYD----PVYGARPLKRAIQREIENP  825 (852)
T ss_pred             HHHHHHHHHCCC--eecCCHHHHHHHHHhCCC----CCCCchhHHHHHHHHHHHH
Confidence            876555444433  357889999988877663    3689999999999887543

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1e-18  Score=173.51  Aligned_cols=136  Identities=24%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC---------
Q 013316           13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM---------   83 (445)
Q Consensus        13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~---------   83 (445)
                      +.++||.|+..|+.++++.|+. .|+++|..+. .|.||||+|+..|+.+++++|+++    |++++..+.         
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~-~g~~~n~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~~~t~L~~A   75 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLD-IGINPNFEIY-DGISPIKLAMKFRDSEAIKLLMKH----GAIPDVKYPDIESELHDA   75 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHH-CCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHhC----CCCccccCCCcccHHHHH
Confidence            4689999999999999998885 6899999886 799999999999999999999996    555554433         


Q ss_pred             -------------------------CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316           84 -------------------------YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL  138 (445)
Q Consensus        84 -------------------------~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l  138 (445)
                                               .|.||||+|+..|+.+++++|+++|++++.++..|.||| |+|+..++.+++++|
T Consensus        76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpL-h~A~~~~~~~~v~~L  154 (413)
T PHA02875         76 VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIKGIELL  154 (413)
T ss_pred             HHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHH
Confidence                                     455666666666666666666666666666666666666 555555556666666


Q ss_pred             HhhhhhHHhhhhhhhhh
Q 013316          139 LWHSEEQRKRRALEACS  155 (445)
Q Consensus       139 l~~~~~~~~~~~~~~~~  155 (445)
                      ++++++...++..+.++
T Consensus       155 l~~g~~~~~~d~~g~Tp  171 (413)
T PHA02875        155 IDHKACLDIEDCCGCTP  171 (413)
T ss_pred             HhcCCCCCCCCCCCCCH
Confidence            66655544444333333

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=99.78  E-value=3e-18  Score=153.07  Aligned_cols=183  Identities=22%  Similarity=0.275  Sum_probs=129.0

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+++++||+.+++.|...+.                ....+++|||||||||||+.|+++|.++..+.. ....+.+.+
T Consensus        33 kt~de~~gQe~vV~~L~~a~~----------------~~~lp~~LFyGPpGTGKTStalafar~L~~~~~-~~~rvl~ln   95 (346)
T KOG0989|consen   33 KTFDELAGQEHVVQVLKNALL----------------RRILPHYLFYGPPGTGKTSTALAFARALNCEQL-FPCRVLELN   95 (346)
T ss_pred             CcHHhhcchHHHHHHHHHHHh----------------hcCCceEEeeCCCCCcHhHHHHHHHHHhcCccc-cccchhhhc
Confidence            467889999999998887543                234579999999999999999999999987333 233455667


Q ss_pred             cccccccccCCch-hHHHHHHHHc---------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEE
Q 013316          246 RTDLVGEFVGHTG-PKTRRRIKEA---------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF  313 (445)
Q Consensus       246 ~~~l~~~~~g~~~-~~~~~~~~~a---------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~  313 (445)
                      .|+..|.-++... +...++....         ...|++|||.|.+..           +++..|.+.||+  ...++|+
T Consensus        96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~~trFiL  164 (346)
T KOG0989|consen   96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSRTTRFIL  164 (346)
T ss_pred             ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhccccceEEEE
Confidence            7776555443221 1111111111         127999999988886           889999999987  3344444


Q ss_pred             ecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      -++.  ..++   -+++.+|+ .++.|+++..+++...|+....++           ..+++++++. ++...++||+|.
T Consensus       165 Icny--lsri---i~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E-----------~v~~d~~al~-~I~~~S~GdLR~  226 (346)
T KOG0989|consen  165 ICNY--LSRI---IRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKE-----------GVDIDDDALK-LIAKISDGDLRR  226 (346)
T ss_pred             EcCC--hhhC---ChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHh-----------CCCCCHHHHH-HHHHHcCCcHHH
Confidence            4332  1222   46688998 999999999999999999888875           2356777776 677888666654


Q ss_pred             c
Q 013316          394 E  394 (445)
Q Consensus       394 ~  394 (445)
                      +
T Consensus       227 A  227 (346)
T KOG0989|consen  227 A  227 (346)
T ss_pred             H
Confidence            3

>PRK15115 response regulator GlrR; Provisional

Probab=99.78  E-value=3.1e-19  Score=178.71  Aligned_cols=258  Identities=19%  Similarity=0.202  Sum_probs=168.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHH
Q 013316           87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELEN  166 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~  166 (445)
                      +|+.+.+..+..+.....+..|+.            +++.++....++...+.........    .    .   .   ..
T Consensus        78 ~pvIvlt~~~~~~~~~~a~~~Ga~------------~~l~KP~~~~~L~~~l~~~~~~~~~----~----~---~---~~  131 (444)
T PRK15115         78 MPVIILTAHGSIPDAVAATQQGVF------------SFLTKPVDRDALYKAIDDALEQSAP----A----T---D---ER  131 (444)
T ss_pred             CcEEEEECCCCHHHHHHHHhcChh------------hhccCCCCHHHHHHHHHHHHHhhhc----c----c---c---cc
Confidence            344443444555556666677766            5666666655555554322111000    0    0   0   00


Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .-..++|.+.....+.+....+              .....+++++|++|||||++|+++|+...+.    ..+|+.++|
T Consensus       132 ~~~~lig~s~~~~~~~~~~~~~--------------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~----~~~f~~i~c  193 (444)
T PRK15115        132 WREAIVTRSPLMLRLLEQARMV--------------AQSDVSVLINGQSGTGKEILAQAIHNASPRA----SKPFIAINC  193 (444)
T ss_pred             hhhcccccCHHHHHHHHHHHhh--------------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCC----CCCeEEEeC
Confidence            0124788887766665544332              3445689999999999999999999987653    349999999


Q ss_pred             cccc-----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316          247 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  307 (445)
Q Consensus       247 ~~l~-----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  307 (445)
                      +.+.     +.+||+...       .....++.+.+|+|||||||.+.+           ..|..|+..++.+       
T Consensus       194 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~g~  262 (444)
T PRK15115        194 GALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA-----------PLQVKLLRVLQERKVRPLGS  262 (444)
T ss_pred             CCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH-----------HHHHHHHHHHhhCCEEeCCC
Confidence            8753     335554221       112357778889999999999987           7788898888764       


Q ss_pred             ------cEEEEEecCchhHHHHHh--hCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316          308 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  376 (445)
Q Consensus       308 ------~~~~i~a~~~~~~~~~~~--~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~  376 (445)
                            ++.+|++++.+....+..  ..+.|..|+. ..|.+|++.  .+|+..++++++++.....+    +....+++
T Consensus       263 ~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~----~~~~~~~~  338 (444)
T PRK15115        263 NRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHK----PFVRAFST  338 (444)
T ss_pred             CceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhC----CCCCCcCH
Confidence                  346777766554332211  1244555663 566777776  57899999999988654322    11235789


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      +++..+..+.|      |||.|+|+++++++..
T Consensus       339 ~a~~~L~~~~W------pgNvreL~~~i~~~~~  365 (444)
T PRK15115        339 DAMKRLMTASW------PGNVRQLVNVIEQCVA  365 (444)
T ss_pred             HHHHHHHhCCC------CChHHHHHHHHHHHHH
Confidence            99999999988      9999999999999865

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.78  E-value=2.6e-19  Score=180.05  Aligned_cols=269  Identities=15%  Similarity=0.147  Sum_probs=175.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHH
Q 013316           86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELE  165 (445)
Q Consensus        86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~  165 (445)
                      .+|+.+.+.....+.....++.|++            +++.++....++...+..............   ....... ..
T Consensus        76 ~~pvI~lt~~~~~~~~~~a~~~Ga~------------d~l~KP~~~~~L~~~i~~~l~~~~l~~~~~---~l~~~l~-~~  139 (457)
T PRK11361         76 RTPVILMTAYAEVETAVEALRCGAF------------DYVIKPFDLDELNLIVQRALQLQSMKKEIR---HLHQALS-TS  139 (457)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHCCcc------------EEEecccCHHHHHHHHhhhccccccchhhh---hhhhhhh-cc
Confidence            3444444455666777777788877            666666555555544432211110000000   0000000 01


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+..++|.+.....+.+.+..+              +....+++++|++||||+++|+++|..+..    ..++|+.++
T Consensus       140 ~~~~~ii~~S~~~~~~~~~~~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~----~~~~~~~i~  201 (457)
T PRK11361        140 WQWGHILTNSPAMMDICKDTAKI--------------ALSQASVLISGESGTGKELIARAIHYNSRR----AKGPFIKVN  201 (457)
T ss_pred             ccccceecccHHHhHHHHHHHHH--------------cCCCcEEEEEcCCCccHHHHHHHHHHhCCC----CCCCeEEEE
Confidence            12345888888877777655444              345678999999999999999999987654    345999999


Q ss_pred             ccccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----
Q 013316          246 RTDLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-----  308 (445)
Q Consensus       246 ~~~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-----  308 (445)
                      |+.+.     +.+||+....       ....+..+.+|+||||||+.+.+           ..|..|+..++.+.     
T Consensus       202 c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~-----------~~q~~L~~~l~~~~~~~~~  270 (457)
T PRK11361        202 CAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL-----------VLQAKLLRILQEREFERIG  270 (457)
T ss_pred             CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH-----------HHHHHHHHHHhcCcEEeCC
Confidence            98763     3456653211       12357778899999999999887           77888888887532     


Q ss_pred             --------EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316          309 --------VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS  375 (445)
Q Consensus       309 --------~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~  375 (445)
                              +.+|++++.+......  ...+.|..|+. ..|.+|++.  .+|+..++++++.+.....+    .-...++
T Consensus       271 ~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~----~~~~~~~  346 (457)
T PRK11361        271 GHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQ----RDIIDID  346 (457)
T ss_pred             CCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcC----CCCCCcC
Confidence                    5777777655433211  11344555663 667788877  68899999999998754322    1124678


Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ++++..+..+.|      |||.|+|+++++++..
T Consensus       347 ~~a~~~L~~~~w------pgNv~eL~~~~~~~~~  374 (457)
T PRK11361        347 PMAMSLLTAWSW------PGNIRELSNVIERAVV  374 (457)
T ss_pred             HHHHHHHHcCCC------CCcHHHHHHHHHHHHH
Confidence            899999998888      9999999999999864

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=99.78  E-value=3.6e-19  Score=179.30  Aligned_cols=202  Identities=18%  Similarity=0.212  Sum_probs=149.7

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      .++|.++...++.+.+...              .....++++.|++||||+++|+++|.....    ...+|+.++|+.+
T Consensus       135 ~lig~s~~~~~v~~~i~~~--------------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~----~~~~~~~~~c~~~  196 (463)
T TIGR01818       135 ELIGEAPAMQEVFRAIGRL--------------SRSDITVLINGESGTGKELVARALHRHSPR----ANGPFIALNMAAI  196 (463)
T ss_pred             ceeecCHHHHHHHHHHHHH--------------hCcCCeEEEECCCCCCHHHHHHHHHHhCCC----CCCCeEEEeCCCC
Confidence            4889888888877755443              345668999999999999999999987654    3449999999875


Q ss_pred             c-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC----------
Q 013316          250 V-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------  307 (445)
Q Consensus       250 ~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------  307 (445)
                      .     +.+||+....       ....+..+.+|+||||||+.+..           ..+..|+..++.+          
T Consensus       197 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~-----------~~q~~ll~~l~~~~~~~~~~~~~  265 (463)
T TIGR01818       197 PKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL-----------DAQTRLLRVLADGEFYRVGGRTP  265 (463)
T ss_pred             CHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH-----------HHHHHHHHHHhcCcEEECCCCce
Confidence            3     3456653211       12346677899999999988876           7788888888754          


Q ss_pred             ---cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          308 ---KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       308 ---~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                         .+.+|++++.+......  ...+.|..|+. ..|++|++.  .+|+..++++++.+.....+.    -...++++++
T Consensus       266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~----~~~~~~~~a~  341 (463)
T TIGR01818       266 IKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDV----EPKLLDPEAL  341 (463)
T ss_pred             eeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCC----CCCCcCHHHH
Confidence               34677777665443221  11245666775 588999998  899999999999887543321    1246889999


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      ..+..+.|      |||.|+|+++++++...
T Consensus       342 ~~L~~~~w------pgNvreL~~~~~~~~~~  366 (463)
T TIGR01818       342 ERLKQLRW------PGNVRQLENLCRWLTVM  366 (463)
T ss_pred             HHHHhCCC------CChHHHHHHHHHHHHHh
Confidence            99998888      99999999999998653

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.78  E-value=1.1e-17  Score=168.39  Aligned_cols=188  Identities=15%  Similarity=0.202  Sum_probs=132.1

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------  239 (445)
                      +.|++++|++.+++.|++++..               ...+..+||+||+|||||++|+.+++.+.+.......      
T Consensus        13 qtFdEVIGQe~Vv~~L~~aL~~---------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~   77 (830)
T PRK07003         13 KDFASLVGQEHVVRALTHALDG---------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR   77 (830)
T ss_pred             CcHHHHcCcHHHHHHHHHHHhc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence            4688999999999999886541               1234456999999999999999999999763211111      


Q ss_pred             -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                 .+++++.++-      ..-..++.+++.+       ++.|+||||+|.|..           ..++.||
T Consensus        78 sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALL  140 (830)
T PRK07003         78 ACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAML  140 (830)
T ss_pred             HHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHH
Confidence                       1333333211      1233456666543       458999999999976           6789999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  ..+.+|++|+....  +   .+.+++|| ..+.|..++.+++.+.|+..+.+..           ..++.+++
T Consensus       141 KtLEEPP~~v~FILaTtd~~K--I---p~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg-----------I~id~eAL  203 (830)
T PRK07003        141 KTLEEPPPHVKFILATTDPQK--I---PVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER-----------IAFEPQAL  203 (830)
T ss_pred             HHHHhcCCCeEEEEEECChhh--c---cchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  46777777665332  2   57899999 9999999999999999999887641           24566676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      . ++.+.+      .|+.|...+++++++.
T Consensus       204 ~-lIA~~A------~GsmRdALsLLdQAia  226 (830)
T PRK07003        204 R-LLARAA------QGSMRDALSLTDQAIA  226 (830)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence            6 555666      4455566667776643

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.78  E-value=4.4e-18  Score=174.18  Aligned_cols=222  Identities=21%  Similarity=0.267  Sum_probs=146.9

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---CCCCeE
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVT  242 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---~~~~~~  242 (445)
                      ..|++++|++..+..+.+.+.                ...+.+++|+||||||||++|+.++.........   ...+|+
T Consensus       151 ~~~~~iiGqs~~~~~l~~~ia----------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv  214 (615)
T TIGR02903       151 RAFSEIVGQERAIKALLAKVA----------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV  214 (615)
T ss_pred             CcHHhceeCcHHHHHHHHHHh----------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence            467889999998887654321                2346689999999999999999999887542211   245899


Q ss_pred             Eeeccccc-------ccccCCchhH-----------------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHH
Q 013316          243 EVQRTDLV-------GEFVGHTGPK-----------------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALE  298 (445)
Q Consensus       243 ~~~~~~l~-------~~~~g~~~~~-----------------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~  298 (445)
                      .++++.+.       ..++|.....                 ....+..+.+|+|||||++.+.+           ..+.
T Consensus       215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-----------~~Q~  283 (615)
T TIGR02903       215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-----------LLQN  283 (615)
T ss_pred             EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-----------HHHH
Confidence            99987642       1233321110                 11234566789999999988876           5666


Q ss_pred             HHHhhccCC------------------------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHH
Q 013316          299 EIMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL  348 (445)
Q Consensus       299 ~ll~~~~~~------------------------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~  348 (445)
                      .|+..++++                              .+++|++|++++..    .+|+|++|| ..+.|++++.+|+
T Consensus       284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~----l~~aLrSR~-~~i~~~pls~edi  358 (615)
T TIGR02903       284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEE----INPALRSRC-AEVFFEPLTPEDI  358 (615)
T ss_pred             HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccc----cCHHHHhce-eEEEeCCCCHHHH
Confidence            777777543                              25777777665432    378999999 5789999999999


Q ss_pred             HHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhc
Q 013316          349 AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI  428 (445)
Q Consensus       349 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i  428 (445)
                      .+|++.++.+..           ..++++++..+..+.|        ++|...+.++.+......+.. ...+......|
T Consensus       359 ~~Il~~~a~~~~-----------v~ls~eal~~L~~ys~--------~gRraln~L~~~~~~~~~~~~-~~~~~~~~~~I  418 (615)
T TIGR02903       359 ALIVLNAAEKIN-----------VHLAAGVEELIARYTI--------EGRKAVNILADVYGYALYRAA-EAGKENDKVTI  418 (615)
T ss_pred             HHHHHHHHHHcC-----------CCCCHHHHHHHHHCCC--------cHHHHHHHHHHHHHHHHHHHH-HhccCCCCeeE
Confidence            999999887531           2356666665544443        235556677666443322221 00122234689


Q ss_pred             cHHHHHHHHHH
Q 013316          429 TLEDLEAGLKL  439 (445)
Q Consensus       429 ~~~d~~~a~~~  439 (445)
                      +.+|+.++++.
T Consensus       419 ~~edv~~~l~~  429 (615)
T TIGR02903       419 TQDDVYEVIQI  429 (615)
T ss_pred             CHHHHHHHhCC
Confidence            99999998864

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.78  E-value=7.4e-19  Score=180.44  Aligned_cols=150  Identities=17%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCC--HHHHHHHHhhCCCCcCCCCCCCCChHHHHH-----------------------
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGD--LLAFQRLLRENPSLLNERNPVMAQTPLHVS-----------------------   55 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A-----------------------   55 (445)
                      +.|++++..+ .|.||||+|+..|+  .++++.|+ +.|+++|.++. .|+||||+|                       
T Consensus       200 e~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~  277 (764)
T PHA02716        200 NNGVNVNLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCV-NGMSPIMTYIINIDNINPEITNIYIESLDGNK  277 (764)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCC-CCCCHHHHHHHhhhccCHHHHHHHHHhccccc
Confidence            3566666654 46677777776664  35565554 35666776665 567777653                       


Q ss_pred             --------------HhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH--cCCHHHHHHHHhcCCCCcccccCCC
Q 013316           56 --------------AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANEGK  119 (445)
Q Consensus        56 --------------~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~--~g~~~~~~~Ll~~ga~~~~~~~~g~  119 (445)
                                    +..|+.+++++|++.    |++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|+
T Consensus       278 ~~~~~~~L~~~i~AA~~g~leiVklLLe~----GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~  353 (764)
T PHA02716        278 VKNIPMILHSYITLARNIDISVVYSFLQP----GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGN  353 (764)
T ss_pred             cccchhhhHHHHHHHHcCCHHHHHHHHhC----CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCC
Confidence                          234556666666663    66666667777777776543  3456677777777777777777777


Q ss_pred             Chhhhhhc-------------CCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316          120 TPLDHLSN-------------GPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus       120 tpl~~~a~-------------~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      ||||.++.             ..++.+++++|+++|+++..++..+.++..
T Consensus       354 TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        354 TVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             CHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            77732221             124566777777777666666555555543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.77  E-value=2.2e-18  Score=153.92  Aligned_cols=138  Identities=16%  Similarity=0.124  Sum_probs=116.0

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC--cHHHHHHhhcCCCCCCccccccc-CCCCc
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQN-MYGET   87 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~g~~v~~~d-~~g~t   87 (445)
                      ..+++|||+|+..|+.+.|+.|+..    ++..+. .|.||||+|+..+  +.+++++|+++    |++++.++ .+|.|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~----gadvn~~~~~~g~T   89 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCND-LYETPIFSCLEKDKVNVEILKFLIEN----GADVNFKTRDNNLS   89 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCc-cCCCHHHHHHHcCCCCHHHHHHHHHC----CCCCCccCCCCCCC
Confidence            3579999999999999999988853    566676 6999999999754  89999999995    89999987 58999


Q ss_pred             HHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCChhhhhhc-CCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           88 PLHMAAKN---GCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN-GPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        88 pLh~A~~~---g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~-~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      |||+|+..   ++.+++++|+++|++++.+|..|.||||+++. ..++.+++++|+.++++...++..+.++..
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh  163 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY  163 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHH
Confidence            99998764   47999999999999999999999999954433 356789999999999998777665555544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.9e-18  Score=175.13  Aligned_cols=150  Identities=24%  Similarity=0.279  Sum_probs=91.2

Q ss_pred             CccCccCCC-CCchHhHHHHHcC--CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      +|++.+..+ .|.||||+|+..|  +.++++.|+. .|++++..+. .|.||||+|+..|+.+++++|+++    |++++
T Consensus       130 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~----ga~~~  203 (480)
T PHA03100        130 NGANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNR-YGYTPLHIAVEKGNIDVIKFLLDN----GADIN  203 (480)
T ss_pred             cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccC-CCCCHHHHHHHhCCHHHHHHHHHc----CCCcc
Confidence            445554443 4556666666665  5555554443 3555555554 466666666666666666666653    55555


Q ss_pred             cccCCC------CcHHHHHHHcCC--HHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhh
Q 013316           80 AQNMYG------ETPLHMAAKNGC--NEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL  151 (445)
Q Consensus        80 ~~d~~g------~tpLh~A~~~g~--~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~  151 (445)
                      ..+..|      .||||+|+..++  .+++++|+++|++++.+|..|.||| |.|+..++.+++++|+..|+++..++..
T Consensus       204 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL-~~A~~~~~~~iv~~Ll~~gad~n~~d~~  282 (480)
T PHA03100        204 AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPL-HYAVYNNNPEFVKYLLDLGANPNLVNKY  282 (480)
T ss_pred             CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence            555555      566666666666  6666666666677777777777777 5666666677777777777766666555


Q ss_pred             hhhhhhHH
Q 013316          152 EACSETKA  159 (445)
Q Consensus       152 ~~~~~~~a  159 (445)
                      +.++...+
T Consensus       283 g~tpl~~A  290 (480)
T PHA03100        283 GDTPLHIA  290 (480)
T ss_pred             CCcHHHHH
Confidence            55554433

>PHA02946 ankyin-like protein; Provisional

Probab=99.77  E-value=1.7e-18  Score=171.97  Aligned_cols=150  Identities=13%  Similarity=0.093  Sum_probs=109.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc--HHHHHHhhcCCCCCCccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVEL   78 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~iv~~Ll~~~~~~g~~v   78 (445)
                      ++|++++..+ .|.||||+||..|+.++++.|+. +|+++|.++. .|+||||+|+..++  .+++++|+++    |+++
T Consensus        60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~d~-~g~TpLh~A~~~~~~~~e~v~lLl~~----Gadi  133 (446)
T PHA02946         60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLT-HGADPNACDK-QHKTPLYYLSGTDDEVIERINLLVQY----GAKI  133 (446)
T ss_pred             HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCC-CCCCHHHHHHHcCCchHHHHHHHHHc----CCCc
Confidence            5678888766 58888888888888888887664 6788888886 78888888877653  6788888885    7777


Q ss_pred             cc-ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc-CCCChHHHHHHHhhhhhHHhhhhhhhhhh
Q 013316           79 EA-QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN-GPGSAKLRELLLWHSEEQRKRRALEACSE  156 (445)
Q Consensus        79 ~~-~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~-~~~~~~i~~~ll~~~~~~~~~~~~~~~~~  156 (445)
                      +. .|..|.|||| |+..++.+++++|++.|++++.+|..|+||||+++. .....+++++|+++|+++..++..+.++.
T Consensus       134 n~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpL  212 (446)
T PHA02946        134 NNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPL  212 (446)
T ss_pred             ccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            74 5777888886 555677888888888888888888888888843322 23345677788888777766655555554


Q ss_pred             hH
Q 013316          157 TK  158 (445)
Q Consensus       157 ~~  158 (445)
                      ..
T Consensus       213 H~  214 (446)
T PHA02946        213 HI  214 (446)
T ss_pred             HH
Confidence            43

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.77  E-value=6.8e-19  Score=163.94  Aligned_cols=131  Identities=26%  Similarity=0.356  Sum_probs=121.0

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      ++|+++|... +..|||..||..|+++++++|+ .++++++..+. .|.|.||+||..||.+|+++|++.    |+|+|.
T Consensus       105 ~~ga~VN~tT~TNStPLraACfDG~leivKyLv-E~gad~~Ianr-hGhTcLmIa~ykGh~~I~qyLle~----gADvn~  178 (615)
T KOG0508|consen  105 RRGASVNDTTRTNSTPLRAACFDGHLEIVKYLV-EHGADPEIANR-HGHTCLMIACYKGHVDIAQYLLEQ----GADVNA  178 (615)
T ss_pred             HhcCccccccccCCccHHHHHhcchhHHHHHHH-HcCCCCccccc-CCCeeEEeeeccCchHHHHHHHHh----CCCcch
Confidence            5678888776 5669999999999999999999 57899999998 799999999999999999999994    999999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW  140 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~  140 (445)
                      ++..|+|+||.|+..|+++++++|+.+|+.+. +|..|.||| ..|+..++.+++++|+.
T Consensus       179 ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL-~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  179 KSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPL-LLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchH-HHHhhhcchHHHHHHhc
Confidence            99999999999999999999999999999876 455699999 99999999999999986

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.77  E-value=2.6e-17  Score=162.76  Aligned_cols=187  Identities=20%  Similarity=0.213  Sum_probs=128.8

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.++..|...+..               ...+..+||+||||||||++|+++|+.+.......        
T Consensus        11 ~~~~divGq~~i~~~L~~~i~~---------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~   75 (472)
T PRK14962         11 KTFSEVVGQDHVKKLIINALKK---------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR   75 (472)
T ss_pred             CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence            4678899999998888775431               22345689999999999999999999986532100        


Q ss_pred             ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                               ...+++++++.-      ..-..++++.+.+       ...||||||+|.+..           ..++.|+
T Consensus        76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LL  138 (472)
T PRK14962         76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALL  138 (472)
T ss_pred             HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHH
Confidence                     113444444321      1123344444332       347999999998865           6678889


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      ..+++  +.+++|++++...  .   ..+++++|| ..+.|++++.+++..+++..+...           ...++++++
T Consensus       139 k~LE~p~~~vv~Ilattn~~--k---l~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~e-----------gi~i~~eal  201 (472)
T PRK14962        139 KTLEEPPSHVVFVLATTNLE--K---VPPTIISRC-QVIEFRNISDELIIKRLQEVAEAE-----------GIEIDREAL  201 (472)
T ss_pred             HHHHhCCCcEEEEEEeCChH--h---hhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHc-----------CCCCCHHHH
Confidence            98887  6777777766422  2   278899999 789999999999999999888653           124566777


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      ..+. ..+      .|+.|.+.+.++.+.
T Consensus       202 ~~Ia-~~s------~GdlR~aln~Le~l~  223 (472)
T PRK14962        202 SFIA-KRA------SGGLRDALTMLEQVW  223 (472)
T ss_pred             HHHH-HHh------CCCHHHHHHHHHHHH
Confidence            7554 444      355666677777653

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.76  E-value=2.2e-17  Score=164.29  Aligned_cols=187  Identities=16%  Similarity=0.208  Sum_probs=131.3

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC-----CCCCC-
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG-----ILPTD-  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~-----~~~~~-  239 (445)
                      +.|++|+|++.+++.|.+++..-               +.+..+||+||+|||||++|+.+++.+.+..     ..... 
T Consensus        13 qtFddVIGQe~vv~~L~~al~~g---------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P   77 (700)
T PRK12323         13 RDFTTLVGQEHVVRALTHALEQQ---------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP   77 (700)
T ss_pred             CcHHHHcCcHHHHHHHHHHHHhC---------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence            46889999999999998865422               2344569999999999999999999997621     11111 


Q ss_pred             ----------------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHH
Q 013316          240 ----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA  296 (445)
Q Consensus       240 ----------------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~  296 (445)
                                      .+++++.++-      ..-..++++++..       +..|+||||+|.+..           ..
T Consensus        78 CG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~A  140 (700)
T PRK12323         78 CGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------HA  140 (700)
T ss_pred             CcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------HH
Confidence                            2333333211      1234455555442       347999999999976           77


Q ss_pred             HHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcc
Q 013316          297 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC  374 (445)
Q Consensus       297 ~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~  374 (445)
                      +|.||+.|++  +.+++|++|+.....     .+.+++|| ..+.|+.++.+++.+.+...+.+..           ..+
T Consensus       141 aNALLKTLEEPP~~v~FILaTtep~kL-----lpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Eg-----------i~~  203 (700)
T PRK12323        141 FNAMLKTLEEPPEHVKFILATTDPQKI-----PVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEG-----------IAH  203 (700)
T ss_pred             HHHHHHhhccCCCCceEEEEeCChHhh-----hhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcC-----------CCC
Confidence            8999999997  667788877654322     57899999 9999999999999999998887531           234


Q ss_pred             cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      +++++. ++...+      .|+.|...+++++++
T Consensus       204 d~eAL~-~IA~~A------~Gs~RdALsLLdQai  230 (700)
T PRK12323        204 EVNALR-LLAQAA------QGSMRDALSLTDQAI  230 (700)
T ss_pred             CHHHHH-HHHHHc------CCCHHHHHHHHHHHH
Confidence            556665 555666      455566666666653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.76  E-value=2.5e-18  Score=176.59  Aligned_cols=151  Identities=17%  Similarity=0.142  Sum_probs=127.4

Q ss_pred             CCc-cCccCC-C-CCchHhHHHHH--cCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc--HHHHHHhhcCCCCC
Q 013316            2 QKN-QDRRSR-S-AKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGND   74 (445)
Q Consensus         2 ~~~-~~~~~~-~-~~~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~iv~~Ll~~~~~~   74 (445)
                      +.| ++++.. + .|.||||+|+.  +++.++++.|+ +.|+++|..+. .|+||||+|+..|+  .++|++|+++    
T Consensus       163 e~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLL-e~GADVN~kD~-~G~TPLH~Aa~~g~~~~eIVklLLe~----  236 (764)
T PHA02716        163 DVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLC-NNGVNVNLQNN-HLITPLHTYLITGNVCASVIKKIIEL----  236 (764)
T ss_pred             HCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHH-HcCCCCCCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHc----
Confidence            567 888875 3 69999999875  46788998777 46899999997 79999999999995  5899999995    


Q ss_pred             CcccccccCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCCcccccC
Q 013316           75 KVELEAQNMYGETPLHMA-------------------------------------AKNGCNEAAKLLLAHGAFIEAKANE  117 (445)
Q Consensus        75 g~~v~~~d~~g~tpLh~A-------------------------------------~~~g~~~~~~~Ll~~ga~~~~~~~~  117 (445)
                      |+++|.+|..|.||||+|                                     +..|+.+++++|+++|++++.+|..
T Consensus       237 GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~  316 (764)
T PHA02716        237 GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSA  316 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCC
Confidence            899999999999999975                                     4457889999999999999999999


Q ss_pred             CCChhhhhhc-CCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316          118 GKTPLDHLSN-GPGSAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus       118 g~tpl~~~a~-~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                      |+||||+++. ..++.+++++|+++|++...++..+.++...
T Consensus       317 G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~  358 (764)
T PHA02716        317 GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT  358 (764)
T ss_pred             CCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence            9999954433 4567899999999999988877766666553

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.76  E-value=3.1e-18  Score=173.49  Aligned_cols=140  Identities=30%  Similarity=0.416  Sum_probs=127.3

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCC------ChHHHHHHhCCc--HHHHHHhhcCCC
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMA------QTPLHVSAGYNK--AEIVKSLLEWPG   72 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g------~tpLh~A~~~g~--~~iv~~Ll~~~~   72 (445)
                      +.|++++..+ .|.||||+|+..|+.++++.|+. .|++++..+. .|      .||||+|+..++  .+++++|+++  
T Consensus       164 ~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~--  239 (480)
T PHA03100        164 DKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLD-NGADINAGDI-ETLLFTIFETPLHIAACYNEITLEVVNYLLSY--  239 (480)
T ss_pred             HCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHH-cCCCccCCCC-CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc--
Confidence            5788887766 69999999999999999987775 6888988876 57      899999999999  9999999995  


Q ss_pred             CCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           73 NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        73 ~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                        |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||+ +.|...++.+++++|+++|++....
T Consensus       240 --g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl-~~A~~~~~~~iv~~Ll~~g~~i~~i  312 (480)
T PHA03100        240 --GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL-HIAILNNNKEIFKLLLNNGPSIKTI  312 (480)
T ss_pred             --CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH-HHHHHhCCHHHHHHHHhcCCCHHHH
Confidence              899999999999999999999999999999999999999999999999 7888889999999999999875543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=9.5e-19  Score=148.95  Aligned_cols=129  Identities=24%  Similarity=0.326  Sum_probs=104.7

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhh----CCCCcCCCCCCCCChHHHHHHhCCcH---HHHHHhhcCCCCCCccccccc-
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRE----NPSLLNERNPVMAQTPLHVSAGYNKA---EIVKSLLEWPGNDKVELEAQN-   82 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~~~g~tpLh~A~~~g~~---~iv~~Ll~~~~~~g~~v~~~d-   82 (445)
                      ..|.||||+||..|+...+..+...    .+..++..+. .|+||||+|+..|+.   +++++|+++    |++++.++ 
T Consensus        15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~e~v~~Ll~~----gadin~~~~   89 (154)
T PHA02736         15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNR-HGKQCVHIVSNPDKADPQEKLKLLMEW----GADINGKER   89 (154)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcC-CCCEEEEeecccCchhHHHHHHHHHHc----CCCccccCC
Confidence            3699999999999985332211110    0112334565 699999999999986   468889985    88999998 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  145 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~  145 (445)
                      ..|.||||+|+..++.+++++|+. .|++++.+|..|.||| |+|...++.+++++|+..+++.
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL-~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY-YVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH-HHHHHcCCHHHHHHHHHcCCCC
Confidence            489999999999999999999997 5999999999999999 7888889999999999888653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.76  E-value=1.5e-18  Score=143.76  Aligned_cols=122  Identities=27%  Similarity=0.479  Sum_probs=101.6

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---c-CcEEEEcCccccccC
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPM  284 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~-~~il~lDEid~l~~~  284 (445)
                      |||+||||||||++|+.+++.++.       +++.++++.+.+.+.+.+...+.+.|..+   . ++||||||+|.+.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~-------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~   73 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF-------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK   73 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS-------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc-------ccccccccccccccccccccccccccccccccccceeeeeccchhcccc
Confidence            689999999999999999999875       89999999999888998999999998876   3 699999999999987


Q ss_pred             CCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCchhHHHHHhhCcccc-cccccceeCCC
Q 013316          285 QKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNEGFC-RRVTKFFHFND  342 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~~~~~~~~~~~~~l~-~R~~~~i~~~~  342 (445)
                      .+..........++.|+..++.     .++++|++++....     .+|+++ +||+..|+||.
T Consensus        74 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~-----i~~~l~~~rf~~~i~~~~  132 (132)
T PF00004_consen   74 SQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDK-----IDPALLRSRFDRRIEFPL  132 (132)
T ss_dssp             CSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGG-----SCHHHHSTTSEEEEEE-S
T ss_pred             cccccccccccccceeeecccccccccccceeEEeeCChhh-----CCHhHHhCCCcEEEEcCC
Confidence            7444566677888888888875     34788888776222     389999 99999999873

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.76  E-value=1.1e-17  Score=177.36  Aligned_cols=173  Identities=20%  Similarity=0.262  Sum_probs=136.3

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH---cCCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM---VGILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~---~~~~~~~~~~~  243 (445)
                      .++.++|++...+++.+.+.                .....+++|+||||||||++|+.+++.+..   +..+...+++.
T Consensus       176 ~l~~vigr~~ei~~~i~iL~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~  239 (857)
T PRK10865        176 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA  239 (857)
T ss_pred             CCCcCCCCHHHHHHHHHHHh----------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence            45679999986655555321                335568999999999999999999998843   11233457888


Q ss_pred             eeccccc--ccccCCchhHHHHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          244 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       244 ~~~~~l~--~~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++.+.+.  .+|.|+.+..++++|++.    .+.||||||||.+.+.+.+++   ..++.+.|...+.++.+.+|++||.
T Consensus       240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~---~~d~~~~lkp~l~~g~l~~IgaTt~  316 (857)
T PRK10865        240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHCVGATTL  316 (857)
T ss_pred             EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc---chhHHHHhcchhhcCCCeEEEcCCC
Confidence            8888765  457888888899988763    347999999999987654322   2356777888999999999999999


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      +++...+..|++|++||. .|.++.|+.+++..|++....+.
T Consensus       317 ~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~  357 (857)
T PRK10865        317 DEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY  357 (857)
T ss_pred             HHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence            999888888999999994 78899999999999998766544

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.76  E-value=1.5e-17  Score=177.18  Aligned_cols=174  Identities=20%  Similarity=0.269  Sum_probs=135.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~  243 (445)
                      .++.++|+++..+++.+.+.                .....+++|+||||||||++|+.+++.+...   ..+...+++.
T Consensus       171 ~~~~~igr~~ei~~~~~~l~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~  234 (852)
T TIGR03346       171 KLDPVIGRDEEIRRTIQVLS----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA  234 (852)
T ss_pred             CCCcCCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence            45669999987665555321                3456789999999999999999999987431   1223447788


Q ss_pred             eeccccc--ccccCCchhHHHHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          244 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       244 ~~~~~l~--~~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++.+.+.  ..|.|+.+..+..+|++.    .+.||||||||.+.+.+.+.+   ..++.+.|...+.++.+.+|++||.
T Consensus       235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~~~Lk~~l~~g~i~~IgaTt~  311 (852)
T TIGR03346       235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG---AMDAGNMLKPALARGELHCIGATTL  311 (852)
T ss_pred             eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc---hhHHHHHhchhhhcCceEEEEeCcH
Confidence            8877765  457888888888888765    358999999999987543221   2356677888888999999999999


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                      +++..++..||++.+|| ..|.++.|+.+++..|++.+..++.
T Consensus       312 ~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e  353 (852)
T TIGR03346       312 DEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYE  353 (852)
T ss_pred             HHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhc
Confidence            99988888899999999 5789999999999999998766653

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.75  E-value=2.1e-18  Score=170.50  Aligned_cols=133  Identities=29%  Similarity=0.436  Sum_probs=120.3

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      .+.|.||||+||+.|+.+.+..|+ ..|++++.++. ++.||||.||.+|+...|+-||+-.  ....+|..|..|.|||
T Consensus       270 d~dg~tpLH~a~r~G~~~svd~Ll-~~Ga~I~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~--~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  270 DNDGCTPLHYAARQGGPESVDNLL-GFGASINSKNK-DEESPLHFAAIYGRINTVERLLQES--DTRLLNESDLHGMTPL  345 (929)
T ss_pred             cccCCchHHHHHHcCChhHHHHHH-HcCCcccccCC-CCCCchHHHHHcccHHHHHHHHhCc--CccccccccccCCCch
Confidence            457999999999999999998777 57899999997 8999999999999999999999831  3456789999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCc---ccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHh
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIE---AKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  147 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~---~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~  147 (445)
                      |+|++.|+..+++.|++.||...   ..|.+|+||| |.|+..++..++++|+++|++...
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaL-H~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTAL-HLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhh-hHHHHhccHHHHHHHHHcCCceee
Confidence            99999999999999999999987   5699999999 889999999999999999998744

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=4.6e-17  Score=162.44  Aligned_cols=188  Identities=18%  Similarity=0.220  Sum_probs=132.4

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------  239 (445)
                      ..|++++|++.+++.|..++..               ...+..+||+||||||||++|+++|+.+.+.......      
T Consensus        12 ktFddVIGQe~vv~~L~~aI~~---------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~   76 (702)
T PRK14960         12 RNFNELVGQNHVSRALSSALER---------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA   76 (702)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence            4688999999999999886542               2335567999999999999999999998763211111      


Q ss_pred             -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                 .+++++.++-      ..-..++.+++.+       ++.|+||||+|.+.+           ..++.|+
T Consensus        77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALL  139 (702)
T PRK14960         77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALL  139 (702)
T ss_pred             HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHH
Confidence                       2333333221      1234456655443       357999999999986           6778899


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.+++  +.+.+|++++.....     .+.+++|| ..+.|.+++.+++...+...+.+..           ..++.+++
T Consensus       140 KtLEEPP~~v~FILaTtd~~kI-----p~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEg-----------I~id~eAL  202 (702)
T PRK14960        140 KTLEEPPEHVKFLFATTDPQKL-----PITVISRC-LQFTLRPLAVDEITKHLGAILEKEQ-----------IAADQDAI  202 (702)
T ss_pred             HHHhcCCCCcEEEEEECChHhh-----hHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  566777776543322     46788998 9999999999999999999887642           24566777


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      . .+...+      .|+.|.+.+++++++.
T Consensus       203 ~-~IA~~S------~GdLRdALnLLDQaIa  225 (702)
T PRK14960        203 W-QIAESA------QGSLRDALSLTDQAIA  225 (702)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence            6 444555      4556666677777643

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=5.2e-17  Score=159.76  Aligned_cols=188  Identities=17%  Similarity=0.195  Sum_probs=135.6

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------  236 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---------  236 (445)
                      ..|++++|++.+++.|...+..               ...+.++||+||||||||++|+.+|+.+.+....         
T Consensus        10 ~~f~dliGQe~vv~~L~~a~~~---------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~   74 (491)
T PRK14964         10 SSFKDLVGQDVLVRILRNAFTL---------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH   74 (491)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence            4688999999999888875431               2345679999999999999999999988653211         


Q ss_pred             --------CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          237 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       237 --------~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                              ....++++++++-.      +-..++.+++.+       ++.|++|||+|.+..           ..++.|+
T Consensus        75 ~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL  137 (491)
T PRK14964         75 NCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL  137 (491)
T ss_pred             HHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence                    12245555554211      234566666554       458999999999976           6789999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.+++  ..+++|++++....  +   .+.+++|+ ..+.|.+++.+++...+...+.+..           ..++++++
T Consensus       138 K~LEePp~~v~fIlatte~~K--l---~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg-----------i~i~~eAL  200 (491)
T PRK14964        138 KTLEEPAPHVKFILATTEVKK--I---PVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN-----------IEHDEESL  200 (491)
T ss_pred             HHHhCCCCCeEEEEEeCChHH--H---HHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  56777777654322  2   46789998 8899999999999999999887642           24667787


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      . ++...+      .|+.|.+.+.+++++.
T Consensus       201 ~-lIa~~s------~GslR~alslLdqli~  223 (491)
T PRK14964        201 K-LIAENS------SGSMRNALFLLEQAAI  223 (491)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence            7 444555      4566777778887743

>PHA02795 ankyrin-like protein; Provisional

Probab=99.75  E-value=6.4e-18  Score=162.78  Aligned_cols=137  Identities=18%  Similarity=0.093  Sum_probs=86.9

Q ss_pred             CCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCC-CcCCCCC----CCCChHHHHHHhCCcHHHHHHhhcCCCCCCc
Q 013316            2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPS-LLNERNP----VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV   76 (445)
Q Consensus         2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~----~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~   76 (445)
                      +.||+.+.. .+.||||+|+..|+.++++.|+.. |+ +.+..+.    ..+.+++|.|+..++.+++++|+.+    |+
T Consensus       139 ~~GADIn~~-~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~----GA  212 (437)
T PHA02795        139 DHGAVIYKI-ECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY----IE  212 (437)
T ss_pred             HCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC----cC
Confidence            456666652 346677777777777666655543 43 2222210    1255666777777777777777764    66


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC--------ChHHHHHHHhhhhhH
Q 013316           77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG--------SAKLRELLLWHSEEQ  145 (445)
Q Consensus        77 ~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~--------~~~i~~~ll~~~~~~  145 (445)
                      ++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||| |.|...+        +.+++++|++++++.
T Consensus       213 DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpL-h~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCL-DVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            7777777777777777777777777777777777777777777777 4444443        346777777666543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.75  E-value=5.4e-18  Score=181.18  Aligned_cols=142  Identities=18%  Similarity=0.197  Sum_probs=103.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+||..|+.++++.|+. +|+++|.+|. .|+||||+|+..||.+++++|++.    ++..+ 
T Consensus       546 ~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~-~G~TpL~~A~~~g~~~iv~~L~~~----~~~~~-  618 (823)
T PLN03192        546 KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDA-NGNTALWNAISAKHHKIFRILYHF----ASISD-  618 (823)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHhc----CcccC-
Confidence            3556666655 46677777777777666665554 4666666665 566777777777777777766653    22222 


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE  152 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~  152 (445)
                       ...|.++||+|+..|+.+++++|+++|++++.+|.+|+||| |+|+..++.+++++|+.+|++....+..+
T Consensus       619 -~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        619 -PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL-QVAMAEDHVDMVRLLIMNGADVDKANTDD  688 (823)
T ss_pred             -cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCCcHHHHHHHHHcCCCCCCCCCCC
Confidence             23355677788888888899999999999999999999999 88888999999999999999877766443

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=6e-17  Score=161.82  Aligned_cols=187  Identities=15%  Similarity=0.185  Sum_probs=132.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------  239 (445)
                      ..|++++|++.+++.|..++..               ...+..+||+||||||||++|+++|+.+.+.......      
T Consensus        13 ~~f~divGq~~v~~~L~~~~~~---------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~   77 (509)
T PRK14958         13 RCFQEVIGQAPVVRALSNALDQ---------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE   77 (509)
T ss_pred             CCHHHhcCCHHHHHHHHHHHHh---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence            4688999999999999987642               2234457999999999999999999999764322111      


Q ss_pred             -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                 .+++++.++-      ..-..++.+++..       ++.|+||||+|.+.+           ..++.|+
T Consensus        78 ~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLL  140 (509)
T PRK14958         78 NCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALL  140 (509)
T ss_pred             HHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHH
Confidence                       1444444321      1233456655443       347999999999986           6788999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  ..+++|++|+...  .+   -+.+++|+ ..++|.+++.+++...+...+++..           ..++++++
T Consensus       141 k~LEepp~~~~fIlattd~~--kl---~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg-----------i~~~~~al  203 (509)
T PRK14958        141 KTLEEPPSHVKFILATTDHH--KL---PVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN-----------VEFENAAL  203 (509)
T ss_pred             HHHhccCCCeEEEEEECChH--hc---hHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  4677777765432  22   45689998 8999999999999999998888642           23566676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      .. +...+      .|+.|.+.+++++++
T Consensus       204 ~~-ia~~s------~GslR~al~lLdq~i  225 (509)
T PRK14958        204 DL-LARAA------NGSVRDALSLLDQSI  225 (509)
T ss_pred             HH-HHHHc------CCcHHHHHHHHHHHH
Confidence            64 44555      455667777887764

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=99.75  E-value=2.7e-18  Score=171.92  Aligned_cols=201  Identities=19%  Similarity=0.201  Sum_probs=144.5

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      .++|.+.....+.+.+.++              .....+++++|++||||+++|++++..+.+.    ..+|+.++|+.+
T Consensus       140 ~lig~s~~~~~~~~~i~~~--------------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~----~~~~i~~~c~~~  201 (441)
T PRK10365        140 GMVGKSPAMQHLLSEIALV--------------APSEATVLIHGDSGTGKELVARAIHASSARS----EKPLVTLNCAAL  201 (441)
T ss_pred             ceEecCHHHHHHHHHHhhc--------------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCC----CCCeeeeeCCCC
Confidence            3677777766665544332              3456789999999999999999999877652    349999999875


Q ss_pred             c-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc---------
Q 013316          250 V-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------  308 (445)
Q Consensus       250 ~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------  308 (445)
                      .     +.++|+....       ....+..+.+|+|||||||.+.+           ..|..|+..++.+.         
T Consensus       202 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~  270 (441)
T PRK10365        202 NESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP-----------MMQVRLLRAIQEREVQRVGSNQT  270 (441)
T ss_pred             CHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH-----------HHHHHHHHHHccCcEEeCCCCce
Confidence            3     3345642211       12356778899999999999987           77888888887643         


Q ss_pred             ----EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          309 ----VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       309 ----~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                          +.+|++++.+....+.  ...+.|..|+. ..|.+|++.  .+|+..++++++++.....+    +....++++++
T Consensus       271 ~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~----~~~~~~~~~a~  346 (441)
T PRK10365        271 ISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNR----KAVKGFTPQAM  346 (441)
T ss_pred             eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhC----CCCCCcCHHHH
Confidence                4577787776554331  11234445663 567778877  57999999999988654322    11235788999


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ..+..+.|      |||.|+|+++++++..
T Consensus       347 ~~L~~~~w------pgN~reL~~~~~~~~~  370 (441)
T PRK10365        347 DLLIHYDW------PGNIRELENAVERAVV  370 (441)
T ss_pred             HHHHhCCC------CCHHHHHHHHHHHHHH
Confidence            99998888      9999999999999865

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.75  E-value=6e-17  Score=160.68  Aligned_cols=188  Identities=19%  Similarity=0.266  Sum_probs=134.2

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  238 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-------  238 (445)
                      ..|++++|++.+++.|...+..               ...+.++||+||||||||++|+++|+.+.+......       
T Consensus        18 ~~f~dliGq~~vv~~L~~ai~~---------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C   82 (507)
T PRK06645         18 SNFAELQGQEVLVKVLSYTILN---------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC   82 (507)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence            4678899999999888874431               234678999999999999999999999976422111       


Q ss_pred             --------------CCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHH
Q 013316          239 --------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEAL  297 (445)
Q Consensus       239 --------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~  297 (445)
                                    ..++++++++      ..+...++.+++.+       ++.|+||||+|.+..           ..+
T Consensus        83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~  145 (507)
T PRK06645         83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAF  145 (507)
T ss_pred             CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHH
Confidence                          1222222211      01334566666655       357999999999875           678


Q ss_pred             HHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCccc
Q 013316          298 EEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCS  375 (445)
Q Consensus       298 ~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~  375 (445)
                      +.|++.+++  ..+++|++|+....  +   .+.+++|+ ..++|++++.+++..+++..+++..           ..++
T Consensus       146 naLLk~LEepp~~~vfI~aTte~~k--I---~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~eg-----------i~ie  208 (507)
T PRK06645        146 NALLKTLEEPPPHIIFIFATTEVQK--I---PATIISRC-QRYDLRRLSFEEIFKLLEYITKQEN-----------LKTD  208 (507)
T ss_pred             HHHHHHHhhcCCCEEEEEEeCChHH--h---hHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcC-----------CCCC
Confidence            889998886  56677777654332  2   57789998 8899999999999999999988642           2456


Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ++++.. +...+      .|+.|.+.+.+++++.
T Consensus       209 ~eAL~~-Ia~~s------~GslR~al~~Ldkai~  235 (507)
T PRK06645        209 IEALRI-IAYKS------EGSARDAVSILDQAAS  235 (507)
T ss_pred             HHHHHH-HHHHc------CCCHHHHHHHHHHHHH
Confidence            677764 44444      5677788888888744

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.75  E-value=1e-17  Score=169.69  Aligned_cols=152  Identities=21%  Similarity=0.220  Sum_probs=109.2

Q ss_pred             CCccCccCCC-CCchHhHHHHHc---CCHHHHHHHHhhCCCCc-CCCCCCCCChHHHHHHhC--CcHHHHHHhhcCCCCC
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQS---GDLLAFQRLLRENPSLL-NERNPVMAQTPLHVSAGY--NKAEIVKSLLEWPGND   74 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~-~~~~~~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~   74 (445)
                      +.|++++..+ .|.||||.|+..   |+.++++.|+. .|+++ +..+. .|+||||+|+..  ++.+++++|+++    
T Consensus        96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~d~-~g~tpLh~a~~~~~~~~~iv~~Ll~~----  169 (494)
T PHA02989         96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVKNS-RGYNLLHMYLESFSVKKDVIKILLSF----  169 (494)
T ss_pred             HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCcccccCC-CCCCHHHHHHHhccCCHHHHHHHHHc----
Confidence            5677777766 578888877654   56777776664 57777 56665 688888887643  567888888874    


Q ss_pred             Cccccc-ccCCCCcHHHHHHHcC----CHHHHHHHHhcCCCCcc------------------------------------
Q 013316           75 KVELEA-QNMYGETPLHMAAKNG----CNEAAKLLLAHGAFIEA------------------------------------  113 (445)
Q Consensus        75 g~~v~~-~d~~g~tpLh~A~~~g----~~~~~~~Ll~~ga~~~~------------------------------------  113 (445)
                      |++++. .+.+|.||||+|+..+    +.+++++|++.|++++.                                    
T Consensus       170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~adv  249 (494)
T PHA02989        170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI  249 (494)
T ss_pred             CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCC
Confidence            777776 5677888888876553    77888888877776543                                    


Q ss_pred             --cccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHh
Q 013316          114 --KANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAK  160 (445)
Q Consensus       114 --~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~  160 (445)
                        +|..|+||| |+|+..++.+++++|+++|+++..++..+.++...+.
T Consensus       250 n~~d~~G~TpL-~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        250 NKKDKKGFNPL-LISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             CCCCCCCCCHH-HHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence              344578888 6677777888888888888888777766666665543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.74  E-value=9.3e-18  Score=169.65  Aligned_cols=148  Identities=23%  Similarity=0.205  Sum_probs=125.6

Q ss_pred             CCccCccCCC-CCchHhHHHHHcC---CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC-cHHHHHHhhcCCCCCCc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGNDKV   76 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~iv~~Ll~~~~~~g~   76 (445)
                      +.|++++..+ .|.||||+|+..|   +.++++.|+ +.|+++|..+. .|+||||+|+..| +.+++++|+++    |+
T Consensus        35 ~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll-~~Gadin~~~~-~g~TpLh~A~~~~~~~~iv~lLl~~----ga  108 (471)
T PHA03095         35 AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLL-EAGADVNAPER-CGFTPLHLYLYNATTLDVIKLLIKA----GA  108 (471)
T ss_pred             HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHH-HCCCCCCCCCC-CCCCHHHHHHHcCCcHHHHHHHHHc----CC
Confidence            5788888877 5899999999998   898888777 57899999997 7999999999999 59999999995    89


Q ss_pred             ccccccCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC-CCChHHHHHHHhhhhhHHhhhhhhh
Q 013316           77 ELEAQNMYGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG-PGSAKLRELLLWHSEEQRKRRALEA  153 (445)
Q Consensus        77 ~v~~~d~~g~tpLh~A~--~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~-~~~~~i~~~ll~~~~~~~~~~~~~~  153 (445)
                      +++.+|..|.||||+|+  ..++.+++++|+++|++++.+|..|.||||.+... ....+++++|++++++....+..+.
T Consensus       109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~  188 (471)
T PHA03095        109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFR  188 (471)
T ss_pred             CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCC
Confidence            99999999999999999  55688999999999999999999999999443333 3367899999999887665544333


Q ss_pred             hh
Q 013316          154 CS  155 (445)
Q Consensus       154 ~~  155 (445)
                      ++
T Consensus       189 t~  190 (471)
T PHA03095        189 SL  190 (471)
T ss_pred             CH
Confidence            33

>PHA02798 ankyrin-like protein; Provisional

Probab=99.74  E-value=1.6e-17  Score=168.09  Aligned_cols=46  Identities=22%  Similarity=0.088  Sum_probs=32.8

Q ss_pred             cccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHh
Q 013316          114 KANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAK  160 (445)
Q Consensus       114 ~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~  160 (445)
                      +|..|+||| |.|+..++.+++++|+..|+++...+..+.++...+.
T Consensus       254 ~d~~G~TPL-~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~  299 (489)
T PHA02798        254 VDELGFNPL-YYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAF  299 (489)
T ss_pred             cCcCCccHH-HHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHH
Confidence            445577887 6666777778888888888887777766666665553

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.8e-17  Score=152.93  Aligned_cols=171  Identities=23%  Similarity=0.248  Sum_probs=120.8

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      |+.+|-.-+...+|.++......-        +....+-.+|+||||||||||++||-||..++....++++.-+..   
T Consensus       354 l~~ViL~psLe~Rie~lA~aTaNT--------K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP---  422 (630)
T KOG0742|consen  354 LEGVILHPSLEKRIEDLAIATANT--------KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP---  422 (630)
T ss_pred             cCCeecCHHHHHHHHHHHHHhccc--------ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc---
Confidence            556777777778888765543211        122345679999999999999999999998876443333321111   


Q ss_pred             cccccccC-CchhHHHHHHHHc----cCcEEEEcCccccccCCCCC-CchhHHHHHHHHHhhc--cCCcEEEEEecCchh
Q 013316          248 DLVGEFVG-HTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVM--DGGKVVVIFAGYSEP  319 (445)
Q Consensus       248 ~l~~~~~g-~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~-~~~~~~~~~~~ll~~~--~~~~~~~i~a~~~~~  319 (445)
                       +     | +....+.++|+=+    +|-+|||||+|.+...|... -.+..+.++|.||---  ++.+++++++|+...
T Consensus       423 -l-----G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg  496 (630)
T KOG0742|consen  423 -L-----GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG  496 (630)
T ss_pred             -c-----chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence             1     1 1234566778654    56799999999999877643 2445556777766433  236788888876554


Q ss_pred             HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccc
Q 013316          320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                      -.     |-++-+|+|.+++||.|-.+|+..++..|+.++.
T Consensus       497 dl-----DsAV~DRide~veFpLPGeEERfkll~lYlnkyi  532 (630)
T KOG0742|consen  497 DL-----DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI  532 (630)
T ss_pred             ch-----hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence            32     7788899999999999999999999999999874

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=1.9e-17  Score=153.42  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=104.2

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCC---CCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc-cCCCCc
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERN---PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGET   87 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~-d~~g~t   87 (445)
                      ...++||.|+..|+.++++.|+ +.|+++|..+   +..|.||||+|+..++.+++++|+++    |+++|.+ +..|.|
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL-~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~----GADVN~~~~~~g~T  106 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAIL-KLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY----GADVNRYAEEAKIT  106 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHH-HCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCcCcccCCCCCC
Confidence            4556788888889999999777 5689999874   22699999999999999999999995    8999986 468999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHH
Q 013316           88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL  139 (445)
Q Consensus        88 pLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll  139 (445)
                      |||+|+..++.+++++|+.+|++++.+|..|+||+ +.|...++..++.++.
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL-~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPI-ELALMICNNFLAFMIC  157 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHhCChhHHHHhc
Confidence            99999999999999999999999999999999999 6666656666655543

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.74  E-value=1.6e-16  Score=153.86  Aligned_cols=187  Identities=15%  Similarity=0.191  Sum_probs=127.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------  239 (445)
                      ..|++++|++.+++.+...+..               ...+..++|+||||||||++|+++++.+.+.......      
T Consensus        13 ~~~~~iiGq~~~~~~l~~~~~~---------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~   77 (363)
T PRK14961         13 QYFRDIIGQKHIVTAISNGLSL---------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI   77 (363)
T ss_pred             CchhhccChHHHHHHHHHHHHc---------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            4688899999999988875431               1234457999999999999999999998753211111      


Q ss_pred             -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                 .+.+++++.-      .....++.+++..       ...|+||||+|.+..           ..++.|+
T Consensus        78 ~c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLL  140 (363)
T PRK14961         78 ICKEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALL  140 (363)
T ss_pred             HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHH
Confidence                       1222222110      1223445555442       346999999998865           6778899


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.+++  ..+.+|++++...  .   ..+++++|+ ..++|++|+.+++.++++..+++..           ..++++++
T Consensus       141 k~lEe~~~~~~fIl~t~~~~--~---l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g-----------~~i~~~al  203 (363)
T PRK14961        141 KTLEEPPQHIKFILATTDVE--K---IPKTILSRC-LQFKLKIISEEKIFNFLKYILIKES-----------IDTDEYAL  203 (363)
T ss_pred             HHHhcCCCCeEEEEEcCChH--h---hhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99986  5566677665432  2   267899998 8899999999999999998887641           23556666


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      . .+...+      .|+.|.+.+.+++++
T Consensus       204 ~-~ia~~s------~G~~R~al~~l~~~~  225 (363)
T PRK14961        204 K-LIAYHA------HGSMRDALNLLEHAI  225 (363)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHH
Confidence            6 444555      456667777887764

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.74  E-value=5.8e-17  Score=166.35  Aligned_cols=186  Identities=17%  Similarity=0.222  Sum_probs=129.2

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCe-eEeecCCCCchhHHHHHHHHHHHHcCCCCCCC----
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR----  240 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~----  240 (445)
                      ..|++|+|++.++..|++++..                +...| +||+||||||||++||++|+.+.+.......+    
T Consensus        13 ~tFddIIGQe~Iv~~LknaI~~----------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C   76 (944)
T PRK14949         13 ATFEQMVGQSHVLHALTNALTQ----------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC   76 (944)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHh----------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence            4678899999999988876542                23345 58999999999999999999997642111001    


Q ss_pred             -------------eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHH
Q 013316          241 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI  300 (445)
Q Consensus       241 -------------~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~l  300 (445)
                                   +++++.++-      ..-..++.+++..       +..|+||||+|.+..           ..++.|
T Consensus        77 ~sC~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNAL  139 (944)
T PRK14949         77 SSCVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNAL  139 (944)
T ss_pred             hHHHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence                         122222110      0123344444322       347999999999976           789999


Q ss_pred             HhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316          301 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  378 (445)
Q Consensus       301 l~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  378 (445)
                      |+.|++  +.+++|++|+....  +   .+.+++|| .+++|++++.+++.+.+++.+...           ...+++++
T Consensus       140 LKtLEEPP~~vrFILaTTe~~k--L---l~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~E-----------gI~~edeA  202 (944)
T PRK14949        140 LKTLEEPPEHVKFLLATTDPQK--L---PVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQE-----------QLPFEAEA  202 (944)
T ss_pred             HHHHhccCCCeEEEEECCCchh--c---hHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHc-----------CCCCCHHH
Confidence            999997  66777777665443  2   57789998 999999999999999999888763           12456667


Q ss_pred             HHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          379 IAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       379 l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      +. ++...+.      |+.|.+.+++++++
T Consensus       203 L~-lIA~~S~------Gd~R~ALnLLdQal  225 (944)
T PRK14949        203 LT-LLAKAAN------GSMRDALSLTDQAI  225 (944)
T ss_pred             HH-HHHHHcC------CCHHHHHHHHHHHH
Confidence            66 5556664      45555666676654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.73  E-value=1e-16  Score=170.05  Aligned_cols=221  Identities=19%  Similarity=0.320  Sum_probs=152.6

Q ss_pred             HHHHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316          162 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  240 (445)
Q Consensus       162 ~~~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~  240 (445)
                      ..++..+. .++|++.++..|.+.+....       .++.....+...++|+||||||||++|++||+.+...    ..+
T Consensus       560 ~~l~~~l~~~viGQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~~~  628 (857)
T PRK10865        560 LRMEQELHHRVIGQNEAVEAVSNAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS----DDA  628 (857)
T ss_pred             HHHHHHhCCeEeCCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC----CCc
Confidence            34455554 48999999999888665432       1221112233578999999999999999999988642    237


Q ss_pred             eEEeecccccc-----ccc-------CCc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC
Q 013316          241 VTEVQRTDLVG-----EFV-------GHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG  307 (445)
Q Consensus       241 ~~~~~~~~l~~-----~~~-------g~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~  307 (445)
                      |+.++++.+..     .++       |+. ...+...+....++|||||||+++.+           .+++.|++.++++
T Consensus       629 ~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g  697 (857)
T PRK10865        629 MVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDG  697 (857)
T ss_pred             EEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhC
Confidence            88888876532     223       332 23345556666789999999998887           7889999999764


Q ss_pred             c-------------EEEEEecCch--hHH------------H----H--HhhCcccccccccceeCCCCCHHHHHHHHHH
Q 013316          308 K-------------VVVIFAGYSE--PMK------------R----V--IASNEGFCRRVTKFFHFNDFNSEELAKILHI  354 (445)
Q Consensus       308 ~-------------~~~i~a~~~~--~~~------------~----~--~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~  354 (445)
                      .             .++|++++..  .+.            .    .  ....|+|++|+|.++.|.+++.+++.+|++.
T Consensus       698 ~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~  777 (857)
T PRK10865        698 RLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQI  777 (857)
T ss_pred             ceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHH
Confidence            2             2466666541  100            0    0  0124899999999999999999999999999


Q ss_pred             HHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          355 KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      ++.+...++...++  ...++++++..+..+.+..    ...+|.+++++++-+..
T Consensus       778 ~L~~l~~rl~~~gi--~l~is~~al~~L~~~gy~~----~~GARpL~r~I~~~i~~  827 (857)
T PRK10865        778 QLQRLYKRLEERGY--EIHISDEALKLLSENGYDP----VYGARPLKRAIQQQIEN  827 (857)
T ss_pred             HHHHHHHHHHhCCC--cCcCCHHHHHHHHHcCCCc----cCChHHHHHHHHHHHHH
Confidence            99886554433333  3468888988777655422    23489999999887665

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.73  E-value=1.4e-17  Score=175.38  Aligned_cols=150  Identities=21%  Similarity=0.225  Sum_probs=81.5

Q ss_pred             CCccCccCCC-CCchHhHHHHHcC-CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC-CcHHHHHHhhcCCCCCCccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-NKAEIVKSLLEWPGNDKVEL   78 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~g~~v   78 (445)
                      +.|++++..+ .|.||||+|+..| +.+.++.|+ ..|++++..+. .|+||||+|+.. ++.+++++|++.    |+++
T Consensus       295 ~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll-~~gadin~~d~-~g~TpLh~A~~~~~~~~iv~lLl~~----gadi  368 (682)
T PHA02876        295 ERGADVNAKNIKGETPLYLMAKNGYDTENIRTLI-MLGADVNAADR-LYITPLHQASTLDRNKDIVITLLEL----GANV  368 (682)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHH-HcCCCCCCccc-CCCcHHHHHHHhCCcHHHHHHHHHc----CCCC
Confidence            3455555544 4666666666666 344444333 34555665554 466666666553 345555555553    5556


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+++...+...++++|+..+++.+.++..+.++..
T Consensus       369 n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh  447 (682)
T PHA02876        369 NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLH  447 (682)
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHH
Confidence            6666666666666666666666666665555555555555555533333333344455555555555444444444443

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.73  E-value=1.9e-16  Score=160.22  Aligned_cols=187  Identities=16%  Similarity=0.213  Sum_probs=130.1

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------  239 (445)
                      ..|++++|++.++..|...+..               ...+..+||+||+|||||++|+.+|+.+.+.......      
T Consensus        13 ~~f~divGQe~vv~~L~~~l~~---------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~   77 (647)
T PRK07994         13 QTFAEVVGQEHVLTALANALDL---------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD   77 (647)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence            4688999999999988875542               1223346899999999999999999999874221111      


Q ss_pred             -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                 .+++++.++-      ..-..++++++..       +..|+||||+|.+..           ..++.||
T Consensus        78 ~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NALL  140 (647)
T PRK07994         78 NCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL  140 (647)
T ss_pred             HHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHHH
Confidence                       1233332210      0223455555443       347999999999986           7889999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  +.+++|++|+....  +   -+.+++|| ..++|.+++.+++.+.+.+.+.+..           ..++.+++
T Consensus       141 KtLEEPp~~v~FIL~Tt~~~k--L---l~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~-----------i~~e~~aL  203 (647)
T PRK07994        141 KTLEEPPEHVKFLLATTDPQK--L---PVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQ-----------IPFEPRAL  203 (647)
T ss_pred             HHHHcCCCCeEEEEecCCccc--c---chHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99997  66778887765442  2   57789998 9999999999999999998887641           23455666


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      . .+...+      .|+.|.+.++++.++
T Consensus       204 ~-~Ia~~s------~Gs~R~Al~lldqai  225 (647)
T PRK07994        204 Q-LLARAA------DGSMRDALSLTDQAI  225 (647)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHH
Confidence            5 555666      445555666666653

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.73  E-value=8.3e-17  Score=146.25  Aligned_cols=186  Identities=14%  Similarity=0.167  Sum_probs=120.5

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccccc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLI  282 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~  282 (445)
                      ..+.+++|+||||||||++|+++++.+...+    .+++.++++.+....        ...+... ...+|+|||+|.+.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~----~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~~l~  103 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERG----KSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVEAIA  103 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChhhhc
Confidence            4567999999999999999999999987533    278888888774321        2233322 33699999999987


Q ss_pred             cCCCCCCchhHHHHHHHHHhhc-cCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhcc
Q 013316          283 PMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      ....      ..+.+-.++..+ +.+. .+|++++..+.. .....+.|.+|+.  ..+.+|+|+.+++..+++.++.+.
T Consensus       104 ~~~~------~~~~L~~~l~~~~~~~~-~iIits~~~~~~-~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~  175 (226)
T TIGR03420       104 GQPE------WQEALFHLYNRVREAGG-RLLIAGRAAPAQ-LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR  175 (226)
T ss_pred             CChH------HHHHHHHHHHHHHHcCC-eEEEECCCChHH-CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc
Confidence            5320      012222333222 2233 444444433322 1111267888874  689999999999999998876643


Q ss_pred             cccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          360 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                                 ...++++++..+.. .|      ++|.|+++++++++......          .-.+|+.+.+.+.+
T Consensus       176 -----------~~~~~~~~l~~L~~-~~------~gn~r~L~~~l~~~~~~~~~----------~~~~i~~~~~~~~~  225 (226)
T TIGR03420       176 -----------GLQLPDEVADYLLR-HG------SRDMGSLMALLDALDRASLA----------AKRKITIPFVKEVL  225 (226)
T ss_pred             -----------CCCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHh
Confidence                       23567778876665 57      89999999999987432111          11257777776654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=6.3e-18  Score=148.18  Aligned_cols=130  Identities=28%  Similarity=0.362  Sum_probs=111.0

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      .+-|.+|||+||+.|+..+++.||. .|+.+|..+- ...||||+|+..||-++|+.|++.    .+|+|..+..|+|||
T Consensus        31 ddhgfsplhwaakegh~aivemll~-rgarvn~tnm-gddtplhlaaahghrdivqkll~~----kadvnavnehgntpl  104 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTNM-GDDTPLHLAAAHGHRDIVQKLLSR----KADVNAVNEHGNTPL  104 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHh-cccccccccC-CCCcchhhhhhcccHHHHHHHHHH----hcccchhhccCCCch
Confidence            4468999999999999999987764 6899998885 457999999999999999999985    789999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  146 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~  146 (445)
                      |+||..|.-.+++-|+.+||.+++.|+.|.||+ -.|++.-...+.++..++|..++
T Consensus       105 hyacfwgydqiaedli~~ga~v~icnk~g~tpl-dkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPL-DKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceeeecccCCCCch-hhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999 55665544555555555665543

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.73  E-value=1e-16  Score=169.53  Aligned_cols=219  Identities=18%  Similarity=0.277  Sum_probs=150.2

Q ss_pred             HHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316          162 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  240 (445)
Q Consensus       162 ~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~  240 (445)
                      ..++..|.+ ++||+.+...+.+.+...       ..++.....+...+||.||||||||.+|+++|+.+...    ...
T Consensus       558 ~~l~~~L~~~v~GQ~~Av~~v~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~----~~~  626 (852)
T TIGR03345       558 LSLPDRLAERVIGQDHALEAIAERIRTA-------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG----EQN  626 (852)
T ss_pred             HHHHHHhcCeEcChHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC----Ccc
Confidence            344555543 999999998888865432       23333333333458999999999999999999998542    227


Q ss_pred             eEEeeccccc---------cc---ccCCc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC
Q 013316          241 VTEVQRTDLV---------GE---FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG  307 (445)
Q Consensus       241 ~~~~~~~~l~---------~~---~~g~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~  307 (445)
                      ++.++++.+.         +.   |+|+. +..+...++..+++||+|||||++++           ++++.|++.++++
T Consensus       627 ~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~g  695 (852)
T TIGR03345       627 LITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDKG  695 (852)
T ss_pred             eEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhcc
Confidence            7888877642         22   45542 23466777778889999999998887           7888999999864


Q ss_pred             c-------------EEEEEecCchhHH--H-----------------H-----HhhCcccccccccceeCCCCCHHHHHH
Q 013316          308 K-------------VVVIFAGYSEPMK--R-----------------V-----IASNEGFCRRVTKFFHFNDFNSEELAK  350 (445)
Q Consensus       308 ~-------------~~~i~a~~~~~~~--~-----------------~-----~~~~~~l~~R~~~~i~~~~~~~~~~~~  350 (445)
                      .             .++|++++.....  .                 +     ..-.|+|++|++ +|.|.+++.+++.+
T Consensus       696 ~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~  774 (852)
T TIGR03345       696 VMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAA  774 (852)
T ss_pred             eeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHH
Confidence            2             4666665421110  0                 0     012488999996 89999999999999


Q ss_pred             HHHHHHhccccccccc-ccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          351 ILHIKMNNQTEDSLLY-GFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       351 il~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      |++..+.+...++... ++.  -.++++++..+....++   ...| +|-+++++++-+.
T Consensus       775 Iv~~~L~~l~~rl~~~~gi~--l~i~d~a~~~La~~g~~---~~~G-AR~L~r~Ie~~i~  828 (852)
T TIGR03345       775 IVRLKLDRIARRLKENHGAE--LVYSEALVEHIVARCTE---VESG-ARNIDAILNQTLL  828 (852)
T ss_pred             HHHHHHHHHHHHHHHhcCce--EEECHHHHHHHHHHcCC---CCCC-hHHHHHHHHHHHH
Confidence            9999998765444322 333  36778888877765542   1223 7888888887544

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.4e-16  Score=161.82  Aligned_cols=175  Identities=19%  Similarity=0.281  Sum_probs=143.0

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH---cCCCCCCCeE
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM---VGILPTDRVT  242 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~---~~~~~~~~~~  242 (445)
                      ..++-++|.+.-++++.+.+-                .+...+.+|.|+||+|||.++..+|+.+-.   +..+....++
T Consensus       167 gklDPvIGRd~EI~r~iqIL~----------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~  230 (786)
T COG0542         167 GKLDPVIGRDEEIRRTIQILS----------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY  230 (786)
T ss_pred             CCCCCCcChHHHHHHHHHHHh----------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence            345669999976666555322                345678899999999999999999998854   2235566788


Q ss_pred             Eeecccccc--cccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          243 EVQRTDLVG--EFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       243 ~~~~~~l~~--~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      .++.+.++.  +|-|+-+..+..++++..   +.||||||||.+.+.+...+ + ..++-|.|...+..|.+.+|+|||.
T Consensus       231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLARGeL~~IGATT~  308 (786)
T COG0542         231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALARGELRCIGATTL  308 (786)
T ss_pred             EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHhcCCeEEEEeccH
Confidence            888888764  489999999999887654   78999999999998665433 2 4577888999999999999999999


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      +++...+..|++|.||| +.|.+..|+.++-..|++-.-.++
T Consensus       309 ~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~y  349 (786)
T COG0542         309 DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERY  349 (786)
T ss_pred             HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 999999999999999999755544

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.1e-16  Score=142.78  Aligned_cols=163  Identities=17%  Similarity=0.221  Sum_probs=110.8

Q ss_pred             CcEEEEcCccccccCCCCCCchhHHH-HHHHHHhhccCC------------cEEEEEecCchhHHHHHhhCccccccccc
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIE-ALEEIMSVMDGG------------KVVVIFAGYSEPMKRVIASNEGFCRRVTK  336 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~-~~~~ll~~~~~~------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~  336 (445)
                      .||+||||||+++.+.++++++.+++ +|..||..+++.            .+.+|+++.-. ...+-..-|.|..||+.
T Consensus       251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh-~sKPSDLiPELQGRfPI  329 (444)
T COG1220         251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH-VAKPSDLIPELQGRFPI  329 (444)
T ss_pred             cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCcee-cCChhhcChhhcCCCce
Confidence            49999999999998877555566664 566699998862            35777766422 12222235999999999


Q ss_pred             ceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHHHh--hhcccCchhhHHHHHHHHHh
Q 013316          337 FFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK--QRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       337 ~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~n~r~l~~~~~~~~~~  410 (445)
                      .+++..++.++...||.    ..++++..-+..+++.  -.|+++++..+..-.|.-.  ....| +|.|..++|+....
T Consensus       330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~--l~FtddaI~~iAeiA~~vN~~~ENIG-ARRLhTvlErlLed  406 (444)
T COG1220         330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVE--LEFTDDAIKRIAEIAYQVNEKTENIG-ARRLHTVLERLLED  406 (444)
T ss_pred             EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCee--EEecHHHHHHHHHHHHHhcccccchh-HHHHHHHHHHHHHH
Confidence            99999999999999983    3455554445555554  4788899988766665333  33344 88899999988554


Q ss_pred             hhhhhccCCCC-hhhhhhccHHHHHHHHHHH
Q 013316          411 LDLRLSFDCLD-TDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       411 ~~~~~~~~~~~-~~~~~~i~~~d~~~a~~~~  440 (445)
                      ...    ...+ .....+|+.+=|.+-+..+
T Consensus       407 iSF----eA~d~~g~~v~Id~~yV~~~l~~l  433 (444)
T COG1220         407 ISF----EAPDMSGQKVTIDAEYVEEKLGDL  433 (444)
T ss_pred             hCc----cCCcCCCCeEEEcHHHHHHHHHHH
Confidence            322    2222 3445678877777766554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.73  E-value=2.7e-17  Score=166.43  Aligned_cols=144  Identities=19%  Similarity=0.164  Sum_probs=104.6

Q ss_pred             CCccCccCCC-CCchHhHHHHHcC---CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc---HHHHHHhhcCCCC-
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGN-   73 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~-   73 (445)
                      +.|++++..+ .|.||||+|+..+   +.++++.|+ +.|++++..+. .|.||||+|+..++   .+++++|++.+.+ 
T Consensus        97 ~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll-~~Gadvn~~d~-~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798         97 ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI-ENGADTTLLDK-DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH-HcCCCccccCC-CCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            4566666554 4666666666654   455555444 34666666665 56666666666655   5666665554210 


Q ss_pred             ---------------------------------C---------------------------------------Ccccccc
Q 013316           74 ---------------------------------D---------------------------------------KVELEAQ   81 (445)
Q Consensus        74 ---------------------------------~---------------------------------------g~~v~~~   81 (445)
                                                       .                                       ++++|.+
T Consensus       175 n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~  254 (489)
T PHA02798        175 NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQV  254 (489)
T ss_pred             ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCc
Confidence                                             0                                       1345667


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      |..|.||||+|+..|+.+++++|++.||+++.+|..|+||| +.|...++.++++.+++.+++....
T Consensus       255 d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL-~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        255 DELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCL-FTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             CcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHH-HHHHHcCcHHHHHHHHccCCCHHHH
Confidence            78899999999999999999999999999999999999999 7888899999999999888765543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.72  E-value=2.6e-17  Score=138.94  Aligned_cols=139  Identities=19%  Similarity=0.173  Sum_probs=124.3

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..+++|+.+++...+++.+..+.   ...+|..|. .|.|||.||+.+|+..+|++||+.    |+++++..++..++|.
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~---~n~VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~----GAdp~~lgk~resALs  198 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLV---NNKVNACDE-FGFTPLIWAAAKGHIPVVQFLLNS----GADPDALGKYRESALS  198 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHh---hccccCccc-cCchHhHHHHhcCchHHHHHHHHc----CCChhhhhhhhhhhHh
Confidence            36899999999999888765443   356889987 799999999999999999999995    9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                      +|++.|..++|++|+..+.|+|.-|.+|.||| .+|.+.++.++++.|+..|+++..-...+++....
T Consensus       199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpL-lyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdl  265 (296)
T KOG0502|consen  199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPL-LYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDL  265 (296)
T ss_pred             HHhcCChHHHHHHHHhcCCCcceeccCCCcee-eeeecCChHHHHHHHHhcCCCcccccccCCcHHHH
Confidence            99999999999999999999999999999999 89999999999999999999987776666555443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.72  E-value=1.4e-17  Score=174.51  Aligned_cols=137  Identities=35%  Similarity=0.457  Sum_probs=116.6

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhh--------------------------------CCCCcCCCCCCCC
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRE--------------------------------NPSLLNERNPVMA   48 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~--------------------------------~~~~~~~~~~~~g   48 (445)
                      ++|.++|... .|.||||.|+..|+.+.+..++..                                ++.+++.++. .|
T Consensus       462 ~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~-r~  540 (1143)
T KOG4177|consen  462 QYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTG-RG  540 (1143)
T ss_pred             hcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcc-cc
Confidence            4677777766 688888888888888777766552                                3566666666 68


Q ss_pred             ChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC
Q 013316           49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG  128 (445)
Q Consensus        49 ~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~  128 (445)
                      .||||+||.+|+.++|++||++    |++++.++..|+||||.||..|+.+|+.+|+++||++|..|.+|.||| +.+..
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~----gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL-~iA~~  615 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEH----GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPL-HIAVR  615 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhC----CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchh-HHHHH
Confidence            8999999999999999999995    889999999999999999999999999999999999999999999999 88899


Q ss_pred             CCChHHHHHHHhhhhh
Q 013316          129 PGSAKLRELLLWHSEE  144 (445)
Q Consensus       129 ~~~~~i~~~ll~~~~~  144 (445)
                      .++..++++++..++.
T Consensus       616 lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  616 LGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             hcccchhhHHHhccCc
Confidence            9999999999888877

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.72  E-value=1.8e-16  Score=168.43  Aligned_cols=219  Identities=19%  Similarity=0.314  Sum_probs=153.4

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  241 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~  241 (445)
                      .++..|.+ ++||+.+++.|.+.+...       ..++....++...+||+||||||||++|+++|+.+...    ..++
T Consensus       502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~----~~~~  570 (821)
T CHL00095        502 HMEETLHKRIIGQDEAVVAVSKAIRRA-------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS----EDAM  570 (821)
T ss_pred             HHHHHhcCcCcChHHHHHHHHHHHHHH-------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC----ccce
Confidence            34555544 999999998888755422       23333333344568999999999999999999988532    2267


Q ss_pred             EEeeccccc---------c---cccCCch-hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc
Q 013316          242 TEVQRTDLV---------G---EFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK  308 (445)
Q Consensus       242 ~~~~~~~l~---------~---~~~g~~~-~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~  308 (445)
                      +.++.+.+.         +   .|+|+.. ..+...+...+.+||+|||||++++           ++++.|++.+++++
T Consensus       571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~  639 (821)
T CHL00095        571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGR  639 (821)
T ss_pred             EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCc
Confidence            777766542         1   1455433 4566777777889999999999987           88999999998743


Q ss_pred             -------------EEEEEecCchhH-----------------------HHH---------HhhCcccccccccceeCCCC
Q 013316          309 -------------VVVIFAGYSEPM-----------------------KRV---------IASNEGFCRRVTKFFHFNDF  343 (445)
Q Consensus       309 -------------~~~i~a~~~~~~-----------------------~~~---------~~~~~~l~~R~~~~i~~~~~  343 (445)
                                   .++|++++....                       ..+         -.-.|+|++|+|.+|.|.++
T Consensus       640 ~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL  719 (821)
T CHL00095        640 LTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQL  719 (821)
T ss_pred             eecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCC
Confidence                         466666543211                       000         00137899999999999999


Q ss_pred             CHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          344 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       344 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      +.+++.+|++..+.+...++...++.+  .++++++..+....+.   ...| +|-++.++++.+.
T Consensus       720 ~~~~l~~Iv~~~l~~l~~rl~~~~i~l--~~~~~~~~~La~~~~~---~~~G-AR~l~r~i~~~i~  779 (821)
T CHL00095        720 TKNDVWEIAEIMLKNLFKRLNEQGIQL--EVTERIKTLLIEEGYN---PLYG-ARPLRRAIMRLLE  779 (821)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCcEE--EECHHHHHHHHHhcCC---CCCC-hhhHHHHHHHHHH
Confidence            999999999999998766665554443  6788888877765332   2234 7888888877764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.72  E-value=4.7e-17  Score=164.50  Aligned_cols=153  Identities=22%  Similarity=0.220  Sum_probs=101.4

Q ss_pred             CCccCccCCC-CCchHhHHHH--HcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC--------------------
Q 013316            2 QKNQDRRSRS-AKPATIHGCA--QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY--------------------   58 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~--------------------   58 (445)
                      +.|++++..+ .|.||||+|+  ..++.++++.|+. .|++++..+. .|.||||+|+..                    
T Consensus       105 ~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~-~gad~~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~  182 (471)
T PHA03095        105 KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDL-YGMTPLAVLLKSRNANVELLRLLIDAGADVYA  182 (471)
T ss_pred             HcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH-cCCCCCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc
Confidence            3455555554 2566666665  3344555554443 3455555443 455555544433                    


Q ss_pred             -----------------CcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCH--HHHHHHHhcCCCCcccccCCC
Q 013316           59 -----------------NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN--EAAKLLLAHGAFIEAKANEGK  119 (445)
Q Consensus        59 -----------------g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~--~~~~~Ll~~ga~~~~~~~~g~  119 (445)
                                       ++.+++++|++.    |++++.+|..|.||||+|+..|+.  .++..|+..|++++.+|..|+
T Consensus       183 ~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~----g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~  258 (471)
T PHA03095        183 VDDRFRSLLHHHLQSFKPRARIVRELIRA----GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ  258 (471)
T ss_pred             cCCCCCCHHHHHHHHCCCcHHHHHHHHHc----CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCC
Confidence                             334455555553    667777777788888888877764  567788888999999999999


Q ss_pred             ChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhH
Q 013316          120 TPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKM  161 (445)
Q Consensus       120 tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~  161 (445)
                      ||| |+|+..++.+++++|+.+|+++..++..+.++...+..
T Consensus       259 TpL-h~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        259 TPL-HYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             CHH-HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            999 77888888999999999999888877777666655533

>PLN03025 replication factor C subunit; Provisional

Probab=99.72  E-value=1.7e-16  Score=151.23  Aligned_cols=181  Identities=21%  Similarity=0.242  Sum_probs=122.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|+++++..|+.++.                ....++++|+||||||||++|+++|+.+...+.  ...+++++.
T Consensus        11 ~l~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~eln~   72 (319)
T PLN03025         11 KLDDIVGNEDAVSRLQVIAR----------------DGNMPNLILSGPPGTGKTTSILALAHELLGPNY--KEAVLELNA   72 (319)
T ss_pred             CHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC--ccceeeecc
Confidence            57889999999888887543                223458999999999999999999999854321  124667777


Q ss_pred             ccccccccCCchhHHHHHHH---H-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEe
Q 013316          247 TDLVGEFVGHTGPKTRRRIK---E-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA  314 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~---~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a  314 (445)
                      ++..+      ...++..++   +       ....|++|||+|.+..           ..++.|+..|+.  ....+|++
T Consensus        73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~aq~aL~~~lE~~~~~t~~il~  135 (319)
T PLN03025         73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------GAQQALRRTMEIYSNTTRFALA  135 (319)
T ss_pred             ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------HHHHHHHHHHhcccCCceEEEE
Confidence            65422      112333221   1       2347999999999976           556777777764  33344444


Q ss_pred             cCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          315 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ++...  .   ..++|++|+ ..++|++|+.+++...++..+++..           ..++++++..++ ..++      
T Consensus       136 ~n~~~--~---i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg-----------i~i~~~~l~~i~-~~~~------  191 (319)
T PLN03025        136 CNTSS--K---IIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK-----------VPYVPEGLEAII-FTAD------  191 (319)
T ss_pred             eCCcc--c---cchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHcC------
Confidence            44322  1   257899998 7899999999999999998887642           245567777555 4453      


Q ss_pred             cCchhhHHHHHH
Q 013316          395 MNGGLVDPMLVN  406 (445)
Q Consensus       395 ~n~r~l~~~~~~  406 (445)
                      |+.|.+.+.++.
T Consensus       192 gDlR~aln~Lq~  203 (319)
T PLN03025        192 GDMRQALNNLQA  203 (319)
T ss_pred             CCHHHHHHHHHH
Confidence            444555555653

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.72  E-value=2.5e-16  Score=158.71  Aligned_cols=188  Identities=17%  Similarity=0.201  Sum_probs=132.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------  239 (445)
                      ..|++|+|++.+++.|+.++..               ...+..+||+||+|||||++|+++++.+.+.......      
T Consensus        13 ~tFddIIGQe~vv~~L~~ai~~---------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~   77 (709)
T PRK08691         13 KTFADLVGQEHVVKALQNALDE---------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ   77 (709)
T ss_pred             CCHHHHcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence            4688999999999999886542               2345568999999999999999999998764321111      


Q ss_pred             -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                 .+++++.++      +.....++.+++.+       +..|+||||+|.+..           ..++.|+
T Consensus        78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALL  140 (709)
T PRK08691         78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAML  140 (709)
T ss_pred             HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHH
Confidence                       122222211      11234566666543       457999999998865           6788899


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  +.+.+|++++....     +.+.+++|| ..+.|+.++.+++...+.+.+.+..           ..++.+++
T Consensus       141 KtLEEPp~~v~fILaTtd~~k-----L~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg-----------i~id~eAL  203 (709)
T PRK08691        141 KTLEEPPEHVKFILATTDPHK-----VPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK-----------IAYEPPAL  203 (709)
T ss_pred             HHHHhCCCCcEEEEEeCCccc-----cchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHH
Confidence            99986  56667776654322     146788998 8999999999999999999888642           24566777


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ..+. +.+      .|+.|.+.+++++++.
T Consensus       204 ~~Ia-~~A------~GslRdAlnLLDqaia  226 (709)
T PRK08691        204 QLLG-RAA------AGSMRDALSLLDQAIA  226 (709)
T ss_pred             HHHH-HHh------CCCHHHHHHHHHHHHH
Confidence            6444 555      4677788888888754

>PHA02946 ankyin-like protein; Provisional

Probab=99.71  E-value=3.4e-17  Score=162.71  Aligned_cols=150  Identities=15%  Similarity=0.213  Sum_probs=122.7

Q ss_pred             CCCccCccCCC-CCchHhHHHHHcCC--HHHHHHHHhhCCCCcCCC-CCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCc
Q 013316            1 MQKNQDRRSRS-AKPATIHGCAQSGD--LLAFQRLLRENPSLLNER-NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV   76 (445)
Q Consensus         1 l~~~~~~~~~~-~~~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~   76 (445)
                      ++.|++++..+ .|.||||+|+..++  .++++.|+ ..|+++|.. +. .|.|||| ||..++.+++++|++.    |+
T Consensus        92 L~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~Gadin~~~d~-~g~tpL~-aa~~~~~~vv~~Ll~~----ga  164 (446)
T PHA02946         92 LTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV-QYGAKINNSVDE-EGCGPLL-ACTDPSERVFKKIMSI----GF  164 (446)
T ss_pred             HHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCcccccCC-CCCcHHH-HHHCCChHHHHHHHhc----cc
Confidence            35789999876 69999999988764  67777665 578999864 54 7999998 6667899999999995    88


Q ss_pred             ccccccCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCcccccCCCChhhhhhcCC--CChHHHHHHHhhhhhHHhhhhhh
Q 013316           77 ELEAQNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP--GSAKLRELLLWHSEEQRKRRALE  152 (445)
Q Consensus        77 ~v~~~d~~g~tpLh~A~~~g--~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~--~~~~i~~~ll~~~~~~~~~~~~~  152 (445)
                      +++.+|..|.||||+|+..+  +.+++++|++.|++++.+|.+|+||| |+|+..  +..+++++|+. +++.+.++..+
T Consensus       165 d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpL-H~Aa~~~~~~~~iv~lLl~-gadin~~d~~G  242 (446)
T PHA02946        165 EARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPL-HIVCSKTVKNVDIINLLLP-STDVNKQNKFG  242 (446)
T ss_pred             cccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence            99999999999999988754  46899999999999999999999999 555554  36788888885 78887777777


Q ss_pred             hhhhhHH
Q 013316          153 ACSETKA  159 (445)
Q Consensus       153 ~~~~~~a  159 (445)
                      .++...+
T Consensus       243 ~TpLh~A  249 (446)
T PHA02946        243 DSPLTLL  249 (446)
T ss_pred             CCHHHHH
Confidence            7776544

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.71  E-value=4.2e-16  Score=157.02  Aligned_cols=187  Identities=19%  Similarity=0.201  Sum_probs=131.3

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCe-eEeecCCCCchhHHHHHHHHHHHHcCCCC-------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILP-------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------  237 (445)
                      ..|++++|++.+++.|+.++.                .+...| +||+||+|||||++|+++|+.+.+.....       
T Consensus        10 ~~f~eivGq~~i~~~L~~~i~----------------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C   73 (584)
T PRK14952         10 ATFAEVVGQEHVTEPLSSALD----------------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC   73 (584)
T ss_pred             CcHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence            468899999999999888654                223445 79999999999999999999987632110       


Q ss_pred             ------------CCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHH
Q 013316          238 ------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALE  298 (445)
Q Consensus       238 ------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~  298 (445)
                                  ...+++++.++..      .-..++++.+.       +.+.|+||||+|.+..           .+++
T Consensus        74 ~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N  136 (584)
T PRK14952         74 ESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN  136 (584)
T ss_pred             HHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence                        1123333332210      12334443322       3568999999999976           6889


Q ss_pred             HHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316          299 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  376 (445)
Q Consensus       299 ~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~  376 (445)
                      .|++.|++  ..+++|++|+...  .+   .+++++|+ ..++|..++.+++.+.+...+.+..           ..+++
T Consensus       137 ALLK~LEEpp~~~~fIL~tte~~--kl---l~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg-----------i~i~~  199 (584)
T PRK14952        137 ALLKIVEEPPEHLIFIFATTEPE--KV---LPTIRSRT-HHYPFRLLPPRTMRALIARICEQEG-----------VVVDD  199 (584)
T ss_pred             HHHHHHhcCCCCeEEEEEeCChH--hh---HHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence            99999987  6788888776543  22   57889997 8999999999999999998887642           23555


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      +++. ++...+      .|+.|.+.+++++++.
T Consensus       200 ~al~-~Ia~~s------~GdlR~aln~Ldql~~  225 (584)
T PRK14952        200 AVYP-LVIRAG------GGSPRDTLSVLDQLLA  225 (584)
T ss_pred             HHHH-HHHHHc------CCCHHHHHHHHHHHHh
Confidence            6665 445555      4566677777877643

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.71  E-value=5.6e-16  Score=154.68  Aligned_cols=188  Identities=14%  Similarity=0.201  Sum_probs=129.5

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------  239 (445)
                      ..|++++|++.+++.|...+..               ...+..+||+||||||||++|+.+|+.+.+.......      
T Consensus        13 ~~f~diiGq~~~v~~L~~~i~~---------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~   77 (546)
T PRK14957         13 QSFAEVAGQQHALNSLVHALET---------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE   77 (546)
T ss_pred             CcHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence            4688899999999888876542               1234458899999999999999999988753221111      


Q ss_pred             -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                 .+++++.+.-    .  ....++++++.+       ...|+||||+|.+..           ..++.|+
T Consensus        78 sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLL  140 (546)
T PRK14957         78 NCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALL  140 (546)
T ss_pred             HHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHH
Confidence                       2222322110    1  122344444332       457999999998876           7889999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  +.+++|++|+..  ..+   .+.+++|+ ..++|.+++.+++...+...+.+..           ..++++++
T Consensus       141 K~LEepp~~v~fIL~Ttd~--~ki---l~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg-----------i~~e~~Al  203 (546)
T PRK14957        141 KTLEEPPEYVKFILATTDY--HKI---PVTILSRC-IQLHLKHISQADIKDQLKIILAKEN-----------INSDEQSL  203 (546)
T ss_pred             HHHhcCCCCceEEEEECCh--hhh---hhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99997  567777776542  222   46689999 9999999999999999998887641           24566676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      . ++...+      .|+.|.+.+.++.++.
T Consensus       204 ~-~Ia~~s------~GdlR~alnlLek~i~  226 (546)
T PRK14957        204 E-YIAYHA------KGSLRDALSLLDQAIS  226 (546)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence            6 444555      4566677777887753

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.71  E-value=4.8e-17  Score=161.01  Aligned_cols=138  Identities=26%  Similarity=0.385  Sum_probs=115.4

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCC--------------CcCCCCCCCCChHHHHHHhCCcHHHHHHh
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPS--------------LLNERNPVMAQTPLHVSAGYNKAEIVKSL   67 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~--------------~~~~~~~~~g~tpLh~A~~~g~~~iv~~L   67 (445)
                      ++.++|..+ .+.+|||.|+..|+.++++..|.....              -+|..|+ +|.||||+||+.|+++.+..|
T Consensus       214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~-dg~tpLH~a~r~G~~~svd~L  292 (929)
T KOG0510|consen  214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN-DGCTPLHYAARQGGPESVDNL  292 (929)
T ss_pred             hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc-cCCchHHHHHHcCChhHHHHH
Confidence            455666655 689999999999999999988864322              2344565 799999999999999999999


Q ss_pred             hcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh-cCC-CCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316           68 LEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGA-FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  145 (445)
Q Consensus        68 l~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~-~ga-~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~  145 (445)
                      +..    |++++.++.++.||||.||++|+.++|+.|++ .|. ..+..|..|.||| |+|...++..++++|+..|+..
T Consensus       293 l~~----Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL-Hlaa~~gH~~v~qlLl~~GA~~  367 (929)
T KOG0510|consen  293 LGF----GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL-HLAAKSGHDRVVQLLLNKGALF  367 (929)
T ss_pred             HHc----CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch-hhhhhcCHHHHHHHHHhcChhh
Confidence            995    89999999999999999999999999999997 544 4678899999999 8888999999999999999876


Q ss_pred             H
Q 013316          146 R  146 (445)
Q Consensus       146 ~  146 (445)
                      .
T Consensus       368 ~  368 (929)
T KOG0510|consen  368 L  368 (929)
T ss_pred             h
Confidence            6

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.71  E-value=5.5e-17  Score=170.96  Aligned_cols=150  Identities=21%  Similarity=0.208  Sum_probs=129.2

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC-cHHHHHHhhcCCCCCCcccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      +.|++++..+ .|.||||+||..|+...+..+|...|++++..+. .|+||||+|+..| +.+++++|+..    |++++
T Consensus       261 ~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~-~g~TpLh~Aa~~g~~~~~v~~Ll~~----gadin  335 (682)
T PHA02876        261 DAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI-KGETPLYLMAKNGYDTENIRTLIML----GADVN  335 (682)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCCCHHHHHHHHHc----CCCCC
Confidence            4677887766 6999999999999986555666678999999987 7999999999999 58999999985    88999


Q ss_pred             cccCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           80 AQNMYGETPLHMAAKN-GCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~-g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      .+|..|.||||+|+.. ++.+++.+|++.|++++.+|..|.||| |+|+..++.+++++|++++++.......+.++..
T Consensus       336 ~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpL-h~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh  413 (682)
T PHA02876        336 AADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI-HYAAVRNNVVIINTLLDYGADIEALSQKIGTALH  413 (682)
T ss_pred             CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCccccCCCCCchHH
Confidence            9999999999999985 578899999999999999999999999 7788889999999999999887765544444433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.70  E-value=8.8e-17  Score=162.23  Aligned_cols=141  Identities=15%  Similarity=0.116  Sum_probs=115.9

Q ss_pred             CCCccCccCCCCCchHhHHHHHcCC----HHHHHHHHhhCC-CCcCCCCCCCCChHHHH---HHhCC---------cHHH
Q 013316            1 MQKNQDRRSRSAKPATIHGCAQSGD----LLAFQRLLRENP-SLLNERNPVMAQTPLHV---SAGYN---------KAEI   63 (445)
Q Consensus         1 l~~~~~~~~~~~~~t~L~~A~~~g~----~~~v~~ll~~~~-~~~~~~~~~~g~tpLh~---A~~~g---------~~~i   63 (445)
                      ++.||+.+....|.||||+|+..++    .++++.|+...+ .++|..+. .|.||||.   |...+         ..++
T Consensus       366 Is~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~-~G~T~Lh~~i~a~~~n~~~~~~e~~~~~i  444 (672)
T PHA02730        366 LDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSN-NGRLCMYGLILSRFNNCGYHCYETILIDV  444 (672)
T ss_pred             HHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccccc-CCCchHhHHHHHHhccccccccchhHHHH
Confidence            3579999988889999999998875    799988876433 26888887 79999984   33232         2356


Q ss_pred             HHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccc-CCCChhhhhhcC-CCChHHHHHHHhh
Q 013316           64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-EGKTPLDHLSNG-PGSAKLRELLLWH  141 (445)
Q Consensus        64 v~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~a~~-~~~~~i~~~ll~~  141 (445)
                      +++|+.+    |+++|.+|..|.||||+|+..++.+++++|+++||+++.++. .|.||+++++.. .++.+++++|+++
T Consensus       445 vk~LIs~----GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~  520 (672)
T PHA02730        445 FDILSKY----MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY  520 (672)
T ss_pred             HHHHHhc----ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc
Confidence            9999995    899999999999999999999999999999999999999997 599999544432 4678999999999


Q ss_pred             hhhHH
Q 013316          142 SEEQR  146 (445)
Q Consensus       142 ~~~~~  146 (445)
                      +++..
T Consensus       521 ga~i~  525 (672)
T PHA02730        521 HPTLE  525 (672)
T ss_pred             CCCHH
Confidence            87643

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.70  E-value=7.1e-16  Score=148.90  Aligned_cols=188  Identities=21%  Similarity=0.235  Sum_probs=124.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.+.+++.                .+..++++|+||||||||++|+++++.+....  ...+++.+++
T Consensus        13 ~~~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~--~~~~~~~i~~   74 (337)
T PRK12402         13 LLEDILGQDEVVERLSRAVD----------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDP--WENNFTEFNV   74 (337)
T ss_pred             cHHHhcCCHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc--cccceEEech
Confidence            47789999999988887543                22345899999999999999999999886422  1225777887


Q ss_pred             ccccccc-------------cCC-------chhHHHHHHHH--------ccCcEEEEcCccccccCCCCCCchhHHHHHH
Q 013316          247 TDLVGEF-------------VGH-------TGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALE  298 (445)
Q Consensus       247 ~~l~~~~-------------~g~-------~~~~~~~~~~~--------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~  298 (445)
                      +++....             .+.       ....++.++..        +...+|||||+|.+.+           ..++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~  143 (337)
T PRK12402         75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQ  143 (337)
T ss_pred             hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHH
Confidence            7653221             010       01122333222        2347999999998864           3445


Q ss_pred             HHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316          299 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  376 (445)
Q Consensus       299 ~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~  376 (445)
                      .|...++.  ....+|++++...  .   ..++|++|+ ..+.|++|+.+++..+++..+.+..           ..+++
T Consensus       144 ~L~~~le~~~~~~~~Il~~~~~~--~---~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~  206 (337)
T PRK12402        144 ALRRIMEQYSRTCRFIIATRQPS--K---LIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEG-----------VDYDD  206 (337)
T ss_pred             HHHHHHHhccCCCeEEEEeCChh--h---CchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence            56666553  2234444444322  1   256788897 7899999999999999998877642           24667


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          377 DAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      +++..+.. .+      ++|.|.+.+.++.+
T Consensus       207 ~al~~l~~-~~------~gdlr~l~~~l~~~  230 (337)
T PRK12402        207 DGLELIAY-YA------GGDLRKAILTLQTA  230 (337)
T ss_pred             HHHHHHHH-Hc------CCCHHHHHHHHHHH
Confidence            78776654 43      57777777777655

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=1.1e-16  Score=122.67  Aligned_cols=89  Identities=40%  Similarity=0.516  Sum_probs=79.2

Q ss_pred             hHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcC
Q 013316           17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG   96 (445)
Q Consensus        17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g   96 (445)
                      ||+||..|+.++++.|+. .+.+++.     |.||||+|+.+|+.+++++|++.    |++++.+|..|+||||+|+..|
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL-----GNTALHYAAENGNLEIVKLLLEN----GADINSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHT----TTCTT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHh----cccccccCCCCCCHHHHHHHcC
Confidence            799999999999999987 5555554     67999999999999999999995    8899999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccc
Q 013316           97 CNEAAKLLLAHGAFIEAKA  115 (445)
Q Consensus        97 ~~~~~~~Ll~~ga~~~~~~  115 (445)
                      +.+++++|+++|++++.+|
T Consensus        71 ~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   71 NLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHHHHTTT-TTSS-
T ss_pred             CHHHHHHHHHcCCCCCCcC
Confidence            9999999999999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.70  E-value=1.7e-16  Score=164.94  Aligned_cols=102  Identities=31%  Similarity=0.451  Sum_probs=88.7

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 013316           15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK   94 (445)
Q Consensus        15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~   94 (445)
                      ..|+.|+..|+.+.++.|+. .++++|..+. .|+||||+||.+|+.+++++|+++    |++++.+|..|.||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~d~-~G~TpLh~Aa~~g~~eiv~~LL~~----Gadvn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT-GGADPNCRDY-DGRTPLHIACANGHVQVVRVLLEF----GADPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC-CCCcHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            45888999999999887764 6788898886 799999999999999999999985    88899999999999999999


Q ss_pred             cCCHHHHHHHHhc-------CCCCcccccCCCChh
Q 013316           95 NGCNEAAKLLLAH-------GAFIEAKANEGKTPL  122 (445)
Q Consensus        95 ~g~~~~~~~Ll~~-------ga~~~~~~~~g~tpl  122 (445)
                      .|+.+++++|+.+       |++++..+..|.+|+
T Consensus       158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~  192 (664)
T PTZ00322        158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS  192 (664)
T ss_pred             CCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence            9999999999988       888887777777776

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.70  E-value=8e-16  Score=155.89  Aligned_cols=188  Identities=18%  Similarity=0.258  Sum_probs=131.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------  236 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---------  236 (445)
                      ..|++++|++.+++.+.+++..               ...+..+||+||+|||||++|+.+|+.+.+....         
T Consensus        13 ~~f~~viGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~   77 (559)
T PRK05563         13 QTFEDVVGQEHITKTLKNAIKQ---------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE   77 (559)
T ss_pred             CcHHhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence            4688999999999999886542               1234458899999999999999999998764311         


Q ss_pred             --------CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          237 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       237 --------~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                              ....++++++++      +.+...++.+.+.+       ++.|+||||+|.+..           .+++.|+
T Consensus        78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL  140 (559)
T PRK05563         78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL  140 (559)
T ss_pred             HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence                    112344444322      11234455655543       458999999999975           6788999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.+++  ..+++|++|+..  ..   ..+.+++|+ ..+.|++|+.+++...++..+++..           ..++++++
T Consensus       141 KtLEepp~~~ifIlatt~~--~k---i~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~eg-----------i~i~~~al  203 (559)
T PRK05563        141 KTLEEPPAHVIFILATTEP--HK---IPATILSRC-QRFDFKRISVEDIVERLKYILDKEG-----------IEYEDEAL  203 (559)
T ss_pred             HHhcCCCCCeEEEEEeCCh--hh---CcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99986  456777776543  22   267889998 7899999999999999998887641           23455666


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      . .+...+      .|+.|.+.+.+++++.
T Consensus       204 ~-~ia~~s------~G~~R~al~~Ldq~~~  226 (559)
T PRK05563        204 R-LIARAA------EGGMRDALSILDQAIS  226 (559)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence            6 444555      4566667777777643

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.70  E-value=2.2e-17  Score=141.18  Aligned_cols=124  Identities=27%  Similarity=0.380  Sum_probs=92.9

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      |+|.++.++++.+.++.+              +..+.+|||+|++||||+.+|++||..+.+    ...||+.++|+.+.
T Consensus         1 liG~s~~m~~~~~~~~~~--------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r----~~~pfi~vnc~~~~   62 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRA--------------ASSDLPVLITGETGTGKELLARAIHNNSPR----KNGPFISVNCAALP   62 (168)
T ss_dssp             SS--SHHHHHHHHHHHHH--------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTT----TTS-EEEEETTTS-
T ss_pred             CEeCCHHHHHHHHHHHHH--------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhc----ccCCeEEEehhhhh
Confidence            578899988888877766              567789999999999999999999997665    34599999999854


Q ss_pred             -----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013316          251 -----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------  307 (445)
Q Consensus       251 -----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------  307 (445)
                           ..+||+..       .....+|+.|.+|+||||||+.|.+           .+|..|++.++++           
T Consensus        63 ~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~  131 (168)
T PF00158_consen   63 EELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPV  131 (168)
T ss_dssp             HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEE
T ss_pred             cchhhhhhhccccccccccccccCCceeeccceEEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccc
Confidence                 34677532       1234799999999999999988887           8899999999752           


Q ss_pred             --cEEEEEecCchhHHHH
Q 013316          308 --KVVVIFAGYSEPMKRV  323 (445)
Q Consensus       308 --~~~~i~a~~~~~~~~~  323 (445)
                        ++.+|++|+.+....+
T Consensus       132 ~~~~RiI~st~~~l~~~v  149 (168)
T PF00158_consen  132 PVDVRIIASTSKDLEELV  149 (168)
T ss_dssp             E--EEEEEEESS-HHHHH
T ss_pred             cccceEEeecCcCHHHHH
Confidence              4688888877665543

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PHA02795 ankyrin-like protein; Provisional

Probab=99.70  E-value=6.6e-17  Score=155.79  Aligned_cols=149  Identities=11%  Similarity=0.008  Sum_probs=126.4

Q ss_pred             CCccCcc-------CCCCCchHhHHHHH--cCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC
Q 013316            2 QKNQDRR-------SRSAKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG   72 (445)
Q Consensus         2 ~~~~~~~-------~~~~~~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~   72 (445)
                      .+|++++       ..+.++|+||+++.  .|+.++++.|+ .+|++++..+   +.||||+|+..++.+++++|+++  
T Consensus        98 s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~~---~~t~lh~A~~~~~~eIVk~Lls~--  171 (437)
T PHA02795         98 SKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKIE---CLNAYFRGICKKESSVVEFILNC--  171 (437)
T ss_pred             hcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCCC---CCCHHHHHHHcCcHHHHHHHHhc--
Confidence            3566655       33468999999999  89999999777 5799998854   57999999999999999999997  


Q ss_pred             CCCcc-cccc-----cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316           73 NDKVE-LEAQ-----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  146 (445)
Q Consensus        73 ~~g~~-v~~~-----d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~  146 (445)
                        |++ .+..     +..+.||+|.|+..++.+++++|+++||+++.+|..|.||| |+|+..++.+++++|+++|++..
T Consensus       172 --Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpL-h~Aa~~g~~eiVelLL~~GAdIN  248 (437)
T PHA02795        172 --GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLL-YRAIYAGYIDLVSWLLENGANVN  248 (437)
T ss_pred             --CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCC
Confidence              432 2222     24578999999999999999999999999999999999999 88888999999999999999998


Q ss_pred             hhhhhhhhhhhHH
Q 013316          147 KRRALEACSETKA  159 (445)
Q Consensus       147 ~~~~~~~~~~~~a  159 (445)
                      .++..+.++...+
T Consensus       249 ~~d~~G~TpLh~A  261 (437)
T PHA02795        249 AVMSNGYTCLDVA  261 (437)
T ss_pred             CcCCCCCCHHHHH
Confidence            8887777776655

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.70  E-value=5.9e-17  Score=154.00  Aligned_cols=155  Identities=28%  Similarity=0.368  Sum_probs=133.2

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC-------
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN-------   73 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-------   73 (445)
                      .+|++++..+ .|.|+||.||...+.++|++++ .++.+||..|. .||||||.|+..||..++++|+.++..       
T Consensus        61 ~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~-e~wtPlhaaascg~~~i~~~li~~gA~~~avNsd  138 (527)
T KOG0505|consen   61 NRGASPNLCNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDN-EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSD  138 (527)
T ss_pred             ccCCCccccCCccchhHHHHHhcccHHHHHHHH-HhcCCcccccc-ccCCcchhhcccccHHHHHHHHHhhhhhhhccCC
Confidence            4567777777 7999999999999999999777 57999999998 799999999999999999999998541       


Q ss_pred             ------------------------------------------------CCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 013316           74 ------------------------------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLL  105 (445)
Q Consensus        74 ------------------------------------------------~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll  105 (445)
                                                                      .|...++.+..|-|.||+|+..|..++..+|+
T Consensus       139 g~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl  218 (527)
T KOG0505|consen  139 GNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLL  218 (527)
T ss_pred             CCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHH
Confidence                                                            12222333344899999999999999999999


Q ss_pred             hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          106 AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       106 ~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      .+|.+++++|.+||||| |+++.++..+++++|..++++....+..+.++....
T Consensus       219 ~ag~~~~~~D~dgWtPl-HAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  219 QAGYSVNIKDYDGWTPL-HAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             HhccCcccccccCCCcc-cHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccch
Confidence            99999999999999999 999999999999999999999888877666665433

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.70  E-value=3e-17  Score=148.49  Aligned_cols=125  Identities=23%  Similarity=0.311  Sum_probs=111.5

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC-----CcHHHHHHhhcCCCCCCccccccc-CC
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-----NKAEIVKSLLEWPGNDKVELEAQN-MY   84 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~-----g~~~iv~~Ll~~~~~~g~~v~~~d-~~   84 (445)
                      ..|+|+|||++.++|+++|+.||....++++.++. -|.||+++|+..     .+.++|.-|.++     .|||++- ..
T Consensus       266 sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr-AGYtpiMLaALA~lk~~~d~~vV~~LF~m-----gnVNaKAsQ~  339 (452)
T KOG0514|consen  266 SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR-AGYTPVMLAALAKLKQPADRTVVERLFKM-----GDVNAKASQH  339 (452)
T ss_pred             CCCCeeeeeeecccchHHHHHHhccCccccccccc-ccccHHHHHHHHhhcchhhHHHHHHHHhc-----cCcchhhhhh
Confidence            37999999999999999999999999999999997 799999998643     356788888886     4788764 45


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        85 g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      |+|+|++|+.+|+.++|+.|+.+|||+|++|.+|.|+| .+|+..|+.+++++|+..-
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTAL-MCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTAL-MCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHH-hhhhhhChHHHHHHHhccC
Confidence            99999999999999999999999999999999999999 9999999999999998655

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.70  E-value=9.1e-16  Score=155.10  Aligned_cols=187  Identities=18%  Similarity=0.191  Sum_probs=129.8

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC-----CC--
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-----PT--  238 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~-----~~--  238 (445)
                      ..|++++|++.+++.|.+++..               ...+..+||+||+|||||++|+++|+.+.+.+..     ..  
T Consensus        13 ~~f~dviGQe~vv~~L~~~l~~---------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p   77 (618)
T PRK14951         13 RSFSEMVGQEHVVQALTNALTQ---------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP   77 (618)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence            4688899999999999886542               1234456999999999999999999999763210     00  


Q ss_pred             ---------------CCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHH
Q 013316          239 ---------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA  296 (445)
Q Consensus       239 ---------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~  296 (445)
                                     ..+++++.++-      ..-..++++++.+       ++.|++|||+|.+..           ..
T Consensus        78 Cg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a  140 (618)
T PRK14951         78 CGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TA  140 (618)
T ss_pred             CCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HH
Confidence                           01223322210      1223566666543       357999999999986           67


Q ss_pred             HHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcc
Q 013316          297 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC  374 (445)
Q Consensus       297 ~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~  374 (445)
                      ++.|++.+++  ..+++|++|+....  +   -+.+++|+ ..++|..++.+++.+.++..+.+..           ..+
T Consensus       141 ~NaLLKtLEEPP~~~~fIL~Ttd~~k--i---l~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg-----------i~i  203 (618)
T PRK14951        141 FNAMLKTLEEPPEYLKFVLATTDPQK--V---PVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAEN-----------VPA  203 (618)
T ss_pred             HHHHHHhcccCCCCeEEEEEECCchh--h---hHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence            8999999987  55677776654332  2   45689998 9999999999999999998887642           245


Q ss_pred             cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      +++++..++ ..+      .|+.|.+.+++++++
T Consensus       204 e~~AL~~La-~~s------~GslR~al~lLdq~i  230 (618)
T PRK14951        204 EPQALRLLA-RAA------RGSMRDALSLTDQAI  230 (618)
T ss_pred             CHHHHHHHH-HHc------CCCHHHHHHHHHHHH
Confidence            666776444 555      455666667777664

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=7.3e-16  Score=154.68  Aligned_cols=186  Identities=20%  Similarity=0.266  Sum_probs=126.0

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  238 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-------  238 (445)
                      ..|++|+|++.+++.|.+.+..               ...+..+||+||||||||++|+.+|+.+.+......       
T Consensus        13 ~sf~dIiGQe~v~~~L~~ai~~---------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~   77 (624)
T PRK14959         13 QTFAEVAGQETVKAILSRAAQE---------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE   77 (624)
T ss_pred             CCHHHhcCCHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence            4678899999999888886542               223568999999999999999999999976321111       


Q ss_pred             ----------CCeEEeecccccccccCCchhHHHHH---HH----HccCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          239 ----------DRVTEVQRTDLVGEFVGHTGPKTRRR---IK----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       239 ----------~~~~~~~~~~l~~~~~g~~~~~~~~~---~~----~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                ..+++++.+.-    .  .-..++.+   +.    .....||||||+|.+..           ..++.|+
T Consensus        78 sC~~i~~g~hpDv~eId~a~~----~--~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naLL  140 (624)
T PRK14959         78 QCRKVTQGMHVDVVEIDGASN----R--GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNALL  140 (624)
T ss_pred             HHHHHhcCCCCceEEEecccc----c--CHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHHH
Confidence                      11333332210    0  11222332   22    12457999999999975           6789999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  ..+++|++++.....     .+.+++|+ ..+.|++++.+++..++...+.+..           ..++.+++
T Consensus       141 k~LEEP~~~~ifILaTt~~~kl-----l~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~eg-----------i~id~eal  203 (624)
T PRK14959        141 KTLEEPPARVTFVLATTEPHKF-----PVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREG-----------VDYDPAAV  203 (624)
T ss_pred             HHhhccCCCEEEEEecCChhhh-----hHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99986  567777776643322     35688998 7899999999999999998776531           24566676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      . ++...+      .|+.|.+.++++++
T Consensus       204 ~-lIA~~s------~GdlR~Al~lLeql  224 (624)
T PRK14959        204 R-LIARRA------AGSVRDSMSLLGQV  224 (624)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHH
Confidence            6 455565      35556666666654

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.69  E-value=9.7e-16  Score=155.19  Aligned_cols=222  Identities=18%  Similarity=0.185  Sum_probs=142.3

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCee-EeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEEee
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHM-AFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEVQ  245 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v-ll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~~~  245 (445)
                      .|.|.++-.++|...+....            ....+.++ +++|+||||||++++.+.+.+...   ..+....++.++
T Consensus       756 ~LPhREeEIeeLasfL~paI------------kgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN  823 (1164)
T PTZ00112        756 YLPCREKEIKEVHGFLESGI------------KQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN  823 (1164)
T ss_pred             cCCChHHHHHHHHHHHHHHH------------hcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence            47888888888877665442            11234454 699999999999999999888532   122223678899


Q ss_pred             cccccc----------cccCC-------chhHHHHHHHHc----c-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316          246 RTDLVG----------EFVGH-------TGPKTRRRIKEA----E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV  303 (445)
Q Consensus       246 ~~~l~~----------~~~g~-------~~~~~~~~~~~a----~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~  303 (445)
                      |..+..          +++|.       +...+..+|...    . ..||+|||||.|..+++        +++-.|+..
T Consensus       824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------DVLYnLFR~  895 (1164)
T PTZ00112        824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------KVLFTLFDW  895 (1164)
T ss_pred             CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------HHHHHHHHH
Confidence            854321          22222       123344555543    1 25999999999987432        444444443


Q ss_pred             c--cCCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316          304 M--DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  380 (445)
Q Consensus       304 ~--~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~  380 (445)
                      .  ...++++|+.++...+  ....+|.+++||. ..|.|++|+.+|+.+||+..+...           ...++++++.
T Consensus       896 ~~~s~SKLiLIGISNdlDL--perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A-----------~gVLdDdAIE  962 (1164)
T PTZ00112        896 PTKINSKLVLIAISNTMDL--PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC-----------KEIIDHTAIQ  962 (1164)
T ss_pred             hhccCCeEEEEEecCchhc--chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC-----------CCCCCHHHHH
Confidence            2  2467888887764332  2234789999986 458999999999999999988753           1235666665


Q ss_pred             HHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          381 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                       +++...   ....|++|.+-.++++|.+.   +         +...|+.+||.+|+..+
T Consensus       963 -LIArkV---Aq~SGDARKALDILRrAgEi---k---------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112        963 -LCARKV---ANVSGDIRKALQICRKAFEN---K---------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred             -HHHHhh---hhcCCHHHHHHHHHHHHHhh---c---------CCCccCHHHHHHHHHHH
Confidence             554422   12246666667777777432   0         11278999999998764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.69  E-value=1.5e-16  Score=136.80  Aligned_cols=114  Identities=23%  Similarity=0.144  Sum_probs=96.6

Q ss_pred             CccCccCC-CCCchHhHHHHHcCCHHH---HHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316            3 KNQDRRSR-SAKPATIHGCAQSGDLLA---FQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL   78 (445)
Q Consensus         3 ~~~~~~~~-~~~~t~L~~A~~~g~~~~---v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v   78 (445)
                      .|+..+.. ..|+||||+||..|+.+.   ++. |...|+++|.++...|+||||+|+..++.+++++|+..   .|+++
T Consensus        46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~-Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~---~gad~  121 (166)
T PHA02743         46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIEL-LVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQ---LGVNL  121 (166)
T ss_pred             cchhhhccCCCCCcHHHHHHHhCccCHHHHHHH-HHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc---cCCCc
Confidence            34555543 469999999999988665   444 44678999998733699999999999999999999952   38899


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC
Q 013316           79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT  120 (445)
Q Consensus        79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~t  120 (445)
                      +.++..|.||||+|+..++.+++++|+.+|++++.++..|.+
T Consensus       122 ~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        122 GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            999999999999999999999999999999999999887754

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=1.1e-15  Score=152.43  Aligned_cols=186  Identities=18%  Similarity=0.237  Sum_probs=127.8

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------  236 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---------  236 (445)
                      ..|++++|++.++..|..++..               ...+..+||+||||||||++|+++++.+.+.+..         
T Consensus        11 ~~~~dvvGq~~v~~~L~~~i~~---------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s   75 (504)
T PRK14963         11 ITFDEVVGQEHVKEVLLAALRQ---------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES   75 (504)
T ss_pred             CCHHHhcChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence            3578899999999999886542               1233345999999999999999999999763321         


Q ss_pred             -------CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHh
Q 013316          237 -------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  302 (445)
Q Consensus       237 -------~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~  302 (445)
                             ....+.+++.++-      ..-..++.+.+.+       ...||+|||+|.+..           ..++.|++
T Consensus        76 c~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLLk  138 (504)
T PRK14963         76 CLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALLK  138 (504)
T ss_pred             hHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHHH
Confidence                   1112444443311      1223344443322       447999999988754           67888999


Q ss_pred             hccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316          303 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  380 (445)
Q Consensus       303 ~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~  380 (445)
                      .++.  ..+++|++++...  .   ..+.+++|+ ..++|++|+.+++...+...+.+..           ..++++++.
T Consensus       139 ~LEep~~~t~~Il~t~~~~--k---l~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~eg-----------i~i~~~Al~  201 (504)
T PRK14963        139 TLEEPPEHVIFILATTEPE--K---MPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEG-----------REAEPEALQ  201 (504)
T ss_pred             HHHhCCCCEEEEEEcCChh--h---CChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence            9986  4566666654332  2   267888998 7899999999999999999887642           234666766


Q ss_pred             HHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          381 ALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      .+ ...+      .|+.|.+.+.++++
T Consensus       202 ~i-a~~s------~GdlR~aln~Lekl  221 (504)
T PRK14963        202 LV-ARLA------DGAMRDAESLLERL  221 (504)
T ss_pred             HH-HHHc------CCCHHHHHHHHHHH
Confidence            44 4555      46667777778776

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.69  E-value=1.1e-16  Score=162.30  Aligned_cols=140  Identities=16%  Similarity=0.191  Sum_probs=109.3

Q ss_pred             CCCccCccCCCCCchHhHHHHHc--CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC------cHHHHHHhhcCCC
Q 013316            1 MQKNQDRRSRSAKPATIHGCAQS--GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN------KAEIVKSLLEWPG   72 (445)
Q Consensus         1 l~~~~~~~~~~~~~t~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g------~~~iv~~Ll~~~~   72 (445)
                      ++.|++++....|.||||+++..  ++.++++.|+. .|+++|..+  .+.||||.|+.++      +.+++++|+++  
T Consensus        23 L~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~-~GAdvn~~~--~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~--   97 (494)
T PHA02989         23 LRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLID-NGADVNYKG--YIETPLCAVLRNREITSNKIKKIVKLLLKF--   97 (494)
T ss_pred             HHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHH-cCCCccCCC--CCCCcHHHHHhccCcchhhHHHHHHHHHHC--
Confidence            36788888887788888766554  36788876664 688888876  3789999887654      46789999985  


Q ss_pred             CCCcccccccCCCCcHHHHHHHc---CCHHHHHHHHhcCCCC-cccccCCCChhhhhhc-CCCChHHHHHHHhhhhhHHh
Q 013316           73 NDKVELEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFI-EAKANEGKTPLDHLSN-GPGSAKLRELLLWHSEEQRK  147 (445)
Q Consensus        73 ~~g~~v~~~d~~g~tpLh~A~~~---g~~~~~~~Ll~~ga~~-~~~~~~g~tpl~~~a~-~~~~~~i~~~ll~~~~~~~~  147 (445)
                        |+++|.+|..|.||||.|+..   ++.+++++|+++||++ +.+|..|+||||+++. ..++.+++++|+++|+++..
T Consensus        98 --Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~  175 (494)
T PHA02989         98 --GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE  175 (494)
T ss_pred             --CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence              888999999999999987654   6788999999999999 7888999999944332 34678899999999887665

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=1.1e-15  Score=153.72  Aligned_cols=188  Identities=18%  Similarity=0.212  Sum_probs=130.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-----
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----  240 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~-----  240 (445)
                      ..|++++|++.+++.+..++..               ...+..+||+||||||||++|+.+|+.+.+.......+     
T Consensus        13 ~~f~divGq~~v~~~L~~~i~~---------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~   77 (527)
T PRK14969         13 KSFSELVGQEHVVRALTNALEQ---------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS   77 (527)
T ss_pred             CcHHHhcCcHHHHHHHHHHHHc---------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            4688899999999988886542               12334468999999999999999999997632211111     


Q ss_pred             ------------eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          241 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       241 ------------~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                  +++++.+.      ...-..++++++.+       +..|+||||+|.+..           .+++.|+
T Consensus        78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLL  140 (527)
T PRK14969         78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAML  140 (527)
T ss_pred             HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHH
Confidence                        22222211      01233456666544       347999999998876           6789999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.+++  +.+++|++|+....  +   -+.+++|| ..++|+.++.+++.+.+...+.+..           ..++.+++
T Consensus       141 K~LEepp~~~~fIL~t~d~~k--i---l~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg-----------i~~~~~al  203 (527)
T PRK14969        141 KTLEEPPEHVKFILATTDPQK--I---PVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN-----------IPFDATAL  203 (527)
T ss_pred             HHHhCCCCCEEEEEEeCChhh--C---chhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  56778877755332  2   35689998 9999999999999999998887641           23455666


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      . ++...+      .|+.|.+.+++++++.
T Consensus       204 ~-~la~~s------~Gslr~al~lldqai~  226 (527)
T PRK14969        204 Q-LLARAA------AGSMRDALSLLDQAIA  226 (527)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence            5 444555      4566777778887744

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.69  E-value=1.2e-15  Score=159.57  Aligned_cols=187  Identities=19%  Similarity=0.194  Sum_probs=128.2

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++|+|++.+++.|+..+..               ...+..+||+||+|||||++|+.|++.+.+...-.        
T Consensus        12 ~~f~eiiGqe~v~~~L~~~i~~---------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~   76 (824)
T PRK07764         12 ATFAEVIGQEHVTEPLSTALDS---------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD   76 (824)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence            3678899999999998886542               12333479999999999999999999997632100        


Q ss_pred             -----------CCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHH
Q 013316          238 -----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEE  299 (445)
Q Consensus       238 -----------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~  299 (445)
                                 ...|++++.++..      .-..++++.+.       ..+.|+||||+|.|..           ..++.
T Consensus        77 sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~Na  139 (824)
T PRK07764         77 SCVALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNA  139 (824)
T ss_pred             HHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHH
Confidence                       1123333321110      12233443322       2458999999999986           78899


Q ss_pred             HHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316          300 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  377 (445)
Q Consensus       300 ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  377 (445)
                      ||+.|++  ..+++|++++....  +   -+.|++|+ .++.|..++.+++...|...+++..           ..++.+
T Consensus       140 LLK~LEEpP~~~~fIl~tt~~~k--L---l~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG-----------v~id~e  202 (824)
T PRK07764        140 LLKIVEEPPEHLKFIFATTEPDK--V---IGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG-----------VPVEPG  202 (824)
T ss_pred             HHHHHhCCCCCeEEEEEeCChhh--h---hHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCHH
Confidence            9999997  66777777654332  2   46789998 8999999999999999998887642           234556


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          378 AIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      ++. ++...+      .++.|.+.+++++.+
T Consensus       203 al~-lLa~~s------gGdlR~Al~eLEKLi  226 (824)
T PRK07764        203 VLP-LVIRAG------GGSVRDSLSVLDQLL  226 (824)
T ss_pred             HHH-HHHHHc------CCCHHHHHHHHHHHH
Confidence            666 444555      345566667777664

>PRK04195 replication factor C large subunit; Provisional

Probab=99.69  E-value=9.5e-16  Score=153.99  Aligned_cols=176  Identities=19%  Similarity=0.313  Sum_probs=120.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++|++.++..+.+|+....            ...++.++||+||||||||++|+++|+.++.       .++++++
T Consensus        12 ~l~dlvg~~~~~~~l~~~l~~~~------------~g~~~~~lLL~GppG~GKTtla~ala~el~~-------~~ielna   72 (482)
T PRK04195         12 TLSDVVGNEKAKEQLREWIESWL------------KGKPKKALLLYGPPGVGKTSLAHALANDYGW-------EVIELNA   72 (482)
T ss_pred             CHHHhcCCHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEcc
Confidence            57789999999999999876442            1234678999999999999999999999865       7888888


Q ss_pred             ccccccccCCchhHHHHHHHH---------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          247 TDLVGEFVGHTGPKTRRRIKE---------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~---------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++....      ..+..++..         ..+.||+|||+|.+....+       ...++.|+..++.....+|++++.
T Consensus        73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~~~~~iIli~n~  139 (482)
T PRK04195         73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKKAKQPIILTAND  139 (482)
T ss_pred             cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHcCCCCEEEeccC
Confidence            764321      122222211         2457999999999976321       134566667776655444554432


Q ss_pred             hhHHHHHhhCc-ccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          318 EPMKRVIASNE-GFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       318 ~~~~~~~~~~~-~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      . ..    ..+ .|++|+ ..|.|++|+.+++..+++..+.+..           ..++++++..++ ..++||+|
T Consensus       140 ~-~~----~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~eg-----------i~i~~eaL~~Ia-~~s~GDlR  197 (482)
T PRK04195        140 P-YD----PSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEG-----------IECDDEALKEIA-ERSGGDLR  197 (482)
T ss_pred             c-cc----cchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHcCCCHH
Confidence            2 11    133 567776 8899999999999999999887642           245667777555 44544443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.69  E-value=5.5e-17  Score=137.00  Aligned_cols=128  Identities=18%  Similarity=0.200  Sum_probs=112.1

Q ss_pred             CccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCC
Q 013316            6 DRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY   84 (445)
Q Consensus         6 ~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~   84 (445)
                      ..|..+ .|.|||.||+.+|+++.|+.|| ..|+++..... ...++|.+|+..|..+||++||..    +.|+|.-|.+
T Consensus       152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL-~~GAdp~~lgk-~resALsLAt~ggytdiV~lLL~r----~vdVNvyDwN  225 (296)
T KOG0502|consen  152 KVNACDEFGFTPLIWAAAKGHIPVVQFLL-NSGADPDALGK-YRESALSLATRGGYTDIVELLLTR----EVDVNVYDWN  225 (296)
T ss_pred             cccCccccCchHhHHHHhcCchHHHHHHH-HcCCChhhhhh-hhhhhHhHHhcCChHHHHHHHHhc----CCCcceeccC
Confidence            455555 6999999999999999998777 56899988876 577999999999999999999995    8899999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316           85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW  140 (445)
Q Consensus        85 g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~  140 (445)
                      |-|||.+|++.++.+|++.|+..||+++..+..|.+++ -.|...++..+.+++.+
T Consensus       226 GgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~m-dlAValGyr~Vqqvie~  280 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIM-DLAVALGYRIVQQVIEK  280 (296)
T ss_pred             CCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHH-HHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999 66777777744444433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.68  E-value=2.4e-17  Score=144.60  Aligned_cols=136  Identities=26%  Similarity=0.321  Sum_probs=120.1

Q ss_pred             HHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCC
Q 013316           18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC   97 (445)
Q Consensus        18 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~   97 (445)
                      +.-|+.|+.-.|+..|.....+.|.-|+ .|-+||||||..||..+++.|+..    |+.+|..+....||||+|+.+|+
T Consensus         5 f~wcregna~qvrlwld~tehdln~gdd-hgfsplhwaakegh~aivemll~r----garvn~tnmgddtplhlaaahgh   79 (448)
T KOG0195|consen    5 FGWCREGNAFQVRLWLDDTEHDLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSR----GARVNSTNMGDDTPLHLAAAHGH   79 (448)
T ss_pred             hhhhhcCCeEEEEEEecCcccccccccc-cCcchhhhhhhcccHHHHHHHHhc----ccccccccCCCCcchhhhhhccc
Confidence            4446677766666667777788888887 799999999999999999999984    89999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           98 NEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        98 ~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      -++|..|++..+|+|+.|..|+||| |+|+..++..+.+-|++.|+....-++.+.++..++
T Consensus        80 rdivqkll~~kadvnavnehgntpl-hyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   80 RDIVQKLLSRKADVNAVNEHGNTPL-HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHHHHHHHhcccchhhccCCCch-hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            9999999999999999999999999 899999999999999999988777776666665543

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.68  E-value=1.3e-15  Score=138.37  Aligned_cols=178  Identities=14%  Similarity=0.177  Sum_probs=120.3

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHH-HccCcEEEEcCccccc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLI  282 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-~a~~~il~lDEid~l~  282 (445)
                      ....+++|+||||||||++|+++++.+...+.    .++.+++..+...            +. ...+.+|+|||+|.+.
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~----~~~~i~~~~~~~~------------~~~~~~~~~liiDdi~~l~  103 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADASYGGR----NARYLDAASPLLA------------FDFDPEAELYAVDDVERLD  103 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC----cEEEEehHHhHHH------------HhhcccCCEEEEeChhhcC
Confidence            34568999999999999999999998865332    7777777665321            11 1245799999999886


Q ss_pred             cCCCCCCchhHHHHHHHHHhhcc----CCcEEEEEecCchhHHHHHhhCccccccc--ccceeCCCCCHHHHHHHHHHHH
Q 013316          283 PMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~i~a~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l  356 (445)
                      +           ..+..|...++    .+..++|++++..+...  ...+.|++||  ...+.+|+|+.+++..++....
T Consensus       104 ~-----------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~--~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~  170 (227)
T PRK08903        104 D-----------AQQIALFNLFNRVRAHGQGALLVAGPAAPLAL--PLREDLRTRLGWGLVYELKPLSDADKIAALKAAA  170 (227)
T ss_pred             c-----------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC--CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence            4           22333444442    34444555555433221  1257788888  4689999999999888888766


Q ss_pred             hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316          357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG  436 (445)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a  436 (445)
                      .+.           ...++++++..+.. .|      ++|.++++++++..... +.         .....||...++++
T Consensus       171 ~~~-----------~v~l~~~al~~L~~-~~------~gn~~~l~~~l~~l~~~-~~---------~~~~~i~~~~~~~~  222 (227)
T PRK08903        171 AER-----------GLQLADEVPDYLLT-HF------RRDMPSLMALLDALDRY-SL---------EQKRPVTLPLLREM  222 (227)
T ss_pred             HHc-----------CCCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHH-HH---------HhCCCCCHHHHHHH
Confidence            543           23566778776665 67      89999999999986321 11         11236888888877


Q ss_pred             HH
Q 013316          437 LK  438 (445)
Q Consensus       437 ~~  438 (445)
                      ++
T Consensus       223 l~  224 (227)
T PRK08903        223 LA  224 (227)
T ss_pred             Hh
Confidence            65

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=99.68  E-value=1e-16  Score=157.10  Aligned_cols=175  Identities=19%  Similarity=0.259  Sum_probs=135.5

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-----ccccccCCchhHHH--------HHHHHcc
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-----LVGEFVGHTGPKTR--------RRIKEAE  269 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~-----l~~~~~g~~~~~~~--------~~~~~a~  269 (445)
                      .....++++.|+|||||..+||+||+.+..     .+||+.++|..     +.+++||+.+....        ..+++|.
T Consensus       333 ~~~~~pvll~GEtGtGKe~laraiH~~s~~-----~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~  407 (606)
T COG3284         333 AATDLPVLLQGETGTGKEVLARAIHQNSEA-----AGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD  407 (606)
T ss_pred             hhcCCCeEecCCcchhHHHHHHHHHhcccc-----cCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC
Confidence            345679999999999999999999998763     55999999987     44668888544433        3678889


Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc------------EEEEEecCchhHHHHHhh--Ccccccccc
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------------VVVIFAGYSEPMKRVIAS--NEGFCRRVT  335 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~------------~~~i~a~~~~~~~~~~~~--~~~l~~R~~  335 (445)
                      +|+||+|||           ++++..+|..||+.++++.            |.||.||+.+....+.+.  ...|..|+.
T Consensus       408 gGtlFldeI-----------gd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~  476 (606)
T COG3284         408 GGTLFLDEI-----------GDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLN  476 (606)
T ss_pred             CCccHHHHh-----------hhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhc
Confidence            999999999           6777799999999998743            577777776655433211  144555774


Q ss_pred             -cceeCCCCC-HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          336 -KFFHFNDFN-SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       336 -~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                       ..|.+|++. ..|....+.+++.+...        -..+++.+++..+.++.|      |||.|+|.++++.+
T Consensus       477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~--------~~~~l~~~~~~~l~~~~W------PGNirel~~v~~~~  536 (606)
T COG3284         477 AFVITLPPLRERSDRIPLLDRILKREND--------WRLQLDDDALARLLAYRW------PGNIRELDNVIERL  536 (606)
T ss_pred             CeeeccCchhcccccHHHHHHHHHHccC--------CCccCCHHHHHHHHhCCC------CCcHHHHHHHHHHH
Confidence             778888887 56777777777777643        134677889999998888      99999999999988

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.68  E-value=1.4e-15  Score=145.43  Aligned_cols=177  Identities=21%  Similarity=0.225  Sum_probs=114.4

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+++++|++.++..+..++..               ...+..++|+||||+|||++|+++++.++.       ++..++
T Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~-------~~~~i~   75 (316)
T PHA02544         18 STIDECILPAADKETFKSIVKK---------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGA-------EVLFVN   75 (316)
T ss_pred             CcHHHhcCcHHHHHHHHHHHhc---------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------cceEec
Confidence            3578899999999988886541               223445666999999999999999998754       677777


Q ss_pred             cccccccccCCchhHHHHHHHH----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  319 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~  319 (445)
                      +++  +. .......+......    +.+.||||||+|.+...          +.+..|...++.  +...+|++++...
T Consensus        76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~~~~~~Ilt~n~~~  142 (316)
T PHA02544         76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYSKNCSFIITANNKN  142 (316)
T ss_pred             cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcCCCceEEEEcCChh
Confidence            765  11 11111112111111    24689999999988431          234445555553  4455666654332


Q ss_pred             HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316          320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  387 (445)
Q Consensus       320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  387 (445)
                        .   ..|++++|| ..+.|+.|+.+++.+++..++..........+    ..++++++..+....+
T Consensus       143 --~---l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~----~~i~~~al~~l~~~~~  200 (316)
T PHA02544        143 --G---IIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEG----VEVDMKVLAALVKKNF  200 (316)
T ss_pred             --h---chHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHhcC
Confidence              2   268899999 68999999999999888876665432222222    2456678787776554

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.3e-15  Score=141.83  Aligned_cols=191  Identities=19%  Similarity=0.332  Sum_probs=134.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCch-hHHHHHHHHc-------cCcEEEEc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTG-PKTRRRIKEA-------EGGILFVD  276 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~-~~~~~~~~~a-------~~~il~lD  276 (445)
                      ..+||+.||+|+|||++|+.||+.++.       ||.-.+|+.|... |+|+.- .-+.+++..|       +.||+|||
T Consensus       226 KSNvLllGPtGsGKTllaqTLAr~ldV-------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflD  298 (564)
T KOG0745|consen  226 KSNVLLLGPTGSGKTLLAQTLARVLDV-------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLD  298 (564)
T ss_pred             cccEEEECCCCCchhHHHHHHHHHhCC-------CeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEe
Confidence            458999999999999999999999988       9999999998654 999854 3445665444       66999999


Q ss_pred             CccccccCCCCC--Cch-hHHHHHHHHHhhccC-----------------------CcEEEEEecCchhHHHHHhhC---
Q 013316          277 EAYRLIPMQKAD--DKD-YGIEALEEIMSVMDG-----------------------GKVVVIFAGYSEPMKRVIASN---  327 (445)
Q Consensus       277 Eid~l~~~~~~~--~~~-~~~~~~~~ll~~~~~-----------------------~~~~~i~a~~~~~~~~~~~~~---  327 (445)
                      |+|+|..+..+-  ..+ .+.-+|..||+.+++                       .+|.+|+.+.-..++.++...   
T Consensus       299 EvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d  378 (564)
T KOG0745|consen  299 EVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDD  378 (564)
T ss_pred             hhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcc
Confidence            999998543321  122 234577889998875                       125666655433333322111   


Q ss_pred             ------------------------------------------------cccccccccceeCCCCCHHHHHHHHH----HH
Q 013316          328 ------------------------------------------------EGFCRRVTKFFHFNDFNSEELAKILH----IK  355 (445)
Q Consensus       328 ------------------------------------------------~~l~~R~~~~i~~~~~~~~~~~~il~----~~  355 (445)
                                                                      |.|-.||+..+.|..++.+++..+|.    ..
T Consensus       379 ~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL  458 (564)
T KOG0745|consen  379 KSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNAL  458 (564)
T ss_pred             hhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhH
Confidence                                                            88999999999999999999999983    23


Q ss_pred             HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      +.++..-+...++.+  .++.+++..+.....   .|..| +|-||.++|++.-
T Consensus       459 ~~Qyk~lf~~~nV~L--~fTe~Al~~IAq~Al---~r~TG-ARgLRsIlE~~Ll  506 (564)
T KOG0745|consen  459 GKQYKKLFGMDNVEL--HFTEKALEAIAQLAL---KRKTG-ARGLRSILESLLL  506 (564)
T ss_pred             HHHHHHHhccCCeeE--EecHHHHHHHHHHHH---hhccc-hHHHHHHHHHHHh
Confidence            334333333344443  678888885554433   23445 8999999999844

>PHA02917 ankyrin-like protein; Provisional

Probab=99.67  E-value=2.7e-16  Score=162.33  Aligned_cols=153  Identities=14%  Similarity=0.114  Sum_probs=97.6

Q ss_pred             CccCccC-CCCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHH----HHHHhhcCCC--
Q 013316            3 KNQDRRS-RSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE----IVKSLLEWPG--   72 (445)
Q Consensus         3 ~~~~~~~-~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~----iv~~Ll~~~~--   72 (445)
                      .|+..+. ...|.||||+||..   |+.++++.||. .|++++..+. .|+||||+|+..|+.+    ++++|++..+  
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~~-~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~   98 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKNW-RQLTPLEEYTNSRHVKVNKDIAMALLEATGYS   98 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccCC-CCCCHHHHHHHcCChhHHHHHHHHHHhccCCC
Confidence            4455555 34689999997665   78999988775 6888888886 7999999888776632    3344443210  


Q ss_pred             -------------------------CCCcccccccCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCccccc---CC----
Q 013316           73 -------------------------NDKVELEAQNMYGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKAN---EG----  118 (445)
Q Consensus        73 -------------------------~~g~~v~~~d~~g~tpLh~A~--~~g~~~~~~~Ll~~ga~~~~~~~---~g----  118 (445)
                                               ..|+++|.+|..|.||||.++  ..|+.+++++|+++||+++.+|.   .|    
T Consensus        99 n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~  178 (661)
T PHA02917         99 NINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYD  178 (661)
T ss_pred             CCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccc
Confidence                                     036677777777777777432  45677777777777777765442   22    


Q ss_pred             -------CChhhhhhc----------CCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316          119 -------KTPLDHLSN----------GPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus       119 -------~tpl~~~a~----------~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                             .||||+++.          ..++.+++++|+++|++.+.++..+.++..
T Consensus       179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh  234 (661)
T PHA02917        179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQ  234 (661)
T ss_pred             cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHH
Confidence                   477743332          134567777777777776665544444443

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.67  E-value=2.7e-15  Score=152.76  Aligned_cols=188  Identities=21%  Similarity=0.230  Sum_probs=130.6

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++|+|++.+++.|...+..               ...+..+||+||+|||||++|+.+++.+.+.....        
T Consensus        13 ~~f~~iiGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~   77 (576)
T PRK14965         13 QTFSDLTGQEHVSRTLQNAIDT---------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP   77 (576)
T ss_pred             CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence            4688999999999998886542               12344579999999999999999999987632211        


Q ss_pred             ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                               ...+++++.++-      ..-..++.+.+.+       ++.|++|||+|.+..           ..++.|+
T Consensus        78 ~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLL  140 (576)
T PRK14965         78 PCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALL  140 (576)
T ss_pred             HHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHH
Confidence                     112333332211      1223445554432       457999999999986           6789999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  ..+++|++|+...  .+   -+.+++|+ ..+.|..++.+++...+...+++..           ..++.+++
T Consensus       141 k~LEepp~~~~fIl~t~~~~--kl---~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg-----------i~i~~~al  203 (576)
T PRK14965        141 KTLEEPPPHVKFIFATTEPH--KV---PITILSRC-QRFDFRRIPLQKIVDRLRYIADQEG-----------ISISDAAL  203 (576)
T ss_pred             HHHHcCCCCeEEEEEeCChh--hh---hHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHH
Confidence            99987  5677777765432  22   46789998 8999999999999999998887642           24556676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      . ++...+      .|+.|.+.+.+++++.
T Consensus       204 ~-~la~~a------~G~lr~al~~Ldqlia  226 (576)
T PRK14965        204 A-LVARKG------DGSMRDSLSTLDQVLA  226 (576)
T ss_pred             H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence            6 444555      4566667777777644

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.67  E-value=1e-16  Score=168.04  Aligned_cols=155  Identities=28%  Similarity=0.339  Sum_probs=135.1

Q ss_pred             CCccCccCCC-CCchHhHHHHHcC-CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC-------
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG-------   72 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~-------   72 (445)
                      .+|++++... .|.||+|+|+..| ..+... ++.+.+.++|.... .|.||||.|+..||.+++..+++...       
T Consensus       428 ~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~-~l~~~g~~~n~~s~-~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~  505 (1143)
T KOG4177|consen  428 KRGASPNAKAKLGYTPLHVAAKKGRYLQIAR-LLLQYGADPNAVSK-QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAK  505 (1143)
T ss_pred             ccCCChhhHhhcCCChhhhhhhcccHhhhhh-hHhhcCCCcchhcc-ccCcchhhhhccCCchHHHHhhhcCCccCccch
Confidence            3578888877 5999999999999 555554 55678999999987 89999999999999999999988541       


Q ss_pred             ----------------------CCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC
Q 013316           73 ----------------------NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG  130 (445)
Q Consensus        73 ----------------------~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~  130 (445)
                                            ..|++++.++..|.||||+|+.+|+.++|++|+++||+++++++.|+||| |.|+..+
T Consensus       506 ~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPL-H~Aa~~G  584 (1143)
T KOG4177|consen  506 KGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPL-HQAAQQG  584 (1143)
T ss_pred             hccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChh-hHHHHcC
Confidence                                  13678888889999999999999999999999999999999999999999 7788888


Q ss_pred             ChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          131 SAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       131 ~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      +.+++++|+++|++++..+..+.++...+
T Consensus       585 ~~~i~~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  585 HNDIAELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             hHHHHHHHHHcCCCCCcccccCcchhHHH
Confidence            99999999999999999887777776554

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.66  E-value=3.7e-15  Score=148.85  Aligned_cols=186  Identities=18%  Similarity=0.235  Sum_probs=128.1

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.+++.+.+.+..               ...+..+||+||||||||++|+.+|+.+.+.....        
T Consensus        13 ~~F~dIIGQe~iv~~L~~aI~~---------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~   77 (605)
T PRK05896         13 HNFKQIIGQELIKKILVNAILN---------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS   77 (605)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence            3578899999999888875431               23455699999999999999999999986532111        


Q ss_pred             ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                               ...++++++++.      -.-..++.+++.+       .+.|++|||+|.+..           .+++.|+
T Consensus        78 sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLL  140 (605)
T PRK05896         78 VCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALL  140 (605)
T ss_pred             HHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHH
Confidence                     112333333211      0123345554332       357999999999875           5778999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      ..|++  ...++|++++..  ..+   .+++++|| ..+.|++++.+++...+...+.+..           ..++++++
T Consensus       141 KtLEEPp~~tvfIL~Tt~~--~KL---l~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~keg-----------i~Is~eal  203 (605)
T PRK05896        141 KTLEEPPKHVVFIFATTEF--QKI---PLTIISRC-QRYNFKKLNNSELQELLKSIAKKEK-----------IKIEDNAI  203 (605)
T ss_pred             HHHHhCCCcEEEEEECCCh--Hhh---hHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99986  456777766542  222   57899998 7899999999999999998887641           24556676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      ..+ ...+      .|+.|.+.+.++.+
T Consensus       204 ~~L-a~lS------~GdlR~AlnlLekL  224 (605)
T PRK05896        204 DKI-ADLA------DGSLRDGLSILDQL  224 (605)
T ss_pred             HHH-HHHc------CCcHHHHHHHHHHH
Confidence            644 4554      45667777777775

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=3.5e-15  Score=142.86  Aligned_cols=204  Identities=17%  Similarity=0.224  Sum_probs=132.5

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc---------------cCCchhHHHHH---
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF---------------VGHTGPKTRRR---  264 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~g~~~~~~~~~---  264 (445)
                      ...|.++++|||||||||.+++.+.+++.....  ...++.++|-...+.+               .|-+....-+.   
T Consensus        39 ~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~--~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~  116 (366)
T COG1474          39 GERPSNIIIYGPTGTGKTATVKFVMEELEESSA--NVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYD  116 (366)
T ss_pred             CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc--cCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHH
Confidence            456778999999999999999999999976321  1127888887643221               12222222222   


Q ss_pred             -HHH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccc-ccee
Q 013316          265 -IKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFH  339 (445)
Q Consensus       265 -~~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~  339 (445)
                       +.. ...-||+|||+|.|..+.+        +.+-.|+...+.  .++.+|+.++.....  ...+|.+.++|. ..|.
T Consensus       117 ~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~~~~v~vi~i~n~~~~~--~~ld~rv~s~l~~~~I~  186 (366)
T COG1474         117 NLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGENKVKVSIIAVSNDDKFL--DYLDPRVKSSLGPSEIV  186 (366)
T ss_pred             HHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhccccceeEEEEEEeccHHHH--HHhhhhhhhccCcceee
Confidence             222 1337999999999998543        555666665554  345666665555432  234899999884 7799


Q ss_pred             CCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCC
Q 013316          340 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC  419 (445)
Q Consensus       340 ~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~  419 (445)
                      ||+|+.+|+.+|+....+..          +.+.+-.+.+..+++...   ....|.+|....++.+|.+.+        
T Consensus       187 F~pY~a~el~~Il~~R~~~~----------~~~~~~~~~vl~lia~~~---a~~~GDAR~aidilr~A~eiA--------  245 (366)
T COG1474         187 FPPYTAEELYDILRERVEEG----------FSAGVIDDDVLKLIAALV---AAESGDARKAIDILRRAGEIA--------  245 (366)
T ss_pred             eCCCCHHHHHHHHHHHHHhh----------ccCCCcCccHHHHHHHHH---HHcCccHHHHHHHHHHHHHHH--------
Confidence            99999999999999988753          122222223333554443   223457777778888774433        


Q ss_pred             CChhhhhhccHHHHHHHHHHH
Q 013316          420 LDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       420 ~~~~~~~~i~~~d~~~a~~~~  440 (445)
                       +.+...+++.+++..|.+++
T Consensus       246 -e~~~~~~v~~~~v~~a~~~~  265 (366)
T COG1474         246 -EREGSRKVSEDHVREAQEEI  265 (366)
T ss_pred             -HhhCCCCcCHHHHHHHHHHh
Confidence             33445588999999886554

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.66  E-value=2.9e-15  Score=146.23  Aligned_cols=227  Identities=20%  Similarity=0.182  Sum_probs=139.3

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CCCCCeEEeecc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQRT  247 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~~~~~~~~~~~  247 (445)
                      +++|.++..+.|..++....            ....+.+++++||||||||++++.+.+.+.....  -....++.++|.
T Consensus        16 ~l~gRe~e~~~l~~~l~~~~------------~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~   83 (365)
T TIGR02928        16 RIVHRDEQIEELAKALRPIL------------RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ   83 (365)
T ss_pred             CCCCcHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence            48888888888877665431            1245678999999999999999999988753210  001257777776


Q ss_pred             cccc----------ccc--CC-------chhH-HHHHHHH----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316          248 DLVG----------EFV--GH-------TGPK-TRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV  303 (445)
Q Consensus       248 ~l~~----------~~~--g~-------~~~~-~~~~~~~----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~  303 (445)
                      ...+          .+.  |.       +... ...+++.    .+..||+|||+|.+....+        +++..|+..
T Consensus        84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~~  155 (365)
T TIGR02928        84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSRA  155 (365)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhcc
Confidence            5321          121  21       1111 2223322    2347999999999984222        355566655


Q ss_pred             c-----cCCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316          304 M-----DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  377 (445)
Q Consensus       304 ~-----~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  377 (445)
                      .     ...++.+|+.++.....  ...++.+.+||. ..+.|++|+.+|+.+|++..++...        . ...++++
T Consensus       156 ~~~~~~~~~~v~lI~i~n~~~~~--~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~--------~-~~~~~~~  224 (365)
T TIGR02928       156 RSNGDLDNAKVGVIGISNDLKFR--ENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAF--------Y-DGVLDDG  224 (365)
T ss_pred             ccccCCCCCeEEEEEEECCcchH--hhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhc--------c-CCCCChh
Confidence            2     22567777766554332  234788888985 6799999999999999999886311        0 1234555


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          378 AIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      ++. ++....   .+..|+.|.+.++++.|......         ++...|+.+|+.+|+..+
T Consensus       225 ~l~-~i~~~~---~~~~Gd~R~al~~l~~a~~~a~~---------~~~~~it~~~v~~a~~~~  274 (365)
T TIGR02928       225 VIP-LCAALA---AQEHGDARKAIDLLRVAGEIAER---------EGAERVTEDHVEKAQEKI  274 (365)
T ss_pred             HHH-HHHHHH---HHhcCCHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHH
Confidence            544 322222   12246677777777777433221         123469999999888765

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.66  E-value=4.3e-15  Score=150.63  Aligned_cols=187  Identities=20%  Similarity=0.211  Sum_probs=130.5

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-C-----
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-D-----  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-~-----  239 (445)
                      ..|++++|++.+++.|...+..               .+.+..+||+||+|||||++|+++|+.+.+...... +     
T Consensus        21 ~~f~dliGq~~~v~~L~~~~~~---------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~   85 (598)
T PRK09111         21 QTFDDLIGQEAMVRTLTNAFET---------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL   85 (598)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence            3678899999999998886542               234567999999999999999999999876432111 1     


Q ss_pred             ----------------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHH
Q 013316          240 ----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA  296 (445)
Q Consensus       240 ----------------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~  296 (445)
                                      .+++++.++-    .  .-..++.+++.+       .+.|++|||+|.+..           ..
T Consensus        86 cg~c~~C~~i~~g~h~Dv~e~~a~s~----~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a  148 (598)
T PRK09111         86 CGVGEHCQAIMEGRHVDVLEMDAASH----T--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AA  148 (598)
T ss_pred             CcccHHHHHHhcCCCCceEEeccccc----C--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HH
Confidence                            1222222110    0  123456665544       458999999999975           67


Q ss_pred             HHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcc
Q 013316          297 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC  374 (445)
Q Consensus       297 ~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~  374 (445)
                      ++.|++.|++  ..+++|++++....  +   -+.+++|| ..+.|+.++.+++...+...+++..           ..+
T Consensus       149 ~naLLKtLEePp~~~~fIl~tte~~k--l---l~tI~SRc-q~~~f~~l~~~el~~~L~~i~~keg-----------i~i  211 (598)
T PRK09111        149 FNALLKTLEEPPPHVKFIFATTEIRK--V---PVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEG-----------VEV  211 (598)
T ss_pred             HHHHHHHHHhCCCCeEEEEEeCChhh--h---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence            8899999986  55667766654322  2   35689998 8899999999999999999887642           245


Q ss_pred             cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      +.+++..++ ..+      .|+.|.+.+.+++++
T Consensus       212 ~~eAl~lIa-~~a------~Gdlr~al~~Ldkli  238 (598)
T PRK09111        212 EDEALALIA-RAA------EGSVRDGLSLLDQAI  238 (598)
T ss_pred             CHHHHHHHH-HHc------CCCHHHHHHHHHHHH
Confidence            666766444 555      456677777777764

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.66  E-value=6.7e-15  Score=146.23  Aligned_cols=188  Identities=19%  Similarity=0.221  Sum_probs=129.9

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.+++.|...+..               ...+...||+||+|||||++|+++++.+.+.....        
T Consensus        11 ~~fdeiiGqe~v~~~L~~~I~~---------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~   75 (535)
T PRK08451         11 KHFDELIGQESVSKTLSLALDN---------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI   75 (535)
T ss_pred             CCHHHccCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence            4688899999999988886542               12344468999999999999999999986422110        


Q ss_pred             ---------CCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                               ...+++++.++-      ..-..++.+++.       +...|++|||+|.+..           ++++.|+
T Consensus        76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NALL  138 (535)
T PRK08451         76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNALL  138 (535)
T ss_pred             HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence                     111233322110      012455666544       2347999999999876           7889999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.|++  ..+++|++++..  ..+   .|++++|+ ..++|.+++.+++...+...+.+..           ..++++++
T Consensus       139 K~LEEpp~~t~FIL~ttd~--~kL---~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG-----------i~i~~~Al  201 (535)
T PRK08451        139 KTLEEPPSYVKFILATTDP--LKL---PATILSRT-QHFRFKQIPQNSIISHLKTILEKEG-----------VSYEPEAL  201 (535)
T ss_pred             HHHhhcCCceEEEEEECCh--hhC---chHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99986  456677766542  222   57899997 8999999999999999998887642           24566676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      . .+...+      .|+.|.+.+++++++.
T Consensus       202 ~-~Ia~~s------~GdlR~alnlLdqai~  224 (535)
T PRK08451        202 E-ILARSG------NGSLRDTLTLLDQAII  224 (535)
T ss_pred             H-HHHHHc------CCcHHHHHHHHHHHHH
Confidence            6 444555      4566667777777644

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.66  E-value=5.5e-15  Score=145.77  Aligned_cols=227  Identities=16%  Similarity=0.147  Sum_probs=141.1

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      .++|.++..++|...+....            ....+.+++++||||||||++++.+.+.+....  ....++.++|...
T Consensus        31 ~l~~Re~e~~~l~~~l~~~~------------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~--~~~~~v~in~~~~   96 (394)
T PRK00411         31 NLPHREEQIEELAFALRPAL------------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA--VKVVYVYINCQID   96 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHh------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEECCcC
Confidence            36777776666666543321            124566899999999999999999999886532  1236777887643


Q ss_pred             c----------ccccCC-------chhHHHHH----HHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-
Q 013316          250 V----------GEFVGH-------TGPKTRRR----IKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-  306 (445)
Q Consensus       250 ~----------~~~~g~-------~~~~~~~~----~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-  306 (445)
                      .          .++.+.       +...+...    +... .+.||+|||+|.+....+       .+.+..|+..++. 
T Consensus        97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~  169 (394)
T PRK00411         97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEY  169 (394)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhcc
Confidence            2          122221       11222222    2211 237999999999982211       1455566655542 


Q ss_pred             --CcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHH
Q 013316          307 --GKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI  383 (445)
Q Consensus       307 --~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  383 (445)
                        .++.+|+.++.......  .+|.+++||. ..|.|++|+.+++.+|++..+...        +. ...++++++. .+
T Consensus       170 ~~~~v~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--------~~-~~~~~~~~l~-~i  237 (394)
T PRK00411        170 PGARIGVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--------FY-PGVVDDEVLD-LI  237 (394)
T ss_pred             CCCeEEEEEEECCcchhhh--cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--------cc-cCCCCHhHHH-HH
Confidence              36777777665443322  3788888874 678999999999999999887542        01 1234555654 44


Q ss_pred             HHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          384 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       384 ~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      ...+.+   ..|+.|.+..++..|...+..         .+..+|+.+|+.+|+..+.
T Consensus       238 ~~~~~~---~~Gd~r~a~~ll~~a~~~a~~---------~~~~~I~~~~v~~a~~~~~  283 (394)
T PRK00411        238 ADLTAR---EHGDARVAIDLLRRAGLIAER---------EGSRKVTEEDVRKAYEKSE  283 (394)
T ss_pred             HHHHHH---hcCcHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHH
Confidence            444422   356677777778776443222         1234799999999988753

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.65  E-value=8.7e-15  Score=142.33  Aligned_cols=187  Identities=18%  Similarity=0.244  Sum_probs=126.9

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.+++.+.+++..               ...+..+||+||||+|||++|+.+++.+.......        
T Consensus        11 ~~~~~iig~~~~~~~l~~~~~~---------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~   75 (355)
T TIGR02397        11 QTFEDVIGQEHIVQTLKNAIKN---------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE   75 (355)
T ss_pred             CcHhhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            3678899999999988876542               22345689999999999999999999986532110        


Q ss_pred             ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                               ...++.++.+..      .....++++++.+       .+.|++|||+|.+..           ..++.|+
T Consensus        76 ~c~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll  138 (355)
T TIGR02397        76 SCKEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALL  138 (355)
T ss_pred             HHHHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHH
Confidence                     112333333210      1223455565544       336999999998865           5678888


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.+++  ..+++|+++++..  .+   .+++++|+ ..+.|++|+.+++.+++..++++..           ..++++++
T Consensus       139 ~~le~~~~~~~lIl~~~~~~--~l---~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~a~  201 (355)
T TIGR02397       139 KTLEEPPEHVVFILATTEPH--KI---PATILSRC-QRFDFKRIPLEDIVERLKKILDKEG-----------IKIEDEAL  201 (355)
T ss_pred             HHHhCCccceeEEEEeCCHH--HH---HHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            88875  4566666654322  22   46788998 7899999999999999999887642           24556676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      ..+. ..+      .++.+.+.+.++++.
T Consensus       202 ~~l~-~~~------~g~~~~a~~~lekl~  223 (355)
T TIGR02397       202 ELIA-RAA------DGSLRDALSLLDQLI  223 (355)
T ss_pred             HHHH-HHc------CCChHHHHHHHHHHH
Confidence            6444 444      456677777777763

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.65  E-value=7e-15  Score=148.46  Aligned_cols=187  Identities=17%  Similarity=0.197  Sum_probs=129.4

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  238 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-------  238 (445)
                      ..|++++|++.+++.|..++..               ...+..+||+||||+|||++|+++|+.+.+......       
T Consensus        13 ~~f~diiGqe~iv~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~   77 (563)
T PRK06647         13 RDFNSLEGQDFVVETLKHSIES---------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS   77 (563)
T ss_pred             CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence            4688899999999998886542               223456999999999999999999999875321110       


Q ss_pred             ----------CCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          239 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       239 ----------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                ..++.++.+.      ...-..++.+.+.       +++.|++|||+|.+..           .+++.|+
T Consensus        78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLL  140 (563)
T PRK06647         78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALL  140 (563)
T ss_pred             HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHH
Confidence                      1122222111      0012344444432       3457999999998875           6788999


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      +.+++  ..+++|++++..  ..+   .+++++|+ ..+.|.+++.+++...+...+.+..           ..++++++
T Consensus       141 K~LEepp~~~vfI~~tte~--~kL---~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~eg-----------i~id~eAl  203 (563)
T PRK06647        141 KTIEEPPPYIVFIFATTEV--HKL---PATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQ-----------IKYEDEAL  203 (563)
T ss_pred             HhhccCCCCEEEEEecCCh--HHh---HHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  567777776543  222   57899998 7899999999999999988776531           24566777


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      ..+. ..+      .|+.|.+.+.+++++
T Consensus       204 ~lLa-~~s------~GdlR~alslLdkli  225 (563)
T PRK06647        204 KWIA-YKS------TGSVRDAYTLFDQVV  225 (563)
T ss_pred             HHHH-HHc------CCCHHHHHHHHHHHH
Confidence            7544 455      466777777887763

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=5.1e-15  Score=144.97  Aligned_cols=187  Identities=16%  Similarity=0.215  Sum_probs=125.5

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.+++.|+.++..               ...+..+||+||||||||++|+++|+.+.+.....        
T Consensus        13 ~~~~eiiGq~~~~~~L~~~~~~---------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~   77 (397)
T PRK14955         13 KKFADITAQEHITRTIQNSLRM---------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV   77 (397)
T ss_pred             CcHhhccChHHHHHHHHHHHHh---------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence            3578899999999988876542               23455699999999999999999999997632110        


Q ss_pred             -C----------------CCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhH
Q 013316          238 -T----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYG  293 (445)
Q Consensus       238 -~----------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~  293 (445)
                       .                ..++.++.+..      ..-..++.+.+..       ...|+||||+|.+..          
T Consensus        78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------  141 (397)
T PRK14955         78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------  141 (397)
T ss_pred             CCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------
Confidence             0                01222221110      0123444444333       457999999999875          


Q ss_pred             HHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccC
Q 013316          294 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH  371 (445)
Q Consensus       294 ~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~  371 (445)
                       ..++.|++.+++  ...++|++++..  ..+   .+++++|+ ..++|++++.+++...+...+++.           .
T Consensus       142 -~~~~~LLk~LEep~~~t~~Il~t~~~--~kl---~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~-----------g  203 (397)
T PRK14955        142 -AAFNAFLKTLEEPPPHAIFIFATTEL--HKI---PATIASRC-QRFNFKRIPLEEIQQQLQGICEAE-----------G  203 (397)
T ss_pred             -HHHHHHHHHHhcCCCCeEEEEEeCCh--HHh---HHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHc-----------C
Confidence             567788888886  355666655432  222   46788898 789999999999999998888753           1


Q ss_pred             CcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          372 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       372 ~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      ..++++++..+. ..+      .|+.|.+.+.++++.
T Consensus       204 ~~i~~~al~~l~-~~s------~g~lr~a~~~L~kl~  233 (397)
T PRK14955        204 ISVDADALQLIG-RKA------QGSMRDAQSILDQVI  233 (397)
T ss_pred             CCCCHHHHHHHH-HHc------CCCHHHHHHHHHHHH
Confidence            246667776444 555      466667777777663

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.65  E-value=5.4e-15  Score=136.65  Aligned_cols=133  Identities=26%  Similarity=0.280  Sum_probs=94.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccccCCchhHHHH---------------
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEFVGHTGPKTRR---------------  263 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~------l~~~~~g~~~~~~~~---------------  263 (445)
                      ...+++|+||||||||++|+++|+.++.       +++.++|..      +.+.+.|........               
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~-------~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDR-------PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQ   92 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccce
Confidence            3468999999999999999999987765       788776653      444444332211110               


Q ss_pred             ------HHH-HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------------------cEEEEEecCch
Q 013316          264 ------RIK-EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------KVVVIFAGYSE  318 (445)
Q Consensus       264 ------~~~-~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------------~~~~i~a~~~~  318 (445)
                            ++. ...+++|+||||+++.+           ++++.|+..|+++                  .+.+|+++++.
T Consensus        93 ~~~~g~l~~A~~~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~  161 (262)
T TIGR02640        93 NWVDNRLTLAVREGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV  161 (262)
T ss_pred             eecCchHHHHHHcCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence                  111 23578999999988876           7788888888652                  34567776665


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l  356 (445)
                      ...-....+++|++|| ..+.++.|+.++..+|+....
T Consensus       162 ~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~  198 (262)
T TIGR02640       162 EYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKT  198 (262)
T ss_pred             cccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence            4332223468899999 789999999999999988754

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PHA02917 ankyrin-like protein; Provisional

Probab=99.64  E-value=1.1e-15  Score=157.95  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHH--HhCCcHHHHHHhhcCCCCCCcccccccC---CC-----------Cc
Q 013316           24 GDLLAFQRLLRENPSLLNERNPVMAQTPLHVS--AGYNKAEIVKSLLEWPGNDKVELEAQNM---YG-----------ET   87 (445)
Q Consensus        24 g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~g~~v~~~d~---~g-----------~t   87 (445)
                      |+.++++.|+ ..|+++|..+. .|+||||+|  +..|+.+++++|+++    |+++|.+|.   .|           .|
T Consensus       114 ~~~e~vk~Ll-~~Gadin~~d~-~g~T~L~~~~a~~~~~~eivklLi~~----Ga~vn~~d~~~~~g~~~~~~~~~~~~t  187 (661)
T PHA02917        114 VDVDLIKVLV-EHGFDLSVKCE-NHRSVIENYVMTDDPVPEIIDLFIEN----GCSVLYEDEDDEYGYAYDDYQPRNCGT  187 (661)
T ss_pred             CCHHHHHHHH-HcCCCCCccCC-CCccHHHHHHHccCCCHHHHHHHHHc----CCCcccccccccccccccccccccccc
Confidence            3445555554 46899999987 799999954  457899999999995    888876543   34           59


Q ss_pred             HHHHHHH-----------cCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCCh--HHHHHHHhhhhhH
Q 013316           88 PLHMAAK-----------NGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSA--KLRELLLWHSEEQ  145 (445)
Q Consensus        88 pLh~A~~-----------~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~--~i~~~ll~~~~~~  145 (445)
                      |||+|+.           .++.+++++|+++|++++.+|.+|.||| |+|...++.  +++++|+. |++.
T Consensus       188 ~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpL-h~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        188 VLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTAL-QYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             HHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHH-HHHHHcCCCcHHHHHHHHh-CCcc
Confidence            9999986           4689999999999999999999999999 666666653  79999975 6543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=8.9e-16  Score=111.61  Aligned_cols=101  Identities=27%  Similarity=0.398  Sum_probs=92.4

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 013316           15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK   94 (445)
Q Consensus        15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~   94 (445)
                      -.+.|++++|.++.|+..+.. +.++|..-  .|++|||||+-+|..+++++|+..    |++++.+|++|-|||..|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~~--ggR~plhyAAD~GQl~ilefli~i----GA~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEIY--GGRTPLHYAADYGQLSILEFLISI----GANIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHHh--CCcccchHhhhcchHHHHHHHHHh----ccccCCccccCCcHHHHHHH
Confidence            457899999999999998865 57777665  599999999999999999999995    99999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316           95 NGCNEAAKLLLAHGAFIEAKANEGKTPL  122 (445)
Q Consensus        95 ~g~~~~~~~Ll~~ga~~~~~~~~g~tpl  122 (445)
                      .||.+||++|+++||+-..+..+|.+.+
T Consensus        77 EGH~~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             HhhHHHHHHHHHcCcccceeCCCchhHH
Confidence            9999999999999999999999998877

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.64  E-value=1e-15  Score=163.73  Aligned_cols=141  Identities=16%  Similarity=0.167  Sum_probs=124.6

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      ...+.++||.||..|+.+.++.++. .|.++|..|. .|+||||+||..|+.+++++|+++    |+++|.+|.+|+|||
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~----gadin~~d~~G~TpL  595 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLK-AKLDPDIGDS-KGRTPLHIAASKGYEDCVLVLLKH----ACNVHIRDANGNTAL  595 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcChHHHHHHHHhc----CCCCCCcCCCCCCHH
Confidence            3456899999999999999998885 6899999997 799999999999999999999995    889999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      |+|+..|+.+++++|++.++..+  ...+.+|| +.|+..++.+++++|+++|++++.++..+.++...+
T Consensus       596 ~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L-~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A  662 (823)
T PLN03192        596 WNAISAKHHKIFRILYHFASISD--PHAAGDLL-CTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA  662 (823)
T ss_pred             HHHHHhCCHHHHHHHHhcCcccC--cccCchHH-HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999887654  34577999 889999999999999999999888777666665544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.64  E-value=6.3e-16  Score=125.87  Aligned_cols=117  Identities=26%  Similarity=0.300  Sum_probs=100.8

Q ss_pred             CccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCC
Q 013316            6 DRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY   84 (445)
Q Consensus         6 ~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~   84 (445)
                      .+|.++ .|.||||-|+.+|+++++..|+. .+++++.++. .||||||.||..++.+++.+||.+    |+|||+....
T Consensus        89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~-~GWTPLhSAckWnN~~va~~LLqh----gaDVnA~t~g  162 (228)
T KOG0512|consen   89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTN-EGWTPLHSACKWNNFEVAGRLLQH----GADVNAQTKG  162 (228)
T ss_pred             cccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccc-cCccchhhhhcccchhHHHHHHhc----cCcccccccc
Confidence            456666 69999999999999999998885 5899999997 799999999999999999999996    9999999999


Q ss_pred             CCcHHHHHHHcCCHH-HHHHHH-hcCCCCcccccCCCChhhhhhcCC
Q 013316           85 GETPLHMAAKNGCNE-AAKLLL-AHGAFIEAKANEGKTPLDHLSNGP  129 (445)
Q Consensus        85 g~tpLh~A~~~g~~~-~~~~Ll-~~ga~~~~~~~~g~tpl~~~a~~~  129 (445)
                      -.||||+||...+.. .+.+|+ ..+.++..++..+.||+ .+|.+.
T Consensus       163 ~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~-~iARRT  208 (228)
T KOG0512|consen  163 LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAF-DIARRT  208 (228)
T ss_pred             cchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHH-HHHHHh
Confidence            999999999887664 455555 56888888999999999 566553

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.64  E-value=8.7e-15  Score=149.10  Aligned_cols=186  Identities=20%  Similarity=0.277  Sum_probs=126.5

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC-CCC-----
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-PTD-----  239 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~-~~~-----  239 (445)
                      ..|++++|++.+++.|+..+..               ...+..+||+||+|||||++|+++|+.+.+...- ...     
T Consensus        15 ~~f~dIiGQe~~v~~L~~aI~~---------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C   79 (725)
T PRK07133         15 KTFDDIVGQDHIVQTLKNIIKS---------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC   79 (725)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence            3688899999999988886542               1234557999999999999999999998763210 000     


Q ss_pred             --------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc
Q 013316          240 --------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM  304 (445)
Q Consensus       240 --------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~  304 (445)
                              .+++++.+.      ..+...++.+++.+       .+.|++|||+|.+..           .+++.|+..|
T Consensus        80 ~~~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtL  142 (725)
T PRK07133         80 IENVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTL  142 (725)
T ss_pred             HHhhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHh
Confidence                    111111100      01123355555443       347999999999876           6789999999


Q ss_pred             cC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHH
Q 013316          305 DG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL  382 (445)
Q Consensus       305 ~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  382 (445)
                      ++  ..+++|++|+...  .+   .+.+++|| ..+.|.+++.+++...+...+.+..           ..++.+++. .
T Consensus       143 EEPP~~tifILaTte~~--KL---l~TI~SRc-q~ieF~~L~~eeI~~~L~~il~keg-----------I~id~eAl~-~  204 (725)
T PRK07133        143 EEPPKHVIFILATTEVH--KI---PLTILSRV-QRFNFRRISEDEIVSRLEFILEKEN-----------ISYEKNALK-L  204 (725)
T ss_pred             hcCCCceEEEEEcCChh--hh---hHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH-H
Confidence            87  4567777765432  22   57789999 7999999999999999998877642           234555655 4


Q ss_pred             HHHHHHHhhhcccCchhhHHHHHHH
Q 013316          383 IEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       383 ~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      +...+      .|+.|.+.++++++
T Consensus       205 LA~lS------~GslR~AlslLekl  223 (725)
T PRK07133        205 IAKLS------SGSLRDALSIAEQV  223 (725)
T ss_pred             HHHHc------CCCHHHHHHHHHHH
Confidence            55555      35556666666655

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.64  E-value=2.3e-14  Score=130.23  Aligned_cols=189  Identities=12%  Similarity=0.151  Sum_probs=120.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM  284 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~  284 (445)
                      ...+++|+||||||||++++++++.+...+.    .+..++......     ....+.+.++.  ..+|+|||++.+..+
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~----~v~y~~~~~~~~-----~~~~~~~~~~~--~dlliiDdi~~~~~~  112 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGR----AVGYVPLDKRAW-----FVPEVLEGMEQ--LSLVCIDNIECIAGD  112 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCC----eEEEEEHHHHhh-----hhHHHHHHhhh--CCEEEEeChhhhcCC
Confidence            3458999999999999999999998875322    344444433211     11122233332  258999999998753


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccccc
Q 013316          285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTED  362 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~  362 (445)
                      .+     .....+..+...++.++..+|++++..+.. .-...|.|++|+.  .++.+++|+.+++.++++......   
T Consensus       113 ~~-----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~-l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~---  183 (235)
T PRK08084        113 EL-----WEMAIFDLYNRILESGRTRLLITGDRPPRQ-LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR---  183 (235)
T ss_pred             HH-----HHHHHHHHHHHHHHcCCCeEEEeCCCChHH-cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc---
Confidence            21     111333444455566665566666644433 2223699999995  788999999999999998766542   


Q ss_pred             ccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          363 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                            .  -.++++++.++..+.       .++.|.+.+++++..+. ...         ....||.+.++++++
T Consensus       184 ------~--~~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~-~l~---------~~~~it~~~~k~~l~  234 (235)
T PRK08084        184 ------G--FELPEDVGRFLLKRL-------DREMRTLFMTLDQLDRA-SIT---------AQRKLTIPFVKEILK  234 (235)
T ss_pred             ------C--CCCCHHHHHHHHHhh-------cCCHHHHHHHHHHHHHH-HHh---------cCCCCCHHHHHHHHc
Confidence                  1  245667777666444       67888899999886211 110         012478777777653

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.63  E-value=1.9e-14  Score=143.14  Aligned_cols=187  Identities=19%  Similarity=0.240  Sum_probs=125.6

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-----
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----  240 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~-----  240 (445)
                      ..|++++|++.+...+...+..               ...+..+||+||+|||||++|+.+|+.+.+.......+     
T Consensus        13 ~~f~diiGq~~i~~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~   77 (486)
T PRK14953         13 KFFKEVIGQEIVVRILKNAVKL---------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE   77 (486)
T ss_pred             CcHHHccChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence            3678899999999988886542               12334478999999999999999999987532111111     


Q ss_pred             ------------eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          241 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       241 ------------~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                                  +++++.+.-      ..-..++.+.+.+       ...|++|||+|.+..           .+++.|+
T Consensus        78 nc~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLL  140 (486)
T PRK14953         78 NCVEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALL  140 (486)
T ss_pred             HHHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHH
Confidence                        222221110      0122234443332       347999999998875           6678888


Q ss_pred             hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                      ..+++  ...++|++++...  .+   .+++++|+ ..+.|++|+.+++...+...+++..           ..++++++
T Consensus       141 k~LEepp~~~v~Il~tt~~~--kl---~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg-----------i~id~~al  203 (486)
T PRK14953        141 KTLEEPPPRTIFILCTTEYD--KI---PPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK-----------IEYEEKAL  203 (486)
T ss_pred             HHHhcCCCCeEEEEEECCHH--HH---HHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            88886  3566666655322  22   46788898 6899999999999999999888642           24556676


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      .. +...+      .||.|.+.+.++.+.
T Consensus       204 ~~-La~~s------~G~lr~al~~Ldkl~  225 (486)
T PRK14953        204 DL-LAQAS------EGGMRDAASLLDQAS  225 (486)
T ss_pred             HH-HHHHc------CCCHHHHHHHHHHHH
Confidence            64 44455      567777888888773

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.63  E-value=5.3e-15  Score=145.08  Aligned_cols=196  Identities=20%  Similarity=0.244  Sum_probs=142.5

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++++|++.+...|...+..-               +-....||+||.|||||++||.+|+.+++.......|+..+
T Consensus        12 P~~F~evvGQe~v~~~L~nal~~~---------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C   76 (515)
T COG2812          12 PKTFDDVVGQEHVVKTLSNALENG---------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC   76 (515)
T ss_pred             cccHHHhcccHHHHHHHHHHHHhC---------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence            457889999999999999865432               34557899999999999999999999988653222233222


Q ss_pred             -eccccccc-cc---------CCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC
Q 013316          245 -QRTDLVGE-FV---------GHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG  306 (445)
Q Consensus       245 -~~~~l~~~-~~---------g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~  306 (445)
                       .|-.+... ++         ..+-..++.+.++.       ++.|.+|||+|.|..           .+.+.||+-+++
T Consensus        77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE  145 (515)
T COG2812          77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE  145 (515)
T ss_pred             hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence             11111111 11         11335667777665       458999999999987           889999999997


Q ss_pred             --CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH
Q 013316          307 --GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  384 (445)
Q Consensus       307 --~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (445)
                        ..+++|+|||.....     -+.+++|| +.+.|...+.+++...+..++.+..           ..++++++. +++
T Consensus       146 PP~hV~FIlATTe~~Ki-----p~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~-----------I~~e~~aL~-~ia  207 (515)
T COG2812         146 PPSHVKFILATTEPQKI-----PNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEG-----------INIEEDALS-LIA  207 (515)
T ss_pred             CccCeEEEEecCCcCcC-----chhhhhcc-ccccccCCCHHHHHHHHHHHHHhcC-----------CccCHHHHH-HHH
Confidence              568889988765443     57789999 9999999999999999999998752           345667777 555


Q ss_pred             HHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          385 KETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       385 ~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      +..      .|..|+.-.++++++..
T Consensus       208 ~~a------~Gs~RDalslLDq~i~~  227 (515)
T COG2812         208 RAA------EGSLRDALSLLDQAIAF  227 (515)
T ss_pred             HHc------CCChhhHHHHHHHHHHc
Confidence            555      34457777788877443

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.63  E-value=1.7e-14  Score=140.56  Aligned_cols=187  Identities=17%  Similarity=0.216  Sum_probs=126.3

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC-----CCC
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----TDR  240 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-----~~~  240 (445)
                      ..|++++|++.+++.+.+.+..               ...+.++|||||||+|||++|+++++.+...+...     ...
T Consensus        14 ~~~~~iig~~~~~~~l~~~i~~---------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~   78 (367)
T PRK14970         14 QTFDDVVGQSHITNTLLNAIEN---------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN   78 (367)
T ss_pred             CcHHhcCCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence            3678899999999888876542               23456899999999999999999999887633211     111


Q ss_pred             eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEE
Q 013316          241 VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV  311 (445)
Q Consensus       241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~  311 (445)
                      +++++...      ......++.+++++       ...||||||+|.+.+           ..++.|+..+++  ...++
T Consensus        79 ~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~~~~~~  141 (367)
T PRK14970         79 IFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPPAHAIF  141 (367)
T ss_pred             eEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCCCceEE
Confidence            22222211      11234555666543       347999999998865           557788887775  33455


Q ss_pred             EEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          312 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       312 i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      |++++...     ...|++++|+ ..+.|++|+.+++..++...+.+..           ..++++++..++ ..+    
T Consensus       142 Il~~~~~~-----kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~al~~l~-~~~----  199 (367)
T PRK14970        142 ILATTEKH-----KIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEG-----------IKFEDDALHIIA-QKA----  199 (367)
T ss_pred             EEEeCCcc-----cCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HhC----
Confidence            55544321     1257888998 6799999999999999998887642           245667777555 444    


Q ss_pred             hcccCchhhHHHHHHHH
Q 013316          392 RREMNGGLVDPMLVNAR  408 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~  408 (445)
                        .++.|.+.+.+++..
T Consensus       200 --~gdlr~~~~~lekl~  214 (367)
T PRK14970        200 --DGALRDALSIFDRVV  214 (367)
T ss_pred             --CCCHHHHHHHHHHHH
Confidence              466777777777764

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.62  E-value=1.4e-14  Score=143.23  Aligned_cols=186  Identities=18%  Similarity=0.218  Sum_probs=125.1

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.++..+..++..               ...+..+||+||||||||++|+.+|+.+.......        
T Consensus        14 ~~~~diiGq~~~v~~L~~~i~~---------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c   78 (451)
T PRK06305         14 QTFSEILGQDAVVAVLKNALRF---------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC   78 (451)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence            4688999999999988876542               12345689999999999999999999986531100        


Q ss_pred             ----------CCCeEEeecccccccccCCchhHHHHHHH-------HccCcEEEEcCccccccCCCCCCchhHHHHHHHH
Q 013316          238 ----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEI  300 (445)
Q Consensus       238 ----------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-------~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~l  300 (445)
                                ...+++++++..    .|  -..++.+.+       .+...|+||||+|.+..           ..++.|
T Consensus        79 ~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~L  141 (451)
T PRK06305         79 ASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSL  141 (451)
T ss_pred             HHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHH
Confidence                      012333322111    01  122332221       13568999999998875           678889


Q ss_pred             HhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316          301 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  378 (445)
Q Consensus       301 l~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  378 (445)
                      ++.|++  +.+++|++++..  ..   ..+++++|+ ..++|++++.+++...+...+++..           ..++.++
T Consensus       142 Lk~lEep~~~~~~Il~t~~~--~k---l~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg-----------~~i~~~a  204 (451)
T PRK06305        142 LKTLEEPPQHVKFFLATTEI--HK---IPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG-----------IETSREA  204 (451)
T ss_pred             HHHhhcCCCCceEEEEeCCh--Hh---cchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999987  566677766433  22   257899999 7899999999999999988877531           2456667


Q ss_pred             HHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          379 IAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       379 l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      +..++ ..+      .||.|.+.+.++..
T Consensus       205 l~~L~-~~s------~gdlr~a~~~Lekl  226 (451)
T PRK06305        205 LLPIA-RAA------QGSLRDAESLYDYV  226 (451)
T ss_pred             HHHHH-HHc------CCCHHHHHHHHHHH
Confidence            66444 555      45566666667665

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.62  E-value=4e-15  Score=138.03  Aligned_cols=130  Identities=17%  Similarity=0.084  Sum_probs=108.6

Q ss_pred             CCCccCccCC-----CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCC
Q 013316            1 MQKNQDRRSR-----SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK   75 (445)
Q Consensus         1 l~~~~~~~~~-----~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g   75 (445)
                      ++.|++++..     ..|.||||+|+..|+.++++.|+ .+|+++|..++..|.||||+|+..++.+++++|+.+    |
T Consensus        53 L~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~----G  127 (300)
T PHA02884         53 LKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSY----G  127 (300)
T ss_pred             HHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHC----C
Confidence            4679999985     37999999999999999998777 479999986533699999999999999999999995    8


Q ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        76 ~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      ++++.+|..|.||||+|+..++.+++.++.  |..   .+..+.+|. .+.   .+.+++++|.+++.-
T Consensus       128 Adin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~-~~~---~n~ei~~~Lish~vl  187 (300)
T PHA02884        128 ADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPK-KIL---INFDILKILVSHFIL  187 (300)
T ss_pred             CCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChh-hhh---ccHHHHHHHHHHHHH
Confidence            999999999999999999999888876554  332   456677887 432   357899999999874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.61  E-value=4.9e-15  Score=149.71  Aligned_cols=132  Identities=17%  Similarity=0.068  Sum_probs=114.5

Q ss_pred             CCCCchHhHHHHHcC---CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC--cHHHHHHhhcCCCCCCcccccccCC
Q 013316           10 RSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMY   84 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~g~~v~~~d~~   84 (445)
                      ...|.||||+|+..|   +.++++.|| .+|++++.+|. .|+||||+|+..+  +.++|++|++.+  .+++++..+.-
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLL-s~GAdin~kD~-~G~TPLh~Aa~~~~~~~eIv~~Ll~~~--~~~~~~~~~~~  113 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLL-SRGVERLCRNN-EGLTPLGVYSKRKYVKSQIVHLLISSY--SNASNELTSNI  113 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHH-hCCCCCcccCC-CCCChHHHHHHcCCCcHHHHHHHHhcC--CCCCccccccc
Confidence            347999999999997   589998777 57999999997 8999999999976  799999999963  24566878888


Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHh-cCCCCccccc-----CCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316           85 GETPLHMAAK--NGCNEAAKLLLA-HGAFIEAKAN-----EGKTPLDHLSNGPGSAKLRELLLWHSEEQR  146 (445)
Q Consensus        85 g~tpLh~A~~--~g~~~~~~~Ll~-~ga~~~~~~~-----~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~  146 (445)
                      +.+|||.++.  .++.+++++|+. .|++++...+     +|-+|+ +++...++.+++++|+.+|++..
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~-yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDI-YVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhh-hHhcCCCchHHHHHHHHcCCccc
Confidence            9999999988  899999999996 7789876643     789999 99999999999999999999874

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.61  E-value=3.9e-14  Score=143.86  Aligned_cols=193  Identities=16%  Similarity=0.220  Sum_probs=126.1

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.+++.|++.+..               ...+..+||+||+|||||++|+.+|+.+.+.....        
T Consensus        13 ~~f~eivGQe~i~~~L~~~i~~---------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~   77 (620)
T PRK14954         13 SKFADITAQEHITHTIQNSLRM---------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV   77 (620)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence            3678899999999988886542               23455699999999999999999999997632110        


Q ss_pred             -CCCeEEeeccccc-------ccccCC---chhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHH
Q 013316          238 -TDRVTEVQRTDLV-------GEFVGH---TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE  299 (445)
Q Consensus       238 -~~~~~~~~~~~l~-------~~~~g~---~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~  299 (445)
                       ...-.+-+|..+.       ..+-|.   ....++.+.+..       ...|++|||+|.+..           ..++.
T Consensus        78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~na  146 (620)
T PRK14954         78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFNA  146 (620)
T ss_pred             CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHHH
Confidence             0000011111110       001111   123445544333       457999999998875           66889


Q ss_pred             HHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316          300 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  377 (445)
Q Consensus       300 ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  377 (445)
                      |++.|++  ...++|++++..  ..+   -+.+++|+ ..+.|.+++.+++...+...+++..           ..++.+
T Consensus       147 LLK~LEePp~~tv~IL~t~~~--~kL---l~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~eg-----------i~I~~e  209 (620)
T PRK14954        147 FLKTLEEPPPHAIFIFATTEL--HKI---PATIASRC-QRFNFKRIPLDEIQSQLQMICRAEG-----------IQIDAD  209 (620)
T ss_pred             HHHHHhCCCCCeEEEEEeCCh--hhh---hHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcC-----------CCCCHH
Confidence            9999987  456666665432  222   46789998 8999999999999999888777541           245666


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          378 AIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      ++.. +...+      .|+.|.+.+.+++..
T Consensus       210 al~~-La~~s------~Gdlr~al~eLeKL~  233 (620)
T PRK14954        210 ALQL-IARKA------QGSMRDAQSILDQVI  233 (620)
T ss_pred             HHHH-HHHHh------CCCHHHHHHHHHHHH
Confidence            7664 44555      455666666676653

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.60  E-value=7.2e-15  Score=142.11  Aligned_cols=158  Identities=20%  Similarity=0.211  Sum_probs=105.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC---------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP---------  237 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~---------  237 (445)
                      .|++|+|++.+++.|++.+..-.-      .....+...+..+||+||||+|||++|+.+|+.+.+.....         
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~------~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C   76 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARA------DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRAC   76 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccc------cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHH
Confidence            578899999999999987653210      00111222466799999999999999999999886632100         


Q ss_pred             ------CCC-eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316          238 ------TDR-VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV  303 (445)
Q Consensus       238 ------~~~-~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~  303 (445)
                            ..| +..+.+..   ..  -.-..++++++.+       ...|+||||+|.+.+           ..++.|++.
T Consensus        77 ~~~~~~~hpD~~~i~~~~---~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-----------~aanaLLk~  140 (394)
T PRK07940         77 RTVLAGTHPDVRVVAPEG---LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-----------RAANALLKA  140 (394)
T ss_pred             HHHhcCCCCCEEEecccc---cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------HHHHHHHHH
Confidence                  001 11111110   00  1223456666544       336999999999976           677899999


Q ss_pred             ccC---CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHH
Q 013316          304 MDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH  353 (445)
Q Consensus       304 ~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~  353 (445)
                      |++   +.++++++++..   .   ..|++++|| ..+.|++|+.+++.+.+.
T Consensus       141 LEep~~~~~fIL~a~~~~---~---llpTIrSRc-~~i~f~~~~~~~i~~~L~  186 (394)
T PRK07940        141 VEEPPPRTVWLLCAPSPE---D---VLPTIRSRC-RHVALRTPSVEAVAEVLV  186 (394)
T ss_pred             hhcCCCCCeEEEEECChH---H---ChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence            987   445555554422   2   268899999 899999999999888776

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.60  E-value=6.3e-14  Score=143.54  Aligned_cols=186  Identities=19%  Similarity=0.251  Sum_probs=124.4

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.+++.|..++..               ...+..+||+||+|||||++|+.+++.+.+.....        
T Consensus        13 ~~~~eiiGq~~~~~~L~~~i~~---------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c   77 (585)
T PRK14950         13 QTFAELVGQEHVVQTLRNAIAE---------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC   77 (585)
T ss_pred             CCHHHhcCCHHHHHHHHHHHHh---------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence            3678899999999998876542               12344579999999999999999999986522100        


Q ss_pred             ----------CCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHH
Q 013316          238 ----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI  300 (445)
Q Consensus       238 ----------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~l  300 (445)
                                ...+++++.+..      ..-..++.+++.       +...|+||||+|.+..           +.++.|
T Consensus        78 ~~c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naL  140 (585)
T PRK14950         78 EMCRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNAL  140 (585)
T ss_pred             HHHHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHH
Confidence                      011233332111      122334444432       2458999999998875           678889


Q ss_pred             HhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316          301 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  378 (445)
Q Consensus       301 l~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  378 (445)
                      ++.+++  ...++|++++..  ..+   .+.+++|+ ..+.|+.++..++..++...+.+..           ..++.++
T Consensus       141 Lk~LEepp~~tv~Il~t~~~--~kl---l~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~eg-----------l~i~~ea  203 (585)
T PRK14950        141 LKTLEEPPPHAIFILATTEV--HKV---PATILSRC-QRFDFHRHSVADMAAHLRKIAAAEG-----------INLEPGA  203 (585)
T ss_pred             HHHHhcCCCCeEEEEEeCCh--hhh---hHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            998886  455566554432  222   46688898 7899999999999999988877641           2355667


Q ss_pred             HHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          379 IAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       379 l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      +..+. ..+      .||.|.+.+.+++.
T Consensus       204 l~~La-~~s------~Gdlr~al~~LekL  225 (585)
T PRK14950        204 LEAIA-RAA------TGSMRDAENLLQQL  225 (585)
T ss_pred             HHHHH-HHc------CCCHHHHHHHHHHH
Confidence            66444 454      46677777777765

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.60  E-value=2.6e-14  Score=136.87  Aligned_cols=187  Identities=26%  Similarity=0.319  Sum_probs=119.6

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++++|++.+++.+..++.                ....++++|+||||||||++|+.+++.+...+.  ...++.++
T Consensus        14 ~~~~~~~g~~~~~~~l~~~i~----------------~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~--~~~~i~~~   75 (319)
T PRK00440         14 RTLDEIVGQEEIVERLKSYVK----------------EKNMPHLLFAGPPGTGKTTAALALARELYGEDW--RENFLELN   75 (319)
T ss_pred             CcHHHhcCcHHHHHHHHHHHh----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc--ccceEEec
Confidence            357789999999988888653                223457999999999999999999998754321  22456665


Q ss_pred             cccccccccCCchhHHHHHHH-----HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCch
Q 013316          246 RTDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSE  318 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~-----~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~  318 (445)
                      +++..+..  .....+.....     .+...+|+|||+|.+..           ..++.|+..++.  ....+|++++..
T Consensus        76 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~~~~~lIl~~~~~  142 (319)
T PRK00440         76 ASDERGID--VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYSQNTRFILSCNYS  142 (319)
T ss_pred             cccccchH--HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence            54321100  00011111111     12346999999998865           344566666653  334444444322


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  398 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r  398 (445)
                      .  .   ..+++.+|+ ..+.|++++.+++..+++.++++..           ..++++++..+. ..+      .||.|
T Consensus       143 ~--~---l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~-----------~~i~~~al~~l~-~~~------~gd~r  198 (319)
T PRK00440        143 S--K---IIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEG-----------IEITDDALEAIY-YVS------EGDMR  198 (319)
T ss_pred             c--c---cchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHc------CCCHH
Confidence            1  1   145678888 5799999999999999999887642           245677877555 444      45666


Q ss_pred             hhHHHHHHH
Q 013316          399 LVDPMLVNA  407 (445)
Q Consensus       399 ~l~~~~~~~  407 (445)
                      .+.+.++.+
T Consensus       199 ~~~~~l~~~  207 (319)
T PRK00440        199 KAINALQAA  207 (319)
T ss_pred             HHHHHHHHH
Confidence            677777765

>PRK06893 DNA replication initiation factor; Validated

Probab=99.59  E-value=4.1e-14  Score=128.16  Aligned_cols=185  Identities=12%  Similarity=0.173  Sum_probs=111.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQ  285 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~  285 (445)
                      +.++|+||||||||++++++++++...+.    ....++.....        ....+.++.. ...+|+|||++.+.+..
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~----~~~y~~~~~~~--------~~~~~~~~~~~~~dlLilDDi~~~~~~~  107 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQR----TAIYIPLSKSQ--------YFSPAVLENLEQQDLVCLDDLQAVIGNE  107 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEeeHHHhh--------hhhHHHHhhcccCCEEEEeChhhhcCCh
Confidence            45899999999999999999999865332    33333332210        0111233333 34699999999987532


Q ss_pred             CCCCchhHHHHHHHHH-hhccCCcEEEEEecCchhHHHHHhhCccccccc--ccceeCCCCCHHHHHHHHHHHHhccccc
Q 013316          286 KADDKDYGIEALEEIM-SVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED  362 (445)
Q Consensus       286 ~~~~~~~~~~~~~~ll-~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~  362 (445)
                      .      ..+.+-.++ ...+.+..++|++++..+.. +-...|.|++|+  ...+.+++|+.+++.+|++..+...   
T Consensus       108 ~------~~~~l~~l~n~~~~~~~~illits~~~p~~-l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~---  177 (229)
T PRK06893        108 E------WELAIFDLFNRIKEQGKTLLLISADCSPHA-LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR---  177 (229)
T ss_pred             H------HHHHHHHHHHHHHHcCCcEEEEeCCCChHH-ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc---
Confidence            1      112222222 22233444444443332222 111258899987  3688999999999999999887653   


Q ss_pred             ccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          363 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                              .-.++++++..+..+ +      .++.|.+.+++++..+ ..  .       .....||...+++++.
T Consensus       178 --------~l~l~~~v~~~L~~~-~------~~d~r~l~~~l~~l~~-~~--~-------~~~~~it~~~v~~~L~  228 (229)
T PRK06893        178 --------GIELSDEVANFLLKR-L------DRDMHTLFDALDLLDK-AS--L-------QAQRKLTIPFVKEILG  228 (229)
T ss_pred             --------CCCCCHHHHHHHHHh-c------cCCHHHHHHHHHHHHH-HH--H-------hcCCCCCHHHHHHHhc
Confidence                    124566777755544 3      5678888888887621 11  1       0112588888887653

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.59  E-value=4.1e-16  Score=134.89  Aligned_cols=151  Identities=25%  Similarity=0.344  Sum_probs=75.5

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC------------
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI------------  235 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~------------  235 (445)
                      |.+|+||+.+|+.+.-.+                  ....|+||+||||||||++|+.++..+.....            
T Consensus         2 f~dI~GQe~aKrAL~iAA------------------aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~   63 (206)
T PF01078_consen    2 FSDIVGQEEAKRALEIAA------------------AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSV   63 (206)
T ss_dssp             TCCSSSTHHHHHHHHHHH------------------HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT
T ss_pred             hhhhcCcHHHHHHHHHHH------------------cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccc
Confidence            568999999998887532                  13579999999999999999999987743211            


Q ss_pred             ---------CCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC
Q 013316          236 ---------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG  306 (445)
Q Consensus       236 ---------~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~  306 (445)
                               +...||.....+.-...++|.........+..|.+|||||||+           +.+...+++.|++.+++
T Consensus        64 ~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~-----------~ef~~~vld~Lr~ple~  132 (206)
T PF01078_consen   64 AGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDEL-----------NEFDRSVLDALRQPLED  132 (206)
T ss_dssp             ---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECET-----------TTS-HHHHHHHHHHHHH
T ss_pred             ccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechh-----------hhcCHHHHHHHHHHHHC
Confidence                     1122333333332222233322222223567889999999999           66667999999999987


Q ss_pred             Cc---------------EEEEEecCchhHHHHH------------------hhCcccccccccceeCCCCCHHH
Q 013316          307 GK---------------VVVIFAGYSEPMKRVI------------------ASNEGFCRRVTKFFHFNDFNSEE  347 (445)
Q Consensus       307 ~~---------------~~~i~a~~~~~~~~~~------------------~~~~~l~~R~~~~i~~~~~~~~~  347 (445)
                      +.               +.+|+|.|+-+=-.+.                  ....+|++|||..+.++..+.+|
T Consensus       133 g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~  206 (206)
T PF01078_consen  133 GEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE  206 (206)
T ss_dssp             SBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred             CeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            53               4777776544332211                  11255777888888777776543

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=99.59  E-value=8.1e-15  Score=125.97  Aligned_cols=180  Identities=23%  Similarity=0.294  Sum_probs=118.2

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..+.+|+|.++..+++.-+.+                .+..+|++|.|||||||||.+.++|+++-  |...+..+.+++
T Consensus        24 ~~l~dIVGNe~tv~rl~via~----------------~gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~ke~vLELN   85 (333)
T KOG0991|consen   24 SVLQDIVGNEDTVERLSVIAK----------------EGNMPNLIISGPPGTGKTTSILCLARELL--GDSYKEAVLELN   85 (333)
T ss_pred             hHHHHhhCCHHHHHHHHHHHH----------------cCCCCceEeeCCCCCchhhHHHHHHHHHh--ChhhhhHhhhcc
Confidence            457889999999998887544                34667999999999999999999999873  222344678888


Q ss_pred             cccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc--CCcEEEEEe-c
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIFA-G  315 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~i~a-~  315 (445)
                      +|+-.+..+   -.+..+.|.+.       +..|++|||+|+...           .+|..|-+-|+  ++.-.+.++ +
T Consensus        86 ASdeRGIDv---VRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-----------gAQQAlRRtMEiyS~ttRFalaCN  151 (333)
T KOG0991|consen   86 ASDERGIDV---VRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-----------GAQQALRRTMEIYSNTTRFALACN  151 (333)
T ss_pred             CccccccHH---HHHHHHHHHHhhccCCCCceeEEEeeccchhhh-----------HHHHHHHHHHHHHcccchhhhhhc
Confidence            887544321   12223455433       348999999998876           44555555554  233333333 3


Q ss_pred             CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ....+      -+++.+|| ..++|..++..++..-+....+...       +    ..+++.++.++ .-..||+|...
T Consensus       152 ~s~KI------iEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ek-------v----~yt~dgLeaii-fta~GDMRQal  212 (333)
T KOG0991|consen  152 QSEKI------IEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEK-------V----NYTDDGLEAII-FTAQGDMRQAL  212 (333)
T ss_pred             chhhh------hhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhC-------C----CCCcchHHHhh-hhccchHHHHH
Confidence            33333      24567788 8889999999888777776665432       2    34445666544 44556776655


Q ss_pred             C
Q 013316          396 N  396 (445)
Q Consensus       396 n  396 (445)
                      |
T Consensus       213 N  213 (333)
T KOG0991|consen  213 N  213 (333)
T ss_pred             H
Confidence            4

>TIGR00368 Mg chelatase-related protein

Probab=99.58  E-value=1.8e-14  Score=143.16  Aligned_cols=153  Identities=22%  Similarity=0.273  Sum_probs=107.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc-------------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV-------------  233 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~-------------  233 (445)
                      .|.++.|++.+++.+.-.                  .....+++|.||||||||++|+.++..+...             
T Consensus       190 d~~dv~Gq~~~~~al~~a------------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s  251 (499)
T TIGR00368       190 DLKDIKGQQHAKRALEIA------------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS  251 (499)
T ss_pred             CHHHhcCcHHHHhhhhhh------------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence            678899999887655532                  3345789999999999999999999754210             


Q ss_pred             --------CCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316          234 --------GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  305 (445)
Q Consensus       234 --------~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  305 (445)
                              ......||...+++......+|.........+..|.+|||||||++.+.+           .+++.|++.|+
T Consensus       252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~-----------~~~~~L~~~LE  320 (499)
T TIGR00368       252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR-----------SVLDALREPIE  320 (499)
T ss_pred             chhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH-----------HHHHHHHHHHH
Confidence                    00223466666666544445553322334578899999999999977765           78888888887


Q ss_pred             CC---------------cEEEEEecCchh-----------------H-HHHHhhCcccccccccceeCCCCCHHHH
Q 013316          306 GG---------------KVVVIFAGYSEP-----------------M-KRVIASNEGFCRRVTKFFHFNDFNSEEL  348 (445)
Q Consensus       306 ~~---------------~~~~i~a~~~~~-----------------~-~~~~~~~~~l~~R~~~~i~~~~~~~~~~  348 (445)
                      ++               ++.+|+++++-+                 . .......++|++|||..+.+++++.+++
T Consensus       321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l  396 (499)
T TIGR00368       321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL  396 (499)
T ss_pred             cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence            64               357788777532                 0 1122456889999999999998876554

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.58  E-value=1.5e-14  Score=136.51  Aligned_cols=160  Identities=21%  Similarity=0.267  Sum_probs=104.7

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC--------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT--------  238 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~--------  238 (445)
                      .|.+++|++.++..+.-.+  +              .....|+||+|+||||||++||+++..+........        
T Consensus         6 ~f~~i~Gq~~~~~~l~~~~--~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~   69 (334)
T PRK13407          6 PFSAIVGQEEMKQAMVLTA--I--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP   69 (334)
T ss_pred             CHHHhCCHHHHHHHHHHHH--h--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence            3678999999987766411  0              012368999999999999999999999842111100        


Q ss_pred             ------------------CCeEEeecccccccccCC--------chh-HH-HHHHHHccCcEEEEcCccccccCCCCCCc
Q 013316          239 ------------------DRVTEVQRTDLVGEFVGH--------TGP-KT-RRRIKEAEGGILFVDEAYRLIPMQKADDK  290 (445)
Q Consensus       239 ------------------~~~~~~~~~~l~~~~~g~--------~~~-~~-~~~~~~a~~~il~lDEid~l~~~~~~~~~  290 (445)
                                        .+|+.+..+.-...++|.        ++. .. ...+..+.+|+||||||+.+.+       
T Consensus        70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------  142 (334)
T PRK13407         70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------  142 (334)
T ss_pred             cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence                              122222222222224442        011 11 2245567789999999988876       


Q ss_pred             hhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeCCCCCH-HHHHHHHHH
Q 013316          291 DYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHI  354 (445)
Q Consensus       291 ~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~  354 (445)
                          +.++.|++.|+++.               +++|++.++..- .   ..++|.+||...+.++.|+. +++.+|+..
T Consensus       143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~-~---l~~aLldRF~~~v~v~~~~~~~e~~~il~~  214 (334)
T PRK13407        143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG-E---LRPQLLDRFGLSVEVRSPRDVETRVEVIRR  214 (334)
T ss_pred             ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC-C---CCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence                78889999887643               455555444221 1   36789999999999998886 888999987


Q ss_pred             HHh
Q 013316          355 KMN  357 (445)
Q Consensus       355 ~l~  357 (445)
                      ...
T Consensus       215 ~~~  217 (334)
T PRK13407        215 RDA  217 (334)
T ss_pred             hhc
Confidence            543

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.58  E-value=7.4e-14  Score=131.94  Aligned_cols=159  Identities=21%  Similarity=0.277  Sum_probs=108.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE----
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT----  242 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~----  242 (445)
                      -|.+|+|++++|..|.-.+.                .....++||.||+|||||++||.+++.+.....+...+|.    
T Consensus        15 pf~~ivGq~~~k~al~~~~~----------------~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~   78 (350)
T CHL00081         15 PFTAIVGQEEMKLALILNVI----------------DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS   78 (350)
T ss_pred             CHHHHhChHHHHHHHHHhcc----------------CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence            36789999999988775311                2345689999999999999999999999765554444443    


Q ss_pred             -----------------------------EeecccccccccCCc--hhH--------HHHHHHHccCcEEEEcCcccccc
Q 013316          243 -----------------------------EVQRTDLVGEFVGHT--GPK--------TRRRIKEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       243 -----------------------------~~~~~~l~~~~~g~~--~~~--------~~~~~~~a~~~il~lDEid~l~~  283 (445)
                                                   .+....-...++|.-  ++.        ....+.+|.+|+||||||+.+.+
T Consensus        79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~  158 (350)
T CHL00081         79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD  158 (350)
T ss_pred             ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence                                         111111222233320  000        12245677889999999988887


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCC---------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHH
Q 013316          284 MQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEE  347 (445)
Q Consensus       284 ~~~~~~~~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~  347 (445)
                                 ..|+.|+..|+++               ++++|++.++..- .   ..++|.+||...+.+..|+ .++
T Consensus       159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg-~---l~~~LldRf~l~i~l~~~~~~~~  223 (350)
T CHL00081        159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG-E---LRPQLLDRFGMHAEIRTVKDPEL  223 (350)
T ss_pred             -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC-C---CCHHHHHHhCceeecCCCCChHH
Confidence                       7788888888653               2344554443321 2   3788999999999999998 699


Q ss_pred             HHHHHHHHH
Q 013316          348 LAKILHIKM  356 (445)
Q Consensus       348 ~~~il~~~l  356 (445)
                      +.+|++...
T Consensus       224 e~~il~~~~  232 (350)
T CHL00081        224 RVKIVEQRT  232 (350)
T ss_pred             HHHHHHhhh
Confidence            999998754

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.58  E-value=6.5e-14  Score=143.07  Aligned_cols=185  Identities=21%  Similarity=0.278  Sum_probs=126.3

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  237 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------  237 (445)
                      ..|++++|++.++..|.+++..-               ....++||+||+|||||++|+++|+.+.+.....        
T Consensus        13 ~~f~~liGq~~i~~~L~~~l~~~---------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~   77 (620)
T PRK14948         13 QRFDELVGQEAIATTLKNALISN---------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK   77 (620)
T ss_pred             CcHhhccChHHHHHHHHHHHHcC---------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence            46788999999999988865421               2346899999999999999999999997632110        


Q ss_pred             -----------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHH
Q 013316          238 -----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE  299 (445)
Q Consensus       238 -----------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~  299 (445)
                                 ...+++++..      .+..-..++++++.+       ...|+||||+|.+..           ++++.
T Consensus        78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~na  140 (620)
T PRK14948         78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNA  140 (620)
T ss_pred             cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHH
Confidence                       0012222211      111334566666554       347999999999875           67899


Q ss_pred             HHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316          300 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  377 (445)
Q Consensus       300 ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  377 (445)
                      |++.|++  ..+++|++++...  .+   -|.+++|+ ..+.|+.++.+++...+...+.+..           ..++.+
T Consensus       141 LLK~LEePp~~tvfIL~t~~~~--~l---lpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~keg-----------i~is~~  203 (620)
T PRK14948        141 LLKTLEEPPPRVVFVLATTDPQ--RV---LPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKES-----------IEIEPE  203 (620)
T ss_pred             HHHHHhcCCcCeEEEEEeCChh--hh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhC-----------CCCCHH
Confidence            9999987  5677777765422  22   57899998 8899999999999988887776531           245556


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhHHHHHH
Q 013316          378 AIAALIEKETTEKQRREMNGGLVDPMLVN  406 (445)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~  406 (445)
                      ++. .+...++      |+.|.+.+++++
T Consensus       204 al~-~La~~s~------G~lr~A~~lLek  225 (620)
T PRK14948        204 ALT-LVAQRSQ------GGLRDAESLLDQ  225 (620)
T ss_pred             HHH-HHHHHcC------CCHHHHHHHHHH
Confidence            655 5555654      444455555554

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.58  E-value=3.9e-14  Score=139.53  Aligned_cols=173  Identities=18%  Similarity=0.174  Sum_probs=111.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH--ccCcEEEEcCcccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIP  283 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~--a~~~il~lDEid~l~~  283 (445)
                      ..+++||||||+|||++++++++.+...+    ..++.+++..+...+...-.......|..  ....+|+||||+.+.+
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~----~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~  216 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHALRESG----GKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG  216 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcC----CCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence            46799999999999999999999987543    36777877765443321100000112222  2346999999999875


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc-hhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316          284 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       284 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~-~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                      +..     ...+....+-...+.++.+++.++.. ..+..   .++.|++||.  ..+.+++|+.+++..|++..+... 
T Consensus       217 k~~-----~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~---l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~-  287 (445)
T PRK12422        217 KGA-----TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA---MEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL-  287 (445)
T ss_pred             Chh-----hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh---hHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc-
Confidence            321     01112211222233455555555432 23322   3789999995  788999999999999999988763 


Q ss_pred             ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                                ...++++++..++...       .+|.|+|.+.+++..
T Consensus       288 ----------~~~l~~evl~~la~~~-------~~dir~L~g~l~~l~  318 (445)
T PRK12422        288 ----------SIRIEETALDFLIEAL-------SSNVKSLLHALTLLA  318 (445)
T ss_pred             ----------CCCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHH
Confidence                      1345667777565543       578888888888874

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.58  E-value=6.2e-15  Score=125.42  Aligned_cols=99  Identities=21%  Similarity=0.225  Sum_probs=86.4

Q ss_pred             CCCCchHhHHHHHcCCHH---HHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316           10 RSAKPATIHGCAQSGDLL---AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE   86 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~---~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~   86 (445)
                      ...|.||||+||..|+.+   .++.|+ ..+.++|.++...|+||||+|+..++.+++++|+..   .|++++.+|..|.
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll-~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~---~g~d~n~~~~~g~  127 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLM-EWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQ---PGVNMEILNYAFK  127 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHH-HcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhC---CCCCCccccCCCC
Confidence            347999999999999875   355444 578999998743699999999999999999999974   3789999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCc
Q 013316           87 TPLHMAAKNGCNEAAKLLLAHGAFIE  112 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~~ga~~~  112 (445)
                      ||||+|+..|+.+++++|+.+|++++
T Consensus       128 tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        128 TPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999865

>PHA02741 hypothetical protein; Provisional

Probab=99.57  E-value=5e-15  Score=127.89  Aligned_cols=117  Identities=24%  Similarity=0.230  Sum_probs=96.8

Q ss_pred             CCCCCCCCChHHHHHHhCCcHHHHHHhhcCC--CCCCcccccccCCCCcHHHHHHHcCC----HHHHHHHHhcCCCCccc
Q 013316           41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWP--GNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAK  114 (445)
Q Consensus        41 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~--~~~g~~v~~~d~~g~tpLh~A~~~g~----~~~~~~Ll~~ga~~~~~  114 (445)
                      +.++. .|.||||+|+..|+.+++++|+...  ...|++++.+|..|.||||+|+..|+    .+++++|+..|++++.+
T Consensus        15 ~~~~~-~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         15 AEKNS-EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hcccc-CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            34554 6999999999999999999885421  11367899999999999999999998    58899999999999999


Q ss_pred             cc-CCCChhhhhhcCCCChHHHHHHHh-hhhhHHhhhhhhhhhhhHH
Q 013316          115 AN-EGKTPLDHLSNGPGSAKLRELLLW-HSEEQRKRRALEACSETKA  159 (445)
Q Consensus       115 ~~-~g~tpl~~~a~~~~~~~i~~~ll~-~~~~~~~~~~~~~~~~~~a  159 (445)
                      +. +|+||| |+|+..++.+++++|+. .+.+....+..+.++...+
T Consensus        94 ~~~~g~TpL-h~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A  139 (169)
T PHA02741         94 EMLEGDTAL-HLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELA  139 (169)
T ss_pred             CcCCCCCHH-HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHH
Confidence            85 999999 88888899999999997 5777776666665665543

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.57  E-value=1.4e-13  Score=140.61  Aligned_cols=187  Identities=16%  Similarity=0.252  Sum_probs=128.0

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------  236 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---------  236 (445)
                      ..|++++|++.+++.|...+..               ...+..+||+||+|+|||++|+.+|+.+.+....         
T Consensus        14 ~~f~~viGq~~~~~~L~~~i~~---------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C   78 (614)
T PRK14971         14 STFESVVGQEALTTTLKNAIAT---------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC   78 (614)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence            3578899999999988886542               1234458999999999999999999998643210         


Q ss_pred             ---------CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHH
Q 013316          237 ---------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI  300 (445)
Q Consensus       237 ---------~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~l  300 (445)
                               ....+..+++++-      .+...++.+++++       ...|++|||+|.+..           ..++.|
T Consensus        79 ~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naL  141 (614)
T PRK14971         79 ESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAF  141 (614)
T ss_pred             hHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHH
Confidence                     0112333333211      1234456666443       347999999999975           678899


Q ss_pred             HhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316          301 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  378 (445)
Q Consensus       301 l~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  378 (445)
                      ++.|++  ...++|++++...  .   +-+.+++|+ ..++|++++.+++...+...+.+..           ..+++++
T Consensus       142 LK~LEepp~~tifIL~tt~~~--k---Il~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg-----------i~i~~~a  204 (614)
T PRK14971        142 LKTLEEPPSYAIFILATTEKH--K---ILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG-----------ITAEPEA  204 (614)
T ss_pred             HHHHhCCCCCeEEEEEeCCch--h---chHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999987  4566777665432  2   257899998 8899999999999999998887642           2345566


Q ss_pred             HHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          379 IAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       379 l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      +. .+...+      .++.|.+.+.+++..
T Consensus       205 l~-~La~~s------~gdlr~al~~Lekl~  227 (614)
T PRK14971        205 LN-VIAQKA------DGGMRDALSIFDQVV  227 (614)
T ss_pred             HH-HHHHHc------CCCHHHHHHHHHHHH
Confidence            65 444555      355566666666653

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.56  E-value=4.3e-14  Score=145.94  Aligned_cols=159  Identities=22%  Similarity=0.224  Sum_probs=111.7

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC------------
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI------------  235 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~------------  235 (445)
                      |..|+|++.++..+.-..  +              .....+|||.||||||||++||+|++.+.....            
T Consensus         3 f~~ivGq~~~~~al~~~a--v--------------~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~   66 (633)
T TIGR02442         3 FTAIVGQEDLKLALLLNA--V--------------DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDD   66 (633)
T ss_pred             cchhcChHHHHHHHHHHh--h--------------CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCC
Confidence            457999999887665321  1              123457999999999999999999998731000            


Q ss_pred             ----------------CCCCCeEEeecccccccccCCch--h--------HHHHHHHHccCcEEEEcCccccccCCCCCC
Q 013316          236 ----------------LPTDRVTEVQRTDLVGEFVGHTG--P--------KTRRRIKEAEGGILFVDEAYRLIPMQKADD  289 (445)
Q Consensus       236 ----------------~~~~~~~~~~~~~l~~~~~g~~~--~--------~~~~~~~~a~~~il~lDEid~l~~~~~~~~  289 (445)
                                      ....+|+.+.++.....++|...  .        .....+..|.+||||||||+.+.+      
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------  140 (633)
T TIGR02442        67 PEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------  140 (633)
T ss_pred             ccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------
Confidence                            11347888877766666666411  0        113356677889999999988887      


Q ss_pred             chhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHHHHHHH
Q 013316          290 KDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH  353 (445)
Q Consensus       290 ~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~  353 (445)
                           ..++.|+..|+.+.               +.+|++.++..-    ...++|++||+..|.++.+. .+++.+++.
T Consensus       141 -----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg----~l~~~L~dR~~l~i~v~~~~~~~~~~~il~  211 (633)
T TIGR02442       141 -----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAAPRDPEERVEIIR  211 (633)
T ss_pred             -----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC----CCCHHHHhhcceEEEccCCCchHHHHHHHH
Confidence                 78899999998652               566666554321    13678999999889888876 577788887


Q ss_pred             HHHh
Q 013316          354 IKMN  357 (445)
Q Consensus       354 ~~l~  357 (445)
                      ..+.
T Consensus       212 ~~~~  215 (633)
T TIGR02442       212 RRLA  215 (633)
T ss_pred             HHHh
Confidence            6443

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4.9e-14  Score=133.26  Aligned_cols=172  Identities=14%  Similarity=0.207  Sum_probs=121.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|+.++-..+.|++|.+=+.   -....++.+...+..=..+-|||||||||||++.-|+|..++.       .+..++.
T Consensus       199 tF~TlaMd~~~K~~I~~Dl~---~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------dIydLeL  268 (457)
T KOG0743|consen  199 TFETLAMDPDLKERIIDDLD---DFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------DIYDLEL  268 (457)
T ss_pred             CccccccChhHHHHHHHHHH---HHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-------ceEEeee
Confidence            45556666666766655222   2223444455556656679999999999999999999999876       5665655


Q ss_pred             ccccccccCCchhHHHHHHHHcc-CcEEEEcCccccccCCC--CC----Cc-hhHHHHHHHHHhhccC------CcEEEE
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQK--AD----DK-DYGIEALEEIMSVMDG------GKVVVI  312 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~-~~il~lDEid~l~~~~~--~~----~~-~~~~~~~~~ll~~~~~------~~~~~i  312 (445)
                      ++..      ....+++++..+. .+||+|++||.-...+.  ..    .. ....-.++-||.++|+      +..++|
T Consensus       269 t~v~------~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv  342 (457)
T KOG0743|consen  269 TEVK------LDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV  342 (457)
T ss_pred             cccc------CcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence            5442      2334888887775 49999999999865222  11    11 1223456778999886      345666


Q ss_pred             EecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          313 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       313 ~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      ++|+..+-     .||+|.|  |+|.+|+++.=+.++...++..|+.-.
T Consensus       343 FTTNh~Ek-----LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~  386 (457)
T KOG0743|consen  343 FTTNHKEK-----LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE  386 (457)
T ss_pred             EecCChhh-----cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence            66554332     3999999  999999999999999999999999863

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=8.3e-15  Score=112.27  Aligned_cols=88  Identities=40%  Similarity=0.560  Sum_probs=78.7

Q ss_pred             HHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCC
Q 013316           52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGS  131 (445)
Q Consensus        52 Lh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~  131 (445)
                      ||+|+..|+++++++|++.    +.+++.    |.||||+|+..|+.+++++|++.|++++.+|.+|+||| +.|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll~~----~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK----GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTAL-HYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT----TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHH-HHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHC----cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHH-HHHHHcCC
Confidence            7999999999999999995    666665    88999999999999999999999999999999999999 77888999


Q ss_pred             hHHHHHHHhhhhhHHhh
Q 013316          132 AKLRELLLWHSEEQRKR  148 (445)
Q Consensus       132 ~~i~~~ll~~~~~~~~~  148 (445)
                      .+++++|++++.++..+
T Consensus        72 ~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   72 LEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHHHHTTT-TTSS
T ss_pred             HHHHHHHHHcCCCCCCc
Confidence            99999999998876544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PRK08727 hypothetical protein; Validated

Probab=99.56  E-value=5.2e-13  Score=121.18  Aligned_cols=186  Identities=14%  Similarity=0.095  Sum_probs=112.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPM  284 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~  284 (445)
                      ...++|+||+|||||.+++++++.+...+.    ....++..++.        ..+.+.++.. ..-+|+|||++.+...
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~----~~~y~~~~~~~--------~~~~~~~~~l~~~dlLiIDDi~~l~~~  108 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCAAAEQAGR----SSAYLPLQAAA--------GRLRDALEALEGRSLVALDGLESIAGQ  108 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEeHHHhh--------hhHHHHHHHHhcCCEEEEeCcccccCC
Confidence            346999999999999999999998876432    44445544332        1223344333 3369999999988753


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCccccccc--ccceeCCCCCHHHHHHHHHHHHhccccc
Q 013316          285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED  362 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~  362 (445)
                      ..      ....+-.++....+....+|++++..+.. +-..+|.|++||  ...+.|++|+.+++.+|++....+.   
T Consensus       109 ~~------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~-l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~---  178 (233)
T PRK08727        109 RE------DEVALFDFHNRARAAGITLLYTARQMPDG-LALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR---  178 (233)
T ss_pred             hH------HHHHHHHHHHHHHHcCCeEEEECCCChhh-hhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc---
Confidence            32      11222223322222233344444433222 222379999997  4678999999999999999876653   


Q ss_pred             ccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          363 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                            .  -.++.+++..+..+ +      .+..|.+.+++++.......   .       ...||.+.+++.++
T Consensus       179 ------~--l~l~~e~~~~La~~-~------~rd~r~~l~~L~~l~~~~~~---~-------~~~it~~~~~~~l~  229 (233)
T PRK08727        179 ------G--LALDEAAIDWLLTH-G------ERELAGLVALLDRLDRESLA---A-------KRRVTVPFLRRVLE  229 (233)
T ss_pred             ------C--CCCCHHHHHHHHHh-C------CCCHHHHHHHHHHHHHHHHH---h-------CCCCCHHHHHHHHh
Confidence                  1  24566777756544 4      34555666667765321111   0       12588888887765

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.56  E-value=6.2e-14  Score=138.26  Aligned_cols=175  Identities=15%  Similarity=0.193  Sum_probs=113.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCcccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL  281 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid~l  281 (445)
                      ..+++|+||||||||++++++++++....  ....++.+++.++...+...    ....+.+.+.  ...+|+|||+|.+
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l  211 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENN--PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFL  211 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhh
Confidence            45789999999999999999999986531  12367788887765544321    1122222332  2469999999998


Q ss_pred             ccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch-hHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhc
Q 013316          282 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE-PMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNN  358 (445)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~-~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~  358 (445)
                      ..+..     ...+....+-...+.++.++|.++... .+..   .++.+++||.  ..+.|++|+.+++..|++..+..
T Consensus       212 ~~~~~-----~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~---l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~  283 (405)
T TIGR00362       212 AGKER-----TQEEFFHTFNALHENGKQIVLTSDRPPKELPG---LEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE  283 (405)
T ss_pred             cCCHH-----HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh---hhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence            76321     011222222233344555555444322 2222   3789999996  47899999999999999998876


Q ss_pred             ccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          359 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      .           ...++++.+..+. ..+      .+|.|++..++.+....
T Consensus       284 ~-----------~~~l~~e~l~~ia-~~~------~~~~r~l~~~l~~l~~~  317 (405)
T TIGR00362       284 E-----------GLELPDEVLEFIA-KNI------RSNVRELEGALNRLLAY  317 (405)
T ss_pred             c-----------CCCCCHHHHHHHH-Hhc------CCCHHHHHHHHHHHHHH
Confidence            4           2245566766444 444      67888888888877543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.55  E-value=4.7e-14  Score=140.79  Aligned_cols=175  Identities=15%  Similarity=0.192  Sum_probs=114.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCc----hhHHHHHHHHccCcEEEEcCcccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT----GPKTRRRIKEAEGGILFVDEAYRL  281 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~----~~~~~~~~~~a~~~il~lDEid~l  281 (445)
                      ..+++|+||||||||++++++++.+....  ....++.+++.++...+....    ...+.+.+.  ...+|+|||+|.+
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l  223 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN--PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFL  223 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhh
Confidence            45799999999999999999999987531  122577888887765544321    112222222  3469999999998


Q ss_pred             ccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchh-HHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhc
Q 013316          282 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP-MKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNN  358 (445)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~-~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~  358 (445)
                      ..+..     ...+++..+-...+.++.++|.++.+.. +..   .++.|++||.  ..+.|++|+.+++..|++..+..
T Consensus       224 ~~~~~-----~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~---l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~  295 (450)
T PRK00149        224 AGKER-----TQEEFFHTFNALHEAGKQIVLTSDRPPKELPG---LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE  295 (450)
T ss_pred             cCCHH-----HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH---HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence            76321     1112222233334455555555544322 222   3788999995  57899999999999999998875


Q ss_pred             ccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          359 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      .           ...++++.+..+. ..+      .+|.|.+..++.+....
T Consensus       296 ~-----------~~~l~~e~l~~ia-~~~------~~~~R~l~~~l~~l~~~  329 (450)
T PRK00149        296 E-----------GIDLPDEVLEFIA-KNI------TSNVRELEGALNRLIAY  329 (450)
T ss_pred             c-----------CCCCCHHHHHHHH-cCc------CCCHHHHHHHHHHHHHH
Confidence            3           2245666766444 444      67888888888877543

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=9.2e-15  Score=139.30  Aligned_cols=154  Identities=24%  Similarity=0.346  Sum_probs=103.1

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH-------------
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM-------------  232 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~-------------  232 (445)
                      -.|.+++||+.+|+.+.-.                  +....++||+||||||||++|+.+...+.-             
T Consensus       176 ~D~~DV~GQ~~AKrAleiA------------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~  237 (490)
T COG0606         176 PDFKDVKGQEQAKRALEIA------------------AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIH  237 (490)
T ss_pred             cchhhhcCcHHHHHHHHHH------------------HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHh
Confidence            3688999999999888753                  235679999999999999999988875510             


Q ss_pred             --cC-------CCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316          233 --VG-------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV  303 (445)
Q Consensus       233 --~~-------~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~  303 (445)
                        .+       .....||..-+.+.-...++|....--..-+..|.+|||||||+           .++...+++.|.+.
T Consensus       238 s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDEl-----------pef~~~iLe~LR~P  306 (490)
T COG0606         238 SLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDEL-----------PEFKRSILEALREP  306 (490)
T ss_pred             hhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeecc-----------chhhHHHHHHHhCc
Confidence              00       12233444444443333344433322234567789999999999           67777999999999


Q ss_pred             ccCCcE---------------EEEEecCchhHH------------------HHHhhCcccccccccceeCCCCCHHHH
Q 013316          304 MDGGKV---------------VVIFAGYSEPMK------------------RVIASNEGFCRRVTKFFHFNDFNSEEL  348 (445)
Q Consensus       304 ~~~~~~---------------~~i~a~~~~~~~------------------~~~~~~~~l~~R~~~~i~~~~~~~~~~  348 (445)
                      |+++++               .+|+|+|+-+.-                  ....+..+|++|+|..+.++.++..|+
T Consensus       307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~  384 (490)
T COG0606         307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL  384 (490)
T ss_pred             cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence            998654               344444332221                  111223668999999999999875444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.55  E-value=9.2e-14  Score=113.14  Aligned_cols=121  Identities=39%  Similarity=0.584  Sum_probs=107.0

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..|.||||+|+..|+.+.++.++. .+.+.+..+. .|.+|+|+|+..++.+++++|+..    +.+++..+..|.||+|
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~----~~~~~~~~~~~~~~l~   78 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDN-DGRTPLHLAAKNGHLEIVKLLLEK----GADVNARDKDGNTPLH   78 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCCCHHH
Confidence            468999999999999999998875 4566567775 799999999999999999999995    6678888899999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL  138 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l  138 (445)
                      +|+..++.+++++|+..|.+++..+..|.||+ +.+...+..+++++|
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~L  125 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADVNARDKDGRTPL-HLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCcccCCCCCCHH-HHHHhcCCHHHHHHh
Confidence            99999999999999999999999999999999 666666778877766

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=7.5e-14  Score=137.40  Aligned_cols=210  Identities=19%  Similarity=0.136  Sum_probs=138.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYR  280 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~  280 (445)
                      -.+.+++|+||+|+|||.+|+++++++.....   ..+..++|+.+.+.-+-...+.+..+|.++   .++||+||+.|.
T Consensus       429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~---~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~  505 (952)
T KOG0735|consen  429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLI---AHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC  505 (952)
T ss_pred             cccccEEEeCCCCCCHhHHHHHHHHHhccccc---eEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence            35668999999999999999999999874322   257778999887654444445555667666   579999999999


Q ss_pred             cccCCCC--CCchhHHHHHHHHH-hhc----cC-CcEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHH
Q 013316          281 LIPMQKA--DDKDYGIEALEEIM-SVM----DG-GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAK  350 (445)
Q Consensus       281 l~~~~~~--~~~~~~~~~~~~ll-~~~----~~-~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~  350 (445)
                      |.+..+.  ++.+...+.+..++ +.+    .. ..+.+|+++...     .+.+|-|-+  +|+.++.+|.|+..+|.+
T Consensus       506 l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~-----qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~  580 (952)
T KOG0735|consen  506 LASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL-----QTLNPLLVSPLLFQIVIALPAPAVTRRKE  580 (952)
T ss_pred             hhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh-----hhcChhhcCccceEEEEecCCcchhHHHH
Confidence            9873322  22223233333333 222    22 445666664332     233665555  889999999999999999


Q ss_pred             HHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccH
Q 013316          351 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITL  430 (445)
Q Consensus       351 il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  430 (445)
                      |+.+.+++..           .++..+.+. +++..++|.     -..++.-+++||+..+-.-    . .......+|.
T Consensus       581 IL~~~~s~~~-----------~~~~~~dLd-~ls~~TEGy-----~~~DL~ifVeRai~~a~le----r-is~~~klltk  638 (952)
T KOG0735|consen  581 ILTTIFSKNL-----------SDITMDDLD-FLSVKTEGY-----LATDLVIFVERAIHEAFLE----R-ISNGPKLLTK  638 (952)
T ss_pred             HHHHHHHhhh-----------hhhhhHHHH-HHHHhcCCc-----cchhHHHHHHHHHHHHHHH----H-hccCcccchH
Confidence            9999998742           122333444 344444332     3678889999997654411    1 1112238999


Q ss_pred             HHHHHHHHHHHhc
Q 013316          431 EDLEAGLKLLLRL  443 (445)
Q Consensus       431 ~d~~~a~~~~~~~  443 (445)
                      ++|.++++.+.|.
T Consensus       639 e~f~ksL~~F~P~  651 (952)
T KOG0735|consen  639 ELFEKSLKDFVPL  651 (952)
T ss_pred             HHHHHHHHhcChH
Confidence            9999999988774

>PHA02792 ankyrin-like protein; Provisional

Probab=99.53  E-value=3.3e-14  Score=142.27  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=98.9

Q ss_pred             CCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCC--ChHHHHHHhCCcH---HHHHHhhcCCCCCCc
Q 013316            2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMA--QTPLHVSAGYNKA---EIVKSLLEWPGNDKV   76 (445)
Q Consensus         2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g--~tpLh~A~~~g~~---~iv~~Ll~~~~~~g~   76 (445)
                      ..|++.. +..+..++|.||..|+.++++.|+. +|++++..+. .|  .||||+|+.....   +++++|+.+    |+
T Consensus       329 d~Ga~~~-r~~~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~-~g~~~TpLh~A~~n~~~~v~~IlklLIs~----GA  401 (631)
T PHA02792        329 DEGATLY-RFKHINKYFQKFDNRDPKVVEYILK-NGNVVVEDDD-NIINIMPLFPTLSIHESDVLSILKLCKPY----ID  401 (631)
T ss_pred             HCCCccc-cCCcchHHHHHHHcCCHHHHHHHHH-cCCchhhhcC-CCCChhHHHHHHHhccHhHHHHHHHHHhc----CC
Confidence            3566654 2346778999999999999987775 6899999886 44  6999998877654   357888885    89


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhh
Q 013316           77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL  125 (445)
Q Consensus        77 ~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  125 (445)
                      ++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||++++
T Consensus       402 DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.53  E-value=2.1e-14  Score=136.76  Aligned_cols=121  Identities=30%  Similarity=0.428  Sum_probs=105.2

Q ss_pred             CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCC-----------------------------------------
Q 013316            1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPS-----------------------------------------   38 (445)
Q Consensus         1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~-----------------------------------------   38 (445)
                      +++|+++|..+ .+|||||.|+..|++.++++++.. |+                                         
T Consensus        93 ~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~  171 (527)
T KOG0505|consen   93 VENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARK  171 (527)
T ss_pred             HHhcCCccccccccCCcchhhcccccHHHHHHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhh
Confidence            36789999877 799999999999999999988763 22                                         


Q ss_pred             ------------------CcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHH
Q 013316           39 ------------------LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA  100 (445)
Q Consensus        39 ------------------~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~  100 (445)
                                        ..+.... .|.|.||+|+.+|..++..+|+..    |.+++.+|.+|+||||.|+..|..++
T Consensus       172 ~~e~~ml~D~~q~l~~G~~~d~~~~-rG~T~lHvAaa~Gy~e~~~lLl~a----g~~~~~~D~dgWtPlHAAA~Wg~~~~  246 (527)
T KOG0505|consen  172 AEEQTMLDDARQWLNAGAELDARHA-RGATALHVAAANGYTEVAALLLQA----GYSVNIKDYDGWTPLHAAAHWGQEDA  246 (527)
T ss_pred             hhHHHHHHHHHHHHhcccccccccc-ccchHHHHHHhhhHHHHHHHHHHh----ccCcccccccCCCcccHHHHhhhHhH
Confidence                              1122223 588999999999999999999995    88999999999999999999999999


Q ss_pred             HHHHHhcCCCCcccccCCCChhhhhhc
Q 013316          101 AKLLLAHGAFIEAKANEGKTPLDHLSN  127 (445)
Q Consensus       101 ~~~Ll~~ga~~~~~~~~g~tpl~~~a~  127 (445)
                      +++|+.+|++++....+|.||++.+..
T Consensus       247 ~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  247 CELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHHhhcccchhhhcCCCCccchhh
Confidence            999999999999999999999966544

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.52  E-value=9.5e-14  Score=141.90  Aligned_cols=147  Identities=14%  Similarity=0.224  Sum_probs=98.6

Q ss_pred             HHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------------cEEEEEecCchhH
Q 013316          264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM  320 (445)
Q Consensus       264 ~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~~~  320 (445)
                      .+.+|.+|+|||||++.+.+           ..+..|++.|+++                       ++.+|++++.+..
T Consensus       212 ~L~~AngGtL~Ldei~~L~~-----------~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l  280 (608)
T TIGR00764       212 AIHRAHKGVLYIDEIKTMPL-----------EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL  280 (608)
T ss_pred             ceEECCCCEEEEEChHhCCH-----------HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH
Confidence            56677889999999988876           6777888877542                       3567888776544


Q ss_pred             HHHHhhCcccccccc---cceeCCC---CCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH---hh
Q 013316          321 KRVIASNEGFCRRVT---KFFHFND---FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQ  391 (445)
Q Consensus       321 ~~~~~~~~~l~~R~~---~~i~~~~---~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~  391 (445)
                      ..   .+|.|++||+   ..+.|+.   .+.+.+.++++. +.+...+.     ...+.++.+++..++.+++..   .-
T Consensus       281 ~~---l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~-i~~~~~r~-----G~l~~~s~~Av~~Li~~~~R~ag~r~  351 (608)
T TIGR00764       281 EG---MHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQF-VAQEVKKD-----GRIPHFTRDAVEEIVREAQRRAGRKD  351 (608)
T ss_pred             hh---cCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHH-HHHHHHHh-----CCCCcCCHHHHHHHHHHHHHHHhccc
Confidence            33   4999999998   5666654   245666666554 33332221     113478889999888665532   12


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      +.+.+.|++.+++..|...+.         .++...|+.+||.+|++.
T Consensus       352 ~lsl~~R~L~~llR~A~~iA~---------~~~~~~I~~ehV~~Ai~~  390 (608)
T TIGR00764       352 HLTLRLRELGGLVRAAGDIAK---------SSGKVYVTAEHVLKAKKL  390 (608)
T ss_pred             ccCCCHHHHHHHHHHHHHHHH---------hcCCceecHHHHHHHHHH
Confidence            346788999999998832211         112347999999998874

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.51  E-value=4.5e-13  Score=126.81  Aligned_cols=158  Identities=20%  Similarity=0.273  Sum_probs=102.6

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC---------
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT---------  238 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~---------  238 (445)
                      |..|+|++.+|..+.-.+  +              .....+++|.|+||||||+++|+++..+........         
T Consensus         3 f~~ivgq~~~~~al~~~~--~--------------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~   66 (337)
T TIGR02030         3 FTAIVGQDEMKLALLLNV--I--------------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSD   66 (337)
T ss_pred             ccccccHHHHHHHHHHHh--c--------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCC
Confidence            456999999987765321  1              223568999999999999999999988732110000         


Q ss_pred             ------------------------CCeEEeecccccccccCCch--hH--------HHHHHHHccCcEEEEcCccccccC
Q 013316          239 ------------------------DRVTEVQRTDLVGEFVGHTG--PK--------TRRRIKEAEGGILFVDEAYRLIPM  284 (445)
Q Consensus       239 ------------------------~~~~~~~~~~l~~~~~g~~~--~~--------~~~~~~~a~~~il~lDEid~l~~~  284 (445)
                                              .+|+.+........++|...  ..        ....+.+|.+++||||||+.+.+ 
T Consensus        67 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~-  145 (337)
T TIGR02030        67 PEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED-  145 (337)
T ss_pred             ccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH-
Confidence                                    11122111111223444311  11        12356678889999999998876 


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeCCCCCH-HHH
Q 013316          285 QKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EEL  348 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~  348 (445)
                                ..|+.|+..|+++.               +++|++.++.. ..   ..++|++||...+.++.|+. +++
T Consensus       146 ----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e-g~---l~~~LldRf~l~i~l~~p~~~eer  211 (337)
T TIGR02030       146 ----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE-GE---LRPQLLDRFGLHAEIRTVRDVELR  211 (337)
T ss_pred             ----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc-CC---CCHHHHhhcceEEECCCCCCHHHH
Confidence                      78888998887542               34555544332 12   36889999999999999986 888


Q ss_pred             HHHHHHHH
Q 013316          349 AKILHIKM  356 (445)
Q Consensus       349 ~~il~~~l  356 (445)
                      .+|++...
T Consensus       212 ~eIL~~~~  219 (337)
T TIGR02030       212 VEIVERRT  219 (337)
T ss_pred             HHHHHhhh
Confidence            89998744

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK05642 DNA replication initiation factor; Validated

Probab=99.49  E-value=1.4e-12  Score=118.30  Aligned_cols=167  Identities=11%  Similarity=0.167  Sum_probs=108.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ  285 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~  285 (445)
                      ..+++|+||+|||||.+++++++++...+    ..++.++..++...     ...+.+.+..+  -+|+||+++.+..+.
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~----~~v~y~~~~~~~~~-----~~~~~~~~~~~--d~LiiDDi~~~~~~~  113 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG----EPAVYLPLAELLDR-----GPELLDNLEQY--ELVCLDDLDVIAGKA  113 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEeeHHHHHhh-----hHHHHHhhhhC--CEEEEechhhhcCCh
Confidence            46789999999999999999998876432    25667777666432     11222333322  589999999886532


Q ss_pred             CCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhcccccc
Q 013316          286 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTEDS  363 (445)
Q Consensus       286 ~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~  363 (445)
                      +     ........+-...+.++.+++.+++......  ...|.|++||.  ..+.+.+|+.+++..+++......    
T Consensus       114 ~-----~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~--~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~----  182 (234)
T PRK05642        114 D-----WEEALFHLFNRLRDSGRRLLLAASKSPRELP--IKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR----  182 (234)
T ss_pred             H-----HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcC--ccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----
Confidence            1     1111222222233456777777765443221  23699999994  677889999999999999665442    


Q ss_pred             cccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          364 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                           .  -.++++++.++..+ +      .+++|.+.+++++..
T Consensus       183 -----~--~~l~~ev~~~L~~~-~------~~d~r~l~~~l~~l~  213 (234)
T PRK05642        183 -----G--LHLTDEVGHFILTR-G------TRSMSALFDLLERLD  213 (234)
T ss_pred             -----C--CCCCHHHHHHHHHh-c------CCCHHHHHHHHHHHH
Confidence                 1  24556777755543 3      677888888888774

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.48  E-value=2.5e-14  Score=129.69  Aligned_cols=116  Identities=22%  Similarity=0.248  Sum_probs=97.2

Q ss_pred             CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH-----cCCHHHHHHHHhcCCCCc
Q 013316           38 SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK-----NGCNEAAKLLLAHGAFIE  112 (445)
Q Consensus        38 ~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~-----~g~~~~~~~Ll~~ga~~~  112 (445)
                      +.||..|. +|+|+||||+.++++++|+.||+.   .-++|+.++.-|.||+++++.     ..+..+|..|... .++|
T Consensus       259 yvVNlaDs-NGNTALHYsVSHaNF~VV~~LLDS---gvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVN  333 (452)
T KOG0514|consen  259 YVVNLADS-NGNTALHYAVSHANFDVVSILLDS---GVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVN  333 (452)
T ss_pred             HHhhhhcC-CCCeeeeeeecccchHHHHHHhcc---CcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcc
Confidence            46788887 899999999999999999999986   357899999999999999984     3456778888776 4788


Q ss_pred             ccc-cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          113 AKA-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       113 ~~~-~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      ++- ..|+|+| .+|...|+.++++.|+..+++.+..+..+.+..-.+
T Consensus       334 aKAsQ~gQTAL-MLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA  380 (452)
T KOG0514|consen  334 AKASQHGQTAL-MLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCA  380 (452)
T ss_pred             hhhhhhcchhh-hhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhh
Confidence            875 5799999 999999999999999999999888766555554333

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.48  E-value=7e-13  Score=131.11  Aligned_cols=175  Identities=15%  Similarity=0.217  Sum_probs=110.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCcccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL  281 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid~l  281 (445)
                      ..+++||||||||||.+++++++.+....  ....++.+++.++...+...    ....+...+. ....+|+|||++.+
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~--~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l  206 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR-KKVDVLLIDDVQFL  206 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH-hcCCEEEEechhhh
Confidence            45799999999999999999999876422  12257777877765544321    1111222221 13579999999988


Q ss_pred             ccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc-hhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhc
Q 013316          282 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNN  358 (445)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~-~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~  358 (445)
                      ..+.+     ...+....+-...+.+..+++.++.. ..+..   ..+.+++||.  ..+.+++|+.+++.+|++..+..
T Consensus       207 ~~~~~-----~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~---l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~  278 (440)
T PRK14088        207 IGKTG-----VQTELFHTFNELHDSGKQIVICSDREPQKLSE---FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI  278 (440)
T ss_pred             cCcHH-----HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHH---HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence            65321     11123333333334455555544322 22223   3678999994  57799999999999999988775


Q ss_pred             ccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          359 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ..           ..++++.+. .++...      .+|.|++..++.+...
T Consensus       279 ~~-----------~~l~~ev~~-~Ia~~~------~~~~R~L~g~l~~l~~  311 (440)
T PRK14088        279 EH-----------GELPEEVLN-FVAENV------DDNLRRLRGAIIKLLV  311 (440)
T ss_pred             cC-----------CCCCHHHHH-HHHhcc------ccCHHHHHHHHHHHHH
Confidence            31           235556655 444444      6788888888887744

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=5.6e-13  Score=132.55  Aligned_cols=142  Identities=22%  Similarity=0.246  Sum_probs=111.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLI  282 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~  282 (445)
                      ...+|++|+||||||++++++|.+++.       ++++++|.++.++-.++++.++...|..|   .++||||-.+|.+.
T Consensus       431 ~~~vLLhG~~g~GK~t~V~~vas~lg~-------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~  503 (953)
T KOG0736|consen  431 NPSVLLHGPPGSGKTTVVRAVASELGL-------HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG  503 (953)
T ss_pred             ceEEEEeCCCCCChHHHHHHHHHHhCC-------ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee
Confidence            447999999999999999999999998       99999999999999999999999999877   46999999999998


Q ss_pred             cCCCCCCchhHHHHHHHHHh---hc-cCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhc
Q 013316          283 PMQKADDKDYGIEALEEIMS---VM-DGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN  358 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~---~~-~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~  358 (445)
                      -.+.++..--...+++.++.   .- ....+++|+++++..-     ..+.+++-|-..|.+|.|+.+||.+|++-++..
T Consensus       504 id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~-----lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~  578 (953)
T KOG0736|consen  504 IDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED-----LPADIQSLFLHEIEVPALSEEQRLEILQWYLNH  578 (953)
T ss_pred             ecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc-----CCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence            54443222222244444444   11 1256788887655332     257778888899999999999999999999887


Q ss_pred             c
Q 013316          359 Q  359 (445)
Q Consensus       359 ~  359 (445)
                      .
T Consensus       579 ~  579 (953)
T KOG0736|consen  579 L  579 (953)
T ss_pred             c
Confidence            5

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.47  E-value=1.5e-12  Score=130.34  Aligned_cols=174  Identities=19%  Similarity=0.259  Sum_probs=112.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCc----hhHHHHHHHHccCcEEEEcCccccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT----GPKTRRRIKEAEGGILFVDEAYRLI  282 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~----~~~~~~~~~~a~~~il~lDEid~l~  282 (445)
                      ..++|||++|||||.|+.+|++.+....  ....++.+++.++...+....    ...+.+.+.  ...+|+||||+.+.
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~--~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~--~~DLLlIDDIq~l~  390 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLY--PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR--EMDILLVDDIQFLE  390 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh--cCCEEEEehhcccc
Confidence            4599999999999999999999886421  122677888877766554321    112222222  34799999999997


Q ss_pred             cCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316          283 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                      .+..     ...++++.+-...+.++-+||.+... +.. +...++.|++||.  ..+.+..|+.+.+.+||+..+.+. 
T Consensus       391 gke~-----tqeeLF~l~N~l~e~gk~IIITSd~~-P~e-L~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r-  462 (617)
T PRK14086        391 DKES-----TQEEFFHTFNTLHNANKQIVLSSDRP-PKQ-LVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE-  462 (617)
T ss_pred             CCHH-----HHHHHHHHHHHHHhcCCCEEEecCCC-hHh-hhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc-
Confidence            6331     11122322223334455455544332 221 2224789999995  667999999999999999987764 


Q ss_pred             ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                                ...++.+.+..+..+.       ..|.|+|..++.+...
T Consensus       463 ----------~l~l~~eVi~yLa~r~-------~rnvR~LegaL~rL~a  494 (617)
T PRK14086        463 ----------QLNAPPEVLEFIASRI-------SRNIRELEGALIRVTA  494 (617)
T ss_pred             ----------CCCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHH
Confidence                      1245666777555443       5688889888887754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.47  E-value=1.3e-13  Score=146.62  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=107.3

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC-------------CCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP-------------VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE   77 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~   77 (445)
                      ..|.||||+||..|+.++++.|+. .|++++.++.             ..|.||||+|+..|+.+++++|+++    |+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~-~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~----gad  200 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLE-RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED----PAD  200 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC----Ccc
Confidence            369999999999999999998875 6888886531             2489999999999999999999995    889


Q ss_pred             cccccCCCCcHHHHHHHcC---------CHHHHHHHHhcCCCC-------cccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           78 LEAQNMYGETPLHMAAKNG---------CNEAAKLLLAHGAFI-------EAKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        78 v~~~d~~g~tpLh~A~~~g---------~~~~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                      ++.+|..|+||||+|+..+         ...+.++++..++..       +..|.+|.||| +.|+..++.+++++++..
T Consensus       201 in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL-~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPL-KLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCch-hhhhhcCCccHHHHHHHH
Confidence            9999999999999999987         234666777766654       66799999999 788889999999999985


Q ss_pred             hh
Q 013316          142 SE  143 (445)
Q Consensus       142 ~~  143 (445)
                      ..
T Consensus       280 ~~  281 (743)
T TIGR00870       280 KY  281 (743)
T ss_pred             HH
Confidence            43

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PRK06620 hypothetical protein; Validated

Probab=99.47  E-value=5e-13  Score=119.21  Aligned_cols=167  Identities=13%  Similarity=0.096  Sum_probs=106.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK  286 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~  286 (445)
                      ..++||||||||||++++++++....       .++.  ....           ..+.+  ....+|+|||||.+..   
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-----------~~~~~--~~~d~lliDdi~~~~~---   99 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-----------NEEIL--EKYNAFIIEDIENWQE---   99 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-----------chhHH--hcCCEEEEeccccchH---
Confidence            67999999999999999998876432       2211  1000           01111  1346999999985411   


Q ss_pred             CCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccccccc
Q 013316          287 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTEDSL  364 (445)
Q Consensus       287 ~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~  364 (445)
                             ......+-...+.++.++|++++.++..   .. |.|++|+.  .++.+.+|+.+++..+++..+...     
T Consensus       100 -------~~lf~l~N~~~e~g~~ilits~~~p~~l---~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-----  163 (214)
T PRK06620        100 -------PALLHIFNIINEKQKYLLLTSSDKSRNF---TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-----  163 (214)
T ss_pred             -------HHHHHHHHHHHhcCCEEEEEcCCCcccc---ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-----
Confidence                   1223223333466777777777666532   34 88999994  378999999999999998877652     


Q ss_pred             ccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          365 LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                          .  -.++++++..++.+ +      .++.|.+.+++++..+. ...         ....||.+.+++++
T Consensus       164 ----~--l~l~~ev~~~L~~~-~------~~d~r~l~~~l~~l~~~-~~~---------~~~~it~~~~~~~l  213 (214)
T PRK06620        164 ----S--VTISRQIIDFLLVN-L------PREYSKIIEILENINYF-ALI---------SKRKITISLVKEVL  213 (214)
T ss_pred             ----C--CCCCHHHHHHHHHH-c------cCCHHHHHHHHHHHHHH-HHH---------cCCCCCHHHHHHHh
Confidence                1  24566677755544 3      67788888888875321 110         11247777777664

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.47  E-value=9.3e-14  Score=119.15  Aligned_cols=111  Identities=17%  Similarity=0.342  Sum_probs=77.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccCCchhHHHHHH-------HHccCcEEEEc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI-------KEAEGGILFVD  276 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-------~~a~~~il~lD  276 (445)
                      +..+++|+||+|||||.+|+++++.+. .    ...+++.++++.+....-  ....+.+.+       ...+++|||||
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~----~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllD   75 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVG----SERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLD   75 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-S----SCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccC----CccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhH
Confidence            345799999999999999999999998 3    234899999998765100  111112222       23345899999


Q ss_pred             CccccccCCCCCCchhHHHHHHHHHhhccCC-------------cEEEEEecCchhHH
Q 013316          277 EAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMK  321 (445)
Q Consensus       277 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~~~~i~a~~~~~~~  321 (445)
                      |||+++++.+.........+++.||+.++++             ++++|++++-....
T Consensus        76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~  133 (171)
T PF07724_consen   76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE  133 (171)
T ss_dssp             TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred             HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence            9999999743333445568899999999753             45788877654433

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.47  E-value=2.3e-12  Score=127.53  Aligned_cols=178  Identities=11%  Similarity=0.120  Sum_probs=112.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCch---hHHHHHHHHc-cCcEEEEcCcccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG---PKTRRRIKEA-EGGILFVDEAYRL  281 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~---~~~~~~~~~a-~~~il~lDEid~l  281 (445)
                      ..+++|||++|||||.+++++++.+....  ....++.+++.++...+...-.   ..+.+..+.. ..-+|+|||++.+
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~--~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l  218 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNYIESNF--SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL  218 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence            45799999999999999999999876421  1226677888777655432211   1222222222 3369999999988


Q ss_pred             ccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhcc
Q 013316          282 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      ..+..     ........+-...+.++.+++.+......  +...++.|++||.  ..+.+.+|+.+++.+|+++.++..
T Consensus       219 ~~k~~-----~~e~lf~l~N~~~~~~k~iIltsd~~P~~--l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~  291 (450)
T PRK14087        219 SYKEK-----TNEIFFTIFNNFIENDKQLFFSSDKSPEL--LNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ  291 (450)
T ss_pred             cCCHH-----HHHHHHHHHHHHHHcCCcEEEECCCCHHH--HhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence            75321     11122222222334455444444333222  2234789999994  677999999999999999988763


Q ss_pred             cccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          360 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      .         +...++++++..+ ...+      .+|.|.+.+++.++.
T Consensus       292 g---------l~~~l~~evl~~I-a~~~------~gd~R~L~gaL~~l~  324 (450)
T PRK14087        292 N---------IKQEVTEEAINFI-SNYY------SDDVRKIKGSVSRLN  324 (450)
T ss_pred             C---------CCCCCCHHHHHHH-HHcc------CCCHHHHHHHHHHHH
Confidence            1         1124677777644 4554      678888888888774

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=99.46  E-value=5.2e-14  Score=117.19  Aligned_cols=132  Identities=23%  Similarity=0.345  Sum_probs=89.7

Q ss_pred             hcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 013316          172 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG  251 (445)
Q Consensus       172 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~  251 (445)
                      +|.++.++++++.+..+              +....+|+|+|++||||+++|++||.....    ...+|+.++|..+. 
T Consensus         1 vG~S~~~~~l~~~l~~~--------------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~----~~~~~~~~~~~~~~-   61 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERL--------------AKSSSPVLITGEPGTGKSLLARALHRYSGR----ANGPFIVIDCASLP-   61 (138)
T ss_dssp             --SCHHHHHHHHHHHHH--------------HCSSS-EEEECCTTSSHHHHHHCCHHTTTT----CCS-CCCCCHHCTC-
T ss_pred             CCCCHHHHHHHHHHHHH--------------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCc----cCCCeEEechhhCc-
Confidence            57888888888877655              456789999999999999999999997654    33477777776642 


Q ss_pred             cccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc---CCcEEEEEecCchhHHHH--Hhh
Q 013316          252 EFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---GGKVVVIFAGYSEPMKRV--IAS  326 (445)
Q Consensus       252 ~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~i~a~~~~~~~~~--~~~  326 (445)
                                .+.++.+.+++|||+|||.+.+           +.|..|+..++   ..++.+|++++.+....+  -..
T Consensus        62 ----------~~~l~~a~~gtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~  120 (138)
T PF14532_consen   62 ----------AELLEQAKGGTLYLKNIDRLSP-----------EAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRF  120 (138)
T ss_dssp             ----------HHHHHHCTTSEEEEECGCCS-H-----------HHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTH
T ss_pred             ----------HHHHHHcCCCEEEECChHHCCH-----------HHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccch
Confidence                      4577889999999999999987           66666666665   345667766654433211  122


Q ss_pred             Ccccccccc-cceeCCCC
Q 013316          327 NEGFCRRVT-KFFHFNDF  343 (445)
Q Consensus       327 ~~~l~~R~~-~~i~~~~~  343 (445)
                      ++.|..||. ..|.+|++
T Consensus       121 ~~~L~~~l~~~~i~lPpL  138 (138)
T PF14532_consen  121 SPDLYYRLSQLEIHLPPL  138 (138)
T ss_dssp             HHHHHHHCSTCEEEE---
T ss_pred             hHHHHHHhCCCEEeCCCC
Confidence            466777875 66677763

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=99.46  E-value=6.2e-13  Score=137.52  Aligned_cols=142  Identities=15%  Similarity=0.161  Sum_probs=93.4

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-chhH--HHHHHHHccCcEEEEcCccc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPK--TRRRIKEAEGGILFVDEAYR  280 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~--~~~~~~~a~~~il~lDEid~  280 (445)
                      ....||||.|+||||||.+|+++|+...+.......++..+.++.... +.+. ++..  -...+..|.+|+++|||++.
T Consensus       490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAdgGtL~IDEidk  568 (915)
T PTZ00111        490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLANGGVCCIDELDK  568 (915)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcCCCeEEecchhh
Confidence            345699999999999999999999977543323334566655554422 1110 1111  12256678899999999998


Q ss_pred             cccCCCCCCchhHHHHHHHHHhhccCC---------------cEEEEEecCchhHH--------HHHhhCcccccccccc
Q 013316          281 LIPMQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMK--------RVIASNEGFCRRVTKF  337 (445)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~~~--------~~~~~~~~l~~R~~~~  337 (445)
                      +.+           ..+..|+++|+.+               +..||+|+++..-.        .-+...|+|++|||..
T Consensus       569 ms~-----------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI  637 (915)
T PTZ00111        569 CHN-----------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI  637 (915)
T ss_pred             CCH-----------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence            876           6677888888653               35677777664211        1223358899999966


Q ss_pred             e-eCCCCCHHHHHHHHHHHHh
Q 013316          338 F-HFNDFNSEELAKILHIKMN  357 (445)
Q Consensus       338 i-~~~~~~~~~~~~il~~~l~  357 (445)
                      + .++.|+.+.=..|.++.++
T Consensus       638 f~l~D~~d~~~D~~lA~hI~~  658 (915)
T PTZ00111        638 YLVLDHIDQDTDQLISLSIAK  658 (915)
T ss_pred             EEecCCCChHHHHHHHHHHHH
Confidence            4 7777776665666666553

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.45  E-value=7e-14  Score=137.87  Aligned_cols=123  Identities=32%  Similarity=0.321  Sum_probs=111.5

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.|.||+||.+|+..+++.|+. +..-++..+. .|.+|||+|++.|+.+++++++..    +..+|..+..|.||||.
T Consensus        48 ~gfTalhha~Lng~~~is~llle-~ea~ldl~d~-kg~~plhlaaw~g~~e~vkmll~q----~d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLD-YEALLDLCDT-KGILPLHLAAWNGNLEIVKMLLLQ----TDILNAVNIENETPLHL  121 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhc-chhhhhhhhc-cCcceEEehhhcCcchHHHHHHhc----ccCCCcccccCcCccch
Confidence            69999999999999999986665 4555666665 699999999999999999999985    56789999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                      |+.+|+.+++.+|+.+|+++-.+|+.+.|++ -+|+..+..++++.|++.
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~l-dlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVL-DLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccCcccccHH-HHHHHhhhhHHHHHHhhh
Confidence            9999999999999999999999999999999 788999999999998876

>smart00350 MCM minichromosome maintenance proteins

Probab=99.45  E-value=7e-13  Score=133.80  Aligned_cols=242  Identities=14%  Similarity=0.158  Sum_probs=140.5

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE---eec
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE---VQR  246 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~---~~~  246 (445)
                      .|.|++.+|..+.-.+-.-.    .+............||||+|+||||||++||++|+.+.+.      .|+.   .++
T Consensus       204 ~i~G~~~~k~~l~l~l~gg~----~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~------~~~~~~~~~~  273 (509)
T smart00350      204 SIYGHEDIKKAILLLLFGGV----HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA------VYTTGKGSSA  273 (509)
T ss_pred             cccCcHHHHHHHHHHHhCCC----ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc------eEcCCCCCCc
Confidence            48899988766553221000    0000000112234589999999999999999999987541      1221   122


Q ss_pred             cccccc-----ccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------------
Q 013316          247 TDLVGE-----FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------------  307 (445)
Q Consensus       247 ~~l~~~-----~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------------  307 (445)
                      ..+...     ..|+. ..-...+..|.+|+++|||++.+.+           ..+..|+..|+.+              
T Consensus       274 ~~l~~~~~~~~~~g~~-~~~~G~l~~A~~Gil~iDEi~~l~~-----------~~q~~L~e~me~~~i~i~k~G~~~~l~  341 (509)
T smart00350      274 VGLTAAVTRDPETREF-TLEGGALVLADNGVCCIDEFDKMDD-----------SDRTAIHEAMEQQTISIAKAGITTTLN  341 (509)
T ss_pred             CCccccceEccCcceE-EecCccEEecCCCEEEEechhhCCH-----------HHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence            222111     11110 0001234567899999999988876           6677888888653              


Q ss_pred             -cEEEEEecCchhH--------HHHHhhCcccccccccc-eeCCCCCHHHHHHHHHHHHhccccc----cccc-------
Q 013316          308 -KVVVIFAGYSEPM--------KRVIASNEGFCRRVTKF-FHFNDFNSEELAKILHIKMNNQTED----SLLY-------  366 (445)
Q Consensus       308 -~~~~i~a~~~~~~--------~~~~~~~~~l~~R~~~~-i~~~~~~~~~~~~il~~~l~~~~~~----~~~~-------  366 (445)
                       +..+|+++++..-        ..-+...|++++|||.. +....|+.+...+|+++.++.....    ....       
T Consensus       342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~  421 (509)
T smart00350      342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE  421 (509)
T ss_pred             CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence             3466777665421        01124579999999965 4668888888899998876532211    0000       


Q ss_pred             --------ccc-cCCcccHHHHHHHHHHHHHHhh---------hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhc
Q 013316          367 --------GFK-LHSSCSMDAIAALIEKETTEKQ---------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI  428 (445)
Q Consensus       367 --------~~~-~~~~~~~~~l~~~~~~~~~~~~---------~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i  428 (445)
                              .-. +.|.+++++...+...+..-..         ..+...|.+..++.-+...+..+.         ...|
T Consensus       422 ~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~---------r~~V  492 (509)
T smart00350      422 FLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRL---------SDVV  492 (509)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcC---------CCcc
Confidence                    001 3456677776655544442111         113456777777777644443332         2379


Q ss_pred             cHHHHHHHHHHHHh
Q 013316          429 TLEDLEAGLKLLLR  442 (445)
Q Consensus       429 ~~~d~~~a~~~~~~  442 (445)
                      +.+|+..|+.-+..
T Consensus       493 ~~~Dv~~ai~l~~~  506 (509)
T smart00350      493 EEADVEEAIRLLRE  506 (509)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999987653

>PRK09087 hypothetical protein; Validated

Probab=99.44  E-value=3e-12  Score=115.24  Aligned_cols=178  Identities=13%  Similarity=0.094  Sum_probs=112.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ  285 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~  285 (445)
                      .+.++|+||+|+|||+++++++.....         ..++...+.           ...+......+|+|||++.+...+
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~---------~~i~~~~~~-----------~~~~~~~~~~~l~iDDi~~~~~~~  103 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDA---------LLIHPNEIG-----------SDAANAAAEGPVLIEDIDAGGFDE  103 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCC---------EEecHHHcc-----------hHHHHhhhcCeEEEECCCCCCCCH
Confidence            345999999999999999998875422         233332221           112223334689999999874211


Q ss_pred             CCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhcccccc
Q 013316          286 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTEDS  363 (445)
Q Consensus       286 ~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~  363 (445)
                              .+....+-...+.++.++|.+++....-..  ..|.|++||.  ..+.+.+|+.+++.++++..++..    
T Consensus       104 --------~~lf~l~n~~~~~g~~ilits~~~p~~~~~--~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~----  169 (226)
T PRK09087        104 --------TGLFHLINSVRQAGTSLLMTSRLWPSSWNV--KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR----  169 (226)
T ss_pred             --------HHHHHHHHHHHhCCCeEEEECCCChHHhcc--ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc----
Confidence                    133333334445577777777665543321  2688999995  788999999999999999988763    


Q ss_pred             cccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          364 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                             .-.++++++..++.+ +      .++.+.+..++.+..+.   ...       ....||...++++++.+.
T Consensus       170 -------~~~l~~ev~~~La~~-~------~r~~~~l~~~l~~L~~~---~~~-------~~~~it~~~~~~~l~~~~  223 (226)
T PRK09087        170 -------QLYVDPHVVYYLVSR-M------ERSLFAAQTIVDRLDRL---ALE-------RKSRITRALAAEVLNEMG  223 (226)
T ss_pred             -------CCCCCHHHHHHHHHH-h------hhhHHHHHHHHHHHHHH---HHH-------hCCCCCHHHHHHHHHhhc
Confidence                   124566777755544 4      34555666666555221   110       113588888888887654

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.42  E-value=6.9e-13  Score=128.88  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=95.4

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc-cc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-DL  249 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~-~l  249 (445)
                      ++|++++.+.+...                  .....++||+||||||||++|+++|+.+...+     +|..+.+. ..
T Consensus        22 i~gre~vI~lll~a------------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~-----~F~~~~~~ftt   78 (498)
T PRK13531         22 LYERSHAIRLCLLA------------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRFST   78 (498)
T ss_pred             ccCcHHHHHHHHHH------------------HccCCCEEEECCCChhHHHHHHHHHHHhcccC-----cceeeeeeecC
Confidence            89999888777653                  23467999999999999999999999876422     33333332 11


Q ss_pred             cccccCCc-hhHH--HHHHHHc------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc------------
Q 013316          250 VGEFVGHT-GPKT--RRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------------  308 (445)
Q Consensus       250 ~~~~~g~~-~~~~--~~~~~~a------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~------------  308 (445)
                      ...++|.. -...  ...|...      ...+||+|||..+.+           ..++.|+..|+++.            
T Consensus        79 p~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp-----------~~QsaLLeam~Er~~t~g~~~~~lp~  147 (498)
T PRK13531         79 PEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERRFRNGAHEEKIPM  147 (498)
T ss_pred             cHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCH-----------HHHHHHHHHHHhCeEecCCeEEeCCC
Confidence            23445532 1110  1122211      113899999977766           88999999996532            


Q ss_pred             EEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHHHHHHHHH
Q 013316          309 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILHIK  355 (445)
Q Consensus       309 ~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~~  355 (445)
                      .++++||++-+-  --...+++..||-..+.+|+|+ .++-.+|+...
T Consensus       148 rfiv~ATN~LPE--~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~  193 (498)
T PRK13531        148 RLLVTASNELPE--ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ  193 (498)
T ss_pred             cEEEEECCCCcc--cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence            255555542221  0011357899998889999997 46657777653

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=2.1e-12  Score=116.85  Aligned_cols=125  Identities=31%  Similarity=0.360  Sum_probs=112.7

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc-----HHHHHHhhcCCCCCCc---cccccc
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK-----AEIVKSLLEWPGNDKV---ELEAQN   82 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~~~g~---~v~~~d   82 (445)
                      ..+.+++|.++..++...+..++ ..+.+++..+. .|.||||+|+..++     .+++++|++.    |+   +.+.+|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~----g~~~~~~~~~~  144 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLL-ASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEA----GADLDVNNLRD  144 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHH-HcCCCcccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHc----CCCCCCccccC
Confidence            34789999999999999987666 46788888886 79999999999999     9999999995    66   556779


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      ..|.||||+|+..|+.+++.+|++.|++++.++..|.|++ +.++..+..+++..+...+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTAL-DPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcch-hhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999 8899999999999887665

>PHA02792 ankyrin-like protein; Provisional

Probab=99.42  E-value=5.5e-13  Score=133.60  Aligned_cols=133  Identities=11%  Similarity=0.014  Sum_probs=105.3

Q ss_pred             CccCCC-CCchHhHHHH-HcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHh-CCcHHHHHHhhcCCCCC--------
Q 013316            6 DRRSRS-AKPATIHGCA-QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAG-YNKAEIVKSLLEWPGND--------   74 (445)
Q Consensus         6 ~~~~~~-~~~t~L~~A~-~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~-~g~~~iv~~Ll~~~~~~--------   74 (445)
                      .++..+ .|.+++|+-| ..|++++++.|+. +|+++|..++ .|.+|+|+|+. .++++++++|++.+.+.        
T Consensus        63 ~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~-~GAdvN~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         63 SVDYKNINDFDIFEYLCSDNIDIELLKLLIS-KGLEINSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             CCCcCccCCccHHHHHHHhcccHHHHHHHHH-cCCCcccccC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            344444 5677777544 4689999987775 6999999997 68999999965 69999999999975320        


Q ss_pred             ------------------------CcccccccCCCCcHHHHHHHcC-------CHHHHHHHHhcCCCCcccccCCCChhh
Q 013316           75 ------------------------KVELEAQNMYGETPLHMAAKNG-------CNEAAKLLLAHGAFIEAKANEGKTPLD  123 (445)
Q Consensus        75 ------------------------g~~v~~~d~~g~tpLh~A~~~g-------~~~~~~~Ll~~ga~~~~~~~~g~tpl~  123 (445)
                                              +..+|..|..|.||||+|+..+       +.+++++|+++|++++.+|..|.||||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~  220 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLY  220 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHH
Confidence                                    0123456677999999999999       899999999999999999999999995


Q ss_pred             hhhcCCC--ChHHHHHHHhh
Q 013316          124 HLSNGPG--SAKLRELLLWH  141 (445)
Q Consensus       124 ~~a~~~~--~~~i~~~ll~~  141 (445)
                      + +....  ..+++++|...
T Consensus       221 ~-~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        221 Y-YVDKCDIKREIFDALFDS  239 (631)
T ss_pred             H-HHHcccchHHHHHHHHhc
Confidence            4 55555  67899988764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.42  E-value=1.1e-12  Score=139.70  Aligned_cols=149  Identities=22%  Similarity=0.196  Sum_probs=96.4

Q ss_pred             ccCccCCC-CCchHhH-HHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc---HHHHHHhhcCCCCCCc--
Q 013316            4 NQDRRSRS-AKPATIH-GCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKV--   76 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~-~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~g~--   76 (445)
                      +.++|..+ .|.|||| .|+..++.++++.|+ ..+.    .+. .|.||||+|+.+++   ..++..+.......+.  
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl-~~g~----~~~-~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~  115 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLL-NLSC----RGA-VGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLE  115 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHH-hCCC----CCC-cChHHHHHHHhccHHHHHHHHHHHhhcccccCchh
Confidence            44455333 5777777 555555555555444 3333    232 46777777665221   2223333332110000  


Q ss_pred             cc----ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc--------------cCCCChhhhhhcCCCChHHHHHH
Q 013316           77 EL----EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NEGKTPLDHLSNGPGSAKLRELL  138 (445)
Q Consensus        77 ~v----~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~--------------~~g~tpl~~~a~~~~~~~i~~~l  138 (445)
                      .+    ...+..|.||||+|+..|+.+++++|+++||+++.++              .+|.||| +.|+..++.+++++|
T Consensus       116 ~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL-~~Aa~~~~~~iv~lL  194 (743)
T TIGR00870       116 LANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPL-NAAACLGSPSIVALL  194 (743)
T ss_pred             hhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHH-HHHHHhCCHHHHHHH
Confidence            01    1123469999999999999999999999999998753              3689999 777888899999999


Q ss_pred             HhhhhhHHhhhhhhhhhhhHH
Q 013316          139 LWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       139 l~~~~~~~~~~~~~~~~~~~a  159 (445)
                      ++++++.+.++..+.++...+
T Consensus       195 l~~gadin~~d~~g~T~Lh~A  215 (743)
T TIGR00870       195 SEDPADILTADSLGNTLLHLL  215 (743)
T ss_pred             hcCCcchhhHhhhhhHHHHHH
Confidence            999998888777666665543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.42  E-value=3.2e-13  Score=134.87  Aligned_cols=142  Identities=27%  Similarity=0.311  Sum_probs=93.2

Q ss_pred             CCchHhHHHHH---cCCHHHHHHHHhhCCCCcCC---CCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc----
Q 013316           12 AKPATIHGCAQ---SGDLLAFQRLLRENPSLLNE---RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ----   81 (445)
Q Consensus        12 ~~~t~L~~A~~---~g~~~~v~~ll~~~~~~~~~---~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~----   81 (445)
                      .|.|.||.|..   .++.+++..||.-.+.-+|.   .+.|.|.||||+|..+.+.++|++|++.    |+||+.+    
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~----gADV~aRa~G~  217 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA----GADVHARACGA  217 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc----CCchhhHhhcc
Confidence            57777777765   34556677666655543333   2345677777777777777777777773    6666532    


Q ss_pred             -------------------cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           82 -------------------NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        82 -------------------d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                                         -.+|+.||-+||-.++.+++++|+++|||++++|.+|+|.| |+.......++-.++++++
T Consensus       218 FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVL-H~lVi~~~~~My~~~L~~g  296 (782)
T KOG3676|consen  218 FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVL-HMLVIHFVTEMYDLALELG  296 (782)
T ss_pred             ccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHH-HHHHHHHHHHHHHHHHhcC
Confidence                               12466777777777777777777777777777777777777 5555556667777777777


Q ss_pred             hh--HHhhhhhhhhhhhH
Q 013316          143 EE--QRKRRALEACSETK  158 (445)
Q Consensus       143 ~~--~~~~~~~~~~~~~~  158 (445)
                      ++  ...+|.-+.+|...
T Consensus       297 a~~l~~v~N~qgLTPLtL  314 (782)
T KOG3676|consen  297 ANALEHVRNNQGLTPLTL  314 (782)
T ss_pred             CCccccccccCCCChHHH
Confidence            76  44455555555443

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.42  E-value=1.7e-11  Score=108.47  Aligned_cols=161  Identities=19%  Similarity=0.281  Sum_probs=109.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++|+|.+..++.|.+-....            +...+..++|++|++|||||++++++...+...+.    .++++..
T Consensus        25 ~l~~L~Gie~Qk~~l~~Nt~~F------------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL----RlIev~k   88 (249)
T PF05673_consen   25 RLDDLIGIERQKEALIENTEQF------------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL----RLIEVSK   88 (249)
T ss_pred             CHHHhcCHHHHHHHHHHHHHHH------------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc----eEEEECH
Confidence            4677999999998887644333            22457789999999999999999999999987665    8899888


Q ss_pred             ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEecCchh
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSEP  319 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~~~~~  319 (445)
                      .++..      -..+-+.++.. ..=|||+|+.   +....    +   .....|...||+      .++++.+++|...
T Consensus        89 ~~L~~------l~~l~~~l~~~~~kFIlf~DDL---sFe~~----d---~~yk~LKs~LeGgle~~P~NvliyATSNRRH  152 (249)
T PF05673_consen   89 EDLGD------LPELLDLLRDRPYKFILFCDDL---SFEEG----D---TEYKALKSVLEGGLEARPDNVLIYATSNRRH  152 (249)
T ss_pred             HHhcc------HHHHHHHHhcCCCCEEEEecCC---CCCCC----c---HHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence            77632      12233334322 3469999985   22111    1   334567777775      3455555444332


Q ss_pred             HH-HHHhh---------C--------cccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          320 MK-RVIAS---------N--------EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       320 ~~-~~~~~---------~--------~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      .. .....         +        -+|.+||...|.|.+|+.++-.+|+++++.+.
T Consensus       153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~  210 (249)
T PF05673_consen  153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY  210 (249)
T ss_pred             ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence            21 11100         1        34777999999999999999999999999764

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=4.3e-12  Score=131.15  Aligned_cols=178  Identities=19%  Similarity=0.339  Sum_probs=130.1

Q ss_pred             HHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316          164 LENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  242 (445)
Q Consensus       164 ~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~  242 (445)
                      +.+.|.+ ++||+++...|.+.+..-       ..+.... .+...++|.||.|||||-+|+++|..+..    ....|+
T Consensus       556 L~~~L~~~V~gQ~eAv~aIa~AI~~s-------r~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg----se~~~I  623 (898)
T KOG1051|consen  556 LEERLHERVIGQDEAVAAIAAAIRRS-------RAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG----SEENFI  623 (898)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHhh-------hcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC----CccceE
Confidence            4445544 999999998888865432       3333322 46778999999999999999999999865    334789


Q ss_pred             Eeeccc------cccc---ccCCch-hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc----
Q 013316          243 EVQRTD------LVGE---FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----  308 (445)
Q Consensus       243 ~~~~~~------l~~~---~~g~~~-~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----  308 (445)
                      .++.+.      +.+.   |+|+++ ..+...++..+++||+|||||..++           .+++.|++++|+|+    
T Consensus       624 riDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~GrltDs  692 (898)
T KOG1051|consen  624 RLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRLTDS  692 (898)
T ss_pred             EechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCccccC
Confidence            999885      4343   777744 4788888888999999999999998           89999999999754    


Q ss_pred             ---------EEEEEecCchhH--H-H--------------------------H------HhhCcccccccccceeCCCCC
Q 013316          309 ---------VVVIFAGYSEPM--K-R--------------------------V------IASNEGFCRRVTKFFHFNDFN  344 (445)
Q Consensus       309 ---------~~~i~a~~~~~~--~-~--------------------------~------~~~~~~l~~R~~~~i~~~~~~  344 (445)
                               .+||++.+...-  . .                          .      ....|.+..|.+..+.|.+++
T Consensus       693 ~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~  772 (898)
T KOG1051|consen  693 HGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLD  772 (898)
T ss_pred             CCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccc
Confidence                     477776432111  0 0                          0      001255666888899999999


Q ss_pred             HHHHHHHHHHHHhccccccc
Q 013316          345 SEELAKILHIKMNNQTEDSL  364 (445)
Q Consensus       345 ~~~~~~il~~~l~~~~~~~~  364 (445)
                      .+++.+|....+.+...++.
T Consensus       773 ~~~~~~i~~~~~~e~~~r~~  792 (898)
T KOG1051|consen  773 RDELIEIVNKQLTEIEKRLE  792 (898)
T ss_pred             hhhHhhhhhhHHHHHHHHhh
Confidence            99999999888776644433

>PHA02244 ATPase-like protein

Probab=99.41  E-value=3.6e-12  Score=119.75  Aligned_cols=125  Identities=22%  Similarity=0.199  Sum_probs=81.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCc--hhHHH--HHHH-HccCcEEEEcCcc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT--GPKTR--RRIK-EAEGGILFVDEAY  279 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~--~~~~~--~~~~-~a~~~il~lDEid  279 (445)
                      ...+++|+||||||||++|+++|+.++.       +|+.++...-...+.|..  .....  .++. ...+++|||||++
T Consensus       118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~-------pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId  190 (383)
T PHA02244        118 ANIPVFLKGGAGSGKNHIAEQIAEALDL-------DFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEID  190 (383)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcC
Confidence            4568999999999999999999999876       777776421111122210  00111  1222 3478999999998


Q ss_pred             ccccCCCCCCchhHHHHHHHHHhhccC-------------CcEEEEEecCchh--HHHH----HhhCcccccccccceeC
Q 013316          280 RLIPMQKADDKDYGIEALEEIMSVMDG-------------GKVVVIFAGYSEP--MKRV----IASNEGFCRRVTKFFHF  340 (445)
Q Consensus       280 ~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~i~a~~~~~--~~~~----~~~~~~l~~R~~~~i~~  340 (445)
                      .+.+           +++..|...++.             .++.+|+++++..  +...    ...++++++|| ..|+|
T Consensus       191 ~a~p-----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~  258 (383)
T PHA02244        191 ASIP-----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEF  258 (383)
T ss_pred             cCCH-----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeC
Confidence            8876           566666666642             3567777776531  1111    23479999999 67999


Q ss_pred             CCCCHHHH
Q 013316          341 NDFNSEEL  348 (445)
Q Consensus       341 ~~~~~~~~  348 (445)
                      +.|+..|.
T Consensus       259 dyp~~~E~  266 (383)
T PHA02244        259 DYDEKIEH  266 (383)
T ss_pred             CCCcHHHH
Confidence            99885443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.40  E-value=6.8e-13  Score=132.60  Aligned_cols=124  Identities=27%  Similarity=0.297  Sum_probs=112.7

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCC----------------------CCCCChHHHHHHhCCcHHHHHHhhc
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERN----------------------PVMAQTPLHVSAGYNKAEIVKSLLE   69 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----------------------~~~g~tpLh~A~~~g~~~iv~~Ll~   69 (445)
                      .|.||||.|+.+.+.+.|+.|+. .|+||+.+.                      -|.|..||.+||-.++++|+++|++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            69999999999999999998775 577777531                      1458899999999999999999999


Q ss_pred             CCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCC--CcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        70 ~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~--~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                      +    |+|++.+|..|+|.||..+.+-..++..+++++|++  ...+|..|.||| -+|+..+..++.+.+++.
T Consensus       262 ~----gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPL-tLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 H----GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPL-TLAAKLGKKEMFQHILER  330 (782)
T ss_pred             c----CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChH-HHHHHhhhHHHHHHHHHh
Confidence            5    999999999999999999999999999999999999  899999999999 889999999999998877

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.40  E-value=3.6e-12  Score=113.61  Aligned_cols=186  Identities=18%  Similarity=0.247  Sum_probs=114.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccCC-----chh--HHHHHHHHccCc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGH-----TGP--KTRRRIKEAEGG  271 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-----~~g~-----~~~--~~~~~~~~a~~~  271 (445)
                      ....+||+.||+|.||+.+||.|...-.. ..--+++|++++|+.+.+.     +||+     ++.  .-..++..|.||
T Consensus       206 rsr~p~ll~gptgagksflarriyelk~a-rhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg  284 (531)
T COG4650         206 RSRAPILLNGPTGAGKSFLARRIYELKQA-RHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG  284 (531)
T ss_pred             hccCCeEeecCCCcchhHHHHHHHHHHHH-HHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence            45678999999999999999999875443 2234669999999987643     6776     221  223478899999


Q ss_pred             EEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEe-------------cCchhHHHHHhh--Cccccccccc
Q 013316          272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFA-------------GYSEPMKRVIAS--NEGFCRRVTK  336 (445)
Q Consensus       272 il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a-------------~~~~~~~~~~~~--~~~l~~R~~~  336 (445)
                      .||||||..+..           +-+..|++.+++.++.-+++             |-.+.-..+.+.  .+.|..|+ .
T Consensus       285 mlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-n  352 (531)
T COG4650         285 MLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-N  352 (531)
T ss_pred             eEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-h
Confidence            999999966654           55678888888755433332             222211111000  02223344 3


Q ss_pred             ceeCCCCC----HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          337 FFHFNDFN----SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       337 ~i~~~~~~----~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      .+.|..|.    .+++..-+..-+.+.....+ .    ...+..++-...++...+...++.||.|++..-+.++
T Consensus       353 lwtf~lpgl~qr~ediepnldyelerha~~~g-~----~vrfntearra~l~fa~spqa~w~gnfrelsasvtrm  422 (531)
T COG4650         353 LWTFTLPGLRQRQEDIEPNLDYELERHASLTG-D----SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM  422 (531)
T ss_pred             eeeeeccccccCccccCCCccHHHHHHHHhhC-c----eeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHH
Confidence            34555554    34444334333333322211 1    2234445655566666667788899999999998887

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=1.2e-12  Score=115.24  Aligned_cols=124  Identities=24%  Similarity=0.252  Sum_probs=111.1

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc-ccCCCCcHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMYGETPLH   90 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~-~d~~g~tpLh   90 (445)
                      .-..||..+.-+|+.+.+..||.. .-.+|.+|+ .|+++|..|+..|+.++|++||++    |+|+|. ++.-+.||||
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~-sGMs~LahAaykGnl~~v~lll~~----gaDvN~~qhg~~YTpLm   84 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST-VRQVNQRDP-SGMSVLAHAAYKGNLTLVELLLEL----GADVNDKQHGTLYTPLM   84 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH-hhhhhccCC-CcccHHHHHHhcCcHHHHHHHHHh----CCCcCcccccccccHHH
Confidence            346799999999999999999865 456899997 899999999999999999999997    899976 5667899999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      +|+..|+.+++++|++.|+.+...|.-|.|+- ..|+..|+.+++..+-.+.
T Consensus        85 FAALSGn~dvcrllldaGa~~~~vNsvgrTAa-qmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARMYLVNSVGRTAA-QMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             HHHHcCCchHHHHHHhccCccccccchhhhHH-HHHHHhcchHHHHHHhccc
Confidence            99999999999999999999999999999998 7788888899998875544

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.39  E-value=3.5e-12  Score=129.91  Aligned_cols=146  Identities=16%  Similarity=0.233  Sum_probs=88.5

Q ss_pred             HHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------------cEEEEEecCchhH
Q 013316          264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM  320 (445)
Q Consensus       264 ~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~~~  320 (445)
                      .|.+|.+|+|||||++.+.+           ..+..|++.|+.+                       ++.+|++++.+..
T Consensus       221 ~L~kAnGGtL~LDei~~L~~-----------~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll  289 (637)
T PRK13765        221 AIHKAHKGVLFIDEINTLDL-----------ESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL  289 (637)
T ss_pred             ceeECCCcEEEEeChHhCCH-----------HHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH
Confidence            56678899999999988865           6778888887543                       3478888887654


Q ss_pred             HHHHhhCcccccccc---cceeCCCCC---HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc-
Q 013316          321 KRVIASNEGFCRRVT---KFFHFNDFN---SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR-  393 (445)
Q Consensus       321 ~~~~~~~~~l~~R~~---~~i~~~~~~---~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-  393 (445)
                      ..+   +|.|++||.   ..+.|..-.   ++.+..+++ ++.+....   .  ...+.++.+++..++.+++...-.+ 
T Consensus       290 ~~~---dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~-~iaqe~~~---~--G~l~~f~~eAVa~LI~~~~R~ag~r~  360 (637)
T PRK13765        290 ENM---HPALRSRIKGYGYEVYMRDTMEDTPENRRKLVR-FVAQEVKR---D--GKIPHFDRDAVEEIIREAKRRAGRKG  360 (637)
T ss_pred             Hhh---hHHHHHHhccCeEEEEcccccCCCHHHHHHHHH-HHHHHhhh---c--cCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence            444   899999985   556665422   444444444 33322111   1  1234788999999998877332211 


Q ss_pred             --ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          394 --EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       394 --~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                        ....|++.+++..|...+.         .+....|+.+|+.+|+.
T Consensus       361 ~lsl~~~~l~~l~r~a~~~a~---------~~~~~~i~~~~v~~a~~  398 (637)
T PRK13765        361 HLTLKLRDLGGLVRVAGDIAR---------SEGAELTTAEHVLEAKK  398 (637)
T ss_pred             ccccCHHHHHHHHHHHHHHHH---------hhccceecHHHHHHHHH
Confidence              1335667777776622211         11223466666665543

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.38  E-value=7.5e-12  Score=119.63  Aligned_cols=157  Identities=18%  Similarity=0.199  Sum_probs=100.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE-Ee-
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT-EV-  244 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~-~~-  244 (445)
                      .+.+|+|++.+++.+...+..               ...+..+||+||+|+|||++|+.+|+.+.+...-...+.. .. 
T Consensus        21 ~~~~l~Gh~~a~~~L~~a~~~---------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~   85 (351)
T PRK09112         21 ENTRLFGHEEAEAFLAQAYRE---------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP   85 (351)
T ss_pred             chhhccCcHHHHHHHHHHHHc---------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence            467799999999998885542               2345569999999999999999999998662110000000 00 


Q ss_pred             --ecc---ccccc----c--c----CC---------chhHHHHHH---HHc----cCcEEEEcCccccccCCCCCCchhH
Q 013316          245 --QRT---DLVGE----F--V----GH---------TGPKTRRRI---KEA----EGGILFVDEAYRLIPMQKADDKDYG  293 (445)
Q Consensus       245 --~~~---~l~~~----~--~----g~---------~~~~~~~~~---~~a----~~~il~lDEid~l~~~~~~~~~~~~  293 (445)
                        .|.   .+...    +  +    ..         +-..++++.   ...    ...|++|||+|.+..          
T Consensus        86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------  155 (351)
T PRK09112         86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------  155 (351)
T ss_pred             CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence              110   00000    0  0    00         112333332   221    337999999999976          


Q ss_pred             HHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316          294 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK  355 (445)
Q Consensus       294 ~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~  355 (445)
                       ..++.|++.+++  .+.++|+.++...  .+   .|.+++|| ..+.|++|+.+++.+++...
T Consensus       156 -~aanaLLk~LEEpp~~~~fiLit~~~~--~l---lptIrSRc-~~i~l~pl~~~~~~~~L~~~  212 (351)
T PRK09112        156 -NAANAILKTLEEPPARALFILISHSSG--RL---LPTIRSRC-QPISLKPLDDDELKKALSHL  212 (351)
T ss_pred             -HHHHHHHHHHhcCCCCceEEEEECChh--hc---cHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence             778889999987  3334444333221  22   68899999 89999999999999999873

>PRK09862 putative ATP-dependent protease; Provisional

Probab=99.38  E-value=2.3e-12  Score=127.57  Aligned_cols=152  Identities=21%  Similarity=0.264  Sum_probs=100.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC------------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG------------  234 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~------------  234 (445)
                      .+.++.|+..+++.+.-                  ......+++|+||||+|||++++.++..+....            
T Consensus       189 d~~~v~Gq~~~~~al~l------------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s  250 (506)
T PRK09862        189 DLSDVIGQEQGKRGLEI------------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS  250 (506)
T ss_pred             CeEEEECcHHHHhhhhe------------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence            56678888776655432                  234567899999999999999999987653110            


Q ss_pred             ---------CCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316          235 ---------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  305 (445)
Q Consensus       235 ---------~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  305 (445)
                               .+...||...+.+.-...++|.....-...+..|.+|||||||++.+.+           ..++.|++.|+
T Consensus       251 ~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~-----------~~~~~L~~~LE  319 (506)
T PRK09862        251 LVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER-----------RTLDALREPIE  319 (506)
T ss_pred             hhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCH-----------HHHHHHHHHHH
Confidence                     0112234433333222334453322334678999999999999966654           78888998887


Q ss_pred             CCc---------------EEEEEecCchhHHH----------------HHhhCcccccccccceeCCCCCHHH
Q 013316          306 GGK---------------VVVIFAGYSEPMKR----------------VIASNEGFCRRVTKFFHFNDFNSEE  347 (445)
Q Consensus       306 ~~~---------------~~~i~a~~~~~~~~----------------~~~~~~~l~~R~~~~i~~~~~~~~~  347 (445)
                      ++.               +.+|+++++.+-..                .-...+++++|||..+.++.++.++
T Consensus       320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~  392 (506)
T PRK09862        320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGI  392 (506)
T ss_pred             cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence            643               57787777664111                1134678999999999999887553

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.38  E-value=5.1e-12  Score=111.15  Aligned_cols=129  Identities=15%  Similarity=0.204  Sum_probs=85.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE  267 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~  267 (445)
                      .+..+||+||+|+|||++|+.+++.+........                 ..+..+....   ...  .-..++.+++.
T Consensus        13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~--~~~~i~~i~~~   87 (188)
T TIGR00678        13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSI--KVDQVRELVEF   87 (188)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcC--CHHHHHHHHHH
Confidence            4567999999999999999999999865311000                 0111111110   000  12344444444


Q ss_pred             c-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccce
Q 013316          268 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF  338 (445)
Q Consensus       268 a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i  338 (445)
                      +       ...|++|||+|.+.+           ..++.|+..|++  ...++|+.++..  ..   ..+++++|+ ..+
T Consensus        88 ~~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~~~~~~~il~~~~~--~~---l~~~i~sr~-~~~  150 (188)
T TIGR00678        88 LSRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEPPPNTLFILITPSP--EK---LLPTIRSRC-QVL  150 (188)
T ss_pred             HccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECCh--Hh---ChHHHHhhc-EEe
Confidence            3       347999999999976           667889999886  335555554432  22   378899999 799


Q ss_pred             eCCCCCHHHHHHHHHHH
Q 013316          339 HFNDFNSEELAKILHIK  355 (445)
Q Consensus       339 ~~~~~~~~~~~~il~~~  355 (445)
                      .|++|+.+++.+++...
T Consensus       151 ~~~~~~~~~~~~~l~~~  167 (188)
T TIGR00678       151 PFPPLSEEALLQWLIRQ  167 (188)
T ss_pred             eCCCCCHHHHHHHHHHc
Confidence            99999999998887664

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.38  E-value=2.5e-12  Score=115.30  Aligned_cols=171  Identities=15%  Similarity=0.215  Sum_probs=105.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-chhHHHHHHHHc-cCcEEEEcCcccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRLIP  283 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a-~~~il~lDEid~l~~  283 (445)
                      ..+++||||+|+|||.+.+++++++....  ....++.+++..+...+... ....+.+..+.- ..-+|+||+++.+..
T Consensus        34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~--~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~  111 (219)
T PF00308_consen   34 YNPLFLYGPSGLGKTHLLQAIANEAQKQH--PGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG  111 (219)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHHC--TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhcc--ccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC
Confidence            44689999999999999999999876521  12267788877765443221 011122222222 347999999999975


Q ss_pred             CCCCCCchhHHHHHHHHHhhc----cCCcEEEEEecCc-hhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHH
Q 013316          284 MQKADDKDYGIEALEEIMSVM----DGGKVVVIFAGYS-EPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       284 ~~~~~~~~~~~~~~~~ll~~~----~~~~~~~i~a~~~-~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l  356 (445)
                      +.         ..+..|...+    +.++.+++.+... ..+.   ..+|.|++||.  ..+.+.+|+.+++..|++..+
T Consensus       112 ~~---------~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~---~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a  179 (219)
T PF00308_consen  112 KQ---------RTQEELFHLFNRLIESGKQLILTSDRPPSELS---GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA  179 (219)
T ss_dssp             HH---------HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT---TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred             ch---------HHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc---ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence            32         2344444443    3466555555333 2222   23788999995  678999999999999999988


Q ss_pred             hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      .+..           ..++++++..+..+ +      +.|.|.+..++.+..
T Consensus       180 ~~~~-----------~~l~~~v~~~l~~~-~------~~~~r~L~~~l~~l~  213 (219)
T PF00308_consen  180 KERG-----------IELPEEVIEYLARR-F------RRDVRELEGALNRLD  213 (219)
T ss_dssp             HHTT-------------S-HHHHHHHHHH-T------TSSHHHHHHHHHHHH
T ss_pred             HHhC-----------CCCcHHHHHHHHHh-h------cCCHHHHHHHHHHHH
Confidence            8642           23566677755544 3      668888888888763

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.37  E-value=3.6e-12  Score=130.24  Aligned_cols=133  Identities=20%  Similarity=0.202  Sum_probs=94.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCch--hHH--------HHHHHHccCcEEEE
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG--PKT--------RRRIKEAEGGILFV  275 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~--~~~--------~~~~~~a~~~il~l  275 (445)
                      ..+|||.|+||||||++||++|+.+...     .+|+.+........++|...  ..+        ...|.++.+|||||
T Consensus        16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~-----~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~l   90 (589)
T TIGR02031        16 LGGVAIRARAGTGKTALARALAEILPPI-----MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYV   90 (589)
T ss_pred             cceEEEEcCCCcHHHHHHHHHHHhCCcC-----CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence            4589999999999999999999987641     26777776444445555421  000        12455678899999


Q ss_pred             cCccccccCCCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeC
Q 013316          276 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF  340 (445)
Q Consensus       276 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~  340 (445)
                      |||+.+.+           ..++.|+..|+++.               +.+|++.++.+..  ....++|.+||+.++.+
T Consensus        91 DEi~rl~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~LldRf~l~v~~  157 (589)
T TIGR02031        91 DMANLLDD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHLLDRLALHVSL  157 (589)
T ss_pred             cchhhCCH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHHHHhccCeeec
Confidence            99988887           88899999997653               4666655554311  12367899999987766


Q ss_pred             CC-CCHHHHHHHHHHHH
Q 013316          341 ND-FNSEELAKILHIKM  356 (445)
Q Consensus       341 ~~-~~~~~~~~il~~~l  356 (445)
                      .. ++.+++.+|++.++
T Consensus       158 ~~~~~~~er~eil~~~~  174 (589)
T TIGR02031       158 EDVASQDLRVEIVRRER  174 (589)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            54 45677889998766

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.37  E-value=2e-11  Score=115.17  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=105.7

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC-----------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----------  235 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~-----------  235 (445)
                      .|++|+|++.+++.+.+.+..               ..-++..||+||+|+||+++|+++++.+.+...           
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~---------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~   66 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQ---------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE   66 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence            477899999999999886542               234678999999999999999999999865321           


Q ss_pred             CCCCCeEEeecccc-cccc--------cC-------C-chhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCch
Q 013316          236 LPTDRVTEVQRTDL-VGEF--------VG-------H-TGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKD  291 (445)
Q Consensus       236 ~~~~~~~~~~~~~l-~~~~--------~g-------~-~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~  291 (445)
                      .....+..+.+... .++.        .|       . .-..++++.+.       +.+.|++||++|.+..        
T Consensus        67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~--------  138 (314)
T PRK07399         67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE--------  138 (314)
T ss_pred             CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH--------
Confidence            01111222222110 0110        01       0 01234444332       2458999999988876        


Q ss_pred             hHHHHHHHHHhhccC-CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316          292 YGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       292 ~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l  356 (445)
                         .+.+.||+.|++ .+.++|+.++..  ..+   -|.+++|+ ..+.|++++.+++.+++....
T Consensus       139 ---~aaNaLLK~LEEPp~~~fILi~~~~--~~L---l~TI~SRc-q~i~f~~l~~~~~~~~L~~~~  195 (314)
T PRK07399        139 ---AAANALLKTLEEPGNGTLILIAPSP--ESL---LPTIVSRC-QIIPFYRLSDEQLEQVLKRLG  195 (314)
T ss_pred             ---HHHHHHHHHHhCCCCCeEEEEECCh--HhC---cHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence               778999999986 333445544322  222   58899998 999999999999999988753

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=99.37  E-value=2.2e-11  Score=114.89  Aligned_cols=160  Identities=21%  Similarity=0.204  Sum_probs=105.9

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe------
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV------  241 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~------  241 (445)
                      |..++|++..+..|.--  .+              ...-.++|+.|+.|||||++||+|+..|.....+...+|      
T Consensus        16 f~aivGqd~lk~aL~l~--av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~   79 (423)
T COG1239          16 FTAIVGQDPLKLALGLN--AV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD   79 (423)
T ss_pred             hhhhcCchHHHHHHhhh--hc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence            34589999988766531  11              234558999999999999999999999864332221111      


Q ss_pred             ---------------------------EEeecccccccccCC-ch-hHH--------HHHHHHccCcEEEEcCccccccC
Q 013316          242 ---------------------------TEVQRTDLVGEFVGH-TG-PKT--------RRRIKEAEGGILFVDEAYRLIPM  284 (445)
Q Consensus       242 ---------------------------~~~~~~~l~~~~~g~-~~-~~~--------~~~~~~a~~~il~lDEid~l~~~  284 (445)
                                                 +......-...++|. .- +.+        ..++-+|..||||+||+-.|.. 
T Consensus        80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d-  158 (423)
T COG1239          80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD-  158 (423)
T ss_pred             hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH-
Confidence                                       111111111112332 00 011        1245667889999999955554 


Q ss_pred             CCCCCchhHHHHHHHHHhhccCC---------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHH
Q 013316          285 QKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEEL  348 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~  348 (445)
                                .+++.||..++.+               ++++|++.|+..-.    +.|.|+.||...+....|+ .+++
T Consensus       159 ----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGe----LrpqLlDRfg~~v~~~~~~~~~~r  224 (423)
T COG1239         159 ----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGE----LRPQLLDRFGLEVDTHYPLDLEER  224 (423)
T ss_pred             ----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccc----cchhhHhhhcceeeccCCCCHHHH
Confidence                      8899999988763               36788887776332    3799999999988766665 8999


Q ss_pred             HHHHHHHHhc
Q 013316          349 AKILHIKMNN  358 (445)
Q Consensus       349 ~~il~~~l~~  358 (445)
                      .+|+++.+..
T Consensus       225 v~Ii~r~~~f  234 (423)
T COG1239         225 VEIIRRRLAF  234 (423)
T ss_pred             HHHHHHHHHh
Confidence            9999887664

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.37  E-value=1.2e-12  Score=95.44  Aligned_cols=98  Identities=23%  Similarity=0.268  Sum_probs=85.7

Q ss_pred             ChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC
Q 013316           49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG  128 (445)
Q Consensus        49 ~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~  128 (445)
                      ..-+.|+..+|.++-|+-.+.    .|.+||-.- .|++|||+|+-+|..++.++|+..||+++.+|+.|-||| ..|.-
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~----~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPL-LsAvw   76 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVN----EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPL-LSAVW   76 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHH----ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHH-HHHHH
Confidence            356789999999999987776    377887543 799999999999999999999999999999999999999 88888


Q ss_pred             CCChHHHHHHHhhhhhHHhhhhhh
Q 013316          129 PGSAKLRELLLWHSEEQRKRRALE  152 (445)
Q Consensus       129 ~~~~~i~~~ll~~~~~~~~~~~~~  152 (445)
                      .++..++++|++.|++...+.+.+
T Consensus        77 EGH~~cVklLL~~GAdrt~~~PdG  100 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRTIHAPDG  100 (117)
T ss_pred             HhhHHHHHHHHHcCcccceeCCCc
Confidence            999999999999999866555444

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=1.8e-12  Score=88.91  Aligned_cols=54  Identities=50%  Similarity=0.660  Sum_probs=37.5

Q ss_pred             CChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 013316           48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL  105 (445)
Q Consensus        48 g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll  105 (445)
                      |+||||+||..|+.+++++|++.    |.++|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~----~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH----GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT----TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56788888888888888888874    6777777888888888888888888887775

...

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.36  E-value=2.8e-11  Score=116.30  Aligned_cols=158  Identities=15%  Similarity=0.170  Sum_probs=103.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------  239 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~-------  239 (445)
                      .+++|+|++.+++.+.+.+..               ...+..+||+||+|+||+++|.++|+.+.+.......       
T Consensus        17 ~~~~iiGq~~~~~~L~~~~~~---------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~   81 (365)
T PRK07471         17 ETTALFGHAAAEAALLDAYRS---------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT   81 (365)
T ss_pred             chhhccChHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence            466799999999998875442               2345569999999999999999999999653311100       


Q ss_pred             --------------------CeEEeecc--cccccccCC-chhHHHHHHHHc-------cCcEEEEcCccccccCCCCCC
Q 013316          240 --------------------RVTEVQRT--DLVGEFVGH-TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADD  289 (445)
Q Consensus       240 --------------------~~~~~~~~--~l~~~~~g~-~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~  289 (445)
                                          .+..+...  +-.+..... .-..++.+.+..       ...|++|||+|.+..      
T Consensus        82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------  155 (365)
T PRK07471         82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------  155 (365)
T ss_pred             cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence                                01111110  000000000 123344444332       347999999998876      


Q ss_pred             chhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316          290 KDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       290 ~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l  356 (445)
                           ..++.|++.+++  ...++|+.+.....  +   .|.+++|+ ..+.|++|+.+++.+++....
T Consensus       156 -----~aanaLLK~LEepp~~~~~IL~t~~~~~--l---lpti~SRc-~~i~l~~l~~~~i~~~L~~~~  213 (365)
T PRK07471        156 -----NAANALLKVLEEPPARSLFLLVSHAPAR--L---LPTIRSRC-RKLRLRPLAPEDVIDALAAAG  213 (365)
T ss_pred             -----HHHHHHHHHHhcCCCCeEEEEEECCchh--c---hHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence                 788999999987  34455554443322  1   57789998 999999999999999987643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=2.3e-12  Score=122.04  Aligned_cols=119  Identities=27%  Similarity=0.258  Sum_probs=97.8

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHc
Q 013316           16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN   95 (445)
Q Consensus        16 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~   95 (445)
                      -|.-|+..|.++.|+.++.+ -.++...++ .|-|+||-|+..||++||+||+.    .|++||..|.+|+||||.|+++
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqpNd-EGITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQPND-EGITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCCCc-cchhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhc
Confidence            35688999999999998865 355666666 59999999999999999999999    4999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccc-cCCCChhhhhhc-CCCChHHHHHHHh
Q 013316           96 GCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLSN-GPGSAKLRELLLW  140 (445)
Q Consensus        96 g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~-~~~~~~i~~~ll~  140 (445)
                      +++.+++.|++.|+.+.+.. .++.||.+.+.. ..|+..|.++|..
T Consensus       627 Nnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999999999987654 667888743221 2356667777643

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.35  E-value=9.5e-12  Score=126.43  Aligned_cols=204  Identities=14%  Similarity=0.151  Sum_probs=115.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++|+....+.|+.++.....           ...+...++|+||||||||++++.++..++....--..++.+...
T Consensus        82 ~ldel~~~~~ki~~l~~~l~~~~~-----------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~  150 (637)
T TIGR00602        82 TQHELAVHKKKIEEVETWLKAQVL-----------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ  150 (637)
T ss_pred             CHHHhcCcHHHHHHHHHHHHhccc-----------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence            467899999998888887654421           122223488999999999999999999876411000001100000


Q ss_pred             ccc------cccccC---CchhHHHHHHHHc-------------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHh--
Q 013316          247 TDL------VGEFVG---HTGPKTRRRIKEA-------------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS--  302 (445)
Q Consensus       247 ~~l------~~~~~g---~~~~~~~~~~~~a-------------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~--  302 (445)
                      +..      .+.-++   .....+.+.+..+             ...||||||++.+.....        ..+..++.  
T Consensus       151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--------~~lq~lLr~~  222 (637)
T TIGR00602       151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--------RALHEILRWK  222 (637)
T ss_pred             ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------HHHHHHHHHH
Confidence            000      000011   1222333333332             236999999998764211        34555554  


Q ss_pred             hccCCcEEEEEecCchhH------HHHHh----hCccccc--ccccceeCCCCCHHHHHHHHHHHHhccccccccccccc
Q 013316          303 VMDGGKVVVIFAGYSEPM------KRVIA----SNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKL  370 (445)
Q Consensus       303 ~~~~~~~~~i~a~~~~~~------~~~~~----~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~  370 (445)
                      ..+.+++.+|++++..+.      ...+.    ..|++++  |+ .+|.|+++++.++...|+..+.+......     .
T Consensus       223 ~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~-----~  296 (637)
T TIGR00602       223 YVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG-----E  296 (637)
T ss_pred             hhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc-----c
Confidence            455677777776654322      11111    2367776  44 67999999999999999998886532111     0


Q ss_pred             CCcc-cHHHHHHHHHHHHHHhhhcccC
Q 013316          371 HSSC-SMDAIAALIEKETTEKQRREMN  396 (445)
Q Consensus       371 ~~~~-~~~~l~~~~~~~~~~~~~~~~n  396 (445)
                      ...+ +++++..++ ..+.||+|.+.|
T Consensus       297 ~~~~p~~~~l~~I~-~~s~GDiRsAIn  322 (637)
T TIGR00602       297 KIKVPKKTSVELLC-QGCSGDIRSAIN  322 (637)
T ss_pred             ccccCCHHHHHHHH-HhCCChHHHHHH
Confidence            0111 345666554 456666666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.34  E-value=2.9e-12  Score=119.21  Aligned_cols=133  Identities=17%  Similarity=0.118  Sum_probs=93.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--ccCCchhH------H----HHHHHH--ccCc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVGHTGPK------T----RRRIKE--AEGG  271 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~--~~g~~~~~------~----~~~~~~--a~~~  271 (445)
                      ..+++|.||||||||++|+.+|+.++.       +++.++++.-...  ++|.....      .    ...+-.  ..++
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~-------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~  136 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNW-------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNV  136 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCC-------CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCe
Confidence            468999999999999999999999987       8888887764433  55542111      0    112222  2567


Q ss_pred             EEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----------------CcEEEEEecCchh-------HHHHHhhCc
Q 013316          272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------------GKVVVIFAGYSEP-------MKRVIASNE  328 (445)
Q Consensus       272 il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~~~~i~a~~~~~-------~~~~~~~~~  328 (445)
                      +|++||++...+           ++++.|...++.                ..+.+|++.|+..       +.-....++
T Consensus       137 illlDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~  205 (327)
T TIGR01650       137 ALCFDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ  205 (327)
T ss_pred             EEEechhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence            899999998877           455555444442                2356777766643       232334478


Q ss_pred             ccccccccceeCCCCCHHHHHHHHHHHH
Q 013316          329 GFCRRVTKFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       329 ~l~~R~~~~i~~~~~~~~~~~~il~~~l  356 (445)
                      ++++||-.++.++.|+.++-.+|+....
T Consensus       206 A~lDRF~i~~~~~Yp~~e~E~~Il~~~~  233 (327)
T TIGR01650       206 AQMDRWSIVTTLNYLEHDNEAAIVLAKA  233 (327)
T ss_pred             HHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence            9999997788999999999999987654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.33  E-value=2e-11  Score=111.73  Aligned_cols=133  Identities=18%  Similarity=0.220  Sum_probs=82.9

Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhH-------HHHHhhCcccccccccceeCC
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPM-------KRVIASNEGFCRRVTKFFHFN  341 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~-------~~~~~~~~~l~~R~~~~i~~~  341 (445)
                      +|||||||+|.|--           +...-|-+.|++ ---++|+|||+...       ..+.-+...|++|+ ..|...
T Consensus       292 pGVLFIDEvHmLDI-----------E~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~  359 (450)
T COG1224         292 PGVLFIDEVHMLDI-----------ECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTR  359 (450)
T ss_pred             cceEEEechhhhhH-----------HHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEecC
Confidence            38999999977753           666677777776 34466666654322       11222235577887 888999


Q ss_pred             CCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCC
Q 013316          342 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLD  421 (445)
Q Consensus       342 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~  421 (445)
                      +|+.+|+.+|++..+.+.           ...++++++..+..--....      .|..-+++.-+.-.+         .
T Consensus       360 py~~~EireIi~iRa~ee-----------~i~l~~~Ale~L~~ig~etS------LRYa~qLL~pa~iiA---------~  413 (450)
T COG1224         360 PYSREEIREIIRIRAKEE-----------DIELSDDALEYLTDIGEETS------LRYAVQLLTPASIIA---------K  413 (450)
T ss_pred             CCCHHHHHHHHHHhhhhh-----------ccccCHHHHHHHHhhchhhh------HHHHHHhccHHHHHH---------H
Confidence            999999999999988875           33567778886654333222      333344444331111         1


Q ss_pred             hhhhhhccHHHHHHHHHHH
Q 013316          422 TDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       422 ~~~~~~i~~~d~~~a~~~~  440 (445)
                      ..+...|..+|++.+-.-|
T Consensus       414 ~rg~~~V~~~dVe~a~~lF  432 (450)
T COG1224         414 RRGSKRVEVEDVERAKELF  432 (450)
T ss_pred             HhCCCeeehhHHHHHHHHH
Confidence            1223367888888776544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.31  E-value=3.5e-12  Score=126.07  Aligned_cols=138  Identities=26%  Similarity=0.292  Sum_probs=120.3

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhC------------CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316           14 PATIHGCAQSGDLLAFQRLLREN------------PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus        14 ~t~L~~A~~~g~~~~v~~ll~~~------------~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .+-+..||..|+.+.+..+|...            ...+|..|- +|.|+||.||.+|+.+++++|+++    .+-+++.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~-~gfTalhha~Lng~~~is~llle~----ea~ldl~   78 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDY-SGFTLLHHAVLNGQNQISKLLLDY----EALLDLC   78 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCc-cchhHHHHHHhcCchHHHHHHhcc----hhhhhhh
Confidence            35678999999999999998752            245667774 899999999999999999999996    5678889


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      |..|.+|||+|++.|+.+++++++..+..+|+.+..|.||| |.++..++.+++.+|+.+++++.-++.-..++..
T Consensus        79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tpl-hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ld  153 (854)
T KOG0507|consen   79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPL-HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLD  153 (854)
T ss_pred             hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCcc-chhhhhcchHHHHHHHhcCCCccccCcccccHHH
Confidence            99999999999999999999999999999999999999999 8888899999999999999998777654444433

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.31  E-value=1.2e-10  Score=108.60  Aligned_cols=204  Identities=18%  Similarity=0.202  Sum_probs=116.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE--eeccccc---ccccCCc-----hh----HHHHHH----HH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDLV---GEFVGHT-----GP----KTRRRI----KE  267 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~--~~~~~l~---~~~~g~~-----~~----~~~~~~----~~  267 (445)
                      +..++|+||+|+|||++++.++..+..... ....+..  .+..++.   ...+|..     ..    .+...+    ..
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~  121 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA  121 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            446889999999999999999988753111 0000000  1111111   1112321     11    111111    12


Q ss_pred             ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc-C-CcEEEEEecCchhHHHHHh-hCcccccccccceeCCCCC
Q 013316          268 AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-G-GKVVVIFAGYSEPMKRVIA-SNEGFCRRVTKFFHFNDFN  344 (445)
Q Consensus       268 a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~-~-~~~~~i~a~~~~~~~~~~~-~~~~l~~R~~~~i~~~~~~  344 (445)
                      .+..+|+|||+|.+.+.        ..+.+..|..... . ..+.+++++.+.....+.. ....+.+|+...+.+++++
T Consensus       122 ~~~~vliiDe~~~l~~~--------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~  193 (269)
T TIGR03015       122 GKRALLVVDEAQNLTPE--------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD  193 (269)
T ss_pred             CCCeEEEEECcccCCHH--------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC
Confidence            24579999999988641        1122333333222 2 2234456655543322211 1234777888889999999


Q ss_pred             HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhh
Q 013316          345 SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDE  424 (445)
Q Consensus       345 ~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~  424 (445)
                      .+|..+++...+.....       .-...++++++..+ ...+      .|+.+.+..++..+......         .+
T Consensus       194 ~~e~~~~l~~~l~~~g~-------~~~~~~~~~~~~~i-~~~s------~G~p~~i~~l~~~~~~~a~~---------~~  250 (269)
T TIGR03015       194 REETREYIEHRLERAGN-------RDAPVFSEGAFDAI-HRFS------RGIPRLINILCDRLLLSAFL---------EE  250 (269)
T ss_pred             HHHHHHHHHHHHHHcCC-------CCCCCcCHHHHHHH-HHHc------CCcccHHHHHHHHHHHHHHH---------cC
Confidence            99999999998875421       11234677776644 4555      67778888888877443222         12


Q ss_pred             hhhccHHHHHHHHHHHH
Q 013316          425 LRTITLEDLEAGLKLLL  441 (445)
Q Consensus       425 ~~~i~~~d~~~a~~~~~  441 (445)
                      ...|+.++|.+++..+.
T Consensus       251 ~~~i~~~~v~~~~~~~~  267 (269)
T TIGR03015       251 KREIGGEEVREVIAEID  267 (269)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            23799999999998764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.7e-12  Score=89.46  Aligned_cols=47  Identities=49%  Similarity=0.790  Sum_probs=22.9

Q ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316           76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL  122 (445)
Q Consensus        76 ~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl  122 (445)
                      .+++.+|..|.||||+|+.+|+.+++++|++.|++++.+|..|+||+
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl   53 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPL   53 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HH
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHH
Confidence            56666777777777777777777777777777777777777777776

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.31  E-value=2.3e-11  Score=116.16  Aligned_cols=150  Identities=17%  Similarity=0.234  Sum_probs=100.8

Q ss_pred             HHhhhc-chHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-------
Q 013316          168 LSNIVG-LHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------  239 (445)
Q Consensus       168 ~~~l~g-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~-------  239 (445)
                      |+.|+| ++.+++.+...+..               ...+...||+||+|+||+++|+.+++.+.+.......       
T Consensus         4 ~~~i~~~q~~~~~~L~~~~~~---------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~   68 (329)
T PRK08058          4 WEQLTALQPVVVKMLQNSIAK---------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTN   68 (329)
T ss_pred             HHHHHhhHHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHH
Confidence            667888 88888888875431               2345556999999999999999999998653211110       


Q ss_pred             ----------CeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHh
Q 013316          240 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  302 (445)
Q Consensus       240 ----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~  302 (445)
                                .+..+...   +..+  .-..++.+.+.       +...|++|||+|.+..           ++++.|++
T Consensus        69 c~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK  132 (329)
T PRK08058         69 CKRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLK  132 (329)
T ss_pred             HHHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHH
Confidence                      11111111   0000  12344444432       2347999999988876           78899999


Q ss_pred             hccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHH
Q 013316          303 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI  354 (445)
Q Consensus       303 ~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~  354 (445)
                      .+++  ...++|+.++...  .+   -|++++|+ ..++|++|+.+++.+.+..
T Consensus       133 ~LEEPp~~~~~Il~t~~~~--~l---l~TIrSRc-~~i~~~~~~~~~~~~~L~~  180 (329)
T PRK08058        133 FLEEPSGGTTAILLTENKH--QI---LPTILSRC-QVVEFRPLPPESLIQRLQE  180 (329)
T ss_pred             HhcCCCCCceEEEEeCChH--hC---cHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence            9997  5566666554322  22   58899999 9999999999998777753

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.31  E-value=2.8e-11  Score=112.61  Aligned_cols=95  Identities=21%  Similarity=0.276  Sum_probs=58.5

Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH-------HHHhhCcccccccccceeCC
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK-------RVIASNEGFCRRVTKFFHFN  341 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~-------~~~~~~~~l~~R~~~~i~~~  341 (445)
                      +|||||||+|.|.-           +...-|-+.|+. -.-++|+||++....       .+.-+...|++|+ ..|...
T Consensus       279 pGVLFIDEvHmLDi-----------EcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~t~  346 (398)
T PF06068_consen  279 PGVLFIDEVHMLDI-----------ECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIRTK  346 (398)
T ss_dssp             E-EEEEESGGGSBH-----------HHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEEE-
T ss_pred             cceEEecchhhccH-----------HHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEECC
Confidence            39999999998875           777777788876 345666666533221       1111124578888 888999


Q ss_pred             CCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316          342 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  387 (445)
Q Consensus       342 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  387 (445)
                      +|+.+|+.+|+...+++.           ...++.+++..+..-..
T Consensus       347 py~~~ei~~Il~iR~~~E-----------~v~i~~~al~~L~~ig~  381 (398)
T PF06068_consen  347 PYSEEEIKQILKIRAKEE-----------DVEISEDALDLLTKIGV  381 (398)
T ss_dssp             ---HHHHHHHHHHHHHHC-----------T--B-HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhhhhh-----------cCcCCHHHHHHHHHHhh
Confidence            999999999999999875           23566778776654333

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.30  E-value=1.9e-12  Score=89.25  Aligned_cols=55  Identities=36%  Similarity=0.636  Sum_probs=32.4

Q ss_pred             HhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316           33 LRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA   92 (445)
Q Consensus        33 l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A   92 (445)
                      |+..+.++|..|. .|.||||+||.+|+.+++++|++    .|++++.+|..|+||||+|
T Consensus         2 L~~~~~~~n~~d~-~G~T~LH~A~~~g~~~~v~~Ll~----~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDK-YGNTPLHWAARYGHSEVVRLLLQ----NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---T-TS--HHHHHHHHT-HHHHHHHHH----CT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCC-CCCcHHHHHHHcCcHHHHHHHHH----CcCCCCCCcCCCCCHHHhC
Confidence            4444588899997 79999999999999999999997    4899999999999999997

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.30  E-value=2.3e-11  Score=116.78  Aligned_cols=146  Identities=20%  Similarity=0.217  Sum_probs=96.2

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC-------------
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-------------  236 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~-------------  236 (445)
                      ++++.+++...+..+....              ...+..+||+||||||||++|.++|+.+......             
T Consensus         2 ~~~~~~~~~~~l~~~~~~~--------------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~   67 (325)
T COG0470           2 ELVPWQEAVKRLLVQALES--------------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKL   67 (325)
T ss_pred             CcccchhHHHHHHHHHHhc--------------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhH
Confidence            3667777777776654322              1223349999999999999999999999753310             


Q ss_pred             ----CCCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316          237 ----PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  305 (445)
Q Consensus       237 ----~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  305 (445)
                          ....+.++++++....-+  ....++++.+.       ....|++|||+|.+..           .+++.|++.++
T Consensus        68 ~~~~~~~d~lel~~s~~~~~~i--~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lE  134 (325)
T COG0470          68 IPAGNHPDFLELNPSDLRKIDI--IVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLE  134 (325)
T ss_pred             HhhcCCCceEEecccccCCCcc--hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhc
Confidence                123677888877543211  12223333222       1347999999999987           78899999998


Q ss_pred             C--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHH
Q 013316          306 G--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL  348 (445)
Q Consensus       306 ~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~  348 (445)
                      .  ....+|+.++..  ..+   -|.+++|+ ..++|++++....
T Consensus       135 ep~~~~~~il~~n~~--~~i---l~tI~SRc-~~i~f~~~~~~~~  173 (325)
T COG0470         135 EPPKNTRFILITNDP--SKI---LPTIRSRC-QRIRFKPPSRLEA  173 (325)
T ss_pred             cCCCCeEEEEEcCCh--hhc---cchhhhcc-eeeecCCchHHHH
Confidence            6  455666665521  222   57899999 9999998554444

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.29  E-value=1.5e-11  Score=103.36  Aligned_cols=124  Identities=23%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhH------HHHHHHHccCcEEEEcCc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK------TRRRIKEAEGGILFVDEA  278 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~------~~~~~~~a~~~il~lDEi  278 (445)
                      ...+++++||||||||++++.++..+...    ..+++.+++..............      ..........++|+|||+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~   93 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRP----GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEI   93 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcC----CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence            45689999999999999999999988532    23788888776544322111110      111222335699999999


Q ss_pred             cccccCCCCCCchhHHHHHHHHHhhcc----CCcEEEEEecCchhHHHHHhhCcccccccccceeCCC
Q 013316          279 YRLIPMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND  342 (445)
Q Consensus       279 d~l~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~  342 (445)
                      +.+.+       .........+.....    ..++.+|++++....   ...++.+.+||+..+.+++
T Consensus        94 ~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~i~~~~  151 (151)
T cd00009          94 DSLSR-------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIRIVIPL  151 (151)
T ss_pred             hhhhH-------HHHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccEeecCC
Confidence            88733       111122222222222    256777777776553   2236778889988887763

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.29  E-value=1.8e-12  Score=108.17  Aligned_cols=108  Identities=28%  Similarity=0.417  Sum_probs=68.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc--ccccCCchhH------HHHHHHH--ccCcEEEEcC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--GEFVGHTGPK------TRRRIKE--AEGGILFVDE  277 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~--~~~~g~~~~~------~~~~~~~--a~~~il~lDE  277 (445)
                      +|+|+||||||||++|+.+|+.++.       +++.++++...  ..++|.-...      ....+-.  .+++++||||
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~-------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDE   73 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGR-------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDE   73 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTC-------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECC
Confidence            6899999999999999999999965       77777776522  1122220000      0000110  1679999999


Q ss_pred             ccccccCCCCCCchhHHHHHHHHHhhccCC---------------------cEEEEEecCchhHHHHHhhCccccccc
Q 013316          278 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------------KVVVIFAGYSEPMKRVIASNEGFCRRV  334 (445)
Q Consensus       278 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------------~~~~i~a~~~~~~~~~~~~~~~l~~R~  334 (445)
                      |+...+           +++..|+..++++                     .+.+|++.++.. ...-..+++|++||
T Consensus        74 in~a~~-----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   74 INRAPP-----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF  139 (139)
T ss_dssp             CGG--H-----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred             cccCCH-----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence            987775           7888888887651                     167777777665 33334578899887

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.28  E-value=8.1e-11  Score=112.05  Aligned_cols=154  Identities=14%  Similarity=0.246  Sum_probs=103.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC-CCCeEEee
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-TDRVTEVQ  245 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-~~~~~~~~  245 (445)
                      .|++++|++.+++.+...+..               ...+...||+||+|+|||++|+.+++.+.+..... ...+..+.
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~---------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~   66 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIK---------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK   66 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHc---------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence            378899999999988886531               23445678999999999999999999886532111 11232332


Q ss_pred             cccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecC
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY  316 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~  316 (445)
                      ..  .+..+  .-..++.+.+..       ...|++||++|.+..           .+.+.|++.+++  ...++|+.++
T Consensus        67 ~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp~~t~~il~~~  131 (313)
T PRK05564         67 PI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPPKGVFIILLCE  131 (313)
T ss_pred             cc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeC
Confidence            21  11111  223455555422       347999999988876           778999999987  3344444443


Q ss_pred             chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316          317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l  356 (445)
                      +.  ..   .-|.+++|+ ..++|++++.+++...+....
T Consensus       132 ~~--~~---ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~  165 (313)
T PRK05564        132 NL--EQ---ILDTIKSRC-QIYKLNRLSKEEIEKFISYKY  165 (313)
T ss_pred             Ch--Hh---CcHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence            32  22   268899999 899999999999988776543

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.26  E-value=1.5e-11  Score=117.87  Aligned_cols=132  Identities=24%  Similarity=0.285  Sum_probs=88.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc--cccccCCchhHHH----HHHHHccC-------c
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL--VGEFVGHTGPKTR----RRIKEAEG-------G  271 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l--~~~~~g~~~~~~~----~~~~~a~~-------~  271 (445)
                      ...+++|.||||||||++|+.+|..++.       +|+.+.|..-  -+..+|...-...    ..+.-..+       +
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~~-------~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~  114 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALGL-------PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRV  114 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhCC-------CeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccce
Confidence            3569999999999999999999999986       8999988852  2334443222211    11111111       4


Q ss_pred             EEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------------cEEEEEecCchhHHHHHhhCcccccccccc
Q 013316          272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKF  337 (445)
Q Consensus       272 il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~  337 (445)
                      |+|+|||++..+           ++++.|+..|++.              .+++|+++|+..........+++++||...
T Consensus       115 ill~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~  183 (329)
T COG0714         115 ILLLDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLR  183 (329)
T ss_pred             EEEEeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEE
Confidence            999999988877           8899999999862              234444545433333333468899999988


Q ss_pred             eeCCCCCHH-HHHHHHHH
Q 013316          338 FHFNDFNSE-ELAKILHI  354 (445)
Q Consensus       338 i~~~~~~~~-~~~~il~~  354 (445)
                      +.++.|+.+ +...++.+
T Consensus       184 ~~v~yp~~~~e~~~i~~~  201 (329)
T COG0714         184 IYVDYPDSEEEERIILAR  201 (329)
T ss_pred             EecCCCCchHHHHHHHHh
Confidence            999999544 44444443

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.26  E-value=7.6e-10  Score=96.28  Aligned_cols=196  Identities=20%  Similarity=0.271  Sum_probs=125.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+.+|+|.+..++.+.+-....            ....+..+||++|..||||++++|++..++...+.    .+++|+.
T Consensus        58 ~L~~l~Gvd~qk~~L~~NT~~F------------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----rLVEV~k  121 (287)
T COG2607          58 DLADLVGVDRQKEALVRNTEQF------------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL----RLVEVDK  121 (287)
T ss_pred             CHHHHhCchHHHHHHHHHHHHH------------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC----eEEEEcH
Confidence            4677999999998887633222            12346678999999999999999999999987655    6999998


Q ss_pred             ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEecCchh
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSEP  319 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~~~~~  319 (445)
                      +++..      -..+-+.++.. +.=|||+|+.   +-       +.+......|...+++      .++++-+++|+..
T Consensus       122 ~dl~~------Lp~l~~~Lr~~~~kFIlFcDDL---SF-------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH  185 (287)
T COG2607         122 EDLAT------LPDLVELLRARPEKFILFCDDL---SF-------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH  185 (287)
T ss_pred             HHHhh------HHHHHHHHhcCCceEEEEecCC---CC-------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence            88742      12233333333 4579999986   11       1122455667777775      2445554444332


Q ss_pred             HH-HHHhhC----------------cccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHH
Q 013316          320 MK-RVIASN----------------EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL  382 (445)
Q Consensus       320 ~~-~~~~~~----------------~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  382 (445)
                      .. .....+                -+|..||.-.+.|++++.++-..|+++++++..         +  +.+++.+.. 
T Consensus       186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~---------l--~~~~e~l~~-  253 (287)
T COG2607         186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG---------L--DISDEELHA-  253 (287)
T ss_pred             cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC---------C--CCCHHHHHH-
Confidence            22 111111                236679999999999999999999999998752         2  233444442 


Q ss_pred             HHHHHHHhhhcccCchhhHHHHHHH
Q 013316          383 IEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       383 ~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      -+..| +..|..-+||-....+.-.
T Consensus       254 eAl~W-At~rg~RSGR~A~QF~~~~  277 (287)
T COG2607         254 EALQW-ATTRGGRSGRVAWQFIRDL  277 (287)
T ss_pred             HHHHH-HHhcCCCccHhHHHHHHHH
Confidence            22334 2234455677766666544

>PRK04132 replication factor C small subunit; Provisional

Probab=99.25  E-value=7.2e-11  Score=123.13  Aligned_cols=157  Identities=22%  Similarity=0.214  Sum_probs=111.8

Q ss_pred             eeEeec--CCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---------cCcEEEEc
Q 013316          208 HMAFLG--NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---------EGGILFVD  276 (445)
Q Consensus       208 ~vll~G--p~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---------~~~il~lD  276 (445)
                      +-++.|  |++.||||+|++||+.+...+  ...+++++++|+..+      -..+++++..+         +..|+|||
T Consensus       566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~--~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID  637 (846)
T PRK04132        566 HNFIGGNLPTVLHNTTAALALARELFGEN--WRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD  637 (846)
T ss_pred             hhhhcCCCCCcccHHHHHHHHHHhhhccc--ccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence            455668  999999999999999984311  123799999998532      23445544331         23699999


Q ss_pred             CccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHH
Q 013316          277 EAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI  354 (445)
Q Consensus       277 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~  354 (445)
                      |+|.+.+           .+++.|++.|+.  +.+.+|+++++..  .+   .|++++|| ..+.|++|+.+++...++.
T Consensus       638 EaD~Lt~-----------~AQnALLk~lEep~~~~~FILi~N~~~--kI---i~tIrSRC-~~i~F~~ls~~~i~~~L~~  700 (846)
T PRK04132        638 EADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS--KI---IEPIQSRC-AIFRFRPLRDEDIAKRLRY  700 (846)
T ss_pred             CcccCCH-----------HHHHHHHHHhhCCCCCeEEEEEeCChh--hC---chHHhhhc-eEEeCCCCCHHHHHHHHHH
Confidence            9999986           788999999995  6677777766432  22   68899998 9999999999999999998


Q ss_pred             HHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          355 KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      .+.+..           ..++++++. .+...+.|      +.|.+.++++.+
T Consensus       701 I~~~Eg-----------i~i~~e~L~-~Ia~~s~G------DlR~AIn~Lq~~  735 (846)
T PRK04132        701 IAENEG-----------LELTEEGLQ-AILYIAEG------DMRRAINILQAA  735 (846)
T ss_pred             HHHhcC-----------CCCCHHHHH-HHHHHcCC------CHHHHHHHHHHH
Confidence            777531           234566666 44466644      445555566654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.25  E-value=1.5e-11  Score=84.22  Aligned_cols=54  Identities=33%  Similarity=0.437  Sum_probs=44.6

Q ss_pred             CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhh
Q 013316           13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLL   68 (445)
Q Consensus        13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll   68 (445)
                      |.||||+||..|+.++++.|+.. +.++|.+|. .|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~-~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDE-DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-T-TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCC-CCCCHHHHHHHccCHHHHHHHC
Confidence            67999999999999999998865 899999987 7999999999999999999986

...

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.24  E-value=1.4e-10  Score=99.02  Aligned_cols=137  Identities=18%  Similarity=0.224  Sum_probs=84.1

Q ss_pred             cchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC----------------
Q 013316          173 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL----------------  236 (445)
Q Consensus       173 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~----------------  236 (445)
                      |++.+++.|.+.+..               ...+..+||+||+|+||+++|+.+++.+......                
T Consensus         1 gq~~~~~~L~~~~~~---------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~   65 (162)
T PF13177_consen    1 GQEEIIELLKNLIKS---------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEG   65 (162)
T ss_dssp             S-HHHHHHHHHHHHC---------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHc---------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhc
Confidence            677777777775542               2345568999999999999999999998654332                


Q ss_pred             CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--C
Q 013316          237 PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G  307 (445)
Q Consensus       237 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~  307 (445)
                      ....+..+....... .  -.-..++.+.+..       ...|++|||+|.+..           ++++.||+.||+  .
T Consensus        66 ~~~d~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp~  131 (162)
T PF13177_consen   66 NHPDFIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPPE  131 (162)
T ss_dssp             -CTTEEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTTT
T ss_pred             cCcceEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCCC
Confidence            122333333322100 0  0234555555443       347999999999987           899999999997  3


Q ss_pred             cEEEEEecCchhHHHHHhhCcccccccccceeCCCCC
Q 013316          308 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN  344 (445)
Q Consensus       308 ~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~  344 (445)
                      ..++|+.+++....     -|.+++|+ ..+.|++++
T Consensus       132 ~~~fiL~t~~~~~i-----l~TI~SRc-~~i~~~~ls  162 (162)
T PF13177_consen  132 NTYFILITNNPSKI-----LPTIRSRC-QVIRFRPLS  162 (162)
T ss_dssp             TEEEEEEES-GGGS------HHHHTTS-EEEEE----
T ss_pred             CEEEEEEECChHHC-----hHHHHhhc-eEEecCCCC
Confidence            56666654433221     58899998 888888764

...

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.23  E-value=2.2e-12  Score=102.33  Aligned_cols=109  Identities=25%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc-ccc-ccccCCchhHH-HHHHHHcc----CcEEEEcCccc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-DLV-GEFVGHTGPKT-RRRIKEAE----GGILFVDEAYR  280 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~-~l~-~~~~g~~~~~~-~~~~~~a~----~~il~lDEid~  280 (445)
                      |+||.|+||+|||++|+++|+.++.       .|..+.++ ++. +...|..--.. ...|+-.+    ..|+++|||.+
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~-------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr   73 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGL-------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR   73 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT---------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCC-------ceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc
Confidence            6899999999999999999999876       77777664 322 22222200000 01111111    27999999977


Q ss_pred             cccCCCCCCchhHHHHHHHHHhhccCCc-------------EEEEEecCchhHHHHHhhCccccccc
Q 013316          281 LIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRVIASNEGFCRRV  334 (445)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------~~~i~a~~~~~~~~~~~~~~~l~~R~  334 (445)
                      ..+           +.|+.|++.|++++             ++||++.|+.+..-......++++||
T Consensus        74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF  129 (131)
T PF07726_consen   74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF  129 (131)
T ss_dssp             S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred             CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence            666           88999999998644             35666656544333334456677776

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.22  E-value=5.8e-11  Score=96.44  Aligned_cols=94  Identities=44%  Similarity=0.645  Sum_probs=85.8

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS  126 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a  126 (445)
                      .|.||||+|+..++.+++++|++.    +.+.+..+..|.||+|.|+..++.+++++|++.|++++..+..|.||+ +++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l-~~a   80 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPL-HLA   80 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHH
Confidence            699999999999999999999996    666688899999999999999999999999999999999999999999 778


Q ss_pred             cCCCChHHHHHHHhhhhhH
Q 013316          127 NGPGSAKLRELLLWHSEEQ  145 (445)
Q Consensus       127 ~~~~~~~i~~~ll~~~~~~  145 (445)
                      ...++.+++++|+..+.+.
T Consensus        81 ~~~~~~~~~~~L~~~~~~~   99 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADV   99 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCC
Confidence            8888899999999876443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.22  E-value=2.1e-10  Score=110.85  Aligned_cols=154  Identities=19%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..++++++.+...+.+...+.                  ...+++|+||||||||++|+.+|..+..........++.++
T Consensus       172 ~~l~d~~i~e~~le~l~~~L~------------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH  233 (459)
T PRK11331        172 DALNDLFIPETTIETILKRLT------------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH  233 (459)
T ss_pred             HHhhcccCCHHHHHHHHHHHh------------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec
Confidence            346667777766666554321                  35689999999999999999999987532111111233343


Q ss_pred             cc----cccccc----cCCc--hhHHHHHHHHc-----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc-----
Q 013316          246 RT----DLVGEF----VGHT--GPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-----  305 (445)
Q Consensus       246 ~~----~l~~~~----~g~~--~~~~~~~~~~a-----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~-----  305 (445)
                      .+    ++++.+    .|..  ...+.+.+..|     .+.+||||||++....+          +..+++..|+     
T Consensus       234 psySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg  303 (459)
T PRK11331        234 QSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRG  303 (459)
T ss_pred             ccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccc
Confidence            32    232221    1211  11223333333     35899999998877532          2233333332     


Q ss_pred             -------------------CCcEEEEEecCchhHHHHHhhCcccccccccceeCCC-CCHHHHH
Q 013316          306 -------------------GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND-FNSEELA  349 (445)
Q Consensus       306 -------------------~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~-~~~~~~~  349 (445)
                                         ..++.+|+|.|..+- .+...|.+|+||| ..|++.+ ++.++..
T Consensus       304 ~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr-s~~~lD~AlrRRF-~fi~i~p~~~~~~~~  365 (459)
T PRK11331        304 ENWSVPLTYSENDEERFYVPENVYIIGLMNTADR-SLAVVDYALRRRF-SFIDIEPGFDTPQFR  365 (459)
T ss_pred             cccceeeeccccccccccCCCCeEEEEecCcccc-chhhccHHHHhhh-heEEecCCCChHHHH
Confidence                               135678887766553 2334599999999 5555554 5554333

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=99.22  E-value=2.8e-11  Score=109.44  Aligned_cols=180  Identities=16%  Similarity=0.183  Sum_probs=115.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+.++++++++...+.++..                ...-+|+|||||||||||+...+.|..+..+.. .+.-+.+++.
T Consensus        39 ~l~dv~~~~ei~st~~~~~~----------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~-~~~m~lelna  101 (360)
T KOG0990|consen   39 FLGIVIKQEPIWSTENRYSG----------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHP-TTSMLLELNA  101 (360)
T ss_pred             hhhhHhcCCchhhHHHHhcc----------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCC-chhHHHHhhc
Confidence            45678999988887777522                334449999999999999999999998876311 0001333444


Q ss_pred             ccccccccCCchhHHHHHHHHcc----------CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEE-EEE
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE----------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVV-VIF  313 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~----------~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~-~i~  313 (445)
                      |+-.+.-   ......+.|..++          -..++|||+|....           .+|+.|-+.++.  .+.+ ++.
T Consensus       102 Sd~rgid---~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~-----------~AQnALRRviek~t~n~rF~ii  167 (360)
T KOG0990|consen  102 SDDRGID---PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-----------DAQNALRRVIEKYTANTRFATI  167 (360)
T ss_pred             cCccCCc---chHHHHHHHHhhccceeccccCceeEEEecchhHhhH-----------HHHHHHHHHHHHhccceEEEEe
Confidence            4322211   1112223333332          36899999988775           788888887765  2222 233


Q ss_pred             ecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      +.+.   .   .+.|++++|| ..+.|.+.+..+....+.+.+....           ...+++.... ....+.||+|.
T Consensus       168 ~n~~---~---ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~-----------~~~~~~~~~a-~~r~s~gDmr~  228 (360)
T KOG0990|consen  168 SNPP---Q---KIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ-----------KETNPEGYSA-LGRLSVGDMRV  228 (360)
T ss_pred             ccCh---h---hcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcch-----------hhcCHHHHHH-HHHHhHHHHHH
Confidence            3222   2   2379999999 9999999999999999999887653           2334444443 33556677766


Q ss_pred             ccC
Q 013316          394 EMN  396 (445)
Q Consensus       394 ~~n  396 (445)
                      ..|
T Consensus       229 a~n  231 (360)
T KOG0990|consen  229 ALN  231 (360)
T ss_pred             HHH
Confidence            554

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=7.8e-11  Score=119.44  Aligned_cols=208  Identities=25%  Similarity=0.323  Sum_probs=147.0

Q ss_pred             CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHcc---CcEEEEcC
Q 013316          201 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDE  277 (445)
Q Consensus       201 ~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDE  277 (445)
                      .+..++.+++++||||||||++++.++.. ..       .+..++.+...+++.|++....+..|..+.   .+++|+||
T Consensus        13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~   84 (494)
T COG0464          13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GA-------EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE   84 (494)
T ss_pred             hCCCCCCCceeeCCCCCchhHHHHHHHhc-cC-------cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence            44678899999999999999999999988 22       337788888999999999999999987773   38999999


Q ss_pred             ccccccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHH
Q 013316          278 AYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKIL  352 (445)
Q Consensus       278 id~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il  352 (445)
                      +|.+.+.+..........+...++..++.   +.++++.+++....     .++++++  ||+..+.++.++...+.+|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~ei~  159 (494)
T COG0464          85 IDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG-----LDPAKRRPGRFDREIEVNLPDEAGRLEIL  159 (494)
T ss_pred             hhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccc-----cChhHhCccccceeeecCCCCHHHHHHHH
Confidence            99999988875566777888888888875   33555554333322     3677666  99999999999999888888


Q ss_pred             HHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHH
Q 013316          353 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLED  432 (445)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  432 (445)
                      ......+.         .....+.+.++.....++         +.++..+...+......+..   ........++.+|
T Consensus       160 ~~~~~~~~---------~~~~~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~r~~---~~~~~~~~~~~~~  218 (494)
T COG0464         160 QIHTRLMF---------LGPPGTGKTLAARTVGKS---------GADLGALAKEAALRELRRAI---DLVGEYIGVTEDD  218 (494)
T ss_pred             HHHHhcCC---------CcccccHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHHhhh---ccCcccccccHHH
Confidence            87666542         222445555554444444         44455555444333333321   1112344678888


Q ss_pred             HHHHHHHHHh
Q 013316          433 LEAGLKLLLR  442 (445)
Q Consensus       433 ~~~a~~~~~~  442 (445)
                      +.++++.+.+
T Consensus       219 ~~~~l~~~~~  228 (494)
T COG0464         219 FEEALKKVLP  228 (494)
T ss_pred             HHHHHHhcCc
Confidence            8888877654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.21  E-value=3.7e-10  Score=112.30  Aligned_cols=188  Identities=19%  Similarity=0.257  Sum_probs=121.1

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHH-----------------HHcCCCCCCCCCC-eeEeecCCCCchhHHHHHH
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERR-----------------KALGLKVGARRPP-HMAFLGNPGTGKTMVARIL  226 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~vll~Gp~GtGKt~~A~~l  226 (445)
                      -..|.+|.|-+.+-+.+.-|++..-.--+.                 ..........++. -+||+||||-||||+|+.|
T Consensus       267 Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHVi  346 (877)
T KOG1969|consen  267 PKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVI  346 (877)
T ss_pred             hhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHH
Confidence            345777888888877777766543211111                 1111222223333 4678999999999999999


Q ss_pred             HHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-----------cCcEEEEcCccccccCCCCCCchhHHH
Q 013316          227 GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-----------EGGILFVDEAYRLIPMQKADDKDYGIE  295 (445)
Q Consensus       227 a~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-----------~~~il~lDEid~l~~~~~~~~~~~~~~  295 (445)
                      |+..+.       .++++++|+-.      ++..+.+.+..|           ++..|+|||||.-.+           .
T Consensus       347 AkqaGY-------sVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-----------~  402 (877)
T KOG1969|consen  347 AKQAGY-------SVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-----------A  402 (877)
T ss_pred             HHhcCc-------eEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH-----------H
Confidence            999887       89999999853      334444433332           457899999976542           4


Q ss_pred             HHHHHHhhccC---------C----------------cEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHH
Q 013316          296 ALEEIMSVMDG---------G----------------KVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEEL  348 (445)
Q Consensus       296 ~~~~ll~~~~~---------~----------------~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~  348 (445)
                      +++.++..+..         +                .|++||-      +.+   .|+||.  -|..+|.|++|+..-+
T Consensus       403 ~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN------dLY---aPaLR~Lr~~A~ii~f~~p~~s~L  473 (877)
T KOG1969|consen  403 AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN------DLY---APALRPLRPFAEIIAFVPPSQSRL  473 (877)
T ss_pred             HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec------Ccc---chhhhhcccceEEEEecCCChhHH
Confidence            55555555541         0                1344442      111   477765  4668999999999999


Q ss_pred             HHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          349 AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       349 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      .+-|+..+.++.           -.++..+|..++. ++..|+|.-.|.
T Consensus       474 v~RL~~IC~rE~-----------mr~d~~aL~~L~e-l~~~DIRsCINt  510 (877)
T KOG1969|consen  474 VERLNEICHREN-----------MRADSKALNALCE-LTQNDIRSCINT  510 (877)
T ss_pred             HHHHHHHHhhhc-----------CCCCHHHHHHHHH-HhcchHHHHHHH
Confidence            988888887752           2556678887774 455677765553

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.20  E-value=3.4e-10  Score=108.32  Aligned_cols=179  Identities=16%  Similarity=0.205  Sum_probs=115.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCcccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIP  283 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~  283 (445)
                      ...+++||||+|.|||.+++++++.....+.  ...++.++...+...++-..-.+-...|++. .--+|+||+|+.+..
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~--~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g  189 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP--NARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG  189 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHHHHhhCC--CceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence            4678999999999999999999999876432  2346667766665444322111111222221 235899999999987


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCCcEEEEEec-CchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316          284 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAG-YSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       284 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~-~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                      +..     ...+....+-...+.++-+++.+. .+..+..   ..|.|++||.  ..+.+.+|+.+.+..|+....... 
T Consensus       190 k~~-----~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~---~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~-  260 (408)
T COG0593         190 KER-----TQEEFFHTFNALLENGKQIVLTSDRPPKELNG---LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR-  260 (408)
T ss_pred             Chh-----HHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc---ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc-
Confidence            532     112344444455556664444433 2333332   3689999995  667999999999999999866553 


Q ss_pred             ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316          361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  411 (445)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~  411 (445)
                                ...++++++..+.. ..      ..|.|++..++++.....
T Consensus       261 ----------~~~i~~ev~~~la~-~~------~~nvReLegaL~~l~~~a  294 (408)
T COG0593         261 ----------GIEIPDEVLEFLAK-RL------DRNVRELEGALNRLDAFA  294 (408)
T ss_pred             ----------CCCCCHHHHHHHHH-Hh------hccHHHHHHHHHHHHHHH
Confidence                      23556666665544 33      578888888888875543

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.16  E-value=2e-09  Score=101.42  Aligned_cols=78  Identities=19%  Similarity=0.206  Sum_probs=57.6

Q ss_pred             cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-------------EEEEEecCchhHHHH--HhhCcccccc
Q 013316          269 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRV--IASNEGFCRR  333 (445)
Q Consensus       269 ~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------~~~i~a~~~~~~~~~--~~~~~~l~~R  333 (445)
                      ..||+-++|+.+...           +++..||..++++.             .++|+++|+.++...  ....++|++|
T Consensus       236 NrGi~~f~Ei~K~~~-----------~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR  304 (361)
T smart00763      236 NRGILEFVEMFKADI-----------KFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDR  304 (361)
T ss_pred             cCceEEEeehhcCCH-----------HHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhc
Confidence            448888889877665           88999999988633             366777777776654  2446899999


Q ss_pred             cccceeCCCCC-HHHHHHHHHHHHhc
Q 013316          334 VTKFFHFNDFN-SEELAKILHIKMNN  358 (445)
Q Consensus       334 ~~~~i~~~~~~-~~~~~~il~~~l~~  358 (445)
                      |. .+.+|.+. .++=.+|.++.+..
T Consensus       305 ~~-~i~vpY~l~~~~E~~Iy~k~~~~  329 (361)
T smart00763      305 II-KVKVPYCLRVSEEAQIYEKLLRN  329 (361)
T ss_pred             eE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence            94 88888776 56667788877764

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.16  E-value=1.7e-09  Score=95.92  Aligned_cols=185  Identities=22%  Similarity=0.291  Sum_probs=115.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC-----------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----------  235 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~-----------  235 (445)
                      .++.+.+.++....++.+..                ...-+|++||||+|+||-|.+-++-++++-.++           
T Consensus        11 sl~~l~~~~e~~~~Lksl~~----------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~   74 (351)
T KOG2035|consen   11 SLDELIYHEELANLLKSLSS----------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT   74 (351)
T ss_pred             hhhhcccHHHHHHHHHHhcc----------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence            34556666666555554311                233579999999999999999999888865442           


Q ss_pred             -----------CCCCCeEEeecccccccccCC-chhHHHHHHHHc------------cCcEEEEcCccccccCCCCCCch
Q 013316          236 -----------LPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA------------EGGILFVDEAYRLIPMQKADDKD  291 (445)
Q Consensus       236 -----------~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a------------~~~il~lDEid~l~~~~~~~~~~  291 (445)
                                 +.+.+-+++++|+     .|. ...-+.+++++.            ...+++|.|+|.|..        
T Consensus        75 tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~--------  141 (351)
T KOG2035|consen   75 TPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR--------  141 (351)
T ss_pred             cCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH--------
Confidence                       1111222222222     233 223334444332            227999999999986        


Q ss_pred             hHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccc
Q 013316          292 YGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK  369 (445)
Q Consensus       292 ~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~  369 (445)
                         ++|..|-+-|+.  +...+|+..+.-  ..+   -+++++|+ ..|++|.|+.+|+..++...+.+..       +.
T Consensus       142 ---dAQ~aLRRTMEkYs~~~RlIl~cns~--Sri---IepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~-------l~  205 (351)
T KOG2035|consen  142 ---DAQHALRRTMEKYSSNCRLILVCNST--SRI---IEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG-------LQ  205 (351)
T ss_pred             ---HHHHHHHHHHHHHhcCceEEEEecCc--ccc---hhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc-------cc
Confidence               788888888875  445555443321  222   47789998 8899999999999999999998752       33


Q ss_pred             cCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          370 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       370 ~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      +    . +.+...+...+      .+|.|..--++|.+
T Consensus       206 l----p-~~~l~rIa~kS------~~nLRrAllmlE~~  232 (351)
T KOG2035|consen  206 L----P-KELLKRIAEKS------NRNLRRALLMLEAV  232 (351)
T ss_pred             C----c-HHHHHHHHHHh------cccHHHHHHHHHHH
Confidence            2    2 34555666666      34444444444443

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.16  E-value=2.7e-10  Score=108.10  Aligned_cols=131  Identities=13%  Similarity=0.112  Sum_probs=89.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-----------------CeEEeecccccccccCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKE  267 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~g~~~~~~~~~~~~  267 (445)
                      .+..+||+||+|+|||++|+.+|+.+.+.......                 .+..+.+..- ++.  -.-..++.+.+.
T Consensus        21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~   97 (328)
T PRK05707         21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF   97 (328)
T ss_pred             cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence            45679999999999999999999999763211111                 1222211100 000  022445555433


Q ss_pred             c-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccce
Q 013316          268 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF  338 (445)
Q Consensus       268 a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i  338 (445)
                      .       ...|++||++|++..           .+.|.||+.+++  +..++|++|+.....     -|.+++|+ +.+
T Consensus        98 ~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp~~~~fiL~t~~~~~l-----l~TI~SRc-~~~  160 (328)
T PRK05707         98 VVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPSGDTVLLLISHQPSRL-----LPTIKSRC-QQQ  160 (328)
T ss_pred             HhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCCCCeEEEEEECChhhC-----cHHHHhhc-eee
Confidence            3       347999999999987           888999999997  566666665543332     68899999 889


Q ss_pred             eCCCCCHHHHHHHHHHH
Q 013316          339 HFNDFNSEELAKILHIK  355 (445)
Q Consensus       339 ~~~~~~~~~~~~il~~~  355 (445)
                      .|++|+.++..+.+...
T Consensus       161 ~~~~~~~~~~~~~L~~~  177 (328)
T PRK05707        161 ACPLPSNEESLQWLQQA  177 (328)
T ss_pred             eCCCcCHHHHHHHHHHh
Confidence            99999999998887654

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=99.15  E-value=1.1e-09  Score=100.32  Aligned_cols=209  Identities=17%  Similarity=0.171  Sum_probs=129.0

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC--CCCCCCeEEeecc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRT  247 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~--~~~~~~~~~~~~~  247 (445)
                      ..||...+++.+..+-.-+..|          ....++++||+|++|.|||++++.+........  -....|++.+...
T Consensus        35 rWIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P  104 (302)
T PF05621_consen   35 RWIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP  104 (302)
T ss_pred             CeecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence            3788887776666543323222          234567899999999999999999987653211  0112266666544


Q ss_pred             c------cccc-----ccCC----c----hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc
Q 013316          248 D------LVGE-----FVGH----T----GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK  308 (445)
Q Consensus       248 ~------l~~~-----~~g~----~----~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~  308 (445)
                      .      |...     +...    +    ...+..+|+...-.+|+|||+|.+...+.    ..-.++++.|...-++-+
T Consensus       105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~NeL~  180 (302)
T PF05621_consen  105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLGNELQ  180 (302)
T ss_pred             CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHhhccC
Confidence            3      1111     1111    1    11223466666778999999999865221    122345555555555677


Q ss_pred             EEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316          309 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  387 (445)
Q Consensus       309 ~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  387 (445)
                      +.+|+.++.+... .+..|+.+.+|| ..+.+|... .++...++..+-....-       .-...+....++..+-..+
T Consensus       181 ipiV~vGt~~A~~-al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPL-------r~~S~l~~~~la~~i~~~s  251 (302)
T PF05621_consen  181 IPIVGVGTREAYR-ALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPL-------RKPSNLASPELARRIHERS  251 (302)
T ss_pred             CCeEEeccHHHHH-HhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCC-------CCCCCCCCHHHHHHHHHHc
Confidence            8888888877665 567799999999 777777776 45666666665544321       2223345556665554544


Q ss_pred             HHhhhcccCchhhHHHHHHH
Q 013316          388 TEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       388 ~~~~~~~~n~r~l~~~~~~~  407 (445)
                            .|+..++.+++..|
T Consensus       252 ------~G~iG~l~~ll~~a  265 (302)
T PF05621_consen  252 ------EGLIGELSRLLNAA  265 (302)
T ss_pred             ------CCchHHHHHHHHHH
Confidence                  56777788888877

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.13  E-value=1e-10  Score=121.92  Aligned_cols=153  Identities=25%  Similarity=0.290  Sum_probs=112.8

Q ss_pred             HHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC
Q 013316           51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG  130 (445)
Q Consensus        51 pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~  130 (445)
                      .|+.|+..|+.+++++|++.    |+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||| |+|...+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~----Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpL-h~A~~~g  159 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG----GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL-ELAEENG  159 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCC
Confidence            58899999999999999995    889999999999999999999999999999999999999999999999 8888999


Q ss_pred             ChHHHHHHHhh-------hhhHHhhhhhhhhhhhHHhHHHHHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCC
Q 013316          131 SAKLRELLLWH-------SEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA  203 (445)
Q Consensus       131 ~~~i~~~ll~~-------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  203 (445)
                      +.+++++|+.+       +++.......+..+               +....+....=.+   ..         ......
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~---------------~~~~~~~~~~~~d---~~---------~~p~p~  212 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANAKPDSFTGKPP---------------SLEDSPISSHHPD---FS---------AVPQPM  212 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCCCccccCCCCc---------------cchhhhhhhcccc---cc---------ccCccc
Confidence            99999999988       33322222111100               0000000000000   00         000011


Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      .....+++.|.||+|||++|+.|++.+.+.++
T Consensus       213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~~~  244 (664)
T PTZ00322        213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWNGL  244 (664)
T ss_pred             ccceeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence            22346889999999999999999999987543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.10  E-value=2.8e-10  Score=102.75  Aligned_cols=102  Identities=34%  Similarity=0.422  Sum_probs=89.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCC-----HHHHHHHHhhCC--CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGD-----LLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN   73 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~-----~~~v~~ll~~~~--~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~   73 (445)
                      +.|++++..+ .|.||||+|+..|+     .++++.++....  ...+..+. .|+||||+|+..|+.+++++|+..   
T Consensus        94 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~ll~~---  169 (235)
T COG0666          94 ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE-DGNTPLHWAALNGDADIVELLLEA---  169 (235)
T ss_pred             HcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC-CCCchhHHHHHcCchHHHHHHHhc---
Confidence            4577777776 69999999999999     999998887544  25556575 899999999999999999999995   


Q ss_pred             CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 013316           74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG  108 (445)
Q Consensus        74 ~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~g  108 (445)
                       |++++..+.+|.|++++|+..++.+++..++..+
T Consensus       170 -~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         170 -GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             -CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence             8899999999999999999999999999999976

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=99.10  E-value=8e-09  Score=102.76  Aligned_cols=207  Identities=18%  Similarity=0.205  Sum_probs=134.7

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH---HcCCCCCCCeEEeeccccccc----------ccCCc------hhHHHHHHH-
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY---MVGILPTDRVTEVQRTDLVGE----------FVGHT------GPKTRRRIK-  266 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~---~~~~~~~~~~~~~~~~~l~~~----------~~g~~------~~~~~~~~~-  266 (445)
                      ..|.++|-||||||.+++.+-..+.   ..+.++.-.++++++-.+.+-          +.|+.      -..+...|. 
T Consensus       423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~  502 (767)
T KOG1514|consen  423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV  502 (767)
T ss_pred             eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence            3688999999999999999988776   334455558889988775432          23431      112223333 


Q ss_pred             ---HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc--CCcEEEEE-ecCchhHHHHHhhCcccccccc-ccee
Q 013316          267 ---EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIF-AGYSEPMKRVIASNEGFCRRVT-KFFH  339 (445)
Q Consensus       267 ---~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~i~-a~~~~~~~~~~~~~~~l~~R~~-~~i~  339 (445)
                         ....+||+|||.|.|..+.|        +++-.|...-.  ..+++||+ |+|-+.-.+++  .+...+|++ ..|.
T Consensus       503 ~k~~~~~~VvLiDElD~Lvtr~Q--------dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l--~nrvsSRlg~tRi~  572 (767)
T KOG1514|consen  503 PKPKRSTTVVLIDELDILVTRSQ--------DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLL--MNRVSSRLGLTRIC  572 (767)
T ss_pred             CCCCCCCEEEEeccHHHHhcccH--------HHHHHHhcCCcCCCCceEEEEecccccCHHHHh--ccchhhhccceeee
Confidence               11348999999999998655        45444444332  35666666 55544444443  345566776 8899


Q ss_pred             CCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCC
Q 013316          340 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC  419 (445)
Q Consensus       340 ~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~  419 (445)
                      |.+|+..|+.+|+...|...            ..+..++++ +.++...   --.|.+|..-.++++|.+-...+...  
T Consensus       573 F~pYth~qLq~Ii~~RL~~~------------~~f~~~aie-lvarkVA---avSGDaRraldic~RA~Eia~~~~~~--  634 (767)
T KOG1514|consen  573 FQPYTHEQLQEIISARLKGL------------DAFENKAIE-LVARKVA---AVSGDARRALDICRRAAEIAEERNVK--  634 (767)
T ss_pred             cCCCCHHHHHHHHHHhhcch------------hhcchhHHH-HHHHHHH---hccccHHHHHHHHHHHHHHhhhhccc--
Confidence            99999999999999988764            233444544 5544441   12456677777888886655555431  


Q ss_pred             CChhhhhhccHHHHHHHHHHHH
Q 013316          420 LDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       420 ~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      .+......|+.-||.+|+.++.
T Consensus       635 ~k~~~~q~v~~~~v~~Ai~em~  656 (767)
T KOG1514|consen  635 GKLAVSQLVGILHVMEAINEML  656 (767)
T ss_pred             ccccccceeehHHHHHHHHHHh
Confidence            1334455789999999998754

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.08  E-value=1.9e-09  Score=102.24  Aligned_cols=134  Identities=18%  Similarity=0.140  Sum_probs=89.5

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC-C-----------------CCeEEeeccccccc-------------
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-T-----------------DRVTEVQRTDLVGE-------------  252 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-~-----------------~~~~~~~~~~l~~~-------------  252 (445)
                      +.+..+||+||+|+||+++|+.+|+.+.+..... .                 ..+..+.+......             
T Consensus        19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~   98 (342)
T PRK06964         19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA   98 (342)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence            4567899999999999999999999997643211 0                 01222211100000             


Q ss_pred             -ccC--------C-chhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEE
Q 013316          253 -FVG--------H-TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF  313 (445)
Q Consensus       253 -~~g--------~-~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~  313 (445)
                       --|        . .-..++.+.+..       ...|++||++|++..           .+.|.||+.+|+  ...++|+
T Consensus        99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL  167 (342)
T PRK06964         99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEPPPGTVFLL  167 (342)
T ss_pred             hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCcCcEEEE
Confidence             000        0 123444444332       347999999999987           888999999997  4566666


Q ss_pred             ecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHH
Q 013316          314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI  354 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~  354 (445)
                      .|++....     -|.++||+ +.+.|++|+.+++.+.+..
T Consensus       168 ~t~~~~~L-----LpTI~SRc-q~i~~~~~~~~~~~~~L~~  202 (342)
T PRK06964        168 VSARIDRL-----LPTILSRC-RQFPMTVPAPEAAAAWLAA  202 (342)
T ss_pred             EECChhhC-----cHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence            65543322     68899999 9999999999999888765

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.05  E-value=3.1e-09  Score=100.13  Aligned_cols=131  Identities=10%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-----------------eEEeecccccccccCCchhHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIK  266 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~g~~~~~~~~~~~  266 (445)
                      ..+...||+||+|+||+++|+.+|+.+.+...-...+                 |..+.+.  .++.+  .-..++++.+
T Consensus        22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~~   97 (325)
T PRK06871         22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREINE   97 (325)
T ss_pred             CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHHH
Confidence            3456788999999999999999999987633211111                 1112110  01111  2334555443


Q ss_pred             Hc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccc
Q 013316          267 EA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF  337 (445)
Q Consensus       267 ~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~  337 (445)
                      ..       ...|++||++|++..           .+.|.||+.+++  ...++|+.++....     .-|.++||+ +.
T Consensus        98 ~~~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEPp~~~~fiL~t~~~~~-----llpTI~SRC-~~  160 (325)
T PRK06871         98 KVSQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEEPRPNTYFLLQADLSAA-----LLPTIYSRC-QT  160 (325)
T ss_pred             HHhhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChHh-----CchHHHhhc-eE
Confidence            32       337999999999987           889999999997  45666665544322     258899999 99


Q ss_pred             eeCCCCCHHHHHHHHHHH
Q 013316          338 FHFNDFNSEELAKILHIK  355 (445)
Q Consensus       338 i~~~~~~~~~~~~il~~~  355 (445)
                      +.|++|+.++..+.+...
T Consensus       161 ~~~~~~~~~~~~~~L~~~  178 (325)
T PRK06871        161 WLIHPPEEQQALDWLQAQ  178 (325)
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            999999999998877654

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=99.03  E-value=1.5e-09  Score=96.92  Aligned_cols=78  Identities=21%  Similarity=0.317  Sum_probs=55.2

Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-cEEEEEecCchh--------HHHHHhhCcccccccccceeC
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEP--------MKRVIASNEGFCRRVTKFFHF  340 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~a~~~~~--------~~~~~~~~~~l~~R~~~~i~~  340 (445)
                      +|||||||+|.|--           +...-|-+.+++. .-++|+|+++..        ...+.-+.+.|++|+ ..|..
T Consensus       297 PGVLFIDEVhMLDi-----------EcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Iirt  364 (456)
T KOG1942|consen  297 PGVLFIDEVHMLDI-----------ECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LIIRT  364 (456)
T ss_pred             CcceEeeehhhhhh-----------HHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEEee
Confidence            48999999988754           6666777777762 335555554321        112222347788898 88899


Q ss_pred             CCCCHHHHHHHHHHHHhcc
Q 013316          341 NDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       341 ~~~~~~~~~~il~~~l~~~  359 (445)
                      -+|+.+++++|++......
T Consensus       365 ~~y~~~e~r~Ii~~Ra~~E  383 (456)
T KOG1942|consen  365 LPYDEEEIRQIIKIRAQVE  383 (456)
T ss_pred             ccCCHHHHHHHHHHHHhhh
Confidence            9999999999999887754

>PRK08116 hypothetical protein; Validated

Probab=99.03  E-value=5.3e-09  Score=96.70  Aligned_cols=127  Identities=16%  Similarity=0.148  Sum_probs=74.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccccc----CCchhHHHHHHHHc-cCcEEEEcCccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV----GHTGPKTRRRIKEA-EGGILFVDEAYR  280 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~----g~~~~~~~~~~~~a-~~~il~lDEid~  280 (445)
                      ..+++|+|+||||||.+|.+|++.+...+.    +++.++.+++...+.    +.......++++.. ...+|+|||+..
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~----~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~  189 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGV----PVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA  189 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence            357999999999999999999999876433    777788777655432    11111222333322 346999999954


Q ss_pred             cccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCccccccc---ccceeCCCCCH
Q 013316          281 LIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNS  345 (445)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~  345 (445)
                      ...      .+   ..+..|...++.   ....+|++|+..+.......++.+.+|+   ...|.|+.++.
T Consensus       190 e~~------t~---~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~  251 (268)
T PRK08116        190 ERD------TE---WAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY  251 (268)
T ss_pred             CCC------CH---HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence            322      12   233445554442   2233444555444332222367788885   34567776663

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.03  E-value=5.3e-09  Score=98.36  Aligned_cols=131  Identities=16%  Similarity=0.140  Sum_probs=85.4

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC--------------CeEEeecccccccccCC------chhHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD--------------RVTEVQRTDLVGEFVGH------TGPKTRR  263 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~g~------~~~~~~~  263 (445)
                      .-+..+||+||+|+||+++|+.+|+.+.+......+              .+..+..   ....-|.      .-..++.
T Consensus        24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~---~p~~~~~k~~~~I~idqIR~  100 (319)
T PRK08769         24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF---IPNRTGDKLRTEIVIEQVRE  100 (319)
T ss_pred             CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec---CCCcccccccccccHHHHHH
Confidence            345569999999999999999999988664311100              1111100   0000010      1223444


Q ss_pred             HHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCccccccc
Q 013316          264 RIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRV  334 (445)
Q Consensus       264 ~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~  334 (445)
                      +.+..       ...|++||++|.+..           .+.|.||+.+|+  ...++|+.++....  +   -|.++|||
T Consensus       101 l~~~~~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~~~fiL~~~~~~~--l---LpTIrSRC  164 (319)
T PRK08769        101 ISQKLALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPSPGRYLWLISAQPAR--L---PATIRSRC  164 (319)
T ss_pred             HHHHHhhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCCCCCeEEEEECChhh--C---chHHHhhh
Confidence            44322       237999999999986           788999999997  35555555443222  2   58899999


Q ss_pred             ccceeCCCCCHHHHHHHHHH
Q 013316          335 TKFFHFNDFNSEELAKILHI  354 (445)
Q Consensus       335 ~~~i~~~~~~~~~~~~il~~  354 (445)
                       ..+.|++|+.++..+.+..
T Consensus       165 -q~i~~~~~~~~~~~~~L~~  183 (319)
T PRK08769        165 -QRLEFKLPPAHEALAWLLA  183 (319)
T ss_pred             -eEeeCCCcCHHHHHHHHHH
Confidence             9999999999988777653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.02  E-value=1.4e-09  Score=90.49  Aligned_cols=124  Identities=23%  Similarity=0.258  Sum_probs=72.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--------------ccCCchhHHHHHHHHccC-
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------------FVGHTGPKTRRRIKEAEG-  270 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~g~~~~~~~~~~~~a~~-  270 (445)
                      ..+++|+||||||||++++.++..+....    ..++.++++.....              ............+..++. 
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL   77 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999887633    24667776653321              112233344455555543 


Q ss_pred             --cEEEEcCccccccCCCCCCchhHHHHHH-----HHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCC
Q 013316          271 --GILFVDEAYRLIPMQKADDKDYGIEALE-----EIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF  343 (445)
Q Consensus       271 --~il~lDEid~l~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~  343 (445)
                        .+|||||++.+......      .....     ............+|++++.....    ....++.|++..+.++.+
T Consensus        78 ~~~viiiDei~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~  147 (148)
T smart00382       78 KPDVLILDEITSLLDAEQE------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL----GPALLRRRFDRRIVLLLI  147 (148)
T ss_pred             CCCEEEEECCcccCCHHHH------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccC----chhhhhhccceEEEecCC
Confidence              99999999999863320      00000     11222223556677776641110    123344477777766544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=98.99  E-value=3.7e-09  Score=100.21  Aligned_cols=133  Identities=20%  Similarity=0.219  Sum_probs=86.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC------------------CCCeEEeecccccccccCC-----chhH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP------------------TDRVTEVQRTDLVGEFVGH-----TGPK  260 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~g~-----~~~~  260 (445)
                      +.+..+||+||+|+|||++|+.+|+.+.+.....                  ...|+.+.+..-. .--|.     .-..
T Consensus        19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~   97 (325)
T PRK08699         19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA   97 (325)
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence            4566799999999999999999999986532110                  1224444332100 00010     1234


Q ss_pred             HHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--cEEEEEecCchhHHHHHhhCcccc
Q 013316          261 TRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAGYSEPMKRVIASNEGFC  331 (445)
Q Consensus       261 ~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~i~a~~~~~~~~~~~~~~~l~  331 (445)
                      ++.+.+.+       ...|++||+++.+.+           ..++.|++.+++.  ..++|+++.....  +   -|.++
T Consensus        98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~~~~~~Ilvth~~~~--l---l~ti~  161 (325)
T PRK08699         98 VREIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPPPQVVFLLVSHAADK--V---LPTIK  161 (325)
T ss_pred             HHHHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCcCCCEEEEEeCChHh--C---hHHHH
Confidence            45554433       347999999988877           7788888888863  4555555444332  1   57789


Q ss_pred             cccccceeCCCCCHHHHHHHHHH
Q 013316          332 RRVTKFFHFNDFNSEELAKILHI  354 (445)
Q Consensus       332 ~R~~~~i~~~~~~~~~~~~il~~  354 (445)
                      +|+ ..+.|++|+.++..+.+..
T Consensus       162 SRc-~~~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        162 SRC-RKMVLPAPSHEEALAYLRE  183 (325)
T ss_pred             HHh-hhhcCCCCCHHHHHHHHHh
Confidence            998 9999999999998777653

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=98.99  E-value=1.6e-09  Score=103.33  Aligned_cols=204  Identities=19%  Similarity=0.269  Sum_probs=114.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc--------------ccccccCCchhHHHHHHHHccC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD--------------LVGEFVGHTGPKTRRRIKEAEG  270 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~g~~~~~~~~~~~~a~~  270 (445)
                      ...|+||.|.||||||.+.+.+++...+        -+.++...              ..++|+-+.     ..+-.|.+
T Consensus        56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr--------~v~~~g~~~s~~gLta~~~~d~~~~~~~lea-----Galvlad~  122 (331)
T PF00493_consen   56 GNIHILLVGDPGTGKSQLLKYVAKLAPR--------SVYTSGKGSSAAGLTASVSRDPVTGEWVLEA-----GALVLADG  122 (331)
T ss_dssp             -S--EEEECSCHHCHHHHHHCCCCT-SS--------EEEEECCGSTCCCCCEEECCCGGTSSECEEE------HHHHCTT
T ss_pred             cccceeeccchhhhHHHHHHHHHhhCCc--------eEEECCCCcccCCccceeccccccceeEEeC-----CchhcccC
Confidence            4569999999999999999988766532        11122111              111111111     35667899


Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchhHH--------HHHhhC
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMK--------RVIASN  327 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~--------~~~~~~  327 (445)
                      ||.+|||+|.+..           +....|.+.|+.+.               ..|++++++..-.        .-+...
T Consensus       123 GiccIDe~dk~~~-----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~  191 (331)
T PF00493_consen  123 GICCIDEFDKMKE-----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLP  191 (331)
T ss_dssp             SEEEECTTTT--C-----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-
T ss_pred             ceeeecccccccc-----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccc
Confidence            9999999999876           55678888888743               2566665544311        011235


Q ss_pred             ccccccccccee-CCCCCHHHHHHHHHHHHhcccccc-------cc---------------cc-cccCCcccHHHHHHHH
Q 013316          328 EGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTEDS-------LL---------------YG-FKLHSSCSMDAIAALI  383 (445)
Q Consensus       328 ~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~~~-------~~---------------~~-~~~~~~~~~~~l~~~~  383 (445)
                      ++|++|||..+. ...++.+.=..+.++.++......       ..               +. -.+.|.+++++...+.
T Consensus       192 ~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~  271 (331)
T PF00493_consen  192 PPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELII  271 (331)
T ss_dssp             CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHH
T ss_pred             hhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence            889999997764 566776666667777666553321       00               00 1456677777755444


Q ss_pred             HHHHHH-------hhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          384 EKETTE-------KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       384 ~~~~~~-------~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      ..|..-       ....+...|.++.++.-+...+..++.         ..|+.+|+..|+.-+.
T Consensus       272 ~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr---------~~V~~~Dv~~Ai~L~~  327 (331)
T PF00493_consen  272 NYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLR---------DEVTEEDVEEAIRLFE  327 (331)
T ss_dssp             HHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTS---------SECSHHHHHHHHHHHH
T ss_pred             HHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhcc---------CceeHHHHHHHHHHHH
Confidence            444311       112356688999998877655555442         2799999999998654

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=98.98  E-value=2.2e-09  Score=108.88  Aligned_cols=200  Identities=18%  Similarity=0.163  Sum_probs=121.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCc--------hh--HHHHHHHHccCcEEEE
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT--------GP--KTRRRIKEAEGGILFV  275 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~--------~~--~~~~~~~~a~~~il~l  275 (445)
                      ..+|+|.|++||+|++++|+++..+..     ..||+.+..+.-...++|..        +.  --..++..|.+|||||
T Consensus        25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l   99 (584)
T PRK13406         25 LGGVVLRARAGPVRDRWLAALRALLPA-----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVL   99 (584)
T ss_pred             cceEEEEcCCCcHHHHHHHHHHHhcCC-----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence            368999999999999999999998753     23787777776556666642        01  1134678889999999


Q ss_pred             cCccccccCCCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeC
Q 013316          276 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF  340 (445)
Q Consensus       276 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~  340 (445)
                      ||+..+.+           .+++.|++.|+.+.               +++|++  .+.........+++++||+..+.+
T Consensus       100 De~n~~~~-----------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat--~~~~~~~~~L~~~lLDRf~l~v~v  166 (584)
T PRK13406        100 AMAERLEP-----------GTAARLAAALDTGEVRLERDGLALRLPARFGLVAL--DEGAEEDERAPAALADRLAFHLDL  166 (584)
T ss_pred             cCcccCCH-----------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec--CCChhcccCCCHHhHhheEEEEEc
Confidence            99966655           89999999999864               344554  222222233467899999999999


Q ss_pred             CCCCHHHHHHHH--HHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccC
Q 013316          341 NDFNSEELAKIL--HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD  418 (445)
Q Consensus       341 ~~~~~~~~~~il--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~  418 (445)
                      +.++..+..+-.  ...+......+.      ...++.+.+..++.-....  . .-..|-...++.-|....++     
T Consensus       167 ~~~~~~~~~~~~~~~~~I~~AR~rl~------~v~v~~~~l~~i~~~~~~~--g-v~S~Ra~i~llraARa~AaL-----  232 (584)
T PRK13406        167 DGLALRDAREIPIDADDIAAARARLP------AVGPPPEAIAALCAAAAAL--G-IASLRAPLLALRAARAAAAL-----  232 (584)
T ss_pred             CCCChHHhcccCCCHHHHHHHHHHHc------cCCCCHHHHHHHHHHHHHh--C-CCCcCHHHHHHHHHHHHHHH-----
Confidence            999866543100  000110000111      2344555555444222210  0 00234444444444222222     


Q ss_pred             CCChhhhhhccHHHHHHHHHHHH
Q 013316          419 CLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       419 ~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                          ++...|+.+||.+++.-+.
T Consensus       233 ----~Gr~~V~~~dv~~Aa~lvL  251 (584)
T PRK13406        233 ----AGRTAVEEEDLALAARLVL  251 (584)
T ss_pred             ----cCCCCCCHHHHHHHHHHHH
Confidence                3445899999999987543

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=1.5e-08  Score=96.42  Aligned_cols=165  Identities=17%  Similarity=0.233  Sum_probs=104.6

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      +.|.+.-+..+++|+...            +....+..+.+.|.||||||.+-..+-.......  .....+.++|..+-
T Consensus       152 l~gRe~e~~~v~~F~~~h------------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~--~~~~~v~inc~sl~  217 (529)
T KOG2227|consen  152 LKGRELEMDIVREFFSLH------------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS--KSPVTVYINCTSLT  217 (529)
T ss_pred             ccchHHHHHHHHHHHHhh------------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc--ccceeEEEeecccc
Confidence            788888888888876544            3456778899999999999988765554443321  12245778887532


Q ss_pred             c----------cc----cCC-chhHHHHHHHHc----c-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhh--ccCCc
Q 013316          251 G----------EF----VGH-TGPKTRRRIKEA----E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV--MDGGK  308 (445)
Q Consensus       251 ~----------~~----~g~-~~~~~~~~~~~a----~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~--~~~~~  308 (445)
                      .          .+    .|. ++......|+.-    . --++++||+|.|..+.+        .++-.|..+  +-..+
T Consensus       218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--------~vLy~lFewp~lp~sr  289 (529)
T KOG2227|consen  218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--------TVLYTLFEWPKLPNSR  289 (529)
T ss_pred             chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------ceeeeehhcccCCcce
Confidence            1          11    121 333333344332    2 36999999999996544        222222211  11244


Q ss_pred             EEEEE-ecCchhHHHHHhhCccccccc---ccceeCCCCCHHHHHHHHHHHHhccc
Q 013316          309 VVVIF-AGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       309 ~~~i~-a~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                      +++|+ |+.-+.++++   -|.|..|.   +..+.|++|+.+|+.+|+...++...
T Consensus       290 ~iLiGiANslDlTdR~---LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~  342 (529)
T KOG2227|consen  290 IILIGIANSLDLTDRF---LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES  342 (529)
T ss_pred             eeeeeehhhhhHHHHH---hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence            55554 6566666665   35555543   58899999999999999999998863

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=1.1e-09  Score=104.11  Aligned_cols=89  Identities=25%  Similarity=0.261  Sum_probs=79.5

Q ss_pred             HHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCC
Q 013316           52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGS  131 (445)
Q Consensus        52 Lh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~  131 (445)
                      |.=|+..|.+++|+-.+..    -.|+...+..|-|+||-|+..||.++|++|+++|+++|+.|.+||||| |+|+..++
T Consensus       554 LLDaaLeGEldlVq~~i~e----v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPL-HCAASCNn  628 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE----VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPL-HCAASCNN  628 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh----hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchh-hhhhhcCc
Confidence            4458899999999988753    346777889999999999999999999999999999999999999999 88999999


Q ss_pred             hHHHHHHHhhhhhH
Q 013316          132 AKLRELLLWHSEEQ  145 (445)
Q Consensus       132 ~~i~~~ll~~~~~~  145 (445)
                      ..+++.|.+.|+-.
T Consensus       629 v~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  629 VPMCKQLVESGAAV  642 (752)
T ss_pred             hHHHHHHHhccceE
Confidence            99999999988654

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=98.96  E-value=8.1e-09  Score=98.30  Aligned_cols=131  Identities=11%  Similarity=0.055  Sum_probs=86.6

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccCCchhHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIK  266 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~  266 (445)
                      +.+...||+||+|+||+++|+++|+.+-+......                 ..+..+.+..- +..  -.-..++.+.+
T Consensus        22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~   98 (334)
T PRK07993         22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTE   98 (334)
T ss_pred             CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHH
Confidence            45667889999999999999999999866321111                 11111211100 000  02234454443


Q ss_pred             Hc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccc
Q 013316          267 EA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF  337 (445)
Q Consensus       267 ~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~  337 (445)
                      ..       ...|++||++|++..           ++.|.||+.+|+  ...++|+.+....-     .-|.++||+ +.
T Consensus        99 ~~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~-----lLpTIrSRC-q~  161 (334)
T PRK07993         99 KLYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEPPENTWFFLACREPAR-----LLATLRSRC-RL  161 (334)
T ss_pred             HHhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhh-----ChHHHHhcc-cc
Confidence            32       347999999999987           888999999997  45555555443222     157899999 78


Q ss_pred             eeCCCCCHHHHHHHHHH
Q 013316          338 FHFNDFNSEELAKILHI  354 (445)
Q Consensus       338 i~~~~~~~~~~~~il~~  354 (445)
                      +.|++|+.++..+.+..
T Consensus       162 ~~~~~~~~~~~~~~L~~  178 (334)
T PRK07993        162 HYLAPPPEQYALTWLSR  178 (334)
T ss_pred             ccCCCCCHHHHHHHHHH
Confidence            99999999998877653

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=98.94  E-value=1e-08  Score=104.23  Aligned_cols=235  Identities=20%  Similarity=0.260  Sum_probs=137.3

Q ss_pred             HhhhcchHHHHHHHH-HHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          169 SNIVGLHELKIQLRK-WAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      ..|.|.+.+|..|.= ++..+     .+...-....+...||||.|.||||||.+-+.+++.+.+.      -+..-.+|
T Consensus       286 PsIyG~e~VKkAilLqLfgGv-----~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~------vytsgkgs  354 (682)
T COG1241         286 PSIYGHEDVKKAILLQLFGGV-----KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG------VYTSGKGS  354 (682)
T ss_pred             ccccCcHHHHHHHHHHhcCCC-----cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce------EEEccccc
Confidence            347888887766542 11111     1111111112234699999999999999999999877541      11111111


Q ss_pred             c---c---------cccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcE------
Q 013316          248 D---L---------VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV------  309 (445)
Q Consensus       248 ~---l---------~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~------  309 (445)
                      .   |         .++|+=+.     ..+-.|.+||..|||+|++..           .....+...|+...+      
T Consensus       355 s~~GLTAav~rd~~tge~~Lea-----GALVlAD~Gv~cIDEfdKm~~-----------~dr~aihEaMEQQtIsIaKAG  418 (682)
T COG1241         355 SAAGLTAAVVRDKVTGEWVLEA-----GALVLADGGVCCIDEFDKMNE-----------EDRVAIHEAMEQQTISIAKAG  418 (682)
T ss_pred             cccCceeEEEEccCCCeEEEeC-----CEEEEecCCEEEEEeccCCCh-----------HHHHHHHHHHHhcEeeecccc
Confidence            1   1         11111111     133457889999999988865           445677777775332      


Q ss_pred             ---------EEEEecCchh--------HHHHHhhCcccccccccce-eCCCCCHHHHHHHHHHHHhccccc---------
Q 013316          310 ---------VVIFAGYSEP--------MKRVIASNEGFCRRVTKFF-HFNDFNSEELAKILHIKMNNQTED---------  362 (445)
Q Consensus       310 ---------~~i~a~~~~~--------~~~~~~~~~~l~~R~~~~i-~~~~~~~~~~~~il~~~l~~~~~~---------  362 (445)
                               -+++|.|+..        ...-+...++|++|||..+ ....|+++.=..|.++.+......         
T Consensus       419 I~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~  498 (682)
T COG1241         419 ITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLD  498 (682)
T ss_pred             eeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccc
Confidence                     2233333221        1122334588999999665 667777766666777666654211         


Q ss_pred             ------------ccc---cccc-cCCcccHHHHHHHHHHHHHHhhh-----------cccCchhhHHHHHHHHHhhhhhh
Q 013316          363 ------------SLL---YGFK-LHSSCSMDAIAALIEKETTEKQR-----------REMNGGLVDPMLVNARENLDLRL  415 (445)
Q Consensus       363 ------------~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~-----------~~~n~r~l~~~~~~~~~~~~~~~  415 (445)
                                  +.+   |.-. ..|.++.++.+.+...|.+  +|           .|..+|+|..++.-+...+..|+
T Consensus       499 ~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~--~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rL  576 (682)
T COG1241         499 GVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVE--MRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRL  576 (682)
T ss_pred             cccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHH--hhhccccccccCcccccHHHHHHHHHHHHHHHhhhc
Confidence                        111   1111 4477888887766655542  33           24668899999887766555554


Q ss_pred             ccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          416 SFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       416 ~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      +         ..|+.+|+.+|+.-+.
T Consensus       577 S---------~~V~~eD~~eAi~lv~  593 (682)
T COG1241         577 S---------DVVEEEDVDEAIRLVD  593 (682)
T ss_pred             c---------CCCCHHHHHHHHHHHH
Confidence            2         2699999999998654

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.94  E-value=1.3e-08  Score=95.73  Aligned_cols=131  Identities=11%  Similarity=0.150  Sum_probs=86.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC----------------CCCeEEeecccccccccCCchhHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE  267 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~  267 (445)
                      ..+..+||+||.|+||+++|+.+|+.+-+...-.                ...|..+.+.. .++.+  .-..++.+.+.
T Consensus        23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~   99 (319)
T PRK06090         23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL   99 (319)
T ss_pred             CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence            4566799999999999999999999986643110                00122222110 00001  12334443332


Q ss_pred             c-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccce
Q 013316          268 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF  338 (445)
Q Consensus       268 a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i  338 (445)
                      .       ...|++||++|++..           .+.|.||+.+|+  .+.++|+.++.....     -|.++||+ +.+
T Consensus       100 ~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l-----LpTI~SRC-q~~  162 (319)
T PRK06090        100 AQESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEPAPNCLFLLVTHNQKRL-----LPTIVSRC-QQW  162 (319)
T ss_pred             HhhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC-----hHHHHhcc-eeE
Confidence            2       247999999999986           788999999997  445666654442221     57899999 899


Q ss_pred             eCCCCCHHHHHHHHHH
Q 013316          339 HFNDFNSEELAKILHI  354 (445)
Q Consensus       339 ~~~~~~~~~~~~il~~  354 (445)
                      .|++|+.++..+.+..
T Consensus       163 ~~~~~~~~~~~~~L~~  178 (319)
T PRK06090        163 VVTPPSTAQAMQWLKG  178 (319)
T ss_pred             eCCCCCHHHHHHHHHH
Confidence            9999999998877653

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=9e-09  Score=99.02  Aligned_cols=135  Identities=16%  Similarity=0.282  Sum_probs=94.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCch----hHHHHHHHHccC---cEEEEcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEAEG---GILFVDE  277 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~----~~~~~~~~~a~~---~il~lDE  277 (445)
                      +...+||.||||+|||++|-.+|..+.-       ||+.+-.+.-   .+|.++    ..+.++|+.|-.   +||++|+
T Consensus       537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~F-------PFvKiiSpe~---miG~sEsaKc~~i~k~F~DAYkS~lsiivvDd  606 (744)
T KOG0741|consen  537 PLVSVLLEGPPGSGKTALAAKIALSSDF-------PFVKIISPED---MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDD  606 (744)
T ss_pred             cceEEEEecCCCCChHHHHHHHHhhcCC-------CeEEEeChHH---ccCccHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence            4557999999999999999999988776       8888655432   334433    346788988743   8999999


Q ss_pred             ccccccCCCCCCchhHHHHHHHHHhhccC----C-cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCH-HHHHHH
Q 013316          278 AYRLIPMQKADDKDYGIEALEEIMSVMDG----G-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKI  351 (445)
Q Consensus       278 id~l~~~~~~~~~~~~~~~~~~ll~~~~~----~-~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~i  351 (445)
                      |++|..--. -++.++.-++..|+-++..    + ++.++++|+......    .-.+...|+..+.+|..+. ++..++
T Consensus       607 iErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~----~m~i~~~F~~~i~Vpnl~~~~~~~~v  681 (744)
T KOG0741|consen  607 IERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ----EMGILDCFSSTIHVPNLTTGEQLLEV  681 (744)
T ss_pred             hhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH----HcCHHHhhhheeecCccCchHHHHHH
Confidence            999974211 1244555666677766653    3 445555544443332    4567889999999999985 787777


Q ss_pred             HHH
Q 013316          352 LHI  354 (445)
Q Consensus       352 l~~  354 (445)
                      ++.
T Consensus       682 l~~  684 (744)
T KOG0741|consen  682 LEE  684 (744)
T ss_pred             HHH
Confidence            764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.93  E-value=6.9e-10  Score=113.73  Aligned_cols=136  Identities=23%  Similarity=0.291  Sum_probs=121.1

Q ss_pred             ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc-ccCCC
Q 013316            7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMYG   85 (445)
Q Consensus         7 ~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~-~d~~g   85 (445)
                      +-......|+|-.||..||.+.++.++ ..|.++..+|. .|.+||.+|+..||..+|+.|++.    .++++. .|..+
T Consensus       751 ~~Te~n~~t~LT~acaggh~e~vellv-~rganiehrdk-kgf~plImaatagh~tvV~~llk~----ha~veaQsdrtk  824 (2131)
T KOG4369|consen  751 PLTEPNIKTNLTSACAGGHREEVELLV-VRGANIEHRDK-KGFVPLIMAATAGHITVVQDLLKA----HADVEAQSDRTK  824 (2131)
T ss_pred             cccCccccccccccccCccHHHHHHHH-Hhccccccccc-ccchhhhhhcccCchHHHHHHHhh----hhhhhhhccccc
Confidence            334456789999999999999998666 56899999997 799999999999999999999985    678865 57889


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316           86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus        86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~  149 (445)
                      .|+|.+||..|..++|++||.+|++-..++-...||| .++...++.+++.+|+++|...+-|.
T Consensus       825 dt~lSlacsggr~~vvelLl~~gankehrnvsDytPl-sla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPL-SLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhccccccchhhcCch-hhhcCcchHHHHHHHhhccccccccc
Confidence            9999999999999999999999999999999999999 78888999999999999998776664

>PRK12377 putative replication protein; Provisional

Probab=98.88  E-value=1.3e-08  Score=92.42  Aligned_cols=73  Identities=26%  Similarity=0.368  Sum_probs=49.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC--chhHHHHHHHHc-cCcEEEEcCccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH--TGPKTRRRIKEA-EGGILFVDEAYRLI  282 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~a-~~~il~lDEid~l~  282 (445)
                      ..+++|+||||||||.+|.+|++.+...+.    .+..++.+++...+-..  ......+.++.. ...+|+|||+....
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~----~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~  176 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR----SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR  176 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence            358999999999999999999999976443    56777777765543210  011112334333 44799999996654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.88  E-value=7.9e-09  Score=91.49  Aligned_cols=124  Identities=22%  Similarity=0.236  Sum_probs=104.0

Q ss_pred             CChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc-cccCCCChhhhhh
Q 013316           48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANEGKTPLDHLS  126 (445)
Q Consensus        48 g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~-~~~~g~tpl~~~a  126 (445)
                      -..||.-+...|..+-...||+-    --++|.+|..|.+||..|+..|+.++++.|++.|+|+|. ++..+.||| +.|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~----vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpL-mFA   86 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST----VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPL-MFA   86 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH----hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHH-HHH
Confidence            45788888888999988888872    345899999999999999999999999999999999996 467899999 777


Q ss_pred             cCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHHHHHhhhcchHHHHHHHHHHH
Q 013316          127 NGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAK  186 (445)
Q Consensus       127 ~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~g~~~~~~~l~~~~~  186 (445)
                      +-.|+.++.++|+..|+.+...+..+.+.          ..+..++|+.+....|...+.
T Consensus        87 ALSGn~dvcrllldaGa~~~~vNsvgrTA----------aqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARMYLVNSVGRTA----------AQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             HHcCCchHHHHHHhccCccccccchhhhH----------HHHHHHhcchHHHHHHhcccc
Confidence            77889999999999999887777655332          356679999999888877543

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=2.6e-08  Score=103.57  Aligned_cols=150  Identities=21%  Similarity=0.241  Sum_probs=116.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEEeeccccc--ccccCCchhHHHHHHHHc----cCcEEEE
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTEVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFV  275 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~~~~~~l~--~~~~g~~~~~~~~~~~~a----~~~il~l  275 (445)
                      ...+-+|.|+||+|||.++.-+++....-.   .+....++.++...+.  .++.|+.+.++..+++++    .+.||||
T Consensus       207 tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfi  286 (898)
T KOG1051|consen  207 TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFL  286 (898)
T ss_pred             CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            346889999999999999999999886522   2334456666665443  336677788888888754    3479999


Q ss_pred             cCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316          276 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK  355 (445)
Q Consensus       276 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~  355 (445)
                      ||++-+...+..   +....+.+.|...+..+.+.+|+|||...+...+..+|+|.+|| ..+.++.|+.++...|+...
T Consensus       287 gelh~lvg~g~~---~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l  362 (898)
T KOG1051|consen  287 GELHWLVGSGSN---YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLILPGL  362 (898)
T ss_pred             cceeeeecCCCc---chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhhhhhh
Confidence            999999986553   22556777788888888899999999999999999999999999 88889999988888888764


Q ss_pred             Hhc
Q 013316          356 MNN  358 (445)
Q Consensus       356 l~~  358 (445)
                      -.+
T Consensus       363 ~~~  365 (898)
T KOG1051|consen  363 SER  365 (898)
T ss_pred             hhh
Confidence            433

>PF13173 AAA_14: AAA domain

Probab=98.86  E-value=1.6e-08  Score=82.90  Aligned_cols=120  Identities=19%  Similarity=0.263  Sum_probs=73.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCcccccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIP  283 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~  283 (445)
                      ..++++||.|||||++++.+++.+.     ....++.++..+......... . +.+.+.+.   ...+||||||+.+. 
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~~-   74 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYLP-   74 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhhc-
Confidence            4688999999999999999998775     122677777766432110000 0 22333222   56899999998774 


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCC-cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHH
Q 013316          284 MQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE  347 (445)
Q Consensus       284 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~  347 (445)
                                 .....+....+.+ ++.+|++++......- .....+..|. ..+++.+++-.|
T Consensus        75 -----------~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~-~~~~l~Plsf~E  126 (128)
T PF13173_consen   75 -----------DWEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRV-IEIELYPLSFRE  126 (128)
T ss_pred             -----------cHHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeE-EEEEECCCCHHH
Confidence                       2333333444443 5666666665444321 2346677787 578888888666

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.84  E-value=2.3e-08  Score=90.59  Aligned_cols=73  Identities=21%  Similarity=0.325  Sum_probs=50.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC---CchhHHHHHHHHc-cCcEEEEcCcccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRL  281 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g---~~~~~~~~~~~~a-~~~il~lDEid~l  281 (445)
                      ..+++|+|+||||||++|.+|+..+...+.    .+..++.+++...+.+   .......++++.. ...+|+|||++..
T Consensus        99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~----~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~  174 (244)
T PRK07952         99 IASFIFSGKPGTGKNHLAAAICNELLLRGK----SVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ  174 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcCC----eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence            358999999999999999999999876443    6777777777654322   1111122333333 4579999999776


Q ss_pred             c
Q 013316          282 I  282 (445)
Q Consensus       282 ~  282 (445)
                      .
T Consensus       175 ~  175 (244)
T PRK07952        175 T  175 (244)
T ss_pred             C
Confidence            5

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.81  E-value=3.1e-09  Score=109.05  Aligned_cols=140  Identities=21%  Similarity=0.274  Sum_probs=121.5

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      +|++.-.++ .|.+||..|+..||..+|..||.. .+++....+..+.|+|.+||..|.+++|++||..    |++-..+
T Consensus       779 rganiehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~----gankehr  853 (2131)
T KOG4369|consen  779 RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA----GANKEHR  853 (2131)
T ss_pred             hcccccccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcccccCceEEEecCCCcchHHHHHHHh----hcccccc
Confidence            455555555 699999999999999999888865 5677777666789999999999999999999995    7777777


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc--cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~--~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      +-...|||.+|...|..+++.+|+.+|+.|+.+.  +.|-.|| .++..+++.....+|+..+.+.+..
T Consensus       854 nvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPL-mlatmngh~~at~~ll~~gsdiNaq  921 (2131)
T KOG4369|consen  854 NVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPL-MLATMNGHQAATLSLLQPGSDINAQ  921 (2131)
T ss_pred             chhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchh-hhhhhccccHHHHHHhcccchhccc
Confidence            8888999999999999999999999999998764  6789999 9999999999999999998876654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.77  E-value=6.4e-09  Score=97.90  Aligned_cols=89  Identities=22%  Similarity=0.234  Sum_probs=49.4

Q ss_pred             CChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhh
Q 013316           48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLS  126 (445)
Q Consensus        48 g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a  126 (445)
                      +.-++.+|+..|++..++-+.-    .|.|++.+|.+.+|+||+||..|+.+++++|++ .+.+++.+|.||+||| --|
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPl-DdA  580 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPL-DDA  580 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcc-hHh
Confidence            3445555666665555443322    155555666666666666666666666666654 4555566666666666 345


Q ss_pred             cCCCChHHHHHHHhh
Q 013316          127 NGPGSAKLRELLLWH  141 (445)
Q Consensus       127 ~~~~~~~i~~~ll~~  141 (445)
                      ...++.+++++|.+.
T Consensus       581 ~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhcCcHHHHHHHHHH
Confidence            555555665555443

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.75  E-value=2e-07  Score=84.75  Aligned_cols=150  Identities=17%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE----eecc---cc-------------ccc-ccC--------
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE----VQRT---DL-------------VGE-FVG--------  255 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~----~~~~---~l-------------~~~-~~g--------  255 (445)
                      +...++++||.|+|||++.+.+...+...+..  ..++.    ...+   .+             .+. ..+        
T Consensus        19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   96 (234)
T PF01637_consen   19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYK--VVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK   96 (234)
T ss_dssp             -SSEEEEEESTTSSHHHHHHHHHHHCT--EEC--CCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred             cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc--EEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence            46789999999999999999999877331110  00000    0000   00             000 000        


Q ss_pred             ----CchhHHHHHHHHc----cCcEEEEcCccccc-cCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHH-HHHh
Q 013316          256 ----HTGPKTRRRIKEA----EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK-RVIA  325 (445)
Q Consensus       256 ----~~~~~~~~~~~~a----~~~il~lDEid~l~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~-~~~~  325 (445)
                          .....+..+++..    ...||+|||++.+. ....  ........++.+-.......+.+|++++...+. .+..
T Consensus        97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~  174 (234)
T PF01637_consen   97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLD  174 (234)
T ss_dssp             TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-
T ss_pred             cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhc
Confidence                0122233333222    34899999999999 3221  122222333333332334556555655544333 3344


Q ss_pred             hCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          326 SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       326 ~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      ..+++..|+.. +.+++++.++..+++.....+.
T Consensus       175 ~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~  207 (234)
T PF01637_consen  175 DKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL  207 (234)
T ss_dssp             TTSTTTT---E-EEE----HHHHHHHHHHHHHCC
T ss_pred             ccCccccccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence            56778888866 9999999999999999877653

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF13606 Ank_3: Ankyrin repeat

Probab=98.74  E-value=1.4e-08  Score=59.62  Aligned_cols=29  Identities=55%  Similarity=0.785  Sum_probs=19.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCc
Q 013316           84 YGETPLHMAAKNGCNEAAKLLLAHGAFIE  112 (445)
Q Consensus        84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~  112 (445)
                      +|+||||+|+..|+.+++++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36666666666666666666666666665

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.73  E-value=1.4e-07  Score=89.41  Aligned_cols=124  Identities=16%  Similarity=0.252  Sum_probs=70.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC---CchhHHHHHHHHc-cCcEEEEcCccccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRLI  282 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g---~~~~~~~~~~~~a-~~~il~lDEid~l~  282 (445)
                      .+++|+||||||||.+|.+||+++-..+.    .++.++..++...+..   .........++.. .--+|+|||+....
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~----~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~  259 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK----SVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK  259 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence            68999999999999999999999876443    6777777776554321   1111111113332 23699999997664


Q ss_pred             cCCCCCCchhHHHHHHHHHhhcc----CCcEEEEEecCchhHHHHHhhCcccccccc---cceeCCCCC
Q 013316          283 PMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRVT---KFFHFNDFN  344 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~---~~i~~~~~~  344 (445)
                      .      .+.   .++.|...++    .++-++| +|+..+.......++.+.+|+-   ..+.|...+
T Consensus       260 ~------t~~---~~~~Lf~iin~R~~~~k~tIi-TSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d  318 (329)
T PRK06835        260 I------TEF---SKSELFNLINKRLLRQKKMII-STNLSLEELLKTYSERISSRLLGNFTLLKFYGED  318 (329)
T ss_pred             C------CHH---HHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence            3      222   2233444443    3444444 4443332221223566777762   334554433

>PRK08181 transposase; Validated

Probab=98.71  E-value=9.8e-08  Score=87.82  Aligned_cols=74  Identities=24%  Similarity=0.328  Sum_probs=51.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC-CchhHHHHHHHHc-cCcEEEEcCcccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKEA-EGGILFVDEAYRLIP  283 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~a-~~~il~lDEid~l~~  283 (445)
                      ..+++|+||||||||.+|.++++.+...+.    .++.++.+++...+.. .......+.++.. ..-+|+|||++.+..
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~----~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~  181 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGW----RVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK  181 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCC----ceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC
Confidence            458999999999999999999998866443    5667777776655321 1112223334332 447999999987765

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.68  E-value=4.6e-07  Score=81.57  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=75.6

Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH-------HHHhhCcccccccccceeCC
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK-------RVIASNEGFCRRVTKFFHFN  341 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~-------~~~~~~~~l~~R~~~~i~~~  341 (445)
                      +|||||||+|.|--           +...-|-+.+++ -..++|+||+.-...       .+.-+.-.|+.|+ ..|...
T Consensus       289 pGVLFIDEvHMLDI-----------EcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~t~  356 (454)
T KOG2680|consen  289 PGVLFIDEVHMLDI-----------ECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIISTQ  356 (454)
T ss_pred             cceEEEeeehhhhh-----------HHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heeecc
Confidence            48899999877753           444445555554 334555555433211       0101113366676 778999


Q ss_pred             CCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCC
Q 013316          342 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLD  421 (445)
Q Consensus       342 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~  421 (445)
                      +|+.+|+.+||+..+.+..           ....++++.-+..-...      -..|...+++..+...+..|-      
T Consensus       357 py~~~d~~~IL~iRc~EEd-----------v~m~~~A~d~Lt~i~~~------tsLRYai~Lit~a~~~~~krk------  413 (454)
T KOG2680|consen  357 PYTEEDIKKILRIRCQEED-----------VEMNPDALDLLTKIGEA------TSLRYAIHLITAASLVCLKRK------  413 (454)
T ss_pred             cCcHHHHHHHHHhhhhhhc-----------cccCHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHhc------
Confidence            9999999999999988752           34455676644432222      224444555554422222221      


Q ss_pred             hhhhhhccHHHHHHHHHHH
Q 013316          422 TDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       422 ~~~~~~i~~~d~~~a~~~~  440 (445)
                         -..+..+|++.+..-|
T Consensus       414 ---~~~v~~~di~r~y~LF  429 (454)
T KOG2680|consen  414 ---GKVVEVDDIERVYRLF  429 (454)
T ss_pred             ---CceeehhHHHHHHHHH
Confidence               1257777888777644

>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]

Probab=98.68  E-value=3.8e-07  Score=90.62  Aligned_cols=208  Identities=19%  Similarity=0.259  Sum_probs=110.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc--cccC---CchhHH--HHHHHHccCcEEEEcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG--EFVG---HTGPKT--RRRIKEAEGGILFVDE  277 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~--~~~g---~~~~~~--~~~~~~a~~~il~lDE  277 (445)
                      ...||||+|.||||||-+.+.+|+.+.+ ++-.++     ..++-++  .|+-   ++.+-+  ..++-.+.+||=.|||
T Consensus       461 ~~INILL~GDPGtsKSqlLqyv~~l~pR-g~yTSG-----kGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDE  534 (804)
T KOG0478|consen  461 GDINILLVGDPGTSKSQLLQYCHRLLPR-GVYTSG-----KGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDE  534 (804)
T ss_pred             ccceEEEecCCCcCHHHHHHHHHHhCCc-ceeecC-----CccchhcceeeEEecCccceeeeecCcEEEcCCceEEchh
Confidence            3469999999999999999999998764 211111     1111111  0110   011100  1123345789999999


Q ss_pred             ccccccCCCCCCchhHHHHHHHHHhhccCC---------------cEEEEEecCchh--------HHHHHhhCccccccc
Q 013316          278 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEP--------MKRVIASNEGFCRRV  334 (445)
Q Consensus       278 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~--------~~~~~~~~~~l~~R~  334 (445)
                      +|++..           ...+.|.+.|+..               +--|+++.++..        +..=+...|.|++||
T Consensus       535 FDKM~d-----------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRF  603 (804)
T KOG0478|consen  535 FDKMSD-----------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRF  603 (804)
T ss_pred             hhhhhH-----------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhh
Confidence            999965           3345566666541               223444444211        112233459999999


Q ss_pred             ccce-eCCCCCHHHHHHHHHHHHhcccccccc----------------cc-cccCCcccHHHHHHHHHHHHHHhhhccc-
Q 013316          335 TKFF-HFNDFNSEELAKILHIKMNNQTEDSLL----------------YG-FKLHSSCSMDAIAALIEKETTEKQRREM-  395 (445)
Q Consensus       335 ~~~i-~~~~~~~~~~~~il~~~l~~~~~~~~~----------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-  395 (445)
                      |.++ -+..+|..-=+.|..|.+.-+.+....                +. -.+.+..++++...+++.+.  ++|..+ 
T Consensus       604 DLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayv--d~rk~~~  681 (804)
T KOG0478|consen  604 DLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYV--DMRKIGE  681 (804)
T ss_pred             cEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhh--hhhhhcc
Confidence            9554 888888663344555554443321000                00 12356677777777777665  344433 


Q ss_pred             -Cc------hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          396 -NG------GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       396 -n~------r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                       ++      |++..++..+......+         ....+...||++|+.-+
T Consensus       682 ~~~~itat~rQlesLiRlsEahak~r---------~s~~ve~~dV~eA~~l~  724 (804)
T KOG0478|consen  682 GAGQITATPRQLESLIRLSEAHAKMR---------LSNRVEEIDVEEAVRLL  724 (804)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhh---------cccccchhhHHHHHHHH
Confidence             22      33333333332211111         12257777888877543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.68  E-value=1.2e-08  Score=102.06  Aligned_cols=95  Identities=29%  Similarity=0.436  Sum_probs=81.7

Q ss_pred             HHHHHHhhC-CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC-CCCcHHHHHHHcCCHHHHHHHH
Q 013316           28 AFQRLLREN-PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLL  105 (445)
Q Consensus        28 ~v~~ll~~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~-~g~tpLh~A~~~g~~~~~~~Ll  105 (445)
                      -++-++.+. +.-.|..|. .|+|+||+|+..+...++++||.+    |++++.+|. .|.||||-|..+|+++|+..|+
T Consensus        32 qlk~F~~k~c~n~anikD~-~GR~alH~~~S~~k~~~l~wLlqh----Gidv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDR-YGRTALHIAVSENKNSFLRWLLQH----GIDVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHh-hccceeeeeeccchhHHHHHHHhc----CceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            345555543 334677787 699999999999999999999996    899999887 5999999999999999999999


Q ss_pred             hcCCCCcccccCCCChhhhhhc
Q 013316          106 AHGAFIEAKANEGKTPLDHLSN  127 (445)
Q Consensus       106 ~~ga~~~~~~~~g~tpl~~~a~  127 (445)
                      ++|+...++|+.|.+||++++.
T Consensus       107 ~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  107 SKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hcCCceEEecccCCCHHHHHhh
Confidence            9999999999999999966654

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=98.68  E-value=3.6e-07  Score=84.31  Aligned_cols=121  Identities=16%  Similarity=0.139  Sum_probs=77.0

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCC---------CCCCCeEEeecccccccccCCchhHHHHHHHHc------
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA------  268 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~---------~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a------  268 (445)
                      .-+...||+||+|+||+.+|..+|+.+.+...         .....+..+.+.. .+..+  .-..++.+.+..      
T Consensus        17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e   93 (290)
T PRK05917         17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE   93 (290)
T ss_pred             CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence            34667889999999999999999999876321         0011122221110 00001  122344443332      


Q ss_pred             -cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCC
Q 013316          269 -EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN  344 (445)
Q Consensus       269 -~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~  344 (445)
                       ...|++||++|++..           ++.|.||+.+++  ...++|+.+++....     -|.++||+ ..+.|+++.
T Consensus        94 ~~~kv~ii~~ad~mt~-----------~AaNaLLK~LEEPp~~~~fiL~~~~~~~l-----l~TI~SRc-q~~~~~~~~  155 (290)
T PRK05917         94 SPYKIYIIHEADRMTL-----------DAISAFLKVLEDPPQHGVIILTSAKPQRL-----PPTIRSRS-LSIHIPMEE  155 (290)
T ss_pred             CCceEEEEechhhcCH-----------HHHHHHHHHhhcCCCCeEEEEEeCChhhC-----cHHHHhcc-eEEEccchh
Confidence             337999999999987           889999999997  455555554443221     57889998 888888654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.67  E-value=3.4e-08  Score=59.74  Aligned_cols=32  Identities=53%  Similarity=0.756  Sum_probs=22.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 013316           84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA  115 (445)
Q Consensus        84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~  115 (445)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36677777777777777777777777776665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.66  E-value=5.9e-08  Score=79.82  Aligned_cols=102  Identities=25%  Similarity=0.309  Sum_probs=62.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCC-CCCCCeEEeecccccc------c---ccC------CchhHHHH----HH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPTDRVTEVQRTDLVG------E---FVG------HTGPKTRR----RI  265 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~-~~~~~~~~~~~~~l~~------~---~~g------~~~~~~~~----~~  265 (445)
                      ...++++||||+|||++++.++..+..... ....+++.++++....      .   .++      .+...+.+    .+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l   83 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL   83 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence            457899999999999999999998853100 0022566666655321      0   011      12232223    33


Q ss_pred             HHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          266 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       266 ~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ......+|+|||+|.+. +         .+.++.|...+++..+.+|.++++
T Consensus        84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHhCCCCeEEEEECh
Confidence            33334699999999984 1         277888888888888888877665

>PF05729 NACHT: NACHT domain

Probab=98.64  E-value=5.9e-07  Score=76.97  Aligned_cols=144  Identities=15%  Similarity=0.244  Sum_probs=80.2

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCC--CCeEEeeccccccc---------c---cCCchhH----HHHHHHHcc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPT--DRVTEVQRTDLVGE---------F---VGHTGPK----TRRRIKEAE  269 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~--~~~~~~~~~~l~~~---------~---~g~~~~~----~~~~~~~a~  269 (445)
                      .++++|+||+|||++++.++..+........  ..++.+.+......         +   .......    .........
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK   81 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence            4789999999999999999998876443221  12223333322111         0   0111111    122344456


Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHH
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEE  347 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~  347 (445)
                      ..+|+||-+|.+....+..........+..++..--..++.++.++++.....       +.+++.  ..+.+++++.++
T Consensus        82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~-------~~~~~~~~~~~~l~~~~~~~  154 (166)
T PF05729_consen   82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD-------LRRRLKQAQILELEPFSEED  154 (166)
T ss_pred             ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH-------HHHhcCCCcEEEECCCCHHH
Confidence            68999999999987433101111223333444331113344555544444432       222222  568999999999


Q ss_pred             HHHHHHHHHhc
Q 013316          348 LAKILHIKMNN  358 (445)
Q Consensus       348 ~~~il~~~l~~  358 (445)
                      +.++++.+++.
T Consensus       155 ~~~~~~~~f~~  165 (166)
T PF05729_consen  155 IKQYLRKYFSN  165 (166)
T ss_pred             HHHHHHHHhhc
Confidence            99999988763

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=98.64  E-value=2.8e-07  Score=83.16  Aligned_cols=124  Identities=24%  Similarity=0.400  Sum_probs=76.6

Q ss_pred             HHHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316          161 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  239 (445)
Q Consensus       161 ~~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~  239 (445)
                      .+.++..+++ |.||.-+++.|...++.....         .....|..+-|+|+|||||..+++.||+.+.+.+. .+.
T Consensus        73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n---------~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl-~S~  142 (344)
T KOG2170|consen   73 LDGLEKDLARALFGQHLAKQLVVNALKSHWAN---------PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL-RSP  142 (344)
T ss_pred             chHHHHHHHHHhhchHHHHHHHHHHHHHHhcC---------CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc-cch
Confidence            3445556655 999999998888766544211         11234455668999999999999999999987443 111


Q ss_pred             CeEEe----eccc--ccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316          240 RVTEV----QRTD--LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  305 (445)
Q Consensus       240 ~~~~~----~~~~--l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  305 (445)
                      .+..+    ++..  -+..|--+-...+++.....+.++.++||+|++.+           ..++.|-.++|
T Consensus       143 ~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~-----------gLld~lkpfLd  203 (344)
T KOG2170|consen  143 FVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP-----------GLLDVLKPFLD  203 (344)
T ss_pred             hHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH-----------hHHHHHhhhhc
Confidence            11111    1100  11111111222344455566779999999999987           67777777776

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.64  E-value=1.2e-07  Score=89.86  Aligned_cols=86  Identities=29%  Similarity=0.364  Sum_probs=62.3

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHc
Q 013316           16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN   95 (445)
Q Consensus        16 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~   95 (445)
                      .||.+++.|++++.-+||. .|+++|......|.||||+|+..|+.--+++|+-+    |+|++..|.+|.||+.+|-..
T Consensus       136 QLhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY----GAD~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY----GADPGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhhc----cCCCCCCCCCCCcHHHHHHhc
Confidence            3777777777777666664 46777777666677777777777777777777664    777777777777777777777


Q ss_pred             CCHHHHHHHHh
Q 013316           96 GCNEAAKLLLA  106 (445)
Q Consensus        96 g~~~~~~~Ll~  106 (445)
                      ||.++.+.|++
T Consensus       211 gH~~laeRl~e  221 (669)
T KOG0818|consen  211 GHHELAERLVE  221 (669)
T ss_pred             CchHHHHHHHH
Confidence            77776666655

>PRK06526 transposase; Provisional

Probab=98.63  E-value=8.5e-08  Score=87.77  Aligned_cols=75  Identities=28%  Similarity=0.337  Sum_probs=49.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC-CchhHHHHHHHH-ccCcEEEEcCccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE-AEGGILFVDEAYRLI  282 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~-a~~~il~lDEid~l~  282 (445)
                      ...+++|+||||||||.+|.+|+..+...+.    .+..++.+++...+.. .......+.+.. ....+|+|||++.+.
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~----~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~  172 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGH----RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP  172 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCC----chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence            4568999999999999999999998876443    4444555555444321 111122233333 345799999998775


Q ss_pred             c
Q 013316          283 P  283 (445)
Q Consensus       283 ~  283 (445)
                      .
T Consensus       173 ~  173 (254)
T PRK06526        173 F  173 (254)
T ss_pred             C
Confidence            4

>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]

Probab=98.59  E-value=8.8e-07  Score=87.40  Aligned_cols=243  Identities=19%  Similarity=0.256  Sum_probs=133.9

Q ss_pred             HhhhcchHHHHHHHH-HHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-------
Q 013316          169 SNIVGLHELKIQLRK-WAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-------  240 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~-------  240 (445)
                      ..|.|.+.+|.-|.= +...+     ++..+.....+...||++.|.|||||+-+.++.+..+.+. +-.++.       
T Consensus       345 PsIyGhe~VK~GilL~LfGGv-----~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~-vYtsGkaSSaAGL  418 (764)
T KOG0480|consen  345 PSIYGHELVKAGILLSLFGGV-----HKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS-VYTSGKASSAAGL  418 (764)
T ss_pred             ccccchHHHHhhHHHHHhCCc-----cccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc-eEecCcccccccc
Confidence            458888887765432 11111     1222223334556799999999999999999998876541 000111       


Q ss_pred             eEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcE-----------
Q 013316          241 VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV-----------  309 (445)
Q Consensus       241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----------  309 (445)
                      -..+....-.+.|.-+.+     .+-.|.+||=.|||+|++.-           .-+..+..+|+...|           
T Consensus       419 TaaVvkD~esgdf~iEAG-----ALmLADnGICCIDEFDKMd~-----------~dqvAihEAMEQQtISIaKAGv~aTL  482 (764)
T KOG0480|consen  419 TAAVVKDEESGDFTIEAG-----ALMLADNGICCIDEFDKMDV-----------KDQVAIHEAMEQQTISIAKAGVVATL  482 (764)
T ss_pred             eEEEEecCCCCceeeecC-----cEEEccCceEEechhcccCh-----------HhHHHHHHHHHhheehheecceEEee
Confidence            011111111111211111     33456889999999999875           234577778875322           


Q ss_pred             ----EEEEecCch--------hHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhccccccc------------
Q 013316          310 ----VVIFAGYSE--------PMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSL------------  364 (445)
Q Consensus       310 ----~~i~a~~~~--------~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~------------  364 (445)
                          -+|+|+++.        .+..=+...+++.+||| ..|-+..+++..=..|.++.++.+.....            
T Consensus       483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~  562 (764)
T KOG0480|consen  483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQ  562 (764)
T ss_pred             cchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHH
Confidence                333443321        11122233588999999 45588999877767777776654321110            


Q ss_pred             -----ccccccCCcccHHHHHHHHHHHHHHhhhc---------ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccH
Q 013316          365 -----LYGFKLHSSCSMDAIAALIEKETTEKQRR---------EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITL  430 (445)
Q Consensus       365 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  430 (445)
                           .+.-.+.|..+.++-..+.+.|-+-..+.         +...|+|+.++.-+...  .|.       +-...+|+
T Consensus       563 vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~--Ar~-------~~~devt~  633 (764)
T KOG0480|consen  563 VRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEAR--ARV-------ECRDEVTK  633 (764)
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHH--Hhh-------hhhhhccH
Confidence                 01113345555666555555444333333         55667777777644111  111       12237999


Q ss_pred             HHHHHHHHHHHh
Q 013316          431 EDLEAGLKLLLR  442 (445)
Q Consensus       431 ~d~~~a~~~~~~  442 (445)
                      +|++++++-++.
T Consensus       634 ~~v~ea~eLlk~  645 (764)
T KOG0480|consen  634 EDVEEAVELLKK  645 (764)
T ss_pred             HHHHHHHHHHHh
Confidence            999999986654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.56  E-value=1e-06  Score=88.39  Aligned_cols=200  Identities=15%  Similarity=0.212  Sum_probs=102.0

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe-ecc
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV-QRT  247 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~-~~~  247 (445)
                      ++|.-...-.++|+.|+.....           +.....-+||+||||||||++++.+|++++.       .+.+- ++.
T Consensus        19 ~eLavhkkKv~eV~~wl~~~~~-----------~~~~~~iLlLtGP~G~GKtttv~~La~elg~-------~v~Ew~np~   80 (519)
T PF03215_consen   19 DELAVHKKKVEEVRSWLEEMFS-----------GSSPKRILLLTGPSGCGKTTTVKVLAKELGF-------EVQEWINPV   80 (519)
T ss_pred             HHhhccHHHHHHHHHHHHHHhc-----------cCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------eeEEecCCC
Confidence            4455555555677777664321           1223346778999999999999999999864       11111 111


Q ss_pred             c------ccccccCC--------c-hhHHHHH-HHH--------------ccCcEEEEcCccccccCCCCCCchhHHHHH
Q 013316          248 D------LVGEFVGH--------T-GPKTRRR-IKE--------------AEGGILFVDEAYRLIPMQKADDKDYGIEAL  297 (445)
Q Consensus       248 ~------l~~~~~g~--------~-~~~~~~~-~~~--------------a~~~il~lDEid~l~~~~~~~~~~~~~~~~  297 (445)
                      .      ....+.+.        + ....... ++.              ....||+|||+=.+.-.      +. ....
T Consensus        81 ~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~-~~f~  153 (519)
T PF03215_consen   81 SFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DT-SRFR  153 (519)
T ss_pred             CccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hH-HHHH
Confidence            1      00001110        0 0001111 111              13479999999654431      11 3444


Q ss_pred             HHHHhhccC--C-cEEEEEecC--ch---hHHH----HH-hhCccccccc-ccceeCCCCCHHHHHHHHHHHHhcccccc
Q 013316          298 EEIMSVMDG--G-KVVVIFAGY--SE---PMKR----VI-ASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDS  363 (445)
Q Consensus       298 ~~ll~~~~~--~-~~~~i~a~~--~~---~~~~----~~-~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~  363 (445)
                      +.|.+.+..  . .+++|++-+  ..   ....    .. -..+.++... -..|.|.+.++.-+...|...+.++....
T Consensus       154 ~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~  233 (519)
T PF03215_consen  154 EALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS  233 (519)
T ss_pred             HHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence            445555543  2 456666521  00   0000    00 0124444432 27789999999999888888887653221


Q ss_pred             cccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          364 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      .  +....+  +...+.+.+...+.||+|.+.|.
T Consensus       234 ~--~~~~~p--~~~~~l~~I~~~s~GDIRsAIn~  263 (519)
T PF03215_consen  234 S--GKNKVP--DKQSVLDSIAESSNGDIRSAINN  263 (519)
T ss_pred             c--CCccCC--ChHHHHHHHHHhcCchHHHHHHH
Confidence            1  001111  12233335556667888877664

>PF13606 Ank_3: Ankyrin repeat

Probab=98.54  E-value=7.9e-08  Score=56.45  Aligned_cols=29  Identities=41%  Similarity=0.590  Sum_probs=24.7

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      +|+||||+||..|+.+++++|+++    |+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~----gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH----GADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc----CCCCC
Confidence            388999999999999999999985    77776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.52  E-value=2.5e-07  Score=89.10  Aligned_cols=119  Identities=29%  Similarity=0.319  Sum_probs=98.6

Q ss_pred             hHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcC
Q 013316           17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG   96 (445)
Q Consensus        17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g   96 (445)
                      +..|+..+++-.+.+.-. .|.++-.++. +-.+.||+|+..|+-++|+|+|+++.  ..-++..|..|.|+||-|+..+
T Consensus       870 il~av~~~D~~klqE~h~-~gg~ll~~~~-~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHL-NGGSLLIQGP-DHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHh-cCCceEeeCc-chhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhc
Confidence            678888888655555543 4555666665 67899999999999999999999843  2345778889999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316           97 CNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW  140 (445)
Q Consensus        97 ~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~  140 (445)
                      +-.++.+|++.||.....|..|.||- .-|...+..++..+|.+
T Consensus       946 ~r~vc~~lvdagasl~ktd~kg~tp~-eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRKTDSKGKTPQ-ERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             chHHHHHHHhcchhheecccCCCChH-HHHHhcCCchHHHHHhh
Confidence            99999999999999999999999998 67777788888888743

>PRK06921 hypothetical protein; Provisional

Probab=98.51  E-value=4e-07  Score=84.10  Aligned_cols=71  Identities=23%  Similarity=0.390  Sum_probs=45.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHc-CCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYR  280 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~-~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~  280 (445)
                      ...+++|+||||||||.+|.+|++.+... +.    .++.++..++...+... -....+.++.. .--+|+|||++.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~----~v~y~~~~~l~~~l~~~-~~~~~~~~~~~~~~dlLiIDDl~~  188 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV----PVLYFPFVEGFGDLKDD-FDLLEAKLNRMKKVEVLFIDDLFK  188 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc----eEEEEEHHHHHHHHHHH-HHHHHHHHHHhcCCCEEEEecccc
Confidence            35689999999999999999999988653 32    55666665544332110 01112222222 347999999944

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=98.51  E-value=2.8e-06  Score=79.39  Aligned_cols=128  Identities=9%  Similarity=0.074  Sum_probs=83.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCC--C--CCC--CeEEeecccccccccCCchhHHHHHHHHc--------cC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI--L--PTD--RVTEVQRTDLVGEFVGHTGPKTRRRIKEA--------EG  270 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~--~~~--~~~~~~~~~l~~~~~g~~~~~~~~~~~~a--------~~  270 (445)
                      -.+..||+|+.|+||+.+|+.+++.+.+...  .  ...  .+..++..   +.-.  .-..++.+.+..        ..
T Consensus        17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~   91 (299)
T PRK07132         17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQK   91 (299)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCc
Confidence            3445779999999999999999998844210  0  011  12222210   1000  123444443322        45


Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL  348 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~  348 (445)
                      .|++||++|.+..           .+.+.|++.+++  ...++|+.++..  ..+   -|.+++|+ +++.|++++.+++
T Consensus        92 KvvII~~~e~m~~-----------~a~NaLLK~LEEPp~~t~~il~~~~~--~kl---l~TI~SRc-~~~~f~~l~~~~l  154 (299)
T PRK07132         92 KILIIKNIEKTSN-----------SLLNALLKTIEEPPKDTYFLLTTKNI--NKV---LPTIVSRC-QVFNVKEPDQQKI  154 (299)
T ss_pred             eEEEEecccccCH-----------HHHHHHHHHhhCCCCCeEEEEEeCCh--HhC---hHHHHhCe-EEEECCCCCHHHH
Confidence            8999999988865           788999999987  445555554432  222   57789998 9999999999998


Q ss_pred             HHHHHH
Q 013316          349 AKILHI  354 (445)
Q Consensus       349 ~~il~~  354 (445)
                      .+.+..
T Consensus       155 ~~~l~~  160 (299)
T PRK07132        155 LAKLLS  160 (299)
T ss_pred             HHHHHH
Confidence            877654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.50  E-value=1.1e-07  Score=89.88  Aligned_cols=91  Identities=31%  Similarity=0.367  Sum_probs=83.1

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .+..++++|++.|++..+++++.. +.+++.+| |+.+|+||+||..|+.+++++|++.   .+.+++.+|.||+|||--
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~D-yD~RTaLHvAAaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQ-GMDLETKD-YDDRTALHVAAAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHh-cccccccc-cccchhheeecccCceeHHHHHHHH---HcCCCChhhccCCCcchH
Confidence            456789999999999999999864 78999998 5899999999999999999999986   577889999999999999


Q ss_pred             HHHcCCHHHHHHHHhc
Q 013316           92 AAKNGCNEAAKLLLAH  107 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~  107 (445)
                      |...+|.+++++|-+.
T Consensus       580 A~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhcCcHHHHHHHHHH
Confidence            9999999999999875

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.50  E-value=4.9e-07  Score=85.87  Aligned_cols=87  Identities=32%  Similarity=0.329  Sum_probs=76.6

Q ss_pred             HHHHHHhCCcHHHHHHhhcCCCCCCcccccccC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCC
Q 013316           51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP  129 (445)
Q Consensus        51 pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~-~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~  129 (445)
                      -||..++.|+.+..--||..    |+++|..+. .|.||||+|++.|+..-+++|+-+|||+++.|.+|.||+ .+|...
T Consensus       136 QLhasvRt~nlet~LRll~l----GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~-~~AR~~  210 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSL----GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPV-DYARQG  210 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHc----ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHH-HHHHhc
Confidence            48999999999988777775    888887554 599999999999999999999999999999999999999 778888


Q ss_pred             CChHHHHHHHhhh
Q 013316          130 GSAKLRELLLWHS  142 (445)
Q Consensus       130 ~~~~i~~~ll~~~  142 (445)
                      ++.++.+-|.+..
T Consensus       211 gH~~laeRl~e~~  223 (669)
T KOG0818|consen  211 GHHELAERLVEIQ  223 (669)
T ss_pred             CchHHHHHHHHHH
Confidence            9888888776554

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.49  E-value=2.8e-07  Score=79.84  Aligned_cols=73  Identities=22%  Similarity=0.281  Sum_probs=48.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-chhHHHHHHHHc-cCcEEEEcCcccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRL  281 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a-~~~il~lDEid~l  281 (445)
                      ...+++|+||||||||.+|-++++.+...+.    .+..++.+++...+... ......+.+... .--+|+|||+...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~  120 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE  120 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence            4568999999999999999999998877554    67778888876654321 111122233222 3479999999543

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=98.47  E-value=1e-06  Score=79.56  Aligned_cols=121  Identities=7%  Similarity=0.011  Sum_probs=77.0

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-eEEeeccccccc------c-cCC----chhHHHHHHHH----
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-VTEVQRTDLVGE------F-VGH----TGPKTRRRIKE----  267 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~-~~~~~~~~l~~~------~-~g~----~~~~~~~~~~~----  267 (445)
                      ..+...||+||+|+||..+|.++|+.+-+...  .++ =.+.+|..+...      + +..    .-..++++.+.    
T Consensus         5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~   82 (261)
T PRK05818          5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP   82 (261)
T ss_pred             CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC
Confidence            46778999999999999999999998865321  111 011111111100      0 000    12233333321    


Q ss_pred             ----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCC
Q 013316          268 ----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN  341 (445)
Q Consensus       268 ----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~  341 (445)
                          ....|++|+++|++..           ++.|.||+.+++  .+.++|+.+++....     -|.++||+ +.+.|+
T Consensus        83 s~e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LEEPp~~t~fiLit~~~~~l-----LpTI~SRC-q~~~~~  145 (261)
T PRK05818         83 SVESNGKKIYIIYGIEKLNK-----------QSANSLLKLIEEPPKNTYGIFTTRNENNI-----LNTILSRC-VQYVVL  145 (261)
T ss_pred             chhcCCCEEEEeccHhhhCH-----------HHHHHHHHhhcCCCCCeEEEEEECChHhC-----chHhhhhe-eeeecC
Confidence                2347999999999987           888999999997  455555554433222     58899998 778898


Q ss_pred             CC
Q 013316          342 DF  343 (445)
Q Consensus       342 ~~  343 (445)
                      .+
T Consensus       146 ~~  147 (261)
T PRK05818        146 SK  147 (261)
T ss_pred             Ch
Confidence            88

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.46  E-value=2e-07  Score=56.37  Aligned_cols=33  Identities=33%  Similarity=0.487  Sum_probs=27.8

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM   83 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~   83 (445)
                      +|.||||+|+..|+.+++++|+++    |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~----ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH----GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT----TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC----cCCCCCCCC
Confidence            388999999999999999999985    888887763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.46  E-value=5.5e-07  Score=86.58  Aligned_cols=89  Identities=31%  Similarity=0.449  Sum_probs=55.0

Q ss_pred             HHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC
Q 013316           51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG  130 (445)
Q Consensus        51 pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~  130 (445)
                      |+|+++.....+-....+...  .+..++.+|..|+||||+|+.-|+...++.|+.+||++..+|++||+|| +-|...+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~--~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L-~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAK--VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPL-HEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhh--hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHH-HHHHHcC
Confidence            467776666555444333211  2345566677777777777777777777777777777777777777777 5555555


Q ss_pred             ChHHHHHHHhhh
Q 013316          131 SAKLRELLLWHS  142 (445)
Q Consensus       131 ~~~i~~~ll~~~  142 (445)
                      +.+++.-++.+.
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            555555554443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.46  E-value=4.4e-07  Score=87.74  Aligned_cols=91  Identities=24%  Similarity=0.285  Sum_probs=62.3

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCCCC--cC-CCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           15 ATIHGCAQSGDLLAFQRLLRENPSL--LN-ERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        15 t~L~~A~~~g~~~~v~~ll~~~~~~--~~-~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      ..|.-|+...|+..+..||. +|..  +| +..+.+|+|+||+||..|++.+.++|+.+    |+|+..+|..|+|+|.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLA-hg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy----g~dv~~rda~g~t~l~y  700 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLA-HGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY----GVDVMARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh----CccceecccCCchhhhh
Confidence            34666777777766665554 3332  22 22222567888888888888877877775    77777788888888888


Q ss_pred             HHHcCCHHHHHHHHhcCCC
Q 013316           92 AAKNGCNEAAKLLLAHGAF  110 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~  110 (445)
                      |-+.|..+|+.+|+.+|+-
T Consensus       701 ar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             HhhcccHHHHHHHHHcCCC
Confidence            8888888888888877765

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=98.45  E-value=2.6e-06  Score=78.92  Aligned_cols=130  Identities=17%  Similarity=0.231  Sum_probs=80.3

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe-EEeecccccc-c-----cc---CC--chhHHHHHHHHc---
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV-TEVQRTDLVG-E-----FV---GH--TGPKTRRRIKEA---  268 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~-~~~~~~~l~~-~-----~~---g~--~~~~~~~~~~~a---  268 (445)
                      +.+...||+||  +||+++|+.+|+.+.+.......+. .+-+|..+.. .     ++   |.  .-..++.+.+..   
T Consensus        22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~   99 (290)
T PRK07276         22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS   99 (290)
T ss_pred             CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence            34567899996  6899999999998876432111010 0111111100 0     11   11  223455544332   


Q ss_pred             ----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCC
Q 013316          269 ----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND  342 (445)
Q Consensus       269 ----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~  342 (445)
                          ...|++||++|++..           .+.|.||+.+++  ...++|+.+++...  +   -|.++||+ +.|+|+.
T Consensus       100 p~~~~~kV~II~~ad~m~~-----------~AaNaLLKtLEEPp~~t~~iL~t~~~~~--l---LpTI~SRc-q~i~f~~  162 (290)
T PRK07276        100 GYEGKQQVFIIKDADKMHV-----------NAANSLLKVIEEPQSEIYIFLLTNDENK--V---LPTIKSRT-QIFHFPK  162 (290)
T ss_pred             cccCCcEEEEeehhhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhh--C---chHHHHcc-eeeeCCC
Confidence                347999999999987           788999999997  33555555443221  1   58899999 9999977


Q ss_pred             CCHHHHHHHHH
Q 013316          343 FNSEELAKILH  353 (445)
Q Consensus       343 ~~~~~~~~il~  353 (445)
                       +.+++.+++.
T Consensus       163 -~~~~~~~~L~  172 (290)
T PRK07276        163 -NEAYLIQLLE  172 (290)
T ss_pred             -cHHHHHHHHH
Confidence             6666666654

>PRK09183 transposase/IS protein; Provisional

Probab=98.44  E-value=6.5e-07  Score=82.47  Aligned_cols=75  Identities=25%  Similarity=0.327  Sum_probs=48.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC-CchhHHHHHHHH--ccCcEEEEcCcccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE--AEGGILFVDEAYRL  281 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~--a~~~il~lDEid~l  281 (445)
                      ...+++|+||||||||++|.+++......+.    .+..++..++...+.. .....+...+..  ....+|+|||++..
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~----~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~  176 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGI----KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL  176 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence            4568999999999999999999888655332    5555666665433211 111123344433  34579999999776


Q ss_pred             cc
Q 013316          282 IP  283 (445)
Q Consensus       282 ~~  283 (445)
                      ..
T Consensus       177 ~~  178 (259)
T PRK09183        177 PF  178 (259)
T ss_pred             CC
Confidence            44

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.41  E-value=1.8e-06  Score=79.16  Aligned_cols=75  Identities=25%  Similarity=0.378  Sum_probs=53.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-c-hhHHHHHHH-HccCcEEEEcCcccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-T-GPKTRRRIK-EAEGGILFVDEAYRL  281 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~-~~~~~~~~~-~a~~~il~lDEid~l  281 (445)
                      ...+++|+||||||||.+|-+|++.+...+.    .+..++.++++..+-.. . +..-.++.. -...-+|+|||+-..
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~----sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~  179 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI----SVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE  179 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence            5679999999999999999999999986455    78888888887664321 1 111122233 234469999999665


Q ss_pred             cc
Q 013316          282 IP  283 (445)
Q Consensus       282 ~~  283 (445)
                      ..
T Consensus       180 ~~  181 (254)
T COG1484         180 PF  181 (254)
T ss_pred             cC
Confidence            43

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.41  E-value=1.3e-06  Score=82.23  Aligned_cols=74  Identities=16%  Similarity=0.284  Sum_probs=49.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-chhHHHHHHHHc-cCcEEEEcCccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRLI  282 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a-~~~il~lDEid~l~  282 (445)
                      ...+++|+||+|||||.+|.++++.+...+.    .+..+..+++...+-.. ......+.++.. .--+|+|||+..-.
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~----~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~  230 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV----SSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ  230 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc
Confidence            4568999999999999999999999976544    56666766665443211 111123344333 34799999995543

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.39  E-value=3.8e-07  Score=84.44  Aligned_cols=138  Identities=18%  Similarity=0.226  Sum_probs=72.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC--eEEeecccccccccCCchhHHHHHHHHc--------------
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR--VTEVQRTDLVGEFVGHTGPKTRRRIKEA--------------  268 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~~~~~~~~a--------------  268 (445)
                      ...++||.||+|||||++++.+=..+..      ..  ...++++...      +...+.+.++..              
T Consensus        32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~------~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~   99 (272)
T PF12775_consen   32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS------DKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGG   99 (272)
T ss_dssp             CTEEEEEESSTTSSHHHHHHHHHHCSTT------CCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESS
T ss_pred             cCCcEEEECCCCCchhHHHHhhhccCCc------cccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCC
Confidence            3568999999999999999875433221      12  2233443311      122222222111              


Q ss_pred             cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC--------CcEEEEEecCchhHHHHHhhCcccccccccc
Q 013316          269 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF  337 (445)
Q Consensus       269 ~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~  337 (445)
                      +..|+|||++..-.+...+  .....+.+.+++..   .+.        .++.+|+|.++..-.  ....|.|.|.| .+
T Consensus       100 k~lv~fiDDlN~p~~d~yg--tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr--~~is~R~~r~f-~i  174 (272)
T PF12775_consen  100 KKLVLFIDDLNMPQPDKYG--TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR--NPISPRFLRHF-NI  174 (272)
T ss_dssp             SEEEEEEETTT-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT----SHHHHHHTTE-EE
T ss_pred             cEEEEEecccCCCCCCCCC--CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC--CCCChHHhhhe-EE
Confidence            2379999999766653321  22222333333321   111        246777776653211  12357777777 78


Q ss_pred             eeCCCCCHHHHHHHHHHHHhcc
Q 013316          338 FHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       338 i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      +.++.|+.+.+..|+..++...
T Consensus       175 ~~~~~p~~~sl~~If~~il~~~  196 (272)
T PF12775_consen  175 LNIPYPSDESLNTIFSSILQSH  196 (272)
T ss_dssp             EE----TCCHHHHHHHHHHHHH
T ss_pred             EEecCCChHHHHHHHHHHHhhh
Confidence            9999999999999999888753

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.35  E-value=1.1e-06  Score=84.49  Aligned_cols=87  Identities=23%  Similarity=0.374  Sum_probs=73.8

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhC-CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 013316           15 ATIHGCAQSGDLLAFQRLLREN-PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA   93 (445)
Q Consensus        15 t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~   93 (445)
                      .|+|+++...+.+.+...+... ...++..|. .|.||||+|+.-||...++.|+.    .|+++.++|+.|++|||-|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~-~g~TpLhlAV~Lg~~~~a~~Ll~----a~Adv~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDP-PGRTPLHLAVRLGHVEAARILLS----AGADVSIKNNEGWSPLHEAV   96 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccC-CCCccHHHHHHhcCHHHHHHHHh----cCCCccccccccccHHHHHH
Confidence            4699999998888777755443 345667775 79999999999999999999998    48999999999999999999


Q ss_pred             HcCCHHHHHHHHh
Q 013316           94 KNGCNEAAKLLLA  106 (445)
Q Consensus        94 ~~g~~~~~~~Ll~  106 (445)
                      ..|+..++..++.
T Consensus        97 ~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   97 STGNEQIITEVLR  109 (560)
T ss_pred             HcCCHHHHHHHHH
Confidence            9999988776664

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=98.32  E-value=4.5e-06  Score=66.41  Aligned_cols=64  Identities=33%  Similarity=0.527  Sum_probs=45.5

Q ss_pred             HHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          162 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       162 ~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      ..++..|.+ |.||.-+.+.+.+.+......         .....|..+.|.|+||||||.+++.||+.+...+
T Consensus        17 ~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---------~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G   81 (127)
T PF06309_consen   17 TGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---------PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG   81 (127)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---------CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence            344555554 999999888887766544211         1223444566899999999999999999988754

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.32  E-value=4.6e-07  Score=91.10  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=73.3

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      -|.|+||.++..|....+++||. +|.+++.+|.+.|+||||.|..+|+.+++.+||++    |..+.++|.+|..||.+
T Consensus        51 ~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~----g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   51 YGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK----GRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             hccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHhc----CCceEEecccCCCHHHH
Confidence            59999999999999999999986 59999999988999999999999999999999996    78899999999999999


Q ss_pred             HHH
Q 013316           92 AAK   94 (445)
Q Consensus        92 A~~   94 (445)
                      -++
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            887

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.31  E-value=1.2e-06  Score=84.76  Aligned_cols=92  Identities=25%  Similarity=0.286  Sum_probs=77.6

Q ss_pred             hHHHHHHhCCcHHHHHHhhcCCCCCCcccc--cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc
Q 013316           50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELE--AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN  127 (445)
Q Consensus        50 tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~--~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~  127 (445)
                      .-|..|+...++..+-+||.++.  ...+|  ..+.+|+|+||+||+.|++.+.++|+-+|+|+.++|.+|.||| ++|.
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~--~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l-~yar  702 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGS--REEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTAL-FYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC--chhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhh-hhHh
Confidence            34666777777888888998743  22333  3566789999999999999999999999999999999999999 9999


Q ss_pred             CCCChHHHHHHHhhhhh
Q 013316          128 GPGSAKLRELLLWHSEE  144 (445)
Q Consensus       128 ~~~~~~i~~~ll~~~~~  144 (445)
                      ..+..++..+|+.+|..
T Consensus       703 ~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  703 QAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hcccHHHHHHHHHcCCC
Confidence            99999999999988854

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=98.29  E-value=7.6e-05  Score=68.81  Aligned_cols=160  Identities=13%  Similarity=0.234  Sum_probs=91.2

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHH-HHHHHHHHcCCCCCCCeEEeecccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVAR-ILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~-~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +.|..+..+.+.+++++.-.            .+....|++.||.|+|||++.- .++. ....    ..+|.-+.....
T Consensus        26 l~g~~~~~~~l~~~lkqt~~------------~gEsnsviiigprgsgkT~li~~~Ls~-~q~~----~E~~l~v~Lng~   88 (408)
T KOG2228|consen   26 LFGVQDEQKHLSELLKQTIL------------HGESNSVIIIGPRGSGKTILIDTRLSD-IQEN----GENFLLVRLNGE   88 (408)
T ss_pred             eeehHHHHHHHHHHHHHHHH------------hcCCCceEEEccCCCCceEeeHHHHhh-HHhc----CCeEEEEEECcc
Confidence            67777777777777765532            3456789999999999997643 3333 2221    114433332221


Q ss_pred             c---------------------ccccCCchhHHHHHHHHc-------cCcEEE-EcCcccccc-CCCCCCchhHHHHHHH
Q 013316          250 V---------------------GEFVGHTGPKTRRRIKEA-------EGGILF-VDEAYRLIP-MQKADDKDYGIEALEE  299 (445)
Q Consensus       250 ~---------------------~~~~g~~~~~~~~~~~~a-------~~~il~-lDEid~l~~-~~~~~~~~~~~~~~~~  299 (445)
                      .                     .+-+|-...++.+++..-       .+.|+| +||||..++ .||        -.+-.
T Consensus        89 ~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQ--------tllYn  160 (408)
T KOG2228|consen   89 LQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQ--------TLLYN  160 (408)
T ss_pred             chhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhh--------HHHHH
Confidence            1                     112344445555554322       123555 568999886 222        22333


Q ss_pred             HHhhcc--CCcEEEEEecCchhHHHHHhhCcccccccc-cceeC-CCCCHHHHHHHHHHHHh
Q 013316          300 IMSVMD--GGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHF-NDFNSEELAKILHIKMN  357 (445)
Q Consensus       300 ll~~~~--~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~-~~~~~~~~~~il~~~l~  357 (445)
                      |...-+  ...+++|+.|++-+....+  -....+||. ++|.| |..+-++...+++..+.
T Consensus       161 lfDisqs~r~Piciig~Ttrld~lE~L--EKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~  220 (408)
T KOG2228|consen  161 LFDISQSARAPICIIGVTTRLDILELL--EKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS  220 (408)
T ss_pred             HHHHHhhcCCCeEEEEeeccccHHHHH--HHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence            333333  3568899887765444332  356788997 44544 44557888888887764

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.24  E-value=4.2e-06  Score=71.36  Aligned_cols=104  Identities=22%  Similarity=0.275  Sum_probs=59.1

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc----------------------cccCCc-hhHH----
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----------------------EFVGHT-GPKT----  261 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~----------------------~~~g~~-~~~~----  261 (445)
                      ++++||||+|||+++..++......+    .+++.++......                      .+.... ....    
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~----~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKG----GKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKA   77 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcC----CEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHH
Confidence            68999999999999999998876422    2444444432111                      000111 1111    


Q ss_pred             HHHHHHccCcEEEEcCccccccCCC---CCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316          262 RRRIKEAEGGILFVDEAYRLIPMQK---ADDKDYGIEALEEIMSVMDGGKVVVIFAGY  316 (445)
Q Consensus       262 ~~~~~~a~~~il~lDEid~l~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~  316 (445)
                      ..........+++|||+..+.+...   .+......+.+..|.....+..+.+|+++.
T Consensus        78 ~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~  135 (165)
T cd01120          78 ERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQ  135 (165)
T ss_pred             HHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            1222333568999999998875321   111223345566666666655666666544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.23  E-value=4e-05  Score=74.96  Aligned_cols=178  Identities=15%  Similarity=0.123  Sum_probs=89.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCch------hHHHHHHHHc------------
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG------PKTRRRIKEA------------  268 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~------~~~~~~~~~a------------  268 (445)
                      .-+||+||+||||||+.+.++++++....--..|+.......+...-.+.+.      ......+..+            
T Consensus       111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~  190 (634)
T KOG1970|consen  111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD  190 (634)
T ss_pred             eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence            4578899999999999999999987521100111111112222222122110      0111111111            


Q ss_pred             ---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc-cCC--cEEEEEecCch-----hHHHHHhhCcccccccccc
Q 013316          269 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGG--KVVVIFAGYSE-----PMKRVIASNEGFCRRVTKF  337 (445)
Q Consensus       269 ---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~-~~~--~~~~i~a~~~~-----~~~~~~~~~~~l~~R~~~~  337 (445)
                         .+.+|++||+=..+-.      + ..+.+...|+.+ ..+  .+++|++....     ....+ ..+=...-|+ ..
T Consensus       191 ~~~~~~liLveDLPn~~~~------d-~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf-~~d~q~~~ri-~~  261 (634)
T KOG1970|consen  191 LRTDKKLILVEDLPNQFYR------D-DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLF-PKDIQEEPRI-SN  261 (634)
T ss_pred             cccCceEEEeeccchhhhh------h-hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhc-hhhhhhccCc-ce
Confidence               1258999998554432      1 223444433333 222  24454443221     11111 0011112244 77


Q ss_pred             eeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchh
Q 013316          338 FHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  399 (445)
Q Consensus       338 i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~  399 (445)
                      |.|.+..+.=+..-|..++.........  ++    +...+....+-..++||+|.+.|--+
T Consensus       262 IsFNPIa~T~MKK~L~ric~~e~~~~s~--~k----~~~~~~v~~i~~~s~GDIRsAInsLQ  317 (634)
T KOG1970|consen  262 ISFNPIAPTIMKKFLKRICRIEANKKSG--IK----VPDTAEVELICQGSGGDIRSAINSLQ  317 (634)
T ss_pred             EeecCCcHHHHHHHHHHHHHHhcccccC--Cc----CchhHHHHHHHHhcCccHHHHHhHhh
Confidence            8999999999999998888876543332  11    22233344555666788887766433

>PHA00729 NTP-binding motif containing protein

Probab=98.23  E-value=4.3e-06  Score=74.16  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=23.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+++|+|+||||||++|.+|+..+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34899999999999999999999875

>PRK14700 recombination factor protein RarA; Provisional

Probab=98.23  E-value=3.2e-06  Score=77.41  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=81.4

Q ss_pred             hhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHH
Q 013316          302 SVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA  381 (445)
Q Consensus       302 ~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  381 (445)
                      ..+++|.+++|+|||.+|.-.+   +|+|++|+ +++.|.+++.+++..++++.+.... .++    .....++++++. 
T Consensus         2 p~vE~G~i~LIGATTENP~f~v---n~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~-~~~----~~~~~i~~~al~-   71 (300)
T PRK14700          2 PYVESGKIILIGATTENPTYYL---NDALVSRL-FILRLKRLSLVATQKLIEKALSQDE-VLA----KHKFKIDDGLYN-   71 (300)
T ss_pred             CCccCCcEEEEeecCCCcccee---cHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhh-ccC----CcCCCcCHHHHH-
Confidence            4578899999999999998765   99999999 9999999999999999999987521 122    113356777877 


Q ss_pred             HHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          382 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       382 ~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      .+...++||.|...|      ++|.+....        ... +...||.+++++.++.
T Consensus        72 ~ia~~a~GDaR~aLN------~LE~a~~~~--------~~~-~~~~it~~~~~~~~~~  114 (300)
T PRK14700         72 AMHNYNEGDCRKILN------LLERMFLIS--------TRG-DEIYLNKELFDQAVGE  114 (300)
T ss_pred             HHHHhcCCHHHHHHH------HHHHHHhhc--------ccc-CCCccCHHHHHHHHhH
Confidence            555778777777666      455542110        011 1124888998888764

>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]

Probab=98.19  E-value=2e-05  Score=76.12  Aligned_cols=57  Identities=26%  Similarity=0.439  Sum_probs=41.0

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .|.|..++|+.+.=    +++.-.++.+.-.+.....-+|||.|.|||-|+-+.+.+-+-.
T Consensus       332 SIfG~~DiKkAiaC----lLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs  388 (729)
T KOG0481|consen  332 SIFGHEDIKKAIAC----LLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS  388 (729)
T ss_pred             hhcCchhHHHHHHH----HhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC
Confidence            38888888877663    3333345555444555567799999999999999998886543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.18  E-value=2.2e-06  Score=89.09  Aligned_cols=126  Identities=21%  Similarity=0.117  Sum_probs=101.4

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      ...|++-+|.++..++...+..++.-.+......+. +|...+|+ |..++++.+-+++..   +|..++.+|..|+|||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~-d~qgV~hf-ca~lg~ewA~ll~~~---~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR-DGQGVIHF-CAALGYEWAFLPISA---DGVAIDIRDRNGWTPL  645 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc-cCCChhhH-hhhcCCceeEEEEee---cccccccccCCCCccc
Confidence            447899999999999999999888643444444443 57778888 666778888888776   6788999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCc------ccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIE------AKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~------~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                      |||+..|+..++..|++.|++..      .....|.|+- ..+..+++..+..+|.+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~-~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAA-DLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchh-hhhhcccccchHHHHhhh
Confidence            99999999999999998888654      3345688998 778888999998888654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.14  E-value=3.4e-05  Score=63.58  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=26.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      ....+.++|+||+||||++..|+..+...+
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g   33 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG   33 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence            456899999999999999999999997754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.13  E-value=4.2e-06  Score=80.87  Aligned_cols=92  Identities=22%  Similarity=0.291  Sum_probs=80.9

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCc-CCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLL-NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      ....+-||+|+..|+-++|+++|...+..+ +..+ ..|.|+||-|+..++-.++++|++    .|+.+...|..|.||-
T Consensus       897 ~~~~sllh~a~~tg~~eivkyildh~p~elld~~d-e~get~lhkaa~~~~r~vc~~lvd----agasl~ktd~kg~tp~  971 (1004)
T KOG0782|consen  897 PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD-ETGETALHKAACQRNRAVCQLLVD----AGASLRKTDSKGKTPQ  971 (1004)
T ss_pred             cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh-hhhhHHHHHHHHhcchHHHHHHHh----cchhheecccCCCChH
Confidence            457889999999999999999998776644 4445 489999999999999999999999    5899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhc
Q 013316           90 HMAAKNGCNEAAKLLLAH  107 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~  107 (445)
                      .-|-..|+.+.+.||-..
T Consensus       972 eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  972 ERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHhcCCchHHHHHhhh
Confidence            999999999999988753

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.09  E-value=5.3e-06  Score=74.66  Aligned_cols=65  Identities=29%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc--cCcEEEEcCcccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIP  283 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~  283 (445)
                      ..+-.++||+|||||.+++.+|+.+++       +++.++|++..      +...+.++|.=+  .|+-+.+||++++..
T Consensus        32 ~~~~~~~GpagtGKtetik~La~~lG~-------~~~vfnc~~~~------~~~~l~ril~G~~~~GaW~cfdefnrl~~   98 (231)
T PF12774_consen   32 NLGGALSGPAGTGKTETIKDLARALGR-------FVVVFNCSEQM------DYQSLSRILKGLAQSGAWLCFDEFNRLSE   98 (231)
T ss_dssp             TTEEEEESSTTSSHHHHHHHHHHCTT---------EEEEETTSSS-------HHHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred             CCCCCCcCCCCCCchhHHHHHHHHhCC-------eEEEecccccc------cHHHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence            346678999999999999999999998       99999998753      334455555322  578999999999875

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.08  E-value=1.3e-05  Score=63.17  Aligned_cols=82  Identities=17%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHHcCCCC-CCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCC
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYMVGILP-TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQK  286 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~  286 (445)
                      |.|+||||+|||++|+.|+..+....... ...+...++.+              +.++-- ...++++||+....... 
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~--------------~~w~gY~~q~vvi~DD~~~~~~~~-   65 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD--------------KFWDGYQGQPVVIIDDFGQDNDGY-   65 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc--------------chhhccCCCcEEEEeecCcccccc-
Confidence            57999999999999999999887632111 12333222211              122221 33689999996665421 


Q ss_pred             CCCchhHHHHHHHHHhhccCCcEEE
Q 013316          287 ADDKDYGIEALEEIMSVMDGGKVVV  311 (445)
Q Consensus       287 ~~~~~~~~~~~~~ll~~~~~~~~~~  311 (445)
                            .......+++.++...+.+
T Consensus        66 ------~~~~~~~l~~l~s~~~~~~   84 (107)
T PF00910_consen   66 ------NYSDESELIRLISSNPFQP   84 (107)
T ss_pred             ------chHHHHHHHHHHhcCCccc
Confidence                  1124556777776544333

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=98.08  E-value=1.4e-05  Score=70.60  Aligned_cols=101  Identities=22%  Similarity=0.276  Sum_probs=57.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCCchhHHHHHHH------------Hcc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRIK------------EAE  269 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~~~~~~~~~~~------------~a~  269 (445)
                      ....++.||||||||++.+.+...+...+.    .++-+.++.-.    .+-.|.....+.+.+.            ...
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~----~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~   93 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAEALEAAGK----RVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPK   93 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TS
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHHHhCCC----eEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCc
Confidence            356888999999999999999988876432    55555554311    1111111122222221            123


Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHH
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK  321 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~  321 (445)
                      ..+|+|||+..+..           ..+..|+..+......+|+.+.+....
T Consensus        94 ~~vliVDEasmv~~-----------~~~~~ll~~~~~~~~klilvGD~~QL~  134 (196)
T PF13604_consen   94 KDVLIVDEASMVDS-----------RQLARLLRLAKKSGAKLILVGDPNQLP  134 (196)
T ss_dssp             TSEEEESSGGG-BH-----------HHHHHHHHHS-T-T-EEEEEE-TTSHH
T ss_pred             ccEEEEecccccCH-----------HHHHHHHHHHHhcCCEEEEECCcchhc
Confidence            37999999966654           667778888877444555555444443

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=98.06  E-value=0.00017  Score=69.18  Aligned_cols=129  Identities=15%  Similarity=0.131  Sum_probs=75.8

Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhC----------cc-cccccccce
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASN----------EG-FCRRVTKFF  338 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~----------~~-l~~R~~~~i  338 (445)
                      .-|+||||+|++.+       +...++++.+-..++-.++++|.+.+.......+...          .. |..-|+..+
T Consensus       173 ~iViiIDdLDR~~~-------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~  245 (325)
T PF07693_consen  173 RIVIIIDDLDRCSP-------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPF  245 (325)
T ss_pred             eEEEEEcchhcCCc-------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEE
Confidence            37999999999976       3334555555566666888888887766655443322          12 223457788


Q ss_pred             eCCCCCHHHHHHHHHHHHhcccccccccccccCCccc------HHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          339 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCS------MDAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       339 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      .+|+++..++...+...+.+..........  ...+.      ....................|.|.++.++...
T Consensus       246 ~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~  318 (325)
T PF07693_consen  246 SLPPPSPSDLERYLNELLESLESETNESDD--IETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSL  318 (325)
T ss_pred             EeCCCCHHHHHHHHHHHHHHhhhccccccc--hhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHH
Confidence            999999999998888876654322111000  00000      00112223333322234567888888888654

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.00017  Score=64.18  Aligned_cols=173  Identities=19%  Similarity=0.226  Sum_probs=94.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc-----ccccc----CCchhHHH--------H---HH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-----VGEFV----GHTGPKTR--------R---RI  265 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l-----~~~~~----g~~~~~~~--------~---~~  265 (445)
                      ..-+.++|+.|||||++.|++...+....+    ..+.++...+     ...++    +.-...+.        .   .+
T Consensus        51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~----~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~  126 (269)
T COG3267          51 QGILAVTGEVGSGKTVLRRALLASLNEDQV----AVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV  126 (269)
T ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCce----EEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence            346778999999999999977766654222    2223333222     11111    11001111        1   12


Q ss_pred             HHcc-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcc---ccccccccee
Q 013316          266 KEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEG---FCRRVTKFFH  339 (445)
Q Consensus       266 ~~a~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~---l~~R~~~~i~  339 (445)
                      ..-+ +-++++||++.+....        .+.+..|...-++  +..-++..+.+....++  ..|.   +..|++..|.
T Consensus       127 ~~g~r~v~l~vdEah~L~~~~--------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~l--r~~~l~e~~~R~~ir~~  196 (269)
T COG3267         127 KKGKRPVVLMVDEAHDLNDSA--------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRL--RLPVLRELEQRIDIRIE  196 (269)
T ss_pred             HhCCCCeEEeehhHhhhChhH--------HHHHHHHHhhcccccCceeeeecCCcccchhh--chHHHHhhhheEEEEEe
Confidence            2223 3799999998887611        1333333333222  33345555544433322  1233   3459987799


Q ss_pred             CCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          340 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       340 ~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      +++++.++....+++.++.-.        ...+-++.+++.+ +...+.+      -.+.+.+++..|
T Consensus       197 l~P~~~~~t~~yl~~~Le~a~--------~~~~l~~~~a~~~-i~~~sqg------~P~lin~~~~~A  249 (269)
T COG3267         197 LPPLTEAETGLYLRHRLEGAG--------LPEPLFSDDALLL-IHEASQG------IPRLINNLATLA  249 (269)
T ss_pred             cCCcChHHHHHHHHHHHhccC--------CCcccCChhHHHH-HHHHhcc------chHHHHHHHHHH
Confidence            999999999999999998752        2234455566553 3344422      244556666666

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.99  E-value=2.1e-05  Score=72.75  Aligned_cols=69  Identities=25%  Similarity=0.347  Sum_probs=49.5

Q ss_pred             hHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316           50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL  122 (445)
Q Consensus        50 tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl  122 (445)
                      .-|..||+.|+.+.|++|++.    |.+||..|.+...||.+|+..||.++|++|+++||-+..-.-.|.-.+
T Consensus        38 ~elceacR~GD~d~v~~LVet----gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET----GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh----CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            356677777777777777773    677777777777777777777777777777777777665555666554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.98  E-value=0.00023  Score=70.12  Aligned_cols=31  Identities=32%  Similarity=0.524  Sum_probs=26.6

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      ..|..++|+|++|+||||+|..+|..+...+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g  123 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKG  123 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence            3577899999999999999999999887643

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.95  E-value=0.0008  Score=63.32  Aligned_cols=131  Identities=21%  Similarity=0.264  Sum_probs=78.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc----------c-----ccCC----chhHHH--
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----------E-----FVGH----TGPKTR--  262 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~----------~-----~~g~----~~~~~~--  262 (445)
                      ..|.++.+||-+|||||.+.|.+-+.++.       +.+.++|-+...          +     .-|.    ...++.  
T Consensus        28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~  100 (438)
T KOG2543|consen   28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDF  100 (438)
T ss_pred             ccceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHH
Confidence            35778899999999999999999888755       455555443110          0     1111    111221  


Q ss_pred             -HHHHH---c----cCcEEEEcCccccccCCCCCCchhHHHHHH---HHHhhccCCcEEEEEecCchhHHHHHhhCcccc
Q 013316          263 -RRIKE---A----EGGILFVDEAYRLIPMQKADDKDYGIEALE---EIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFC  331 (445)
Q Consensus       263 -~~~~~---a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~  331 (445)
                       ..|.+   +    +.-.|++|.+|.+-.        ++.-.+.   .|...++...+.+|.....-+.....     -.
T Consensus       101 i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~-----n~  167 (438)
T KOG2543|consen  101 IYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLI-----NT  167 (438)
T ss_pred             HHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhc-----cc
Confidence             23333   1    246899999999963        2223344   44455566677777664443333211     01


Q ss_pred             ccc-ccceeCCCCCHHHHHHHHHH
Q 013316          332 RRV-TKFFHFNDFNSEELAKILHI  354 (445)
Q Consensus       332 ~R~-~~~i~~~~~~~~~~~~il~~  354 (445)
                      +-+ ..+++||.|+.+|...|+.+
T Consensus       168 g~~~i~~l~fP~Ys~~e~~~Il~~  191 (438)
T KOG2543|consen  168 GTLEIVVLHFPQYSVEETQVILSR  191 (438)
T ss_pred             CCCCceEEecCCCCHHHHHHHHhc
Confidence            223 27789999999999999864

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.95  E-value=0.0001  Score=63.89  Aligned_cols=136  Identities=15%  Similarity=0.158  Sum_probs=66.1

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA  287 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~  287 (445)
                      -.+|+||+|||||.+|-.+|+..+.       +++..+.--...++.-.+++....-+...+.  +||||-  -...+  
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y~~l~v~Sgrp~~~el~~~~R--iyL~~r--~l~~G--   69 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCYPELSVGSGRPTPSELKGTRR--IYLDDR--PLSDG--   69 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-GGGTTTTT---SGGGTT-EE--EES------GGG---
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCC-------CEEEecceecccccccccCCCCHHHHcccce--eeeccc--cccCC--
Confidence            3678999999999999999999988       8887776554444322244333222322232  777753  11111  


Q ss_pred             CCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcc
Q 013316          288 DDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       288 ~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                        .-...++.+.|+..+++   .+.+++=.++-.....+. .++-....|. .+..++.++.+--..-+...++++
T Consensus        70 --~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~-~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M  142 (233)
T PF01745_consen   70 --IINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMA-QDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM  142 (233)
T ss_dssp             --S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHH-H-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred             --CcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHH-hcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence              11122334444444432   445555555555555553 3444434554 455888888888777777777765

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK04296 thymidine kinase; Provisional

Probab=97.94  E-value=2.8e-05  Score=68.22  Aligned_cols=26  Identities=12%  Similarity=-0.114  Sum_probs=21.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      -.+++||||+|||+++..++..+...
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~~   29 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEER   29 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHc
Confidence            46789999999999998888877543

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=97.94  E-value=2.7e-05  Score=82.18  Aligned_cols=192  Identities=14%  Similarity=0.149  Sum_probs=108.5

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCe--eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH--MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .++.|.......+.+|.+..+-+  ++-.+..........  ++++||||+|||+.|..+++.++.       .+++.+.
T Consensus       320 k~~~~~~~~~~~~~~~l~~~k~~--~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~-------~v~E~Na  390 (871)
T KOG1968|consen  320 KALEGNASSSKKASKWLAKSKDK--EKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF-------KVVEKNA  390 (871)
T ss_pred             HhhhcccchhhhhhhHHHhhhcc--ccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc-------ceeecCc
Confidence            44666666555666665544221  111121111112222  689999999999999999999887       8889998


Q ss_pred             cccccccc-----CC--chhHHHHHH-------HH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEE
Q 013316          247 TDLVGEFV-----GH--TGPKTRRRI-------KE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV  311 (445)
Q Consensus       247 ~~l~~~~~-----g~--~~~~~~~~~-------~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  311 (445)
                      ++..+.+.     |.  +...+...+       .. ....||++||+|-+.. .       .+..+.++...+....+-+
T Consensus       391 s~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~ks~~Pi  462 (871)
T KOG1968|consen  391 SDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCKKSSRPL  462 (871)
T ss_pred             cccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHHhccCCe
Confidence            87665532     21  122222222       00 1235999999999886 1       1123444444444433333


Q ss_pred             EEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          312 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       312 i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      |++.+....-     ......|-+.-++|+.|+.+.+..-+...+....       +    .++.+.+..++... ++|+
T Consensus       463 v~~cndr~~p-----~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~-------~----ki~~~~l~~~s~~~-~~Di  525 (871)
T KOG1968|consen  463 VCTCNDRNLP-----KSRALSRACSDLRFSKPSSELIRSRIMSICKSEG-------I----KISDDVLEEISKLS-GGDI  525 (871)
T ss_pred             EEEecCCCCc-----cccchhhhcceeeecCCcHHHHHhhhhhhhcccc-------e----ecCcHHHHHHHHhc-ccCH
Confidence            3332221110     1111224346789999999999888888777642       2    35556777666544 3444


Q ss_pred             hcc
Q 013316          392 RRE  394 (445)
Q Consensus       392 ~~~  394 (445)
                      |.-
T Consensus       526 R~~  528 (871)
T KOG1968|consen  526 RQI  528 (871)
T ss_pred             HHH
Confidence            433

>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=5.6e-05  Score=77.43  Aligned_cols=152  Identities=17%  Similarity=0.213  Sum_probs=103.1

Q ss_pred             HHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------------cEEEEEecCch
Q 013316          262 RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSE  318 (445)
Q Consensus       262 ~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~  318 (445)
                      ...+.+|.+|||||||+..|..           ..++.+|+.|...                       ++.+|++++..
T Consensus       218 pGaVHkAngGVLiIdei~lL~~-----------~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~  286 (647)
T COG1067         218 PGAVHKANGGVLIIDEIGLLAQ-----------PLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE  286 (647)
T ss_pred             CcccccccCcEEEEEhhhhhCc-----------HHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHH
Confidence            3478889999999999988886           5566666666432                       36888898888


Q ss_pred             hHHHHHhhCcccccccccceeC--CCC-CHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH---hhh
Q 013316          319 PMKRVIASNEGFCRRVTKFFHF--NDF-NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQR  392 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~--~~~-~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~  392 (445)
                      .+..+...++.++.-|....+|  +.| +++.+...++.+.+......+      -+.++.+++..++......   ..+
T Consensus       287 ~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~------ip~~~~~Av~~li~~a~R~Ag~~~~  360 (647)
T COG1067         287 DLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGN------IPHLDKDAVEELIREAARRAGDQNK  360 (647)
T ss_pred             HHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHhccccce
Confidence            7777644444444434333444  445 578888888887776643311      3567888888776554432   234


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      .+.+.|++.+++..|         ...+..++...|+.+||++|++.
T Consensus       361 Ltl~~rdl~~lv~~A---------~~ia~~~~~~~I~ae~Ve~a~~~  398 (647)
T COG1067         361 LTLRLRDLGNLVREA---------GDIAVSEGRKLITAEDVEEALQK  398 (647)
T ss_pred             eccCHHHHHHHHHHh---------hHHHhcCCcccCcHHHHHHHHHh
Confidence            568899999999876         22223334557999999999986

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.90  E-value=5.5e-05  Score=66.23  Aligned_cols=24  Identities=33%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ++++||||||||+++..++.....
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~   25 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA   25 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999888776544

A related protein is found in archaea.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.89  E-value=9.9e-06  Score=84.76  Aligned_cols=88  Identities=34%  Similarity=0.444  Sum_probs=77.5

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS  126 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a  126 (445)
                      .|.++||.|+.++..-++++|+.    +|+++|..|..|.||||.+...|+...+..|+++|++.++.+..|.+|++++.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh
Confidence            47899999999999999999999    48899999999999999999999999999999999999999999999995544


Q ss_pred             cCCCChHHHHHHH
Q 013316          127 NGPGSAKLRELLL  139 (445)
Q Consensus       127 ~~~~~~~i~~~ll  139 (445)
                      .. .+.+++-++.
T Consensus       731 ~~-~~~d~~~l~~  742 (785)
T KOG0521|consen  731 EA-ANADIVLLLR  742 (785)
T ss_pred             hh-ccccHHHHHh
Confidence            44 6666665553

>PLN03210 Resistant to P

Probab=97.88  E-value=0.00029  Score=78.87  Aligned_cols=51  Identities=22%  Similarity=0.344  Sum_probs=38.0

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +++++|.+...+++..++.              ........+-++||+|+||||+|++++..+..
T Consensus       183 ~~~~vG~~~~l~~l~~lL~--------------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~  233 (1153)
T PLN03210        183 FEDFVGIEDHIAKMSSLLH--------------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR  233 (1153)
T ss_pred             cccccchHHHHHHHHHHHc--------------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence            4568898887777776532              12234456789999999999999999887754

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.88  E-value=0.00019  Score=67.47  Aligned_cols=134  Identities=17%  Similarity=0.262  Sum_probs=68.2

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc------ccc---ccCC---------chhHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL------VGE---FVGH---------TGPKTRRRI  265 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l------~~~---~~g~---------~~~~~~~~~  265 (445)
                      .....+.++|++|+|||++|+.+++........  ..++.++.+.-      ...   .++.         ......+.+
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f--~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l   94 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF--DGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQL   94 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC--TEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHH
T ss_pred             CCeEEEEEEcCCcCCcceeeeeccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345678899999999999999999875432222  12233333321      000   1111         112222222


Q ss_pred             HH---ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeC
Q 013316          266 KE---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF  340 (445)
Q Consensus       266 ~~---a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~  340 (445)
                      .+   .+..+|+||+++...             ....+...+..  ....+|.+|.......      .+. .-...+.+
T Consensus        95 ~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~kilvTTR~~~v~~------~~~-~~~~~~~l  154 (287)
T PF00931_consen   95 RELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSSGSKILVTTRDRSVAG------SLG-GTDKVIEL  154 (287)
T ss_dssp             HHHHCCTSEEEEEEEE-SHH-------------HH-------HCHHSS-EEEEEESCGGGGT------THH-SCEEEEEC
T ss_pred             hhhhccccceeeeeeecccc-------------ccccccccccccccccccccccccccccc------ccc-cccccccc
Confidence            22   246999999985443             22223322221  2344555554432221      011 11367899


Q ss_pred             CCCCHHHHHHHHHHHHhcc
Q 013316          341 NDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       341 ~~~~~~~~~~il~~~l~~~  359 (445)
                      +.++.+|-.+++.......
T Consensus       155 ~~L~~~ea~~L~~~~~~~~  173 (287)
T PF00931_consen  155 EPLSEEEALELFKKRAGRK  173 (287)
T ss_dssp             SS--HHHHHHHHHHHHTSH
T ss_pred             ccccccccccccccccccc
Confidence            9999999999999887654

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]

Probab=97.87  E-value=0.00012  Score=70.92  Aligned_cols=100  Identities=24%  Similarity=0.333  Sum_probs=59.4

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +|.|.+++|+.|.=++-..  +.+.+..|  +......+|++.|.||+-|+-+.+.|.+...+ +     -+..-..|  
T Consensus       343 EIyGheDVKKaLLLlLVGg--vd~~~~dG--MKIRGdINicLmGDPGVAKSQLLkyi~rlapR-g-----vYTTGrGS--  410 (721)
T KOG0482|consen  343 EIYGHEDVKKALLLLLVGG--VDKSPGDG--MKIRGDINICLMGDPGVAKSQLLKYISRLAPR-G-----VYTTGRGS--  410 (721)
T ss_pred             hhccchHHHHHHHHHhhCC--CCCCCCCC--ceeecceeEEecCCCchhHHHHHHHHHhcCcc-c-----ceecCCCC--
Confidence            5899999988776432211  01111122  22344568999999999999999999887643 1     11111111  


Q ss_pred             cccccCCchhHHHH-----------HHHHccCcEEEEcCcccccc
Q 013316          250 VGEFVGHTGPKTRR-----------RIKEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       250 ~~~~~g~~~~~~~~-----------~~~~a~~~il~lDEid~l~~  283 (445)
                        .-+|-+..-+++           .+-.|.+||-.|||+|+...
T Consensus       411 --SGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e  453 (721)
T KOG0482|consen  411 --SGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE  453 (721)
T ss_pred             --CccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhh
Confidence              122222222221           33456789999999999975

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=97.87  E-value=3.8e-05  Score=73.99  Aligned_cols=82  Identities=21%  Similarity=0.266  Sum_probs=51.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH-HHcCCCCCCCeEEeecccccccccCCchhHHHHHHH-HccCcEEEEcCccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLI  282 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-~a~~~il~lDEid~l~  282 (445)
                      ...|+++.||+|||||.+|.+++... ...+     .  .++.+.|...+    ..   +.+. -+..-+|+|||+..+.
T Consensus       208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-----~--f~T~a~Lf~~L----~~---~~lg~v~~~DlLI~DEvgylp  273 (449)
T TIGR02688       208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG-----G--TITVAKLFYNI----ST---RQIGLVGRWDVVAFDEVATLK  273 (449)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-----C--cCcHHHHHHHH----HH---HHHhhhccCCEEEEEcCCCCc
Confidence            45799999999999999999998873 2222     1  22333333221    11   2222 2355799999998865


Q ss_pred             cCCCCCCchhHHHHHHHHHhhccCC
Q 013316          283 PMQKADDKDYGIEALEEIMSVMDGG  307 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~~~~~  307 (445)
                      -.+.       .+.+..|...|+++
T Consensus       274 ~~~~-------~~~v~imK~yMesg  291 (449)
T TIGR02688       274 FAKP-------KELIGILKNYMESG  291 (449)
T ss_pred             CCch-------HHHHHHHHHHHHhC
Confidence            4322       35677777778763

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]

Probab=97.83  E-value=0.0002  Score=70.94  Aligned_cols=104  Identities=22%  Similarity=0.291  Sum_probs=58.9

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------CeEE
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------RVTE  243 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------~~~~  243 (445)
                      .|.|...+|..+.=.+    +.-..+..+.+.......++||.|.|||||+-+.|.+++...+. ++.++      .+..
T Consensus       450 sIyGh~~VK~AvAlaL----fGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RA-V~tTGqGASavGLTa  524 (854)
T KOG0477|consen  450 SIYGHEDVKRAVALAL----FGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRA-VFTTGQGASAVGLTA  524 (854)
T ss_pred             hhhchHHHHHHHHHHH----hcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcce-eEeccCCccccceeE
Confidence            4788888887665321    11111112222223445699999999999999999999887651 11100      1111


Q ss_pred             eeccc-ccccccCCchhHHHHHHHHccCcEEEEcCcccccc
Q 013316          244 VQRTD-LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       244 ~~~~~-l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~  283 (445)
                      ...-+ ...+|.=+.+     .+-.|.+||-+|||+|++..
T Consensus       525 ~v~KdPvtrEWTLEaG-----ALVLADkGvClIDEFDKMnd  560 (854)
T KOG0477|consen  525 YVRKDPVTREWTLEAG-----ALVLADKGVCLIDEFDKMND  560 (854)
T ss_pred             EEeeCCccceeeeccC-----eEEEccCceEEeehhhhhcc
Confidence            00001 1222322222     34467889999999999975

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.80  E-value=0.00015  Score=66.77  Aligned_cols=165  Identities=10%  Similarity=0.153  Sum_probs=88.9

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      ++-.+++.+.|.+..+.+              ..+..|+|+.|.+|+||++++|..+...+.       .++.+..+.-.
T Consensus        10 lVlf~~ai~hi~ri~RvL--------------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~-------~~~~i~~~~~y   68 (268)
T PF12780_consen   10 LVLFDEAIEHIARISRVL--------------SQPRGHALLVGVGGSGRQSLARLAAFICGY-------EVFQIEITKGY   68 (268)
T ss_dssp             ----HHHHHHHHHHHHHH--------------CSTTEEEEEECTTTSCHHHHHHHHHHHTTE-------EEE-TTTSTTT
T ss_pred             eeeHHHHHHHHHHHHHHH--------------cCCCCCeEEecCCCccHHHHHHHHHHHhcc-------ceEEEEeeCCc
Confidence            666777777777765544              345679999999999999999988877665       56655543211


Q ss_pred             ccccCCchhHHHHHHHHc----cCcEEEEcCccccc-----------cCCCCC---CchhHHHHHHHHHhhc--------
Q 013316          251 GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLI-----------PMQKAD---DKDYGIEALEEIMSVM--------  304 (445)
Q Consensus       251 ~~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~-----------~~~~~~---~~~~~~~~~~~ll~~~--------  304 (445)
                      +  ..+-...+++++..|    ++.+++|+|-+-..           .++.-.   ..+....+++.+....        
T Consensus        69 ~--~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~  146 (268)
T PF12780_consen   69 S--IKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDS  146 (268)
T ss_dssp             H--HHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SS
T ss_pred             C--HHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCc
Confidence            0  000123445555544    34677776643221           111100   1111122222222111        


Q ss_pred             ------------cCC-cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          305 ------------DGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       305 ------------~~~-~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                                  .++ .+++++.........-....|+|..++ .+.-|.+-+.+.+..+...++++.
T Consensus       147 ~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~  213 (268)
T PF12780_consen  147 RESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDI  213 (268)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred             hHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence                        111 234444443333333334469988876 677888889999999999998864

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.79  E-value=0.0025  Score=62.41  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=26.2

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .+|..++|.|++|+||||++..+|..+...+
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G  128 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKG  128 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            4466788999999999999999999886543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.78  E-value=0.00012  Score=70.57  Aligned_cols=110  Identities=17%  Similarity=0.158  Sum_probs=61.1

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc--cccccccCCchhHHHHHHHH-ccC-cEEEEcCc
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT--DLVGEFVGHTGPKTRRRIKE-AEG-GILFVDEA  278 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~--~l~~~~~g~~~~~~~~~~~~-a~~-~il~lDEi  278 (445)
                      ...+.++.|+||+|+|||++.-.+...+.... -...+|...-..  .-+..+.|. ...+..+.++ +.+ -+|+|||+
T Consensus        59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~~~lLcfDEF  136 (362)
T PF03969_consen   59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-KRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKESRLLCFDEF  136 (362)
T ss_pred             CCCCceEEEECCCCCchhHHHHHHHHhCCccc-cccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhcCCEEEEeee
Confidence            45788999999999999999988887764311 011122111110  000111121 1112222222 233 49999998


Q ss_pred             cccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHH
Q 013316          279 YRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKR  322 (445)
Q Consensus       279 d~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~  322 (445)
                      +---.      +  ..-++..|+..+=...+++|+++|..|.+.
T Consensus       137 ~V~Di------a--DAmil~rLf~~l~~~gvvlVaTSN~~P~~L  172 (362)
T PF03969_consen  137 QVTDI------A--DAMILKRLFEALFKRGVVLVATSNRPPEDL  172 (362)
T ss_pred             eccch------h--HHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence            54432      1  124456666666666788888877776653

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK10536 hypothetical protein; Provisional

Probab=97.78  E-value=0.0001  Score=66.62  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..+++.||+|||||++|.+++...
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~~   98 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAEA   98 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999853

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.77  E-value=0.00013  Score=63.02  Aligned_cols=23  Identities=39%  Similarity=0.754  Sum_probs=21.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .++|.||||+||||+|+.|++.+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999984

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.77  E-value=7.7e-05  Score=66.40  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=20.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la  227 (445)
                      .+..+||||+||||||++|+.++
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcC
Confidence            45679999999999999999986

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.76  E-value=9.1e-05  Score=62.26  Aligned_cols=70  Identities=19%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCC-cccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 013316           37 PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI  111 (445)
Q Consensus        37 ~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g-~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~  111 (445)
                      +.++|.+|. +||||++.|+..|..+.+.||+.+    | +.|...|..|.+++.+|-..|..+.+..|.++-.+-
T Consensus         2 e~~in~rD~-fgWTalmcaa~eg~~eavsyllgr----g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDA-FGWTALMCAAMEGSNEAVSYLLGR----GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhh-hcchHHHHHhhhcchhHHHHHhcc----CcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            356888887 699999999999999999999985    5 778888999999999999999999999998874443

>PF14516 AAA_35: AAA-like domain

Probab=97.75  E-value=0.0005  Score=65.94  Aligned_cols=139  Identities=19%  Similarity=0.214  Sum_probs=81.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccccc------------------CC----------
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV------------------GH----------  256 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------g~----------  256 (445)
                      +...+.+.||..+|||++...+.+.+...+.    ..+.+++..+.+..+                  +-          
T Consensus        30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~----~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~  105 (331)
T PF14516_consen   30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGY----RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDE  105 (331)
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHHHCCC----EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence            4567899999999999999999888876443    455555554322100                  10          


Q ss_pred             ---chhHHHHHHHH------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------CcEEEEEecCchhH
Q 013316          257 ---TGPKTRRRIKE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAGYSEPM  320 (445)
Q Consensus       257 ---~~~~~~~~~~~------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~i~a~~~~~~  320 (445)
                         +.......|++      .++-||+|||||.+....     ....+.+..|-...+.       .++.+|++......
T Consensus       106 ~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~  180 (331)
T PF14516_consen  106 EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY  180 (331)
T ss_pred             hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence               11122222322      245899999999998632     2222444333333222       34666666543322


Q ss_pred             HHHHhhC-cccccccccceeCCCCCHHHHHHHHHHH
Q 013316          321 KRVIASN-EGFCRRVTKFFHFNDFNSEELAKILHIK  355 (445)
Q Consensus       321 ~~~~~~~-~~l~~R~~~~i~~~~~~~~~~~~il~~~  355 (445)
                      . ....+ .++  .+...|.++.++.+|+.++++.+
T Consensus       181 ~-~~~~~~SPF--NIg~~i~L~~Ft~~ev~~L~~~~  213 (331)
T PF14516_consen  181 I-ILDINQSPF--NIGQPIELPDFTPEEVQELAQRY  213 (331)
T ss_pred             c-ccCCCCCCc--ccccceeCCCCCHHHHHHHHHhh
Confidence            2 11111 222  44578899999999999988765

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.75  E-value=4.4e-05  Score=61.88  Aligned_cols=28  Identities=32%  Similarity=0.541  Sum_probs=24.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..+++|++|-||||||+++..||..++-
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~   33 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGL   33 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence            4568999999999999999999977654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.73  E-value=5.7e-05  Score=77.22  Aligned_cols=120  Identities=21%  Similarity=0.222  Sum_probs=86.1

Q ss_pred             CchHhHHHHHcCCHHHHHHHHhhCCC---CcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           13 KPATIHGCAQSGDLLAFQRLLRENPS---LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        13 ~~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      +.-....||..|+...|++.+.....   ++|..|. .|+++||.|..+.|.+++++|++++      +..     ..+|
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~-lGr~al~iai~nenle~~eLLl~~~------~~~-----gdAL   92 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP-LGRLALHIAIDNENLELQELLLDTS------SEE-----GDAL   92 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccCh-HhhhceecccccccHHHHHHHhcCc------ccc-----chHH
Confidence            34457789999999999999887544   6788886 7999999999999999999999862      111     1366


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCC----------cccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFI----------EAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  145 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~----------~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~  145 (445)
                      .+|++.|..++|+.++.+-...          ...-..+.||+ .+|+..++.+|+++|+..++..
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPl-iLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPL-MLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHH-HHHHHhcchHHHHHHHHcCCCC
Confidence            6777777777777777542221          12223456777 7777777777777777776553

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.73  E-value=4.6e-05  Score=63.99  Aligned_cols=67  Identities=27%  Similarity=0.399  Sum_probs=62.4

Q ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        75 g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      +.++|.+|.+|+||++.|+..|+.+.+.+|+.+| +.+...|..|.+++ .+|...+..+.+..|.+.-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaa-qlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAA-QLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHH-HHHHhcChHHHHHHHHHHh
Confidence            4578999999999999999999999999999999 89999999999999 8899999999999997764

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.72  E-value=5.9e-05  Score=75.32  Aligned_cols=56  Identities=21%  Similarity=0.305  Sum_probs=42.3

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      -|+++.|++++++++.+.+......       +   .....-++|.||||+|||++|+.|++.+..
T Consensus        74 fF~d~yGlee~ieriv~~l~~Aa~g-------l---~~~~~IL~LvGPpG~GKSsLa~~la~~le~  129 (644)
T PRK15455         74 AFEEFYGMEEAIEQIVSYFRHAAQG-------L---EEKKQILYLLGPVGGGKSSLAERLKSLMER  129 (644)
T ss_pred             chhcccCcHHHHHHHHHHHHHHHHh-------c---CCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence            3567999999999988866433211       1   123457889999999999999999998865

>PRK10867 signal recognition particle protein; Provisional

Probab=97.72  E-value=0.00042  Score=68.17  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=25.2

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      .+|..++|.||+|+||||++..+|..+...
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~  127 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKK  127 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence            456678899999999999999999877653

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.0032  Score=61.20  Aligned_cols=78  Identities=13%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CCCCCeEEeeccccc--------cc------ccCCchhHHHHHHHHc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQRTDLV--------GE------FVGHTGPKTRRRIKEA  268 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~~~~~~~~~~~~l~--------~~------~~g~~~~~~~~~~~~a  268 (445)
                      .+..++|+||+|+||||++..+|..+.....  -.+..++..++-...        ..      ...+....+.+.+...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            4668999999999999999999987753210  011123333331100        11      1123445555555444


Q ss_pred             -cCcEEEEcCccccc
Q 013316          269 -EGGILFVDEAYRLI  282 (445)
Q Consensus       269 -~~~il~lDEid~l~  282 (445)
                       ..-+|+||++....
T Consensus       253 ~~~DlVLIDTaGr~~  267 (388)
T PRK12723        253 KDFDLVLVDTIGKSP  267 (388)
T ss_pred             CCCCEEEEcCCCCCc
Confidence             44799999997765

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=97.68  E-value=0.00066  Score=60.36  Aligned_cols=135  Identities=5%  Similarity=-0.053  Sum_probs=89.5

Q ss_pred             CCeeEeecCCC-CchhHHHHHHHHHHHHcCC--CCCCCeEEeeccccc---ccccCCchhHHHHHHHHc-------cCcE
Q 013316          206 PPHMAFLGNPG-TGKTMVARILGRLLYMVGI--LPTDRVTEVQRTDLV---GEFVGHTGPKTRRRIKEA-------EGGI  272 (445)
Q Consensus       206 ~~~vll~Gp~G-tGKt~~A~~la~~~~~~~~--~~~~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~a-------~~~i  272 (445)
                      ...-||.|..+ +||..++..+++.+....+  -....+..+.+..-.   +..+  .-..+|++.+..       ...|
T Consensus        15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KV   92 (263)
T PRK06581         15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKV   92 (263)
T ss_pred             hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEE
Confidence            45689999997 9999999999988865322  011123333322100   0111  233444444322       3479


Q ss_pred             EEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHH
Q 013316          273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK  350 (445)
Q Consensus       273 l~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~  350 (445)
                      ++|+++|.+..           ++.+.||+.+++  ...++|+.+++...     .-|.+++|| +.+.|+.|+..+..+
T Consensus        93 iII~~ae~mt~-----------~AANALLKtLEEPP~~t~fILit~~~~~-----LLpTIrSRC-q~i~~~~p~~~~~~e  155 (263)
T PRK06581         93 AIIYSAELMNL-----------NAANSCLKILEDAPKNSYIFLITSRAAS-----IISTIRSRC-FKINVRSSILHAYNE  155 (263)
T ss_pred             EEEechHHhCH-----------HHHHHHHHhhcCCCCCeEEEEEeCChhh-----CchhHhhce-EEEeCCCCCHHHHHH
Confidence            99999999987           888999999997  44555554443222     158899999 999999999988888


Q ss_pred             HHHHHHhcc
Q 013316          351 ILHIKMNNQ  359 (445)
Q Consensus       351 il~~~l~~~  359 (445)
                      ....++...
T Consensus       156 ~~~~~~~p~  164 (263)
T PRK06581        156 LYSQFIQPI  164 (263)
T ss_pred             HHHHhcccc
Confidence            888776543

>PHA02774 E1; Provisional

Probab=97.66  E-value=0.0011  Score=66.41  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=23.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..++|+||||||||++|-+|.+.++
T Consensus       435 nciv~~GPP~TGKS~fa~sL~~~L~  459 (613)
T PHA02774        435 NCLVIYGPPDTGKSMFCMSLIKFLK  459 (613)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999999874

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.65  E-value=3.6e-05  Score=62.16  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.8

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +++.||||+||||+|+.|++.++.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~   25 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGF   25 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            689999999999999999998753

...

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.65  E-value=0.00064  Score=60.06  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..++|.||+|+||||+.|.|+...
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            568899999999999999998755

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK08118 topology modulation protein; Reviewed

Probab=97.64  E-value=9.8e-05  Score=63.30  Aligned_cols=26  Identities=35%  Similarity=0.669  Sum_probs=23.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..|++.||||+||||+|+.|++.++.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~   27 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNI   27 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            36899999999999999999998876

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.63  E-value=0.00014  Score=62.29  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +++|+|+||+||||+.+.+.+.+..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~   25 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKK   25 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhc
Confidence            5899999999999999999999854

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13695 putative NTPase; Provisional

Probab=97.62  E-value=0.00094  Score=57.72  Aligned_cols=25  Identities=32%  Similarity=0.535  Sum_probs=22.0

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++|.|++|+||||+++.++..+..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~   26 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE   26 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999887653

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.62  E-value=0.00044  Score=75.61  Aligned_cols=133  Identities=17%  Similarity=0.245  Sum_probs=83.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccc-cCCchhHH----HHHHHH-ccCcEE
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEF-VGHTGPKT----RRRIKE-AEGGIL  273 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~------l~~~~-~g~~~~~~----~~~~~~-a~~~il  273 (445)
                      ..++|+.|.||+|||++..++|...+.       .++.++.|+      |.+.+ .++.+..+    ...+.. ..|+-+
T Consensus      1543 ~kpilLEGsPGVGKTSlItaLAr~tG~-------kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WV 1615 (4600)
T COG5271        1543 GKPILLEGSPGVGKTSLITALARKTGK-------KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWV 1615 (4600)
T ss_pred             CCceeecCCCCccHHHHHHHHHHHhcC-------ceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEE
Confidence            468999999999999999999999877       788888775      33332 22211111    112222 267899


Q ss_pred             EEcCccccccCCCCCCchhHHHHHHHHHhhccC----------------CcEEEEEecCchhHHHHH-hhCccccccccc
Q 013316          274 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------------GKVVVIFAGYSEPMKRVI-ASNEGFCRRVTK  336 (445)
Q Consensus       274 ~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~~~~i~a~~~~~~~~~~-~~~~~l~~R~~~  336 (445)
                      +|||+.-..           ..++.-|-..+|.                ..+.|.+|-++..-.--. ....++..|| .
T Consensus      1616 lLDEiNLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-s 1683 (4600)
T COG5271        1616 LLDEINLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-S 1683 (4600)
T ss_pred             EeehhhhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-h
Confidence            999994333           3566656555553                234555554433221000 0023466788 8


Q ss_pred             ceeCCCCCHHHHHHHHHHHHh
Q 013316          337 FFHFNDFNSEELAKILHIKMN  357 (445)
Q Consensus       337 ~i~~~~~~~~~~~~il~~~l~  357 (445)
                      ++.+..++.+++..|+.+.-.
T Consensus      1684 vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271        1684 VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred             eEEecccccchHHHHHHhhCC
Confidence            899999999999999876543

>TIGR00959 ffh signal recognition particle protein

Probab=97.60  E-value=0.0015  Score=64.25  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=24.2

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..|..++|.|++|+||||+|..+|..+.
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~  124 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLK  124 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3466788999999999999999998864

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.60  E-value=0.0012  Score=63.55  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....++|.||+|+||||++..|+..+.
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999998764

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=97.58  E-value=0.00014  Score=64.00  Aligned_cols=19  Identities=26%  Similarity=0.588  Sum_probs=13.6

Q ss_pred             cCcEEEEcCccccccCCCC
Q 013316          269 EGGILFVDEAYRLIPMQKA  287 (445)
Q Consensus       269 ~~~il~lDEid~l~~~~~~  287 (445)
                      .+++|+|||++.+.+.+..
T Consensus        79 ~~~liviDEa~~~~~~r~~   97 (193)
T PF05707_consen   79 KGSLIVIDEAQNFFPSRSW   97 (193)
T ss_dssp             TT-EEEETTGGGTSB---T
T ss_pred             CCcEEEEECChhhcCCCcc
Confidence            6899999999999998764

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.56  E-value=0.00019  Score=66.60  Aligned_cols=55  Identities=20%  Similarity=0.280  Sum_probs=50.2

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcC
Q 013316           14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW   70 (445)
Q Consensus        14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~   70 (445)
                      .--|++||+.|+.+.|++|+. .|.++|..|. ....||.+|+..||.++|++||+.
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~-fD~spL~lAsLcGHe~vvklLLen   91 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDR-FDSSPLYLASLCGHEDVVKLLLEN   91 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhc-ccccHHHHHHHcCcHHHHHHHHHc
Confidence            445899999999999999987 7999999997 578999999999999999999995

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.55  E-value=0.00043  Score=75.72  Aligned_cols=133  Identities=23%  Similarity=0.342  Sum_probs=85.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccccCCchhHH---HHHHHHc--cCcEE
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEFVGHTGPKT---RRRIKEA--EGGIL  273 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~------l~~~~~g~~~~~~---~~~~~~a--~~~il  273 (445)
                      ..-++|+.||+.+|||++...+|.+.+.       .|+.++.-.      .++.|+-.....+   ..++-+|  +|--|
T Consensus       887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh-------kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWI  959 (4600)
T COG5271         887 SNFPLLIQGPTSSGKTSMILYLARETGH-------KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWI  959 (4600)
T ss_pred             cCCcEEEecCCCCCcchHHHHHHHHhCc-------cEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEE
Confidence            4558999999999999999999999887       888887654      2333433222111   1234333  45678


Q ss_pred             EEcCccccccCCCCCCchhHHHHHHHHHhhccCCcE---------------EEEEecCchhHHHH--HhhCccccccccc
Q 013316          274 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---------------VVIFAGYSEPMKRV--IASNEGFCRRVTK  336 (445)
Q Consensus       274 ~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------------~~i~a~~~~~~~~~--~~~~~~l~~R~~~  336 (445)
                      +|||.. |+|          .+++..|-+++|+++-               +.+.||.+.+-..-  --...++|.|| .
T Consensus       960 VLDELN-LAp----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-l 1027 (4600)
T COG5271         960 VLDELN-LAP----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-L 1027 (4600)
T ss_pred             Eeeccc-cCc----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-H
Confidence            899983 333          3666677777765331               33444433221100  00135688899 8


Q ss_pred             ceeCCCCCHHHHHHHHHHHH
Q 013316          337 FFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       337 ~i~~~~~~~~~~~~il~~~l  356 (445)
                      .++|.....+|+..|++..+
T Consensus      1028 E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271        1028 EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred             hhhcccCcHHHHHHHHhccC
Confidence            89999999999999998654

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.55  E-value=0.00036  Score=62.31  Aligned_cols=38  Identities=26%  Similarity=0.361  Sum_probs=27.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      ..-++++||||+|||+++..++......+    ...+.++..
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g----~~v~yi~~e   49 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVNAARQG----KKVVYIDTE   49 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECC
Confidence            34578999999999999998887765432    245555543

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.55  E-value=0.00043  Score=60.81  Aligned_cols=26  Identities=31%  Similarity=0.275  Sum_probs=19.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .-+.+.||+|||||++|-+.|..+-.
T Consensus        20 ~~v~~~G~AGTGKT~LA~a~Al~~v~   45 (205)
T PF02562_consen   20 DLVIVNGPAGTGKTFLALAAALELVK   45 (205)
T ss_dssp             SEEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            36888999999999999988876644

; GO: 0005524 ATP binding; PDB: 3B85_A.

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.54  E-value=0.0015  Score=64.22  Aligned_cols=119  Identities=21%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM  284 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~  284 (445)
                      .++++||.+|||||+.+.+.+.+..       .++.++..+.......  -......+.+.   +...+|||||+.+-  
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~-------~~iy~~~~d~~~~~~~--l~d~~~~~~~~~~~~~~yifLDEIq~v~--  107 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLE-------EIIYINFDDLRLDRIE--LLDLLRAYIELKEREKSYIFLDEIQNVP--  107 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCc-------ceEEEEecchhcchhh--HHHHHHHHHHhhccCCceEEEecccCch--
Confidence            7889999999999999777766543       2455555554332211  11222222222   33699999997664  


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCcE-EEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHH
Q 013316          285 QKADDKDYGIEALEEIMSVMDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK  350 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~~~~~-~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~  350 (445)
                                .-...+-...|.+.. ++|.+++.....  -..-+.|..|. ..+.+.|+|-.|...
T Consensus       108 ----------~W~~~lk~l~d~~~~~v~itgsss~ll~--~~~~~~L~GR~-~~~~l~PlSF~Efl~  161 (398)
T COG1373         108 ----------DWERALKYLYDRGNLDVLITGSSSSLLS--KEISESLAGRG-KDLELYPLSFREFLK  161 (398)
T ss_pred             ----------hHHHHHHHHHccccceEEEECCchhhhc--cchhhhcCCCc-eeEEECCCCHHHHHh
Confidence                      233444555565543 333333222221  11245677785 888999999888754

>PRK07261 topology modulation protein; Provisional

Probab=97.54  E-value=0.00019  Score=61.87  Aligned_cols=101  Identities=18%  Similarity=0.225  Sum_probs=57.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA  287 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~  287 (445)
                      .+++.|+||+||||+|+.|+..++.       +++..+.-.....+.                      +.         
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~-------~~i~~D~~~~~~~~~----------------------~~---------   43 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNC-------PVLHLDTLHFQPNWQ----------------------ER---------   43 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC-------CeEecCCEEeccccc----------------------cC---------
Confidence            4789999999999999999887643       433322110000000                      00         


Q ss_pred             CCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHh
Q 013316          288 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN  357 (445)
Q Consensus       288 ~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~  357 (445)
                         + ..+....+...+..+. .||=.++....      .+....++|.+|.+..|...-+..+++..+.
T Consensus        44 ---~-~~~~~~~~~~~~~~~~-wIidg~~~~~~------~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~  102 (171)
T PRK07261         44 ---D-DDDMIADISNFLLKHD-WIIDGNYSWCL------YEERMQEADQIIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             ---C-HHHHHHHHHHHHhCCC-EEEcCcchhhh------HHHHHHHCCEEEEEcCCHHHHHHHHHHHHHH
Confidence               0 0122333333444454 44434333212      1233447788899998888888888888775

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=97.53  E-value=0.00022  Score=69.20  Aligned_cols=23  Identities=39%  Similarity=0.535  Sum_probs=21.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+++.|.||||||.+|-.++..+
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            47889999999999999999988

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PRK14532 adenylate kinase; Provisional

Probab=97.53  E-value=0.00049  Score=60.32  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=27.9

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  252 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~  252 (445)
                      ++++.||||+||||+|+.||+.++         +..++..++..+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g---------~~~is~~d~lr~   37 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG---------MVQLSTGDMLRA   37 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---------CeEEeCcHHHHH
Confidence            589999999999999999998764         344566555443

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.52  E-value=0.00085  Score=58.82  Aligned_cols=75  Identities=21%  Similarity=0.268  Sum_probs=47.2

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHc-CCCCCCCeEEeeccc-ccccccCCch----------------hHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTD-LVGEFVGHTG----------------PKTRRRI  265 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~-~~~~~~~~~~~~~~~-l~~~~~g~~~----------------~~~~~~~  265 (445)
                      ....+.|+.|||||||||+.|-||..+..- ..+....+.-++.++ +.+...|...                .-+-.++
T Consensus       135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI  214 (308)
T COG3854         135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI  214 (308)
T ss_pred             cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence            345689999999999999999999987542 122222444455443 3333444311                1122345


Q ss_pred             HHccCcEEEEcCc
Q 013316          266 KEAEGGILFVDEA  278 (445)
Q Consensus       266 ~~a~~~il~lDEi  278 (445)
                      ++..+-|+++|||
T Consensus       215 rsm~PEViIvDEI  227 (308)
T COG3854         215 RSMSPEVIIVDEI  227 (308)
T ss_pred             HhcCCcEEEEecc
Confidence            5556789999999

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.51  E-value=8.6e-05  Score=64.14  Aligned_cols=28  Identities=29%  Similarity=0.622  Sum_probs=25.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ++..++|+|+||||||++|+.+++.++.
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~   30 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY   30 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4668999999999999999999999865

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.50  E-value=0.00065  Score=61.25  Aligned_cols=28  Identities=32%  Similarity=0.603  Sum_probs=24.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.||||+||||+|+.|++.++.
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~   32 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENL   32 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3466999999999999999999998754

>PLN02200 adenylate kinase family protein

Probab=97.49  E-value=0.00033  Score=63.55  Aligned_cols=39  Identities=23%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      ...+..+++.||||+||||+|+.|++.++.         ..++.+++.
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~---------~his~gdll   78 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFGF---------KHLSAGDLL   78 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCC---------eEEEccHHH
Confidence            445667889999999999999999987643         346665554

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.48  E-value=0.00035  Score=66.92  Aligned_cols=29  Identities=14%  Similarity=0.235  Sum_probs=24.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ....-.+++||||||||++|+.|++....
T Consensus       167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~  195 (416)
T PRK09376        167 GKGQRGLIVAPPKAGKTVLLQNIANSITT  195 (416)
T ss_pred             ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence            34557899999999999999999998865

>PHA02624 large T antigen; Provisional

Probab=97.47  E-value=0.0016  Score=65.68  Aligned_cols=56  Identities=18%  Similarity=0.079  Sum_probs=37.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCchhHHHHHHHHccCcEEEEcCcc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAY  279 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~a~~~il~lDEid  279 (445)
                      ..++|+||||||||+++.+|.+.++-       ..+.++++.-.+. |.|          =.+...+.+||++-
T Consensus       432 ~~il~~GPpnTGKTtf~~sLl~~L~G-------~vlsVNsPt~ks~FwL~----------pl~D~~~~l~dD~t  488 (647)
T PHA02624        432 RYWLFKGPVNSGKTTLAAALLDLCGG-------KSLNVNCPPDKLNFELG----------CAIDQFMVVFEDVK  488 (647)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC-------eEEEeeCCcchhHHHhh----------hhhhceEEEeeecc
Confidence            47999999999999999999999843       4444654432111 111          11244688889884

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.47  E-value=0.00084  Score=65.05  Aligned_cols=106  Identities=15%  Similarity=0.189  Sum_probs=60.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc------ccC----------C-chhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE  267 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~------~~g----------~-~~~~~~~~~~~  267 (445)
                      +..-++++||||+|||+++..++..+...+    .+++.++...-..+      -+|          + .-..+.+.++.
T Consensus        81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g----~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~  156 (372)
T cd01121          81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE  156 (372)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence            344688999999999999999988775432    24544443321110      111          1 11233444455


Q ss_pred             ccCcEEEEcCccccccCCCCC-Cc--hhHHHHHHHHHhhccCCcEEEEEe
Q 013316          268 AEGGILFVDEAYRLIPMQKAD-DK--DYGIEALEEIMSVMDGGKVVVIFA  314 (445)
Q Consensus       268 a~~~il~lDEid~l~~~~~~~-~~--~~~~~~~~~ll~~~~~~~~~~i~a  314 (445)
                      .+..+|+||+|..+.....++ .+  ...++....|.+...+..+.+|+.
T Consensus       157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilv  206 (372)
T cd01121         157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIV  206 (372)
T ss_pred             cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence            567899999999986533211 11  222344555666655555555554

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria

Probab=97.47  E-value=0.024  Score=55.37  Aligned_cols=109  Identities=20%  Similarity=0.333  Sum_probs=70.9

Q ss_pred             CcEEEEcCccccccCCCCCCchh-HHHHHHHHHhhccC------CcEEEEEecCchhHH---HHHhhCccccccc-----
Q 013316          270 GGILFVDEAYRLIPMQKADDKDY-GIEALEEIMSVMDG------GKVVVIFAGYSEPMK---RVIASNEGFCRRV-----  334 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~-~~~~~~~ll~~~~~------~~~~~i~a~~~~~~~---~~~~~~~~l~~R~-----  334 (445)
                      |-+|+|||++.+..-+.    +. -....+.|++.+++      ..+.+++++|+.-+.   +-+.+-|+|.+|+     
T Consensus       240 GLlI~lDE~e~l~kl~~----~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~  315 (416)
T PF10923_consen  240 GLLILLDELENLYKLRN----DQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFF  315 (416)
T ss_pred             ceEEEEechHHHHhcCC----hHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccc
Confidence            46999999999976443    22 33556667766654      346777888777662   2222335555543     


Q ss_pred             ---------ccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316          335 ---------TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  387 (445)
Q Consensus       335 ---------~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  387 (445)
                               ..+|.+++++++++.+++.....-+...     +.....++++.+..++....
T Consensus       316 ~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~-----~~~~~~v~d~~l~~~~~~~~  372 (416)
T PF10923_consen  316 ADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEA-----YGYESRVDDEELKAFAQHVA  372 (416)
T ss_pred             ccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhh-----CCCCCCCCHHHHHHHHHHHH
Confidence                     3467899999999999988755443322     23346778888887776665

Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.46  E-value=0.00016  Score=63.06  Aligned_cols=62  Identities=27%  Similarity=0.307  Sum_probs=36.1

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      ++|.++..+++...+. .            .....+..++++||+|+|||++.+.+...+...+.    .++.+++...
T Consensus         2 fvgR~~e~~~l~~~l~-~------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~----~~~~~~~~~~   63 (185)
T PF13191_consen    2 FVGREEEIERLRDLLD-A------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGG----YVISINCDDS   63 (185)
T ss_dssp             -TT-HHHHHHHHHTTG-G------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT------EEEEEEETT
T ss_pred             CCCHHHHHHHHHHHHH-H------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC----EEEEEEEecc
Confidence            5777777777776443 1            12445678999999999999999999888877421    2555555443

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.46  E-value=0.00085  Score=66.87  Aligned_cols=106  Identities=16%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc------cCC-----------chhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF------VGH-----------TGPKTRRRIKE  267 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~------~g~-----------~~~~~~~~~~~  267 (445)
                      +...++++||||+|||+++..++......+    ..++.++..+-..++      +|.           .-..+.+.+++
T Consensus        79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g----~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~  154 (446)
T PRK11823         79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAG----GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE  154 (446)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence            344688999999999999999988765322    245555543311110      111           12233344444


Q ss_pred             ccCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccCCcEEEEEe
Q 013316          268 AEGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGGKVVVIFA  314 (445)
Q Consensus       268 a~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~i~a  314 (445)
                      ....+|+||++..+....-.+   +.....+....|.....+..+.+++.
T Consensus       155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv  204 (446)
T PRK11823        155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLV  204 (446)
T ss_pred             hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            466899999999887532211   11122344555666666555555554

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.42  E-value=0.0011  Score=55.38  Aligned_cols=129  Identities=14%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             ecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhH-HHHHHH---HccCcEEEEcCccccccCCCC
Q 013316          212 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK-TRRRIK---EAEGGILFVDEAYRLIPMQKA  287 (445)
Q Consensus       212 ~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~---~a~~~il~lDEid~l~~~~~~  287 (445)
                      .+.+||||||+|.+|++.++..+-+.+.        ++.++    .... +..+++   +....++|.|-=......|  
T Consensus         5 IAtiGCGKTTva~aL~~LFg~wgHvQnD--------nI~~k----~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR--   70 (168)
T PF08303_consen    5 IATIGCGKTTVALALSNLFGEWGHVQND--------NITGK----RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER--   70 (168)
T ss_pred             ecCCCcCHHHHHHHHHHHcCCCCccccC--------CCCCC----CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH--
Confidence            5789999999999999998743433332        33222    1112 222333   3456899998543332211  


Q ss_pred             CCchhHHHHHHHHHhhcc-----CCcEEEEEecCch--hHHHHHhh-Ccccccccc--cceeCCCCCHHHHHHHHHHHHh
Q 013316          288 DDKDYGIEALEEIMSVMD-----GGKVVVIFAGYSE--PMKRVIAS-NEGFCRRVT--KFFHFNDFNSEELAKILHIKMN  357 (445)
Q Consensus       288 ~~~~~~~~~~~~ll~~~~-----~~~~~~i~a~~~~--~~~~~~~~-~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~  357 (445)
                            .++.+.+.+.-.     ...+.+|+-....  +...+... ...+..|=|  +.|....++......|+..|++
T Consensus        71 ------~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~  144 (168)
T PF08303_consen   71 ------KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIK  144 (168)
T ss_pred             ------HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHH
Confidence                  122222222222     1244455533211  22222111 133444554  6678888888888889999888


Q ss_pred             ccc
Q 013316          358 NQT  360 (445)
Q Consensus       358 ~~~  360 (445)
                      +..
T Consensus       145 rfe  147 (168)
T PF08303_consen  145 RFE  147 (168)
T ss_pred             hcC
Confidence            764

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.40  E-value=0.00083  Score=59.39  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=22.2

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      -++|.||+|+||||+++++...+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            5889999999999999998888764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF13245 AAA_19: Part of AAA domain

Probab=97.40  E-value=0.00037  Score=50.93  Aligned_cols=26  Identities=42%  Similarity=0.655  Sum_probs=19.5

Q ss_pred             CCeeEeecCCCCchh-HHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKT-MVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt-~~A~~la~~~~  231 (445)
                      ...+++.|||||||| ++++.++....
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~   36 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELLA   36 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            344667999999999 66677776664

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=97.38  E-value=0.00079  Score=71.17  Aligned_cols=95  Identities=23%  Similarity=0.292  Sum_probs=55.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc----ccccccCCchhHHHHHHH-----------H--c
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGEFVGHTGPKTRRRIK-----------E--A  268 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~----l~~~~~g~~~~~~~~~~~-----------~--a  268 (445)
                      ...+++.|+||||||++++++...+...+.  ..++.-+.++.    -+.+..|.....+.+.+.           +  .
T Consensus       338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~--~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~  415 (720)
T TIGR01448       338 HKVVILTGGPGTGKTTITRAIIELAEELGG--LLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPI  415 (720)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCC--CceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccc
Confidence            347889999999999999999988876431  01333333332    111122322222222221           1  2


Q ss_pred             cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-cEEEEE
Q 013316          269 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIF  313 (445)
Q Consensus       269 ~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~  313 (445)
                      ...+|++||+..+..           .....|++.+..+ ++++++
T Consensus       416 ~~~llIvDEaSMvd~-----------~~~~~Ll~~~~~~~rlilvG  450 (720)
T TIGR01448       416 DCDLLIVDESSMMDT-----------WLALSLLAALPDHARLLLVG  450 (720)
T ss_pred             cCCEEEEeccccCCH-----------HHHHHHHHhCCCCCEEEEEC
Confidence            347999999966654           5667777777653 444443

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PRK06762 hypothetical protein; Provisional

Probab=97.38  E-value=0.00037  Score=59.77  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=22.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      |.-++|.|+||+||||+|+.+++.++
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~   27 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLG   27 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999998873

>PRK00625 shikimate kinase; Provisional

Probab=97.37  E-value=0.00015  Score=62.40  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=23.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +|+|.|.||+|||++++.+|+.++.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~   26 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSL   26 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999999876

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.36  E-value=0.00059  Score=55.53  Aligned_cols=39  Identities=23%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      +...++|.|+.|+|||+++|.+++.++....+.+..|.-
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~l   59 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTL   59 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeee
Confidence            345788999999999999999999987644444444433

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK13947 shikimate kinase; Provisional

Probab=97.32  E-value=0.00019  Score=61.83  Aligned_cols=25  Identities=32%  Similarity=0.523  Sum_probs=23.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ++++.|+||||||++|+.+|+.++.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~   27 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSF   27 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            6999999999999999999999876

>PLN02674 adenylate kinase

Probab=97.32  E-value=0.00058  Score=61.85  Aligned_cols=28  Identities=21%  Similarity=0.456  Sum_probs=24.4

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .++..++|.||||+||+|.|+.|++.++
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~   56 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYC   56 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            3456799999999999999999999764

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.32  E-value=0.00033  Score=63.92  Aligned_cols=29  Identities=14%  Similarity=0.222  Sum_probs=25.1

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .....++|+||+|+|||++++.+++.+..
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            45568999999999999999999987754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.31  E-value=0.00021  Score=75.00  Aligned_cols=89  Identities=25%  Similarity=0.290  Sum_probs=76.7

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..|.|+||.|+..|..-....|| ..++++|..+. .|++|+|.+...|+...+..+++    .|++.++.+..|.+|++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll-~~ga~vn~~d~-~g~~plh~~~~~g~~~~~~~ll~----~~a~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLL-QNGADVNALDS-KGRTPLHHATASGHTSIACLLLK----RGADPNAFDPDGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHH-hcCCcchhhhc-cCCCcchhhhhhcccchhhhhcc----ccccccccCccCcchhh
Confidence            45799999999999987776555 67899999996 89999999999999999999999    48899999999999999


Q ss_pred             HHHHcCCHHHHHHHH
Q 013316           91 MAAKNGCNEAAKLLL  105 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll  105 (445)
                      +|....+.+.+-++.
T Consensus       728 ~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  728 IAMEAANADIVLLLR  742 (785)
T ss_pred             HHhhhccccHHHHHh
Confidence            998776666665554

>PRK03839 putative kinase; Provisional

Probab=97.30  E-value=0.00019  Score=62.51  Aligned_cols=25  Identities=40%  Similarity=0.640  Sum_probs=23.0

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|+|.|+||+||||+|+.+|+.++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~   26 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGY   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4889999999999999999999865

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.28  E-value=0.0009  Score=56.06  Aligned_cols=41  Identities=34%  Similarity=0.442  Sum_probs=32.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG  251 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~  251 (445)
                      ..++|+|.||+||||+|+++.+.+...+.    +.+.++...+..
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~----~~~~LDgD~lR~   43 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFARGI----KVYLLDGDNLRH   43 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTS-----EEEEEHHHHCT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEecCcchhh
Confidence            46889999999999999999999987554    677777665543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=97.27  E-value=0.0013  Score=53.84  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=21.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +++++||+|+|||+++-.++..+..
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~~   26 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLD   26 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHHh
Confidence            6899999999999998888877754

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PRK13808 adenylate kinase; Provisional

Probab=97.26  E-value=0.0021  Score=60.80  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=22.3

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|+|+||||+|||++++.|++.++.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl   26 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGI   26 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999988743

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.26  E-value=0.004  Score=54.77  Aligned_cols=28  Identities=32%  Similarity=0.465  Sum_probs=23.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      |..++|.||+|+||||.+-.+|..+...
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~   28 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLK   28 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence            4568899999999999998898888754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PLN02459 probable adenylate kinase

Probab=97.25  E-value=0.0015  Score=59.48  Aligned_cols=27  Identities=44%  Similarity=0.620  Sum_probs=23.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .+..++|.||||+||+|+|+.+++.++
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~   54 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLG   54 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            445789999999999999999999764

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.24  E-value=0.00023  Score=58.75  Aligned_cols=25  Identities=44%  Similarity=0.595  Sum_probs=22.5

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      -+.+.|||||||||+|+.||..++.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl   26 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGL   26 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCC
Confidence            3668999999999999999999876

>PRK13948 shikimate kinase; Provisional

Probab=97.23  E-value=0.00039  Score=60.31  Aligned_cols=44  Identities=25%  Similarity=0.404  Sum_probs=33.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH  256 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  256 (445)
                      .++.+++|.|.+|+|||++++.+|+.++.       +|+..+  .++.+.+|.
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~D--~~ie~~~g~   51 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALML-------HFIDTD--RYIERVTGK   51 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEECC--HHHHHHHhC
Confidence            35678999999999999999999999876       776443  444444443

>PRK14974 cell division protein FtsY; Provisional

Probab=97.22  E-value=0.0042  Score=59.23  Aligned_cols=30  Identities=37%  Similarity=0.515  Sum_probs=25.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .|..++|.||||+||||++..+|..+...+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g  168 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG  168 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            466789999999999999999998886643

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.22  E-value=0.0015  Score=54.58  Aligned_cols=27  Identities=30%  Similarity=0.564  Sum_probs=23.3

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+.-.++++||+|+||+++-|.+|...
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            345578999999999999999999865

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.21  E-value=0.00029  Score=59.52  Aligned_cols=25  Identities=36%  Similarity=0.663  Sum_probs=22.8

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +++++|+||+|||++|+.+++.++.
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~   25 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGL   25 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998865

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.20  E-value=0.0014  Score=56.06  Aligned_cols=99  Identities=15%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----------------c-cCCchhHHHHHHHHc-cC
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------------F-VGHTGPKTRRRIKEA-EG  270 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~----------------~-~g~~~~~~~~~~~~a-~~  270 (445)
                      ++++|+||+|||++|..++...+.       +.+.+..+.-.+.                | ..+....+.+.+.+. .+
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~-------~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~   74 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGG-------PVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG   74 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence            588999999999999999876322       4444433321100                0 122445666777554 45


Q ss_pred             cEEEEcCccccccCCCCCCc----hhHHHHHHHHHhhccCCcEEEEEe
Q 013316          271 GILFVDEAYRLIPMQKADDK----DYGIEALEEIMSVMDGGKVVVIFA  314 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~i~a  314 (445)
                      .+|+||-+..+...--..+.    +...+.+..|+..+......+|+.
T Consensus        75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viV  122 (169)
T cd00544          75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILV  122 (169)
T ss_pred             CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEE
Confidence            68999988777653321111    111234455777665544333333

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK14529 adenylate kinase; Provisional

Probab=97.19  E-value=0.0015  Score=58.41  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=22.9

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++|.||||+||||.|+.|++.++.
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~   26 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDL   26 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            5889999999999999999999865

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.19  E-value=0.00025  Score=60.00  Aligned_cols=26  Identities=27%  Similarity=0.566  Sum_probs=24.5

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+++|.|++|+||||+.|.+|+.++.
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~   28 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNL   28 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence            57999999999999999999999987

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.19  E-value=0.0021  Score=55.37  Aligned_cols=25  Identities=36%  Similarity=0.550  Sum_probs=23.2

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      -++|+|+||+|||++|+-+++++..
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHH
Confidence            4789999999999999999999976

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.18  E-value=0.00021  Score=59.50  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=20.7

Q ss_pred             eEeecCCCCchhHHHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      +++.||||+||||+|+.++..+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            68899999999999999997754

...

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.18  E-value=0.0003  Score=57.24  Aligned_cols=22  Identities=41%  Similarity=0.687  Sum_probs=20.6

Q ss_pred             eEeecCCCCchhHHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      |+|.|+|||||||+|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999986

...

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.18  E-value=0.0044  Score=54.98  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=21.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ...++++||.|+|||++.+.|+..
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHH
Confidence            356899999999999999999954

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.17  E-value=0.0058  Score=58.83  Aligned_cols=29  Identities=21%  Similarity=0.263  Sum_probs=25.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      .+..++|.||+|+||||++..||..+...
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~  268 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK  268 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            35689999999999999999999888643

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.17  E-value=0.0011  Score=56.91  Aligned_cols=94  Identities=11%  Similarity=0.122  Sum_probs=51.8

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc-----cc-----------c-cCCchhHHHHHHHH--c
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GE-----------F-VGHTGPKTRRRIKE--A  268 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~-----~~-----------~-~g~~~~~~~~~~~~--a  268 (445)
                      .+++.|+||+|||++|..++..++.       +++.+......     ..           | .-+....+.++++.  .
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~-------~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~   75 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGL-------QVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA   75 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCC-------CcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence            5889999999999999999987643       22222221110     00           0 01123345566655  2


Q ss_pred             cCcEEEEcCccccccCCCCCCc-hhHHHHHHHHHhhccCCc
Q 013316          269 EGGILFVDEAYRLIPMQKADDK-DYGIEALEEIMSVMDGGK  308 (445)
Q Consensus       269 ~~~il~lDEid~l~~~~~~~~~-~~~~~~~~~ll~~~~~~~  308 (445)
                      .+.+++||-+..+..+.-..+. +...+.+..++..+....
T Consensus        76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~  116 (170)
T PRK05800         76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLP  116 (170)
T ss_pred             CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCC
Confidence            4578999988777542211011 112234455666665533

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.17  E-value=0.0016  Score=59.80  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.7

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHHc
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      |+|.|+||+||||+|+.+++.+...
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~   26 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEK   26 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            6899999999999999999998753

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.17  E-value=0.0077  Score=55.71  Aligned_cols=27  Identities=22%  Similarity=0.115  Sum_probs=22.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....++|+||+|+||||+.+++...+.
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            345689999999999999998877664

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=97.17  E-value=0.0013  Score=69.79  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=44.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCCchhHHHHHH---HH-----ccCcEEE
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRI---KE-----AEGGILF  274 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~~~~~~~~~~---~~-----a~~~il~  274 (445)
                      ..++|.|+||||||++++++...+...+.    .+..+.++...    ....|.....+.+.+   ..     ....+|+
T Consensus       369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~----~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llI  444 (744)
T TIGR02768       369 DIAVVVGRAGTGKSTMLKAAREAWEAAGY----RVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLV  444 (744)
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHHHhCCC----eEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEE
Confidence            46789999999999999999888765432    45555444322    222232222222221   11     2347999


Q ss_pred             EcCcccccc
Q 013316          275 VDEAYRLIP  283 (445)
Q Consensus       275 lDEid~l~~  283 (445)
                      +||+-.+..
T Consensus       445 vDEasMv~~  453 (744)
T TIGR02768       445 IDEAGMVGS  453 (744)
T ss_pred             EECcccCCH
Confidence            999966653

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.17  E-value=0.00035  Score=60.97  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=26.5

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG  251 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~  251 (445)
                      ++++||||+||||+|+.|++.++         +..++.++++.
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~---------~~~is~~d~lr   35 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFG---------FTHLSAGDLLR   35 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---------CeEEECChHHH
Confidence            68899999999999999998764         34555555543

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.17  E-value=0.0027  Score=57.42  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=27.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      ..-++++||||||||++|..++......+    ..++.++..
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~----~~v~yi~~e   60 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEAAKNG----KKVIYIDTE   60 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEECC
Confidence            34578999999999999999988765432    245555554

>TIGR02012 tigrfam_recA protein RecA

Probab=97.16  E-value=0.0026  Score=60.05  Aligned_cols=106  Identities=17%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc----cccC-----------CchhH----HHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVG-----------HTGPK----TRRRIK  266 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~----~~~g-----------~~~~~----~~~~~~  266 (445)
                      ..-++++||||||||++|-.++......+    ++++.++......    +-+|           .+...    +..+++
T Consensus        55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g----~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~  130 (321)
T TIGR02012        55 GRIIEIYGPESSGKTTLALHAIAEAQKAG----GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR  130 (321)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcC----CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence            33577999999999999988776665432    2555554432110    0011           01111    122233


Q ss_pred             HccCcEEEEcCccccccCCC--CC---C-chhHH----HHHHHHHhhccCCcEEEEEec
Q 013316          267 EAEGGILFVDEAYRLIPMQK--AD---D-KDYGI----EALEEIMSVMDGGKVVVIFAG  315 (445)
Q Consensus       267 ~a~~~il~lDEid~l~~~~~--~~---~-~~~~~----~~~~~ll~~~~~~~~~~i~a~  315 (445)
                      +....+|+||-+-.+.++..  +.   . .....    +.+..|...+....+.+|+++
T Consensus       131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN  189 (321)
T TIGR02012       131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN  189 (321)
T ss_pred             ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            33458999999998886421  10   0 01111    234445555566777777764

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.15  E-value=0.0029  Score=57.27  Aligned_cols=104  Identities=20%  Similarity=0.242  Sum_probs=57.7

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHc-CCCCCCCeEEeeccc----cccc-------------------------c
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTD----LVGE-------------------------F  253 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~-~~~~~~~~~~~~~~~----l~~~-------------------------~  253 (445)
                      .....+|++||||||||+++..++...-.. +.    +++.++...    +...                         .
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~   92 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER   92 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence            345578999999999999998766544222 22    444444322    0000                         0


Q ss_pred             cC---Cc----hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEe
Q 013316          254 VG---HT----GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFA  314 (445)
Q Consensus       254 ~g---~~----~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a  314 (445)
                      .+   ..    ...+.+.+++.+..+++||-+..+....   +.......+..|...+.+..++++++
T Consensus        93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~---~~~~~r~~l~~l~~~l~~~~~t~llt  157 (226)
T PF06745_consen   93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD---DPEELRRFLRALIKFLKSRGVTTLLT  157 (226)
T ss_dssp             ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS---SGGGHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC---CHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            00   01    1233445555567899999998882211   13334456677777776655544444

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK05973 replicative DNA helicase; Provisional

Probab=97.15  E-value=0.011  Score=53.36  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=22.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+...+++.|+||+|||++|-.++.....
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~   90 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVEAMK   90 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            34456889999999999999888776543

>PRK13949 shikimate kinase; Provisional

Probab=97.14  E-value=0.00032  Score=60.29  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++|.|+||+|||++++.+|+.++.
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~   27 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGL   27 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999999875

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.12  E-value=0.0035  Score=56.73  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=20.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....++++||||||||++|..++..+
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~   48 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGF   48 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578899999999999985555444

>PRK06696 uridine kinase; Validated

Probab=97.11  E-value=0.0014  Score=59.10  Aligned_cols=42  Identities=29%  Similarity=0.311  Sum_probs=30.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      ..+.-|.+.|+||+||||+|+.|+..+...+.    +++.++..++
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~----~v~~~~~Ddf   61 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGR----PVIRASIDDF   61 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEeccccc
Confidence            34667889999999999999999999976432    4444444443

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.10  E-value=0.00048  Score=49.38  Aligned_cols=22  Identities=41%  Similarity=0.674  Sum_probs=20.5

Q ss_pred             eEeecCCCCchhHHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      +.+.|+||+|||++++.+++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PLN02840 tRNA dimethylallyltransferase

Probab=97.09  E-value=0.00089  Score=65.13  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCchhHHHHHHHHccCcEEEEcCccccccC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM  284 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~  284 (445)
                      ...++|.||+|+|||++|..|++.++.       +++.++.-.+... -+| +.+....-....+.  -+||-+   .+.
T Consensus        21 ~~vi~I~GptgsGKTtla~~La~~~~~-------~iis~Ds~qvYr~~~Ig-TaKpt~eE~~~V~H--hlidil---~p~   87 (421)
T PLN02840         21 EKVIVISGPTGAGKSRLALELAKRLNG-------EIISADSVQVYRGLDVG-SAKPSLSERKEVPH--HLIDIL---HPS   87 (421)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHCCC-------CeEeccccceecceeEE-cCCCCHHHHcCCCe--EeEeec---CCC
Confidence            345889999999999999999998764       4544433222111 112 22221111111122  223322   121


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316          285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  316 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~  316 (445)
                      ...+-+.+...+...+-...+.+++.||..+|
T Consensus        88 e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGT  119 (421)
T PLN02840         88 DDYSVGAFFDDARRATQDILNRGRVPIVAGGT  119 (421)
T ss_pred             CceeHHHHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence            11112345555655566666678776666554

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.09  E-value=0.0038  Score=56.79  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .....++++|+||||||+++..++...
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~   49 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGA   49 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            345568899999999999999997654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.08  E-value=0.0043  Score=54.93  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .++|+||.|+|||++.|.|+.
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~   50 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGL   50 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHH
Confidence            599999999999999999983

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.08  E-value=0.024  Score=56.18  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=42.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeeccccc----------cc------ccCCchhHHHHHHHHc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLV----------GE------FVGHTGPKTRRRIKEA  268 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l~----------~~------~~g~~~~~~~~~~~~a  268 (445)
                      ...++|.||+|+||||++..||..+. ..+.   ..+..+++....          ..      ....+...+.+.+...
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g---~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~  297 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK---KKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL  297 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC---CeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh
Confidence            45788999999999999999988765 2111   133333333211          00      1123444555555544


Q ss_pred             -cCcEEEEcCccc
Q 013316          269 -EGGILFVDEAYR  280 (445)
Q Consensus       269 -~~~il~lDEid~  280 (445)
                       ..-+||||..-.
T Consensus       298 ~~~DlVlIDt~G~  310 (424)
T PRK05703        298 RDCDVILIDTAGR  310 (424)
T ss_pred             CCCCEEEEeCCCC
Confidence             357899997743

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.08  E-value=0.0015  Score=58.29  Aligned_cols=29  Identities=28%  Similarity=0.488  Sum_probs=24.1

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....--+.+.||+||||||+-|.||....
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34455788999999999999999998653

>TIGR00767 rho transcription termination factor Rho

Probab=97.07  E-value=0.0017  Score=62.65  Aligned_cols=29  Identities=14%  Similarity=0.255  Sum_probs=24.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .....+++.||||+|||++++.|++.+..
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence            44567999999999999999999988754

Members of this family differ in the specificity of RNA binding.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.07  E-value=0.0019  Score=54.22  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=22.0

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ++|.|+||+|||++|+.++..+..
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~   25 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQ   25 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999999864

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.07  E-value=0.00043  Score=59.93  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=23.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++|.|+||+||||+|+.+++.+..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~   28 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAE   28 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            36889999999999999999998754

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK06217 hypothetical protein; Validated

Probab=97.06  E-value=0.00046  Score=60.24  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..|+|.|+||+||||+|+.|++.++.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~   27 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDI   27 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            35899999999999999999998764

>PRK06547 hypothetical protein; Provisional

Probab=97.05  E-value=0.00049  Score=59.17  Aligned_cols=29  Identities=24%  Similarity=0.204  Sum_probs=24.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..+..|++.|++|+|||++|+.+++.++.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~   41 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGF   41 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45667888999999999999999998653

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.05  E-value=0.0079  Score=53.75  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..++|+||.|+|||++.|.++..
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~   52 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALI   52 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHH
Confidence            67899999999999999999843

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.02  E-value=0.00089  Score=58.42  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=22.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+..++|.||||+|||++++.+.+..
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            45678999999999999999997754

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.02  E-value=0.0067  Score=53.76  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=21.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...++|+||.|+|||++.+.++...
T Consensus        29 ~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          29 SRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999998654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.0018  Score=55.21  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=21.2

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...++|+||+|+||+|+++.+-...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468899999999999999987654

>TIGR00416 sms DNA repair protein RadA

Probab=97.01  E-value=0.0051  Score=61.42  Aligned_cols=106  Identities=15%  Similarity=0.152  Sum_probs=59.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc------ccC----------C-chhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE  267 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~------~~g----------~-~~~~~~~~~~~  267 (445)
                      +..-++++|+||+|||+++..++......+    .+++.++..+-..+      -+|          + .-..+...+++
T Consensus        93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g----~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~  168 (454)
T TIGR00416        93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ----MKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE  168 (454)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC----CcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence            444688999999999999999987765432    24444444321111      011          1 22333444555


Q ss_pred             ccCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccCCcEEEEEe
Q 013316          268 AEGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGGKVVVIFA  314 (445)
Q Consensus       268 a~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~i~a  314 (445)
                      .+..+|+||.|..+......+   .....++....|.+......+.+++.
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt  218 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIV  218 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            567899999998886432111   11122344445555555555555554

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=97.01  E-value=0.0029  Score=68.47  Aligned_cols=92  Identities=21%  Similarity=0.218  Sum_probs=53.7

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccCCchhHHHHHHHH--------ccCcEEE
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGHTGPKTRRRIKE--------AEGGILF  274 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~----~~g~~~~~~~~~~~~--------a~~~il~  274 (445)
                      ..+++.|++|||||++.+.+.......+.    .++-+.++....+    -.|-....+.+.+..        ....+|+
T Consensus       363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~----~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlI  438 (988)
T PRK13889        363 DLGVVVGYAGTGKSAMLGVAREAWEAAGY----EVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLV  438 (988)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEE
Confidence            35779999999999999988777765432    4554444432222    123222333333211        1336999


Q ss_pred             EcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEE
Q 013316          275 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF  313 (445)
Q Consensus       275 lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~  313 (445)
                      |||+-.+..           ..+..|+.....  .++++|+
T Consensus       439 VDEASMv~~-----------~~m~~LL~~a~~~garvVLVG  468 (988)
T PRK13889        439 IDEAGMVGT-----------RQLERVLSHAADAGAKVVLVG  468 (988)
T ss_pred             EECcccCCH-----------HHHHHHHHhhhhCCCEEEEEC
Confidence            999966654           555667766544  3344444

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.00  E-value=0.0096  Score=51.91  Aligned_cols=41  Identities=27%  Similarity=0.364  Sum_probs=30.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      ++.-+++.|+||+|||++|+.++..+...+.    ..+.++...+
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~----~~~~l~~d~~   57 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLESKGY----RVYVLDGDNV   57 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEECChHH
Confidence            4567889999999999999999998865332    3445554443

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.00  E-value=0.0019  Score=59.64  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=23.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+++|.||||+||||+.+.++..+.
T Consensus       111 ~~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       111 VLNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence            36899999999999999999998774

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.00  E-value=0.0024  Score=57.30  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.5

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|+++||||+||||+|+.||+.++.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~   26 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGI   26 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4899999999999999999988754

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.00  E-value=0.00047  Score=57.77  Aligned_cols=24  Identities=42%  Similarity=0.627  Sum_probs=20.9

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++++|.|||||||+++.++ .++.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~   25 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGY   25 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCC
Confidence            57899999999999999999 5543

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.98  E-value=0.00049  Score=57.88  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             eEeecCCCCchhHHHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ++|.|+||+||||+|+.+++.++
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~   24 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLG   24 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcC
Confidence            67899999999999999998754

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK14531 adenylate kinase; Provisional

Probab=96.98  E-value=0.0007  Score=59.07  Aligned_cols=26  Identities=35%  Similarity=0.470  Sum_probs=23.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..+++.||||+||||+++.|++.++.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~   28 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGL   28 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46999999999999999999998754

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=96.97  E-value=0.0022  Score=56.04  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=19.3

Q ss_pred             CeeEeecCCCCchhH-HHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTM-VARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~-~A~~la~~~~  231 (445)
                      .++++.||+|||||+ ++..+...+.
T Consensus        25 ~~~~i~~~~GsGKT~~~~~~~~~~~~   50 (201)
T smart00487       25 RDVILAAPTGSGKTLAALLPALEALK   50 (201)
T ss_pred             CcEEEECCCCCchhHHHHHHHHHHhc
Confidence            689999999999999 5555555443

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=96.97  E-value=0.0032  Score=63.76  Aligned_cols=28  Identities=32%  Similarity=0.489  Sum_probs=24.1

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .++...+++.||+|||||++-|+||..-
T Consensus       416 v~~G~~llI~G~SG~GKTsLlRaiaGLW  443 (604)
T COG4178         416 VRPGERLLITGESGAGKTSLLRALAGLW  443 (604)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3455689999999999999999999854

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.96  E-value=0.16  Score=49.23  Aligned_cols=215  Identities=19%  Similarity=0.198  Sum_probs=105.9

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc---------------ccccCC----chhHH-H
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV---------------GEFVGH----TGPKT-R  262 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~g~----~~~~~-~  262 (445)
                      ..+|..|++.|-.|+||||.|-.+|..+...+.    .+.-+.|....               -.+|+.    ++..+ +
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~----kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak  172 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGK----KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAK  172 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCC----ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHH
Confidence            567788999999999999999999999977332    23323332210               113333    23323 3


Q ss_pred             HHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHH---HHhhccCCcEEEEE-ecCchhHHHHHhhCcccccccc
Q 013316          263 RRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEE---IMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVT  335 (445)
Q Consensus       263 ~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~i~-a~~~~~~~~~~~~~~~l~~R~~  335 (445)
                      ..++.+   ..-++++|=+-+++-         ..+..++   +-..+....+++|. +.+-.+....   ..+|-.+++
T Consensus       173 ~al~~ak~~~~DvvIvDTAGRl~i---------de~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~---A~aF~e~l~  240 (451)
T COG0541         173 AALEKAKEEGYDVVIVDTAGRLHI---------DEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT---AKAFNEALG  240 (451)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccc---------cHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH---HHHHhhhcC
Confidence            344444   347999998766653         1133333   33444555665555 3332221111   223333333


Q ss_pred             -cceeCCCCCHHHHHHHHHHHHh--cccccccccc--cccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          336 -KFFHFNDFNSEELAKILHIKMN--NQTEDSLLYG--FKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       336 -~~i~~~~~~~~~~~~il~~~l~--~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                       .-+-+...|.+.+-=-.-....  ...-.+-..+  +.=-+.|.|+-++..+          .| -.++..++|++.+.
T Consensus       241 itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRI----------LG-MGDv~sLvEk~~~~  309 (451)
T COG0541         241 ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRI----------LG-MGDVLSLIEKAEEV  309 (451)
T ss_pred             CceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHh----------cC-cccHHHHHHHHHHh
Confidence             2234444443333222111111  1111111111  1111234444433222          22 55778888888665


Q ss_pred             hhhhhccCCCChhhhhhccHHHHHHHHHHHHhcC
Q 013316          411 LDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG  444 (445)
Q Consensus       411 ~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~~  444 (445)
                      .+.--.....++-..-..|.+||.+.++.++.+|
T Consensus       310 ~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmG  343 (451)
T COG0541         310 VDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMG  343 (451)
T ss_pred             hhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence            4331111111111123589999999999998887

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=96.96  E-value=0.0016  Score=57.21  Aligned_cols=27  Identities=26%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ......++|.|+.|+|||++.+.|+..
T Consensus        49 ~k~d~~lvl~G~QG~GKStf~~~L~~~   75 (198)
T PF05272_consen   49 CKNDTVLVLVGKQGIGKSTFFRKLGPE   75 (198)
T ss_pred             CcCceeeeEecCCcccHHHHHHHHhHH
Confidence            445557889999999999999999655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	445
3zuh_A	289	Negative Stain Em Map Of The Aaa Protein Cbbx, A Re		2e-35
3syl_A	309	Crystal Structure Of The Aaa+ Protein Cbbx, Native		2e-35
3syk_A	309	Crystal Structure Of The Aaa+ Protein Cbbx, Selenom		3e-33
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		8e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-08
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-08
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-08
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-08
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-08
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		5e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-06
1uoh_A	226	Human Gankyrin Length = 226		2e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-05
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		5e-05
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		6e-05
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		7e-05
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		7e-05
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		7e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		8e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-05
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		9e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		5e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		9e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		9e-04

>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type Rubisco Activase From R. Sphaeroides Length = 289

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 207
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 7   RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 60
Query: 208 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
            HM+F GNPGTGKT VA  +  LL+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 61  LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 120
Query: 267 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 324
            A GG+LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY++ M+   
Sbjct: 121 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 178
Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359
            SN GF  R+     F D++ EEL +I    +++Q
Sbjct: 179 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 213

>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native Structure Length = 309

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 207
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 14  RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 208 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
            HM+F GNPGTGKT VA  +  LL+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 68  LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 267 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 324
            A GG+LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY++ M+   
Sbjct: 128 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185
Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359
            SN GF  R+     F D++ EEL +I    +++Q
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220

>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Selenomethionine Structure Length = 309

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/215 (38%), Positives = 127/215 (59%), Gaps = 12/215 (5%)
Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 207
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 14  RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 208 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
            H +F GNPGTGKT VA     LL+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 68  LHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 267 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 324
            A GG+LF+DEAY L   +  +++DYG EA+E ++ V +  +  +VVI AGY++  +   
Sbjct: 128 RAXGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVXENNRDDLVVILAGYADRXENFF 185
Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359
            SN GF  R+     F D++ EEL +I    +++Q
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHXLDDQ 220

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +  +  TPLH++A     EIV+ LL++      ++ A + YG TPLH
Sbjct: 31  RILMANGADVNATD-WLGHTPLHLAAKTGHLEIVEVLLKYG----ADVNAWDNYGATPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           +AA NG  E  ++LL HGA + AK  EG TPL HL+   G  ++ E+LL
Sbjct: 86  LAADNGHLEIVEVLLKHGADVNAKDYEGFTPL-HLAAYDGHLEIVEVLL 133

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A     EIV+ LL+    +  ++ A ++ G TPLH
Sbjct: 31  RILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLK----NGADVNASDLTGITPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +AA  G  E  ++LL HGA + A  N+G TPL HL+   G  ++ E+LL H  +
Sbjct: 86  LAAATGHLEIVEVLLKHGADVNAYDNDGHTPL-HLAAKYGHLEIVEVLLKHGAD 138

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 48  AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
            +TPLH++A     E+VK LL    +   +  A++  G+TPLH+AA+NG  E  KLLL+ 
Sbjct: 37  GKTPLHLAAENGHKEVVKLLL----SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           GA   AK ++GKTPL HL+   G  ++ +LLL
Sbjct: 93  GADPNAKDSDGKTPL-HLAAENGHKEVVKLLL 123

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  A SG L   + LL+    +  + + V   TPLH++A +   EIV+ LL+    +  
Sbjct: 51  LHLAAYSGHLEIVEVLLKHGADV--DASDVFGYTPLHLAAYWGHLEIVEVLLK----NGA 104
Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
           ++ A +  G TPLH+AAK G  E  ++LL HGA + A+   GKT  D +S   G+  L E
Sbjct: 105 DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
           +L
Sbjct: 164 IL 165

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  A++G L    +LL E  + +N ++    +TPLH++A     E+VK LLE       
Sbjct: 6   LHLAARNGHL-EVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GA 59
Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
           ++ A++  G TPLH+AA+NG  E  KLLL  GA + AK   G+TPL HL+   G  ++ +
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVK 118
Query: 137 LLL 139
           LLL
Sbjct: 119 LLL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           G TPLH+AA+NG  E  KLLL  GA + AK   G+TPL HL+   G  ++ +LLL
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 55

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  + V+  TPLH++A +   EIV+ LL+    +  ++ A +  G TPLH
Sbjct: 31  RILMANGADVNAAD-VVGWTPLHLAAYWGHLEIVEVLLK----NGADVNAYDTLGSTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           +AA  G  E  ++LL +GA + AK + G TPL HL+   G  ++ E+LL
Sbjct: 86  LAAHFGHLEIVEVLLKNGADVNAKDDNGITPL-HLAANRGHLEIVEVLL 133

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A   + EIV+ LL+    +  ++ A +  G TPLH
Sbjct: 23  RILMANGADVNATDD-NGLTPLHLAAANGQLEIVEVLLK----NGADVNASDSAGITPLH 77
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 150
           +AA +G  E  ++LL HGA + A    G TPL HL+   G  ++ E+LL H  +   + A
Sbjct: 78  LAAYDGHLEIVEVLLKHGADVNAYDRAGWTPL-HLAALSGQLEIVEVLLKHGADVNAQDA 136
Query: 151 L 151
           L
Sbjct: 137 L 137

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A     E+VK LLE       ++ A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           A + AK   G+TPL HL+   G  ++ +LLL
Sbjct: 59  ADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 88

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  + V   TPLH++A +   EIV+ LL+    +  ++ A +  G TPLH
Sbjct: 31  RILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLK----NGADVNADDSLGVTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +AA  G  E  ++LL +GA + A  + G TPL HL+   G  ++ E+LL H  +
Sbjct: 86  LAADRGHLEVVEVLLKNGADVNANDHNGFTPL-HLAANIGHLEIVEVLLKHGAD 138

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A Y   EIV+ LL+       ++ A ++ G TPLH
Sbjct: 31  RILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVLLKH----GADVNAIDIMGSTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +AA  G  E  ++LL HGA + A    G TPL HL+   G  ++ E+LL H  +
Sbjct: 86  LAALIGHLEIVEVLLKHGADVNAVDTWGDTPL-HLAAIMGHLEIVEVLLKHGAD 138

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A Y   EIV+ LL+       ++ A ++ G TPLH
Sbjct: 31  RILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVLLKH----GADVNAIDIXGSTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +AA  G  E  ++LL HGA + A    G TPL HL+   G  ++ E+LL H  +
Sbjct: 86  LAALIGHLEIVEVLLKHGADVNAVDTWGDTPL-HLAAIMGHLEIVEVLLKHGAD 138

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 48  AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
             TPLH +A    AE VK LL        ++ A++  G TPLH+AAKNG  E  KLLLA 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           GA + A++ +G TP +HL+   G  ++ +LL
Sbjct: 65  GADVNARSKDGNTP-EHLAKKNGHHEIVKLL 94

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N R+     TPLH++A +   EIV+ LL+    +  ++ A++  G TPLH
Sbjct: 31  RILMANGADVNARD-FTGWTPLHLAAHFGHLEIVEVLLK----NGADVNAKDSLGVTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           +AA+ G  E  ++LL +GA + A  + G TPL HL+   G  ++ E+LL
Sbjct: 86  LAARRGHLEIVEVLLKNGADVNASDSHGFTPL-HLAAKRGHLEIVEVLL 133

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A     EIV+ LL+    +  ++ A +  G TPLH
Sbjct: 31  RILMANGADVNAED-TYGDTPLHLAARVGHLEIVEVLLK----NGADVNALDFSGSTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +AAK G  E  ++LL +GA + A    G TPL HL+   G  ++ E+LL +  +
Sbjct: 86  LAAKRGHLEIVEVLLKYGADVNADDTIGSTPL-HLAADTGHLEIVEVLLKYGAD 138

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 48  AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
            +TPLH +A     EIVK L+    +   ++ A++  G TPLH AAK G  E  KLL++ 
Sbjct: 37  GRTPLHYAAKEGHKEIVKLLI----SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           GA + AK ++G+TPL H +   G  ++ +LL+
Sbjct: 93  GADVNAKDSDGRTPL-HYAAKEGHKEIVKLLI 123

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A     EIV+ LL+       ++ A++  G TPLH
Sbjct: 31  RILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLLK----HGADVNARDTDGWTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +AA NG  E  ++LL +GA + A+   G TPL HL+   G  ++ E+LL H  +
Sbjct: 86  LAADNGHLEIVEVLLKYGADVNAQDAYGLTPL-HLAADRGHLEIVEVLLKHGAD 138

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 48  AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
            +TPLH +A     E+VK L+    +   ++ A++  G TPLH AA+NG  E  KLL++ 
Sbjct: 37  GRTPLHHAAENGHKEVVKLLI----SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 108 GAFIEAKANEGKTPLDH 124
           GA + AK ++G+TPL H
Sbjct: 93  GADVNAKDSDGRTPLHH 109

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  A  G L   + LL+    + N  +  M  TPLH++A Y   EIV+ LL+    +  
Sbjct: 51  LHLAAIKGHLEIVEVLLKHGADV-NAADK-MGDTPLHLAALYGHLEIVEVLLK----NGA 104
Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
           ++ A + YG TPLH+AA  G  E  ++LL +GA + A+   GKT  D +S   G+  L E
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
           +L
Sbjct: 164 IL 165

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  N     TPLH++A Y+  EIV+ LL+       ++ A +  G TPLH
Sbjct: 31  RILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHG----ADVNAHDNDGSTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           +AA  G  E  ++LL HGA + A+   GKT  D +S   G+  L E+L
Sbjct: 86  LAALFGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A     EIV+ LL+       +++A ++YG TPLH
Sbjct: 31  RILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKH----GADVDAADVYGFTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +AA  G  E  ++LL +GA + A    G TPL HL+   G  ++ E+LL +  +
Sbjct: 86  LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPL-HLAADEGHLEIVEVLLKYGAD 138

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 30/131 (22%)
Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVE---------LEAQ------------------- 81
           TPLH++A  N+ E+ +SLL++ G+   E         L AQ                   
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 82  -NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140
            N  G TPLH+ A+ G    A +L+ HG  ++A    G TPL H+++  G+ KL + LL 
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGNIKLVKFLLQ 332
Query: 141 HSEEQRKRRAL 151
           H  +   +  L
Sbjct: 333 HQADVNAKTKL 343

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 48  AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
            +TPLH +A     EIVK LL    +   +  A++  G TPLH AA+NG  E  KLLL+ 
Sbjct: 37  GRTPLHYAAENGHKEIVKLLL----SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           GA   AK ++G+TPL H +   G  ++ +LLL
Sbjct: 93  GADPNAKDSDGRTPL-HYAAENGHKEIVKLLL 123

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
           TPLH++A     EIV+ LL++      ++ A++ +G TPLH+AA  G  E  ++LL HGA
Sbjct: 49  TPLHLAAQLGHLEIVEVLLKYG----ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELL 138
            + A+   GKT  D +S   G+  L E+L
Sbjct: 105 DVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N ++     TPLH++A     EIV+ LL+       ++ A++  G TPLH
Sbjct: 31  RILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG----ADVNAKDKDGYTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           +AA+ G  E  ++LL  GA + AK  +G TPL HL+   G  ++ E+LL
Sbjct: 86  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 133

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 21  AQSGDLLAFQRLLRENPSLLNERNPVMAQ-TPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79
           A++GD+   ++L       +N R+    Q TPLH +AGYN+  +V+ LL+       ++ 
Sbjct: 20  AKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH----GADVH 73
Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           A++  G  PLH A   G  E A+LL+ HGA +        TPL H +   G  ++ +LLL
Sbjct: 74  AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLL 132
Query: 140 WHSEEQRKR 148
            H  +  K+
Sbjct: 133 QHGADPTKK 141

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  + V   TPLH++A  +  EIV+ LL+    +  ++ A +  GETPLH
Sbjct: 31  RILMANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVLLK----NGADVNAIDAIGETPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           + A  G  E  ++LL HGA + A+   GKT  D +S   G+  L E+L
Sbjct: 86  LVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 21  AQSGDLLAFQRLLRENPSLLNERNPVMAQ-TPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79
           A++GD+   ++L       +N R+    Q TPLH +AGYN+  +V+ LL+       ++ 
Sbjct: 16  AKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH----GADVH 69
Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           A++  G  PLH A   G  E A+LL+ HGA +        TPL H +   G  ++ +LLL
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLL 128
Query: 140 WHSEEQRKR 148
            H  +  K+
Sbjct: 129 QHGADPTKK 137

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 21  AQSGDLLAFQRLLRENPSLLNERNPVMAQ-TPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79
           A++GD+   ++L       +N R+    Q TPLH +AGYN+  +V+ LL+       ++ 
Sbjct: 18  AKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH----GADVH 71
Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           A++  G  PLH A   G  E A+LL+ HGA +        TPL H +   G  ++ +LLL
Sbjct: 72  AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLL 130
Query: 140 WHSEEQRKR 148
            H  +  K+
Sbjct: 131 QHGADPTKK 139

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N ++     TPLH++A     EIV+ LL+   +    + A++  G TPLH
Sbjct: 19  RILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLH 73
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           +AA+ G  E  ++LL  GA + AK  +G TPL HL+   G  ++ E+LL
Sbjct: 74  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N ++     TPLH++A     EIV+ LL+       ++ A++  G TPLH
Sbjct: 19  RILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG----ADVNAKDKDGYTPLH 73
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           +AA+ G  E  ++LL  GA + AK  +G TPL HL+   G  ++ E+LL
Sbjct: 74  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 121

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N ++     TPL+++  +   EIV+ LL+    +  ++ A +  G TPLH
Sbjct: 31  RILMANGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           +AA  G  E A++LL HGA + A+   GKT  D +S G G+  L E+L
Sbjct: 86  LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD-ISIGNGNEDLAEIL 132

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  N     TPLH+       EI++ LL++      ++ A +  G TPLH
Sbjct: 31  RILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAA----DVNASDKSGWTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           +AA  G  E  ++LL +GA + A   +G TPL HL+   G  ++ E+LL
Sbjct: 86  LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPL-HLAAEDGHLEIVEVLL 133

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N +  N  +    +TPLH++A     EIV+ LL     +  ++ A +  G TPLH
Sbjct: 19  RILMANGADANAYDH-YGRTPLHMAAAVGHLEIVEVLLR----NGADVNAVDTNGTTPLH 73
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +AA  G  E  ++LL +GA + AK   G TPL +L+   G  ++ E+LL H  +
Sbjct: 74  LAASLGHLEIVEVLLKYGADVNAKDATGITPL-YLAAYWGHLEIVEVLLKHGAD 126

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A     EIV+ LL+       ++ A++++G TPLH
Sbjct: 31  RILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHG----ADVNARDIWGRTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           +AA  G  E  ++LL +GA + A+   GKT  D +S   G+  L E+L
Sbjct: 86  LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A     EIV+ LL+       ++ A +++G TPLH
Sbjct: 31  RILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHG----ADVNASDIWGRTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           +AA  G  E  ++LL +GA + A+   GKT  D +S   G+  L E+L
Sbjct: 86  LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
           TPLH++A +   +IV+ LL++    K ++ A N +G  PLH A   G ++ A+ L+A+GA
Sbjct: 69  TPLHLAASHGHRDIVQKLLQY----KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELL 138
            +      G+ P+D        A LRELL
Sbjct: 125 LVSICNKYGEMPVD-----KAKAPLRELL 148

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
           TPLH++A +   +IV+ LL++    K ++ A N +G  PLH A   G ++ A+ L+A+GA
Sbjct: 74  TPLHLAASHGHRDIVQKLLQY----KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELL 138
            +      G+ P+D        A LRELL
Sbjct: 130 LVSICNKYGEMPVD-----KAKAPLRELL 153

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  +     TPLH++A     EIV+ LL+       ++ A + +G TPLH
Sbjct: 31  RILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHG----ADVNASDSWGRTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           +AA  G  E  ++LL +GA + A+   GKT  D +S   G+  L E+L
Sbjct: 86  LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R+L  N + +N  N     TPLH++A     EIV+ LL+    +  ++ A    G TPLH
Sbjct: 31  RILTANGADVNA-NDYWGHTPLHLAAMLGHLEIVEVLLK----NGADVNATGNTGRTPLH 85
Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           +AA     E  ++LL HGA + A+   GKT  D +S   G+  L E+L
Sbjct: 86  LAAWADHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 1   MQKNQDRRSRSAKPAT-IHGCAQSGDLLAFQRLLRENPSLLNERNPV--MAQTPLHVSAG 57
           M    D  +  A   T +H  A +G L   + LL+    +    N V     TPL ++A 
Sbjct: 34  MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV----NAVDHAGMTPLRLAAL 89
Query: 58  YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANE 117
           +   EIV+ LL+    +  ++ A +M G TPLH+AA  G  E  ++LL +GA + A+   
Sbjct: 90  FGHLEIVEVLLK----NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 118 GKTPLDHLSNGPGSAKLRELL 138
           GKT  D +S   G+  L E+L
Sbjct: 146 GKTAFD-ISIDNGNEDLAEIL 165

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
           TPLH++AGYN+  IV+ LL+  G D   + A++  G  PLH A   G  E  +LLL HGA
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQH-GAD---VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
            + A      TPL H +      ++  LLL H
Sbjct: 116 CVNAMDLWQFTPL-HEAASKNRVEVCSLLLSH 146

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           QT  H++  +     +++LL+      ++LEA+N  G T LH+A    C E  +LLL  G
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 109 AFIEA-KANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A I+A     G++PL H      S  + +LLL H
Sbjct: 140 ADIDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQH 172

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
            PLH++      ++VK LL+       +   +++ G TPL  A   G +E   LLL HGA
Sbjct: 121 VPLHLACQQGHFQVVKCLLD----SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE-----QRKRRALEACSETKAKMDEL 164
            I A  N+G T L H +       + ELLL H        +R+R A++ C+E  +K+ EL
Sbjct: 177 SINASNNKGNTAL-HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD-CAEQNSKIMEL 234

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
           +PLH++A   + EIVK+LL        ++ A N  G TPLH AA    +E A +LL  GA
Sbjct: 75  SPLHIAASAGRDEIVKALL----GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             +AK +   T + H +   G+ K+  +LL++
Sbjct: 131 NPDAKDHYEATAM-HRAAAKGNLKMIHILLYY 161

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
           +PLH++A   + EIVK+LL        ++ A N  G TPLH AA    +E A +LL  GA
Sbjct: 76  SPLHIAASAGRDEIVKALL----GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             +AK +   T + H +   G+ K+  +LL++
Sbjct: 132 NPDAKDHYEATAM-HRAAAKGNLKMIHILLYY 162

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  AQ G     + LLR   S   +    + +TPLH++A    A IV+ LL+       
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVS--RDARTKVDRTPLHMAASEGHANIVEVLLK----HGA 91
Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
           ++ A++M   T LH A ++   E  +LL+ +GA +  ++   KT  D +S   G+  L E
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD-ISIDNGNEDLAE 150
Query: 137 LL 138
           +L
Sbjct: 151 IL 152

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 6   DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVK 65
           D+ SR+A    +H    +G     + LL+    + N+++     +PLH++A   + EIVK
Sbjct: 37  DQDSRTA----LHWACSAGHTEIVEFLLQLGVPV-NDKDDA-GWSPLHIAASAGRDEIVK 90
Query: 66  SLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL 125
           +LL         + A N  G TPLH AA    +E A +LL  GA  +AK +   T + H 
Sbjct: 91  ALLV----KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM-HR 145
Query: 126 SNGPGSAKLRELLLWH 141
           +   G+ K+  +LL++
Sbjct: 146 AAAKGNLKMVHILLFY 161

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 272
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 272
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GI 272
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GI 272
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GI 272
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 6   DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVK 65
           D+ SR+A    +H    +G     + LL+    + N+++     +PLH++A     EIVK
Sbjct: 37  DQDSRTA----LHWACSAGHTEIVEFLLQLGVPV-NDKDDA-GWSPLHIAASAGXDEIVK 90
Query: 66  SLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL 125
           +LL         + A N  G TPLH AA    +E A +LL  GA  +AK +   T + H 
Sbjct: 91  ALLV----KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM-HR 145
Query: 126 SNGPGSAKLRELLLWH 141
           +   G+ K+  +LL++
Sbjct: 146 AAAKGNLKMVHILLFY 161

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1   MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
           +QK+QD R     P       Q+ ++ +F     EN +L ++       TP H++     
Sbjct: 30  LQKDQDGRI----PLHWSVSFQAHEITSFLLSKMENVNL-DDYPDDSGWTPFHIACSVGN 84
Query: 61  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT 120
            E+VKSL + P   K +L      G T LH+A      E ++ L+ +GA +  K    + 
Sbjct: 85  LEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 121 PLDHLSNGPGSAKLRELL 138
           PL H +   GS KL ELL
Sbjct: 143 PL-HRAASVGSLKLIELL 159

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 76  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
            ++ A++  G TPLH+AA+NG  E  KLLL  GA + A+   GKT  D +S   G+  L 
Sbjct: 30  ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFD-ISIDNGNEDLA 88
Query: 136 ELL 138
           E+L
Sbjct: 89  EIL 91

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1   MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
           +QK+QD R     P       Q+ ++ +F     EN +L ++       TP H++     
Sbjct: 30  LQKDQDGRI----PLHWSVSFQAHEITSFLLSKMENVNL-DDYPDDSGWTPFHIACSVGN 84
Query: 61  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT 120
            E+VKSL + P   K +L      G T LH+A      E ++ L+ +GA +  K    + 
Sbjct: 85  LEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 121 PLDHLSNGPGSAKLRELL 138
           PL H +   GS KL ELL
Sbjct: 143 PL-HRAASVGSLKLIELL 159

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1   MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
           +QK+QD R     P       Q+ ++ +F     EN +L ++       TP H++     
Sbjct: 30  LQKDQDGRI----PLHWSVSFQAHEITSFLLSKMENVNL-DDYPDDSGWTPFHIACSVGN 84
Query: 61  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT 120
            E+VKSL + P   K +L      G T LH+A      E ++ L+ +GA +  K    + 
Sbjct: 85  LEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 121 PLDHLSNGPGSAKLRELL 138
           PL H +   GS KL ELL
Sbjct: 143 PL-HRAASVGSLKLIELL 159

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GI 272
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 76  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
            ++ A++  G TPLH+AA+NG  E  KLLL  GA + A+   GKT  D +S   G+  L 
Sbjct: 48  ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD-ISIDNGNEDLA 106
Query: 136 ELL 138
           E+L
Sbjct: 107 EIL 109

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 15  ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
           A       SGD     RLL E  + +N  N V   T LH +   +  ++VK L+E   N 
Sbjct: 42  AVFLAACSSGDTEEVLRLL-ERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGAN- 98
Query: 75  KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
              +   +  G  PLH AA  G  + A+ L++ GA + A  +EG TPLD
Sbjct: 99  ---INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  +  GD+ + + LL +N S  N ++     TPLH +  +   ++V+ LL+     K 
Sbjct: 14  LHIASIKGDIPSVEYLL-QNGSDPNVKDHA-GWTPLHEACNHGHLKVVELLLQ----HKA 67
Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
            +       ++PLH AAKNG  +  KLLL++GA   A    G  P+D+  +      ++ 
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD----ESMKS 123
Query: 137 LLL 139
           LLL
Sbjct: 124 LLL 126

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 16/145 (11%)
Query: 21  AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80
           A+  D+ A  +LL+     +++R   M +T LH++A Y+  E    L+E       E   
Sbjct: 11  AKENDVQALSKLLKFEGCEVHQRG-AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 81  QNMY-GETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------------EGKTPLDHLS 126
             +Y G+T LH+A  N      + LLA GA + A+A               G+ PL   +
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS-FA 128
Query: 127 NGPGSAKLRELLLWHSEEQRKRRAL 151
              GS ++  LL+ H  + R + +L
Sbjct: 129 ACVGSEEIVRLLIEHGADIRAQDSL 153

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  A+ G+L ++ R   +N   +N  +     T L+ +      +IV+ L   P    +
Sbjct: 77  LHEAAKRGNL-SWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFTQP---NI 131
Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
           EL  QN  G+T LH AA  G  +  +LLLA GA  + +  E K   D  +N   ++ L++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKK 191

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 31/152 (20%)
Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND- 74
           +IH  A  G+L   +  LR+  +L+N+ +     TPL  ++ + + E V+ LLEW  +  
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 75  ----------------------------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
                                        V++   +  G TPL  A +    +  + LLA
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 107 HGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
            GA +  +A+ G TP+D L+   G  K+++++
Sbjct: 124 RGADLTTEADSGYTPMD-LAVALGYRKVQQVI 154

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           R ++ + + LN +N  + QTPLH++   N+ EI ++LL   G D    E ++  G TPLH
Sbjct: 29  RQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALL-GAGCDP---ELRDFRGNTPLH 83
Query: 91  MAAKNGCNEAAKLLLAHG------AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           +A + GC  +  +L          + ++A    G T L HL++  G   + ELL+
Sbjct: 84  LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL-HLASIHGYLGIVELLV 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	4e-58
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-10
2rfa_A	232	Transient receptor potential cation channel subfa	5e-18
2rfa_A	232	Transient receptor potential cation channel subfa	6e-18
2rfa_A	232	Transient receptor potential cation channel subfa	2e-17
2rfa_A	232	Transient receptor potential cation channel subfa	6e-16
2rfa_A	232	Transient receptor potential cation channel subfa	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	1e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-05
2pnn_A	273	Transient receptor potential cation channel subfa	5e-15
2pnn_A	273	Transient receptor potential cation channel subfa	1e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-09
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	4e-14
2etb_A	256	Transient receptor potential cation channel subfam	1e-13
2etb_A	256	Transient receptor potential cation channel subfam	1e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-09
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	5e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-08
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	2e-04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	3e-04
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	3e-04
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	3e-04
2chq_A	319	Replication factor C small subunit; DNA-binding pr	5e-04
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	8e-04

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score =  192 bits (489), Expect = 4e-58
 Identities = 102/293 (34%), Positives = 149/293 (50%), Gaps = 23/293 (7%)

Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH 208
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL        H
Sbjct: 14  RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLH 69

Query: 209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 268
           M+F GNPGTGKT VA  +  LL+ +G +    +  V R DLVG+++GHT PKT+  +K A
Sbjct: 70  MSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA 129

Query: 269 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIFAGYSEPMKRVIAS 326
            GG+LF+DEAY L         DYG EA+E ++ VM+     +VVI AGY++ M+    S
Sbjct: 130 MGGVLFIDEAYYLYRPDNER--DYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQS 187

Query: 327 NEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 386
           N GF  R+     F D++ EEL +I    +++Q           +   + +A  AL    
Sbjct: 188 NPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ-----------NYQMTPEAETALRAYI 236

Query: 387 TTEKQRREM-NGGLVDPMLVNARENLDLRL---SFDCLDTDELRTITLEDLEA 435
              + +    N   +   L  AR     RL   S   LD   L TI  ED+ A
Sbjct: 237 GLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRA 289

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 96.7 bits (242), Expect = 8e-24
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH++A +   +IV+ LL++    K ++ A N +G  PLH A   G ++ A+ L+A+G
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQY----KADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +      G+ P+   +  P    LRE     
Sbjct: 129 ALVSICNKYGEMPV-DKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 89.8 bits (224), Expect = 3e-21
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              +        A  V+  L+   ND   L   + +G +PLH A + G +   ++L+  G
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTEND---LNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A I        TPL HL+   G   + + LL +
Sbjct: 63  ARINVMNRGDDTPL-HLAASHGHRDIVQKLLQY 94

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 89.0 bits (222), Expect = 5e-21
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           I    + G+ +A +  L    + LN+ +     +PLH +    ++ +V+ L+        
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMR----GA 63

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
            +   N   +TPLH+AA +G  +  + LL + A I A    G  PL H +   G  ++ E
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL-HYACFWGQDQVAE 122

Query: 137 LLLWH 141
            L+ +
Sbjct: 123 DLVAN 127

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
             PLH +  + + ++ + L+     +   +   N YGE P+  A         +     G
Sbjct: 106 NVPLHYACFWGQDQVAEDLVA----NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

Query: 109 AFIEAK 114
             +   
Sbjct: 162 QNLNRI 167

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
               +    + G   A +L L +    +    + G +PL H +   G + + E+L+  
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL-HWACREGRSAVVEMLIMR 61

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 94.2 bits (235), Expect = 2e-22
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T L+ +      +IV+ L   P    +EL  QN  G+T LH AA  G  +  +LLLA G
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPN---IELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  + +  E K     ++     A L +     
Sbjct: 164 ARTDLRNIEKKLAF-DMATNAACASLLKKKQGT 195

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH- 107
             PLH +A       ++  L+    ++V +   +  G T L+ A   G  +  ++L    
Sbjct: 74  DNPLHEAAKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP 129

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
              +  +   G T L H +   G A + +LLL  
Sbjct: 130 NIELNQQNKLGDTAL-HAAAWKGYADIVQLLLAK 162

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 78.8 bits (195), Expect = 5e-17
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LH +A    A+IV+ LL          + +N+  +    MA    C    K      
Sbjct: 141 DTALHAAAWKGYADIVQLLLA----KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196

Query: 109 AFIEAKANEGKTPLDHLSNGPG 130
           A       E        S+   
Sbjct: 197 AVRTLSNAEDYLDD-EDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 72.7 bits (179), Expect = 7e-15
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T         +  ++ S              Q    + PLH AAK G     +  L + 
Sbjct: 46  DTNWWKGTSKGRTGLIPSNYVA---------EQAESIDNPLHEAAKRGNLSWLRECLDNR 96

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             +      G T L + +   G   + E+L   
Sbjct: 97  VGVNGLDKAGSTAL-YWACHGGHKDIVEMLFTQ 128

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 10/93 (10%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           Q  +  +    +      L    G+    +       +T        G        L   
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGD----IIYITDMSDTNWWKGTSKGR-----TGLIPS 63

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
            ++  +A     PL H +   G+       L +
Sbjct: 64  NYVAEQAESIDNPL-HEAAKRGNLSWLRECLDN 95

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 5/45 (11%), Positives = 8/45 (17%)

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
                  G+  +  A           L      I    +   T  
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNW 49

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 92.9 bits (232), Expect = 8e-22
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH++        V  L+        EL+  N   +TPLH+A         +LL+  G
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A   A    G+T   HL+    S      LL  
Sbjct: 70  ASPMALDRHGQTAA-HLACEHRSPTCLRALLDS 101

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 86.7 bits (216), Expect = 1e-19
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           QT  H++  +     +++LL+      ++LEA+N  G T LH+A    C E  +LLL  G
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139

Query: 109 AFIEAK-ANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A I+A     G++PL   +    S  + +LLL H
Sbjct: 140 ADIDAVDIKSGRSPL-IHAVENNSLSMVQLLLQH 172

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 86.7 bits (216), Expect = 1e-19
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
           +  +    ++PL  +   N   +V+ LL+        + AQ   G + LH A+  G    
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGLLPL 198

Query: 101 AKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
            + L+  GA    K     TPL  ++       +       
Sbjct: 199 VRTLVRSGADSSLKNCHNDTPL-MVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.9 bits (206), Expect = 3e-18
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           QTPLH++       +V+ L+           A + +G+T  H+A ++      + LL   
Sbjct: 47  QTPLHLAVITTLPSVVRLLVTA----GASPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102

Query: 109 AF----IEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A     +EA+  +G T L H++      +  +LLL  
Sbjct: 103 APGTLDLEARNYDGLTAL-HVAVNTECQETVQLLLER 138

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            + LH ++G     +V++L+        +   +N + +TPL +A      +  +      
Sbjct: 184 SSALHSASGRGLLPLVRTLVR----SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

Query: 109 A 109
           A
Sbjct: 240 A 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.3 bits (150), Expect = 6e-11
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLL----AHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
             +  G+TPLH+A   G   A   L+      G  ++   N  +TPL HL+       + 
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-HLAVITTLPSVV 62

Query: 136 ELLLWH 141
            LL+  
Sbjct: 63  RLLVTA 68

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.0 bits (232), Expect = 1e-21
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LH++  +     +  LL         L+ QN  G+T LH+AA  G     + L A G
Sbjct: 10  DTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +      G T L HL+    +     +LL  
Sbjct: 69  AGVLVAERGGHTAL-HLACRVRAHTCACVLLQP 100

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 92.2 bits (230), Expect = 3e-21
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
           RLLR+  + LN+  P   +TPLH++     A +++ LL+       +  A+   G TPL 
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA----GADPTARMYGGRTPLG 230

Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSE 143
            A        A+LL AHGA       +  +P    S     +  R+    + +
Sbjct: 231 SALLRPNPILARLLRAHGAPEPEDGGDKLSPC-SSSGSDSDSDNRDEGDEYDD 282

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 36  NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95
             +   +  P  +  P  V +  N     +   E      ++LEA+N  G TPLH+A  +
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR---LQLEAENYDGHTPLHVAVIH 168

Query: 96  GCNEAAKLLLAHGAFIEAK-ANEGKTPLDHLSNGPGSAKLRELLLWH 141
              E  +LL   GA +       G+TPL HL+    +A + ELLL  
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPL-HLAVEAQAASVLELLLKA 214

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 36  NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95
               L+ +N  + QT LH++A   +A  V+ L          +      G T LH+A + 
Sbjct: 34  GHEYLDLQN-DLGQTALHLAAILGEASTVEKLYA----AGAGVLVAERGGHTALHLACRV 88

Query: 96  GCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128
             +  A +LL         A++           
Sbjct: 89  RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 49  QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAA-KNGCN 98
            T LH++           LL+                  +        P  + +  N  N
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 99  EAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           E           +EA+  +G TPL H++     A++  LL 
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPL-HVAVIHKDAEMVRLLR 178

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA---FIEAKANEGKTPLDHLSNGPGSAKL 134
                  G+T LH+A  +        LL   A   +++ + + G+T L HL+   G A  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL-HLAAILGEAST 60

Query: 135 RELLLWH 141
            E L   
Sbjct: 61  VEKLYAA 67

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 87.4 bits (218), Expect = 3e-21
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH++A    AEIVK LL   G D     A++  G TP H+A KNG +E  KLL A G
Sbjct: 43  NTPLHLAAKNGHAEIVKLLLA-KGADV---NARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98

Query: 109 AFIEAKANEGKTPLDH 124
           A + A++        H
Sbjct: 99  ADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.7 bits (216), Expect = 7e-21
 Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH +A    AE VK LL   G D     A++  G TPLH+AAKNG  E  KLLLA G
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLS-KGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + A++ +G TP  HL+   G  ++ +LL   
Sbjct: 66  ADVNARSKDGNTPE-HLAKKNGHHEIVKLLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 64.3 bits (158), Expect = 6e-13
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 82  NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           +  G TPLH AAKNG  E  K LL+ GA + A++ +G TPL HL+   G A++ +LLL  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL-HLAAKNGHAEIVKLLLAK 64

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 87.8 bits (219), Expect = 4e-21
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL+++  +   EIV+ LL+    +  ++ A +  G TPLH+AA  G  E A++LL HG
Sbjct: 48  LTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142
           A + A+   GKT    +S G G+  L E+L   +
Sbjct: 104 ADVNAQDKFGKTAF-DISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.5 bits (213), Expect = 3e-20
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
             L  +A   + + V+ L+     +  ++ A++ YG TPL++A  +G  E  ++LL +GA
Sbjct: 16  KKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
            + A    G TPL HL+   G  ++ E+LL H
Sbjct: 72  DVNAVDAIGFTPL-HLAAFIGHLEIAEVLLKH 102

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLREL 137
                      L  AA+ G ++  ++L+A+GA + AK   G TPL +L+   G  ++ E+
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPL-YLATAHGHLEIVEV 65

Query: 138 LLWH 141
           LL +
Sbjct: 66  LLKN 69

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 88.6 bits (221), Expect = 4e-21
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A    A IV+ LL+       ++ A++M   T LH A ++   E  +LL+ +G
Sbjct: 68  RTPLHMAASEGHANIVEVLLK----HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           A +  ++   KT    +S   G+  L E+L
Sbjct: 124 ADVHTQSKFCKTAF-DISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.4 bits (218), Expect = 1e-20
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +PLH++A Y      + LL       V  +A+     TPLHMAA  G     ++LL HG
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + AK     T L H +      ++ ELL+ +
Sbjct: 91  ADVNAKDMLKMTAL-HWATEHNHQEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 82.4 bits (205), Expect = 6e-19
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L  +A   + + V+ L+             +  G +PLH+AA+ G     ++LL  G
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAP-----FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
              +A+    +TPL H++   G A + E+LL H
Sbjct: 58  VSRDARTKVDRTPL-HMAASEGHANIVEVLLKH 89

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
               L  AA+ G ++  ++L+A+GA        G +PL HL+   G     E+LL  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPL-HLAAQYGHFSTTEVLLRA 56

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 87.9 bits (219), Expect = 4e-21
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH +  +   ++V+ LL+     K  +       ++PLH AAKNG  +  KLLL++G
Sbjct: 44  WTPLHEACNHGHLKVVELLLQ----HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A   A    G  P+   ++      L  L   +
Sbjct: 100 ASRNAVNIFGLRPV-DYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 87.5 bits (218), Expect = 7e-21
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T LH+++       V+ LL+  G+D      ++  G TPLH A  +G  +  +LLL H 
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQ-NGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +     +  +PL H +   G   + +LLL +
Sbjct: 67  ALVNTTGYQNDSPL-HDAAKNGHVDIVKLLLSY 98

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 65.5 bits (161), Expect = 4e-13
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +PLH +A     +IVK LL + G  +    A N++G  P+             L   + 
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSY-GASR---NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

Query: 109 A 109
           +
Sbjct: 133 S 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 65.1 bits (160), Expect = 5e-13
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
             N  GET LH+A+  G   + + LL +G+    K + G TPL H +   G  K+ ELLL
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL-HEACNHGHLKVVELLL 63

Query: 140 WH 141
            H
Sbjct: 64  QH 65

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 90.2 bits (225), Expect = 6e-21
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TP H++      E+VKSL +     K +L      G T LH+A      E ++ L+ +G
Sbjct: 73  WTPFHIACSVGNLEVVKSLYD--RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +  K    + PL H +   GS KL ELL   
Sbjct: 131 ASVRIKDKFNQIPL-HRAASVGSLKLIELLCGL 162

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL-AH 107
           Q PLH +A     ++++ L       K  +  Q+  G TPL  A   G  +AA LL+  +
Sbjct: 141 QIPLHRAASVGSLKLIELLCG---LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           GA  +   N+G    D   N     ++++  L +
Sbjct: 198 GAEYDLVDNKGAKAEDVALNE----QVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 7e-18
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 18  HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77
           H      +    Q LL   PSLL +++    + PLH S  +   EI   LL     +   
Sbjct: 7   HQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSK-MENVNL 64

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAH--GAFIEAKANEGKTPLDHLSNGPGSAKLR 135
            +  +  G TP H+A   G  E  K L        +    N+G T L HL+ G    ++ 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL-HLAVGKKWFEVS 123

Query: 136 ELLLWH 141
           + L+ +
Sbjct: 124 QFLIEN 129

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 80.6 bits (200), Expect = 1e-17
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 47  MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
           M+  PLH +   N+   V+ LL    +       ++  G  PLH +     +E    LL+
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLL---LQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 107 HGAFI---EAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
               +   +   + G TP  H++   G+ ++ + L   
Sbjct: 58  KMENVNLDDYPDDSGWTPF-HIACSVGNLEVVKSLYDR 94

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 80.2 bits (199), Expect = 2e-17
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LH++ G    E+ + L+E    +   +  ++ + + PLH AA  G  +  +LL   G
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 109 -AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
            + +  +  +G TPL   +   G      LL+
Sbjct: 164 KSAVNWQDKQGWTPL-FHALAEGHGDAAVLLV 194

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.9 bits (219), Expect = 7e-21
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
            + G A  GD+   +RLL       +  N    +T L V   +    I   LL+  G   
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQVMM-FGSTAIALELLK-QGASP 61

Query: 76  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
                Q+  G +P+H AA+ G  +  K+L+ HGA +      G  P+ HL+   G   + 
Sbjct: 62  ---NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVV 117

Query: 136 ELLLWH 141
             L   
Sbjct: 118 SFLAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 81.3 bits (202), Expect = 1e-18
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +P+H +A     + +K L+E       ++   +  G  P+H+A + G       L A  
Sbjct: 69  TSPVHDAARTGFLDTLKVLVE----HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           + +  +   G TPL  L+   G+  L ++L  H
Sbjct: 124 SDLHRRDARGLTPL-ELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 78.2 bits (194), Expect = 2e-17
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
             L  +A     + V+ LL       V  +A N +G+T L +    G    A  LL  GA
Sbjct: 4   DRLSGAAARGDVQEVRRLLHREL---VHPDALNRFGKTALQVMM-FGSTAIALELLKQGA 59

Query: 110 FIEAKANEGKTPL 122
               +   G +P+
Sbjct: 60  SPNVQDTSGTSPV 72

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 85  GETPLHMAAKNG-CNEAAKLLLAHGAFIEAKANEGKTPLDHL-SNG 128
               L  AA  G   E  +LL       +A    GKT L  +   G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFG 46

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 86.6 bits (216), Expect = 8e-21
 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 36  RTPLHLAARNGHLEVVKLLLEA-GADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + AK   G+TPL HL+   G  ++ +LLL  
Sbjct: 92  ADVNAKDKNGRTPL-HLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 84.7 bits (211), Expect = 5e-20
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 3   RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 109 AFIEAKANEGKTPL 122
           A + AK   G+TPL
Sbjct: 59  ADVNAKDKNGRTPL 72

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 70.1 bits (173), Expect = 6e-15
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 69  RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

Query: 109 AF 110
           A+
Sbjct: 125 AY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 63.5 bits (156), Expect = 1e-12
 Identities = 22/38 (57%), Positives = 26/38 (68%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           G TPLH+AA+NG  E  KLLL  GA + AK   G+TPL
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 39

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 92.7 bits (231), Expect = 8e-21
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T LH +A  +   IVK L+   G++K   + Q+  G+TP+ +AA+ G  E    L+  G
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNK---DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +EA      T    L+       + ++    
Sbjct: 337 ASVEAVDATDHTAR-QLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVE----LEAQNMYGETPLHMAAKNGCNEAAKLL 104
           +T LH  A  + AE  + L+     + +     + A +    TPL +A           L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

Query: 105 LAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           +  GA         ++ L H +       +   +L  ++ 
Sbjct: 186 MKAGADPTIYNKSERSAL-HQAAANRDFGMMVYMLNSTKL 224

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 13/104 (12%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE---AAKLLL 105
           ++ LH +A      ++  +L      K ++E  +  G T L + A N   +   +AKLL+
Sbjct: 200 RSALHQAAANRDFGMMVYMLN-STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258

Query: 106 AHGA--------FIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             GA          +++  +G+T L H +    +  + + L+  
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTAL-HYAAQVSNMPIVKYLVGE 301

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 49  QTPLHVSAGYNKAE---IVKSLLE----WPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 101
            T L + A     +     K L+E       +     +++   G T LH AA+       
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 102 KLLLAH-GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           K L+   G+  + +  +GKTP+  L+   G  ++   L+  
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPI-MLAAQEGRIEVVMYLIQQ 335

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.8 bits (169), Expect = 7e-13
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH- 107
              LH  A  +   I + +      + ++      +  T LH  A N   E ++ L+ H 
Sbjct: 95  PIKLHTEAAGSY-AITEPITR-ESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHE 148

Query: 108 -------GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
                  GA + A   +  TPL  L+      +L   L+  
Sbjct: 149 AKECIAAGADVNAMDCDENTPL-MLAVLARRRRLVAYLMKA 188

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TP+ ++A   + E+V  L++        +EA +    T   +A  N  +    +     
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQ----QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

Query: 109 AFIE 112
              E
Sbjct: 370 PERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 21/132 (15%)

Query: 10  RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLE 69
           R+ K   I+       +   ++  + + S+ +       Q  L  ++     +  ++ L 
Sbjct: 5   RTRKRRMINASVWMPPMENEEKNRKNHQSITSS------QHSLLEASYDGYIKRQRNEL- 57

Query: 70  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP 129
                         Y   P      NG +        +         E    L H     
Sbjct: 58  ------------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKL-HTEAA- 103

Query: 130 GSAKLRELLLWH 141
           GS  + E +   
Sbjct: 104 GSYAITEPITRE 115

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 87.8 bits (219), Expect = 9e-21
 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL ++A +   EIV+ LL+  G D     A +M G TPLH+AA  G  E  ++LL +G
Sbjct: 81  MTPLRLAALFGHLEIVEVLLK-NGADV---NANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142
           A + A+   GKT    +S   G+  L E+L   +
Sbjct: 137 ADVNAQDKFGKTAF-DISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 85.1 bits (212), Expect = 9e-20
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH++A     EIV+ LL+  G D     A +  G TPL +AA  G  E  ++LL +G
Sbjct: 48  WTPLHLAAFNGHLEIVEVLLK-NGADV---NAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + A   EG TPL HL+   G  ++ E+LL +
Sbjct: 104 ADVNANDMEGHTPL-HLAAMFGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L  +A   + + V+ L+     +  ++ A++  G TPLH+AA NG  E  ++LL +G
Sbjct: 15  GKKLLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + A  + G TPL  L+   G  ++ E+LL +
Sbjct: 71  ADVNAVDHAGMTPL-RLAALFGHLEIVEVLLKN 102

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 62.8 bits (154), Expect = 6e-12
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLREL 137
                      L  AA+ G ++  ++L+A+GA + A+   G TPL HL+   G  ++ E+
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPL-HLAAFNGHLEIVEV 65

Query: 138 LLWH 141
           LL +
Sbjct: 66  LLKN 69

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.3 bits (215), Expect = 9e-21
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           + PLH +A   + EI++ LL   G D     A + +  TPL  A   G     KLLL+ G
Sbjct: 41  RKPLHYAADCGQLEILEFLLL-KGADI---NAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

Query: 109 AFIEAKANEGKTPLD 123
           A    K  +G T  +
Sbjct: 97  ADKTVKGPDGLTAFE 111

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 81.3 bits (202), Expect = 7e-19
 Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
                +      + VK  +   G D          G  PLH AA  G  E  + LL  GA
Sbjct: 9   KEFMWALKNGDLDEVKDYVA-KGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 110 FIEAKANEGKTPL 122
            I A      TPL
Sbjct: 65  DINAPDKHHITPL 77

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 62.8 bits (154), Expect = 2e-12
 Identities = 10/43 (23%), Positives = 15/43 (34%)

Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
                 +     A KNG  +  K  +A G  +      G+ PL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPL 44

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 4/51 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
            TPL  +        VK LL   G DK     +   G T            
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLS-KGADK---TVKGPDGLTAFEATDNQAIKA 120

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.8 bits (219), Expect = 1e-20
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L  +A     E VK L      +            TPLH AA        + LL HG
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + AK   G  PL H +   G  ++ ELL+ H
Sbjct: 66  ADVHAKDKGGLVPL-HNACSYGHYEVAELLVKH 97

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.8 bits (219), Expect = 1e-20
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
             PLH +  Y   E+ + L++        +   +++  TPLH AA  G  E  KLLL HG
Sbjct: 76  LVPLHNACSYGHYEVAELLVK----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A    K  +G TPLD + +  G   +++LL   
Sbjct: 132 ADPTKKNRDGNTPLDLVKD--GDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH +AGYN+  +V+ LL+       ++ A++  G  PLH A   G  E A+LL+ HG
Sbjct: 43  STPLHFAAGYNRVSVVEYLLQ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +        TPL H +   G  ++ +LLL H
Sbjct: 99  AVVNVADLWKFTPL-HEAAAKGKYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 60.5 bits (148), Expect = 3e-11
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 82  NMYGETPLHMAAKNGCNEAAKLLL-AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140
           N   +  L  AAK G  E  K L                TPL H + G     + E LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL-HFAAGYNRVSVVEYLLQ 63

Query: 141 H 141
           H
Sbjct: 64  H 64

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 60.5 bits (148), Expect = 3e-11
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH +A   K EI K LL+  G D      +N  G TPL +   +G  +   LL    
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQH-GADP---TKKNRDGNTPLDLVK-DGDTDIQDLLRGDA 163

Query: 109 A 109
           A
Sbjct: 164 A 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 89.4 bits (223), Expect = 1e-20
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH +   +   + + L+    N   +L+A+   G TPL +AA+       + L+   
Sbjct: 59  RTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + A  + GK+ L H +    +     +LL +
Sbjct: 116 ADVNAVDDLGKSAL-HWAAAVNNVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 89.0 bits (222), Expect = 1e-20
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           ++ LH +A  N  +    LL+    +    + QN   ETPL +AA+ G  E AK+LL H 
Sbjct: 126 KSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  +   +  + P   ++       +  LL  +
Sbjct: 182 ANRDITDHMDRLPR-DIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.9 bits (219), Expect = 3e-20
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL ++A      +++ L+        ++ A +  G++ LH AA     +AA +LL +G
Sbjct: 93  TTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  + + N  +TPL  L+   GS +  ++LL H
Sbjct: 149 ANKDMQNNREETPL-FLAAREGSYETAKVLLDH 180

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.2 bits (212), Expect = 3e-19
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T LH++A Y++++  K LLE       +   Q+  G TPLH A         ++L+ + 
Sbjct: 26  ETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81

Query: 109 AF-IEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  ++A+ ++G TPL  L+       + E L+  
Sbjct: 82  ATDLDARMHDGTTPL-ILAARLAVEGMLEDLINS 114

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.5 bits (174), Expect = 4e-14
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 59  NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEG 118
           +   ++   +   G         +  GET LH+AA+   ++AAK LL   A    + N G
Sbjct: 2   DAPAVISDFIY-QGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG 58

Query: 119 KTPLDHLSNGPGSAKLRELLLWH 141
           +TPL H +    +  + ++L+ +
Sbjct: 59  RTPL-HAAVSADAQGVFQILIRN 80

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 68.2 bits (168), Expect = 2e-13
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPL ++A     E  K LL+         +  +     P  +A +   ++  +LL  + 
Sbjct: 159 ETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

Query: 109 AFIEAK 114
                +
Sbjct: 215 LVRSPQ 220

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.2 bits (220), Expect = 1e-20
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 39  LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN 98
           L N R+    +TPL V+        +  L+E   +     E +++ G T L  A KN   
Sbjct: 27  LRNYRD-SYNRTPLMVACMLGMENAIDKLVE-NFDKL---EDKDIEGSTALIWAVKNNRL 81

Query: 99  EAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             A+ LL+ G+ +  K   GKTPL   S   G +++   LL H
Sbjct: 82  GIAEKLLSKGSNVNTKDFSGKTPL-MWSIIFGYSEMSYFLLEH 123

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.8 bits (219), Expect = 2e-20
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPL  S  +  +E+   LLE  G +      +N+ GETPL +A+K G +E  K LL  G
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLE-HGANV---NDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A I A+   G T     +   G  ++ ++    
Sbjct: 158 ADISARDLTGLTAE-ASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 85.1 bits (212), Expect = 1e-19
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T L  +   N+  I + LL   G++      ++  G+TPL  +   G +E +  LL HG
Sbjct: 69  STALIWAVKNNRLGIAEKLLS-KGSNV---NTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +  +  EG+TPL  +++  G +++ + LL  
Sbjct: 125 ANVNDRNLEGETPL-IVASKYGRSEIVKKLLEL 156

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 77.8 bits (193), Expect = 6e-17
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 11/93 (11%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +    +    +  + +  L             ++ Y  TPL +A   G   A   L+ + 
Sbjct: 9   EIVEKIKDEKSINQNLDFLRN----------YRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             +E K  EG T L   +       + E LL  
Sbjct: 59  DKLEDKDIEGSTAL-IWAVKNNRLGIAEKLLSK 90

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 64.3 bits (158), Expect = 3e-12
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPL V++ Y ++EIVK LLE  G D     A+++ G T    A   G  E  K+     
Sbjct: 135 ETPLIVASKYGRSEIVKKLLE-LGADI---SARDLTGLTAEASARIFGRQEVIKIFTEVR 190

Query: 109 A 109
            
Sbjct: 191 R 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 7/61 (11%)

Query: 81  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140
            +  GE    +  +   N+    L         + +  +TPL  ++   G     + L+ 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPL-MVACMLGMENAIDKLVE 56

Query: 141 H 141
           +
Sbjct: 57  N 57

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 18  HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77
           H  A  G+L   +  LR+  +L+N+ +     TPL  ++ + + E V+ LLEW G D   
Sbjct: 7   HQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEW-GADP-- 62

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
                   E+ L +A+  G  +   LLL     I      G TPL
Sbjct: 63  -HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           ++ L +++     +IV  LLE      V++   +  G TPL  A +    +  + LLA G
Sbjct: 70  ESALSLASTGGYTDIVGLLLE----RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +  +A+ G TP+  L+   G  K+++++  H
Sbjct: 126 ADLTTEADSGYTPM-DLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 85.9 bits (214), Expect = 5e-20
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              +H  A   + + +K  L   G++ V     +  G TPL  A+  G  E  + LL  G
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRK-GDNLVN--KPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 109 AFIEAKANEGKTPL 122
           A     A E ++ L
Sbjct: 60  ADPHILAKERESAL 73

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.8 bits (198), Expect = 7e-18
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL  +   N  + V++LL   G D      +   G TP+ +A   G  +  +++  H 
Sbjct: 103 GTPLLYAVRGNHVKCVEALLA-RGADL---TTEADSGYTPMDLAVALGYRKVQQVIENHI 158

Query: 109 AFIEAKANEGKTP 121
             +         P
Sbjct: 159 LKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.6 bits (130), Expect = 9e-09
 Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANEGKTPL 122
               +H  A  G  +  K  L  G   +      G TPL
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL 40

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 89.1 bits (222), Expect = 2e-20
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           ++ LH +A  N  +    LL+    +    + QN   ETPL +AA+ G  E AK+LL H 
Sbjct: 158 KSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  +   +  + P   ++       +  LL   
Sbjct: 214 ANRDITDHMDRLPR-DIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.5 bits (218), Expect = 7e-20
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH +   +   + + L+    N   +L+A+   G TPL +AA+       + L+   
Sbjct: 91  RTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + A  + GK+ L H +    +     +LL +
Sbjct: 148 ADVNAVDDLGKSAL-HWAAAVNNVDAAVVLLKN 179

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL ++A      +++ L+    N   ++ A +  G++ LH AA     +AA +LL +G
Sbjct: 125 TTPLILAARLAVEGMLEDLI----NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  + + N  +TPL  L+   GS +  ++LL H
Sbjct: 181 ANKDMQNNREETPL-FLAAREGSYETAKVLLDH 212

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T LH++A Y++++  K LLE       +   Q+  G TPLH A         ++L+ + 
Sbjct: 58  ETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113

Query: 109 AF-IEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  ++A+ ++G TPL  L+       + E L+  
Sbjct: 114 ATDLDARMHDGTTPL-ILAARLAVEGMLEDLINS 146

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 75.6 bits (187), Expect = 1e-15
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGN-DKVEL---------EAQNMYGETPLHMAAKNGCN 98
            TPL +++         +  E       +              +  GET LH+AA+   +
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 99  EAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           +AAK LL   A    + N G+TPL H +    +  + ++L+ +
Sbjct: 71  DAAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRN 112

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPL ++A     E  K LL+         +  +     P  +A +   ++  +LL    
Sbjct: 191 ETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 109 AFI 111
              
Sbjct: 247 HHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 52.5 bits (127), Expect = 6e-08
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 15/80 (18%)

Query: 76  VELEAQNMYGETPLHMAAKNG-------------CNEAAKLLLAHGAFIE-AKANEGKTP 121
           +++  +   G TPL +A+ +G                     +  GA +       G+T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 122 LDHLSNGPGSAKLRELLLWH 141
           L HL+     +   + LL  
Sbjct: 61  L-HLAARYSRSDAAKRLLEA 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 84.3 bits (210), Expect = 3e-20
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEA-GADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 109 AFIEAKANEGKTPL 122
           A + AK   G+TPL
Sbjct: 59  ADVNAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.1 bits (173), Expect = 3e-15
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 36  RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

Query: 109 AF 110
           A+
Sbjct: 92  AY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.8 bits (149), Expect = 6e-12
 Identities = 22/38 (57%), Positives = 26/38 (68%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           G TPLH+AA+NG  E  KLLL  GA + AK   G+TPL
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 39

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.2 bits (220), Expect = 3e-20
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LH++A     E+V+ LL    N ++++  Q+  G TP+  A +    +  KLLL+ G
Sbjct: 78  STCLHLAAKKGHYEVVQYLLS---NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           + I  + NE    L H +   G   + E+LL  
Sbjct: 135 SDINIRDNEENICL-HWAAFSGCVDIAEILLAA 166

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.7 bits (216), Expect = 1e-19
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              LH +A     +I + LL      K +L A N++G++PLH+AA+    +   L L+  
Sbjct: 145 NICLHWAAFSGCVDIAEILLA----AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200

Query: 109 AFIEAKANEGKTPLD 123
           + +  K  EG+TPL 
Sbjct: 201 SDVTLKNKEGETPLQ 215

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 85.2 bits (212), Expect = 3e-19
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           ++PLH +A     +I   L++        ++  +    TPL  AA+N   EA K L+  G
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A ++ K  EG T L HL+   G  ++ + LL +
Sbjct: 68  ALVDPKDAEGSTCL-HLAAKKGHYEVVQYLLSN 99

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 85.2 bits (212), Expect = 4e-19
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TP+  +  Y   ++VK LL   G+D      ++      LH AA +GC + A++LLA  
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSK-GSDI---NIRDNEENICLHWAAFSGCVDIAEILLAAK 167

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             + A    G +PL H++          L L  
Sbjct: 168 CDLHAVNIHGDSPL-HIAARENRYDCVVLFLSR 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 83.6 bits (208), Expect = 1e-18
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPL  +A  N  E VK L++  G      + ++  G T LH+AAK G  E  + LL++G
Sbjct: 45  RTPLMEAAENNHLEAVKYLIKA-GALV---DPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100

Query: 109 AF-IEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
              +  + + G TP+   +       L +LLL  
Sbjct: 101 QMDVNCQDDGGWTPM-IWATEYKHVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 66.3 bits (163), Expect = 1e-12
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 76  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           +  + ++    +PLH AA+ G  +   +L+  GA I+  + + +TPL
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPL 48

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.4 bits (158), Expect = 5e-12
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +PLH++A  N+ + V   L        ++  +N  GETPL  A+ N    +A  +    
Sbjct: 178 DSPLHIAARENRYDCVVLFLS----RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

Query: 109 A 109
            
Sbjct: 234 Q 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.4 bits (220), Expect = 3e-20
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 15  ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
           A   GC  S  +L          S+L   N     T LH+++ +    IV+ L+      
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATN-YNGHTCLHLASIHGYLGIVELLVSL---- 139

Query: 75  KVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAK 133
             ++ AQ    G T LH+A      +   LLL  GA +     +G +P   L+ G  S +
Sbjct: 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLTWGRPSTR 198

Query: 134 LRELLLWH 141
           +++ L   
Sbjct: 199 IQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.8 bits (203), Expect = 5e-18
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            + LH++  + +  +   ++     D   L  QN   +TPLH+A      E A+ LL  G
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEA 153
              E +   G TPL HL+   G      +L            L+A
Sbjct: 69  CDPELRDFRGNTPL-HLACEQGCLASVGVLTQSCTTPHLHSILKA 112

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.0 bits (188), Expect = 6e-16
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 4/83 (4%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
           N + P   +T LH++      ++V  LL+       ++      G +P  +         
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLK----CGADVNRVTYQGYSPYQLTWGRPSTRI 199

Query: 101 AKLLLAHGAFIEAKANEGKTPLD 123
            + L            E +    
Sbjct: 200 QQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 79  EAQNMYGETPLHMAAKNGCNEAA----KLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKL 134
           +     G++ LH+A  +          + +    AF+  + N  +TPL HL+      ++
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL-HLAVITNQPEI 60

Query: 135 RELLLWH 141
            E LL  
Sbjct: 61  AEALLGA 67

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 101
            +P  ++ G     I + L +    + ++        E       ++   E  
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQ-LTLENLQ---MLPESEDEESYDTESEFTEFT 233

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.3 bits (215), Expect = 3e-20
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           ++ L ++      +IVK LL+      V++   +  G TPL  A      +  K+LL  G
Sbjct: 70  ESALSLACSKGYTDIVKMLLD----CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A    + + G   +  L+   G   +++++  H
Sbjct: 126 ADPTIETDSGYNSM-DLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.5 bits (213), Expect = 5e-20
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              +H  A   +   + + +E     +  +   +  G TPL  AA +G     + LL +G
Sbjct: 4   SLSVHQLAAQGEMLYLATRIE----QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59

Query: 109 AFIEAKANEGKTPL 122
           A  +      ++ L
Sbjct: 60  ADPQLLGKGRESAL 73

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.1 bits (212), Expect = 9e-20
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL  +A + +  +V+ LL+  G D    +      E+ L +A   G  +  K+LL  G
Sbjct: 37  FTPLMWAAAHGQIAVVEFLLQN-GADP---QLLGKGRESALSLACSKGYTDIVKMLLDCG 92

Query: 109 AFIEAKANEGKTPL 122
             +      G TPL
Sbjct: 93  VDVNEYDWNGGTPL 106

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL  +   N  + VK LLE  G D      +   G   + +A   G     +++ +H 
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLES-GADP---TIETDSGYNSMDLAVALGYRSVQQVIESHL 158

Query: 109 AFIEAKANE 117
             +     E
Sbjct: 159 LKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.1 bits (147), Expect = 5e-11
 Identities = 9/38 (23%), Positives = 11/38 (28%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
               +H  A  G        +     I     EG TPL
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL 40

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.8 bits (216), Expect = 4e-20
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAH 107
           +T L   AG    + V+ L E       +L+ ++M  G T LHMAA     E  + L+  
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           GA IE +   G T L  L+        +   +  
Sbjct: 133 GADIEVEDERGLTAL-ELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 83.7 bits (208), Expect = 4e-19
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TP   +A     + +  LLE       +++A +  G T L   A  G ++  +LL   G
Sbjct: 45  ETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 99

Query: 109 AFIEAK-ANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A ++ +    G T L H++ G    ++ E L+  
Sbjct: 100 ADLDHRDMRGGLTAL-HMAAGYVRPEVVEALVEL 132

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 9/93 (9%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
                +      +            D           ETP   AA+    +A   LL   
Sbjct: 15  AMEYLIEWKDGHSPSWVPSSY-IAADV------VSEYETPWWTAARKADEQALSQLL-ED 66

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             ++A    G+T L     G GS K   LL   
Sbjct: 67  RDVDAVDENGRTAL-LFVAGLGSDKCVRLLAEA 98

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.8 bits (177), Expect = 6e-15
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
           + R+     T LH++AGY + E+V++L+E       ++E ++  G T L +A +      
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVE----LGADIEVEDERGLTALELAREILKTTP 158

Query: 101 AKLLLAHGAFIEAKA 115
               +  G  I  + 
Sbjct: 159 KGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
                G     +  K+G + +        A + ++    +TP    +      +    LL
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPW-WTAARKADEQALSQLL 64

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.9 bits (224), Expect = 5e-20
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
           +TPL  +  +   E +  +++   +   + L+  N  G + LH A      + A   +  
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           G  +  + NE   PL +LS       L + LL  
Sbjct: 234 GIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 49  QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
             PL++S       + K LL+          P ++   +    +     +  AA     E
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

Query: 100 AAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             +LL      +    N G            +  ++ + L  
Sbjct: 305 VLQLLQEKLDEVVRSLNTGAGGA-VKRKKKAAPAVKRMKLAP 345

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 5e-17
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              +HV+A   + + V+ L+E      V    QN +G T LH+A K GC + AK L + G
Sbjct: 21  MEKIHVAARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
                    G+ P+ HL+       L   L+
Sbjct: 77  EVHSLW--HGQKPI-HLAVMANKTDLVVALV 104

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 22/111 (19%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDK----------------VEL--EAQNMYGETPLH 90
           Q P+H++   NK ++V +L+E    ++                 E+    ++  G+T LH
Sbjct: 85  QKPIHLAVMANKTDLVVALVE-GAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH 143

Query: 91  MAAKNGCN--EAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
                G    E  K+L+  GA   AK    +TPL   +    + +  +L++
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPL-MRAMEFRNREALDLMM 193

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              +  +A  +K E+++ L E       E+      G        K       ++ LA  
Sbjct: 291 LDFVPAAADPSKQEVLQLLQE----KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346

Query: 109 AFIEAKANEGKTPLD 123
           A +  ++        
Sbjct: 347 APVRTRSRSRARSSA 361

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.1 bits (188), Expect = 2e-15
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 49  QTPLHVSA--GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL- 105
           QT LH     G    E++K L++          A++   ETPL  A +    EA  L++ 
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQL----GASPTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 106 ----AHGAFIEAKANEGKTPL 122
                    ++    +G + L
Sbjct: 195 TVPSKSSLRLDYANKQGNSHL 215

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            + LH +   N  ++    +E      +++  ++     PL+++ +       K LL   
Sbjct: 212 NSHLHWAILINWEDVAMRFVEM----GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267

Query: 109 AFIEAKA---NEGKTPLDHLSNG 128
                +A   + G T L      
Sbjct: 268 DVFLIQACPYHNGTTVLPDRVVW 290

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 30/116 (25%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LH++  +   +  K L    G         +  G+ P+H+A      +    L+   
Sbjct: 54  CTALHLACKFGCVDTAKYLAS-VGEVH---SLWH--GQKPIHLAVMANKTDLVVALVEGA 107

Query: 109 A---------------------FIEAKANEGKTPLDHL--SNGPGSAKLRELLLWH 141
                                     K  +G+T L H     GP   ++ ++L+  
Sbjct: 108 KERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLEMIKILVQL 162

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 75  KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKL 134
           K+     +      +H+AA+ G  +  + L+  G     +   G T L HL+   G    
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDT 68

Query: 135 RELLLWH 141
            + L   
Sbjct: 69  AKYLASV 75

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 2/44 (4%), Positives = 9/44 (20%), Gaps = 4/44 (9%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92
                         + +  L  P      +  ++        ++
Sbjct: 324 AGGAVKRKKKAAPAVKRMKLA-PSAP---VRTRSRSRARSSAVS 363

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 84.7 bits (211), Expect = 1e-19
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              +H +A     + +++LLE     + ++  ++  G  PLH+AAK G     + L+ H 
Sbjct: 71  FAVIHDAARAGFLDTLQTLLE----FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 109 AF-IEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  +  + ++G T    L+   G  ++  L+  +
Sbjct: 127 ASNVGHRNHKGDTAC-DLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 81.3 bits (202), Expect = 2e-18
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L  +A     E + SLL+    +     AQN +G T L +    G  E A+ LL  G
Sbjct: 6   GNELASAAARGDLEQLTSLLQN-NVNV---NAQNGFGRTALQVMK-LGNPEIARRLLLRG 60

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A  + K   G   + H +   G     + LL  
Sbjct: 61  ANPDLKDRTGFAVI-HDAARAGFLDTLQTLLEF 92

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 80.9 bits (201), Expect = 2e-18
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T L V       EI + LL   G +    + ++  G   +H AA+ G  +  + LL   
Sbjct: 39  RTALQV-MKLGNPEIARRLLL-RGANP---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +  + NEG  PL HL+   G  ++ E L+ H
Sbjct: 94  ADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKH 125

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 70.5 bits (174), Expect = 1e-14
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
             PLH++A      +V+ L++   +    +  +N  G+T   +A   G NE   L+ A+G
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVK---HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

Query: 109 A 109
           A
Sbjct: 161 A 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.6 bits (151), Expect = 1e-11
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
               L  AA  G  E    LL +   + A+   G+T L
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL 42

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.4 bits (215), Expect = 3e-19
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
                   +T  + +   N   IV   L                  + +H+  KNG  + 
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST----FDLAILLSCIHITIKNGHVDM 176

Query: 101 AKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             LLL +        +    P   L+      ++ + L  +
Sbjct: 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 80.7 bits (200), Expect = 3e-17
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           + PLH +A     +IVK LL       ++    +  G T L+ A  +G  +  KL +   
Sbjct: 63  EFPLHQAATLEDTKIVKILLFS----GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118

Query: 109 AFIEAKANEG-KTPLDHLSNGPGSAKLRELLLWH 141
             +      G KT   + +       +    L  
Sbjct: 119 WRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSE 151

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +  + +   N   +V +LL                 E PLH AA     +  K+LL  G
Sbjct: 32  HSASYYAIADNNVRLVCTLLNA----GALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
                  ++G T L + +   G+ +  +L +  
Sbjct: 86  LDDSQFDDKGNTAL-YYAVDSGNMQTVKLFVKK 117

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 67.6 bits (166), Expect = 9e-13
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
                ++    K++ +KS L        +    +++G +  + A  +        LL  G
Sbjct: 2   MDLSRINTW--KSKQLKSFLS-----SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG 54

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A       E + PL H +      K+ ++LL+ 
Sbjct: 55  ALKNLL--ENEFPL-HQAATLEDTKIVKILLFS 84

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.5 bits (153), Expect = 3e-11
 Identities = 8/92 (8%), Positives = 27/92 (29%), Gaps = 13/92 (14%)

Query: 49  QTP-LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
             P + ++      E++++L +    +            +           E AK+++  
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFK-YDIN----------IYSANLENVLLDDAEIAKMIIEK 243

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
               ++ +      +   +N       +   L
Sbjct: 244 HVEYKSDSYTKDLDI-VKNNKLDEIISKNKEL 274

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.4 bits (215), Expect = 4e-19
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 13  KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG 72
           K   + G   +G        L  NP + +  +     +P+H +A +     +++L+    
Sbjct: 27  KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS---DWSPMHEAAIHGHQLSLRNLIS--- 80

Query: 73  NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSA 132
                +        +PLH A   G     K+LL HGA +     +  TPL   +   GS 
Sbjct: 81  -QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL-FNACVSGSW 138

Query: 133 KLRELLLWH 141
               LLL H
Sbjct: 139 DCVNLLLQH 147

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.9 bits (206), Expect = 4e-18
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +P+H +A     E V SL+ +       ++ +  +  TPL++A +N      K LL  G
Sbjct: 158 ASPIHEAARRGHVECVNSLIAY----GGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A +  +     +PL H      S +L  LL+  
Sbjct: 214 ADVN-QGKGQDSPL-HAVVRTASEELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.8 bits (203), Expect = 1e-17
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL+++    +   VK LLE  G D V    Q    ++PLH   +    E A LL+  G
Sbjct: 191 GTPLYLACENQQRACVKKLLES-GAD-VN---QGKGQDSPLHAVVRTASEELACLLMDFG 245

Query: 109 AFIEAKANEGKTPLD 123
           A  +AK  EGK P++
Sbjct: 246 ADTQAKNAEGKRPVE 260

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 80.6 bits (200), Expect = 3e-17
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +PLH +        VK LL+       ++        TPL  A  +G  +   LLL HG
Sbjct: 93  VSPLHEACLGGHLSCVKILLKH----GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A ++ + ++  +P+ H +   G  +    L+ +
Sbjct: 149 ASVQPE-SDLASPI-HEAARRGHVECVNSLIAY 179

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 80.6 bits (200), Expect = 3e-17
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL  +      + V  LL+        ++ ++    +P+H AA+ G  E    L+A+G
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQH----GASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180

Query: 109 AFIEAKANEGKTPL 122
             I+ K +   TPL
Sbjct: 181 GNIDHKISHLGTPL 194

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.5 bits (153), Expect = 4e-11
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +PLH        E+   L+++      + +A+N  G+ P+ +        A   L   G
Sbjct: 223 DSPLHAVVRTASEELACLLMDF----GADTQAKNAEGKRPVELVPPES-PLAQLFLEREG 277

Query: 109 AFI-EAK 114
           A + + K
Sbjct: 278 ASLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 9/89 (10%)

Query: 54  VSAGYNKAEIVKSLLEWPGN-DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE 112
           + + ++       L+    +   ++ +   M G  P       G       LL++     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPL--M 53

Query: 113 AKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             A    +P+ H +   G       L+  
Sbjct: 54  GDAVSDWSPM-HEAAIHGHQLSLRNLISQ 81

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 87.2 bits (217), Expect = 5e-19
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
            +   A+SG+      LL       +  +     TPLH++AGYN+  IV+ LL+      
Sbjct: 27  ELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTPLHLAAGYNRVRIVQLLLQH----G 81

Query: 76  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
            ++ A++  G  PLH A   G  E  +LLL HGA + A      TPL H +      ++ 
Sbjct: 82  ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPL-HEAASKNRVEVC 140

Query: 136 ELLLWH 141
            LLL H
Sbjct: 141 SLLLSH 146

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 1e-18
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
             PLH +  Y   E+ + LL+        + A +++  TPLH AA     E   LLL+HG
Sbjct: 92  LVPLHNACSYGHYEVTELLLKH----GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           A        GK+ +  ++  P   +      
Sbjct: 148 ADPTLVNCHGKSAV-DMAPTPELRERLTYEF 177

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.2 bits (212), Expect = 2e-18
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLHV+A     ++++ L +       ++ A +  G+T LH AA  G  +  +LLL++G
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKH----GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303

Query: 109 AFIEAKANEGKTPLD 123
           +     + +G T   
Sbjct: 304 SDPSIISLQGFTAAQ 318

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.9 bits (211), Expect = 3e-18
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 10/129 (7%)

Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAG---YNKAEIVKSLLEWPG 72
           ++   A+  DL   ++ L        +      +T LH +       + ++ + LL    
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQ--SHETALHCAVASLHPKRKQVAELLL---- 234

Query: 73  NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSA 132
                +  +N    TPLH+AA+   N+  ++L  HGA + A  + G+T L H +   G  
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL-HRAALAGHL 293

Query: 133 KLRELLLWH 141
           +   LLL +
Sbjct: 294 QTCRLLLSY 302

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.0 bits (188), Expect = 3e-15
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +  L  +A     E + +LL       V   A +    TPLH+AA        +LLL HG
Sbjct: 25  KDELLEAARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + AK   G  PL H +   G  ++ ELLL H
Sbjct: 82  ADVHAKDKGGLVPL-HNACSYGHYEVTELLLKH 113

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.2 bits (160), Expect = 8e-12
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           QT LH +A     +  + LL +      +    ++ G T   M       EA + +L+  
Sbjct: 281 QTALHRAALAGHLQTCRLLLSY----GSDPSIISLQGFTAAQMGN-----EAVQQILSES 331

Query: 109 AFIEAKANEGKT 120
             +     + + 
Sbjct: 332 TPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.2 bits (160), Expect = 8e-12
 Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 29/117 (24%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL----- 103
            TPLH +A  N+ E+   LL        +    N +G++ + MA      E         
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSH----GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180

Query: 104 ----------------LLAHGAFIEAKANEGKTPLDHL---SNGPGSAKLRELLLWH 141
                            LA       +    +T L H    S  P   ++ ELLL  
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETAL-HCAVASLHPKRKQVAELLLRK 236

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 79  EAQNMYGETPLHMAA-KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLREL 137
                Y +  L  AA      +   LL        A      TPL HL+ G    ++ +L
Sbjct: 18  VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL-HLAAGYNRVRIVQL 76

Query: 138 LLWH 141
           LL H
Sbjct: 77  LLQH 80

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.0 bits (214), Expect = 5e-19
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LHV+A     E++K L++     + ++  ++  G TPLH AA  G  EA ++L+ + 
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQ----ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS---EEQRKRR 149
             +EA    G+T    +++      L EL    +    E+R+++
Sbjct: 256 CDMEAVNKVGQTAF-DVADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 82.5 bits (205), Expect = 8e-18
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LH +   +  ++VK L+E    +   +   +  G  PLH AA  G  + A+ L++ G
Sbjct: 74  LTALHQACIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 109 AFIEAKANEGKTPLDH 124
           A + A  +EG TPLD 
Sbjct: 130 AHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.9 bits (198), Expect = 6e-17
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 24/116 (20%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDK---------------VEL--------EAQNMYG 85
            TPL ++      E++++ +   G D                 +               G
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199

Query: 86  ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
            T LH+AA  G  E  KLL+     +  K  +G TPL H +   G  +   +L+ +
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL-HAAAHWGKEEACRILVEN 254

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.5 bits (166), Expect = 1e-12
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 32/120 (26%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-- 106
             PLH +A     +I + L+         + A N  G+TPL +A +    E  +  +   
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQ----GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

Query: 107 -------------------------HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
                                            A  G T L H++   G  ++ +LL+  
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL-HVAAAKGYTEVLKLLIQA 221

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 48  AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
            +    +         ++  +      + + + +   G      A  +G  E    LL  
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVV----KRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLER 62

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           GA I     +G T L H +    +  + + L+ +
Sbjct: 63  GADINYANVDGLTAL-HQACIDDNVDMVKFLVEN 95

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.4 bits (119), Expect = 8e-07
 Identities = 4/45 (8%), Positives = 14/45 (31%)

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           ++  +   +    +    G     +  +      + K ++G   L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL 45

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 85.0 bits (211), Expect = 5e-19
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAH 107
           +T L   AG    + V+ L E       +L+ ++M  G T LHMAA     E  + L+  
Sbjct: 78  RTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           GA IE +   G T L  L+        +   +  
Sbjct: 134 GADIEVEDERGLTAL-ELAREILKTTPKGNPMQF 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TP   +A     + +  LLE       +++A +  G T L   A  G ++  +LL   G
Sbjct: 46  ETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 109 AFIEAK-ANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A ++ +    G T L H++ G    ++ E L+  
Sbjct: 101 ADLDHRDMRGGLTAL-HMAAGYVRPEVVEALVEL 133

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 76.1 bits (188), Expect = 5e-16
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 27/123 (21%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
           + R+     T LH++AGY + E+V++L+E       ++E ++  G T L +A +      
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVEL----GADIEVEDERGLTALELAREILKTTP 159

Query: 101 AKLLLAHGAFIEAKA----------------------NEGKTPLDHLSNGPGSAKLRELL 138
               +  G  I  +                        +GK    +L           + 
Sbjct: 160 KGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVE-YLVRWKDGGDCEWVK 218

Query: 139 LWH 141
             H
Sbjct: 219 GVH 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 9/93 (9%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
                +      +            D           ETP   AA+    +A   LL   
Sbjct: 16  AMEYLIEWKDGHSPSWVPSSYI-AADV------VSEYETPWWTAARKADEQALSQLL-ED 67

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             ++A    G+T L     G GS K   LL   
Sbjct: 68  RDVDAVDENGRTAL-LFVAGLGSDKCVRLLAEA 99

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 20/92 (21%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEW------------------PGNDKVELEAQNMYGETPLH 90
            T L ++    K     + +++                     +  E+  +   G+   +
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204

Query: 91  MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           +       +   +   H A   AK  E    L
Sbjct: 205 LVRWKDGGDCEWVKGVHVAEDVAKDYE--DGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 4/55 (7%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           G     +  K+G + +        A + ++    +TP    +      +    LL
Sbjct: 15  GAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPW-WTAARKADEQALSQLL 65

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 84.0 bits (209), Expect = 5e-19
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L  +   +  ++ + L +       +++  +  G TPL++A  N   E AK L+  G
Sbjct: 7   GALLEAANQRDTKKVKEILQD----TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A I  + +   +P    +   G  ++   +L H
Sbjct: 63  ADINLQNSISDSPY-LYAGAQGRTEILAYMLKH 94

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.3 bits (202), Expect = 4e-18
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA-----KNGCNEAAKL 103
              L  +A     + VK LLE   + + +++ QN +G T L  A           +  KL
Sbjct: 107 GNALIPAAEKGHIDNVKLLLE---DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163

Query: 104 LLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142
           L+ +GA    K N G+T +D+ +   G  ++ ++L  ++
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQK-GYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.3 bits (202), Expect = 4e-18
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            +P   +    + EI+  +L+   +   +L   N YG   L  AA+ G  +  KLLL  G
Sbjct: 73  DSPYLYAGAQGRTEILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129

Query: 109 -AFIEAKANEGKTPL 122
              I+ + + G T L
Sbjct: 130 REDIDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.0 bits (201), Expect = 5e-18
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL+++   N  EI K+L++  G D      QN   ++P   A   G  E    +L H 
Sbjct: 40  NTPLNIAVHNNDIEIAKALID-RGADI---NLQNSISDSPYLYAGAQGRTEILAYMLKHA 95

Query: 109 AF-IEAKANEGKTPL 122
              +      G   L
Sbjct: 96  TPDLNKHNRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 81  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           +       L  A +    +  ++L      ++    EG TPL
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL 43

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.5 bits (218), Expect = 6e-19
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLHV++      IVK+LL+            N+  ETPLHMAA+ G  E AK LL + 
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + AKA + +TPL H +   G   + +LLL +
Sbjct: 71  AKVNAKAKDDQTPL-HCAARIGHTNMVKLLLEN 102

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.8 bits (216), Expect = 1e-18
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH++A  N+ E+ +SLL++         A+++ G TPLH+AA+ G  E   LLL+  
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQY----GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A        G TPL HL    G   + ++L+ H
Sbjct: 269 ANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKH 300

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.8 bits (216), Expect = 1e-18
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLHV+A Y K  + + LLE          A    G TPLH+A  +   +  KLLL  G
Sbjct: 147 FTPLHVAAKYGKVRVAELLLER----DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
               + A  G TPL H++      ++   LL +
Sbjct: 203 GSPHSPAWNGYTPL-HIAAKQNQVEVARSLLQY 234

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLHV++ Y   ++VK LL+     + ++ A+   G +PLH AA+ G  +   LLL +G
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQ----HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
           A     +++G TPL  ++   G   + ++L   ++E
Sbjct: 368 ASPNEVSSDGTTPL-AIAKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.6 bits (213), Expect = 2e-18
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLHV+  +N  +IVK LL           +    G TPLH+AAK    E A+ LL +G
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPR----GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
               A++ +G TPL HL+   G A++  LLL
Sbjct: 236 GSANAESVQGVTPL-HLAAQEGHAEMVALLL 265

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.2 bits (212), Expect = 4e-18
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH++A    AE+V  LL      +      N  G TPLH+ A+ G    A +L+ HG
Sbjct: 246 VTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             ++A    G TPL H+++  G+ KL + LL H
Sbjct: 302 VMVDATTRMGYTPL-HVASHYGNIKLVKFLLQH 333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.2 bits (212), Expect = 4e-18
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH+ A      +   L++      V ++A    G TPLH+A+  G  +  K LL H 
Sbjct: 279 LTPLHLVAQEGHVPVADVLIK----HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A + AK   G +PL H +   G   +  LLL +
Sbjct: 335 ADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKN 366

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 84.1 bits (209), Expect = 8e-18
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPLH++A     E+ K LL+    +K ++ A+    +TPLH AA+ G     KLLL + 
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           A        G TPL H++   G  +    LL
Sbjct: 104 ANPNLATTAGHTPL-HIAAREGHVETVLALL 133

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 83.3 bits (207), Expect = 1e-17
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH++A     E V +LLE     +         G TPLH+AAK G    A+LLL   
Sbjct: 114 HTPLHIAAREGHVETVLALLEK----EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           A   A    G TPL H++    +  + +LLL
Sbjct: 170 AHPNAAGKNGLTPL-HVAVHHNNLDIVKLLL 199

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.9 bits (206), Expect = 2e-17
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           QTPLH +A      +VK LLE    +          G TPLH+AA+ G  E    LL   
Sbjct: 81  QTPLHCAARIGHTNMVKLLLE----NNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           A       +G TPL H++   G  ++ ELLL  
Sbjct: 137 ASQACMTKKGFTPL-HVAAKYGKVRVAELLLER 168

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 6e-14
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL---L 105
            +PLH +A     +IV  LL+            +  G TPL +A + G      +L    
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKN----GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

Query: 106 AHGAFIEAKANEGKTPLD----HLSNG 128
              +F+        +  +     L   
Sbjct: 401 DETSFVLVSDKHRMSFPETVDEILDVS 427

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.7 bits (156), Expect = 3e-11
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 76  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
           +        G TPLH+A+  G     K LL  GA       + +TPL H++   G  ++ 
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL-HMAARAGHTEVA 63

Query: 136 ELLLWH 141
           + LL +
Sbjct: 64  KYLLQN 69

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 80.7 bits (200), Expect = 8e-19
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L  +A   + + V+ L+   G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 25  GKKLLEAARAGQDDEVRILMAN-GADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
           A + A+   GKT    +S   G+  L E+L
Sbjct: 81  ADVXAQDKFGKTAF-DISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.8 bits (164), Expect = 7e-14
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 56  AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115
           + ++       L+   G+               L  AA+ G ++  ++L+A+GA + AK 
Sbjct: 2   SSHHHHHHSSGLVP-RGSHM------GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 116 NEGKTPL 122
             G TPL
Sbjct: 55  KNGSTPL 61

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.1 bits (208), Expect = 8e-19
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
              +++      E+ + +L     DK      +    T LH A   G  E  + LL  G 
Sbjct: 9   MICNLAYSGKLDELKERILA----DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148
            +  K + G +PL H++   G  ++ + LL         
Sbjct: 65  PVNDKDDAGWSPL-HIAASAGXDEIVKALLVKGAHVNAV 102

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T LH +      EIV+ LL+      V +  ++  G +PLH+AA  G +E  K LL  G
Sbjct: 41  RTALHWACSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148
           A + A    G TPL H +      ++  +LL        +
Sbjct: 97  AHVNAVNQNGCTPL-HYAASKNRHEIAVMLLEGGANPDAK 135

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 1   MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
           + K     + +    T    A S +      +L E  +  + ++     T +H +A    
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGN 151

Query: 61  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT 120
            ++V  LL      K     Q+  G TPLH+A      E AK L+  GA I  +  E KT
Sbjct: 152 LKMVHILLF----YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207

Query: 121 PLDHLSNGPGSAKL 134
           PL     G G    
Sbjct: 208 PLQVAKGGLGLILK 221

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 82  NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
            +      ++A     +E  + +LA  +       + +T L H +   G  ++ E LL  
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVEFLLQL 62

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  A  G+L     LL    S  N ++     TPLH++    + E  K L+        
Sbjct: 143 MHRAAAKGNLKMVHILLFYKAST-NIQD-TEGNTPLHLACDEERVEEAKFLV----TQGA 196

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
            +  +N   +TPL +A            LA G 
Sbjct: 197 SIYIENKEEKTPLQVAKGG--LGLILKRLAEGE 227

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 84.0 bits (209), Expect = 1e-18
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
           ++    +  TPLH +       +V  L+++      +    +  G + +H+AA+ G    
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQLMKY----GADPSLIDGEGCSCIHLAAQFGHTSI 124

Query: 101 AKLLLAHGAFIEAKANEGKTPL 122
              L+A G  ++     G TPL
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.7 bits (203), Expect = 7e-18
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 49  QTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLA 106
            TPL  +A   +  +  + LL +     V +      +  T LH A   G      LLL 
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTF----NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198

Query: 107 HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
            GA ++A+  +G++ L  L+    +  +   L   
Sbjct: 199 AGANVDAQNIKGESAL-DLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.9 bits (201), Expect = 1e-17
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              +  +  Y   E  + L+E  G D       +    T LH AA N   +  K  ++ G
Sbjct: 10  TWDIVKATQYGIYERCRELVEA-GYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKG 65

Query: 109 AFIEAKANE-GKTPL 122
           A ++    +   TPL
Sbjct: 66  AIVDQLGGDLNSTPL 80

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.5 bits (179), Expect = 9e-15
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG-CNEAAKLLLAH 107
            + +H++A +    IV  L+        +++  +  G TPL  AA      +  +LLL  
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAK----GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

Query: 108 GAFIEAKAN-EGKTPL 122
              +         T L
Sbjct: 166 NVSVNLGDKYHKNTAL 181

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.8 bits (172), Expect = 8e-14
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 40  LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
           +N  +     T LH +       ++  LLE        ++AQN+ GE+ L +A +     
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNVW 224

Query: 100 AAKLLLAHGAFIEAK 114
               L          
Sbjct: 225 MINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           +   + Y    +  A + G  E  + L+  G  +     E  T L
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLL 46

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
           N +      TPLH +   ++ +IV+ LL   G D      +   G TP  +AA  G  + 
Sbjct: 32  NFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADP---VLRKKNGATPFLLAAIAGSVKL 87

Query: 101 AKLLLAHGAFIEAKANEGKTPL 122
            KL L+ GA +      G T  
Sbjct: 88  LKLFLSKGADVNECDFYGFTAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.1 bits (204), Expect = 1e-17
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG----CNEAAKLL 104
            T L  +A     E++K LL+  G D     A +  G   L  A  +           LL
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLSSDDSDVEAITHLL 205

Query: 105 LAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           L HGA +  +   GKTPL  L+       L + LL  
Sbjct: 206 LDHGADVNVRGERGKTPL-ILAVEKKHLGLVQRLLEQ 241

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAH 107
              L  +      ++V+ LLE        +  Q    G TPLH A +    +  +LLL H
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           GA    +   G TP   L+   GS KL +L L  
Sbjct: 62  GADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSK 94

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.5 bits (192), Expect = 4e-16
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +TPL ++       +V+ LLE      +E+   +  G+T L +A +    + A+LL   G
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

Query: 109 AFIEAK 114
           A  +  
Sbjct: 277 ASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.7 bits (190), Expect = 7e-16
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TP  ++A     +++K  L        ++   + YG T    AA  G  +A K L   G
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSK----GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 109 AFIEAKANEGKTPLDHLSNG 128
           A +  +    +        G
Sbjct: 129 ANVNLRRKTKEDQERLRKGG 148

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 75.6 bits (187), Expect = 2e-15
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 49  QTPLHVSAGYN----KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
           +  L  +   +       I   LL+       ++  +   G+TPL +A +       + L
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 105 LAH-GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           L      I    ++GKT L  L+      K+ ELL   
Sbjct: 239 LEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.6 bits (143), Expect = 7e-10
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 82  NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANE-GKTPLDHLSNGPGSAKLRELLLW 140
            +     L  A +N   +  + LL  GA +  +  E G TPL H +       + ELLL 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-HNAVQMSREDIVELLLR 60

Query: 141 H 141
           H
Sbjct: 61  H 61

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.9 bits (203), Expect = 5e-18
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 49  QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
           QT LH++       +V++LL                        YGE PL  AA  G  E
Sbjct: 76  QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135

Query: 100 AAKLLLAHGAFIEAKANEGKTPLDHLS----NGPGSAKLRELLLWH 141
             +LL+ HGA I A+ + G T L H+     N   + ++  LLL +
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVL-HILILQPNKTFACQMYNLLLSY 180

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.5 bits (202), Expect = 6e-18
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 16/138 (11%)

Query: 18  HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN-DKV 76
              A+  D+ A  +LL+     +++R   M +T LH++A Y+  E    L+E        
Sbjct: 8   LLAAKENDVQALSKLLKFEGCEVHQRG-AMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------------EGKTPLD 123
            + ++   G+T LH+A  N      + LLA GA + A+A               G+ PL 
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL- 125

Query: 124 HLSNGPGSAKLRELLLWH 141
             +   GS ++  LL+ H
Sbjct: 126 SFAACVGSEEIVRLLIEH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           ++PL ++A  N  + +  LL++ G    E+  +   GET LH+AA     EAA +L+   
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEG---CEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 109 AFIE-----AKANEGKTPLDHLSNGPGSAKLRELLLWH 141
             +      ++  EG+T L H++    +  L   LL  
Sbjct: 61  PELVFEPMTSELYEGQTAL-HIAVINQNVNLVRALLAR 97

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 15/103 (14%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAA----KLL 104
           + PL  +A     EIV+ L+E       ++ AQ+  G T LH+         A     LL
Sbjct: 122 EHPLSFAACVGSEEIVRLLIE----HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLL 177

Query: 105 LAHGAFIEAKA------NEGKTPLDHLSNGPGSAKLRELLLWH 141
           L++      K+      N+G TP   L+   G+  + + L+  
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPF-KLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 83  MYGETPLHMAAKNGCNEA-AKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           M  E+PL +AAK    +A +KLL   G  +  +   G+T L H++    + +   +L+  
Sbjct: 1   MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL-HIAALYDNLEAAMVLMEA 59

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L  S+   + ++V+ ++    +D       N  G T LH A   G  E  K L+  G
Sbjct: 38  LALLLDSSLEGEFDLVQRIIY-EVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFG 93

Query: 109 AFIEAKANEGKTPL 122
             + A  ++G TPL
Sbjct: 94  VNVNAADSDGWTPL 107

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 5/74 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           Q  L      N  +     +   G         N      L  ++  G  +  + ++   
Sbjct: 6   QVSLPPGKRTNLRKTGSERIA-HGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 109 AFIEAKANEGKTPL 122
                  +EG T L
Sbjct: 61  DDPSLPNDEGITAL 74

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LH +      EIVK L++      V + A +  G TPLH AA     +  K L+  G
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQ----FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126

Query: 109 AFIEAKAN---EGKTPLDHLSNGPGSAKLRELLLWH 141
           A + A      +            G  +  + L   
Sbjct: 127 AAVFAMTYSDMQTAADK-CEEMEEGYTQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 72.6 bits (179), Expect = 9e-15
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPLH +A  N  ++ K L+E  G     +   +M          + G  + ++ L    
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

Query: 109 AFIEAKANEGKTPLDH 124
             +          L  
Sbjct: 163 EKMGIMNKGVIYALWD 178

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           G+  L    +    +     +AHG  ++         L   S+  G   L + +++ 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALL-LDSSLEGEFDLVQRIIYE 59

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 11/96 (11%), Positives = 20/96 (20%), Gaps = 23/96 (23%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
                       +  + L       + ++   N      L        +E   L +  G 
Sbjct: 141 ADKCEEMEEGYTQCSQFLYG----VQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGD 193

Query: 110 FIEAKA----------------NEGKTPLDHLSNGP 129
            +                     EG  P + L   P
Sbjct: 194 CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
             L  +A   + E+V+  ++   ND       N  G T LH A           L+  GA
Sbjct: 23  VLLLDAALTGELEVVQQAVKE-MNDP---SQPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 110 FIEAKANEGKTPL 122
            + +  + G TPL
Sbjct: 79  NVNSPDSHGWTPL 91

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LH +       IV  L+         + + + +G TPLH AA          L+ HG
Sbjct: 55  ITALHNAICGANYSIVDFLIT----AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110

Query: 109 AFIEAK-ANEGKTPLDH 124
           A I A   ++G T  + 
Sbjct: 111 AAIFATTLSDGATAFEK 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAA--KNGCNEAAKLLL 105
            TPLH +A  N   I  +L++        + A  +  G T        + G  + A  L 
Sbjct: 88  WTPLHCAASCNDTVICMALVQH----GAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143

Query: 106 AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSE 143
                +    +     L   S         EL     E
Sbjct: 144 DVEQSMGLMNSGAVYALWDYSAE----FGDELSFREGE 177

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 64  VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           ++S+L        +     +     L  AA  G  E  +  +           EG T L
Sbjct: 1   MRSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 8/85 (9%), Positives = 19/85 (22%), Gaps = 7/85 (8%)

Query: 40  LNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC 97
           +         T       Y +  A+    L     + +  +   N      L   +    
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLA----DVEQSMGLMNSGAVYALWDYSAEFG 168

Query: 98  NEAAKLLLAHGAFIEAKANEGKTPL 122
           +E           +  +    +T  
Sbjct: 169 DE-LSFREGESVTVLRRDGPEETDW 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query: 48  AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA-AKLLLA 106
           A   L   +     E+          + V +  ++   ET    AA +G      +    
Sbjct: 156 AVYALWDYSAEFGDELSFRE-----GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFG 210

Query: 107 HGAFIEAKANEGKTPLDH 124
               ++ + ++ K    H
Sbjct: 211 LFPRVKPQRSKVKHHHHH 228

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L  +A   + E V+ LLE       +  A N +G  P+ +    G  + A+LLL HG
Sbjct: 13  DAGLATAAARGQVETVRQLLE----AGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHG 67

Query: 109 AFIEAKANEGKT-PLDHLSNGPGSAKLRELLL 139
           A          T P+ H +   G      +L 
Sbjct: 68  AEPNCADPATLTRPV-HDAAREGFLDTLVVLH 98

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 73.6 bits (182), Expect = 4e-16
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-PLHMAAKNGCNEAAKLLLAH 107
           + P+ V      A++ + LL   G +       +    T P+H AA+ G  +   +L   
Sbjct: 46  RRPIQV-MMMGSAQVAELLLLH-GAEP---NCADPATLTRPVHDAAREGFLDTLVVLHRA 100

Query: 108 GAFIEAKANEGKTPL 122
           GA ++     G+ P+
Sbjct: 101 GARLDVCDAWGRLPV 115

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.1 bits (165), Expect = 9e-14
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
           N  +P     P+H +A     + +  L          L+  + +G  P+ +A + G  + 
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRA----GARLDVCDAWGRLPVDLAEEQGHRDI 126

Query: 101 AKLLLAHGA 109
           A+ L A   
Sbjct: 127 ARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.4 bits (158), Expect = 8e-13
 Identities = 13/50 (26%), Positives = 18/50 (36%)

Query: 79  EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128
                  +  L  AA  G  E  + LL  GA   A    G+ P+  +  G
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG 55

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 74.1 bits (183), Expect = 6e-16
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-PLHMAAKNGCNEAAKLLLAH 107
           + P+ V      A + + LL   G +       +    T P+H AA+ G  +   +L   
Sbjct: 46  RRPIQV-MMMGSARVAELLLLH-GAEP---NCADPATLTRPVHDAAREGFLDTLVVLHRA 100

Query: 108 GAFIEAKANEGKTPLD 123
           GA ++ +   G+ P+D
Sbjct: 101 GARLDVRDAWGRLPVD 116

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
             L  +A   + E V++LLE          A N YG  P+ +    G    A+LLL HGA
Sbjct: 14  DWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA 68

Query: 110 FIEAKANEGKT-PLDHLSNGPGSAKLRELLL 139
                     T P+ H +   G      +L 
Sbjct: 69  EPNCADPATLTRPV-HDAAREGFLDTLVVLH 98

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 41  NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
           N  +P     P+H +A     + +  L          L+ ++ +G  P+ +A + G  + 
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRA----GARLDVRDAWGRLPVDLAEELGHRDV 126

Query: 101 AKLLLAHGAFIEAKANEGKTPLD-HL 125
           A+ L A         +      +   
Sbjct: 127 ARYLRAAAGGTRGSNHARIDAAEGPS 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128
           +        L  AA  G  E  + LL  GA   A  + G+ P+  +  G
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG 55

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 5/53 (9%), Positives = 15/53 (28%), Gaps = 9/53 (16%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 101
           + P+ ++      ++ + L                 G     + A  G ++  
Sbjct: 112 RLPVDLAEELGHRDVARYLRAA-AGGT--------RGSNHARIDAAEGPSDIP 155

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 13/115 (11%)

Query: 16  TIHGCAQSGDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
           T+   A  G    F  L  +         ++ ++    L  +    + +I   L+     
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNIL-YDVLRNNNDEARYKISMFLIN---- 63

Query: 74  DKVELEAQNMYGETPLHMAAKNGCN------EAAKLLLAHGAFIEAKANEGKTPL 122
              +++++   G T      + G N      E  K+ L  GA I A     K  +
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 9/74 (12%)

Query: 49  QTPLHVSAGYNKAE------IVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102
           +  +  +      +      + K +    G     L  ++ +G T L    +     A K
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTALEFVKRCQKPIALK 171

Query: 103 LLLAHGAFIEAKAN 116
           ++  +      K N
Sbjct: 172 MMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 12/104 (11%), Positives = 24/104 (23%), Gaps = 18/104 (17%)

Query: 49  QTPLHVSAGYNK------AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102
            T                 E+ K  LE       ++ A     +  +     N   +  +
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEK----GADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 103 -------LLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
                  +    G  +  K   G T L             +++ 
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKPIALKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 44  NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 103
           N +     +  +A     E    L E  G +  E   ++      L         + +  
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFE-KGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 104 LLAHGAFIEAKANEGKTPL 122
           L+  GA I+++  EG T  
Sbjct: 61  LINKGADIKSRTKEGTTLF 79

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 80  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH--LSNGPGSAKLR-- 135
           +  M     +  AA  G  E    L   G   E K +  K+ + +  L N    A+ +  
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 136 ELLLWH 141
             L+  
Sbjct: 59  MFLINK 64

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.0 bits (182), Expect = 5e-15
 Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 20/138 (14%)

Query: 1   MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLL------NERNPVMAQTPLHV 54
            +K      R     +I       +    + LL               ++P   +T L  
Sbjct: 5   GEKPPRLYDRR----SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 55  ---SAGYNKAEIVKSLLE-------WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
              +    + + +  LL+                      G+T LH+A +        LL
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 105 LAHGAFIEAKANEGKTPL 122
           + +GA ++A AN      
Sbjct: 121 VENGADVQAAANGDFFKK 138

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 49  QTPLHVSAGYNKAEIVKSLLE----------WPGNDKVELEAQNMYGETPLHMAAKNGCN 98
           QT LH++       +V  L+E               K +      +GE PL +AA     
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 99  EAAKLLLAHG---AFIEAKANEGKTPLDHLS 126
              K LL +    A I A+ + G T L  L 
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN---------- 98
           + PL ++A  N+  IVK LL+       ++ A++  G T LH   +   N          
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQN-SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 99  ------EAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
                      L       E    +G TPL  L+   G   +   +L
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPL-ALAASSGKIGVLAYIL 253

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 20/90 (22%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKV------------ELEAQNMYGETPLHMAAKNG 96
            T LH         +  +       +++              E  N  G TPL +AA +G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

Query: 97  CNEAAKLLLAHGAFIEAKANEGKTPLDHLS 126
                  +L                  H +
Sbjct: 245 KIGVLAYILQREI-------HEPECR-HAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 12/81 (14%)

Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
           T    +   ++L     L     L    N     TPL ++A   K  ++  +L+      
Sbjct: 202 TKFVTSMYNEILILGAKLHPTLKLEEITN-RKGLTPLALAASSGKIGVLAYILQ------ 254

Query: 76  VELEAQNMYGETPLHMAAKNG 96
                + ++     H AA + 
Sbjct: 255 -----REIHEPECRHAAAHHH 270

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 18/107 (16%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM----------------A 92
           + PL ++A   + ++V  LLE   +    LEA +  G T LH                  
Sbjct: 137 ELPLSLAACTKQWDVVTYLLE-NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 93  AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
             +G  +    L       E   ++G TPL  L+   G  ++   +L
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPL-KLAAKEGKIEIFRHIL 241

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.0 bits (174), Expect = 4e-14
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 49  QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
            + LH++      + VK L+E              +        +GE PL +AA     +
Sbjct: 91  HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 100 AAKLLLAHG---AFIEAKANEGKTPLDHL 125
               LL +    A +EA  + G T L H 
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVL-HA 178

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 16/124 (12%)

Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQ------TPLHVSA---GYNKAEIVKS 66
            +      G       LL                      T L  +           +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 67  LLE-------WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGK 119
           LL+              +   +   G + LH+A +    +  KLL+ +GA +  +A    
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 120 TPLD 123
               
Sbjct: 125 FQKH 128

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            + L +       ++   L           E  N  G TPL +AAK G  E  + +L   
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQL----EEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 109 AFIEAKANEGK 119
               A  +   
Sbjct: 245 FSGAAAHHHHH 255

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 73.5 bits (180), Expect = 1e-14
 Identities = 17/75 (22%), Positives = 29/75 (38%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +          + + +   L+        L AQ+  G+T L++AA+ G       LL +G
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 109 AFIEAKANEGKTPLD 123
           A        G  P+D
Sbjct: 307 ADPFIANKSGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.5 bits (154), Expect = 2e-11
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 11/152 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN----EAAKLL 104
            TPLH        E+VK L++            +  GE+ L  A K+  N        LL
Sbjct: 132 NTPLHWLTSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187

Query: 105 LAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSE---EQRKRRALEACSETKAKM 161
                 +  + +  +T L H+    G         ++ +       ++          + 
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 247

Query: 162 DELENELSNIVGLHELKIQLRKWAKGMLLDER 193
           +   N+ +       L+    KW    +L+ +
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQ 279

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 30  QRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-EAQNMYGETP 88
              L  + S  N       Q   HVS      E+  +      N ++ L    + +G TP
Sbjct: 79  PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP----NTQLNLNIPVDEHGNTP 134

Query: 89  LHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
           LH        E  K L+ HG+      N G++ L
Sbjct: 135 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL 168

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 32  LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91
           L     ++LN ++     T L+++A      IV +LL++      +    N  G  P+  
Sbjct: 268 LKWIIANMLNAQD-SNGDTCLNIAARLGNISIVDALLDY----GADPFIANKSGLRPVDF 322

Query: 92  AA 93
            A
Sbjct: 323 GA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 23  SGDLLAFQRLLRENPSLLNERNPVMAQTPLH------------VSAGYNKAEIVKSLLEW 70
           + D   F+ LL      L   +  M +T LH             +A Y    ++  +++ 
Sbjct: 177 NYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 71  PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG 130
                     +        +   K+   E   L       + A+ + G T L +++   G
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL-NIAARLG 294

Query: 131 SAKLRELLLWH 141
           +  + + LL +
Sbjct: 295 NISIVDALLDY 305

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.2 bits (172), Expect = 8e-14
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 38/173 (21%)

Query: 3   KNQDRRSRSAKPATIHGCAQSGD---LLAFQRLLRENPSLLNE---RNPVMAQTPLHVSA 56
           K  +R         +      G    L      L  +   L +   R P   +T L  + 
Sbjct: 2   KVFNRP-------ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL 54

Query: 57  ---GYNKAEIVKSLLEWPGNDKVELEAQNM-------YGETPLHMAAKNGCNEAAKLLLA 106
                 + + +  LL+         E  N         G+T LH+A +  C    +LL+ 
Sbjct: 55  LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE 114

Query: 107 HGAFIEAKAN--------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145
            GA + A+A                G+ PL  L+       +   L  +  +Q
Sbjct: 115 KGADVHAQARGRFFQPKDEGGYFYFGELPL-SLAACTNQPHIVHYLTENGHKQ 166

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 67.5 bits (165), Expect = 6e-13
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 18/107 (16%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN---------E 99
           + PL ++A  N+  IV  L E  G+ + +L  Q+  G T LH       N         +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTE-NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 100 AAKLLLAHGAFIEAKA-------NEGKTPLDHLSNGPGSAKLRELLL 139
              LLL   A +           N+G +PL  ++   G   + + ++
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGKIGIFQHII 245

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 16/88 (18%)

Query: 49  QTPLH--VSAGYNKAEIVKSLLEWP---------GNDKVELEA-QNMYGETPLHMAAKNG 96
            T LH  V+   N  E  K + +                 LEA  N  G +PL MAAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

Query: 97  CNEAAKLLLAHGAFIEAKANEGKTPLDH 124
                + ++                  H
Sbjct: 237 KIGIFQHIIRRE----IADAAAHHHHHH 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.4 bits (159), Expect = 6e-12
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 10/137 (7%)

Query: 8   RSRSAKPATIHGCAQSGDLLAFQRLLRE----NPSLLNERNPVMAQTPLH--VSAGYNKA 61
           R  + +P  +     + DLL+              L         +  LH  V      +
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 62  EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTP 121
             +   +   G     L+A+   G T LH AA     +  KLLL   A +      G+T 
Sbjct: 206 LPLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 262

Query: 122 LDHLSNGPGSAKLRELL 138
           LD ++      +  ELL
Sbjct: 263 LD-IARKKHHKECEELL 278

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 64.6 bits (157), Expect = 7e-12
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 6/138 (4%)

Query: 6   DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQ----TPLHVSAGYNKA 61
                +AK  ++    ++ D+    +   +   L  +           T LH++      
Sbjct: 123 KHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR 182

Query: 62  EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTP 121
             +  ++++   +   L+ Q   G T LH        E  KLLL   A IE     G+TP
Sbjct: 183 TSL-HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 241

Query: 122 LDHLSNGPGSAKLRELLL 139
           LD ++         ELL 
Sbjct: 242 LD-IAKRLKHEHCEELLT 258

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 48/393 (12%), Positives = 100/393 (25%), Gaps = 113/393 (28%)

Query: 119 KTPLDHLSNGPGSAKLRELLLWHSEEQRKR---RALEA----------------CSETKA 159
           K  +DH+     +      L W    +++    + +E                   +   
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 160 KMDELENELSNI-----------VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH 208
                  +   +           V   +  ++LR+      L E R A  + +       
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-----LLELRPAKNVLI------D 156

Query: 209 MAFLGNPGTGKT----MVARILGRLLYMV-GIL---------PTDRVTEVQ----RTDLV 250
               G  G+GKT     V         M   I          P   +  +Q    + D  
Sbjct: 157 ----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 251 GEFVGHTGPKTRRRIKEAEGGI--LFVDEAYR--LIPMQKADD-KDYGIEALEEIMSVMD 305
                      + RI   +  +  L   + Y   L+ +    + ++       +  +  +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQN------AKAWNAFN 263

Query: 306 GG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL-AKILHIKMNNQTEDS 363
              K+++    + +    + A+                   + L  K L  +        
Sbjct: 264 LSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQD 317

Query: 364 L----LYGFKLHSSCSMDAIAALIEKETTEKQR-REMNGGLVDPMLVNARENLD--LRLS 416
           L    L         S+  IA  I          + +N            + L   +  S
Sbjct: 318 LPREVLTTNPRR--LSI--IAESIRDGLATWDNWKHVN-----------CDKLTTIIESS 362

Query: 417 FDCLDTDELR------TITLEDLEAGLKLLLRL 443
            + L+  E R      ++          LL  +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 59/424 (13%), Positives = 123/424 (29%), Gaps = 113/424 (26%)

Query: 31  RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM--YGETP 88
           RL  +N                +VS      ++ ++LLE      V ++   +   G+T 
Sbjct: 118 RLYNDNQVF----------AKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTW 165

Query: 89  LHMAAKNGC-NEAAKLLLAHGAF-IE-AKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145
           +   A + C +   +  +    F +     N  +T L+ L             L +  + 
Sbjct: 166 V---ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----------LLYQIDP 211

Query: 146 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 205
                 +  S  K ++  ++ EL  ++     +  L      ++L   + A         
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------LVLLNVQNAKAWN----- 260

Query: 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI 265
               AF  N    K ++               T R  +V  TD +          T   +
Sbjct: 261 ----AF--NLSC-KILL---------------TTRFKQV--TDFLSAAT-----TTHISL 291

Query: 266 KEAEGGILFVDEAYRLIPMQKADDKDYGIEAL-EEIMSVMDGGKVVVIFAGYSEPMK-RV 323
                  L  DE   L+        D   + L  E+++                P +  +
Sbjct: 292 DHHSMT-LTPDEVKSLL----LKYLDCRPQDLPREVLTTN--------------PRRLSI 332

Query: 324 IASN--EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSL--LYG----FKLHSSCS 375
           IA +  +G       + ++   N ++L  I+   +N         ++     F   +   
Sbjct: 333 IAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN--------LDLRLSFDCLDTDELRT 427
              ++ +            +N  L    LV  +          + L L     +   L  
Sbjct: 389 TILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 428 ITLE 431
             ++
Sbjct: 448 SIVD 451

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 11/83 (13%), Positives = 19/83 (22%), Gaps = 4/83 (4%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
               ++A      ++  L E        +            +AA+NG       L     
Sbjct: 130 QAFRLAAENGHLHVLNRLCEL-APT-EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 187

Query: 110 FIEAKA--NEGKTPLDHLSNGPG 130
                    E        + G G
Sbjct: 188 TEATAMIQAENYYAFRWAAVGRG 210

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 8/66 (12%), Positives = 15/66 (22%), Gaps = 6/66 (9%)

Query: 59  NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA--KAN 116
           +  + +  LL         ++           +AA+NG       L              
Sbjct: 106 SALDTLCLLLT----SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161

Query: 117 EGKTPL 122
           E     
Sbjct: 162 ENYHAF 167

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 49  QTPLHVSAGYNKA---EIVKSLLEWPG-NDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
              L      N     + ++ LL  PG                 L +A + G   A  LL
Sbjct: 279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338

Query: 105 LAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           L+  + +            +++   G   LR + L H
Sbjct: 339 LSIPSVLALTKANN----YYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 8/69 (11%), Positives = 15/69 (21%), Gaps = 1/69 (1%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
               ++A      ++  L E     +     Q          A   G +     LL    
Sbjct: 165 HAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 110 FIEAKANEG 118
            +       
Sbjct: 224 MLAYAEIHE 232

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 7/61 (11%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              L ++           LL  P    + L   N       ++    G  +   + L H 
Sbjct: 320 NELLRLALRLGNQGACALLLSIPSV--LALTKAN-----NYYINETGGRLDLRAVALEHH 372

Query: 109 A 109
            
Sbjct: 373 H 373

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 26/123 (21%), Positives = 37/123 (30%), Gaps = 4/123 (3%)

Query: 2   QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA 61
             ++D  S                L      L     +          TPL  +   N  
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248

Query: 62  EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTP 121
                 L   G +   +   +  G  PLH A   G    A L L  GA + A+ +EG+ P
Sbjct: 249 LAC-EFLLQNGAN---VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304

Query: 122 LDH 124
           L  
Sbjct: 305 LTI 307

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 39/221 (17%)

Query: 168 LSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL 226
           L  + G     ++L+ W        +       K G+         G PG GKT  A ++
Sbjct: 38  LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97

Query: 227 GRLL-YMV---------GI-LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFV 275
            + L Y +            L    V        V  +  H         K     ++ +
Sbjct: 98  AQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHF---VIIM 154

Query: 276 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG--YSEPMKRVIASNEGFCRR 333
           DE      M   D        + ++          +I      + P  R           
Sbjct: 155 DEV---DGMSGGD-----RGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDR------- 199

Query: 334 VTKFFHFNDFNSEELAKIL-------HIKMNNQTEDSLLYG 367
           V     F   ++  +   L         K++    D L+  
Sbjct: 200 VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 16/66 (24%)

Query: 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARI 225
             L  +VG  E+  +L+ + +                 +  PH+ F G PGTGKT  A  
Sbjct: 14  RTLDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIA 57

Query: 226 LGRLLY 231
           L R L+
Sbjct: 58  LARDLF 63

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 32/251 (12%)

Query: 199 LKVGARRPPHMAFLGNPGTGKTMVARILGRLL------YMVGILPTDRVTEVQRTDLVGE 252
           L+      P    LG PGTGKT+  R L  L         V I              +  
Sbjct: 37  LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96

Query: 253 FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM-------QKADDKDYGIEALEEIMSVMD 305
            +    P+      E    ++       L            A D       L +    + 
Sbjct: 97  SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG 156

Query: 306 GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL 365
             ++ ++  G+++ +   +  +            F+ +  +++  IL  +          
Sbjct: 157 AFRIALVIVGHNDAVLNNLDPSTR-GIMGKYVIRFSPYTKDQIFDILLDR---------A 206

Query: 366 YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDE 424
                  S S D +  + +    +       G        +AR  +D L  S      + 
Sbjct: 207 KAGLAEGSYSEDILQMIADITGAQTPLDTNRG--------DARLAIDILYRSAYAAQQNG 258

Query: 425 LRTITLEDLEA 435
            + I  ED+  
Sbjct: 259 RKHIAPEDVRK 269

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 227
             +I G  +   Q+++    + L  R  AL   +G + P  +   G PGTGKT++AR + 
Sbjct: 203 YDDIGGCRKQLAQIKE---MVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query: 228 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG---ILFVDEAYRLIPM 284
                           +   +++ +  G +    R+  +EAE     I+F+DE   + P 
Sbjct: 260 NETGA-------FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP- 311

Query: 285 QKADDKDYGIEA--LEEIMSVMDG----GKVVVIFA 314
            K +     +E   + +++++MDG      V+V+ A
Sbjct: 312 -KREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 16/66 (24%)

Query: 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARI 225
             L  +VG  E+  +L+ + +                 +  PH+ F G PGTGKT  A  
Sbjct: 14  RTLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIA 57

Query: 226 LGRLLY 231
           L R L+
Sbjct: 58  LARDLF 63

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGEFVGHTGPKT 261
            +  LG PG  K+++AR L             R  E   T      ++ G          
Sbjct: 43  SVFLLGPPGIAKSLIARRLKFAFQNA------RAFEYLMTRFSTPEEVFGPLSIQALKDE 96

Query: 262 RRRIKEAEGG-----ILFVDE 277
            R  +   G      I+F+DE
Sbjct: 97  GRYERLTSGYLPEAEIVFLDE 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	100.0
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	100.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	100.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	100.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	100.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	100.0
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.97
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.97
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.97
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.96
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.96
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.96
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.95
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.95
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.94
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.94
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.94
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.94
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.93
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.93
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.93
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.93
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.92
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.92
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.91
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.91
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.9
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.89
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.89
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.89
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.89
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.89
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.89
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.89
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.88
3pvs_A	447	Replication-associated recombination protein A; ma	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.88
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.88
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.88
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.88
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.87
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.87
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.87
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.87
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.87
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.87
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.87
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.87
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.87
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.87
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.87
2rfa_A	232	Transient receptor potential cation channel subfa	99.86
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.86
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.86
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.86
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.86
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.86
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.86
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.86
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.86
2etb_A	256	Transient receptor potential cation channel subfam	99.85
2rfa_A	232	Transient receptor potential cation channel subfa	99.85
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.85
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.85
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.85
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.85
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.85
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.85
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.85
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.85
2etb_A	256	Transient receptor potential cation channel subfam	99.85
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.85
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.85
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.84
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.84
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.84
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.84
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.84
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.84
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
2pnn_A	273	Transient receptor potential cation channel subfa	99.84
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.84
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.84
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.83
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.83
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.83
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.83
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.83
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.82
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.82
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.82
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.82
2pnn_A	273	Transient receptor potential cation channel subfa	99.82
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.82
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.82
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.82
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.81
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.81
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.81
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.81
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.8
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.8
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.8
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.79
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.79
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.79
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.79
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.79
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.78
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.78
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.78
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.78
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.78
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.76
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.76
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.76
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.75
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.75
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.75
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.75
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.74
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.74
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.74
3bos_A	242	Putative DNA replication factor; P-loop containing	99.73
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.73
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.73
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.73
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.72
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.72
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.72
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.71
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.71
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.71
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.71
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.7
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.7
3co5_A	143	Putative two-component system transcriptional RES	99.7
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.7
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.69
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.68
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.68
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.68
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.67
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.67
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.67
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.66
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.66
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.66
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.66
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.64
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.63
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.62
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.62
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.61
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.6
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.5
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.49
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.47
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.42
3f8t_A	506	Predicted ATPase involved in replication control,	99.27
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.98
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.88
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.88
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.86
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	98.86
2fna_A	357	Conserved hypothetical protein; structural genomic	98.78
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	98.76
2qgz_A	308	Helicase loader, putative primosome component; str	98.72
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.63
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.55
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.48
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.44
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.43
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.41
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.33
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.12
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.08
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.0
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.86
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.85
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.79
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.7
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.69
3kw6_A	78	26S protease regulatory subunit 8; structural geno	97.67
2krk_A	86	26S protease regulatory subunit 8; structural geno	97.66
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.62
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.57
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.54
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.38
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.36
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.36
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.34
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.32
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.31
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.3
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.27
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.25
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.21
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.2
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.19
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.18
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.18
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.18
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.17
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.17
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.17
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.16
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.16
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.15
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.14
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.14
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.13
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.12
1via_A	175	Shikimate kinase; structural genomics, transferase	97.11
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.08
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.08
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.08
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.08
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.06
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.05
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.04
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.03
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.03
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.01
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.99
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.99
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.99
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.98
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.98
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.97
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.97
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.96
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.96
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.96
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.96
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.95
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.93
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.93
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.93
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.91
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.9
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.9
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.89
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.89
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.88
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.88
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.88
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.88
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.87
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.85
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.85
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	96.82
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.82
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.81
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.81
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.8
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.79
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.79
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.78
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.77
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.76
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	96.76
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.74
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.71
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.7
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.69
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.68
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.67
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.66
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.65
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.63
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.62
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.61
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.6
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.6
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.6
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.59
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.57
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.56
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.52
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.52
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.51
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.47
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.47
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.46
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.46
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.44
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.43
3io5_A	333	Recombination and repair protein; storage dimer, i	96.42
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.4
3b6e_A	216	Interferon-induced helicase C domain-containing P;	96.37
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.36
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.36
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.33
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.29
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.29
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.26
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.25
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	96.21
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.14
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.14
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.13
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.12
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.11
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.09
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.09
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	96.07
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.05
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.05
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.03
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.03
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.02
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.0
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	96.0
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.97
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.96
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.94
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.94
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	95.86
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.86
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.84
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	95.83
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.81
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.81
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.81
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	95.8
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.79
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.74
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.73
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.73
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	95.71
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.7
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.69
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.69
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.67
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.65
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.64
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	95.63
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	95.61
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.58
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.58
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.57
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.57
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.54
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	95.54
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.52
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	95.51
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	95.51
3bor_A	237	Human initiation factor 4A-II; translation initiat	95.51
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.51
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.46
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.43
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.4
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.37
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.32
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.32
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.32
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.31
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.27
3h1t_A	590	Type I site-specific restriction-modification syst	95.25
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	95.25
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	95.24
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.22
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.21
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	95.2
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.19
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.17
2og2_A	359	Putative signal recognition particle receptor; nuc	95.14
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.14
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.13
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.13
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.12
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	95.1
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.1
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.1
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	95.08
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	95.07
2xxa_A	433	Signal recognition particle protein; protein trans	95.0
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	94.99
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	94.96
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.96
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	94.96
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.94
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	94.94
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	94.89
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	94.85
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.85
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	94.83
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	94.83
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	94.82
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.79
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	94.78
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.76
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	94.73
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.7
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	94.69
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.67
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.63
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	94.57
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.53
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.5
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.44
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.44
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	94.33
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.31
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	94.3
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	94.3
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.29
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	94.27
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	94.24
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.22
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.16
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	94.15
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	94.14
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.1
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.1
3ice_A	422	Transcription termination factor RHO; transcriptio	94.08
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	94.08
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.04
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.01
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	93.95
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.8
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.72
1qzm_A	94	ATP-dependent protease LA; oligomerization domain,	93.71
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.67
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	93.65
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.64
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.63
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.6
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	93.55
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.54
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.53
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	93.48
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.47
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.45
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	93.44
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	93.42
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	93.4
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	93.34
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.32
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.32
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.32
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.32
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.32
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.31
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	93.27
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.25
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.23
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.17
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.16
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.11
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.1
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.06
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.06
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.03
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.99

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-37  Score=292.49  Aligned_cols=236  Identities=19%  Similarity=0.280  Sum_probs=194.7

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++|+|.++++++|++   .+.+|..+++.+...+..+|.++|||||||||||++|+++|.+++.       +|+.+
T Consensus       144 ~v~~~dIgGl~~~k~~l~e---~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------~f~~v  213 (405)
T 4b4t_J          144 DSTYDMVGGLTKQIKEIKE---VIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------KFIRV  213 (405)
T ss_dssp             SCCGGGSCSCHHHHHHHHH---HTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCCHHHhCCHHHHHHHHHH---HHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-------CceEE
Confidence            4578999999999999998   4667777888877778889999999999999999999999999988       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a  314 (445)
                      +++++.++|+|++++.++.+|..|   .+|||||||||.++++|..++.   ......+++||..||+    ..++||+|
T Consensus       214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaA  293 (405)
T 4b4t_J          214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMA  293 (405)
T ss_dssp             EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEE
T ss_pred             EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEec
Confidence            999999999999999999999877   4699999999999998865432   2345678889988875    56788888


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |+.....     ||+|+|  |||..|+||.|+.++|.+||+.++++.         .+..+++.+.++..+.++      
T Consensus       294 TNrpd~L-----DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~l~~dvdl~~lA~~t~G~------  353 (405)
T 4b4t_J          294 TNRLDIL-----DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM---------NLTRGINLRKVAEKMNGC------  353 (405)
T ss_dssp             ESCSSSS-----CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------BCCSSCCHHHHHHHCCSC------
T ss_pred             cCChhhC-----CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHCCCC------
Confidence            7765443     999998  999999999999999999999999875         456677777777655444      


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                         +++++++++..|......         ++...|+.+||..|++++.+
T Consensus       354 ---SGADi~~l~~eA~~~Air---------~~~~~vt~~Df~~Al~~v~~  391 (405)
T 4b4t_J          354 ---SGADVKGVCTEAGMYALR---------ERRIHVTQEDFELAVGKVMN  391 (405)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH---------TTCSBCCHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHhC
Confidence               478888888877332211         12347999999999988754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-36  Score=286.24  Aligned_cols=237  Identities=20%  Similarity=0.295  Sum_probs=192.8

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ....|++|+|.++++++|++.   +.+|..+++.+...+..+|.++|||||||||||++|+++|.+++.       +|+.
T Consensus       177 p~v~~~DIgGld~~k~~L~e~---v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-------~fi~  246 (437)
T 4b4t_I          177 PTESYSDIGGLESQIQEIKES---VELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-------TFLR  246 (437)
T ss_dssp             CCCCGGGTCSCHHHHHHHHHH---HHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-------EEEE
T ss_pred             CCCcceecCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-------CEEE
Confidence            345789999999999999984   556666667666677788999999999999999999999999988       9999


Q ss_pred             eecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCC---chhHHHHHHHHHhhccC----CcEEEEE
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIF  313 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~~~~i~  313 (445)
                      ++++++.++|+|++++.++.+|..|   .+|||||||||.++++|..++   .......+..||..|+.    ..++||+
T Consensus       247 v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIa  326 (437)
T 4b4t_I          247 IVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIM  326 (437)
T ss_dssp             EESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEE
T ss_pred             EEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEE
Confidence            9999999999999999999999877   469999999999999886432   23345667788888863    5688888


Q ss_pred             ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      ||+....     +||+|+|  |||..|+|+.|+.++|.+||+.++++.         .++.+++.+.++..+.++     
T Consensus       327 ATNrpd~-----LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~---------~l~~dvdl~~LA~~T~Gf-----  387 (437)
T 4b4t_I          327 ATNKIET-----LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM---------NLSEDVNLETLVTTKDDL-----  387 (437)
T ss_dssp             EESCSTT-----CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS---------CBCSCCCHHHHHHHCCSC-----
T ss_pred             eCCChhh-----cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCCCC-----
Confidence            8776544     3999998  999999999999999999999999875         456677777777655444     


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                          +++++++++..|......         ++...|+.+||.+|++++.+
T Consensus       388 ----SGADI~~l~~eA~~~Air---------~~~~~It~eDf~~Al~rv~~  425 (437)
T 4b4t_I          388 ----SGADIQAMCTEAGLLALR---------ERRMQVTAEDFKQAKERVMK  425 (437)
T ss_dssp             ----CHHHHHHHHHHHHHHHHH---------TTCSCBCHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHHHHHHH---------cCCCccCHHHHHHHHHHHhC
Confidence                478888888877332211         12346999999999998765

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-35  Score=283.11  Aligned_cols=235  Identities=20%  Similarity=0.263  Sum_probs=190.9

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++|+|.++++++|++.   +.++..+++.+..++..+|.++|||||||||||++|++||.+++.       +|+.+
T Consensus       205 ~vt~~DIgGl~~~k~~L~e~---V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-------~fi~v  274 (467)
T 4b4t_H          205 DVTYSDVGGCKDQIEKLREV---VELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-------TFIRV  274 (467)
T ss_dssp             SCCCSSCTTCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCCHHHhccHHHHHHHHHHH---HHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-------CeEEE
Confidence            35688999999999999984   556677777776777889999999999999999999999999988       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a  314 (445)
                      +++++.++|+|++++.++.+|..|   .+|||||||+|.++++|.+++.   ......+..+|..|+.    ..++||+|
T Consensus       275 s~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaA  354 (467)
T 4b4t_H          275 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA  354 (467)
T ss_dssp             EGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEE
T ss_pred             EhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeC
Confidence            999999999999999999999877   4699999999999998865432   2334567778888874    56888888


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |+....     +||+|+|  |||+.|+|+.|+.++|.+||+.++++.         .+..+++.+.++..+.++      
T Consensus       355 TNrpd~-----LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~---------~l~~dvdl~~LA~~T~Gf------  414 (467)
T 4b4t_H          355 TNRPNT-----LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM---------SVERGIRWELISRLCPNS------  414 (467)
T ss_dssp             CSCTTS-----BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS---------CBCSSCCHHHHHHHCCSC------
T ss_pred             CCCccc-----CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHHCCCC------
Confidence            776543     3999998  999999999999999999999999875         445677777777655444      


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                         +++++++++..|......         ++...|+.+||.+|++++.
T Consensus       415 ---SGADI~~l~~eAa~~Air---------~~~~~it~~Df~~Al~kV~  451 (467)
T 4b4t_H          415 ---TGAELRSVCTEAGMFAIR---------ARRKVATEKDFLKAVDKVI  451 (467)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH---------HTCSSBCHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHHHH---------cCCCccCHHHHHHHHHHHh
Confidence               478888888777332211         1234699999999998764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-35  Score=284.41  Aligned_cols=237  Identities=21%  Similarity=0.268  Sum_probs=192.5

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++|+|.+++++.|++.   +.+|..+++.+...+..+|.++|||||||||||++|++||.+++.       +|+.+
T Consensus       177 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-------~~~~v  246 (437)
T 4b4t_L          177 EITFDGIGGLTEQIRELREV---IELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-------NFIFS  246 (437)
T ss_dssp             SSCSGGGCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCChhHhCChHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEE
Confidence            45689999999999999984   566777777777777889999999999999999999999999988       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCC---chhHHHHHHHHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~~~~i~a  314 (445)
                      +++++.++|+|+++..++.+|..|   .+|||||||||.++++|.+++   .......++.||..|++    +.++||+|
T Consensus       247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~A  326 (437)
T 4b4t_L          247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMA  326 (437)
T ss_dssp             EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEE
T ss_pred             ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEe
Confidence            999999999999999999999877   579999999999999886433   23345677889998875    46788888


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |+....     +||+|+|  |||..|+||.|+.++|.+||+.++++.         .+..+++.+.++..+.++      
T Consensus       327 TNrp~~-----LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~~~~d~dl~~lA~~t~G~------  386 (437)
T 4b4t_L          327 TNRPDT-----LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV---------KKTGEFDFEAAVKMSDGF------  386 (437)
T ss_dssp             ESSTTS-----SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS---------CBCSCCCHHHHHHTCCSC------
T ss_pred             cCCchh-----hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhCCCC------
Confidence            776543     3999987  699999999999999999999999875         345667777766554433      


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHhc
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                         +++++++++..|......         ++...|+.+||.+|++++.+.
T Consensus       387 ---sGADi~~l~~eA~~~air---------~~~~~i~~~d~~~Al~~v~~~  425 (437)
T 4b4t_L          387 ---NGADIRNCATEAGFFAIR---------DDRDHINPDDLMKAVRKVAEV  425 (437)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHHHHHT
T ss_pred             ---CHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHHHhc
Confidence               478888888877332211         123369999999999988763

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-35  Score=286.72  Aligned_cols=236  Identities=21%  Similarity=0.274  Sum_probs=191.8

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++|+|.++++++|++   .+.+|..+++.+...+..+|.++|||||||||||++|+++|.+++.       +|+.+
T Consensus       177 ~~t~~digGl~~~k~~l~e---~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-------~f~~v  246 (434)
T 4b4t_M          177 TETYSDVGGLDKQIEELVE---AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-------TFLKL  246 (434)
T ss_dssp             SCCGGGSCSCHHHHHHHHH---HTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCChHhcCcHHHHHHHHHH---HHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-------CEEEE
Confidence            4578999999999999998   4666777777777777889999999999999999999999999988       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a  314 (445)
                      +++++.++|+|++++.++.+|..|   .+|||||||||.++++|.+...   ......+..||..|++    .+++||+|
T Consensus       247 ~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaa  326 (434)
T 4b4t_M          247 AAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA  326 (434)
T ss_dssp             EGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEE
T ss_pred             ehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence            999999999999999999999876   5799999999999998864332   2334567788888875    45788888


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      |+....     +||+|+|  |||..|+||.|+.++|.+||+.++++.         .+..+++.+.++..+.++      
T Consensus       327 TNrp~~-----LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~~~~dvdl~~lA~~t~G~------  386 (434)
T 4b4t_M          327 TNRVDV-----LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM---------TTDDDINWQELARSTDEF------  386 (434)
T ss_dssp             CSSCCC-----CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS---------CBCSCCCHHHHHHHCSSC------
T ss_pred             CCCchh-----cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCCCC------
Confidence            766543     3999988  999999999999999999999999875         445677777776555444      


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                         +++++++++..|......         .+...|+.+||.+|++++.|
T Consensus       387 ---sGADi~~l~~eA~~~a~r---------~~~~~i~~~Df~~Al~~v~~  424 (434)
T 4b4t_M          387 ---NGAQLKAVTVEAGMIALR---------NGQSSVKHEDFVEGISEVQA  424 (434)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH---------HTCSSBCHHHHHHHHHSCSS
T ss_pred             ---CHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHhC
Confidence               478888888877332221         12346999999999987654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-34  Score=276.45  Aligned_cols=234  Identities=20%  Similarity=0.267  Sum_probs=189.6

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++++|.+++|++|++.   +.++..+++.+...+..+|.++|||||||||||++|+++|.+++.       +|+.+
T Consensus       168 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-------~~~~v  237 (428)
T 4b4t_K          168 DVTYADVGGLDMQKQEIREA---VELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-------AFIRV  237 (428)
T ss_dssp             SCCGGGSCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCCHHHhccHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEE
Confidence            35689999999999999984   455666677766677789999999999999999999999999988       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEe
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA  314 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a  314 (445)
                      +++++.++|+|+++..++.+|..|   .+|||||||+|.++++|...   +.....++++.||..|++    ..++||+|
T Consensus       238 ~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~a  317 (428)
T 4b4t_K          238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMA  317 (428)
T ss_dssp             EGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEE
T ss_pred             ecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence            999999999999999999999877   46999999999999987532   233456788899998874    56888888


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCC-CCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFN-DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~-~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      |+....     +||+|+|  |||..|+|| .|+.++|.+|++.++++.         .+.++++.+.++..+.++     
T Consensus       318 TN~~~~-----LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~---------~l~~~~dl~~lA~~t~G~-----  378 (428)
T 4b4t_K          318 TNRADT-----LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM---------SLAPEADLDSLIIRNDSL-----  378 (428)
T ss_dssp             ESCSSS-----CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS---------CBCTTCCHHHHHHHTTTC-----
T ss_pred             cCChhh-----cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHHCCCC-----
Confidence            776543     3999998  999999997 799999999999999875         445677777777655444     


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                          +++++++++..|.-....         ++...|+.+||.+|+...
T Consensus       379 ----sgadi~~l~~eA~~~a~r---------~~~~~i~~~d~~~A~~~~  414 (428)
T 4b4t_K          379 ----SGAVIAAIMQEAGLRAVR---------KNRYVILQSDLEEAYATQ  414 (428)
T ss_dssp             ----CHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHHHHHHH---------CCCCCCCHHHHHHHHHHh
Confidence                477888888877332211         123479999999999764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.97  E-value=7.4e-30  Score=242.11  Aligned_cols=260  Identities=37%  Similarity=0.563  Sum_probs=206.7

Q ss_pred             HHHHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316          162 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  240 (445)
Q Consensus       162 ~~~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~  240 (445)
                      .+....++ +++|++++++.|.+++.....+..+...+.... .++.++||+||||||||++|+++++.+...+.....+
T Consensus        23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~  101 (309)
T 3syl_A           23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGH  101 (309)
T ss_dssp             HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCC
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCc
Confidence            34455566 699999999999998887777777777666543 4566899999999999999999999998877777789


Q ss_pred             eEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCch
Q 013316          241 VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSE  318 (445)
Q Consensus       241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~  318 (445)
                      ++.++++.+.+.++|++...+...|..+.++||||||+|.+.+.+++  .+...++++.|+..++.  ..+++|++++..
T Consensus       102 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~  179 (309)
T 3syl_A          102 LVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNRDDLVVILAGYAD  179 (309)
T ss_dssp             EEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred             EEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence            99999999999999999999999999999999999999999875543  33456788999999986  468889998887


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHH-HhhhcccCc
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRREMNG  397 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~n~  397 (445)
                      ....+...+|+|++||+..+.|++|+.+++.+|++.++.+..           ..++++++..+...... ....+++|+
T Consensus       180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~gn~  248 (309)
T 3syl_A          180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----------YQMTPEAETALRAYIGLRRNQPHFANA  248 (309)
T ss_dssp             HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHHHHHHHTTSSSCCHH
T ss_pred             HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHHhccCCCCCcH
Confidence            777777779999999999999999999999999999998742           24556666655433110 112458999


Q ss_pred             hhhHHHHHHHHHhhhhhhcc---CCCChhhhhhccHHHHHH
Q 013316          398 GLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEA  435 (445)
Q Consensus       398 r~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~d~~~  435 (445)
                      |+++++++++......|...   .....++..+|+.+|+..
T Consensus       249 r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~~d~~~  289 (309)
T 3syl_A          249 RSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRA  289 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccHHHhcc
Confidence            99999999998877776643   233456677888888865

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.97  E-value=2.2e-31  Score=276.15  Aligned_cols=246  Identities=20%  Similarity=0.302  Sum_probs=200.2

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++|.|.++++++|++.   +.+|+.+++.+..++..+|.+||||||||||||++||++|++++.       +|+.+
T Consensus       200 ~v~~~dIgGl~~~~~~l~e~---v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------~~~~v  269 (806)
T 3cf2_A          200 EVGYDDIGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLI  269 (806)
T ss_dssp             SCCGGGCCSCCTTHHHHHHH---HHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-------EEEEE
T ss_pred             CCChhhhcCHHHHHHHHHHH---HHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------eEEEE
Confidence            34688999999999999984   567788899999999999999999999999999999999999877       99999


Q ss_pred             ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS  317 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~  317 (445)
                      +++++.++|+|+++..++.+|+.|.   ++||||||||.|++++++.+++...+++++|+..|++    +.++||++|+.
T Consensus       270 ~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~  349 (806)
T 3cf2_A          270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR  349 (806)
T ss_dssp             EHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSS
T ss_pred             EhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCC
Confidence            9999999999999999999999884   6999999999999998877777888999999999874    56888888776


Q ss_pred             hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ...     +||+|++  ||++.|+|+.|+.++|.+|++.++++.         .+..+++.+.++..+..++        
T Consensus       350 ~d~-----LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~---------~~~~dvdl~~lA~~T~Gfs--------  407 (806)
T 3cf2_A          350 PNS-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETHGHV--------  407 (806)
T ss_dssp             TTT-----SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS---------EECTTCCHHHHHHHCCSCC--------
T ss_pred             hhh-----cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhcCCCC--------
Confidence            543     3999999  999999999999999999999988765         4456777777776655544        


Q ss_pred             CchhhHHHHHHHHHhhhhhhc----c--CCCC--hhhhhhccHHHHHHHHHHHHhc
Q 013316          396 NGGLVDPMLVNARENLDLRLS----F--DCLD--TDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       396 n~r~l~~~~~~~~~~~~~~~~----~--~~~~--~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                       ++++.+++.+|......|..    .  ....  ..+...|+.+||..|++.+.|.
T Consensus       408 -gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps  462 (806)
T 3cf2_A          408 -GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS  462 (806)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred             -HHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCc
Confidence             56677777666443333221    1  1111  1235678999999999876654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.97  E-value=2.4e-32  Score=283.32  Aligned_cols=243  Identities=17%  Similarity=0.259  Sum_probs=159.4

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++++++.|.+   .+.++..+++.+...+..++.++|||||||||||++|+++|.+++.       +|+.++.
T Consensus       475 ~w~diggl~~~k~~l~e---~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~~  544 (806)
T 3cf2_A          475 TWEDIGGLEDVKRELQE---LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG  544 (806)
T ss_dssp             CSTTCCSCHHHHHHHTT---TTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECCH
T ss_pred             CHHHhCCHHHHHHHHHH---HHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEecc
Confidence            46789999999999988   4566777788888888889999999999999999999999999887       9999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      +++.++|+|++++.++++|+.|   .+|||||||||+++++|+..   ++....+++++||..|++    ..++||+||+
T Consensus       545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN  624 (806)
T 3cf2_A          545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN  624 (806)
T ss_dssp             HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-C
T ss_pred             chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCC
Confidence            9999999999999999999888   46999999999999988632   344556889999999985    4577777766


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ....     +||+++|  |||+.|+||.|+.++|.+|++.++++.         .+..+++.+.++..+.+++       
T Consensus       625 ~p~~-----lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~---------~~~~~~dl~~la~~t~g~S-------  683 (806)
T 3cf2_A          625 RPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---------PVAKDVDLEFLAKMTNGFS-------  683 (806)
T ss_dssp             CSSS-----SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------CCC---------------------
T ss_pred             Cchh-----CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHhCCCCC-------
Confidence            5543     3999999  999999999999999999999988764         4456777788888887777       


Q ss_pred             cCchhhHHHHHHHHHhhhhhhcc----------------CCCChhhhhhccHHHHHHHHHHHHh
Q 013316          395 MNGGLVDPMLVNARENLDLRLSF----------------DCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                        ++++.+++..|......+...                .....+..+.|+.+||.+|++.++|
T Consensus       684 --Gadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p  745 (806)
T 3cf2_A          684 --GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR  745 (806)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence              555666665553322211100                0011223457999999999988876

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.7e-28  Score=231.80  Aligned_cols=210  Identities=18%  Similarity=0.234  Sum_probs=165.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHH-HHcCCCCCCCeEEee
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEVQ  245 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~-~~~~~~~~~~~~~~~  245 (445)
                      .|++|+|++.+++.|++.+   .++..+++.+.. ...++.++||+||||||||++|+++|+.+ +.       +|+.++
T Consensus        10 ~~~di~G~~~~k~~l~~~v---~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-------~~~~i~   78 (322)
T 1xwi_A           10 KWSDVAGLEGAKEALKEAV---ILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNS-------TFFSIS   78 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHH---HHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC-------EEEEEE
T ss_pred             CHHHhcCHHHHHHHHHHHH---HHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCC-------cEEEEE
Confidence            5788999999999999854   456666666543 24567899999999999999999999987 33       899999


Q ss_pred             cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCc
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS  317 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~  317 (445)
                      ++++.+.|+|+++..++.+|..+   .++||||||||.+.++++........++++.|+..|++     ..+++|++|+.
T Consensus        79 ~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~  158 (322)
T 1xwi_A           79 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI  158 (322)
T ss_dssp             CCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence            99999999999999999988765   46899999999999988766666777888999988864     56888888765


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ...     .+|++++||+..++++.|+.+++.+|++.++.+..           ..++...+..+. ..+.     ..++
T Consensus       159 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la-~~t~-----G~sg  216 (322)
T 1xwi_A          159 PWV-----LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-----------NSLTEADFRELG-RKTD-----GYSG  216 (322)
T ss_dssp             TTT-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-----------BCCCHHHHHHHH-HTCT-----TCCH
T ss_pred             ccc-----CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHH-HHcC-----CCCH
Confidence            532     38999999999999999999999999999987642           123444555333 3321     3457


Q ss_pred             hhhHHHHHHHHH
Q 013316          398 GLVDPMLVNARE  409 (445)
Q Consensus       398 r~l~~~~~~~~~  409 (445)
                      +++++++..|..
T Consensus       217 adl~~l~~~A~~  228 (322)
T 1xwi_A          217 ADISIIVRDALM  228 (322)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            788888877643

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.96  E-value=1e-28  Score=235.27  Aligned_cols=209  Identities=17%  Similarity=0.231  Sum_probs=160.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.|.+.   +.++..+++.... ...++.++||+||||||||++|+++|+.++.       +|+.+++
T Consensus        16 ~~~di~G~~~~~~~l~~~---i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~v~~   84 (322)
T 3eie_A           16 KWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSS   84 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHH---THHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-------EEEEEEH
T ss_pred             CHHHhcChHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-------CEEEEch
Confidence            478899999999999985   4455556665544 3456789999999999999999999999876       8999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCch
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSE  318 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~~  318 (445)
                      +++.+.|+|++...++.+|..+   .++||||||||.+.++++....+...++++.|+..++.     ..+++|++|+..
T Consensus        85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~  164 (322)
T 3eie_A           85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP  164 (322)
T ss_dssp             HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred             HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence            9999999999999999988776   45899999999999987655556667888888888863     567888777654


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  398 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r  398 (445)
                      ..     .+|++++||+..++|+.|+.+++.+|++.++.+..           ..++.+.+..+.. .+     ...+++
T Consensus       165 ~~-----ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~l~~la~-~t-----~g~sg~  222 (322)
T 3eie_A          165 WQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------CVLTKEDYRTLGA-MT-----EGYSGS  222 (322)
T ss_dssp             GG-----SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC-----------CCCCHHHHHHHHH-TT-----TTCCHH
T ss_pred             hh-----CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC-----------CCCCHHHHHHHHH-Hc-----CCCCHH
Confidence            32     38999999999999999999999999999987642           1334445554433 22     134678


Q ss_pred             hhHHHHHHHH
Q 013316          399 LVDPMLVNAR  408 (445)
Q Consensus       399 ~l~~~~~~~~  408 (445)
                      ++++++..|.
T Consensus       223 di~~l~~~a~  232 (322)
T 3eie_A          223 DIAVVVKDAL  232 (322)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            8888887663

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.96  E-value=3.5e-28  Score=234.16  Aligned_cols=245  Identities=16%  Similarity=0.190  Sum_probs=178.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++|+|++.+++.|.+.   +..+..+++.+.. ...++.++||+||||||||++|+++|+.++.       +|+.++
T Consensus        48 ~~~~di~G~~~~~~~l~~~---v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~v~  116 (355)
T 2qp9_X           48 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS  116 (355)
T ss_dssp             CCGGGSCCGGGHHHHHHHH---THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred             CCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEee
Confidence            4678899999999999885   4445555555443 3456789999999999999999999999876       899999


Q ss_pred             cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc-----CCcEEEEEecCc
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-----GGKVVVIFAGYS  317 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~i~a~~~  317 (445)
                      ++++.+.|+|+++..++.+|..+   .++||||||||.+.+.++........++++.|+..|+     ...+++|++|+.
T Consensus       117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~  196 (355)
T 2qp9_X          117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI  196 (355)
T ss_dssp             HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred             HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence            99999999999999999998776   5799999999999988766556677788888988886     356788888766


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ..     ..+|++++||+..++|+.|+.+++.+|++.++.+..           ..++...+..+. ..+.     ..++
T Consensus       197 ~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~~~~~~l~~la-~~t~-----G~sg  254 (355)
T 2qp9_X          197 PW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------SVLTKEDYRTLG-AMTE-----GYSG  254 (355)
T ss_dssp             GG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------BCCCHHHHHHHH-HHTT-----TCCH
T ss_pred             cc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC-----------CCCCHHHHHHHH-HHcC-----CCCH
Confidence            43     238999999999999999999999999999988642           123444555443 3331     2468


Q ss_pred             hhhHHHHHHHHHhhhhhhccC--------------------------------CCCh--hhhhhccHHHHHHHHHHHHhc
Q 013316          398 GLVDPMLVNARENLDLRLSFD--------------------------------CLDT--DELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       398 r~l~~~~~~~~~~~~~~~~~~--------------------------------~~~~--~~~~~i~~~d~~~a~~~~~~~  443 (445)
                      +++++++.+|......+....                                ....  .....|+.+||.+|++.+.|.
T Consensus       255 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps  334 (355)
T 2qp9_X          255 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT  334 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCC
Confidence            888898888755433332100                                0000  113469999999999987763

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.95  E-value=9.1e-29  Score=233.22  Aligned_cols=243  Identities=17%  Similarity=0.270  Sum_probs=178.3

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++++++.|.+++..   +..+++.+...+..++.+++|+||||||||++|+++|..++.       +|+.+++
T Consensus        13 ~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v~~   82 (301)
T 3cf0_A           13 TWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG   82 (301)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred             CHHHhCCHHHHHHHHHHHHHH---HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEEEh
Confidence            477899999999999986543   333343333344567789999999999999999999998765       8999999


Q ss_pred             ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      +++.+.|+|+++..++.+|..+.   ++||||||||.+.+.++..   ......++++.|+..|++    .++++|++|+
T Consensus        83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn  162 (301)
T 3cf0_A           83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN  162 (301)
T ss_dssp             HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred             HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence            99999999999999999998774   5899999999998765422   123334677888888863    5688888877


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ....     .+|++++  ||+..++|+.|+.+++.+|+++++++..         +..+++.+.++..+.         .
T Consensus       163 ~~~~-----ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---------~~~~~~~~~la~~~~---------g  219 (301)
T 3cf0_A          163 RPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN---------G  219 (301)
T ss_dssp             CGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHTCS---------S
T ss_pred             Cccc-----cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---------CCccchHHHHHHHcC---------C
Confidence            6543     3899988  9999999999999999999999998752         234566666554322         2


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCC-------------C---ChhhhhhccHHHHHHHHHHHHh
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDC-------------L---DTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                      .+++++++++++|......+.....             .   .......|+.+||.+|++.+.|
T Consensus       220 ~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~  283 (301)
T 3cf0_A          220 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR  283 (301)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCC
Confidence            2355888988887654433221000             0   0112357999999999987644

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.95  E-value=1e-27  Score=238.69  Aligned_cols=244  Identities=20%  Similarity=0.271  Sum_probs=186.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++|+|+++.+++|++++..   +..+++.+...+..++.++||+||||||||++|++||..++.       +|+.++|
T Consensus       202 ~~~~i~G~~~~~~~l~~~i~~---~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~vn~  271 (489)
T 3hu3_A          202 GYDDIGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING  271 (489)
T ss_dssp             CGGGCCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEEEEH
T ss_pred             CHHHcCCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEEEEc
Confidence            467899999999999986543   333344433445677889999999999999999999998755       9999999


Q ss_pred             ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCchh
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP  319 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~~  319 (445)
                      +++.+.++|+....++.+|..+.   ++||||||||.+.++++....+...++++.|+..|+.    ..+++|++|+...
T Consensus       272 ~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~  351 (489)
T 3hu3_A          272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN  351 (489)
T ss_dssp             HHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred             hHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence            99999999999999999998874   3699999999999988877778888999999999873    5688888877653


Q ss_pred             HHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          320 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       320 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      .     .+|++++  ||+..++|+.|+.+++.+|++.+++..         .+..+.+.+.+...+.         ..++
T Consensus       352 ~-----Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~---------~l~~~~~l~~la~~t~---------g~s~  408 (489)
T 3hu3_A          352 S-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETH---------GHVG  408 (489)
T ss_dssp             G-----BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS---------CBCTTCCHHHHHHTCT---------TCCH
T ss_pred             c-----cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC---------CCcchhhHHHHHHHcc---------CCcH
Confidence            2     3899998  999999999999999999999988764         2333444444443322         2346


Q ss_pred             hhhHHHHHHHHHhhhhhhccC------CCC--hhhhhhccHHHHHHHHHHHHhc
Q 013316          398 GLVDPMLVNARENLDLRLSFD------CLD--TDELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       398 r~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~~i~~~d~~~a~~~~~~~  443 (445)
                      +++.+++.+|......+....      ...  ......|+.+||.+|++.+.|.
T Consensus       409 ~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps  462 (489)
T 3hu3_A          409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS  462 (489)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence            788888887755443332111      011  1234579999999999988764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.94  E-value=9.4e-27  Score=230.61  Aligned_cols=211  Identities=18%  Similarity=0.232  Sum_probs=155.3

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHH-HHcCCCCCCCeEEe
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEV  244 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~-~~~~~~~~~~~~~~  244 (445)
                      ..|++|+|++.+++.|.+.+   ..+..+++.+.. ...++.++||+||||||||++|+++|..+ +.       +|+.+
T Consensus       131 ~~~~di~G~~~~k~~l~~~v---~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~-------~~~~v  199 (444)
T 2zan_A          131 VKWSDVAGLEGAKEALKEAV---ILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNS-------TFFSI  199 (444)
T ss_dssp             CCGGGSCSCHHHHHHHHHHH---THHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS-------EEEEE
T ss_pred             CCHHHhcCHHHHHHHHHHHH---HHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCC-------CEEEE
Confidence            35788999999999998853   445455554432 23467899999999999999999999987 33       89999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecC
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGY  316 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~  316 (445)
                      +++++.+.|+|++...++.+|..+   .++||||||||.+.+.++........++++.|+..|++     ..++||++|+
T Consensus       200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn  279 (444)
T 2zan_A          200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN  279 (444)
T ss_dssp             CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred             eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence            999999999999988888888765   46999999999999888766667777899999999864     5678888876


Q ss_pred             chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316          317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  396 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n  396 (445)
                      ....     .+|++++||+..+.++.|+.+++.+|++.++.+..           ..++...+..+. ..+.     ..+
T Consensus       280 ~~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la-~~t~-----G~s  337 (444)
T 2zan_A          280 IPWV-----LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-----------NSLTEADFQELG-RKTD-----GYS  337 (444)
T ss_dssp             CGGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------EECCHHHHHHHH-HHTT-----TCC
T ss_pred             Cccc-----cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHH-HHcC-----CCC
Confidence            6532     38999999999999999999999999999987642           123344444333 3331     235


Q ss_pred             chhhHHHHHHHHH
Q 013316          397 GGLVDPMLVNARE  409 (445)
Q Consensus       397 ~r~l~~~~~~~~~  409 (445)
                      ++++.+++..|..
T Consensus       338 gadl~~l~~~a~~  350 (444)
T 2zan_A          338 GADISIIVRDALM  350 (444)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            7778888776643

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.94  E-value=2.2e-26  Score=227.11  Aligned_cols=231  Identities=23%  Similarity=0.310  Sum_probs=175.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++++++++.+++.....+....    .++...|.+++|+||||||||++|+++|..++.       +|+.+++
T Consensus        14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~----~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-------~f~~is~   82 (476)
T 2ce7_A           14 TFKDVGGAEEAIEELKEVVEFLKDPSKFN----RIGARMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHISG   82 (476)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCTHHHH----TTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEEEG
T ss_pred             CHHHhCCcHHHHHHHHHHHHHhhChHHHh----hcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeeeCCH
Confidence            57789999999999999876554333333    344567789999999999999999999998866       9999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      +++...++|.++..++.+|..+   .++||||||||.+.++++.+   ......+.+++|+..|++    ..++||++|+
T Consensus        83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn  162 (476)
T 2ce7_A           83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN  162 (476)
T ss_dssp             GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence            9999999998888889999877   45899999999999877632   233445778889988863    5688888877


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ....     .+|++++  ||+..|.|+.|+.+++.+|++.++++.         .+.++++.+.    ++..|      +
T Consensus       163 ~~~~-----Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~---------~l~~~v~l~~----la~~t------~  218 (476)
T 2ce7_A          163 RPDI-----LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK---------PLAEDVNLEI----IAKRT------P  218 (476)
T ss_dssp             CGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHH----HHHTC------T
T ss_pred             Chhh-----hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC---------CCcchhhHHH----HHHhc------C
Confidence            6543     3888887  999999999999999999999988764         3344544433    34445      6


Q ss_pred             cCc-hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          395 MNG-GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       395 ~n~-r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      ||. +++++++.+|......         .+...|+.+|+.+++..+.
T Consensus       219 G~sgadL~~lv~~Aal~A~~---------~~~~~I~~~dl~~al~~v~  257 (476)
T 2ce7_A          219 GFVGADLENLVNEAALLAAR---------EGRDKITMKDFEEAIDRVI  257 (476)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHHHHHH---------cCCCeecHHHHHHHHHHHh
Confidence            666 8999999988443221         1223689999999988653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=1e-26  Score=199.98  Aligned_cols=139  Identities=28%  Similarity=0.442  Sum_probs=122.5

Q ss_pred             CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      |++|++++..+ .|.||||+|+..++.++++.++. .+++++.++. .|+||||+|+..|+.+++++|++.    |+++|
T Consensus        24 l~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~----gadvn   97 (169)
T 4gpm_A           24 IENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISK----GADVN   97 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTT
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhcc-CCCCHHHHHHHcCCHHHHHHHHHC----cCCCC
Confidence            35789998877 69999999999999999988775 6889999987 799999999999999999999995    88999


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316           80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  146 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~  146 (445)
                      .+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||| ++|+..++.+++++|+++|++..
T Consensus        98 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL-DLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHTC-----
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcC
Confidence            9999999999999999999999999999999999999999999 78888899999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.94  E-value=9.2e-26  Score=208.05  Aligned_cols=231  Identities=20%  Similarity=0.296  Sum_probs=174.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|.+++++++.+.+..+.    .+......+...+.+++|+||||||||++|+++|..++.       +++.+++
T Consensus        10 ~~~~i~G~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~i~~   78 (257)
T 1lv7_A           10 TFADVAGCDEAKEEVAELVEYLR----EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTISG   78 (257)
T ss_dssp             CGGGSCSCHHHHHHTHHHHHHHH----CGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEECS
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHh----CHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------CEEEEeH
Confidence            47889999999999998765432    223333444566789999999999999999999998865       8999999


Q ss_pred             ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      +++...++|.....++.+|+.+.   ++++||||+|.+.+.++..   ......+.++.++..++.    ..+++|++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn  158 (257)
T 1lv7_A           79 SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN  158 (257)
T ss_dssp             CSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEES
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeC
Confidence            99999999998888889998774   4799999999999876532   223334677788877763    5678888876


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ....     .++++++  ||+..+.|+.|+.+++.+|++.++++.         .+.++.+..    .++..|      +
T Consensus       159 ~~~~-----l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~---------~l~~~~~~~----~la~~~------~  214 (257)
T 1lv7_A          159 RPDV-----LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAA----IIARGT------P  214 (257)
T ss_dssp             CTTT-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHH----HHHHTC------T
T ss_pred             Cchh-----CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC---------CCCccccHH----HHHHHc------C
Confidence            6532     3888888  999999999999999999999988764         233443322    344555      6


Q ss_pred             c-CchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          395 M-NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       395 ~-n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      | |+|++++++++|......+         +...|+.+|+.+|++.+.
T Consensus       215 G~~~~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~  253 (257)
T 1lv7_A          215 GFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIM  253 (257)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHh---------CCCcccHHHHHHHHHHHh
Confidence            7 9999999999984433221         224799999999998763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.94  E-value=5.3e-27  Score=217.41  Aligned_cols=250  Identities=18%  Similarity=0.248  Sum_probs=166.5

Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      ...|++++|.++++++|.+.   +..+..+++....++...+.+++|+||||||||++|++|+..++.       +++.+
T Consensus         6 ~~~~~di~g~~~~~~~l~~~---i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------~~i~i   75 (274)
T 2x8a_A            6 NVTWADIGALEDIREELTMA---ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------NFISV   75 (274)
T ss_dssp             ------CCHHHHHHHHHHHH---HTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEE
T ss_pred             CCCHHHhCCHHHHHHHHHHH---HHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-------CEEEE
Confidence            46789999999999999874   334444444433444556778999999999999999999998654       78999


Q ss_pred             ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC----cEEEEEecCc
Q 013316          245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----KVVVIFAGYS  317 (445)
Q Consensus       245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~i~a~~~  317 (445)
                      +++++.+.+.|+....+..+|+.+   .++++|+||+|.+.+.++........+..++++..|+++    .++++++++.
T Consensus        76 ~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~  155 (274)
T 2x8a_A           76 KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR  155 (274)
T ss_dssp             ETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred             EcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence            999998888888888888899876   468999999999987654322222235667788877652    3555556555


Q ss_pred             hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ...     .||++++  ||+..|+|+.|+.+++.+|++.+++....      ..+..+++.+.++....  +     ...
T Consensus       156 p~~-----LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~------~~~~~~~~~~~la~~~~--~-----~g~  217 (274)
T 2x8a_A          156 PDI-----IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK------PPLDADVNLEAIAGDLR--C-----DCY  217 (274)
T ss_dssp             GGG-----SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT------TBBCTTCCHHHHHTCSG--G-----GSC
T ss_pred             hhh-----CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC------CCCccccCHHHHHHhhc--c-----CCc
Confidence            443     2999998  99999999999999999999998764211      13345666666553321  0     123


Q ss_pred             CchhhHHHHHHHHHhhhhhhccC--CCChhhhhhccHHHHHHHHHHHHh
Q 013316          396 NGGLVDPMLVNARENLDLRLSFD--CLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       396 n~r~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                      .++++.+++.+|......+....  .....+...|+.+||.+|++.++|
T Consensus       218 sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p  266 (274)
T 2x8a_A          218 TGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS  266 (274)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence            46777888877754333322111  111223458999999999988765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=3.5e-26  Score=214.17  Aligned_cols=234  Identities=21%  Similarity=0.295  Sum_probs=171.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.++++|.+.+..   +...++.+...+...+.++||+||||||||++|+++++.++.       +++.+++
T Consensus        15 ~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~~   84 (285)
T 3h4m_A           15 RYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVVG   84 (285)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEEG
T ss_pred             CHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeh
Confidence            467899999999999886543   222233222334457789999999999999999999998766       8999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCch---hHHHHHHHHHhhcc----CCcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKD---YGIEALEEIMSVMD----GGKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~---~~~~~~~~ll~~~~----~~~~~~i~a~~  316 (445)
                      +.+.+.+.|.....+..+|..+   .++||||||+|.+.+++++....   .....+..++..++    ...+++|++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn  164 (285)
T 3h4m_A           85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN  164 (285)
T ss_dssp             GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence            9999999998888888888765   45799999999999877654322   22344455555554    24678888876


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ....     .++++++  ||+..+.|+.|+.+++.+|++.++...         .+..+.+.+.+.....         .
T Consensus       165 ~~~~-----l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~l~~~~~---------g  221 (285)
T 3h4m_A          165 RPDI-----LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM---------NLAEDVNLEEIAKMTE---------G  221 (285)
T ss_dssp             CGGG-----BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHHCT---------T
T ss_pred             Cchh-----cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC---------CCCCcCCHHHHHHHcC---------C
Confidence            5432     3888988  999999999999999999999988764         2234444555444332         2


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                      .+++++++++..|......+         ....|+.+|+.++++.+.+
T Consensus       222 ~~~~~i~~l~~~a~~~a~~~---------~~~~I~~~d~~~al~~~~~  260 (285)
T 3h4m_A          222 CVGAELKAICTEAGMNAIRE---------LRDYVTMDDFRKAVEKIME  260 (285)
T ss_dssp             CCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHh---------ccCcCCHHHHHHHHHHHHh
Confidence            35788888888884443322         1236999999999987653

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=216.59  Aligned_cols=243  Identities=17%  Similarity=0.266  Sum_probs=173.1

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.|.+.+.   .+..+++.+... ...+.++||+||||||||++|+++|..++.       +|+.+++
T Consensus        82 ~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~~  150 (357)
T 3d8b_A           82 NWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSISA  150 (357)
T ss_dssp             CGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEEG
T ss_pred             CHHHhCChHHHHHHHHHHHH---HHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEeh
Confidence            56789999999999988543   333344443333 356789999999999999999999998765       8999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEecCc
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYS  317 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~~~  317 (445)
                      +++.+.++|.....++.+|..+   .++||||||||.+.+.++.+......++++.|+..+++      .++++|++|+.
T Consensus       151 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~  230 (357)
T 3d8b_A          151 SSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR  230 (357)
T ss_dssp             GGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred             HHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence            9999999998888888888765   46999999999999877655566677888899888874      46788888766


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ..     ..++++++||+..+.++.|+.+++.+|+..++.+..           ..++.+.+..+.. .+.     ...+
T Consensus       231 ~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~l~~la~-~t~-----G~s~  288 (357)
T 3d8b_A          231 PQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-----------CCLSEEEIEQIVQ-QSD-----AFSG  288 (357)
T ss_dssp             GG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-----------BCCCHHHHHHHHH-HTT-----TCCH
T ss_pred             hh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-----------CCccHHHHHHHHH-HcC-----CCCH
Confidence            43     238999999999999999999999999999887642           1234455554433 221     2246


Q ss_pred             hhhHHHHHHHHHhhhhhhc---cCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          398 GLVDPMLVNARENLDLRLS---FDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       398 r~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                      ++++.++..+.........   .......+...|+.+||.++++.+.|
T Consensus       289 ~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p  336 (357)
T 3d8b_A          289 ADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP  336 (357)
T ss_dssp             HHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence            6777777665321111110   00111234458999999999998876

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.93  E-value=2e-26  Score=213.05  Aligned_cols=235  Identities=18%  Similarity=0.288  Sum_probs=157.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.+.+++.....    ++.+...+...+.+++|+||||||||++|+++|+.++.       +++.+++
T Consensus         4 ~~~~i~G~~~~~~~l~~~~~~~~~----~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~   72 (262)
T 2qz4_A            4 SFKDVAGMHEAKLEVREFVDYLKS----PERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAG   72 (262)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHHHHC----CC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHC----HHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEech
Confidence            467899999999999987654432    23333445567889999999999999999999999876       8999999


Q ss_pred             ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCC----chhHHHHHHHHHhhccC----CcEEEEEec
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG----GKVVVIFAG  315 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~----~~~~~~~~~~ll~~~~~----~~~~~i~a~  315 (445)
                      +++.+.+.|.+...+..+|..+.   ++||||||+|.+..++....    .......+..++..++.    ..+++|+++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~t  152 (262)
T 2qz4_A           73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAST  152 (262)
T ss_dssp             TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred             HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecC
Confidence            99988888888888888887764   79999999999987654321    11222456667766654    467788877


Q ss_pred             CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      +....     .++++++  ||+..++|+.|+.+++.+|+++++.+..         +  ..+.+.....+...+.     
T Consensus       153 n~~~~-----ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---------~--~~~~~~~~~~l~~~~~-----  211 (262)
T 2qz4_A          153 NRADI-----LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK---------L--TQSSTFYSQRLAELTP-----  211 (262)
T ss_dssp             SCGGG-----GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT---------C--CBTHHHHHHHHHHTCT-----
T ss_pred             CChhh-----cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC---------C--CcchhhHHHHHHHHCC-----
Confidence            65432     2788998  9999999999999999999999998652         1  1122222223333321     


Q ss_pred             ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                      ..+++++++++.+|....         ...+...|+.+|+.++++.+.+
T Consensus       212 g~~~~~l~~l~~~a~~~a---------~~~~~~~i~~~d~~~a~~~~~~  251 (262)
T 2qz4_A          212 GFSGADIANICNEAALHA---------AREGHTSVHTLNFEYAVERVLA  251 (262)
T ss_dssp             TCCHHHHHHHHHHHHTC-----------------CCBCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH---------HHcCCCCCCHHHHHHHHHHhcc
Confidence            234678889988873221         1123457999999999987654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.93  E-value=1e-25  Score=220.09  Aligned_cols=243  Identities=22%  Similarity=0.281  Sum_probs=164.4

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++|+|++.+++.|.+++   ..+..+++.+.... .++.++||+||||||||++|++||..++.       +|+.+++
T Consensus       113 ~~~~iiG~~~~~~~l~~~~---~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~  181 (389)
T 3vfd_A          113 KFDDIAGQDLAKQALQEIV---ILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISA  181 (389)
T ss_dssp             CGGGSCSCHHHHHHHHHHT---HHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECS
T ss_pred             ChHHhCCHHHHHHHHHHHH---HHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeH
Confidence            4788999999999998854   33434444444333 45789999999999999999999998765       9999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEecCc
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYS  317 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~~~  317 (445)
                      +.+.+.|+|.....+..+|..+   .++||||||||.+...+.........++++.|+..+++      .++++|++|+.
T Consensus       182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~  261 (389)
T 3vfd_A          182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR  261 (389)
T ss_dssp             CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred             HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence            9999999999988888888766   44899999999998877665566677888888888873      56788888765


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ..     ..++++++||+..+.|+.|+.+++.+|++.++.+..           ..++.+.+..+. ..+.     ..++
T Consensus       262 ~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~~~~la-~~~~-----g~~~  319 (389)
T 3vfd_A          262 PQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-----------SPLTQKELAQLA-RMTD-----GYSG  319 (389)
T ss_dssp             GG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------CCSCHHHHHHHH-HHTT-----TCCH
T ss_pred             ch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH-HHcC-----CCCH
Confidence            43     238999999998999999999999999999887642           234445555433 3332     2345


Q ss_pred             hhhHHHHHHHHHhhhhhhc---cCCCChhhhhhccHHHHHHHHHHHHh
Q 013316          398 GLVDPMLVNARENLDLRLS---FDCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       398 r~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                      +++..++..+......++.   .......+...|+.+||..+++.+.+
T Consensus       320 ~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~  367 (389)
T 3vfd_A          320 SDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR  367 (389)
T ss_dssp             HHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence            6677777655222111110   00111223457999999999876543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.93  E-value=1.4e-25  Score=211.35  Aligned_cols=243  Identities=23%  Similarity=0.314  Sum_probs=169.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++++++.+.+.+.   .+..+++.+.... .++.+++|+||||||||++|+++|..++.       +|+.+++
T Consensus        19 ~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~~   87 (297)
T 3b9p_A           19 EWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNISA   87 (297)
T ss_dssp             CGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEES
T ss_pred             CHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEeeH
Confidence            46789999999999988543   3444444444333 45779999999999999999999998765       8999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------CcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~i~a~~  316 (445)
                      +.+.+.+.|..+...+.+|..+   .++||||||+|.+...++....+.....++.|+..++.       .++++|++|+
T Consensus        88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn  167 (297)
T 3b9p_A           88 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN  167 (297)
T ss_dssp             TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred             HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence            9999999998888777777655   56999999999999877654445556777778777763       3577777766


Q ss_pred             chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316          317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  396 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n  396 (445)
                      ...     ..++++++||+..+.++.|+.+++..|++.++.+..           ..++.+.+..+. ..+.     ..+
T Consensus       168 ~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~~~~la-~~~~-----g~~  225 (297)
T 3b9p_A          168 RPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG-----------SPLDTEALRRLA-KITD-----GYS  225 (297)
T ss_dssp             CGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS-----------CCSCHHHHHHHH-HHTT-----TCC
T ss_pred             Chh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH-HHcC-----CCC
Confidence            543     238999999999999999999999999999887642           134455555443 3331     234


Q ss_pred             chhhHHHHHHHHHhhhhhhcc---CCCChhhhhhccHHHHHHHHHHHHh
Q 013316          397 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       397 ~r~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                      +++++++++.+......+...   ..........|+.+||..|++.+.|
T Consensus       226 ~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  274 (297)
T 3b9p_A          226 GSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRR  274 (297)
T ss_dssp             HHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCC
Confidence            567888887663221111100   0011112347999999998876543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.92  E-value=1.4e-24  Score=210.26  Aligned_cols=255  Identities=20%  Similarity=0.277  Sum_probs=174.1

Q ss_pred             HHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCC--CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316          164 LENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK--VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  240 (445)
Q Consensus       164 ~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~  240 (445)
                      +...+++ ++|++.+++.+...+....   .+...+..  ....++.++||+||||||||++|++||+.++.       +
T Consensus         9 l~~~l~~~i~G~~~~~~~l~~~i~~~~---~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~-------~   78 (363)
T 3hws_A            9 IRNHLDDYVIGQEQAKKVLAVAVYNHY---KRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV-------P   78 (363)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHH---HHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------C
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHHHH---hhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------C
Confidence            3444554 7999999999988654222   22222211  12236779999999999999999999999865       9


Q ss_pred             eEEeeccccccc-ccCCc-hhHHHHHHHH-------ccCcEEEEcCccccccCCCCCC--ch-hHHHHHHHHHhhccCC-
Q 013316          241 VTEVQRTDLVGE-FVGHT-GPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADD--KD-YGIEALEEIMSVMDGG-  307 (445)
Q Consensus       241 ~~~~~~~~l~~~-~~g~~-~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~--~~-~~~~~~~~ll~~~~~~-  307 (445)
                      |+.++++.+... |+|++ ...++..+..       +.++||||||||.+.+.+.+.+  .+ ....+++.|++.|++. 
T Consensus        79 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~  158 (363)
T 3hws_A           79 FTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTV  158 (363)
T ss_dssp             EEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-
T ss_pred             EEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCce
Confidence            999999988754 88875 5556666654       4679999999999998765432  22 2334899999999831 


Q ss_pred             ----------------------cEEEEEecCchhHHHHHh----------------------------------------
Q 013316          308 ----------------------KVVVIFAGYSEPMKRVIA----------------------------------------  325 (445)
Q Consensus       308 ----------------------~~~~i~a~~~~~~~~~~~----------------------------------------  325 (445)
                                            ++++|++++......++.                                        
T Consensus       159 ~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~  238 (363)
T 3hws_A          159 AAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG  238 (363)
T ss_dssp             ---------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHT
T ss_pred             eeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcC
Confidence                                  123444444322221110                                        


Q ss_pred             hCcccccccccceeCCCCCHHHHHHHHHH----HHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhH
Q 013316          326 SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVD  401 (445)
Q Consensus       326 ~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~  401 (445)
                      .+|+|.+||+..+.|++|+.+++.+|+..    ++.+....+...+.  ...++++++.++..+.|    .+++|+|+|+
T Consensus       239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~--~l~~~~~a~~~L~~~~~----~~~~gaR~L~  312 (363)
T 3hws_A          239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGV--DLEFRDEALDAIAKKAM----ARKTGARGLR  312 (363)
T ss_dssp             CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC--EEEECHHHHHHHHHHHH----HTTCTTTTHH
T ss_pred             CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc--eEEECHHHHHHHHHhhc----CCccCchHHH
Confidence            37999999999999999999999999987    55544433332222  33678889888876555    2488999999


Q ss_pred             HHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316          402 PMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG  436 (445)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a  436 (445)
                      +++++++.....+....  +......|+.++|.+.
T Consensus       313 ~~ie~~~~~~l~~~~~~--~~~~~~~I~~~~v~~~  345 (363)
T 3hws_A          313 SIVEAALLDTMYDLPSM--EDVEKVVIDESVIDGQ  345 (363)
T ss_dssp             HHHHHHHHHHHHSTTTC--CCSEEEECHHHHTTCC
T ss_pred             HHHHHHHHHHHHhcccc--cCCceeEEcHHHHhCc
Confidence            99999987765544221  1113457888877643

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.92  E-value=6.8e-25  Score=217.75  Aligned_cols=232  Identities=22%  Similarity=0.303  Sum_probs=175.6

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++++|+++++.++.+++..+.    .+.....++...+.+++|+||||||||++|++||..+..       +|+.++
T Consensus        28 ~~f~dv~G~~~~k~~l~~lv~~l~----~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-------~~i~i~   96 (499)
T 2dhr_A           28 VTFKDVAGAEEAKEELKEIVEFLK----NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS   96 (499)
T ss_dssp             CCTTSSCSCHHHHHHHHHHHHHHH----CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred             CCHHHcCCcHHHHHHHHHHHHHhh----chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEe
Confidence            357889999999999998765432    334455566677889999999999999999999998764       899999


Q ss_pred             cccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEec
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  315 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~  315 (445)
                      ++++...++|.....++.+|+.+.   ++|+||||||.+...++.+   ..+...+.+++|+..|+.    ..+++|+++
T Consensus        97 g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat  176 (499)
T 2dhr_A           97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT  176 (499)
T ss_dssp             GGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred             hhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence            999998888888888889998875   3899999999998876532   234445678888888875    235666666


Q ss_pred             CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      +....     .||++++  ||+..|.|+.|+.+++.+|++.+++..         .+.++++.+    .+++.|      
T Consensus       177 n~p~~-----LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---------~l~~dv~l~----~lA~~t------  232 (499)
T 2dhr_A          177 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA----LLAKRT------  232 (499)
T ss_dssp             SCGGG-----SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---------CCCCSSTTH----HHHTTS------
T ss_pred             CChhh-----cCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---------CCChHHHHH----HHHHhc------
Confidence            55433     3899988  899999999999999999999876542         334444332    344555      


Q ss_pred             ccCc-hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          394 EMNG-GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       394 ~~n~-r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      +||. |+|++++.+|......+         +...|+.+|+.++++.+.
T Consensus       233 ~G~~gadL~~lv~~Aa~~A~~~---------~~~~It~~dl~~al~~v~  272 (499)
T 2dhr_A          233 PGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAADRVM  272 (499)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTTT---------CCSSCCSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHHh
Confidence            7777 99999999884332211         123688899999888764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.91  E-value=1e-23  Score=199.69  Aligned_cols=260  Identities=17%  Similarity=0.239  Sum_probs=172.6

Q ss_pred             HHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCC-CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316          164 LENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK-VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  241 (445)
Q Consensus       164 ~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~  241 (445)
                      +...+++ ++|++.+++.+...+...   ..+...... .....+.+++|+||||||||++|+++++.++.       ++
T Consensus         9 l~~~l~~~i~G~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-------~~   78 (310)
T 1ofh_A            9 IVSELDQHIIGQADAKRAVAIALRNR---WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------PF   78 (310)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHHHHHH---HHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------CE
T ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHH---HhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CE
Confidence            4445554 999999999988765431   000000000 00235679999999999999999999999865       89


Q ss_pred             EEeecccccc-cccCCc-hhHHHHHHHHc--------cCcEEEEcCccccccCCCCCCchhHH-HHHHHHHhhccCC---
Q 013316          242 TEVQRTDLVG-EFVGHT-GPKTRRRIKEA--------EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDGG---  307 (445)
Q Consensus       242 ~~~~~~~l~~-~~~g~~-~~~~~~~~~~a--------~~~il~lDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~~---  307 (445)
                      +.++++.+.. .|+|.. ...+.+++..+        .++||||||+|.+.+.......+... .+++.|+..+++.   
T Consensus        79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~  158 (310)
T 1ofh_A           79 IKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS  158 (310)
T ss_dssp             EEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred             EEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence            9999998866 566653 34455555432        36899999999999876543333333 3578888888864   


Q ss_pred             ---------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHH----HHhcccccccccccccCCcc
Q 013316          308 ---------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSC  374 (445)
Q Consensus       308 ---------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~  374 (445)
                               .+++|++++... ......+|+|++||+..+.|++|+.+++.+|+++    ++.+........+  ....+
T Consensus       159 ~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~--~~~~~  235 (310)
T 1ofh_A          159 TKHGMVKTDHILFIASGAFQV-ARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG--VNIAF  235 (310)
T ss_dssp             ETTEEEECTTCEEEEEECCSS-SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTT--CEEEE
T ss_pred             cccccccCCcEEEEEcCCccc-CCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcC--Ceecc
Confidence                     567777753210 1112348999999998899999999999999983    3322211111111  12357


Q ss_pred             cHHHHHHHHHHHHHHh-hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          375 SMDAIAALIEKETTEK-QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       375 ~~~~l~~~~~~~~~~~-~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      +++++..+....|... ....+|+|.++++++++..........   ..+....|+.+|+.++++.
T Consensus       236 ~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~l~~  298 (310)
T 1ofh_A          236 TTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD---MNGQTVNIDAAYVADALGE  298 (310)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG---CTTCEEEECHHHHHHHTCS
T ss_pred             CHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcc---ccCCEEEEeeHHHHHHHHh
Confidence            8889998887777321 112589999999999986654433221   1223346999999998864

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.91  E-value=4.9e-23  Score=200.29  Aligned_cols=255  Identities=18%  Similarity=0.278  Sum_probs=178.0

Q ss_pred             HHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCC-CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316          164 LENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  241 (445)
Q Consensus       164 ~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~  241 (445)
                      +...|+ .++|++.+|+.|...   +..++++...+..+.. .++.++||+||||||||++|+++|+.++.       +|
T Consensus         9 i~~~Ld~~IvGqe~ak~~l~~a---v~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-------~~   78 (444)
T 1g41_A            9 IVSELDQHIIGQADAKRAVAIA---LRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------PF   78 (444)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHH---HHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------CE
T ss_pred             HHHHHHHHhCCHHHHHHHHHHH---HHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC-------Cc
Confidence            344555 489999999998764   3344556665544433 25679999999999999999999999876       89


Q ss_pred             EEeecccccc-cccCC-chhHHHHHH------------------------------------------------------
Q 013316          242 TEVQRTDLVG-EFVGH-TGPKTRRRI------------------------------------------------------  265 (445)
Q Consensus       242 ~~~~~~~l~~-~~~g~-~~~~~~~~~------------------------------------------------------  265 (445)
                      +.++++.+.+ .|+|+ .+..++.+|                                                      
T Consensus        79 ~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~  158 (444)
T 1g41_A           79 IKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQA  158 (444)
T ss_dssp             EEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC--------------------------------------
T ss_pred             eeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHH
Confidence            9999988877 48875 333332222                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 013316          266 --------------------------------------------------------------------------------  265 (445)
Q Consensus       266 --------------------------------------------------------------------------------  265 (445)
                                                                                                      
T Consensus       159 ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~  238 (444)
T 1g41_A          159 FRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPE  238 (444)
T ss_dssp             -------------------------------------------------------------------CCGGGSCSSCCHH
T ss_pred             HHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHH
Confidence                                                                                            


Q ss_pred             -------HHc-cCcEEEEcCccccccCCCCCCchhHHH-HHHHHHhhccC------------CcEEEEEecC---chhHH
Q 013316          266 -------KEA-EGGILFVDEAYRLIPMQKADDKDYGIE-ALEEIMSVMDG------------GKVVVIFAGY---SEPMK  321 (445)
Q Consensus       266 -------~~a-~~~il~lDEid~l~~~~~~~~~~~~~~-~~~~ll~~~~~------------~~~~~i~a~~---~~~~~  321 (445)
                             +.+ ..++||+||||+++.+..+...+.+.+ +|+.||+.+++            .++++|+++.   .++.+
T Consensus       239 ~~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d  318 (444)
T 1g41_A          239 ELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD  318 (444)
T ss_dssp             HHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG
T ss_pred             HHHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh
Confidence                   223 457999999999997654444566654 77889999885            3567888872   11222


Q ss_pred             HHHhhCcccccccccceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHH--Hhhhccc
Q 013316          322 RVIASNEGFCRRVTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT--EKQRREM  395 (445)
Q Consensus       322 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~  395 (445)
                          ..|+|++||+.++.|+.|+.+|+..|+.    ..++++...++..+..+  .++++++.+++...+.  .+.+ ..
T Consensus       319 ----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l--~~~~~al~~i~~~a~~~~~~t~-~~  391 (444)
T 1g41_A          319 ----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNI--AFTTDAVKKIAEAAFRVNEKTE-NI  391 (444)
T ss_dssp             ----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE--EECHHHHHHHHHHHHHHHHHSC-CC
T ss_pred             ----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceE--EECHHHHHHHHHHHHHhccCCc-cC
Confidence                3599999999999999999999999993    23333333333333333  6788899988876543  2223 35


Q ss_pred             CchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          396 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       396 n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      ++|.|+++++++++.....+...   ......||.+++.+.++
T Consensus       392 GaR~L~~~ie~~~~~~~~~~~~~---~~~~~~i~~~~v~~~l~  431 (444)
T 1g41_A          392 GARRLHTVMERLMDKISFSASDM---NGQTVNIDAAYVADALG  431 (444)
T ss_dssp             GGGHHHHHHHHHHHHHHHHGGGC---TTCEEEECHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHhhcccc---CCCeEEEeHHHHHHhcC
Confidence            69999999999988877655322   23456899999987765

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.91  E-value=4.3e-24  Score=183.57  Aligned_cols=138  Identities=30%  Similarity=0.433  Sum_probs=127.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 013316           15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK   94 (445)
Q Consensus        15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~   94 (445)
                      ++|+.||..|+.++|+.||. .|+++|.++. .|+||||+|+..++.+++++|++.    |++++.+|.+|.||||+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d~-~g~t~l~~a~~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE-NGADVNASDS-DGRTPLHHAAENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhc----ccchhhhccCCCCHHHHHHH
Confidence            57999999999999998885 6899999997 799999999999999999999995    89999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           95 NGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        95 ~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      .|+.+++++|+++|++++.+|.+|+||| |+|+..++.+++++|+++++++..++..+.++...+
T Consensus        80 ~g~~~~v~~Ll~~gadvn~~d~~G~TpL-h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A  143 (169)
T 4gpm_A           80 NGHKEVVKLLISKGADVNAKDSDGRTPL-HHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA  143 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCHHHHHHHHHCcCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            9999999999999999999999999999 888889999999999999999888777766665544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=4.1e-24  Score=177.01  Aligned_cols=133  Identities=20%  Similarity=0.249  Sum_probs=121.9

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN   82 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d   82 (445)
                      +++.+..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+. |+.+++++|+++    |++++.+|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~----g~~~~~~~   74 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNR-FGRRPIQVMMM-GSAQVAELLLLH----GAEPNCAD   74 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCTTTTTSTT-SCHHHHHHHHHH----TCCSSCCB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCC-CCCCHHHHHHc-CCHHHHHHHHHC----CCCCCCcC
Confidence            45566655 69999999999999999998886 5789999987 79999999999 999999999995    88999999


Q ss_pred             CC-CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           83 MY-GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        83 ~~-g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      .. |.||||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|++
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPV-DLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHH-HHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence            99 99999999999999999999999999999999999999 778888999999999988864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.90  E-value=2.8e-26  Score=212.84  Aligned_cols=231  Identities=19%  Similarity=0.313  Sum_probs=162.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++++++.+.+++..+..+......    +...+.+++|+||||||||++|+++|..+..       +|+.+++
T Consensus         9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~v~~   77 (268)
T 2r62_A            9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANL----GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-------PFFSMGG   77 (268)
T ss_dssp             CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHH----SCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-------CCCCCCS
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHChHHHHHC----CCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEech
Confidence            4677999999999999987765544433333    3355678999999999999999999999876       7888999


Q ss_pred             ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCC----chhHHHHHHHHHhhccC-----CcEEEEEe
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG-----GKVVVIFA  314 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~----~~~~~~~~~~ll~~~~~-----~~~~~i~a  314 (445)
                      +.+...+.|.+...++.+|+.+.   ++||||||+|.+.++++.++    .....+.++.|+..+++     ..+++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t  157 (268)
T 2r62_A           78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAA  157 (268)
T ss_dssp             CTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEEC
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEe
Confidence            99988888887766666776653   49999999999987653211    11112356677777764     34777777


Q ss_pred             cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316          315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  392 (445)
                      ++....     .++++++  ||+..+.|+.|+.+++.++++.+++...         +..+.+.+.+....         
T Consensus       158 tn~~~~-----ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~la~~~---------  214 (268)
T 2r62_A          158 TNRPEI-----LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---------LANDVNLQEVAKLT---------  214 (268)
T ss_dssp             BSCCTT-----SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---------CCSSCCTTTTTSSS---------
T ss_pred             cCCchh-----cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---------CCCccCHHHHHHHc---------
Confidence            765532     3788888  9999999999999999999999887642         22333333333221         


Q ss_pred             cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      ...+++++++++++|......         .+...|+.+|+.++++.+
T Consensus       215 ~g~~g~dl~~l~~~a~~~a~~---------~~~~~i~~~~~~~a~~~~  253 (268)
T 2r62_A          215 AGLAGADLANIINEAALLAGR---------NNQKEVRQQHLKEAVERG  253 (268)
T ss_dssp             CSSCHHHHHHHHHHHHHTTSS---------SCCCSCCHHHHHTSCTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHH---------hccCCcCHHHHHHHHHHH
Confidence            123468999999988432211         112368999998877654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.90  E-value=6.2e-24  Score=197.01  Aligned_cols=152  Identities=27%  Similarity=0.316  Sum_probs=137.3

Q ss_pred             CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      ++.|++++..+ .|+||||+||..|+.++++.|+. .+++++..+. .|.||+|+|+..++.+++++|++.    |+++|
T Consensus        73 l~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~----g~~~n  146 (269)
T 4b93_B           73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDS----NAKPN  146 (269)
T ss_dssp             --CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCSC
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCccCC-CCCCccccccccChHHHHHHHHHC----CCCCC
Confidence            35789998877 69999999999999999998875 6788999887 799999999999999999999995    88999


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      .+|..|.||||+|+..|+.+++++|+++|++++.++..|+||| |+|+..++.+++++|+++|+++..++..+.++...+
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~L-h~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL-HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHH-HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999 888889999999999999999888777666666544

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.90  E-value=7.7e-23  Score=193.89  Aligned_cols=220  Identities=19%  Similarity=0.289  Sum_probs=158.9

Q ss_pred             HHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316          164 LENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  242 (445)
Q Consensus       164 ~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~  242 (445)
                      +...+. .++|++.+++.+...+....       .+......+..+++|+||||||||++|+++|+.+...    ..+++
T Consensus        11 l~~~l~~~i~G~~~~~~~l~~~i~~~~-------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~----~~~~~   79 (311)
T 4fcw_A           11 LEEELHKRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMI   79 (311)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHHHHHHH-------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC----GGGEE
T ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHHHh-------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC----CcceE
Confidence            334444 48899999998888665431       1222222334579999999999999999999998652    23788


Q ss_pred             Eeecccccc-----cccC-------Cc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--
Q 013316          243 EVQRTDLVG-----EFVG-------HT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--  307 (445)
Q Consensus       243 ~~~~~~l~~-----~~~g-------~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--  307 (445)
                      .++++.+..     .++|       .. ...+...+..+.++||||||+|.+.+           ++++.|++.++++  
T Consensus        80 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~  148 (311)
T 4fcw_A           80 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRL  148 (311)
T ss_dssp             EEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEE
T ss_pred             EeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEE
Confidence            899887533     2333       22 24566777788889999999999876           7888898888753  


Q ss_pred             -----------cEEEEEecCch---------------hHHH------HHhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316          308 -----------KVVVIFAGYSE---------------PMKR------VIASNEGFCRRVTKFFHFNDFNSEELAKILHIK  355 (445)
Q Consensus       308 -----------~~~~i~a~~~~---------------~~~~------~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~  355 (445)
                                 +.++|++++..               ....      .-..+|+|.+||+..+.|++|+.+++.+|++++
T Consensus       149 ~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~  228 (311)
T 4fcw_A          149 TDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ  228 (311)
T ss_dssp             ECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred             EcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence                       45577777762               1111      113479999999999999999999999999999


Q ss_pred             HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316          356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  411 (445)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~  411 (445)
                      +.+....+...+  ....++++++..+..+.|    ..++|+|++++++++++...
T Consensus       229 l~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~----~~~gn~R~L~~~i~~~~~~~  278 (311)
T 4fcw_A          229 MSYLRARLAEKR--ISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETP  278 (311)
T ss_dssp             THHHHHHHHTTT--CEEEECHHHHHHHHHHSC----BTTTBTTTHHHHHHHHTHHH
T ss_pred             HHHHHHHHHhCC--cEEEeCHHHHHHHHHhCC----CccCCchhHHHHHHHHHHHH
Confidence            988655443222  234678889887776665    23799999999999986643

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.5e-23  Score=173.78  Aligned_cols=131  Identities=27%  Similarity=0.310  Sum_probs=114.5

Q ss_pred             ccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC
Q 013316            4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM   83 (445)
Q Consensus         4 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~   83 (445)
                      |+++.....|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|.
T Consensus         1 G~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~   74 (137)
T 3c5r_A            1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDH-AGWTPLHEACNHGHLKVVELLLQH----KALVNTTGY   74 (137)
T ss_dssp             ---CCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCG
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCcccCcCC
Confidence            6788777789999999999999999998885 5889999987 799999999999999999999995    889999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...+..+++.++...
T Consensus        75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV-DYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGG-GGCCCHHHHHHHSCC---
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHhhccHHHHHhhcccc
Confidence            999999999999999999999999999999999999999 777776666666655433

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.89  E-value=1.7e-24  Score=210.66  Aligned_cols=282  Identities=17%  Similarity=0.140  Sum_probs=193.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHH
Q 013316           87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELEN  166 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~  166 (445)
                      +|+.+.+.++..+.+...++.|++            +|+.++....++...+.........+....   ..   ..+...
T Consensus        73 ~pvIvlT~~~~~~~~~~a~~~Ga~------------dyl~KP~~~~~L~~~i~~~l~~~~l~~~~~---~l---~~~~~~  134 (387)
T 1ny5_A           73 TEVIVITGHGTIKTAVEAMKMGAY------------DFLTKPCMLEEIELTINKAIEHRKLRKENE---LL---RREKDL  134 (387)
T ss_dssp             SEEEEEEETTCHHHHHHHHTTTCC------------EEEEESCCHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHT
T ss_pred             CcEEEEeCCCCHHHHHHHHhcCce------------EEecCCCCHHHHHHHHHHHHHHHHHHHHHH---Hh---hhhhhh
Confidence            344444445666777777888988            788888777776666543322111111000   00   000011


Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+..++|.++.++++.+.+..+              +....+++++|++||||+++|+++|..+.+    ...+|+.++|
T Consensus       135 ~~~~~ig~s~~m~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r----~~~~fv~v~~  196 (387)
T 1ny5_A          135 KEEEYVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKLSDR----SKEPFVALNV  196 (387)
T ss_dssp             TCCCCCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHHSTT----TTSCEEEEET
T ss_pred             cchhhhhccHHhhHHHHHHHHh--------------cCCCCCeEEecCCCcCHHHHHHHHHHhcCC----CCCCeEEEec
Confidence            1345899998888888766654              345678999999999999999999998765    3449999999


Q ss_pred             ccc-----cccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316          247 TDL-----VGEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  307 (445)
Q Consensus       247 ~~l-----~~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  307 (445)
                      +.+     .+.+||+...       .....|+.|.+|+||||||+.+..           +.|..|++.++++       
T Consensus       197 ~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~  265 (387)
T 1ny5_A          197 ASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGG  265 (387)
T ss_dssp             TTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTC
T ss_pred             CCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCC
Confidence            985     3456675321       123578999999999999988876           8889999988753       


Q ss_pred             ------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316          308 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  376 (445)
Q Consensus       308 ------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~  376 (445)
                            ++.+|++|+.+....+.  ...+.|..|+. ..|.+|++.  .+|+..++++++++...+.+..    ...+++
T Consensus       266 ~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~----~~~~~~  341 (387)
T 1ny5_A          266 RKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE----VEGFTK  341 (387)
T ss_dssp             CSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC----CCEECH
T ss_pred             CceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCC----CCCCCH
Confidence                  45788888876654332  12355666774 557888887  5999999999998875544321    245788


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                      +++..+..+.|      |||.|+|+++++++....         +   ...|+.+|+...+
T Consensus       342 ~a~~~l~~~~w------pGNvreL~~~i~~~~~~~---------~---~~~i~~~~l~~~~  384 (387)
T 1ny5_A          342 SAQELLLSYPW------YGNVRELKNVIERAVLFS---------E---GKFIDRGELSCLV  384 (387)
T ss_dssp             HHHHHHHHSCC------TTHHHHHHHHHHHHHHHC---------C---SSEECHHHHHHHC
T ss_pred             HHHHHHHhCCC------CcHHHHHHHHHHHHHHhC---------C---CCcCcHHHCcHhh
Confidence            89998888877      999999999999984321         0   0257888876544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=5.8e-23  Score=177.10  Aligned_cols=132  Identities=21%  Similarity=0.238  Sum_probs=99.1

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|..|.||||+
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~  108 (172)
T 3v30_A           35 RGFTPLIWASAFGEIETVRFLLE-WGADPHILAK-ERESALSLASTGGYTDIVGLLLER----DVDINIYDWNGGTPLLY  108 (172)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhcc-cCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence            57788888888888877777764 4677777775 677888888888888888888774    67777777778888888


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhh
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA  150 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~  150 (445)
                      |+..|+.+++++|+++|++++.+|..|.||| ++|...++.+++++|++++++...++.
T Consensus       109 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~~~~~~~~~~  166 (172)
T 3v30_A          109 AVRGNHVKCVEALLARGADLTTEADSGYTPM-DLAVALGYRKVQQVIENHILKLFQSNL  166 (172)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHHHSCC--
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHhCcHHHHHHHHHHHHHHhcccC
Confidence            8888888888888888888887777888887 667777777888888777776555443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.89  E-value=3.1e-22  Score=192.02  Aligned_cols=206  Identities=20%  Similarity=0.271  Sum_probs=155.7

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.+..++.....           ...++.++||+||||||||++|+++++.++.       +|+.+++
T Consensus        27 ~~~~iiG~~~~~~~l~~~l~~~~~-----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-------~~~~~~~   88 (338)
T 3pfi_A           27 NFDGYIGQESIKKNLNVFIAAAKK-----------RNECLDHILFSGPAGLGKTTLANIISYEMSA-------NIKTTAA   88 (338)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHH-----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEEG
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEecc
Confidence            467899999999999987765421           1346678999999999999999999998765       8999998


Q ss_pred             ccccccccCCchhHHHHHHHH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----------------
Q 013316          247 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-----------------  308 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------  308 (445)
                      +.+.      ....+...+.. +.+++|||||||.+.+           ..++.|+..++++.                 
T Consensus        89 ~~~~------~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  151 (338)
T 3pfi_A           89 PMIE------KSGDLAAILTNLSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID  151 (338)
T ss_dssp             GGCC------SHHHHHHHHHTCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred             hhcc------chhHHHHHHHhccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecC
Confidence            7653      33445555654 5789999999998875           67788888887643                 


Q ss_pred             ---EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316          309 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  385 (445)
Q Consensus       309 ---~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (445)
                         +++|++|+....     .+|+|++||+..+.|++|+.+++..+++.++.+..           ..++++++..+.. 
T Consensus       152 ~~~~~~i~atn~~~~-----l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~l~~-  214 (338)
T 3pfi_A          152 LPKFTLIGATTRAGM-----LSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-----------KTCEEKAALEIAK-  214 (338)
T ss_dssp             CCCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHH-
T ss_pred             CCCeEEEEeCCCccc-----cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH-
Confidence               678888777544     38999999999999999999999999998887642           2456667765554 


Q ss_pred             HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      .|      +||.|++.++++++.......         +...|+.+++..++..
T Consensus       215 ~~------~G~~r~l~~~l~~~~~~a~~~---------~~~~i~~~~~~~~~~~  253 (338)
T 3pfi_A          215 RS------RSTPRIALRLLKRVRDFADVN---------DEEIITEKRANEALNS  253 (338)
T ss_dssp             TT------TTCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHHHH
T ss_pred             HH------CcCHHHHHHHHHHHHHHHHhh---------cCCccCHHHHHHHHHH
Confidence            66      889999999999884433211         1124667777666654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.89  E-value=1.7e-22  Score=185.78  Aligned_cols=227  Identities=24%  Similarity=0.336  Sum_probs=160.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|+++++.++.++......+......+    ...+.+++|+||||||||+++++++..+..       +++.+++
T Consensus        14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-------~~i~~~~   82 (254)
T 1ixz_A           14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG----ARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITASG   82 (254)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT----CCCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEEH
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcC----CCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEeeH
Confidence            56789999999999988766543333333333    345667999999999999999999998753       8899999


Q ss_pred             ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC---Cc-EEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG---GK-VVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~---~~-~~~i~a~~  316 (445)
                      .++...+.|.....+..+|+.+.   ++++|+||+|.+...++..   ......+.++.++..+++   .+ ++++++++
T Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~  162 (254)
T 1ixz_A           83 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN  162 (254)
T ss_dssp             HHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEES
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccC
Confidence            88887788877777888888764   4899999999998765421   233445667788887765   23 44445544


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ....     .||++++  ||+..+.|+.|+.+++.+|++.+++..         .+.++++.+    .++..|      +
T Consensus       163 ~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~----~la~~~------~  218 (254)
T 1ixz_A          163 RPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA----LLAKRT------P  218 (254)
T ss_dssp             CGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCTTCCHH----HHHHTC------T
T ss_pred             Cchh-----CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---------CCCcccCHH----HHHHHc------C
Confidence            4333     3899988  899999999999999999999877543         334444433    344444      4


Q ss_pred             cC-chhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          395 MN-GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       395 ~n-~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                      |+ ++++++++++|......+         +...|+.+|+++++
T Consensus       219 G~~~~dl~~~~~~a~~~a~~~---------~~~~I~~~dl~~a~  253 (254)
T 1ixz_A          219 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA  253 (254)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHh---------cCCCcCHHHHHHHh
Confidence            54 489999999885433221         12369999999875

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.89  E-value=3.2e-25  Score=213.95  Aligned_cols=313  Identities=15%  Similarity=0.190  Sum_probs=207.5

Q ss_pred             HHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc--ccccCCCCcHHHHHHHcCCHHHHHHHH
Q 013316           28 AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL--EAQNMYGETPLHMAAKNGCNEAAKLLL  105 (445)
Q Consensus        28 ~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v--~~~d~~g~tpLh~A~~~g~~~~~~~Ll  105 (445)
                      .++.+|...+..+....  +|..++...... .++++-+.+.+|+.+|.++  .++.....+|+.+.+.++..+.+...+
T Consensus        15 ~l~~~L~~~g~~v~~a~--~~~eal~~l~~~-~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~   91 (368)
T 3dzd_A           15 SLSAILEEEGYHPDTAK--TLREAEKKIKEL-FFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAI   91 (368)
T ss_dssp             HHHHHHHHTTCEEEEES--SHHHHHHHHHHB-CCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEC--CHHHHHHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHH
Confidence            45556666676665544  366666554332 3443333333333223222  111111223333333344556677777


Q ss_pred             hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHHHHHhhhcchHHHHHHHHHH
Q 013316          106 AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWA  185 (445)
Q Consensus       106 ~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~g~~~~~~~l~~~~  185 (445)
                      +.|++            +|+.++....++...+.............      ..        -..++|.++.+.++.+.+
T Consensus        92 ~~Ga~------------~yl~KP~~~~~L~~~i~~~l~~~~~~~~~------~~--------~~~~ig~s~~~~~~~~~~  145 (368)
T 3dzd_A           92 KKGAY------------EFLEKPFSVERFLLTIKHAFEEYSKKAPP------QE--------EIEFVGEHPKILEIKRLI  145 (368)
T ss_dssp             HHTCC------------EEEESSCCHHHHHHHHHHHHHHHSCCCCC------CC--------CCCCCCCSHHHHHHHHHH
T ss_pred             hcCcc------------eEEeCCCCHHHHHHHHHHHHHHhhhhhcc------cc--------cccccccchHHHHHHhhh
Confidence            88888            78888887777766664332211111000      00        024889998888888766


Q ss_pred             HHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc-----ccccCCchhH
Q 013316          186 KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GEFVGHTGPK  260 (445)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~-----~~~~g~~~~~  260 (445)
                      ..+              +....+++++|++||||+++|+++|..+.+.     ..|+.++|+.+.     +.+||+....
T Consensus       146 ~~~--------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~-----~~fv~vnc~~~~~~~~~~~lfg~~~g~  206 (368)
T 3dzd_A          146 PKI--------------AKSKAPVLITGESGTGKEIVARLIHRYSGRK-----GAFVDLNCASIPQELAESELFGHEKGA  206 (368)
T ss_dssp             HHH--------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCC-----SCEEEEESSSSCTTTHHHHHHEECSCS
T ss_pred             hhh--------------hccchhheEEeCCCchHHHHHHHHHHhcccc-----CCcEEEEcccCChHHHHHHhcCccccc
Confidence            544              2356689999999999999999999988652     249999999743     4456653221


Q ss_pred             -------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------------cEEEEEecCchhH
Q 013316          261 -------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPM  320 (445)
Q Consensus       261 -------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~~~~i~a~~~~~~  320 (445)
                             ....|+.|.+|+||||||+.+.+           ..|..|++.++++             ++.+|++|+.+..
T Consensus       207 ~tga~~~~~g~~~~a~~gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~  275 (368)
T 3dzd_A          207 FTGALTRKKGKLELADQGTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE  275 (368)
T ss_dssp             SSSCCCCEECHHHHTTTSEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH
T ss_pred             cCCcccccCChHhhcCCCeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH
Confidence                   23478899999999999988876           8889999999864             3568888887766


Q ss_pred             HHHHh--hCcccccccc-cceeCCCCCH--HHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          321 KRVIA--SNEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       321 ~~~~~--~~~~l~~R~~-~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ..+..  -.+.|..|+. ..|.+|++..  +|+..++++++.+.....+..    ...++++++..+..+.|      ||
T Consensus       276 ~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~----~~~~~~~a~~~L~~~~w------pG  345 (368)
T 3dzd_A          276 EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN----CFELSEETKEYLMKQEW------KG  345 (368)
T ss_dssp             HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC----CCCBCHHHHHHHHTCCC------TT
T ss_pred             HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC----CCCcCHHHHHHHHhCCC------Cc
Confidence            54432  2356777885 4588999986  899999999999876554422    35688899998888888      99


Q ss_pred             CchhhHHHHHHHHH
Q 013316          396 NGGLVDPMLVNARE  409 (445)
Q Consensus       396 n~r~l~~~~~~~~~  409 (445)
                      |.|+|+++++++..
T Consensus       346 NvreL~n~i~~~~~  359 (368)
T 3dzd_A          346 NVRELKNLIERAVI  359 (368)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999843

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.89  E-value=1.6e-23  Score=197.16  Aligned_cols=202  Identities=19%  Similarity=0.210  Sum_probs=153.7

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +++|.++.++.+.+.+..+              +..+.+|||+||||||||++|++||..+.+.    ..+|+.++|+.+
T Consensus         3 ~iig~s~~~~~~~~~~~~~--------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~----~~~~v~v~~~~~   64 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMV--------------APSDATVLIHGDSGTGKELVARALHACSARS----DRPLVTLNCAAL   64 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHH--------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCS----SSCCCEEECSSC
T ss_pred             CcEECCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCchHHHHHHHHHHhCccc----CCCeEEEeCCCC
Confidence            4899999999988877655              3467799999999999999999999987542    338999999875


Q ss_pred             c-----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc---------
Q 013316          250 V-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------  308 (445)
Q Consensus       250 ~-----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------  308 (445)
                      .     +.++|+...       .....|+.+.+++||||||+.+..           ..+..|+..++.+.         
T Consensus        65 ~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~  133 (304)
T 1ojl_A           65 NESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQT  133 (304)
T ss_dssp             CHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCC
T ss_pred             ChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCccc
Confidence            3     345665221       223467888899999999998876           67888888887643         


Q ss_pred             ----EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316          309 ----VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  379 (445)
Q Consensus       309 ----~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l  379 (445)
                          +.+|++|+.+....+.  ..++.|.+||. ..|.+|+++  .+|+..++++++.+.....+.    ....++++++
T Consensus       134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~----~~~~~s~~a~  209 (304)
T 1ojl_A          134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRK----VVKGFTPQAM  209 (304)
T ss_dssp             CBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTC----CCCCBCHHHH
T ss_pred             ccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhcc----CccCCCHHHH
Confidence                7888888876444332  23577888985 557899998  789999999999876543331    1346788898


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      ..+..+.|      |||.|+++++++++...
T Consensus       210 ~~L~~~~w------pGnvReL~~~l~~~~~~  234 (304)
T 1ojl_A          210 DLLIHYDW------PGNIRELENAIERAVVL  234 (304)
T ss_dssp             HHHHHCCC------SSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC------CCCHHHHHHHHHHHHHh
Confidence            88877766      99999999999998653

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.89  E-value=2.1e-22  Score=195.94  Aligned_cols=255  Identities=16%  Similarity=0.235  Sum_probs=160.2

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCC-----------------CCCCCCCCeeEeecCCCCchhHHHH
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGL-----------------KVGARRPPHMAFLGNPGTGKTMVAR  224 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~vll~Gp~GtGKt~~A~  224 (445)
                      ++...|++ ++|++.+++.|...+....   .+...+.                 .....++.+++|+||||||||++|+
T Consensus        14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~---~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~   90 (376)
T 1um8_A           14 ELKAVLDNYVIGQEQAKKVFSVAVYNHY---KRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ   90 (376)
T ss_dssp             HHHHHHHTTCCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred             HHHHHHhhHccCcHHHHHHHHHHHHHHH---HHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence            34555665 8999999999987552110   1111000                 0012356789999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCeEEeeccccc-ccccCCc-hhHHHHHHH-------HccCcEEEEcCccccccCCCCCC---chh
Q 013316          225 ILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADD---KDY  292 (445)
Q Consensus       225 ~la~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~-------~a~~~il~lDEid~l~~~~~~~~---~~~  292 (445)
                      ++|+.++.       +|+.++++.+. ..|+|+. ...+...+.       .+.++||||||||.+.+.+....   ...
T Consensus        91 ~la~~l~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~  163 (376)
T 1um8_A           91 TLAKHLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVS  163 (376)
T ss_dssp             HHHHHTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------
T ss_pred             HHHHHhCC-------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccc
Confidence            99998865       89999998875 4577764 344555543       44679999999999987643211   111


Q ss_pred             HHHHHHHHHhhccCC-----------------------cEEEEEecCchhHHHH--------------------------
Q 013316          293 GIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPMKRV--------------------------  323 (445)
Q Consensus       293 ~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~~~~~~--------------------------  323 (445)
                      ...+++.|+..|++.                       ++++|++++.......                          
T Consensus       164 ~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~  243 (376)
T 1um8_A          164 GEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAIL  243 (376)
T ss_dssp             CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSG
T ss_pred             hHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHH
Confidence            124788899988854                       2366666553222211                          


Q ss_pred             ----------HhhCcccccccccceeCCCCCHHHHHHHHHH----HHhcccccccccccccCCcccHHHHHHHHHHHHHH
Q 013316          324 ----------IASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE  389 (445)
Q Consensus       324 ----------~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  389 (445)
                                ....|+|++||+.++.|++++.+++..|+..    ++.+....+...+.  ...++++++..+..+.|. 
T Consensus       244 ~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~l~~~~~~-  320 (376)
T 1um8_A          244 HLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEV--DLIFEEEAIKEIAQLALE-  320 (376)
T ss_dssp             GGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC--EEEECHHHHHHHHHHHHH-
T ss_pred             hhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCc--eEEECHHHHHHHHHHhcc-
Confidence                      1236889999999999999999999999973    33332222211112  235778898888877662 


Q ss_pred             hhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316          390 KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG  436 (445)
Q Consensus       390 ~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a  436 (445)
                         ..+|+|.+++++++++.....+....   ......||.+++.+.
T Consensus       321 ---~~~~~R~L~~~le~~~~~~~~~~~~~---~~~~~~i~~~~v~~~  361 (376)
T 1um8_A          321 ---RKTGARGLRAIIEDFCLDIMFDLPKL---KGSEVRITKDCVLKQ  361 (376)
T ss_dssp             ---TTCTGGGHHHHHHHHHHHHHHTGGGG---TTSEEEECHHHHTTS
T ss_pred             ---cccCcHHHHHHHHHHHHHHHhhccCC---CCCEEEEeHHHhcCC
Confidence               25899999999999977655543221   223457899988754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.89  E-value=6.9e-23  Score=173.12  Aligned_cols=134  Identities=25%  Similarity=0.329  Sum_probs=71.2

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 013316           14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA   93 (445)
Q Consensus        14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~   93 (445)
                      .++||.|+..|+.++++.|+.. +.+++ .+. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDW-LGTSPLHLAAQYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCT-TCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHH
Confidence            3555555555555555555543 23333 222 355555555555555555555553    4555555555555555555


Q ss_pred             HcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316           94 KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS  155 (445)
Q Consensus        94 ~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~  155 (445)
                      ..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++++++...++..+.++
T Consensus        76 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  136 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADVNAKDMLKMTAL-HWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HcChHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            55555555555555555555555555555 44444555555555555555544443333333

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.89  E-value=1.1e-22  Score=174.93  Aligned_cols=143  Identities=29%  Similarity=0.335  Sum_probs=120.5

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      ...+.++||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.    |++++.+|..|.|||
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L   84 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLLKN----GADVNAVDHAGMTPL   84 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHH
Confidence            3457889999999999999988775 5788888886 799999999999999999999985    788888999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      |+|+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|++++++...++..+.++...+
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  153 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPL-HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS  153 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999999999999 777788889999999999888766665555554443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=7.3e-23  Score=169.44  Aligned_cols=125  Identities=32%  Similarity=0.398  Sum_probs=116.1

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..+.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLKN----GADVNAVDAIGFTPLH   85 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHH
Confidence            458899999999999999998886 5889999987 799999999999999999999995    8899999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      +|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl-~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF-DISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHH-HHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999 7888889999999998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=7.7e-23  Score=174.36  Aligned_cols=124  Identities=28%  Similarity=0.379  Sum_probs=68.8

Q ss_pred             CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316           13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA   92 (445)
Q Consensus        13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A   92 (445)
                      ..||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+. |+.+++++|++.    |++++.+|..|.||||+|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQ-NNVNVNAQNG-FGRTALQVMKL-GNPEIARRLLLR----GANPDLKDRTGFAVIHDA   77 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCT-TSCCHHHHCCS-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHh-CCCCccccCc-cCccHHHHHHc-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHHH
Confidence            3455555555555555555543 3455555554 45555555555 555555555553    455555555555555555


Q ss_pred             HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        93 ~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      +..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++++++
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHccCC
Confidence            555555555555555555555555555555 444555555555555555544

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=9.7e-23  Score=176.99  Aligned_cols=143  Identities=23%  Similarity=0.263  Sum_probs=126.7

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..+.++||.||..|+.+.++.|+...+.+++..+. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   77 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMR----GARINVMNRGDDTPLH   77 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC-CCCCHHHHHHHcCcHHHHHHHHHc----CCCCCCcCCCCCCHHH
Confidence            45788999999999999999999888888999887 799999999999999999999995    8899999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      +|+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|++++++...++..+.++...+
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  145 (179)
T 3f6q_A           78 LAASHGHRDIVQKLLQYKADINAVNEHGNVPL-HYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA  145 (179)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence            99999999999999999999999999999999 778888899999999999998877776666665544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.88  E-value=3.6e-22  Score=170.83  Aligned_cols=138  Identities=28%  Similarity=0.411  Sum_probs=77.0

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .+.+|||.|+..|+.+.++.|+...+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|..|.||||+
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc-CCCCHHHHHHHcChHHHHHHHHhc----CCCCCccCCCCCCHHHH
Confidence            3455556666555555555555544445555444 455566665555555555555553    45555555555566666


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS  155 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~  155 (445)
                      |+..|+.+++++|+++|++++.+|.+|+||| |+|+..++.+++++|+++++++..++..+.++
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  144 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLLQHGADPTKKNRDGNTP  144 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCh
Confidence            5555555555555555555555555555665 44555555555555555555554444333333

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.88  E-value=8.3e-23  Score=201.53  Aligned_cols=209  Identities=20%  Similarity=0.254  Sum_probs=150.5

Q ss_pred             HHHhhhcchHHH---HHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          167 ELSNIVGLHELK---IQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      .|++++|++.++   ..+...+..                ....+++|+||||||||++|++||+.+..       +|+.
T Consensus        24 ~l~~ivGq~~~~~~~~~L~~~i~~----------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~-------~f~~   80 (447)
T 3pvs_A           24 NLAQYIGQQHLLAAGKPLPRAIEA----------------GHLHSMILWGPPGTGKTTLAEVIARYANA-------DVER   80 (447)
T ss_dssp             STTTCCSCHHHHSTTSHHHHHHHH----------------TCCCEEEEECSTTSSHHHHHHHHHHHTTC-------EEEE
T ss_pred             CHHHhCCcHHHHhchHHHHHHHHc----------------CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------CeEE
Confidence            467799999988   556554432                23468999999999999999999999865       7888


Q ss_pred             eecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  316 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~  316 (445)
                      +++...       ....++.++..+       .++||||||||.+..           ..++.|+..++++.+++|++|+
T Consensus        81 l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~~~v~lI~att  142 (447)
T 3pvs_A           81 ISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIEDGTITFIGATT  142 (447)
T ss_dssp             EETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHTTSCEEEEEES
T ss_pred             EEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhcCceEEEecCC
Confidence            876543       234455555443       579999999999976           4567789999999999999988


Q ss_pred             chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316          317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  396 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n  396 (445)
                      .++...   .+++|++|| .++.|++|+.+++.+++++++.+....++..    ...++++++..+.. +|      +||
T Consensus       143 ~n~~~~---l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~----~~~i~~~al~~L~~-~~------~Gd  207 (447)
T 3pvs_A          143 ENPSFE---LNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQ----DIVLPDETRRAIAE-LV------NGD  207 (447)
T ss_dssp             SCGGGS---SCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTS----SEECCHHHHHHHHH-HH------CSC
T ss_pred             CCcccc---cCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccc----cCcCCHHHHHHHHH-HC------CCC
Confidence            766543   389999999 5888999999999999999998754333322    23466777775554 46      789


Q ss_pred             chhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          397 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       397 ~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      .|.+.++++++......       ...+...||.+++.++++
T Consensus       208 ~R~lln~Le~a~~~a~~-------~~~~~~~It~e~v~~~l~  242 (447)
T 3pvs_A          208 ARRALNTLEMMADMAEV-------DDSGKRVLKPELLTEIAG  242 (447)
T ss_dssp             HHHHHHHHHHHHHHSCB-------CTTSCEECCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccc-------ccCCCCccCHHHHHHHHh
Confidence            99999999998543211       111224688888877765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=3.3e-23  Score=175.81  Aligned_cols=138  Identities=20%  Similarity=0.236  Sum_probs=116.7

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCc-H
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-P   88 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~t-p   88 (445)
                      ...|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+ .|+.+++++|+++    |++++.+|..|.| |
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~----g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLE-AGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLH----GAEPNCADPATLTRP   81 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTT----TCCCCCCCTTTCCCH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHH-cCCHHHHHHHHHc----CCCCCCcCCCCCcHH
Confidence            3468999999999999999998886 5889999987 7999999985 8999999999995    8899999999999 9


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316           89 LHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS  155 (445)
Q Consensus        89 Lh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~  155 (445)
                      ||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|+++..++..+.++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV-DLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHSSCC-------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            9999999999999999999999999999999999 78888899999999999999988776555443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.88  E-value=1.6e-22  Score=173.47  Aligned_cols=140  Identities=21%  Similarity=0.251  Sum_probs=126.0

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.||||+||..|+.++++.|+.. +.+++..+. .|+||||+|+..|+.+++++|++.    |++++.++..|.||||+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   75 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQN----GADPQLLGKGRESALSL   75 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCC-CCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCcCCCCCcHHHH
Confidence            478999999999999999999876 678898887 799999999999999999999995    88999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                      |+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|+++++++..++..+.++...
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  141 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL  141 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCcCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            9999999999999999999999999999999 77888899999999999998877766555555443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=1.3e-22  Score=184.76  Aligned_cols=142  Identities=22%  Similarity=0.203  Sum_probs=118.8

Q ss_pred             CCCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         1 l~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      ++.|++++....|.||||+||..|+.++++.|+. .+.++|..+. .|+||||+|+..|+.+++++|+++    |++++.
T Consensus        25 l~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~   98 (239)
T 1ycs_B           25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQF----GVNVNA   98 (239)
T ss_dssp             ------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCT-TSCCHHHHHHHHTCHHHHHHHHHH----TCCTTC
T ss_pred             hccCCCcccCchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCc
Confidence            4678888888889999999999999999998875 5779999987 799999999999999999999995    889999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC-Chhhhhh--cCCCChHHHHHHHhhhhhHHhhh
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGK-TPLDHLS--NGPGSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a--~~~~~~~i~~~ll~~~~~~~~~~  149 (445)
                      +|..|.||||+|+..|+.+++++|+++|++++.++..|. ||+ ++|  ...++.+++++|+.++++....+
T Consensus        99 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l-~~a~~~~~g~~~~~~~Ll~~~a~~~~~~  169 (239)
T 1ycs_B           99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA-DKCEEMEEGYTQCSQFLYGVQEKMGIMN  169 (239)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHH-HHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchH-HHHHHhhhccHHHHHHHHHhhhcccccc
Confidence            999999999999999999999999999999999998887 999 666  67788999999999998866543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.88  E-value=1.2e-22  Score=173.86  Aligned_cols=131  Identities=27%  Similarity=0.402  Sum_probs=116.8

Q ss_pred             cCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC
Q 013316            5 QDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM   83 (445)
Q Consensus         5 ~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~   83 (445)
                      .+.+..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|.
T Consensus        33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~  106 (165)
T 3twr_A           33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKH----GAVVNVADL  106 (165)
T ss_dssp             TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCT
T ss_pred             CCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCC-CCCCHHHHHHHcCcHHHHHHHHhC----CCCCCCcCC
Confidence            3444433 58899999999999999998885 5889999987 799999999999999999999995    889999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhh
Q 013316           84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSE  143 (445)
Q Consensus        84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~  143 (445)
                      +|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|.. ++.+++++|++.++
T Consensus       107 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          107 WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTG-GGSCT-TCHHHHHHHHTC--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChh-HhHhc-CChHHHHHHhhccc
Confidence            999999999999999999999999999999999999999 66666 78899999987764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.88  E-value=2.1e-22  Score=172.74  Aligned_cols=136  Identities=19%  Similarity=0.227  Sum_probs=124.0

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .|++.+..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|+++    |++++.+
T Consensus        25 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~   98 (167)
T 3v31_A           25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGK-GRESALSLACSKGYTDIVKMLLDC----GVDVNEY   98 (167)
T ss_dssp             HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCC
T ss_pred             cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHHC----CCCCCcC
Confidence            456666655 69999999999999999998886 4889999887 799999999999999999999995    8899999


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  145 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~  145 (445)
                      |..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|++++.+.
T Consensus        99 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           99 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM-DLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 7888889999999999887653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=4.1e-22  Score=162.02  Aligned_cols=126  Identities=37%  Similarity=0.531  Sum_probs=117.6

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.||||+|+..|+.++++.|+.. +.+++..+. .|.||||+|+..++.+++++|++.    |++++.+|..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCC-CCCcHHHHHHHcCcHHHHHHHHHc----CCCCcccCCCCCcHHHH
Confidence            478999999999999999988865 788888886 799999999999999999999995    88999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      |+..++.+++++|+++|++++.+|..|.||+ ++|...++.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHcChHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999 788888999999999988864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=181.40  Aligned_cols=144  Identities=22%  Similarity=0.185  Sum_probs=125.3

Q ss_pred             CCCccCccCCC----CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCc
Q 013316            1 MQKNQDRRSRS----AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV   76 (445)
Q Consensus         1 l~~~~~~~~~~----~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~   76 (445)
                      +++|++++...    .+.||||+||..|+.++++.|+. .+.++|..+. .|+||||+|+..|+.+++++|++.    |+
T Consensus         5 l~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~----ga   78 (229)
T 2vge_A            5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNE-EGITALHNAICGANYSIVDFLITA----GA   78 (229)
T ss_dssp             -----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TC
T ss_pred             hccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CC
Confidence            35667665432    57889999999999999999886 4789999987 799999999999999999999995    89


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhhh--cCCCChHHHHHHHhhhhhHHhhhhh
Q 013316           77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLS--NGPGSAKLRELLLWHSEEQRKRRAL  151 (445)
Q Consensus        77 ~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a--~~~~~~~i~~~ll~~~~~~~~~~~~  151 (445)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||| ++|  ...++.+++++|++++++....+..
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL-~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~  155 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF-EKCDPYREGYADCATYLADVEQSMGLMNSG  155 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTG-GGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHH-HHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence            999999999999999999999999999999999999986 6999999 777  8899999999999999987776543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.88  E-value=2.7e-22  Score=174.16  Aligned_cols=137  Identities=26%  Similarity=0.357  Sum_probs=125.1

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN   82 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d   82 (445)
                      +.+.+..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d  102 (179)
T 3f6q_A           29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQY----KADINAVN  102 (179)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCC
T ss_pred             cccccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccC
Confidence            45556555 69999999999999999998885 5899999987 799999999999999999999995    88999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHh
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  147 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~  147 (445)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|++++++...
T Consensus       103 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV-DKAKAPLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGG-GGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcH-HHHHHHHHHHHHHHHHHhhcCccc
Confidence            9999999999999999999999999999999999999999 778888899999999999987654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.88  E-value=8.9e-23  Score=187.49  Aligned_cols=138  Identities=25%  Similarity=0.333  Sum_probs=71.2

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC------------------
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------------------   73 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~------------------   73 (445)
                      .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.+..                  
T Consensus        56 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           56 TGETALHLAARYSRSDAAKRLLE-ASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            45555555555555555554443 3455555554 455555555555555555555553100                  


Q ss_pred             ------------CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           74 ------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        74 ------------~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                                  .|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|+..++.+++++|+++
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~  212 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAKVLLDH  212 (253)
T ss_dssp             HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHT
T ss_pred             cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHCCCHHHHHHHHHc
Confidence                        1444555555555555555555555555555555555555555555555 444444555555555555


Q ss_pred             hhhHHhhhhhh
Q 013316          142 SEEQRKRRALE  152 (445)
Q Consensus       142 ~~~~~~~~~~~  152 (445)
                      +++...++..+
T Consensus       213 ga~~~~~d~~g  223 (253)
T 1yyh_A          213 FANRDITDHMD  223 (253)
T ss_dssp             TCCTTCCCTTC
T ss_pred             CCCccccccCC
Confidence            55544443333

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.88  E-value=3e-22  Score=185.30  Aligned_cols=206  Identities=16%  Similarity=0.179  Sum_probs=146.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|+++.+..+.+.+...              ...+.+++|+||||||||++|+++|+.+...    ..+|+.++|
T Consensus         4 ~f~~~ig~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~----~~~~~~v~~   65 (265)
T 2bjv_A            4 YKDNLLGEANSFLEVLEQVSHL--------------APLDKPVLIIGERGTGKELIASRLHYLSSRW----QGPFISLNC   65 (265)
T ss_dssp             ------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTT----TSCEEEEEG
T ss_pred             ccccceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCcc----CCCeEEEec
Confidence            5778999999998888766544              2346789999999999999999999877542    238999999


Q ss_pred             cccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316          247 TDLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  307 (445)
Q Consensus       247 ~~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  307 (445)
                      +.+.     ..++|.....       ....|..+.+++|||||||.+.+           +.+..|+..++.+       
T Consensus        66 ~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~  134 (265)
T 2bjv_A           66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGG  134 (265)
T ss_dssp             GGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC
T ss_pred             CCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCC
Confidence            8763     2345542211       12356677889999999999876           6677888887743       


Q ss_pred             ------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCCH--HHHHHHHHHHHhcccccccccccccCCcccH
Q 013316          308 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM  376 (445)
Q Consensus       308 ------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~  376 (445)
                            .+.+|++++......+.  ..++.|.+||. ..+.+|+++.  +++..++++++.+.....+   ......+++
T Consensus       135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~---~~~~~~~~~  211 (265)
T 2bjv_A          135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIK---LPLFPGFTE  211 (265)
T ss_dssp             --CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTT---CSSCCCBCH
T ss_pred             cccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhC---CCcccCcCH
Confidence                  46788888775444322  23688999995 5689999985  8999999998877543322   111136788


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          377 DAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      +++..+..+.|      ++|.|+++++++++...
T Consensus       212 ~a~~~L~~~~~------~gn~reL~~~l~~~~~~  239 (265)
T 2bjv_A          212 RARETLLNYRW------PGNIRELKNVVERSVYR  239 (265)
T ss_dssp             HHHHHHHHSCC------TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC------CCCHHHHHHHHHHHHHh
Confidence            89887776666      89999999999998543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.88  E-value=2.7e-22  Score=176.19  Aligned_cols=142  Identities=23%  Similarity=0.289  Sum_probs=124.2

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..|.||||+||..|+.++++.|+.. +.+++..+. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||
T Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           33 SYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDI-EGSTALIWAVKNNRLGIAEKLLSK----GSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             TTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccc-cCccHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHH
Confidence            3689999999999999999988865 678888886 799999999999999999999985    7889999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      +|+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|+++++++..++..+.++...+
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  174 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPL-IVASKYGRSEIVKKLLELGADISARDLTGLTAEASA  174 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999999999999999 778888899999999999988777665555555444

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.87  E-value=1.2e-21  Score=182.63  Aligned_cols=227  Identities=23%  Similarity=0.309  Sum_probs=160.7

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|.++++.++.++......+........    ..+.+++|+||||||||+++++|+..+..       +++.+++
T Consensus        38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~----~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------~~i~~~~  106 (278)
T 1iy2_A           38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITASG  106 (278)
T ss_dssp             CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC----CCCCEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEEH
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCC----CCCCeEEEECCCcChHHHHHHHHHHHcCC-------CEEEecH
Confidence            467899999999999887665443333333333    34567999999999999999999998753       8899999


Q ss_pred             ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccCC---c-EEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG---K-VVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~---~-~~~i~a~~  316 (445)
                      .++...+.+.....+..+|+.+.   ++++|+||+|.+...+...   ......+.++.++..++++   + ++++++++
T Consensus       107 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~  186 (278)
T 1iy2_A          107 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN  186 (278)
T ss_dssp             HHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC
Confidence            88877777777777778888764   4899999999997655421   1233346667777777652   3 45555554


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ....     .||++++  ||+..+.|+.|+.+++.+|++.+++..         .+.++++..    .++..|      +
T Consensus       187 ~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~----~la~~~------~  242 (278)
T 1iy2_A          187 RPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA----LLAKRT------P  242 (278)
T ss_dssp             CTTS-----SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHH----HHHHTC------T
T ss_pred             Cchh-----CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---------CCCcccCHH----HHHHHc------C
Confidence            4332     3888887  899999999999999999999887643         333444333    344555      5


Q ss_pred             cCc-hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          395 MNG-GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       395 ~n~-r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                      ||. +++++++++|......+         +...|+.+|+++++
T Consensus       243 G~~~~dl~~l~~~a~~~a~~~---------~~~~I~~~dl~~a~  277 (278)
T 1iy2_A          243 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA  277 (278)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT---------TCCSBCHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHh
Confidence            655 89999999885433221         12369999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.87  E-value=1.9e-22  Score=173.88  Aligned_cols=141  Identities=25%  Similarity=0.306  Sum_probs=126.3

Q ss_pred             CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316           13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA   92 (445)
Q Consensus        13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A   92 (445)
                      +.+|||+||..|+.+.++.++...+..++..+. .|+||||+|+..|+.+++++|+++    |++++.+|..|.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   76 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEW----GADPHILAKERESALSLA   76 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHH
Confidence            468999999999999999999877666888886 799999999999999999999995    889999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        93 ~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      +..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++++++...++..+.++...+
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  142 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDINIYDWNGGTPL-LYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA  142 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHCCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            999999999999999999999999999999 788888999999999999988877766555554433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.87  E-value=3.2e-22  Score=179.79  Aligned_cols=149  Identities=21%  Similarity=0.250  Sum_probs=98.7

Q ss_pred             CCccCccCC--CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            2 QKNQDRRSR--SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         2 ~~~~~~~~~--~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      +.|++.+..  ..|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.+   ..+++
T Consensus        12 ~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~   86 (223)
T 2f8y_A           12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNR---ATDLD   86 (223)
T ss_dssp             ETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHBT---TSCTT
T ss_pred             HcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC---CCCcc
Confidence            345555443  357777777777777777776664 4667777765 5777777777777777777777641   22566


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhh
Q 013316           80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSE  156 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~  156 (445)
                      .++..|.||||+|+..++.+++++|+++|++++.++..|.||| |+|+..++.+++++|++++++...++..+.++.
T Consensus        87 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  162 (223)
T 2f8y_A           87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL-HWAAAVNNVDAAVVLLKNGANKDMQNNREETPL  162 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHH
Confidence            6666777777777777777777777777777777777777777 556666667777777776666555444333333

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.87  E-value=9.8e-22  Score=178.43  Aligned_cols=139  Identities=24%  Similarity=0.270  Sum_probs=88.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCC-----CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCC
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENP-----SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK   75 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g   75 (445)
                      ++|++++..+ .|.||||+||..|+.++++.|+....     ..++..+. .|+||||+|+..|+.+++++|+++    |
T Consensus        66 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g  140 (236)
T 1ikn_D           66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY-NGHTCLHLASIHGYLGIVELLVSL----G  140 (236)
T ss_dssp             SCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT-TCCCHHHHHHHTTCHHHHHHHHHH----T
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHc----C
Confidence            4566666554 46666666666666666666654321     11344443 566677777666666677766663    6


Q ss_pred             cccccccC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316           76 VELEAQNM-YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  146 (445)
Q Consensus        76 ~~v~~~d~-~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~  146 (445)
                      ++++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|++..
T Consensus       141 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGG-GGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHH-HHHHccCchHHHHHHHHcchhhh
Confidence            66666665 667777777777777777777777777777777777776 56666666777777776666543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.87  E-value=1.9e-22  Score=177.15  Aligned_cols=133  Identities=25%  Similarity=0.254  Sum_probs=122.3

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .|++++..+ .|.||||+|+..|+.++++.|+.. +.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+
T Consensus        57 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~  130 (192)
T 2rfm_A           57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDF-SGKTPLMWSIIFGYSEMSYFLLEH----GANVNDR  130 (192)
T ss_dssp             HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCSSCC
T ss_pred             hccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHC----CCCCCCC
Confidence            456666655 699999999999999999988865 788999987 799999999999999999999995    8899999


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      |..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|++++
T Consensus       131 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE-ASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999 7888899999999998765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.87  E-value=5e-22  Score=170.77  Aligned_cols=134  Identities=31%  Similarity=0.411  Sum_probs=123.0

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.
T Consensus        35 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~  108 (169)
T 2y1l_E           35 ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDH-AGMTPLRLAALFGHLEIVEVLLKN----GADVNA  108 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTC
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCC
Confidence            4677877765 69999999999999999998885 5889999987 799999999999999999999995    889999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|++.|
T Consensus       109 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF-DISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999 7888889999999998764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=6.1e-22  Score=160.78  Aligned_cols=110  Identities=25%  Similarity=0.274  Sum_probs=101.5

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|..|.||||
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLK----GADINAPDKHHITPLL   78 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCT-TSSCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCC-CCCcHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHH
Confidence            468899999999999999998886 5788999987 799999999999999999999995    8899999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN  127 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~  127 (445)
                      +|+..++.+++++|+++|++++.+|..|.||+ ++|.
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~  114 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF-EATD  114 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHhC
Confidence            99999999999999999999999999999999 6663

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.87  E-value=6.1e-22  Score=209.44  Aligned_cols=214  Identities=16%  Similarity=0.269  Sum_probs=156.1

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      .++|++.+++.+.+.+....       .+......+..++||+||||||||++|+++|+.+...    ..+|+.++++.+
T Consensus       492 ~viGq~~a~~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~----~~~~i~i~~s~~  560 (758)
T 3pxi_A          492 RVIGQDEAVVAVAKAVRRAR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD----EESMIRIDMSEY  560 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC----TTCEEEEEGGGG
T ss_pred             cCcChHHHHHHHHHHHHHHH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----CcceEEEechhc
Confidence            48999999988887665332       2222222233379999999999999999999998653    338999999998


Q ss_pred             cccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-------------EEEEEecC
Q 013316          250 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGY  316 (445)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------~~~i~a~~  316 (445)
                      ...+... ...+...+....++||||||||.+.+           ++++.|++.|+++.             +++|++++
T Consensus       561 ~~~~~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn  628 (758)
T 3pxi_A          561 MEKHSTS-GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN  628 (758)
T ss_dssp             CSSCCCC----CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred             ccccccc-cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence            8776654 44455677778899999999998876           88899999998643             47777776


Q ss_pred             ch-----hHHHH--HhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH
Q 013316          317 SE-----PMKRV--IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE  389 (445)
Q Consensus       317 ~~-----~~~~~--~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  389 (445)
                      ..     .....  -...|+|++||+.+|.|++|+.+++.+|++.++.+...++...+.  ...++++++..+....+  
T Consensus       629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~--~~~~~~~a~~~l~~~~~--  704 (758)
T 3pxi_A          629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDL--SIELTDAAKAKVAEEGV--  704 (758)
T ss_dssp             SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTC--EEEECHHHHHHHHGGGC--
T ss_pred             CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC--eEEECHHHHHHHHHhCC--
Confidence            31     11111  123799999999999999999999999999999887655543333  33678888887765322  


Q ss_pred             hhhcccCchhhHHHHHHHHHhhh
Q 013316          390 KQRREMNGGLVDPMLVNARENLD  412 (445)
Q Consensus       390 ~~~~~~n~r~l~~~~~~~~~~~~  412 (445)
                        .+++|+|.|++++++++....
T Consensus       705 --~~~~~~R~L~~~i~~~v~~~l  725 (758)
T 3pxi_A          705 --DLEYGARPLRRAIQKHVEDRL  725 (758)
T ss_dssp             --CTTTTTTTHHHHHHHHTHHHH
T ss_pred             --CCCCCChHHHHHHHHHHHHHH
Confidence              348999999999998866443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.87  E-value=6.1e-22  Score=174.98  Aligned_cols=152  Identities=20%  Similarity=0.256  Sum_probs=131.6

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN   82 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d   82 (445)
                      +.+++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.   .+.+++.+|
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~  103 (201)
T 3hra_A           29 TYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNS-ISDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHN  103 (201)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhc---cCccccccc
Confidence            34666655 69999999999999999998885 5889999987 799999999999999999999954   467899999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcC-CCCcccccCCCChhhhhhcCCCC-----hHHHHHHHhhhhhHHhhhhhhhhhh
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANEGKTPLDHLSNGPGS-----AKLRELLLWHSEEQRKRRALEACSE  156 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~~-----~~i~~~ll~~~~~~~~~~~~~~~~~  156 (445)
                      ..|.||||+|+..|+.+++++|++.| ++++.+|..|+||| |+|+..+.     .+++++|+++++++..++..+.++.
T Consensus       104 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  182 (201)
T 3hra_A          104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL-IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM  182 (201)
T ss_dssp             TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHH-HHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHH-HHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHH
Confidence            99999999999999999999999999 99999999999999 66666665     8999999999999887776666666


Q ss_pred             hHHhH
Q 013316          157 TKAKM  161 (445)
Q Consensus       157 ~~a~~  161 (445)
                      ..+..
T Consensus       183 ~~A~~  187 (201)
T 3hra_A          183 DYANQ  187 (201)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.87  E-value=8.7e-22  Score=177.99  Aligned_cols=148  Identities=26%  Similarity=0.268  Sum_probs=103.5

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..++.+++++|++.    |++++.+
T Consensus        62 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~  135 (231)
T 3aji_A           62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEG----GANPDAK  135 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCC
T ss_pred             hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCc
Confidence            455555544 47777777777777777766654 4666666665 577777777777777777777774    6677777


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|+++..++..+.++..
T Consensus       136 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  210 (231)
T 3aji_A          136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL-HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ  210 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHH-HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            77777777777777777777777777777777777777777 6666667777777777777766655544444443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.87  E-value=3e-22  Score=186.51  Aligned_cols=135  Identities=27%  Similarity=0.307  Sum_probs=68.9

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC------------------
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------------------   73 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~------------------   73 (445)
                      .|.||||+||..|+.++++.|+. .|++++..+. .|+||||+|+..|+.+++++|++.+..                  
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  121 (282)
T 1oy3_D           44 LGQTALHLAAILGEASTVEKLYA-AGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP  121 (282)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCT-TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence            46666666666666666665553 3555555554 455666665555555555555553210                  


Q ss_pred             -------------------------CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccC-CCChhhhhhc
Q 013316           74 -------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANE-GKTPLDHLSN  127 (445)
Q Consensus        74 -------------------------~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~-g~tpl~~~a~  127 (445)
                                               .+.+++.++..|.||||+|+..|+.+++++|+++|++++.++.. |+||| |+|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL-~~A~  200 (282)
T 1oy3_D          122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL-HLAV  200 (282)
T ss_dssp             ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHH
T ss_pred             chhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH-HHHH
Confidence                                     01224444555555555555555555555555555555544432 55555 4444


Q ss_pred             CCCChHHHHHHHhhhhhHHhhh
Q 013316          128 GPGSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus       128 ~~~~~~i~~~ll~~~~~~~~~~  149 (445)
                      ..++.+++++|+++++++..++
T Consensus       201 ~~~~~~~v~~Ll~~gad~~~~d  222 (282)
T 1oy3_D          201 EAQAASVLELLLKAGADPTARM  222 (282)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HcCCHHHHHHHHHcCCCCcccc
Confidence            4444555555555544444433

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.87  E-value=6.1e-22  Score=200.60  Aligned_cols=230  Identities=17%  Similarity=0.228  Sum_probs=153.9

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ++++|+++++..+.+.....       ......   +..+++|+||||||||++|++||..+..       ++..++++.
T Consensus        81 ~di~G~~~vk~~i~~~~~l~-------~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~l~~-------~~~~i~~~~  143 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQ-------KLTKSL---KGPILCLAGPPGVGKTSLAKSIAKSLGR-------KFVRISLGG  143 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHH-------HHSSSC---CSCEEEEESSSSSSHHHHHHHHHHHHTC-------EEEEECCCC
T ss_pred             HHhccHHHHHHHHHHHHHHH-------HhcccC---CCCEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEecc
Confidence            45999999998887643211       111211   4668999999999999999999999865       788888776


Q ss_pred             ccc---------cccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----------
Q 013316          249 LVG---------EFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----------  306 (445)
Q Consensus       249 l~~---------~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----------  306 (445)
                      +..         .|+|.....+...|..+  .++||||||||.+.+.++.       +.++.|++.|+.           
T Consensus       144 ~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~  216 (543)
T 3m6a_A          144 VRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYI  216 (543)
T ss_dssp             --------------------CHHHHHHTTCSSSEEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSS
T ss_pred             cchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccC
Confidence            432         46676777777788777  5689999999999875432       356778887763           


Q ss_pred             ------CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccccccccccc-ccCCcccHHHH
Q 013316          307 ------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAI  379 (445)
Q Consensus       307 ------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l  379 (445)
                            .++++|++++...     ..+|+|++|| ..|.|+.|+.+++.+|+..++.+....  ..+. .....++++++
T Consensus       217 ~~~~~~~~v~iI~ttN~~~-----~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~--~~~~~~~~i~i~~~~l  288 (543)
T 3m6a_A          217 EETFDLSKVLFIATANNLA-----TIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIK--EHGLKKSNLQLRDQAI  288 (543)
T ss_dssp             CCCCBCSSCEEEEECSSTT-----TSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHH--HTTCCGGGCEECHHHH
T ss_pred             CeeecccceEEEeccCccc-----cCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHH--HcCCCcccccCCHHHH
Confidence                  3467777766543     2389999999 579999999999999999877432111  0111 11235677888


Q ss_pred             HHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          380 AALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      ..++..+.     +++|+|+|++.++++++....+...   .......|+.+|+.+++.
T Consensus       289 ~~l~~~~~-----~~~~vR~L~~~i~~~~~~aa~~~~~---~~~~~~~It~~~l~~~Lg  339 (543)
T 3m6a_A          289 LDIIRYYT-----REAGVRSLERQLAAICRKAAKAIVA---EERKRITVTEKNLQDFIG  339 (543)
T ss_dssp             HHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHT---TCCSCCEECTTTTHHHHC
T ss_pred             HHHHHhCC-----hhhchhHHHHHHHHHHHHHHHHHHh---cCCcceecCHHHHHHHhC
Confidence            87776443     3799999999999998877665533   223445789999888774

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.86  E-value=1.4e-21  Score=176.87  Aligned_cols=135  Identities=28%  Similarity=0.341  Sum_probs=113.6

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCc-----CCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLL-----NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE   77 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~   77 (445)
                      |++++..+ .|.||||+||..|+.++++.|+.. +.++     +..+. .|+||||+|+..|+.+++++|+++    |++
T Consensus        27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~  100 (232)
T 2rfa_A           27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELY-EGQTALHIAVINQNVNLVRALLAR----GAS  100 (232)
T ss_dssp             CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHT----TCC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCC-CCcCHHHHHHHcCCHHHHHHHHhC----CCC
Confidence            77777765 699999999999999999988875 4443     44554 689999999999999999999985    777


Q ss_pred             cccccC-------------CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHH----HHHHh
Q 013316           78 LEAQNM-------------YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR----ELLLW  140 (445)
Q Consensus        78 v~~~d~-------------~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~----~~ll~  140 (445)
                      ++.++.             .|.||||+|+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++    ++|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~~~~~~~~~i~~~Ll~  179 (232)
T 2rfa_A          101 VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL-HILILQPNKTFACQMYNLLLS  179 (232)
T ss_dssp             TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHTCSCHHHHHHHHHHHHH
T ss_pred             CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCChHHHHHHHHHHHh
Confidence            777654             799999999999999999999999999999999999999 777788888877    88888


Q ss_pred             hhhhH
Q 013316          141 HSEEQ  145 (445)
Q Consensus       141 ~~~~~  145 (445)
                      ++++.
T Consensus       180 ~g~~~  184 (232)
T 2rfa_A          180 YDGGD  184 (232)
T ss_dssp             TTCSC
T ss_pred             cCCch
Confidence            88765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.86  E-value=9.9e-22  Score=178.34  Aligned_cols=150  Identities=21%  Similarity=0.253  Sum_probs=98.4

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      ++|++++..+ .|.||||+|+..|+.++++.|+...+.+++..+. .|+||||+|+..++.+++++|++.    |++++.
T Consensus        65 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~  139 (237)
T 3b7b_A           65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSK----GSDINI  139 (237)
T ss_dssp             TTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTC
T ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCc
Confidence            3455555444 4666666666666666666666554456666654 566777777766677777776663    666677


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|...++.+++++|++++++...++..+.++..
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  215 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL-HIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ  215 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHH
Confidence            777777777777777777777777777777777777777777 5666666777777777777666555544444433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.86  E-value=7e-22  Score=167.34  Aligned_cols=137  Identities=25%  Similarity=0.370  Sum_probs=118.4

Q ss_pred             CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316           13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA   92 (445)
Q Consensus        13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A   92 (445)
                      +.||||+||..|+.+.++.++...+.+++..+. .|+||||+ +..|+.+++++|+++    |++++.+|..|.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQV-MMFGSTAIALELLKQ----GASPNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHH-SCTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC-CCCcHHHH-HHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHH
Confidence            468999999999999999999876668888886 79999999 899999999999985    888999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        93 ~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      +..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++. ++...++..+.++..
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence            999999999999999999999999999999 778888899999999988 666665555544443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.86  E-value=2.1e-21  Score=205.60  Aligned_cols=213  Identities=17%  Similarity=0.246  Sum_probs=157.2

Q ss_pred             HHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          165 ENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       165 ~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      ...+. .++|++.+++.+...+..       ...+......+..++||+||||||||++|+++|+.++.       +|+.
T Consensus       453 ~~~l~~~v~g~~~~~~~l~~~i~~-------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-------~~~~  518 (758)
T 1r6b_X          453 GDRLKMLVFGQDKAIEALTEAIKM-------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------ELLR  518 (758)
T ss_dssp             HHHHTTTSCSCHHHHHHHHHHHHH-------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-------EEEE
T ss_pred             HHHHHhhccCHHHHHHHHHHHHHH-------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-------CEEE
Confidence            33343 388999998888775432       23333333344558999999999999999999999854       8999


Q ss_pred             eecccccc-----cccCC-------c-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc--
Q 013316          244 VQRTDLVG-----EFVGH-------T-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--  308 (445)
Q Consensus       244 ~~~~~l~~-----~~~g~-------~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~--  308 (445)
                      ++++.+..     .++|.       . ...+...++.+.++||||||||++.+           ++++.|++.|+++.  
T Consensus       519 i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~~~~~  587 (758)
T 1r6b_X          519 FDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLT  587 (758)
T ss_dssp             EEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEE
T ss_pred             EechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH-----------HHHHHHHHHhcCcEEE
Confidence            99988643     23332       1 23456777888899999999999876           78999999998643  


Q ss_pred             -----------EEEEEecCchhHH-------------------HH-HhhCcccccccccceeCCCCCHHHHHHHHHHHHh
Q 013316          309 -----------VVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN  357 (445)
Q Consensus       309 -----------~~~i~a~~~~~~~-------------------~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~  357 (445)
                                 +++|++++.....                   .+ -..+|+|++||+..|.|++|+.+++..|++.++.
T Consensus       588 ~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~  667 (758)
T 1r6b_X          588 DNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV  667 (758)
T ss_dssp             ETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHH
Confidence                       4577777652200                   00 1347999999999999999999999999999998


Q ss_pred             cccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC--chhhHHHHHHHHHh
Q 013316          358 NQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN--GGLVDPMLVNAREN  410 (445)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n--~r~l~~~~~~~~~~  410 (445)
                      +....+...++  ...++++++..+..+.|      ++|  +|.+++++++++..
T Consensus       668 ~~~~~~~~~~~--~~~~~~~a~~~l~~~~~------~~~~g~R~l~~~i~~~~~~  714 (758)
T 1r6b_X          668 ELQVQLDQKGV--SLEVSQEARNWLAEKGY------DRAMGARPMARVIQDNLKK  714 (758)
T ss_dssp             HHHHHHHHTTE--EEEECHHHHHHHHHHHC------BTTTBTTTHHHHHHHHHTH
T ss_pred             HHHHHHHHCCc--EEEeCHHHHHHHHHhCC------CcCCCchHHHHHHHHHHHH
Confidence            76554443322  23678889998887777      445  99999999998775

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.86  E-value=1.1e-21  Score=183.65  Aligned_cols=162  Identities=15%  Similarity=0.211  Sum_probs=117.0

Q ss_pred             CCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEE
Q 013316          202 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILF  274 (445)
Q Consensus       202 ~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~  274 (445)
                      +...|.++||+||||||||++|++||+.++.       +|+.++++.+.+.|+|.++..++..|..+       .++|||
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~  104 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF  104 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            4566789999999999999999999999976       99999999999999999999999999888       679999


Q ss_pred             EcCccccccCCCCCC--chhHHHHHHHHHhhccC---------------CcEEEEEecCchhHHHHHhhCccccc--ccc
Q 013316          275 VDEAYRLIPMQKADD--KDYGIEALEEIMSVMDG---------------GKVVVIFAGYSEPMKRVIASNEGFCR--RVT  335 (445)
Q Consensus       275 lDEid~l~~~~~~~~--~~~~~~~~~~ll~~~~~---------------~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~  335 (445)
                      |||||++.+++++..  ......+++.|++.+++               .++++|++|+.....     +|++++  ||+
T Consensus       105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~l-----d~al~R~~R~d  179 (293)
T 3t15_A          105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTL-----YAPLIRDGRME  179 (293)
T ss_dssp             EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC-------CHHHHHHHEE
T ss_pred             EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccC-----CHHHhCCCCCc
Confidence            999999998554221  22345677888888752               357788887654432     788886  998


Q ss_pred             cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHh
Q 013316          336 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK  390 (445)
Q Consensus       336 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  390 (445)
                      ..+.+  |+.+++.+|++.++...             +++.+.++.+...+.+.+
T Consensus       180 ~~i~~--P~~~~r~~Il~~~~~~~-------------~~~~~~l~~~~~~~~~~~  219 (293)
T 3t15_A          180 KFYWA--PTREDRIGVCTGIFRTD-------------NVPAEDVVKIVDNFPGQS  219 (293)
T ss_dssp             EEEEC--CCHHHHHHHHHHHHGGG-------------CCCHHHHHHHHHHSCSCC
T ss_pred             eeEeC--cCHHHHHHHHHHhccCC-------------CCCHHHHHHHhCCCCccc
Confidence            88875  59999999999877642             345567777776665433

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.86  E-value=1.7e-21  Score=172.18  Aligned_cols=141  Identities=18%  Similarity=0.249  Sum_probs=125.1

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..+.||||+||..|+.+.++.++...+.+++..+. .|+||||+|+..|+.+++++|++.    |++++.++..|.||||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~   77 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALIDR----GADINLQNSISDSPYL   77 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHH
Confidence            45789999999999999999999888879999987 799999999999999999999995    8899999999999999


Q ss_pred             HHHHcCCHHHHHHHH-hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh-hhHHhhhhhhhhhhh
Q 013316           91 MAAKNGCNEAAKLLL-AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS-EEQRKRRALEACSET  157 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~-~~~~~~~~~~~~~~~  157 (445)
                      +|+..|+.+++++|+ ..+++++.++..|.||| |+|+..++.+++++|++.+ .+...++..+.++..
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  145 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI  145 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence            999999999999999 67889999999999999 7888889999999999998 666655554444443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.86  E-value=8.1e-22  Score=182.72  Aligned_cols=128  Identities=25%  Similarity=0.338  Sum_probs=114.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++... .|.||+|+|+..++.++++.|+. .++++|..+. .|+||||+||..|+.+++++|+++    |+++|.
T Consensus       107 ~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~----gadvn~  180 (269)
T 4b93_B          107 KHGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDL-SGNTPLIYACSGGHHELVALLLQH----GASINA  180 (269)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCT-TCCCHHHHHHHTTCGGGHHHHHHT----TCCTTC
T ss_pred             hcCCCcCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHC----CCCCCc
Confidence            4677787766 69999999999999999988775 6899999987 799999999999999999999995    899999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL  138 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l  138 (445)
                      ++..|.||||+|+..|+.+++++|+++|++++.+|.+|+||| ++|+..+  +++++|
T Consensus       181 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL-~~A~~~~--~i~~lL  235 (269)
T 4b93_B          181 SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV-DCAEQNS--KIMELL  235 (269)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSG-GGSCTTC--HHHHHT
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHhCC--cHHHHH
Confidence            999999999999999999999999999999999999999999 6666544  455555

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.86  E-value=1e-20  Score=180.27  Aligned_cols=183  Identities=20%  Similarity=0.250  Sum_probs=139.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|.+..++.+.+++......           ...+.+++|+||||||||++|+++|+.++.       +|+.+++
T Consensus        10 ~~~~~ig~~~~~~~l~~~l~~~~~~-----------~~~~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~   71 (324)
T 1hqc_A           10 TLDEYIGQERLKQKLRVYLEAAKAR-----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSG   71 (324)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHHHH-----------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECT
T ss_pred             cHHHhhCHHHHHHHHHHHHHHHHcc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence            3567999999999988876544211           235678999999999999999999998865       8888888


Q ss_pred             ccccccccCCchhHHHHHHHH--ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------
Q 013316          247 TDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------  307 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~--a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------  307 (445)
                      +.+.      ....+...|..  +.+++|||||||.+.+           ..++.|+..++..                 
T Consensus        72 ~~~~------~~~~l~~~l~~~~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~  134 (324)
T 1hqc_A           72 PAIE------KPGDLAAILANSLEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRL  134 (324)
T ss_dssp             TTCC------SHHHHHHHHTTTCCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred             cccC------ChHHHHHHHHHhccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhcccccccccccc
Confidence            7653      23455566665  5789999999998875           5566677766643                 


Q ss_pred             ---cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH
Q 013316          308 ---KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  384 (445)
Q Consensus       308 ---~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (445)
                         .+++|++++....     .+++|++||+..+.|++|+.+|+.+++..++.+..           ..++++++..+. 
T Consensus       135 ~~~~~~~i~~t~~~~~-----~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-----------~~~~~~~~~~l~-  197 (324)
T 1hqc_A          135 ELPRFTLIGATTRPGL-----ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAALEIG-  197 (324)
T ss_dssp             ECCCCEEEEEESCCSS-----CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHH-
T ss_pred             CCCCEEEEEeCCCccc-----CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH-
Confidence               3567777766532     37889999988999999999999999999887541           245667776554 


Q ss_pred             HHHHHhhhcccCchhhHHHHHHH
Q 013316          385 KETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       385 ~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      .++      +||.|.+.++++++
T Consensus       198 ~~~------~G~~r~l~~~l~~~  214 (324)
T 1hqc_A          198 RRS------RGTMRVAKRLFRRV  214 (324)
T ss_dssp             HHS------CSCHHHHHHHHHHH
T ss_pred             HHc------cCCHHHHHHHHHHH
Confidence            444      78999999999887

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.86  E-value=1.5e-21  Score=164.94  Aligned_cols=130  Identities=28%  Similarity=0.372  Sum_probs=119.7

Q ss_pred             CCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      +.|++.+....|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+
T Consensus        23 ~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~   96 (153)
T 1awc_B           23 ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTK-VDRTPLHMAASEGHANIVEVLLKH----GADVNAK   96 (153)
T ss_dssp             HHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCC
T ss_pred             HcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcChHHHHHHHHHc----CCCCCCC
Confidence            356677766789999999999999999998885 6888999987 799999999999999999999995    8899999


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL  138 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l  138 (445)
                      |..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|
T Consensus        97 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF-DISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999999 788888999999887

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.85  E-value=9.3e-22  Score=180.88  Aligned_cols=136  Identities=24%  Similarity=0.288  Sum_probs=120.7

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCC------------CCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPV------------MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL   78 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~------------~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v   78 (445)
                      ..|.||||+||..|+.++++.|+. .+++++..+..            .|+||||+|+..|+.+++++|++.+. .|+++
T Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~ga~~  165 (256)
T 2etb_A           88 YQGHSALHIAIEKRSLQCVKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH-QPASL  165 (256)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCT
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCc
Confidence            469999999999999999998876 58899988862            19999999999999999999999210 18899


Q ss_pred             ccccCCCCcHHHHHHH--cCCHH-------HHHHHHhcCCCC-------cccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           79 EAQNMYGETPLHMAAK--NGCNE-------AAKLLLAHGAFI-------EAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        79 ~~~d~~g~tpLh~A~~--~g~~~-------~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      +.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||| ++|+..++.+++++|++++
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL-KLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH-HHHHHhCCHHHHHHHHhCC
Confidence            9999999999999998  88888       999999999999       99999999999 8888899999999999999


Q ss_pred             hhHHhhh
Q 013316          143 EEQRKRR  149 (445)
Q Consensus       143 ~~~~~~~  149 (445)
                      .+.....
T Consensus       245 ~~~~~~~  251 (256)
T 2etb_A          245 FSGAAAH  251 (256)
T ss_dssp             HHHHHHH
T ss_pred             CCCCCcc
Confidence            8765443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.85  E-value=1.6e-21  Score=176.37  Aligned_cols=142  Identities=28%  Similarity=0.373  Sum_probs=127.2

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc-----ccccCCCC
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGE   86 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v-----~~~d~~g~   86 (445)
                      .|.||||+||..|+.++++.|+...+.+++..+. .|+||||+|+..|+.+++++|++.    |+++     +.+|..|.
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g~   76 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDNLEAAMVLMEA----APELVFEPMTSELYEGQ   76 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CchhccccccccCCCCc
Confidence            4789999999999999999999877999999987 799999999999999999999995    6665     66788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCccccc-------------CCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhh
Q 013316           87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEA  153 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~-------------~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~  153 (445)
                      ||||+|+..|+.+++++|+++|++++.++.             .|.||| |+|+..++.+++++|++++++...++..+.
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~  155 (232)
T 2rfa_A           77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEEIVRLLIEHGADIRAQDSLGN  155 (232)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            999999999999999999999999998876             799999 888888999999999999998887776666


Q ss_pred             hhhhHH
Q 013316          154 CSETKA  159 (445)
Q Consensus       154 ~~~~~a  159 (445)
                      ++...+
T Consensus       156 t~L~~A  161 (232)
T 2rfa_A          156 TVLHIL  161 (232)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            665443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.85  E-value=1.1e-21  Score=184.44  Aligned_cols=151  Identities=22%  Similarity=0.257  Sum_probs=129.2

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      ++|++++..+ .|.||||+||..|+.++++.|+. .|++++..+. .|+||||+|+..|+.+++++|+++    |++++.
T Consensus        61 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~----g~~~~~  134 (299)
T 1s70_B           61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQ----GAHVGA  134 (299)
T ss_dssp             HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTC
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhC----CCCCCC
Confidence            4577777765 69999999999999999998875 6889999987 799999999999999999999996    555554


Q ss_pred             cc------------------------------------------------------------CCCCcHHHHHHHcCCHHH
Q 013316           81 QN------------------------------------------------------------MYGETPLHMAAKNGCNEA  100 (445)
Q Consensus        81 ~d------------------------------------------------------------~~g~tpLh~A~~~g~~~~  100 (445)
                      .|                                                            ..|.||||+|+..|+.++
T Consensus       135 ~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  214 (299)
T 1s70_B          135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV  214 (299)
T ss_dssp             CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH
Confidence            33                                                            457789999999999999


Q ss_pred             HHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          101 AKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       101 ~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      +++|+++|++++.+|..|+||| |+|+..++.+++++|+++|+++..++..+.++...+
T Consensus       215 v~~Ll~~g~d~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          215 LKLLIQARYDVNIKDYDGWTPL-HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             HHHHHHcCCCCCCcCCCCCcHH-HHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999 788888999999999999998887776666665443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.85  E-value=1.5e-20  Score=201.04  Aligned_cols=215  Identities=17%  Similarity=0.278  Sum_probs=156.3

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ++++|++++++.+...+....       .+......+..+++|+||||||||++|++||+.+...+    .+|+.++|+.
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~-------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~----~~~i~i~~~~  626 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE----EAMIRIDMTE  626 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHG-------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG----GGEEEECTTT
T ss_pred             cccCCcHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC----CcEEEEechh
Confidence            568999999988888665432       12222222335899999999999999999999995422    2899999987


Q ss_pred             cccc------------ccCCch-hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------
Q 013316          249 LVGE------------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  307 (445)
Q Consensus       249 l~~~------------~~g~~~-~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  307 (445)
                      +...            |+|+.. ..+...+....++||||||||.+.+           ++++.|++.|+++        
T Consensus       627 ~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~g~  695 (854)
T 1qvr_A          627 YMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRLTDSHGR  695 (854)
T ss_dssp             CCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEECCSSSC
T ss_pred             ccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCH-----------HHHHHHHHHhccCceECCCCC
Confidence            5432            335543 4566777778889999999998876           8899999999875        


Q ss_pred             -----cEEEEEecCchh---------------HHHHH------hhCcccccccccceeCCCCCHHHHHHHHHHHHhcccc
Q 013316          308 -----KVVVIFAGYSEP---------------MKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTE  361 (445)
Q Consensus       308 -----~~~~i~a~~~~~---------------~~~~~------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~  361 (445)
                           +.++|++++...               ....+      ...|+|++||+..+.|++|+.+++..|+++++.+...
T Consensus       696 ~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~  775 (854)
T 1qvr_A          696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA  775 (854)
T ss_dssp             CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence                 456777777521               11111      2368899999999999999999999999999987765


Q ss_pred             cccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316          362 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  411 (445)
Q Consensus       362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~  411 (445)
                      ++...++  ...++++++..+..+.|    ..++|+|++++++++++...
T Consensus       776 ~~~~~~~--~~~~~~~a~~~L~~~~~----~~~gn~R~L~~~i~~~~~~~  819 (854)
T 1qvr_A          776 RLAEKRI--SLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETP  819 (854)
T ss_dssp             HHHTTTC--EEEECHHHHHHHHHHHC----BTTTBTSTHHHHHHHHTHHH
T ss_pred             HHHhCCc--eEEECHHHHHHHHHcCC----CCCCChHHHHHHHHHHHHHH
Confidence            5443322  23678889988887766    23799999999999985543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.85  E-value=1.9e-21  Score=175.29  Aligned_cols=139  Identities=23%  Similarity=0.248  Sum_probs=80.2

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhC-CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLREN-PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      .|.||||+|+..|+.++++.|+... +.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|..|.||||
T Consensus        71 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~  145 (228)
T 2dzn_A           71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIEN----GASVRIKDKFNQIPLH  145 (228)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHc----CCCccccCCCCCCHHH
Confidence            4556666666666666665555331 145555554 466666666666666666666653    5556666666666666


Q ss_pred             HHHHcCCHHHHHHHHhcC-CCCcccccCCCChhhhhhcCCCChHHHHHHH-hhhhhHHhhhhhhhhhh
Q 013316           91 MAAKNGCNEAAKLLLAHG-AFIEAKANEGKTPLDHLSNGPGSAKLRELLL-WHSEEQRKRRALEACSE  156 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll-~~~~~~~~~~~~~~~~~  156 (445)
                      +|+..|+.+++++|++.| ++++.+|..|+||| |+|...++.+++++|+ +.|+++..++..+.++.
T Consensus       146 ~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l  212 (228)
T 2dzn_A          146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL-FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAE  212 (228)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGG
T ss_pred             HHHHcCCHHHHHHHHhcCcccccCcCCCCCCHH-HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHH
Confidence            666666666666666666 66666666666666 5555555666666666 55555555444444443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.85  E-value=4.1e-21  Score=162.59  Aligned_cols=128  Identities=20%  Similarity=0.295  Sum_probs=117.2

Q ss_pred             cCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC
Q 013316            5 QDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM   83 (445)
Q Consensus         5 ~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~   83 (445)
                      .+++..+ .|.||||+ |..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|.
T Consensus        27 ~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~   99 (156)
T 1bd8_A           27 VHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQDT-SGTSPVHDAARTGFLDTLKVLVEH----GADVNVPDG   99 (156)
T ss_dssp             CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCT
T ss_pred             cCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHc----CCCCCCcCC
Confidence            3555555 69999999 99999999998885 5889999987 799999999999999999999995    889999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                      .|.||||+|+..|+.+++++|++. ++++.+|..|.||| ++|...++.+++++|+++
T Consensus       100 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l-~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          100 TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL-ELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHH-HHHHHSCCHHHHHHHHTT
T ss_pred             CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999 99999999999999 788889999999999764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.85  E-value=1.6e-20  Score=182.21  Aligned_cols=215  Identities=17%  Similarity=0.203  Sum_probs=148.3

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      |++++|++..++.+..+...+.           .+..++.++||+||||||||++|+++++.+..     ..+|+.+++.
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~-----------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~~~~~~~  106 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIR-----------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-----DTPFTAIAGS  106 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-----SCCEEEEEGG
T ss_pred             hhhccChHHHHHHHHHHHHHHH-----------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----cCCcccccch
Confidence            5679999999888776554442           12334578999999999999999999999863     2267777765


Q ss_pred             ccccccc-------------------------------------------------CCchhHHHHHHHHcc---------
Q 013316          248 DLVGEFV-------------------------------------------------GHTGPKTRRRIKEAE---------  269 (445)
Q Consensus       248 ~l~~~~~-------------------------------------------------g~~~~~~~~~~~~a~---------  269 (445)
                      .+.+.+.                                                 |.....+++.+..+.         
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~  186 (368)
T 3uk6_A          107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA  186 (368)
T ss_dssp             GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence            5332221                                                 222344455443321         


Q ss_pred             ---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--cEEEEEec---------CchhHHHHHhhCcccccccc
Q 013316          270 ---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAG---------YSEPMKRVIASNEGFCRRVT  335 (445)
Q Consensus       270 ---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~i~a~---------~~~~~~~~~~~~~~l~~R~~  335 (445)
                         ++||||||||.+.+           +.++.|++.++..  .+++++++         +.+..   ...+|+|++||.
T Consensus       187 ~~~~~vl~IDEi~~l~~-----------~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~---~~l~~~l~sR~~  252 (368)
T 3uk6_A          187 EIIPGVLFIDEVHMLDI-----------ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSP---HGIPIDLLDRLL  252 (368)
T ss_dssp             --CBCEEEEESGGGSBH-----------HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEE---TTCCHHHHTTEE
T ss_pred             cccCceEEEhhccccCh-----------HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCc---ccCCHHHHhhcc
Confidence               36999999999875           7788888888763  34433332         11111   223789999995


Q ss_pred             cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhh
Q 013316          336 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL  415 (445)
Q Consensus       336 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~  415 (445)
                      . +.|++|+.+++.+|++.++.+.           ...++++++..+....+      +||.|.+.++++++......+ 
T Consensus       253 ~-i~~~~~~~~e~~~il~~~~~~~-----------~~~~~~~~l~~l~~~~~------~G~~r~~~~ll~~a~~~A~~~-  313 (368)
T 3uk6_A          253 I-VSTTPYSEKDTKQILRIRCEEE-----------DVEMSEDAYTVLTRIGL------ETSLRYAIQLITAASLVCRKR-  313 (368)
T ss_dssp             E-EEECCCCHHHHHHHHHHHHHHT-----------TCCBCHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHT-
T ss_pred             E-EEecCCCHHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHh-
Confidence            5 8999999999999999988763           23467778776665554      388999999999985443221 


Q ss_pred             ccCCCChhhhhhccHHHHHHHHHH
Q 013316          416 SFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       416 ~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                              +...|+.+|+.++++.
T Consensus       314 --------~~~~It~~~v~~a~~~  329 (368)
T 3uk6_A          314 --------KGTEVQVDDIKRVYSL  329 (368)
T ss_dssp             --------TCSSBCHHHHHHHHHH
T ss_pred             --------CCCCCCHHHHHHHHHH
Confidence                    2247999999998875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.85  E-value=2.1e-21  Score=176.54  Aligned_cols=147  Identities=22%  Similarity=0.285  Sum_probs=83.6

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.+...+.+++..
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  112 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR  112 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc
Confidence            344555444 46666666666666666665553 4556666554 56666666666666666666665422222255555


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE  152 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~  152 (445)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||| |+|+..++.+++++|++++++...++..+
T Consensus       113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (241)
T 1k1a_A          113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL-IHAVENNSLSMVQLLLQHGANVNAQMYSG  183 (241)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred             CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            5556666666666666666666666666665555 5556666 45555555566666665555544443333

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.85  E-value=1.7e-21  Score=165.94  Aligned_cols=136  Identities=20%  Similarity=0.290  Sum_probs=123.9

Q ss_pred             CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      ++.|++++..+ .|.||||+|+. |+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++
T Consensus        25 l~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~   97 (162)
T 1ihb_A           25 LQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDR-TGFAVIHDAARAGFLDTLQTLLEF----QADVN   97 (162)
T ss_dssp             TTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTT
T ss_pred             HhCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCC
Confidence            46788888776 69999999999 99999998886 5889999987 799999999999999999999995    88999


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~-~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      .+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.||| ++|...++.+++++|+++|++
T Consensus        98 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC-DLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTC--
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999998 599999999999 888889999999999998874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.85  E-value=4.6e-21  Score=172.24  Aligned_cols=150  Identities=23%  Similarity=0.319  Sum_probs=135.1

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+|+..|+.++++.|+...+.+++..+. .|+||||+|+..++.+++++|+++    |++++.
T Consensus        46 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~  120 (223)
T 2f8y_A           46 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINS----HADVNA  120 (223)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCTTC
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHc----CCCCcC
Confidence            4677888776 6999999999999999999999877668888886 799999999999999999999995    889999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|+..++.+++++|+++++++..++..+.++..
T Consensus       121 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  196 (223)
T 2f8y_A          121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  196 (223)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHH-HHHHHcCCHHHHHHHHHcCCCCccccccCCCHHH
Confidence            999999999999999999999999999999999999999999 7888889999999999999987776655544443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.85  E-value=1e-21  Score=180.60  Aligned_cols=150  Identities=19%  Similarity=0.130  Sum_probs=126.1

Q ss_pred             CccCccC-----CCCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCC-----------CCCCCCChHHHHHHhCCcHHH
Q 013316            3 KNQDRRS-----RSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNE-----------RNPVMAQTPLHVSAGYNKAEI   63 (445)
Q Consensus         3 ~~~~~~~-----~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~-----------~~~~~g~tpLh~A~~~g~~~i   63 (445)
                      .|++.+.     ...|.||||+||..   |+.++++.|+.. +.+++.           .+. .|+||||+|+..|+.++
T Consensus        28 ~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~  105 (256)
T 2etb_A           28 NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRSLQC  105 (256)
T ss_dssp             HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTT-TTCCHHHHHHHTTCHHH
T ss_pred             cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcccccccccc-cCCCHHHHHHHcCCHHH
Confidence            4667775     45799999999999   999999988865 444332           223 69999999999999999


Q ss_pred             HHHhhcCCCCCCcccccccCC-------------CCcHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCChhhhhhc
Q 013316           64 VKSLLEWPGNDKVELEAQNMY-------------GETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANEGKTPLDHLSN  127 (445)
Q Consensus        64 v~~Ll~~~~~~g~~v~~~d~~-------------g~tpLh~A~~~g~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~a~  127 (445)
                      +++|+++    |++++.++..             |.||||+|+..|+.+++++|++   +|++++.+|..|+||| |+|+
T Consensus       106 v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpL-h~A~  180 (256)
T 2etb_A          106 VKLLVEN----GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL-HALV  180 (256)
T ss_dssp             HHHHHHT----TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH-HHHH
T ss_pred             HHHHHHc----CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHH-HHHH
Confidence            9999995    8899988876             9999999999999999999999   9999999999999999 5565


Q ss_pred             C--CCChH-------HHHHHHhhhhhH-------HhhhhhhhhhhhHH
Q 013316          128 G--PGSAK-------LRELLLWHSEEQ-------RKRRALEACSETKA  159 (445)
Q Consensus       128 ~--~~~~~-------i~~~ll~~~~~~-------~~~~~~~~~~~~~a  159 (445)
                      .  .++.+       ++++|++++++.       ..++..+.++...+
T Consensus       181 ~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             HcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence            5  67777       999999999998       66666665655443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.85  E-value=1.9e-21  Score=178.62  Aligned_cols=134  Identities=21%  Similarity=0.310  Sum_probs=95.8

Q ss_pred             HHHHHcCCHHHHHHHHhhCCCCcCCC-CCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcC
Q 013316           18 HGCAQSGDLLAFQRLLRENPSLLNER-NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG   96 (445)
Q Consensus        18 ~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g   96 (445)
                      ..+...++.++++.|+.. +.+++.. +. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+|+..|
T Consensus        28 ~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~  101 (253)
T 1yyh_A           28 NSEEEEDAPAVISDFIYQ-GASLHNQTDR-TGETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSAD  101 (253)
T ss_dssp             -------------------------CCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             chhhcCCChHHHHHHHHc-cCCcccccCC-CCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcC
Confidence            447778899999988865 5666544 54 799999999999999999999995    8899999999999999999999


Q ss_pred             CHHHHHHHHhcCC-CCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316           97 CNEAAKLLLAHGA-FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus        97 ~~~~~~~Ll~~ga-~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                      +.+++++|++.|+ +++.++..|.||| ++|+..++.+++++|++.+.+...++..+.++...
T Consensus       102 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~  163 (253)
T 1yyh_A          102 AQGVFQILIRNRATDLDARMHDGTTPL-ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW  163 (253)
T ss_dssp             CHHHHHHHHHSTTSCTTCCCTTCCCHH-HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             CHHHHHHHHHcCCCCccccCCCCCcHH-HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            9999999999887 8899999999999 77778888999999999988877665555555443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=2.1e-21  Score=174.68  Aligned_cols=133  Identities=26%  Similarity=0.293  Sum_probs=111.5

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+||..|+.+++++|++.   .|++++.+|..|.||||+
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDK-AGSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccCcHHHHHHHHh-CCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHHH
Confidence            46899999999999999998886 6789999987 799999999999999999999985   388999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhh
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA  150 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~  150 (445)
                      |+..|+.+++++|+++|++++.+|..|.||| ++|...+..++++.++..++.....+.
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAF-DMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHH-HHCCSHHHHHHHC--------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHH-HHhcchhHHHHHHHHhccchhhhccch
Confidence            9999999999999999999999999999999 788888889999998888877655543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.85  E-value=2e-21  Score=180.89  Aligned_cols=132  Identities=24%  Similarity=0.245  Sum_probs=99.7

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCC---cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCc
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSL---LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET   87 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~t   87 (445)
                      ..|.||||+||..|+.++++.|+.. +.+   ++..+. .|+||||+|+..|+.+++++|+++    |++++.+|..|.|
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t   80 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAA----GAGVLVAERGGHT   80 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCSSCCCTTSCC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            4677888888888888888777754 333   666665 688888888888888888888874    7778888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCC-----------------------------------------------CcccccCCCC
Q 013316           88 PLHMAAKNGCNEAAKLLLAHGAF-----------------------------------------------IEAKANEGKT  120 (445)
Q Consensus        88 pLh~A~~~g~~~~~~~Ll~~ga~-----------------------------------------------~~~~~~~g~t  120 (445)
                      |||+|+..|+.+++++|+++|++                                               ++.++..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            88888888888888888877654                                               5667777888


Q ss_pred             hhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316          121 PLDHLSNGPGSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus       121 pl~~~a~~~~~~~i~~~ll~~~~~~~~~~  149 (445)
                      || |+|+..++.+++++|++++++.....
T Consensus       161 ~L-~~A~~~g~~~~v~~Ll~~g~~~~~~~  188 (282)
T 1oy3_D          161 PL-HVAVIHKDAEMVRLLRDAGADLNKPE  188 (282)
T ss_dssp             HH-HHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             HH-HHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            88 66777777888888888777665544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.84  E-value=3.5e-21  Score=177.36  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=119.2

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC-------------CCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP-------------VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL   78 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v   78 (445)
                      .|+||||+||..|+.++++.|+. .+++++..+.             ..|+||||+|+..|+.+++++|++.+. .|+++
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~ga~~  169 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH-KQADL  169 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCC
Confidence            69999999999999999998886 6899998872             269999999999999999999999210 17899


Q ss_pred             ccccCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCC-------cccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           79 EAQNMYGETPLHMAAKNGC---------NEAAKLLLAHGAFI-------EAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        79 ~~~d~~g~tpLh~A~~~g~---------~~~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      +.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|+||| ++|+..++.+++++|++++
T Consensus       170 ~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHHHHHHH
T ss_pred             cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH-HHHHHcCCHHHHHHHHHhC
Confidence            9999999999999998887         79999999999999       78999999999 8888899999999999999


Q ss_pred             hhHHhh
Q 013316          143 EEQRKR  148 (445)
Q Consensus       143 ~~~~~~  148 (445)
                      .++...
T Consensus       249 ~~~~~~  254 (260)
T 3jxi_A          249 IADAAA  254 (260)
T ss_dssp             HHHHC-
T ss_pred             CCcccc
Confidence            876554

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.84  E-value=2.1e-21  Score=176.28  Aligned_cols=151  Identities=22%  Similarity=0.187  Sum_probs=129.6

Q ss_pred             CccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCC--Cccccccc
Q 013316            6 DRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND--KVELEAQN   82 (445)
Q Consensus         6 ~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~--g~~v~~~d   82 (445)
                      +.+..+ .|.||||+||..|+.++++.|+ ..|++++..+. .|+||||+|+..|+.+++++|++.+...  ...++..+
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  114 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence            556555 5999999999999999998777 46899999987 7999999999999999999999963211  12357788


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccc-CCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      ..|.||||+|+..|+.+++++|+++|++++.++. .|+||| |+|+..++.+++++|+++|+++..++..+.++...+
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  191 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL-HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT  191 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHH
Confidence            9999999999999999999999999999999998 999999 788888999999999999998877766665555443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.84  E-value=1e-20  Score=188.24  Aligned_cols=102  Identities=18%  Similarity=0.176  Sum_probs=84.4

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      |++++|++.+++.+.+++..+.           .+..++.++||+||||||||++|+++|+.++.     ..+|+.++++
T Consensus        36 ~~~iiG~~~~~~~l~~~~~~~~-----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~-----~~~~~~~~~~   99 (456)
T 2c9o_A           36 ASGLVGQENAREACGVIVELIK-----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGS-----KVPFCPMVGS   99 (456)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-----TSCEEEEEGG
T ss_pred             hhhccCHHHHHHHHHHHHHHHH-----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-----CceEEEEeHH
Confidence            5779999999999888765442           12345679999999999999999999999873     1399999999


Q ss_pred             cccccccCCchhHHHHHHHHc------cCcEEEEcCccccccCCC
Q 013316          248 DLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQK  286 (445)
Q Consensus       248 ~l~~~~~g~~~~~~~~~~~~a------~~~il~lDEid~l~~~~~  286 (445)
                      .+.+.++|+++. +++.|+.+      .++||||||||.+.++++
T Consensus       100 ~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~  143 (456)
T 2c9o_A          100 EVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET  143 (456)
T ss_dssp             GGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred             HHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence            999999998887 88999887      469999999999986553

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.84  E-value=5.8e-21  Score=172.57  Aligned_cols=136  Identities=25%  Similarity=0.283  Sum_probs=123.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      ++|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|+++    |++++.
T Consensus        94 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~  167 (231)
T 3aji_A           94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFY----KASTNI  167 (231)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCSCC
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhc----CCCccc
Confidence            4677777766 69999999999999999998775 6888999887 799999999999999999999995    889999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      +|..|.||||+|+..++.+++++|+++|++++.+|..|+||+ ++|...++.+++++|..++++
T Consensus       168 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHSCHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHhhHHHHHHHHHcccccc
Confidence            999999999999999999999999999999999999999999 778888889999999877653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=2.1e-21  Score=169.43  Aligned_cols=135  Identities=17%  Similarity=0.129  Sum_probs=65.9

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcH----HHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      +++||.||..|+.+.++.++...   ++..++..|+||||+|+.+++.    +++++|++.    |+++|.+|..|+|||
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK----GADIKSRTKEGTTLF   79 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCCTH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC----CCCCCCCCCCCCcHH
Confidence            34555555555555555544332   2233311355555555555543    355555552    555555555555555


Q ss_pred             HHHHHcCC------HHHHHHHHhcCCCCcccccCCC-ChhhhhhcCCCC-----hHHHHHHHh-hhhhHHhhhhhhhhhh
Q 013316           90 HMAAKNGC------NEAAKLLLAHGAFIEAKANEGK-TPLDHLSNGPGS-----AKLRELLLW-HSEEQRKRRALEACSE  156 (445)
Q Consensus        90 h~A~~~g~------~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a~~~~~-----~~i~~~ll~-~~~~~~~~~~~~~~~~  156 (445)
                      |+|+..++      .+++++|+++|++++.+|..|+ ||| |+|...+.     .+++++|+. +|+++..++..+.++.
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL-h~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF-KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT-GGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH-HHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence            55555544      3455555555555555555555 555 33333221     235555555 5555544444443333

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=2e-21  Score=169.39  Aligned_cols=110  Identities=28%  Similarity=0.292  Sum_probs=102.3

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc-CCCCcHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPL   89 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d-~~g~tpL   89 (445)
                      ..|.||||+||..|+.++++.|+.  +.++|..+. .|+||||+|+..|+.+++++|+++    |++++.++ ..|.|||
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~~g~tpL  114 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCSSSSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCCHH
Confidence            368899999999999999999886  789999987 799999999999999999999995    88999888 8899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG  128 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~  128 (445)
                      |+|+..|+.+++++|+++|++++.+|.+|+||| ++|..
T Consensus       115 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~  152 (183)
T 3deo_A          115 HMAAGYVRPEVVEALVELGADIEVEDERGLTAL-ELARE  152 (183)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH-HHHHH
T ss_pred             HHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHH-HHHHH
Confidence            999999999999999999999999999999999 55554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.84  E-value=6.4e-21  Score=177.03  Aligned_cols=136  Identities=21%  Similarity=0.260  Sum_probs=117.0

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC-------------CCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP-------------VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE   77 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~   77 (445)
                      ..|.||||+||..|+.++++.|+. .+++++..+.             ..|+||||+|+..|+.+++++|++.+. .|++
T Consensus        99 ~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~gad  176 (273)
T 2pnn_A           99 YKGQTALHIAIERRNMTLVTLLVE-NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW-QPAD  176 (273)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS-CCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-CCCC
Confidence            379999999999999999998886 5889998874             149999999999999999999999210 1789


Q ss_pred             cccccCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCc-------ccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           78 LEAQNMYGETPLHMAAKNGC---------NEAAKLLLAHGAFIE-------AKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        78 v~~~d~~g~tpLh~A~~~g~---------~~~~~~Ll~~ga~~~-------~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                      ++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||| ++|+..++.+++++|+++
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL-~~A~~~g~~~iv~~Ll~~  255 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL-ALAASSGKIGVLAYILQR  255 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHHHHHH
T ss_pred             ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHH-HHHHHhChHHHHHHHHHC
Confidence            99999999999999999988         899999999999997       4899999999 888889999999999999


Q ss_pred             hh-hHHhhh
Q 013316          142 SE-EQRKRR  149 (445)
Q Consensus       142 ~~-~~~~~~  149 (445)
                      |+ ++..+.
T Consensus       256 ga~dp~~~~  264 (273)
T 2pnn_A          256 EIHEPECRH  264 (273)
T ss_dssp             HTC------
T ss_pred             CCCCchhhh
Confidence            98 555443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.84  E-value=9.7e-21  Score=181.78  Aligned_cols=150  Identities=25%  Similarity=0.298  Sum_probs=89.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC-------
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN-------   73 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-------   73 (445)
                      ++|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++++..       
T Consensus        79 ~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  156 (351)
T 3utm_A           79 QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH  156 (351)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence            3455555554 46666666666666666665554 3566666664 566666666666666666666654211       


Q ss_pred             -------------------------------------------------------------------------------C
Q 013316           74 -------------------------------------------------------------------------------D   74 (445)
Q Consensus        74 -------------------------------------------------------------------------------~   74 (445)
                                                                                                     .
T Consensus       157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~  236 (351)
T 3utm_A          157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK  236 (351)
T ss_dssp             SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT
T ss_pred             CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc
Confidence                                                                                           1


Q ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhh
Q 013316           75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEAC  154 (445)
Q Consensus        75 g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~  154 (445)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||| |+|...++.+++++|+++|+++..++..+.+
T Consensus       237 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~t  315 (351)
T 3utm_A          237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL-HRAALAGHLQTCRLLLSYGSDPSIISLQGFT  315 (351)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence            234445555666666666666666666666666666666666666666 5555566666666666666665555444433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.84  E-value=2e-20  Score=170.03  Aligned_cols=134  Identities=24%  Similarity=0.295  Sum_probs=119.4

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHh---hCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE   86 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~   86 (445)
                      ...|.||||+||..|+.++++.|+.   ..+.+++..+. .|+||||+|+..|+.+++++|++.    |++++.++..|.
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~   80 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLVTA----GASPMALDRHGQ   80 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc-cCCCHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCC
Confidence            3478999999999999999998886   47888999887 799999999999999999999995    788999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCC----CCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316           87 TPLHMAAKNGCNEAAKLLLAHGA----FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~~ga----~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~  149 (445)
                      ||||+|+..++.+++++|++.|+    +++..+..|.||| +.|+..++.+++++|++.+.+.....
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~~  146 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQETVQLLLERGADIDAVD  146 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHHHHHHHHcCCCccccc
Confidence            99999999999999999999987    8889999999999 77888889999999999988766544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.83  E-value=1.4e-20  Score=170.79  Aligned_cols=139  Identities=24%  Similarity=0.308  Sum_probs=65.8

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN   82 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d   82 (445)
                      |++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|++.   ...+++..+
T Consensus        34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~---~~~~~~~~~  108 (237)
T 3b7b_A           34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSN---GQMDVNCQD  108 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCT-TSCCHHHHHHHTTCHHHHHHHHTT---TCCCTTCCC
T ss_pred             CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhC---CCCCcccCC
Confidence            33443332 34455555555555554444442 3444444443 344555555555555555555443   113444444


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      ..|.||||+|+..++.+++++|+++|++++.++..|.||| |.|...++.+++++|++.+.+....
T Consensus       109 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~  173 (237)
T 3b7b_A          109 DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL-HWAAFSGCVDIAEILLAAKCDLHAV  173 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHCCHHHHHHHHTTTCCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHH-HHHHHCCCHHHHHHHHHcCCCCCCc
Confidence            4555555555555555555555555555555555555555 4444444455555555554444333

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.83  E-value=2.4e-21  Score=184.92  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=130.3

Q ss_pred             CCccCccC-CC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc---HHHHHHhhcCCCCCCc
Q 013316            2 QKNQDRRS-RS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKV   76 (445)
Q Consensus         2 ~~~~~~~~-~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~g~   76 (445)
                      +.|++++. .+ .|.||||+||..|+.++++.||. .|++++..+. .|+||||+|+..|+   .++++.|+++   ..+
T Consensus       118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~---~~~  192 (327)
T 1sw6_A          118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDY---LYP  192 (327)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHH---HGG
T ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHhcccccHHHHHHHHHh---hhc
Confidence            56788887 44 79999999999999999998885 5899999997 79999999999998   6777777775   236


Q ss_pred             ccccccCCCCcHHHHHHH----cCCHHHHHHHHhcCC-------------------------------------------
Q 013316           77 ELEAQNMYGETPLHMAAK----NGCNEAAKLLLAHGA-------------------------------------------  109 (445)
Q Consensus        77 ~v~~~d~~g~tpLh~A~~----~g~~~~~~~Ll~~ga-------------------------------------------  109 (445)
                      +++.+|..|.||||+|+.    .|+.+++++|++.++                                           
T Consensus       193 ~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll  272 (327)
T 1sw6_A          193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  272 (327)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHH
Confidence            789999999999999999    899999999998743                                           


Q ss_pred             --CCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316          110 --FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus       110 --~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                        +++.+|..|+||| |+|+..++.+++++|+++|+++..++..+.++...
T Consensus       273 ~~~~n~~d~~G~TpL-h~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~  322 (327)
T 1sw6_A          273 ANMLNAQDSNGDTCL-NIAARLGNISIVDALLDYGADPFIANKSGLRPVDF  322 (327)
T ss_dssp             HHTTTCCCTTSCCHH-HHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred             HhCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence              5788889999999 88888899999999999999988877766666543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.83  E-value=8.1e-21  Score=176.75  Aligned_cols=147  Identities=20%  Similarity=0.210  Sum_probs=128.6

Q ss_pred             ccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHH-----hCCcHHHHHHhhcCCCCCCccccc
Q 013316            7 RRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSA-----GYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         7 ~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~-----~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      .+..+ .|.||||+||..|+.++++.|+.....+++..+. .|+||||+|+     ..++.+++++|++.    |.+.+.
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~----g~~~~~  178 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR-AGYSPIMLTALATLKTQDDIETVLQLFRL----GNINAK  178 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHGGGCCCCSHHHHHHHHHHHHH----SCTTCC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC-CCCCHHHHHHHHHhhhhhhHHHHHHHHHc----CCCccc
Confidence            34444 6999999999999999999998765558999887 7999999999     66889999999985    777888


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh-hhhhHHhhhhhhhhhhhHH
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW-HSEEQRKRRALEACSETKA  159 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~-~~~~~~~~~~~~~~~~~~a  159 (445)
                      .+..|.||||+|+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|+. .+++...++..+.++...+
T Consensus       179 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A  257 (276)
T 4hbd_A          179 ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL-MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA  257 (276)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH
Confidence            899999999999999999999999999999999999999999 78888899999999999 8888877776666665544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.83  E-value=9.8e-21  Score=183.34  Aligned_cols=151  Identities=15%  Similarity=0.106  Sum_probs=110.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCC--------------------------------------
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNE--------------------------------------   42 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~--------------------------------------   42 (445)
                      +.|++++..+ .|.||||+||..|+.++++.|+.. +.+++.                                      
T Consensus        41 ~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  119 (364)
T 3ljn_A           41 ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLN  119 (364)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred             HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHh
Confidence            3556666655 477777777777777777766654 333333                                      


Q ss_pred             --------------CCCCCCChHHHHHHhCC--cHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh
Q 013316           43 --------------RNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA  106 (445)
Q Consensus        43 --------------~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~  106 (445)
                                    .+. .|+||||+|+..|  +.+++++|+++    |++++.+|..|.||||+|+..|+.+++++|++
T Consensus       120 ~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  194 (364)
T 3ljn_A          120 ECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQL----GASPTAKDKADETPLMRAMEFRNREALDLMMD  194 (364)
T ss_dssp             CCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                          443 5778888888888  78888888874    77888888888888888888888888888888


Q ss_pred             cCCC-----CcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          107 HGAF-----IEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       107 ~ga~-----~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      +|++     ++.+|..|+||| |+|+..++.+++++|++++++++.++..+.++...+
T Consensus       195 ~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  251 (364)
T 3ljn_A          195 TVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS  251 (364)
T ss_dssp             HCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            8888     888888888888 777778888888888888887776665555554433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.83  E-value=5.6e-21  Score=178.73  Aligned_cols=130  Identities=18%  Similarity=0.129  Sum_probs=116.1

Q ss_pred             ccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCC
Q 013316            7 RRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG   85 (445)
Q Consensus         7 ~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g   85 (445)
                      ++..+ .|.||||+||..|+.++++.|+. .+.+++..+   |+||||+|+..|+.+++++|+++    |++++.+|..|
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~---g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~d~~g   95 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLLE---NEFPLHQAATLEDTKIVKILLFS----GLDDSQFDDKG   95 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCCT---TCCHHHHHTTSSSCHHHHHHHHT----TCCTTCCCTTS
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCC---CCCHHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCC
Confidence            44444 69999999999999999998886 478888774   89999999999999999999995    88999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCC-CChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316           86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEG-KTPLDHLSNGPGSAKLRELLLWHSEEQ  145 (445)
Q Consensus        86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g-~tpl~~~a~~~~~~~i~~~ll~~~~~~  145 (445)
                      .||||+|+..|+.+++++|+++|++++.++..| .||| |+|+..++.+++++|++++++.
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L-~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHH-HHHHHTTCHHHHHHHHTTSCTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHH-HHHHHcCCHHHHHHHHhCCCcc
Confidence            999999999999999999999999999999999 7999 7788889999999999998765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=1.8e-20  Score=175.32  Aligned_cols=135  Identities=21%  Similarity=0.229  Sum_probs=78.1

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.    |++++..
T Consensus        81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~  154 (285)
T 3d9h_A           81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQH----GASVQPE  154 (285)
T ss_dssp             TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCSSCS
T ss_pred             CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCHHHHHHHHHHC----CCCCCCC
Confidence            455555544 46666666666666666665554 3566666664 566666666666666666666663    4444432


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  145 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~  145 (445)
                      + .|.||||+|+..|+.+++++|++.|++++.+|..|.||| ++|+..++.+++++|++.+++.
T Consensus       155 ~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~  216 (285)
T 3d9h_A          155 S-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL-YLACENQQRACVKKLLESGADV  216 (285)
T ss_dssp             C-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHH-HHHHHTTCHHHHHHHHHTTCCT
T ss_pred             C-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHHCCCCC
Confidence            2 355555555555555555555555555555555555555 4455555555555555555444

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.83  E-value=5.8e-21  Score=175.91  Aligned_cols=142  Identities=21%  Similarity=0.188  Sum_probs=118.4

Q ss_pred             CCCchHhHHHH---HcCCHHHHHHHHhhC----------CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316           11 SAKPATIHGCA---QSGDLLAFQRLLREN----------PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE   77 (445)
Q Consensus        11 ~~~~t~L~~A~---~~g~~~~v~~ll~~~----------~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~   77 (445)
                      ..|.||||+|+   ..|+.++++.|+...          ...++..+. .|+||||+|+..|+.+++++|+++    |++
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~  118 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY-RGQTALHIAIERRCKHYVELLVEK----GAD  118 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE-ESBCHHHHHHHTTCHHHHHHHHHT----TCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc-CCCCHHHHHHHcCCHHHHHHHHhC----CCC
Confidence            45999999999   679999999998752          133444553 699999999999999999999995    889


Q ss_pred             ccccc--------------CCCCcHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCChhhhhhcCCCC---------
Q 013316           78 LEAQN--------------MYGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANEGKTPLDHLSNGPGS---------  131 (445)
Q Consensus        78 v~~~d--------------~~g~tpLh~A~~~g~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~a~~~~~---------  131 (445)
                      ++.++              .+|.||||+|+..|+.+++++|++   +|++++.+|..|+||| |+|+..++         
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpL-h~A~~~~~~~~~~~~~~  197 (260)
T 3jxi_A          119 VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL-HALVAIADNTRENTKFV  197 (260)
T ss_dssp             TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH-HHHHHHCCSSHHHHHHH
T ss_pred             cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHH-HHHHHhccCchhHHHHH
Confidence            99988              689999999999999999999999   9999999999999999 66664444         


Q ss_pred             hHHHHHHHhhhhhH-------HhhhhhhhhhhhH
Q 013316          132 AKLRELLLWHSEEQ-------RKRRALEACSETK  158 (445)
Q Consensus       132 ~~i~~~ll~~~~~~-------~~~~~~~~~~~~~  158 (445)
                      .+++++|+++|++.       ..++..+.++...
T Consensus       198 ~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~  231 (260)
T 3jxi_A          198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM  231 (260)
T ss_dssp             HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHHHHhCcccccccchhhcccCCCCCHHHH
Confidence            58999999999988       4455555555443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=4.1e-20  Score=172.82  Aligned_cols=149  Identities=19%  Similarity=0.225  Sum_probs=127.9

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+  .|+||||+|+..|+.+++++|+++    |++++.
T Consensus       113 ~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~  185 (285)
T 3d9h_A          113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPES--DLASPIHEAARRGHVECVNSLIAY----GGNIDH  185 (285)
T ss_dssp             HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCSC--TTSCHHHHHHHHTCHHHHHHHHHT----TCCTTC
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHH-CCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCC
Confidence            4677887766 69999999999999999987775 577777665  489999999999999999999995    788999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      +|..|.||||+|+..|+.+++++|++.|++++. +..|.||| ++|...++.+++++|++++++...++..+.++...+
T Consensus       186 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L-~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  262 (285)
T 3d9h_A          186 KISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPL-HAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV  262 (285)
T ss_dssp             CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence            999999999999999999999999999999985 88999999 788888999999999999988877766666655443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=8.3e-21  Score=173.39  Aligned_cols=109  Identities=28%  Similarity=0.297  Sum_probs=101.5

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc-CCCCcHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPL   89 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d-~~g~tpL   89 (445)
                      ..|.||||+||..|+.++++.|+.  +.++|..+. .|+||||+||..|+.+++++|+++    |++++.++ ..|.|||
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHT----TCCTTCCCSSSCCCHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHc----CCCCCcCCCCCCCCHH
Confidence            368899999999999999998886  789999997 799999999999999999999995    89999988 8899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN  127 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~  127 (445)
                      |+|+..|+.+++++|+++|++++.+|..|+||| ++|+
T Consensus       116 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l-~~A~  152 (244)
T 3ui2_A          116 HMAAGYVRPEVVEALVELGADIEVEDERGLTAL-ELAR  152 (244)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH-HHHH
Confidence            999999999999999999999999999999999 5554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.82  E-value=3e-20  Score=172.85  Aligned_cols=132  Identities=21%  Similarity=0.229  Sum_probs=123.4

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc----HHHHHHhhcCCCCCCcccccccCCCC
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMYGE   86 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~g~~v~~~d~~g~   86 (445)
                      ..|.||||+|+..|+.++++.|+...+.+++..+. .|+||||+|+..++    .+++++|++.    |++++.+|..|.
T Consensus       146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~----g~~~~~~~~~g~  220 (285)
T 1wdy_A          146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGK  220 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHT----TCCSSCCCTTSC
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHccccchHHHHHHHHHHc----CCCCCCcCCCCC
Confidence            46899999999999999999999877999999987 79999999999999    9999999995    889999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           87 TPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      ||||+|+..|+.+++++|++ .|++++.+|..|+||| ++|...++.+++++|+++|+++..+
T Consensus       221 t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l-~~A~~~~~~~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             cHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHH-HHHHHcCcHHHHHHHHHcCCCCCcc
Confidence            99999999999999999998 8999999999999999 7888889999999999999886544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.82  E-value=1.3e-20  Score=187.05  Aligned_cols=148  Identities=26%  Similarity=0.308  Sum_probs=103.8

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+
T Consensus       234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~  307 (437)
T 1n11_A          234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKH----GVMVDAT  307 (437)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhC----CccCCCC
Confidence            455555544 46677777777777777766554 4566666665 577777777777777777777763    6677777


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      |..|.||||+|+..|+.+++++|+++|++++.+|..|+||| |+|...++.+++++|+++|+++..++..+.++..
T Consensus       308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~  382 (437)
T 1n11_A          308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA  382 (437)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            77777788887777777788877777777777777778887 6666677777778777777776666555544433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.82  E-value=1.1e-20  Score=164.80  Aligned_cols=126  Identities=13%  Similarity=0.004  Sum_probs=111.8

Q ss_pred             CCchHhHHHHHcCCHH----HHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc------HHHHHHhhcCCCCCCcccccc
Q 013316           12 AKPATIHGCAQSGDLL----AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK------AEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~----~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~------~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .|+||||+|+..|+.+    +++.|+ ..|+++|.++. .|+||||+|+..++      .+++++|+++    |+++|.+
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~-~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~----Gadin~~  110 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEK----GADITAL  110 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCT-TCCCTHHHHHHHCTTCHHHHHHHHHHHHHT----TCCSSSC
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCC-CCCcHHHHHHHcCCcchhhHHHHHHHHHHC----CCCCCcc
Confidence            5999999999999864    677666 57999999997 79999999999987      6889999995    9999999


Q ss_pred             cCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           82 NMYGE-TPLHMAAKNG-----CNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        82 d~~g~-tpLh~A~~~g-----~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      |..|. ||||+|+..+     +.+++++|++ +|++++.+|..|+||| ++|...++.+++++|.....+
T Consensus       111 d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL-~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHHHHHH
Confidence            99999 9999999844     4569999999 9999999999999999 788889999999999876544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.82  E-value=3.1e-20  Score=173.61  Aligned_cols=145  Identities=14%  Similarity=0.006  Sum_probs=127.7

Q ss_pred             CCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      +.|++++.. .|.||||+||..|+.++++.|+. .|++++..+. .|+||||+|+..|+.+++++|+++    |++++.+
T Consensus        52 ~~g~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~  124 (285)
T 3kea_A           52 NAGALKNLL-ENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKK----NWRLMFY  124 (285)
T ss_dssp             HTTGGGSCC-TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGC
T ss_pred             hCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhc----CCCCCcc
Confidence            467888877 58999999999999999998875 5889999987 799999999999999999999995    8999999


Q ss_pred             cCCC-CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316           82 NMYG-ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS  155 (445)
Q Consensus        82 d~~g-~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~  155 (445)
                      +..| .||||+|+..|+.+++++|+++|+++... ..|.||| |+|+..++.+++++|+++++++..++..+.++
T Consensus       125 ~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~  197 (285)
T 3kea_A          125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCI-HITIKNGHVDMMILLLDYMTSTNTNNSLLFIP  197 (285)
T ss_dssp             SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHH-HHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHH-HHHHHcChHHHHHHHHHcCCCCCcccCCCCCh
Confidence            9999 89999999999999999999999887332 2899999 78888899999999999999988777655554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.82  E-value=3.9e-20  Score=171.77  Aligned_cols=143  Identities=20%  Similarity=0.184  Sum_probs=118.6

Q ss_pred             CCCCchHhHHHHHc---CCHHHHHHHHhhCC----------CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCc
Q 013316           10 RSAKPATIHGCAQS---GDLLAFQRLLRENP----------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV   76 (445)
Q Consensus        10 ~~~~~t~L~~A~~~---g~~~~v~~ll~~~~----------~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~   76 (445)
                      ...|.||||+||..   |+.++++.|+....          ......+. .|+||||+|+..|+.+++++|+++    |+
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~----ga  125 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY-KGQTALHIAIERRNMTLVTLLVEN----GA  125 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHT----TC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccC-CCCCHHHHHHHcCCHHHHHHHHHC----CC
Confidence            45799999999987   99999999887521          11222444 699999999999999999999995    88


Q ss_pred             ccccccC--------------CCCcHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCChhhhhhcCCCC--------
Q 013316           77 ELEAQNM--------------YGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANEGKTPLDHLSNGPGS--------  131 (445)
Q Consensus        77 ~v~~~d~--------------~g~tpLh~A~~~g~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~a~~~~~--------  131 (445)
                      +++.++.              .|.||||+|+..|+.+++++|++   +|++++.+|..|+||| |+|+..++        
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpL-h~A~~~~~~~~~~~~~  204 (273)
T 2pnn_A          126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL-HALVEVADNTVDNTKF  204 (273)
T ss_dssp             CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH-HHHHHHCCSCHHHHHH
T ss_pred             CcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHH-HHHHHccCcchhHHHH
Confidence            9998887              79999999999999999999999   9999999999999999 66666555        


Q ss_pred             -hHHHHHHHhhhhhHHh-------hhhhhhhhhhH
Q 013316          132 -AKLRELLLWHSEEQRK-------RRALEACSETK  158 (445)
Q Consensus       132 -~~i~~~ll~~~~~~~~-------~~~~~~~~~~~  158 (445)
                       .+++++|+.++++.+.       ++..+.++...
T Consensus       205 ~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          205 VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence             6899999999998753       44445455443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.82  E-value=5.5e-20  Score=165.68  Aligned_cols=145  Identities=24%  Similarity=0.236  Sum_probs=122.7

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhC-CCCcCC-CCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCc
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLREN-PSLLNE-RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET   87 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~-~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~t   87 (445)
                      ...|.||||+|+..|+.++++.|+... ..+++. .+. .|+||||+|+..|+.+++++|++++.  +.+++.++..|.|
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~~~~~~g~t  109 (228)
T 2dzn_A           33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVT  109 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-TSCCHHHHHHHHCCHHHHHHHHSSSS--CCCTTCCCTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHhCCC--CcccccCCcCCCC
Confidence            447999999999999999999888653 155555 554 79999999999999999999999621  2788999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh-hhHHhhhhhhhhhhhH
Q 013316           88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS-EEQRKRRALEACSETK  158 (445)
Q Consensus        88 pLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~-~~~~~~~~~~~~~~~~  158 (445)
                      |||+|+..++.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++.+ .+...++..+.++...
T Consensus       110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~  180 (228)
T 2dzn_A          110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL-HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  180 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHH
Confidence            99999999999999999999999999999999999 7788889999999999999 7766665555555443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.82  E-value=1.9e-20  Score=174.29  Aligned_cols=134  Identities=23%  Similarity=0.304  Sum_probs=119.9

Q ss_pred             CCcc-CccCCC-CCchHhHHHH-----HcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCC
Q 013316            2 QKNQ-DRRSRS-AKPATIHGCA-----QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND   74 (445)
Q Consensus         2 ~~~~-~~~~~~-~~~t~L~~A~-----~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~   74 (445)
                      +.|+ +++..+ .|.||||+|+     ..++.++++.++.. +..++..+. .|+||||+|+..|+.+++++|++.    
T Consensus       132 ~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~----  205 (276)
T 4hbd_A          132 DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKASQ-AGQTALMLAVSHGRVDVVKALLAC----  205 (276)
T ss_dssp             HTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHT----
T ss_pred             HCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhC----
Confidence            3565 666666 6999999999     66899999988865 566777775 799999999999999999999995    


Q ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        75 g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      |+++|.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||| ++|...++.+++++|+++.
T Consensus       206 gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL-~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          206 EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL-MVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHH-HHHHHcCCHHHHHHHHhcc
Confidence            89999999999999999999999999999999 8999999999999999 7888889999999998764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.82  E-value=4e-20  Score=179.07  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=120.8

Q ss_pred             CCchHhHHHHHcC--CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc-----cccccCC
Q 013316           12 AKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE-----LEAQNMY   84 (445)
Q Consensus        12 ~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~-----v~~~d~~   84 (445)
                      .|.||||+||..|  +.++++.|+.. +++++..+. .|+||||+|+..|+.+++++|+++    |++     ++.+|..
T Consensus       137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~~~~~  210 (364)
T 3ljn_A          137 KGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDK-ADETPLMRAMEFRNREALDLMMDT----VPSKSSLRLDYANKQ  210 (364)
T ss_dssp             SCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----CSCSSSCCTTCCCTT
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHhc----ccccccccccccCCC
Confidence            6899999999999  99999988865 899999997 799999999999999999999985    555     9999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        85 g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|+..++.+++++|+.++++....
T Consensus       211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~~~~~~~~  273 (364)
T 3ljn_A          211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQKTDVFLIQ  273 (364)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHcCCchhhh
Confidence            99999999999999999999999999999999999999 8888899999999999998876443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.82  E-value=5.3e-20  Score=176.65  Aligned_cols=138  Identities=30%  Similarity=0.376  Sum_probs=126.5

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .+.++||.||..|+.+.++.++...+.+++..+. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   97 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDG-RKSTPLHLAAGYNRVRIVQLLLQH----GADVHAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSST-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCcHHHH
Confidence            4789999999999999999999988999999987 799999999999999999999995    88999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS  155 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~  155 (445)
                      |+..|+.+++++|+++|++++.+|..|.||| ++|+..++.+++++|+++++++...+..+.++
T Consensus        98 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~  160 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPL-HEAASKNRVEVCSLLLSHGADPTLVNCHGKSA  160 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence            9999999999999999999999999999999 78888899999999999998876655444333

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.3e-19  Score=139.18  Aligned_cols=93  Identities=38%  Similarity=0.555  Sum_probs=79.4

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|+||||+||..|+.++++.|+. .+.++|.++. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHH
Confidence            37889999999999998887775 5788888886 789999999999999999999985    78888889999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCC
Q 013316           92 AAKNGCNEAAKLLLAHGAF  110 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~  110 (445)
                      |+..|+.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999988875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.81  E-value=1.2e-20  Score=171.67  Aligned_cols=134  Identities=16%  Similarity=0.109  Sum_probs=93.3

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..|.||||.|+..|+.+.++.++. .|.+++...  .|.||||+|+..|+.+++++|++.    |++++.+|..|.||||
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~~--~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~   75 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFNP--LPLALLLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALH   75 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTST----TSSCCCCCTTSCCHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhc-cCCCcccCc--hhhHHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHH
Confidence            468999999999999999998775 678888653  589999999999999999999985    8899999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE  152 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~  152 (445)
                      +|+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++++++....+..+
T Consensus        76 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  136 (239)
T 1ycs_B           76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL-HCAASCNNVQVCKFLVESGAAVFAMTYSD  136 (239)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCcceecCCC
Confidence            99999999999999999999999999999999 78888999999999999999877665433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.81  E-value=6.1e-20  Score=172.54  Aligned_cols=124  Identities=27%  Similarity=0.333  Sum_probs=109.3

Q ss_pred             CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcH
Q 013316            9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP   88 (445)
Q Consensus         9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tp   88 (445)
                      ....+.||||+||..|+.++++.|+.. +.++|..+. .|+||||+||..|+.+++++|+++    |++++.+|..|.||
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tp  109 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANV-DGLTALHQACIDDNVDMVKFLVEN----GANINQPDNEGWIP  109 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCcH
Confidence            344678999999999999999998865 788999987 799999999999999999999995    88999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHH
Q 013316           89 LHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL  139 (445)
Q Consensus        89 Lh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll  139 (445)
                      ||+|+..|+.+++++|+++|++++.++..|.||| ++|...+..++++.++
T Consensus       110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL-DIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHCCSHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHhcchHHHHHHHH
Confidence            9999999999999999999999999998888888 6666666666655544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.81  E-value=2.6e-19  Score=178.37  Aligned_cols=158  Identities=20%  Similarity=0.292  Sum_probs=115.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~  243 (445)
                      .++.++|++..++.+.+.+.                .....++||+||||||||++|+++|+.+....   .+...+|+.
T Consensus       178 ~ld~iiGr~~~i~~l~~~l~----------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~  241 (468)
T 3pxg_A          178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT  241 (468)
T ss_dssp             CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred             CCCCccCcHHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence            35679999999888877543                23567899999999999999999999986422   233557888


Q ss_pred             eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhH
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM  320 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~  320 (445)
                      ++++   +.|.|..+..+..+|..+.   ++|||||     .          ..++++.|+..++.+.+.+|++|+..++
T Consensus       242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L~~g~v~vI~at~~~e~  303 (468)
T 3pxg_A          242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLARGELQCIGATTLDEY  303 (468)
T ss_dssp             C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTTSSSCEEEEECCTTTT
T ss_pred             eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhhcCCCEEEEecCCHHHH
Confidence            8887   6677877777777777654   7999999     1          1156788999999999999999999987


Q ss_pred             HHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          321 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       321 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      ...+..+|+|++||. .|.|+.|+.+++.+|++.++.+.
T Consensus       304 ~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~  341 (468)
T 3pxg_A          304 RKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRY  341 (468)
T ss_dssp             HHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred             HHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHH
Confidence            776777999999995 69999999999999999887764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.81  E-value=8.4e-20  Score=174.83  Aligned_cols=134  Identities=21%  Similarity=0.226  Sum_probs=121.1

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc----HHHHHHhhcCCCCCCcccccccCCCCc
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMYGET   87 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~g~~v~~~d~~g~t   87 (445)
                      .|.||||+||..|+.++++.||...|+++|..+. .|.|++|+++..++    ..++++|+++    |+++|.+|..|.|
T Consensus       167 ~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~----gad~n~~d~~g~t  241 (337)
T 4g8k_A          167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKT  241 (337)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHT----TCCTTCCCGGGCC
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHC----CCCCCCcCCCCCC
Confidence            5899999999999999999999888999999997 79999998775543    4688999995    8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhh
Q 013316           88 PLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL  151 (445)
Q Consensus        88 pLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~  151 (445)
                      |||+|+..|+.+++++|+. .|++++.+|.+|+||| |+|+..++.+++++|+++|++++.++++
T Consensus       242 ~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GAd~n~~~~L  305 (337)
T 4g8k_A          242 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCGDLV  305 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHTTSCSSTTCCHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCCHH
Confidence            9999999999999999997 5899999999999999 8888899999999999999988766543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.80  E-value=1.2e-19  Score=176.32  Aligned_cols=154  Identities=18%  Similarity=0.163  Sum_probs=132.2

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+||..|+.++++.|+. .|++++..+. .|.||||+|+..|+.+++++|++.+. .+++++.
T Consensus       154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~  230 (373)
T 2fo1_E          154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTK-LKGDIEE  230 (373)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHH-HHHTTSC
T ss_pred             hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCc-cccChhh
Confidence            5688888876 69999999999999999998875 6899999987 79999999999999999999998510 0178899


Q ss_pred             ccCCCCcHHHHHHHcC---CHHHHHHHHhcCCCCcc--------cccCCCChhhhhhcCCCChHHHHHHHhhh-hhHHhh
Q 013316           81 QNMYGETPLHMAAKNG---CNEAAKLLLAHGAFIEA--------KANEGKTPLDHLSNGPGSAKLRELLLWHS-EEQRKR  148 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g---~~~~~~~Ll~~ga~~~~--------~~~~g~tpl~~~a~~~~~~~i~~~ll~~~-~~~~~~  148 (445)
                      .|..|.||||+|+..+   +.+++++|+++|++++.        +|..|.||| |+|+..++.+++++|+..+ .+.+.+
T Consensus       231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L-h~A~~~g~~~~v~~Ll~~~~~~~n~~  309 (373)
T 2fo1_E          231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL-HYAAQVSNMPIVKYLVGEKGSNKDKQ  309 (373)
T ss_dssp             CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH-HHHHSSCCHHHHHHHHHHSCCCTTCC
T ss_pred             cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH-HHHHHhCCHHHHHHHHHhcCCCccCc
Confidence            9999999999999998   89999999999999986        677999999 8888899999999999876 777666


Q ss_pred             hhhhhhhhhHH
Q 013316          149 RALEACSETKA  159 (445)
Q Consensus       149 ~~~~~~~~~~a  159 (445)
                      +..+.++...+
T Consensus       310 d~~g~TpL~~A  320 (373)
T 2fo1_E          310 DEDGKTPIMLA  320 (373)
T ss_dssp             CTTCCCHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            65555554443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.80  E-value=5.2e-19  Score=165.31  Aligned_cols=239  Identities=10%  Similarity=0.028  Sum_probs=147.4

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC---CCCCCeEEeecc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRT  247 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~---~~~~~~~~~~~~  247 (445)
                      |.|.++-...|...+....            ....+.+++|+||||||||++++.+++.+.....   +..-.++.++|.
T Consensus        22 L~~Re~E~~~i~~~L~~~i------------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~   89 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSL------------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL   89 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred             cCCHHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence            5666655555555443331            1457889999999999999999999999975321   112357888887


Q ss_pred             cccc----------cccCC------chhHHHHHHHHc-----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc--
Q 013316          248 DLVG----------EFVGH------TGPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--  304 (445)
Q Consensus       248 ~l~~----------~~~g~------~~~~~~~~~~~a-----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~--  304 (445)
                      .+.+          ++.|+      +...+.+.|...     ...|+||||||.+.  .+        +++..|+...  
T Consensus        90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q--------~~L~~l~~~~~~  159 (318)
T 3te6_A           90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE--------KILQYFEKWISS  159 (318)
T ss_dssp             CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT--------HHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc--------hHHHHHHhcccc
Confidence            6432          23333      455677778753     24799999999998  22        5555555543  


Q ss_pred             cCCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhccccc-c---cc--------------
Q 013316          305 DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTED-S---LL--------------  365 (445)
Q Consensus       305 ~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~-~---~~--------------  365 (445)
                      +..++++|+.++..+... ...++++++||. ..|.|++|+.+|+.+|+++.+...... +   +.              
T Consensus       160 ~~s~~~vI~i~n~~d~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~  238 (318)
T 3te6_A          160 KNSKLSIICVGGHNVTIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQ  238 (318)
T ss_dssp             SSCCEEEEEECCSSCCCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC----
T ss_pred             cCCcEEEEEEecCcccch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence            456788887665432211 112688899996 689999999999999999999875321 0   00              


Q ss_pred             -----ccc-ccCCcccHHHHHHHHHH---HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316          366 -----YGF-KLHSSCSMDAIAALIEK---ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG  436 (445)
Q Consensus       366 -----~~~-~~~~~~~~~~l~~~~~~---~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a  436 (445)
                           .++ .....++++++. ++++   ..+||+|.      .-+++++|...............++...||.+.+..+
T Consensus       239 ~~~~~~~~~~~~~~i~~~ai~-~~A~~vA~~~GD~R~------Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~  311 (318)
T 3te6_A          239 NQKIPDNVIVINHKINNKITQ-LIAKNVANVSGSTEK------AFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRY  311 (318)
T ss_dssp             ----CTTEEEECEECCHHHHH-HHHHHHHHHHCSHHH------HHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHH
T ss_pred             cccccccccccccccCHHHHH-HHHHHHHhhCChHHH------HHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHH
Confidence                 000 112246777877 5444   34455554      4455555554433322111111245567777777766


Q ss_pred             HHH
Q 013316          437 LKL  439 (445)
Q Consensus       437 ~~~  439 (445)
                      +.+
T Consensus       312 ~~~  314 (318)
T 3te6_A          312 FSE  314 (318)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.80  E-value=2.1e-19  Score=178.32  Aligned_cols=150  Identities=27%  Similarity=0.376  Sum_probs=118.9

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      ++|++++... .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|++.    +++++.
T Consensus       200 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~  273 (437)
T 1n11_A          200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESV-QGVTPLHLAAQEGHAEMVALLLSK----QANGNL  273 (437)
T ss_dssp             GGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTT----TCCTTC
T ss_pred             hCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhc----CCCCCC
Confidence            3455665544 57788888888888888877664 5677777775 688888888888888888888884    778888


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                      .+..|.||||+|+..|+.+++++|+++|++++.++..|+||| |+|+..++.+++++|++++++++.++..+.++...
T Consensus       274 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~  350 (437)
T 1n11_A          274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ  350 (437)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHH-HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHH-HHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            888888888888888888888888888888888888889998 77777888888898888888877766555555443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.80  E-value=2.2e-18  Score=182.59  Aligned_cols=243  Identities=16%  Similarity=0.202  Sum_probs=170.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC---CCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~---~~~~~~~~  243 (445)
                      .|+.++|.++.++++.+.+.                .....+++|+||||||||++|+++++.+.....   +....++.
T Consensus       184 ~~d~~iGr~~~i~~l~~~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~  247 (758)
T 1r6b_X          184 GIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS  247 (758)
T ss_dssp             CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             CCCCccCCHHHHHHHHHHHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence            46679999988877776432                235678999999999999999999999865322   22346777


Q ss_pred             eeccccc--ccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch
Q 013316          244 VQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  318 (445)
Q Consensus       244 ~~~~~l~--~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~  318 (445)
                      ++.+.+.  ..+.|..+..+..+|+.+.   ++||||||+|.+.+.++..  ....++.+.|...++.+.+.+|++++..
T Consensus       248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~~~l~~~~~~~I~at~~~  325 (758)
T 1r6b_X          248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIGSTTYQ  325 (758)
T ss_dssp             CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred             EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence            7777765  3577888888888887664   5999999999998765432  1234667778888888999999999988


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  398 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r  398 (445)
                      .+...+..||+|.+||. .+.|+.|+.+++.+|++..+......       ....++++++..+. ..+.+.........
T Consensus       326 ~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~-------~~v~~~~~al~~~~-~~s~~~i~~~~lp~  396 (758)
T 1r6b_X          326 EFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAH-------HDVRYTAKAVRAAV-ELAVKYINDRHLPD  396 (758)
T ss_dssp             HHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHH-------HTCCCCHHHHHHHH-HHHHHHCTTSCTTH
T ss_pred             HHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHH-HHhhhhcccccCch
Confidence            77666667899999996 79999999999999999877653211       12345566666444 44444444444445


Q ss_pred             hhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          399 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       399 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      .+..+++++........     .......|+.+||.+++..+.
T Consensus       397 ~~i~lld~a~~~~~~~~-----~~~~~~~v~~~di~~~~~~~~  434 (758)
T 1r6b_X          397 KAIDVIDEAGARARLMP-----VSKRKKTVNVADIESVVARIA  434 (758)
T ss_dssp             HHHHHHHHHHHHHHHSS-----SCCCCCSCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhccc-----ccccCCccCHHHHHHHHHHhc
Confidence            56777777644332211     011234689999998887654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=1.5e-19  Score=138.81  Aligned_cols=92  Identities=43%  Similarity=0.630  Sum_probs=86.2

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS  126 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a  126 (445)
                      +|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||| ++|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l-~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHH
Confidence            389999999999999999999995    889999999999999999999999999999999999999999999999 788


Q ss_pred             cCCCChHHHHHHHhhhh
Q 013316          127 NGPGSAKLRELLLWHSE  143 (445)
Q Consensus       127 ~~~~~~~i~~~ll~~~~  143 (445)
                      ...++.+++++|+++|+
T Consensus        76 ~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           76 ARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHTTCHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHcCC
Confidence            88899999999998875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.79  E-value=3.6e-19  Score=165.53  Aligned_cols=147  Identities=23%  Similarity=0.225  Sum_probs=96.0

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      ++|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.    |++++.
T Consensus        60 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~  133 (285)
T 1wdy_A           60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKR----GANVNL  133 (285)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHT----TCCTTC
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHh----CCCccc
Confidence            4566666554 57777777777777777776664 4667777665 577777777777777777777774    555555


Q ss_pred             c----------cCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCcccccCCCChhhhhhcCCCC----hHHHHHHHhhhhhH
Q 013316           81 Q----------NMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANEGKTPLDHLSNGPGS----AKLRELLLWHSEEQ  145 (445)
Q Consensus        81 ~----------d~~g~tpLh~A~~~g~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~~a~~~~~----~~i~~~ll~~~~~~  145 (445)
                      .          +..|.||||+|+..|+.+++++|++. |++++.++..|.||| +.+...+.    .+++++|++++.+.
T Consensus       134 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~  212 (285)
T 1wdy_A          134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADV  212 (285)
T ss_dssp             CCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred             ccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCC
Confidence            4          56667777777777777777777765 777777777777776 44444444    56666666666655


Q ss_pred             Hhhhhhhhhh
Q 013316          146 RKRRALEACS  155 (445)
Q Consensus       146 ~~~~~~~~~~  155 (445)
                      ..++..+.++
T Consensus       213 ~~~~~~g~t~  222 (285)
T 1wdy_A          213 NVRGERGKTP  222 (285)
T ss_dssp             SCCCTTSCCH
T ss_pred             CCcCCCCCcH
Confidence            5444333333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=4.3e-19  Score=165.10  Aligned_cols=124  Identities=23%  Similarity=0.270  Sum_probs=112.3

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCCCCcC------CCCCCCCChHHHHHHhC---CcHHHHHHhhcCCCCCCcccccccCC
Q 013316           14 PATIHGCAQSGDLLAFQRLLRENPSLLN------ERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMY   84 (445)
Q Consensus        14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~------~~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~g~~v~~~d~~   84 (445)
                      .++|+.|+..|+.+.+..++.. +.+++      ..+. .|+||||+|+..   |+.+++++|+++    |+++|.+|..
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~-~g~t~Lh~A~~~~~~~~~~~v~~Ll~~----ga~in~~d~~  204 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQN----SGNLDKQTGK  204 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHH----CSCTTCCCTT
T ss_pred             hhhhhhHhhhcccHHHHHHHHh-hcchhhhcccccccc-CCCCcchHHHHhcccchHHHHHHHHHC----CCCccccCCC
Confidence            4689999999999999988764 56643      3455 699999999999   899999999995    8999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        85 g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|...++.+++++|++++++
T Consensus       205 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL-DIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999 788888999999999988875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.8e-19  Score=144.20  Aligned_cols=107  Identities=34%  Similarity=0.439  Sum_probs=96.4

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      ...|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..++.+++++|+++    |++++.+|..|.|||
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~d~~g~tpl   79 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAK----GADVNARSKDGNTPE   79 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCS-SSCCTTHHHHTTTCHHHHHHHTTT----TCCTTCCCTTCCCTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHc----CCCCcccCCCCCCHH
Confidence            4579999999999999999987775 5788999986 799999999999999999999995    889999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL  122 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl  122 (445)
                      |+|+..++.+++++|+++|++++.++..|.+|-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999999999999999999999999999999885

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.79  E-value=4e-19  Score=167.20  Aligned_cols=125  Identities=22%  Similarity=0.262  Sum_probs=115.1

Q ss_pred             CchHhHHHHHcCCHHHHHHHHhhCCCCcCC------CCCCCCChHHHHHHhC---CcHHHHHHhhcCCCCCCcccccccC
Q 013316           13 KPATIHGCAQSGDLLAFQRLLRENPSLLNE------RNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNM   83 (445)
Q Consensus        13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~------~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~g~~v~~~d~   83 (445)
                      ..++||.|+..|+.+.++.++ ..+.+++.      .+. .|+||||+|+..   ++.+++++|+++    |+++|.+|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~----gadvn~~d~  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQA-PEELVLHLAVKVANQASLPLVDFIIQN----GGHLDAKAA  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCS-CEECHHHHHHHTCCTTTHHHHHHHHHH----SSCTTCCCT
T ss_pred             hHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCC-CCccHHHHHHHhcccCcHHHHHHHHhc----CCCCCCCCC
Confidence            567899999999999999888 46788887      454 799999999997   899999999995    899999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|...++.+++++|+.++++
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL-~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL-DIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999 788888999999999998876

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.79  E-value=6.2e-20  Score=178.41  Aligned_cols=151  Identities=19%  Similarity=0.233  Sum_probs=126.4

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCC--CCcCCCCCCCCChHHHHHHhCC---cHHHHHHhhcCCCCCC
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPGNDK   75 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~g   75 (445)
                      ++|++++..+ .|.||||+||..|+.++++.|+....  .+++..+. .|+||||+|+..+   +.+++++|++.    |
T Consensus       187 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll~~----g  261 (373)
T 2fo1_E          187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEK----G  261 (373)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHH----T
T ss_pred             HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC-CCCCHHHHHHHhCCcchHHHHHHHHHC----C
Confidence            5678888766 69999999999999999988875421  67888886 7999999999988   89999999985    6


Q ss_pred             ccccc--------ccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316           76 VELEA--------QNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  146 (445)
Q Consensus        76 ~~v~~--------~d~~g~tpLh~A~~~g~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~  146 (445)
                      ++++.        .|..|.||||+|+..|+.+++++|++.| ++++.+|..|+||| |+|+..++.+++++|++++++..
T Consensus       262 ~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL-~~A~~~g~~~iv~~Ll~~gad~~  340 (373)
T 2fo1_E          262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI-MLAAQEGRIEVVMYLIQQGASVE  340 (373)
T ss_dssp             CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCcc
Confidence            67765        5678999999999999999999999765 99999999999999 77888899999999999998877


Q ss_pred             hhhhhhhhhhhH
Q 013316          147 KRRALEACSETK  158 (445)
Q Consensus       147 ~~~~~~~~~~~~  158 (445)
                      .++..+.++...
T Consensus       341 ~~d~~g~t~l~~  352 (373)
T 2fo1_E          341 AVDATDHTARQL  352 (373)
T ss_dssp             CCCSSSCCHHHH
T ss_pred             CCCCCCCCHHHH
Confidence            766555555443

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.79  E-value=2.5e-18  Score=159.57  Aligned_cols=198  Identities=12%  Similarity=0.169  Sum_probs=129.7

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      .++|+++..+.+...........  ..    ....++.++||+||||||||++|+++|+.++.       +|+.+++++ 
T Consensus        34 ~~i~~~~~~~~i~~~~~~l~~~l--~~----~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~-------~~~~i~~~~-   99 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGELLVQQT--KN----SDRTPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPD-   99 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHH--HH----CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGG-
T ss_pred             CCCCccHHHHHHHHHHHHHHHHH--hc----cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeCHH-
Confidence            36777776666655211111000  00    12346678999999999999999999999765       888888875 


Q ss_pred             cccccCCch----hHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCc
Q 013316          250 VGEFVGHTG----PKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS  317 (445)
Q Consensus       250 ~~~~~g~~~----~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~  317 (445)
                        .++|...    ..++.+|..+   .++||||||||.+.+.+..+ .......++.|...++.     ..+++|++++.
T Consensus       100 --~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~  176 (272)
T 1d2n_A          100 --KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR  176 (272)
T ss_dssp             --GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred             --HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence              4555543    3456677654   46999999999997654322 22334566667776653     34566666665


Q ss_pred             hhHHHHHhhCc-ccccccccceeCCCCCH-HHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          318 EPMKRVIASNE-GFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       318 ~~~~~~~~~~~-~l~~R~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ....     ++ .+++||+..+.||+++. +++..++...                ..++++.+..+.. .+.+ ..+++
T Consensus       177 ~~~l-----~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~----------------~~~~~~~~~~l~~-~~~g-~~~~g  233 (272)
T 1d2n_A          177 KDVL-----QEMEMLNAFSTTIHVPNIATGEQLLEALELL----------------GNFKDKERTTIAQ-QVKG-KKVWI  233 (272)
T ss_dssp             HHHH-----HHTTCTTTSSEEEECCCEEEHHHHHHHHHHH----------------TCSCHHHHHHHHH-HHTT-SEEEE
T ss_pred             hhhc-----chhhhhcccceEEcCCCccHHHHHHHHHHhc----------------CCCCHHHHHHHHH-HhcC-CCccc
Confidence            5432     34 67889999999999986 6766666541                1234556554443 3322 33578


Q ss_pred             CchhhHHHHHHH
Q 013316          396 NGGLVDPMLVNA  407 (445)
Q Consensus       396 n~r~l~~~~~~~  407 (445)
                      |.|++.++++.+
T Consensus       234 ~ir~l~~~l~~a  245 (272)
T 1d2n_A          234 GIKKLLMLIEMS  245 (272)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            999999999988

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.79  E-value=7.6e-18  Score=150.98  Aligned_cols=202  Identities=23%  Similarity=0.236  Sum_probs=137.9

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      +++++|.+..++.+.+++..                ....+++|+||||||||++|+.+++.+...+.  ...++.++++
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~~   77 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNAS   77 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHHT----------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG--GGGEEEEETT
T ss_pred             HHHHcCcHHHHHHHHHHHhC----------------CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc--ccceEEeccc
Confidence            56799999998888876542                23446999999999999999999998754211  1257777765


Q ss_pred             cccccccCCchhHHHHHHH-----HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhH
Q 013316          248 DLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPM  320 (445)
Q Consensus       248 ~l~~~~~g~~~~~~~~~~~-----~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~  320 (445)
                      ...+..  .....+.....     ...+++|||||+|.+.+           ..++.|+..++.  ....+|++++... 
T Consensus        78 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~~~~~~i~~~~~~~-  143 (226)
T 2chg_A           78 DERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYSKSCRFILSCNYVS-  143 (226)
T ss_dssp             CTTCHH--HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG-
T ss_pred             cccChH--HHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhcCCCCeEEEEeCChh-
Confidence            532210  00011111221     13568999999999875           445666666653  4566666655432 


Q ss_pred             HHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316          321 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV  400 (445)
Q Consensus       321 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l  400 (445)
                          ..++++.+||. .+.|++|+.+++.+++..++.+..           ..++++++..+. ..+      .||.|.+
T Consensus       144 ----~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~-~~~------~g~~r~l  200 (226)
T 2chg_A          144 ----RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALI-YIS------GGDFRKA  200 (226)
T ss_dssp             ----GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHH-HHH------TTCHHHH
T ss_pred             ----hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHc------CCCHHHH
Confidence                23788999995 899999999999999998876531           235566666444 555      7889999


Q ss_pred             HHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          401 DPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      .++++.+....              ..|+.+|+.++++
T Consensus       201 ~~~l~~~~~~~--------------~~I~~~~v~~~~~  224 (226)
T 2chg_A          201 INALQGAAAIG--------------EVVDADTIYQITA  224 (226)
T ss_dssp             HHHHHHHHHTC--------------SCBCHHHHHHHHH
T ss_pred             HHHHHHHHhcC--------------ceecHHHHHHHhc
Confidence            99998873221              2799999998876

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.79  E-value=5.1e-19  Score=160.27  Aligned_cols=141  Identities=18%  Similarity=0.228  Sum_probs=77.9

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      .|++++..+ .|.||||+|+..|+.++++.|+.. +.+++......|+||||+|+..|+.+++++|++.    |++++.+
T Consensus        31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~  105 (240)
T 3eu9_A           31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY----GADPSLI  105 (240)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT----TCCTTCC
T ss_pred             cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc----CCCCccc
Confidence            344444433 455666666666666666555543 3333333322355666666666666666666653    5555555


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|.|||++++......+++++|+..+.+....
T Consensus       106 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~  172 (240)
T 3eu9_A          106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG  172 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCC
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchh
Confidence            6666666666666666666666666666666666666666633332344455566665555554433

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.78  E-value=9.1e-19  Score=168.59  Aligned_cols=232  Identities=17%  Similarity=0.154  Sum_probs=140.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC--------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT--------  238 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~--------  238 (445)
                      .|++++|++.++..+....  .              .....++||+||||||||++|+++|+.+........        
T Consensus        22 ~f~~i~G~~~~~~~l~~~~--~--------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~   85 (350)
T 1g8p_A           22 PFSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV   85 (350)
T ss_dssp             CGGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred             CchhccChHHHHHHHHHHh--h--------------CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence            4677999998766543211  1              123457999999999999999999998753100000        


Q ss_pred             ------------------CCeEEeecccccccccCCch--hH--------HHHHHHHccCcEEEEcCccccccCCCCCCc
Q 013316          239 ------------------DRVTEVQRTDLVGEFVGHTG--PK--------TRRRIKEAEGGILFVDEAYRLIPMQKADDK  290 (445)
Q Consensus       239 ------------------~~~~~~~~~~l~~~~~g~~~--~~--------~~~~~~~a~~~il~lDEid~l~~~~~~~~~  290 (445)
                                        .+++.+........++|...  ..        ....+..+.++||||||||.+.+       
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~-------  158 (350)
T 1g8p_A           86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED-------  158 (350)
T ss_dssp             GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-------
T ss_pred             ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-------
Confidence                              12222222211222333210  00        01234455689999999999876       


Q ss_pred             hhHHHHHHHHHhhccCC---------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCC-CHHHHHHHHHH
Q 013316          291 DYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF-NSEELAKILHI  354 (445)
Q Consensus       291 ~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~-~~~~~~~il~~  354 (445)
                          +.++.|+..++.+               ++++|+++++...    ..+++|++||+..+.+++| +.+++.+|+++
T Consensus       159 ----~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~----~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~  230 (350)
T 1g8p_A          159 ----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG----DLRPQLLDRFGLSVEVLSPRDVETRVEVIRR  230 (350)
T ss_dssp             ----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC----CCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence                6677888877653               5788888775331    2379999999888999999 57777788877


Q ss_pred             HHhcccc-----------------ccc-ccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhc
Q 013316          355 KMNNQTE-----------------DSL-LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS  416 (445)
Q Consensus       355 ~l~~~~~-----------------~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~  416 (445)
                      .+.....                 ... .........++++++..+....|++..   .+.|.+.++++.+.......  
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~---~~~R~~~~ll~~a~~~A~~~--  305 (350)
T 1g8p_A          231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS---DGLRGELTLLRSARALAALE--  305 (350)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS---CSHHHHHHHHHHHHHHHHHT--
T ss_pred             HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC---CCccHHHHHHHHHHHHHHHc--
Confidence            4321100                 000 000001125677888877777663211   13588888888774432221  


Q ss_pred             cCCCChhhhhhccHHHHHHHHHHHH
Q 013316          417 FDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       417 ~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                             +...|+.+|+.+++..+.
T Consensus       306 -------~~~~v~~~~v~~a~~~~l  323 (350)
T 1g8p_A          306 -------GATAVGRDHLKRVATMAL  323 (350)
T ss_dssp             -------TCSBCCHHHHHHHHHHHH
T ss_pred             -------CCCcCCHHHHHHHHHHHH
Confidence                   223699999999887653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=6.4e-19  Score=169.77  Aligned_cols=125  Identities=24%  Similarity=0.256  Sum_probs=115.2

Q ss_pred             CchHhHHHHHc-CCHHHHHHHHhhCCCCcCCCC--CCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316           13 KPATIHGCAQS-GDLLAFQRLLRENPSLLNERN--PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL   89 (445)
Q Consensus        13 ~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~--~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL   89 (445)
                      +.|+||+|+.. |+.++++.|+. .++++|..+  . .|+||||+|+..|+.+++++|+++    |+++|.+|..|.|||
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~-~g~TpLh~Aa~~g~~~iv~~LL~~----Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQ-DNATPLIQATAANSLLACEFLLQN----GANVNQADSAGRGPL  272 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHH-cCCCCCcccccc-CCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHH
Confidence            45799999999 99999998885 688999887  4 799999999999999999999995    899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      |+|+..|+.+++++|+++|++++.+|.+|.||| ++|...++.+++++|+..+..
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL-~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADLGARDSEGRDPL-TIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHH-HHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999 788888999999999877643

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.78  E-value=1e-18  Score=166.48  Aligned_cols=185  Identities=18%  Similarity=0.141  Sum_probs=133.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.+.+++..               ...+..+|++||||||||++|+++++.++.       +++.+++
T Consensus        24 ~~~~ivg~~~~~~~l~~~l~~---------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~~   81 (324)
T 3u61_B           24 TIDECILPAFDKETFKSITSK---------------GKIPHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVNG   81 (324)
T ss_dssp             STTTSCCCHHHHHHHHHHHHT---------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEET
T ss_pred             CHHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEcc
Confidence            467899999999988886651               234566788899999999999999998865       8899998


Q ss_pred             ccccccccCCchhHHHHHHHH---c-----cCcEEEEcCccccc-cCCCCCCchhHHHHHHHHHhhccC--CcEEEEEec
Q 013316          247 TDLVGEFVGHTGPKTRRRIKE---A-----EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG  315 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~---a-----~~~il~lDEid~l~-~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~  315 (445)
                      ++..       ...++..+..   .     .++||||||+|.+. .           +.++.|+..++.  ..+.+|+++
T Consensus        82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~-----------~~~~~L~~~le~~~~~~~iI~~~  143 (324)
T 3u61_B           82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA-----------ESQRHLRSFMEAYSSNCSIIITA  143 (324)
T ss_dssp             TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH-----------HHHHHHHHHHHHHGGGCEEEEEE
T ss_pred             cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH-----------HHHHHHHHHHHhCCCCcEEEEEe
Confidence            7642       2333333322   1     45899999999997 4           567778887775  456677766


Q ss_pred             CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccH-HHHHHHHHHHHHHhhhcc
Q 013316          316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM-DAIAALIEKETTEKQRRE  394 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~  394 (445)
                      +...     ..++++++|| ..+.|++|+.+++.+|++.++..........++.    +++ +++..+ ...+      .
T Consensus       144 n~~~-----~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~----~~~~~~~~~l-~~~~------~  206 (324)
T 3u61_B          144 NNID-----GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIA----IADMKVVAAL-VKKN------F  206 (324)
T ss_dssp             SSGG-----GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCC----BSCHHHHHHH-HHHT------C
T ss_pred             CCcc-----ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCC----CCcHHHHHHH-HHhC------C
Confidence            6544     2489999999 6799999999999888877666544333333333    333 566644 4555      6


Q ss_pred             cCchhhHHHHHHHH
Q 013316          395 MNGGLVDPMLVNAR  408 (445)
Q Consensus       395 ~n~r~l~~~~~~~~  408 (445)
                      ||.|.+.+.++.+.
T Consensus       207 gd~R~a~~~L~~~~  220 (324)
T 3u61_B          207 PDFRKTIGELDSYS  220 (324)
T ss_dssp             SCTTHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHh
Confidence            78888888888874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.78  E-value=1.2e-19  Score=153.62  Aligned_cols=114  Identities=17%  Similarity=0.184  Sum_probs=92.0

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCCh-HHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQT-PLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t-pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      ++|++++..+ .|.||||+|+ .|+.++++.|+. .+.+++..+. .|+| |||+|+..|+.+++++|+++    |++++
T Consensus        33 ~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~-~g~ttpL~~A~~~~~~~~v~~Ll~~----ga~~~  105 (156)
T 1bi7_B           33 EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADP-ATLTRPVHDAAREGFLDTLVVLHRA----GARLD  105 (156)
T ss_dssp             TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCT-TTCCCHHHHHHHHTCHHHHHHHHHH----TCCSS
T ss_pred             HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCC-CCCcHHHHHHHHCCCHHHHHHHHHc----CCCCc
Confidence            5688888776 6999999986 899999998875 5899999997 7998 99999999999999999995    89999


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316           80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL  122 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl  122 (445)
                      .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.
T Consensus       106 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~  148 (156)
T 1bi7_B          106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA  148 (156)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------
T ss_pred             ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence            9999999999999999999999999999999999999999998

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.78  E-value=6.5e-19  Score=168.63  Aligned_cols=136  Identities=21%  Similarity=0.247  Sum_probs=117.4

Q ss_pred             CccCccCCC-CCchHhHHHHHcC---CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL   78 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v   78 (445)
                      .|++++..+ .|.|++|+++..+   +.+.+.++|...|+++|.++. .|+||||+|+..|+.+++++|+..   .|+++
T Consensus       191 ~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~v  266 (337)
T 4g8k_A          191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQ---EHIEI  266 (337)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTTCHHHHHHHHTS---TTCCT
T ss_pred             cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhhhhHHHHHHHHh---cCCcc
Confidence            578888776 6999999887754   445555666678999999997 799999999999999999999986   57899


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      |.+|..|.||||+|+..|+.+++++|+++||+++.+     +|| ++|...++.+++++|+++|++++..
T Consensus       267 n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L-~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          267 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLV-MTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHH-HHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHH-HHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            999999999999999999999999999999998765     599 8888899999999999999986543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.78  E-value=6.5e-19  Score=159.55  Aligned_cols=151  Identities=18%  Similarity=0.194  Sum_probs=125.8

Q ss_pred             CCccCccCCC--CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            2 QKNQDRRSRS--AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         2 ~~~~~~~~~~--~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      +.|++.+...  .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|++.    |++++
T Consensus        63 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~----~~~~~  136 (240)
T 3eu9_A           63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK-YGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAK----GQDVD  136 (240)
T ss_dssp             HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTT
T ss_pred             HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH-cCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhc----CCCcc
Confidence            3455554333  48999999999999999988875 5888888886 799999999999999999999995    78899


Q ss_pred             cccCCCCcHHHHHHHcCC-HHHHHHHHhcCCCCccccc-CCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316           80 AQNMYGETPLHMAAKNGC-NEAAKLLLAHGAFIEAKAN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~-~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      .++..|.||||+|+..++ .+++++|++.|++++..+. .|.||| |+|+..++.+++++|+++++++..++..+.++..
T Consensus       137 ~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  215 (240)
T 3eu9_A          137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL-HWAVLAGNTTVISLLLEAGANVDAQNIKGESALD  215 (240)
T ss_dssp             CCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHH
T ss_pred             ccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            999999999999996665 7889999999999998887 899999 7888888999999999999888776655555554


Q ss_pred             HH
Q 013316          158 KA  159 (445)
Q Consensus       158 ~a  159 (445)
                      .+
T Consensus       216 ~A  217 (240)
T 3eu9_A          216 LA  217 (240)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.78  E-value=1.5e-19  Score=172.36  Aligned_cols=127  Identities=22%  Similarity=0.174  Sum_probs=106.9

Q ss_pred             CCCccCccCCC-CCchHhHHHHHcCC---HHHHHHHHhhCCCCcCCCCCCCCChHHHHHHh----CCcHHHHHHhhcCCC
Q 013316            1 MQKNQDRRSRS-AKPATIHGCAQSGD---LLAFQRLLRENPSLLNERNPVMAQTPLHVSAG----YNKAEIVKSLLEWPG   72 (445)
Q Consensus         1 l~~~~~~~~~~-~~~t~L~~A~~~g~---~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~----~g~~~iv~~Ll~~~~   72 (445)
                      +++|++++..+ .|.||||+||..|+   .+.+..++.....+++..+. .|+||||+|+.    .|+.+++++|++.+.
T Consensus       151 l~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~  229 (327)
T 1sw6_A          151 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILM  229 (327)
T ss_dssp             HHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHH
Confidence            35789998877 69999999999998   67777777765577899987 79999999999    899999999987410


Q ss_pred             C----------------CCc-------------------------ccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 013316           73 N----------------DKV-------------------------ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI  111 (445)
Q Consensus        73 ~----------------~g~-------------------------~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~  111 (445)
                      .                .|+                         ++|.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus       230 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~  309 (327)
T 1sw6_A          230 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP  309 (327)
T ss_dssp             HHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             HHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            0                000                         57889999999999999999999999999999999


Q ss_pred             cccccCCCChhhhhhcCC
Q 013316          112 EAKANEGKTPLDHLSNGP  129 (445)
Q Consensus       112 ~~~~~~g~tpl~~~a~~~  129 (445)
                      +.+|..|+||| ++|+..
T Consensus       310 ~~~d~~G~TpL-~~A~~~  326 (327)
T 1sw6_A          310 FIANKSGLRPV-DFGAGL  326 (327)
T ss_dssp             TCCCTTSCCGG-GGTCC-
T ss_pred             cccCCCCCCHH-HHHHhc
Confidence            99999999999 666543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.76  E-value=1.1e-18  Score=170.17  Aligned_cols=230  Identities=16%  Similarity=0.084  Sum_probs=147.5

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CCCCCeEEeec
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQR  246 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~~~~~~~~~~  246 (445)
                      ++++|.+..++.+.+++...            .....+.+++|+||||||||++|+.+++.+.....  -...+++.++|
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~------------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPA------------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA   86 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGG------------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             CCCCCHHHHHHHHHHHHHHH------------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence            45899998888888754322            12346778999999999999999999998843200  00227888887


Q ss_pred             cccccc----------------ccCCchhHH-HHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316          247 TDLVGE----------------FVGHTGPKT-RRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  305 (445)
Q Consensus       247 ~~l~~~----------------~~g~~~~~~-~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  305 (445)
                      ....+.                ..|.+...+ ..++...    .+.||||||+|.+...+      ...+.+..++..++
T Consensus        87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~  160 (387)
T 2v1u_A           87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ  160 (387)
T ss_dssp             TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred             CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence            753211                112223332 2233222    23599999999997642      12256667777665


Q ss_pred             ----CCcEEEEEecCchhHHHHHhhCccccccccc-ceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316          306 ----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  380 (445)
Q Consensus       306 ----~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~  380 (445)
                          ..++++|++++..+...  ..++.+++||.. .+.|++|+.+++.+|+...+.....         ...++++++.
T Consensus       161 ~~~~~~~~~~I~~t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---------~~~~~~~~~~  229 (387)
T 2v1u_A          161 ELGDRVWVSLVGITNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---------PGVLDPDVVP  229 (387)
T ss_dssp             CC-----CEEEEECSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---------TTTBCSSHHH
T ss_pred             hcCCCceEEEEEEECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---------CCCCCHHHHH
Confidence                55778888877664321  237889999975 8999999999999999998864210         1233444555


Q ss_pred             HHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          381 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      .+....+    +.+||.|.+.++++.+......         .+...|+.+|+.++++.+
T Consensus       230 ~l~~~~~----~~~G~~r~~~~~l~~a~~~a~~---------~~~~~i~~~~v~~a~~~~  276 (387)
T 2v1u_A          230 LCAALAA----REHGDARRALDLLRVAGEIAER---------RREERVRREHVYSARAEI  276 (387)
T ss_dssp             HHHHHHH----SSSCCHHHHHHHHHHHHHHHHH---------TTCSCBCHHHHHHHHHHH
T ss_pred             HHHHHHH----HhccCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHH
Confidence            4443332    2358999999999988443221         122468899998888765

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.76  E-value=1.9e-17  Score=161.36  Aligned_cols=226  Identities=13%  Similarity=0.092  Sum_probs=149.9

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCC-CCCeEEe
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILP-TDRVTEV  244 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~-~~~~~~~  244 (445)
                      ++++|.+..++.+.+++....            ....+.+++|+||||||||++|+.+++.+....   .-. ..+++.+
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~------------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i   87 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFV------------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV   87 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHH------------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence            569999999988888765432            134567899999999999999999999884420   000 2378888


Q ss_pred             eccccc-----------ccc-------cCCchhH-HHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHH-HHHHHh
Q 013316          245 QRTDLV-----------GEF-------VGHTGPK-TRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEA-LEEIMS  302 (445)
Q Consensus       245 ~~~~l~-----------~~~-------~g~~~~~-~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~-~~~ll~  302 (445)
                      +|+...           ..+       .|.+... +..++...  .+.||||||+|.+...+.       .+. +..|+.
T Consensus        88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~-------~~~~l~~l~~  160 (384)
T 2qby_B           88 NCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRG-------GDIVLYQLLR  160 (384)
T ss_dssp             EHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTT-------SHHHHHHHHT
T ss_pred             ECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCC-------CceeHHHHhc
Confidence            876543           111       1222223 23333322  224999999999976431       145 666666


Q ss_pred             hccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHH
Q 013316          303 VMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL  382 (445)
Q Consensus       303 ~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  382 (445)
                      ..  .++.+|++++..+..  ...++.+++||...+.|++|+.+++.+|+..++.+..        . ...++++++..+
T Consensus       161 ~~--~~~~iI~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~--------~-~~~~~~~~~~~i  227 (384)
T 2qby_B          161 SD--ANISVIMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL--------I-KGTYDDEILSYI  227 (384)
T ss_dssp             SS--SCEEEEEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS--------C-TTSCCSHHHHHH
T ss_pred             CC--cceEEEEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc--------c-cCCcCHHHHHHH
Confidence            55  678888887765431  1237888999988999999999999999999886310        0 123455565544


Q ss_pred             HHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          383 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       383 ~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      . ..+.   +.+||.|.+.++++.+.....           +...|+.+|+.++++.+.
T Consensus       228 ~-~~~~---~~~G~~r~a~~~l~~a~~~a~-----------~~~~i~~~~v~~~~~~~~  271 (384)
T 2qby_B          228 A-AISA---KEHGDARKAVNLLFRAAQLAS-----------GGGIIRKEHVDKAIVDYE  271 (384)
T ss_dssp             H-HHHH---TTCCCHHHHHHHHHHHHHHTT-----------SSSCCCHHHHHHHHHHHH
T ss_pred             H-HHHH---hccCCHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHHh
Confidence            4 3331   346899999999998844322           223688899988887653

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.76  E-value=6.2e-18  Score=180.77  Aligned_cols=214  Identities=19%  Similarity=0.195  Sum_probs=135.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~  243 (445)
                      .++.++|.+....++.+.+.                .....+++|+||||||||++|+.+|+.+...   ..+...+++.
T Consensus       168 ~ld~viGr~~~i~~l~~~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~  231 (854)
T 1qvr_A          168 KLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS  231 (854)
T ss_dssp             CSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred             CCcccCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence            46679999988777776432                2356789999999999999999999998542   1233457899


Q ss_pred             eeccccc--ccccCCchhHHHHHHHHcc----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          244 VQRTDLV--GEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       244 ~~~~~l~--~~~~g~~~~~~~~~~~~a~----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++++.+.  ..+.|+....+..+|..+.    ++||||||+|.+.+.+...   ...++.+.|...++.+.+.+|++|+.
T Consensus       232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~~~i~~I~at~~  308 (854)
T 1qvr_A          232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALARGELRLIGATTL  308 (854)
T ss_dssp             ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEECH
T ss_pred             eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhCCCeEEEEecCc
Confidence            9998886  4577888888888887663    4699999999998755421   12356677788888899999999998


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ..... +..+|+|++||+ .+.|++|+.+++.+|++.++.+....   .    ...++++++..+ ...+.++.......
T Consensus       309 ~~~~~-~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~---~----~~~i~~~al~~~-~~ls~r~i~~~~lp  378 (854)
T 1qvr_A          309 DEYRE-IEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVH---H----GVRISDSAIIAA-ATLSHRYITERRLP  378 (854)
T ss_dssp             HHHHH-HTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHH---T----TCEECHHHHHHH-HHHHHHHCCSSCTH
T ss_pred             hHHhh-hccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhh---c----CCCCCHHHHHHH-HHHHhhhcccccCh
Confidence            87765 667999999996 59999999999999999877654221   1    224455665543 34444443332223


Q ss_pred             hhhHHHHHHHHH
Q 013316          398 GLVDPMLVNARE  409 (445)
Q Consensus       398 r~l~~~~~~~~~  409 (445)
                      +.+..+++.+..
T Consensus       379 ~kai~lldea~a  390 (854)
T 1qvr_A          379 DKAIDLIDEAAA  390 (854)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            445555555543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.75  E-value=6.2e-18  Score=178.82  Aligned_cols=201  Identities=19%  Similarity=0.242  Sum_probs=135.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~  243 (445)
                      .++.++|+++.++++.+.+.                .....++||+||||||||++|+++|+.+...   ..+...+++.
T Consensus       178 ~ld~iiG~~~~i~~l~~~l~----------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~  241 (758)
T 3pxi_A          178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT  241 (758)
T ss_dssp             CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred             CCCCccCchHHHHHHHHHHh----------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence            35679999999888887543                3456789999999999999999999998542   2233457777


Q ss_pred             eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhH
Q 013316          244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM  320 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~  320 (445)
                      +++   ...|.|+.+..++.+|..+.   ++|||||     .          ..++++.|+..++.+.+.+|++|+...+
T Consensus       242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l~~~~v~~I~at~~~~~  303 (758)
T 3pxi_A          242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLARGELQCIGATTLDEY  303 (758)
T ss_dssp             C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTTSSSCEEEEECCTTTT
T ss_pred             ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHHhcCCEEEEeCCChHHH
Confidence            776   45678888888888887664   7999999     1          1156788899999999999999999998


Q ss_pred             HHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316          321 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV  400 (445)
Q Consensus       321 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l  400 (445)
                      ...+..+|+|++|| ..|.|+.|+.+++.+|++.++.+....       ....++++++..+. ..+..........+..
T Consensus       304 ~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~-------~~~~i~~~al~~~~-~~s~~~i~~~~~p~~a  374 (758)
T 3pxi_A          304 RKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAH-------HRVSITDDAIEAAV-KLSDRYISDRFLPDKA  374 (758)
T ss_dssp             HHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGG-------SSCSCCHHHHHHHH-HHHHHSSCCSCTTHHH
T ss_pred             HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHH-HHhhcccccCcCCcHH
Confidence            77777899999999 679999999999999999877664321       12345666666443 3333333323333445


Q ss_pred             HHHHHHHHHh
Q 013316          401 DPMLVNAREN  410 (445)
Q Consensus       401 ~~~~~~~~~~  410 (445)
                      ..+++.+...
T Consensus       375 i~ll~~a~~~  384 (758)
T 3pxi_A          375 IDLIDEAGSK  384 (758)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5566655443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.75  E-value=2.5e-18  Score=143.55  Aligned_cols=138  Identities=16%  Similarity=0.158  Sum_probs=102.0

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +++|.++.++++.+.+...              +....+|+|+||||||||++|++||+.+...    ..+|+ ++|+.+
T Consensus         2 ~iiG~s~~~~~~~~~~~~~--------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~----~~~~v-~~~~~~   62 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQL--------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNA----QGEFV-YRELTP   62 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHH--------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTT----TSCCE-EEECCT
T ss_pred             CceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCcc----CCCEE-EECCCC
Confidence            4899999998888876654              3466789999999999999999999876442    33888 999876


Q ss_pred             cccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHH--h
Q 013316          250 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVI--A  325 (445)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~--~  325 (445)
                      ...      ......+..+.+++|||||||.+.+           +.+..|+..|..  .++.+|++++.+....+.  .
T Consensus        63 ~~~------~~~~~~~~~a~~g~l~ldei~~l~~-----------~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~  125 (145)
T 3n70_A           63 DNA------PQLNDFIALAQGGTLVLSHPEHLTR-----------EQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNH  125 (145)
T ss_dssp             TTS------SCHHHHHHHHTTSCEEEECGGGSCH-----------HHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSC
T ss_pred             Ccc------hhhhcHHHHcCCcEEEEcChHHCCH-----------HHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCC
Confidence            543      3456778889999999999999976           667778877754  456788887766544322  2


Q ss_pred             hCcccccccc-cceeCCCC
Q 013316          326 SNEGFCRRVT-KFFHFNDF  343 (445)
Q Consensus       326 ~~~~l~~R~~-~~i~~~~~  343 (445)
                      .++.|..|+. ..|.+|++
T Consensus       126 ~~~~L~~rl~~~~i~lPpL  144 (145)
T 3n70_A          126 IIAELYYCFAMTQIACLPL  144 (145)
T ss_dssp             CCHHHHHHHHHHEEECCCC
T ss_pred             CCHHHHHHhcCCEEeCCCC
Confidence            2466667774 45788875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.75  E-value=2.1e-18  Score=142.55  Aligned_cols=115  Identities=23%  Similarity=0.255  Sum_probs=102.2

Q ss_pred             CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 013316           38 SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANE  117 (445)
Q Consensus        38 ~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~  117 (445)
                      .++ .++. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus         2 ~d~-~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~   75 (137)
T 3c5r_A            2 IDP-FTNH-RGETLLHIASIKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ   75 (137)
T ss_dssp             --C-CCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG
T ss_pred             CCC-CcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC
Confidence            444 4454 799999999999999999999995    8899999999999999999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          118 GKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       118 g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      |+||| |+|+..++.+++++|++++++...++..+.++...+
T Consensus        76 g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  116 (137)
T 3c5r_A           76 NDSPL-HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT  116 (137)
T ss_dssp             GCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGC
T ss_pred             CCCHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            99999 788889999999999999999888777776666544

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.75  E-value=3.5e-18  Score=172.60  Aligned_cols=199  Identities=17%  Similarity=0.199  Sum_probs=127.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCC---CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA---RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~  243 (445)
                      .|++++|++..++.+.+++......  .+......+.   ..+.++||+||||||||++|+++|+.++.       ++++
T Consensus        37 ~~~dliG~~~~~~~L~~~l~~~~~~--~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~-------~~i~  107 (516)
T 1sxj_A           37 NLQQVCGNKGSVMKLKNWLANWENS--KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILE  107 (516)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTHHHH--HHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEE
T ss_pred             CHHHhcCCHHHHHHHHHHHHHhHhh--chhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC-------CEEE
Confidence            4678999999999999987643221  1111111111   24578999999999999999999999865       8999


Q ss_pred             eecccccccccCCch-------hHHHHHHHH--------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc
Q 013316          244 VQRTDLVGEFVGHTG-------PKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK  308 (445)
Q Consensus       244 ~~~~~l~~~~~g~~~-------~~~~~~~~~--------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~  308 (445)
                      ++++++.+.......       ..+...|..        ..++||||||+|.+....+        ..++.|+..++..+
T Consensus       108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~~  179 (516)
T 1sxj_A          108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTS  179 (516)
T ss_dssp             ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCS
T ss_pred             EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhcC
Confidence            999886543221100       001122222        3568999999999987433        23456666665433


Q ss_pred             --EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHH
Q 013316          309 --VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE  386 (445)
Q Consensus       309 --~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  386 (445)
                        +++|+++...+.      -+++++|+ ..+.|++|+.+++.+++...+.+..       +.    ++++++..+. ..
T Consensus       180 ~~iIli~~~~~~~~------l~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~-------~~----i~~~~l~~la-~~  240 (516)
T 1sxj_A          180 TPLILICNERNLPK------MRPFDRVC-LDIQFRRPDANSIKSRLMTIAIREK-------FK----LDPNVIDRLI-QT  240 (516)
T ss_dssp             SCEEEEESCTTSST------TGGGTTTS-EEEECCCCCHHHHHHHHHHHHHHHT-------CC----CCTTHHHHHH-HH
T ss_pred             CCEEEEEcCCCCcc------chhhHhce-EEEEeCCCCHHHHHHHHHHHHHHcC-------CC----CCHHHHHHHH-HH
Confidence              444443322111      24455555 7899999999999999988776531       22    3445666444 44


Q ss_pred             HHHhhhcccCchhhHHHHHHH
Q 013316          387 TTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       387 ~~~~~~~~~n~r~l~~~~~~~  407 (445)
                      +      .||.|.+.++++.+
T Consensus       241 s------~GdiR~~i~~L~~~  255 (516)
T 1sxj_A          241 T------RGDIRQVINLLSTI  255 (516)
T ss_dssp             T------TTCHHHHHHHHTHH
T ss_pred             c------CCcHHHHHHHHHHH
Confidence            4      57777888888766

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.74  E-value=5e-19  Score=159.87  Aligned_cols=133  Identities=18%  Similarity=0.195  Sum_probs=113.1

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+||..|+.++++.|+. .++++|..+. .|+||||+|+..|+.+++++|++.    |++++.
T Consensus        42 ~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~----ga~~~~  115 (229)
T 2vge_A           42 KEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDS-HGWTPLHCAASCNDTVICMALVQH----GAAIFA  115 (229)
T ss_dssp             HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTT----TCCTTC
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCccc
Confidence            4577888766 69999999999999999998885 5899999997 799999999999999999999995    889999


Q ss_pred             cc-CCCCcHHHHH--HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           81 QN-MYGETPLHMA--AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        81 ~d-~~g~tpLh~A--~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      ++ ..|.||||+|  +..|+.+++++|+++|++++.+|..|.||++.++....    .++++..+++
T Consensus       116 ~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~----~~~ll~~ga~  178 (229)
T 2vge_A          116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG----DELSFREGES  178 (229)
T ss_dssp             CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST----TBCCBCTTCE
T ss_pred             ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc----cccCcccccc
Confidence            86 5999999999  99999999999999999999999888888833333322    2455566654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.74  E-value=1.2e-18  Score=152.40  Aligned_cols=166  Identities=20%  Similarity=0.299  Sum_probs=116.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC---CCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~---~~~~~~~~  243 (445)
                      .+++++|.++..+.+.+.+.                ...+.+++|+||||||||++|+.+++.+.....   ....+++.
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~   83 (195)
T 1jbk_A           20 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA   83 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             cccccccchHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence            45679999988777776432                235678999999999999999999999865221   11336778


Q ss_pred             eeccccc--ccccCCchhHHHHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          244 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       244 ~~~~~l~--~~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++++.+.  ..+.|.....+..++...    .+.||||||+|.+.+.+.....   ..+++.|...++.+++.+|++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~~~~~~~i~~~~~  160 (195)
T 1jbk_A           84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALARGELHCVGATTL  160 (195)
T ss_dssp             ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHHTTSCCEEEEECH
T ss_pred             eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhccCCeEEEEeCCH
Confidence            8877664  233444444555555432    3569999999999865432111   123455566667788889999888


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHH
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL  352 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il  352 (445)
                      .........++++++||. .+.|++|+.+++.+|+
T Consensus       161 ~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          161 DEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred             HHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence            776666667899999996 7999999999998875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.74  E-value=1.7e-16  Score=144.10  Aligned_cols=201  Identities=18%  Similarity=0.223  Sum_probs=136.1

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC--------
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD--------  239 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~--------  239 (445)
                      +++++|.+..++.+.+++..               ...+..++|+||||||||++|+.+++.+.........        
T Consensus        22 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (250)
T 1njg_A           22 FADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC   86 (250)
T ss_dssp             GGGCCSCHHHHHHHHHHHHH---------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence            45699999998888876542               1234579999999999999999999988653221110        


Q ss_pred             ---------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316          240 ---------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV  303 (445)
Q Consensus       240 ---------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~  303 (445)
                               .++.++...      ......+..+++..       .+.+|||||+|.+.+           +.++.|+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~~  149 (250)
T 1njg_A           87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKT  149 (250)
T ss_dssp             HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHHH
T ss_pred             HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHHH
Confidence                     112221111      01223345555543       358999999999865           566778877


Q ss_pred             ccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHH
Q 013316          304 MDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA  381 (445)
Q Consensus       304 ~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  381 (445)
                      ++.  ..+++|++++....     ..+.+++|+ ..+.|++|+.+++.+++..++.+.           ...++++++..
T Consensus       150 l~~~~~~~~~i~~t~~~~~-----~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~-----------~~~~~~~~~~~  212 (250)
T 1njg_A          150 LEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE-----------HIAHEPRALQL  212 (250)
T ss_dssp             HHSCCTTEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHT-----------TCCBCHHHHHH
T ss_pred             HhcCCCceEEEEEeCChHh-----CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhc-----------CCCCCHHHHHH
Confidence            765  45677776655332     267788886 789999999999999999988753           12445566664


Q ss_pred             HHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          382 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       382 ~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                      +. ..+      .||.|.+.++++++...       .  .    ..||.+|+.+++
T Consensus       213 l~-~~~------~G~~~~~~~~~~~~~~~-------~--~----~~i~~~~v~~~~  248 (250)
T 1njg_A          213 LA-RAA------EGSLRDALSLTDQAIAS-------G--D----GQVSTQAVSAML  248 (250)
T ss_dssp             HH-HHH------TTCHHHHHHHHHHHHTT-------T--T----SSBCHHHHHHHS
T ss_pred             HH-HHc------CCCHHHHHHHHHHHHhc-------c--C----ceecHHHHHHHh
Confidence            44 444      67899999999887211       0  1    169999998875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.73  E-value=3.9e-17  Score=148.33  Aligned_cols=183  Identities=10%  Similarity=0.016  Sum_probs=123.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHH-HccCcEEEEcCcccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP  283 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-~a~~~il~lDEid~l~~  283 (445)
                      ...+++|+||||||||++|+.+++.+...+.    ++..++++.+...+..        .+. ...+.+|||||+|.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~vliiDe~~~~~~  118 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELER----RSFYIPLGIHASISTA--------LLEGLEQFDLICIDDVDAVAG  118 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEEGGGGGGSCGG--------GGTTGGGSSEEEEETGGGGTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHH--------HHHhccCCCEEEEeccccccC
Confidence            4678999999999999999999999986433    7888888776543211        111 13568999999999875


Q ss_pred             CCCCCCchhHHHHHHHHHhhc----cCCcE-EEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHH
Q 013316          284 MQKADDKDYGIEALEEIMSVM----DGGKV-VVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       284 ~~~~~~~~~~~~~~~~ll~~~----~~~~~-~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l  356 (445)
                      ..         ..++.|+..+    +.+.+ +++.++.....  +...++.+++||.  ..+.|++|+.+++.+++..++
T Consensus       119 ~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~  187 (242)
T 3bos_A          119 HP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPME--AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA  187 (242)
T ss_dssp             CH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTT--TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred             CH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH--HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH
Confidence            32         1123333333    33544 44444332211  1112478888986  889999999999999999988


Q ss_pred             hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316          357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG  436 (445)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a  436 (445)
                      .+..           ..++++++..+. ..+      +||.|.+.++++++......          +...||.+++.++
T Consensus       188 ~~~~-----------~~~~~~~~~~l~-~~~------~g~~r~l~~~l~~~~~~a~~----------~~~~It~~~v~~~  239 (242)
T 3bos_A          188 AMRG-----------LQLPEDVGRFLL-NRM------ARDLRTLFDVLDRLDKASMV----------HQRKLTIPFVKEM  239 (242)
T ss_dssp             HHTT-----------CCCCHHHHHHHH-HHT------TTCHHHHHHHHHHHHHHHHH----------HTCCCCHHHHHHH
T ss_pred             HHcC-----------CCCCHHHHHHHH-HHc------cCCHHHHHHHHHHHHHHHHH----------hCCCCcHHHHHHH
Confidence            7531           245666766444 445      78999999999988543211          1125999999887


Q ss_pred             HH
Q 013316          437 LK  438 (445)
Q Consensus       437 ~~  438 (445)
                      ++
T Consensus       240 l~  241 (242)
T 3bos_A          240 LR  241 (242)
T ss_dssp             HT
T ss_pred             hh
Confidence            64

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.73  E-value=1.5e-17  Score=137.22  Aligned_cols=101  Identities=24%  Similarity=0.356  Sum_probs=92.1

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.
T Consensus        35 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~  108 (136)
T 2jab_A           35 ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDA-IGFTPLHLAAFIGHLEIAEVLLKH----GADVNA  108 (136)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCTTC
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCcC
Confidence            4677877766 69999999999999999998885 5889999987 799999999999999999999995    889999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHG  108 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~g  108 (445)
                      +|..|.||||+|+..|+.+++++|+++|
T Consensus       109 ~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          109 QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999876

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.73  E-value=4.6e-18  Score=159.92  Aligned_cols=117  Identities=24%  Similarity=0.251  Sum_probs=99.1

Q ss_pred             CCccCccC-------CCCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCC
Q 013316            2 QKNQDRRS-------RSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWP   71 (445)
Q Consensus         2 ~~~~~~~~-------~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~   71 (445)
                      +.|++++.       ...|.||||+||..   |+.++++.|+.. ++++|..+. .|+||||+|+..|+.+++++|+++ 
T Consensus       172 ~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~-  248 (301)
T 2b0o_E          172 ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAA-DGNTALHYAALYNQPDCLKLLLKG-  248 (301)
T ss_dssp             HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred             hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc-
Confidence            35666664       45799999999997   899999988865 889999997 799999999999999999999995 


Q ss_pred             CCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCC
Q 013316           72 GNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGS  131 (445)
Q Consensus        72 ~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~  131 (445)
                         |++++.+|..|.||||+|+..++.+++++|+++|++      .|.||| ++|+..++
T Consensus       249 ---gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpL-h~A~~~g~  298 (301)
T 2b0o_E          249 ---RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPL-HVDYSWVI  298 (301)
T ss_dssp             ---TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCC-C-------
T ss_pred             ---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChh-HHHHhcCC
Confidence               899999999999999999999999999999999886      589999 67766654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.73  E-value=1.8e-18  Score=142.81  Aligned_cols=116  Identities=22%  Similarity=0.213  Sum_probs=104.1

Q ss_pred             CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 013316           37 PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN  116 (445)
Q Consensus        37 ~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~  116 (445)
                      +.+++..+. .|.||||+|+..|+.+++++|++.    |++++.+|..|.||||+|+. ++.+++++|+++|++++.+|.
T Consensus         2 ~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~   75 (136)
T 1d9s_A            2 SPGIHMLGG-SSDAGLATAAARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP   75 (136)
T ss_dssp             CCCCSCCCC-CCSCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT
T ss_pred             CCCccCCCC-CCccHHHHHHHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC
Confidence            457888887 799999999999999999999995    88999999999999999999 999999999999999999999


Q ss_pred             C-CCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          117 E-GKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       117 ~-g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      . |+||| |+|+..++.+++++|+++++++..++..+.++...+
T Consensus        76 ~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A  118 (136)
T 1d9s_A           76 ATLTRPV-HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA  118 (136)
T ss_dssp             TTTBCHH-HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHH
T ss_pred             CCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            9 99999 788888999999999999988777766555555443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.72  E-value=3.4e-16  Score=149.30  Aligned_cols=207  Identities=17%  Similarity=0.216  Sum_probs=135.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++|++.++..+...+.....+           ..++.+++|+||||||||++|++++..++.       ++...+.
T Consensus        23 ~l~~~~g~~~~~~~l~~~i~~~~~~-----------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-------~~~~~sg   84 (334)
T 1in4_A           23 SLDEFIGQENVKKKLSLALEAAKMR-----------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSG   84 (334)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHH-----------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred             cHHHccCcHHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEec
Confidence            3566889888877777654432111           235678999999999999999999999865       4444443


Q ss_pred             ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------------------
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------------------  306 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------------  306 (445)
                      +.+.      ....+...+... .+.|+||||++.+.+           .+.+.|+..++.                   
T Consensus        85 ~~~~------~~~~l~~~~~~~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~  147 (334)
T 1in4_A           85 PVLV------KQGDMAAILTSLERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRID  147 (334)
T ss_dssp             TTCC------SHHHHHHHHHHCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC--------------
T ss_pred             hHhc------CHHHHHHHHHHccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCccccccccc
Confidence            3221      233444555443 568999999999875           233344433322                   


Q ss_pred             -CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316          307 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  385 (445)
Q Consensus       307 -~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (445)
                       ..+.++.+++...     ..++++++||...+.|++|+.+++.+|++...+..           ...++++++..+. .
T Consensus       148 l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~-----------~~~~~~~~~~~ia-~  210 (334)
T 1in4_A          148 IQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM-----------DVEIEDAAAEMIA-K  210 (334)
T ss_dssp             -CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT-----------TCCBCHHHHHHHH-H
T ss_pred             CCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc-----------CCCcCHHHHHHHH-H
Confidence             1255666655543     23789999998889999999999999999876642           1245566665443 4


Q ss_pred             HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      .+      .|+.|.+.++++++.......         +...||.+++.++++.+
T Consensus       211 ~~------~G~~R~a~~ll~~~~~~a~~~---------~~~~It~~~v~~al~~~  250 (334)
T 1in4_A          211 RS------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL  250 (334)
T ss_dssp             TS------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred             hc------CCChHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHh
Confidence            43      567788888888875433221         11257777777777654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.72  E-value=1.6e-17  Score=158.65  Aligned_cols=226  Identities=14%  Similarity=0.086  Sum_probs=137.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++|++.++..+...+.                  ...+++|+||||||||++|+++++.++.       ++..+++
T Consensus        25 ~~~~i~g~~~~~~~l~~~l~------------------~~~~vll~G~pGtGKT~la~~la~~~~~-------~~~~i~~   79 (331)
T 2r44_A           25 VGKVVVGQKYMINRLLIGIC------------------TGGHILLEGVPGLAKTLSVNTLAKTMDL-------DFHRIQF   79 (331)
T ss_dssp             HTTTCCSCHHHHHHHHHHHH------------------HTCCEEEESCCCHHHHHHHHHHHHHTTC-------CEEEEEC
T ss_pred             hccceeCcHHHHHHHHHHHH------------------cCCeEEEECCCCCcHHHHHHHHHHHhCC-------CeEEEec
Confidence            34569999998877765432                  1358999999999999999999998765       7777776


Q ss_pred             cc------cccccc-CCchhHHHHHHHHcc----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------
Q 013316          247 TD------LVGEFV-GHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  307 (445)
Q Consensus       247 ~~------l~~~~~-g~~~~~~~~~~~~a~----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  307 (445)
                      +.      +.+... +...    ..+....    ++||||||++.+.+           +.++.|++.|+++        
T Consensus        80 ~~~~~~~~l~g~~~~~~~~----~~~~~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~  144 (331)
T 2r44_A           80 TPDLLPSDLIGTMIYNQHK----GNFEVKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTT  144 (331)
T ss_dssp             CTTCCHHHHHEEEEEETTT----TEEEEEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEE
T ss_pred             CCCCChhhcCCceeecCCC----CceEeccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEE
Confidence            31      222211 1000    0011111    37999999998876           6677888877643        


Q ss_pred             -----cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccc-----------cccC
Q 013316          308 -----KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYG-----------FKLH  371 (445)
Q Consensus       308 -----~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~-----------~~~~  371 (445)
                           .+++|+++++.........+++|++||+..+.|+.|+.+++.+|++..+...........           ....
T Consensus       145 ~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  224 (331)
T 2r44_A          145 YPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINK  224 (331)
T ss_dssp             EECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHT
T ss_pred             EECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhcc
Confidence                 356666666443211112479999999888999999999999999988765311000000           0001


Q ss_pred             CcccHHHHHHHHHHHHH----Hh---------hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          372 SSCSMDAIAALIEKETT----EK---------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       372 ~~~~~~~l~~~~~~~~~----~~---------~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      ..++++.+..+......    ++         .....+.|.+.+++..+......         .+...|+.+|+.+++.
T Consensus       225 v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l---------~g~~~v~~~dv~~~~~  295 (331)
T 2r44_A          225 VTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF---------NNRDYVLPEDIKEVAY  295 (331)
T ss_dssp             CBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH---------TTCSBCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHH
Confidence            23455555544322210    10         11233577777777766333222         1223588888888877


Q ss_pred             HHH
Q 013316          439 LLL  441 (445)
Q Consensus       439 ~~~  441 (445)
                      .+.
T Consensus       296 ~vl  298 (331)
T 2r44_A          296 DIL  298 (331)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.72  E-value=8.6e-18  Score=134.32  Aligned_cols=104  Identities=38%  Similarity=0.502  Sum_probs=96.1

Q ss_pred             CCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316           43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL  122 (445)
Q Consensus        43 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl  122 (445)
                      +|. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+|||
T Consensus         5 ~d~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl   79 (115)
T 2l6b_A            5 GSK-DGNTPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE   79 (115)
T ss_dssp             CSC-SSCCHHHHHHHHTCHHHHHHHTTT----TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred             cCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            344 699999999999999999999995    889999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316          123 DHLSNGPGSAKLRELLLWHSEEQRKRRALE  152 (445)
Q Consensus       123 ~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~  152 (445)
                       ++|...++.+++++|+++|++++..+..+
T Consensus        80 -~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~  108 (115)
T 2l6b_A           80 -HLAKKNGHHEIVKLLDAKGADVNARSWGS  108 (115)
T ss_dssp             -HHHHTTTCHHHHHHHHTTSSSHHHHSCCC
T ss_pred             -HHHHHCCCHHHHHHHHHcCCCCCcCCccc
Confidence             88888899999999999999988776544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.71  E-value=7.4e-18  Score=136.50  Aligned_cols=108  Identities=22%  Similarity=0.194  Sum_probs=97.5

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS  126 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a  126 (445)
                      .|.||||+|+..|+.+++++|++.    |.+++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+||| |+|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL-~~A   80 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL-LSA   80 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHT----TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc----CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHH-HHH
Confidence            588999999999999999999995    789999999999999999999999999999999999999999999999 888


Q ss_pred             cCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          127 NGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       127 ~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      +..++.+++++|+++++++..++..+.++...+
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            888999999999999998877766665554433

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.71  E-value=9.4e-17  Score=152.79  Aligned_cols=200  Identities=14%  Similarity=0.107  Sum_probs=128.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH--ccCcEEEEcCccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLI  282 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~--a~~~il~lDEid~l~  282 (445)
                      .+.+++|+||||||||++|+++++.+...    ..+++.++++.+...+.+.........|..  ...++|||||+|.+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~  111 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR----GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS  111 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHT----TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence            46789999999999999999999998653    238899998887555443211111111211  246899999999987


Q ss_pred             cCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316          283 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                      .++     .....+...+-...+.+..++++++++..  .+...+++|++||.  ..+.|++ +.+++.+|++.++.+. 
T Consensus       112 ~~~-----~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~-  182 (324)
T 1l8q_A          112 GKE-----RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEF-  182 (324)
T ss_dssp             TCH-----HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHT-
T ss_pred             CCh-----HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhc-
Confidence            532     11112222222223445555555543322  11234899999996  6789999 9999999999988753 


Q ss_pred             ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhc-cHHHHHHHHHH
Q 013316          361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI-TLEDLEAGLKL  439 (445)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~d~~~a~~~  439 (445)
                                ...++++++..+. ..      . +|.|++.++++++... ......    ..+...| |.+++.++++.
T Consensus       183 ----------~~~l~~~~l~~l~-~~------~-g~~r~l~~~l~~~~~~-~~~~l~----~~~~~~i~t~~~i~~~~~~  239 (324)
T 1l8q_A          183 ----------NLELRKEVIDYLL-EN------T-KNVREIEGKIKLIKLK-GFEGLE----RKERKERDKLMQIVEFVAN  239 (324)
T ss_dssp             ----------TCCCCHHHHHHHH-HH------C-SSHHHHHHHHHHHHHH-CHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCHHHHHHHH-Hh------C-CCHHHHHHHHHHHHHc-CHHHhc----cccccCCCCHHHHHHHHHH
Confidence                      1245666766444 32      2 6889999999988554 000000    1234568 88999988876


Q ss_pred             H
Q 013316          440 L  440 (445)
Q Consensus       440 ~  440 (445)
                      .
T Consensus       240 ~  240 (324)
T 1l8q_A          240 Y  240 (324)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.71  E-value=9.6e-17  Score=152.23  Aligned_cols=187  Identities=25%  Similarity=0.277  Sum_probs=130.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.+.+++.                .....+++|+||||||||++|+.+++.+.....  ..+++.+++
T Consensus        15 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~   76 (319)
T 2chq_A           15 TLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNA   76 (319)
T ss_dssp             SGGGSCSCHHHHHHHHTTTT----------------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH--HHHCEEEET
T ss_pred             CHHHHhCCHHHHHHHHHHHh----------------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc--cCCeEEEeC
Confidence            35679999999888876432                233446999999999999999999998743110  115777887


Q ss_pred             ccccccccCCchhHHHHHHH-----HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316          247 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  319 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~-----~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~  319 (445)
                      ++..+.  ......+.....     ...+.||||||+|.+.+           +.++.|+..++.  ..+++|++++...
T Consensus        77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~  143 (319)
T 2chq_A           77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYSKSCRFILSCNYVS  143 (319)
T ss_dssp             TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred             ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence            764321  111111222221     13468999999999875           667888888886  5567777665433


Q ss_pred             HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchh
Q 013316          320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  399 (445)
Q Consensus       320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~  399 (445)
                           ...+++++|| ..+.|++|+.+++.+++..++.+..           ..++++++..+. ..+      .||.|.
T Consensus       144 -----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~-~~~------~G~~r~  199 (319)
T 2chq_A          144 -----RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALI-YIS------GGDFRK  199 (319)
T ss_dssp             -----GSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTC-----------CCBCHHHHHHHH-HTT------TTCHHH
T ss_pred             -----hcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHc------CCCHHH
Confidence                 2378899999 5899999999999999998887641           245667776554 555      678888


Q ss_pred             hHHHHHHHH
Q 013316          400 VDPMLVNAR  408 (445)
Q Consensus       400 l~~~~~~~~  408 (445)
                      +.+.++.+.
T Consensus       200 ~~~~l~~~~  208 (319)
T 2chq_A          200 AINALQGAA  208 (319)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887763

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.71  E-value=4.6e-17  Score=131.85  Aligned_cols=103  Identities=35%  Similarity=0.530  Sum_probs=93.1

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.    |++++.
T Consensus        23 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~----g~~~~~   96 (126)
T 1n0r_A           23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GADVNA   96 (126)
T ss_dssp             HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTC
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCC-CCCcHHHHHHHcChHHHHHHHHHc----CCCCcc
Confidence            3466666655 69999999999999999998875 6888999987 799999999999999999999995    889999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAF  110 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~  110 (445)
                      +|..|.||||+|+..++.+++++|+++||+
T Consensus        97 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           97 KDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999986

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.70  E-value=2.1e-16  Score=150.48  Aligned_cols=186  Identities=25%  Similarity=0.308  Sum_probs=127.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.+..++..                ....+++|+||||||||++|+++++.+.....  ...++.+++
T Consensus        23 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~--~~~~~~~~~   84 (327)
T 1iqp_A           23 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGENW--RHNFLELNA   84 (327)
T ss_dssp             STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH--HHHEEEEET
T ss_pred             CHHHhhCCHHHHHHHHHHHHc----------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCceEEeec
Confidence            356799999999988876542                23457999999999999999999998753210  114777777


Q ss_pred             ccccccccCCchhHHHHHH-----HHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316          247 TDLVGEFVGHTGPKTRRRI-----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  319 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~-----~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~  319 (445)
                      ++..+.-  .....+....     ....++||||||+|.+.+           +.++.|+..++.  ..+++|++++...
T Consensus        85 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~  151 (327)
T 1iqp_A           85 SDERGIN--VIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS  151 (327)
T ss_dssp             TCHHHHH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             cccCchH--HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence            6542210  0011111111     114568999999999875           567778877764  4566666655432


Q ss_pred             HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchh
Q 013316          320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  399 (445)
Q Consensus       320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~  399 (445)
                      .     ..+++++|| ..+.|++|+.+++.+++...+.+..           ..++++++..+. ..+      .||.|.
T Consensus       152 ~-----l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~-~~~------~g~~r~  207 (327)
T 1iqp_A          152 K-----IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAIL-YIA------EGDMRR  207 (327)
T ss_dssp             G-----SCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHH-HHH------TTCHHH
T ss_pred             c-----cCHHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH-HHC------CCCHHH
Confidence            2     368889998 4899999999999999998887531           235666766544 455      678888


Q ss_pred             hHHHHHHH
Q 013316          400 VDPMLVNA  407 (445)
Q Consensus       400 l~~~~~~~  407 (445)
                      +.++++.+
T Consensus       208 ~~~~l~~~  215 (327)
T 1iqp_A          208 AINILQAA  215 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888876

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.70  E-value=1.2e-16  Score=153.98  Aligned_cols=187  Identities=20%  Similarity=0.263  Sum_probs=125.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.+..++.                .....+++|+||||||||++|+++++.+..... ....++.+++
T Consensus        35 ~~~~i~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~   97 (353)
T 1sxj_D           35 NLDEVTAQDHAVTVLKKTLK----------------SANLPHMLFYGPPGTGKTSTILALTKELYGPDL-MKSRILELNA   97 (353)
T ss_dssp             STTTCCSCCTTHHHHHHHTT----------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH-HTTSEEEECS
T ss_pred             CHHHhhCCHHHHHHHHHHHh----------------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcc-cccceEEEcc
Confidence            46779999999988887532                233456999999999999999999999764200 0125777777


Q ss_pred             cccccc-ccCCchhHHHHHHH---------------HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--Cc
Q 013316          247 TDLVGE-FVGHTGPKTRRRIK---------------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GK  308 (445)
Q Consensus       247 ~~l~~~-~~g~~~~~~~~~~~---------------~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~  308 (445)
                      ++..+. .+..   .+.....               ...+.||||||+|.+.+           ..++.|+..+++  ..
T Consensus        98 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~~~~  163 (353)
T 1sxj_D           98 SDERGISIVRE---KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETYSGV  163 (353)
T ss_dssp             SSCCCHHHHTT---HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTTT
T ss_pred             ccccchHHHHH---HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhcCCC
Confidence            664211 1110   1111111               12346999999999976           556777777764  33


Q ss_pred             EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHH
Q 013316          309 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT  388 (445)
Q Consensus       309 ~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (445)
                      ..+|++++...     ...|++++|| ..+.|++|+.+++..++...+.+..           ..++++++..+. ..+ 
T Consensus       164 ~~~il~~~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~-~~~-  224 (353)
T 1sxj_D          164 TRFCLICNYVT-----RIIDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERIL-DIS-  224 (353)
T ss_dssp             EEEEEEESCGG-----GSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHH-HHT-
T ss_pred             ceEEEEeCchh-----hCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHH-HHc-
Confidence            44455544332     2378899999 5899999999999999998876531           245667776555 444 


Q ss_pred             HhhhcccCchhhHHHHHHHH
Q 013316          389 EKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       389 ~~~~~~~n~r~l~~~~~~~~  408 (445)
                           .||.|.+.++++.+.
T Consensus       225 -----~G~~r~~~~~l~~~~  239 (353)
T 1sxj_D          225 -----AGDLRRGITLLQSAS  239 (353)
T ss_dssp             -----SSCHHHHHHHHHHTH
T ss_pred             -----CCCHHHHHHHHHHHH
Confidence                 367888888887763

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.70  E-value=2.1e-18  Score=143.63  Aligned_cols=133  Identities=15%  Similarity=0.194  Sum_probs=97.2

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +++|.++.++++.+.+...              .....+|+|+||||||||++|+++|+.+.        +|+.++|+.+
T Consensus         5 ~~iG~s~~~~~l~~~~~~~--------------~~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~   62 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAA--------------AKRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEY   62 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHH--------------HTCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTH
T ss_pred             CceeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhC
Confidence            3899999999888876644              23567899999999999999999987642        7899999887


Q ss_pred             cccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHH-HHh
Q 013316          250 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKR-VIA  325 (445)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~-~~~  325 (445)
                      ...+       ....++.+.+++|||||||.+.+           +.+..|++.+++   ..+.+|++++.+.... .- 
T Consensus        63 ~~~~-------~~~~~~~a~~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-  123 (143)
T 3co5_A           63 LIDM-------PMELLQKAEGGVLYVGDIAQYSR-----------NIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-  123 (143)
T ss_dssp             HHHC-------HHHHHHHTTTSEEEEEECTTCCH-----------HHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-
T ss_pred             ChHh-------hhhHHHhCCCCeEEEeChHHCCH-----------HHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-
Confidence            5433       56788889999999999999976           567777777764   4577888876553221 00 


Q ss_pred             hCcccccccc-cceeCCCC
Q 013316          326 SNEGFCRRVT-KFFHFNDF  343 (445)
Q Consensus       326 ~~~~l~~R~~-~~i~~~~~  343 (445)
                      .++.|..||. ..|.+|++
T Consensus       124 ~~~~L~~rl~~~~i~lPpL  142 (143)
T 3co5_A          124 CEEKLAGLFSESVVRIPPL  142 (143)
T ss_dssp             HHHHHHHHSSSEEEEECCC
T ss_pred             ccHHHHHHhcCcEEeCCCC
Confidence            2456677764 56788876

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.70  E-value=6e-17  Score=159.96  Aligned_cols=193  Identities=15%  Similarity=0.193  Sum_probs=124.2

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH--c-cCcEEEEcCccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--A-EGGILFVDEAYRLI  282 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~--a-~~~il~lDEid~l~  282 (445)
                      +.+++|+||||||||++|++|++.+....  ...+++.++++.+...+.+.........|..  . ...||||||+|.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~  207 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI  207 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHC--CSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence            67899999999999999999999985531  1237888898877554433211111112222  2 56899999999998


Q ss_pred             cCCCCCCchhHHHHHHHHHhh----ccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHH
Q 013316          283 PMQKADDKDYGIEALEEIMSV----MDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l  356 (445)
                      .+.         ..++.|+..    .+.+..++|++.++..  .+...+++|++||.  ..+.|++|+.+++.+|++..+
T Consensus       208 ~~~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~  276 (440)
T 2z4s_A          208 GKT---------GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML  276 (440)
T ss_dssp             SCH---------HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred             CCh---------HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence            632         223333333    3445555555543222  11123788999996  789999999999999999988


Q ss_pred             hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316          357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG  436 (445)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a  436 (445)
                      ...       ++.    ++++++. .+...+      .+|.|++.++++++.......   .       ..||.+++.++
T Consensus       277 ~~~-------~~~----i~~e~l~-~la~~~------~gn~R~l~~~L~~~~~~a~~~---~-------~~It~~~~~~~  328 (440)
T 2z4s_A          277 EIE-------HGE----LPEEVLN-FVAENV------DDNLRRLRGAIIKLLVYKETT---G-------KEVDLKEAILL  328 (440)
T ss_dssp             HHH-------TCC----CCTTHHH-HHHHHC------CSCHHHHHHHHHHHHHHHHHS---S-------SCCCHHHHHHH
T ss_pred             HHc-------CCC----CCHHHHH-HHHHhc------CCCHHHHHHHHHHHHHHHHHh---C-------CCCCHHHHHHH
Confidence            653       122    3444555 444554      789999999999985543211   0       13666666665


Q ss_pred             HHH
Q 013316          437 LKL  439 (445)
Q Consensus       437 ~~~  439 (445)
                      ++.
T Consensus       329 l~~  331 (440)
T 2z4s_A          329 LKD  331 (440)
T ss_dssp             TST
T ss_pred             HHH
Confidence            543

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.69  E-value=7.2e-16  Score=146.43  Aligned_cols=183  Identities=25%  Similarity=0.261  Sum_probs=125.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++|++..++.+.+++.                .....+++|+||||||||++|+.+++.+.....  ...++.+++
T Consensus        19 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~   80 (323)
T 1sxj_B           19 VLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELNA   80 (323)
T ss_dssp             SGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEECT
T ss_pred             CHHHHHCCHHHHHHHHHHHH----------------cCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCCEEEecC
Confidence            35679999999998888653                123345999999999999999999998743110  114677776


Q ss_pred             ccccccccCCchhHHHHHHH----------HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEe
Q 013316          247 TDLVGEFVGHTGPKTRRRIK----------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA  314 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~----------~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a  314 (445)
                      ++..+      ...++..++          ..++.||||||+|.+..           ..++.|+..++.  ...++|++
T Consensus        81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~il~  143 (323)
T 1sxj_B           81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELYSNSTRFAFA  143 (323)
T ss_dssp             TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHTTTTEEEEEE
T ss_pred             ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhccCCCceEEEE
Confidence            65321      223333332          12357999999999875           456667777764  45666666


Q ss_pred             cCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          315 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ++...     ...+++++|+ ..+.|++|+.+++.+++...+.+..           ..++++++..+. ..+      .
T Consensus       144 ~~~~~-----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~-~~~------~  199 (323)
T 1sxj_B          144 CNQSN-----KIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLEAII-FTA------E  199 (323)
T ss_dssp             ESCGG-----GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHH-HHH------T
T ss_pred             eCChh-----hchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHc------C
Confidence            55432     2378899998 5899999999999999998886531           135566666444 444      5


Q ss_pred             cCchhhHHHHHHHH
Q 013316          395 MNGGLVDPMLVNAR  408 (445)
Q Consensus       395 ~n~r~l~~~~~~~~  408 (445)
                      ||.|.+.++++.+.
T Consensus       200 G~~r~a~~~l~~~~  213 (323)
T 1sxj_B          200 GDMRQAINNLQSTV  213 (323)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            77778888887763

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.68  E-value=2.3e-17  Score=143.56  Aligned_cols=159  Identities=16%  Similarity=0.253  Sum_probs=110.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~  243 (445)
                      .+++++|.+...+.+.+.+.                ...+.+++|+||||||||++|+.+++.+....   .....+++.
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~   83 (187)
T 2p65_A           20 KLDPVIGRDTEIRRAIQILS----------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS   83 (187)
T ss_dssp             CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred             ccchhhcchHHHHHHHHHHh----------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence            45679999987777766432                23467899999999999999999999985421   112336777


Q ss_pred             eecccccc--cccCCchhHHHHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          244 VQRTDLVG--EFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       244 ~~~~~l~~--~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++++.+..  .+.|.....+..++...    .+.+|||||+|.+.+.+....  ...++++.|...++.+.+++|++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~ii~~~~~  161 (187)
T 2p65_A           84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLARGELRCIGATTV  161 (187)
T ss_dssp             ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred             EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHhcCCeeEEEecCH
Confidence            77766542  23333344455555433    346999999999986543111  11244566667777888999999988


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCC
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFN  344 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~  344 (445)
                      .........++++++||. .+.++.|+
T Consensus       162 ~~~~~~~~~~~~l~~R~~-~i~i~~p~  187 (187)
T 2p65_A          162 SEYRQFIEKDKALERRFQ-QILVEQPS  187 (187)
T ss_dssp             HHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred             HHHHHHHhccHHHHHhcC-cccCCCCC
Confidence            776655666999999996 59999886

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.68  E-value=9.3e-17  Score=165.14  Aligned_cols=147  Identities=14%  Similarity=0.200  Sum_probs=99.4

Q ss_pred             HHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------------cEEEEEecCchhH
Q 013316          264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM  320 (445)
Q Consensus       264 ~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~~~  320 (445)
                      .+..+.+++|||||++.+.+           .+++.|++.|+++                       ++.+|++|++...
T Consensus       196 ~~~~a~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~  264 (604)
T 3k1j_A          196 MIHRAHKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV  264 (604)
T ss_dssp             HHHHTTTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred             eeeecCCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence            56778899999999999865           7788888888732                       4568888887654


Q ss_pred             HHHHhhCcccccccc---cceeCCCC---CHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH--HHhh-
Q 013316          321 KRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET--TEKQ-  391 (445)
Q Consensus       321 ~~~~~~~~~l~~R~~---~~i~~~~~---~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~-  391 (445)
                      ..   .+|+|++||.   ..+.|+..   +.+.+..+++.+..+...    .  .....++++++..++.+++  .++. 
T Consensus       265 ~~---l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~----~--~~~~~ls~eAl~~Li~~~~r~~g~r~  335 (604)
T 3k1j_A          265 DK---MHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKR----D--GKIPHFTKEAVEEIVREAQKRAGRKG  335 (604)
T ss_dssp             HH---SCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHH----H--CSSCCBBHHHHHHHHHHHHHTTCSTT
T ss_pred             hh---cCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhh----c--cCcccCCHHHHHHHHHHHhhhhcccc
Confidence            44   3999999996   45666554   355566666544433211    0  1234788899999988776  2221 


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      +.+.|.|++.++++.|...+..         +....|+.+|+.+|++.
T Consensus       336 ~l~~~~R~l~~llr~A~~~A~~---------~~~~~I~~edv~~A~~~  374 (604)
T 3k1j_A          336 HLTLRLRDLGGIVRAAGDIAVK---------KGKKYVEREDVIEAVKM  374 (604)
T ss_dssp             EEECCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHh---------cCcccccHHHHHHHHHh
Confidence            1245899999999988433221         12236889999888853

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.67  E-value=1.7e-15  Score=146.90  Aligned_cols=186  Identities=17%  Similarity=0.201  Sum_probs=127.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------  239 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~-------  239 (445)
                      .|++++|++..++.+.+.+..               ...+..++|+||||||||++|+.+++.+.........       
T Consensus        14 ~~~~~vg~~~~~~~L~~~l~~---------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~   78 (373)
T 1jr3_A           14 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN   78 (373)
T ss_dssp             STTTSCSCHHHHHHHHHHHHH---------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred             chhhccCcHHHHHHHHHHHHh---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence            356799999999888876542               2234568999999999999999999988653211111       


Q ss_pred             ----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHh
Q 013316          240 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  302 (445)
Q Consensus       240 ----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~  302 (445)
                                .++.++.+.-      .....++.+++.+       .+.||||||+|.+..           ..++.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~  141 (373)
T 1jr3_A           79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK  141 (373)
T ss_dssp             HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHH
T ss_pred             HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHH
Confidence                      1222222110      1123345555543       247999999999865           56778888


Q ss_pred             hccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316          303 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  380 (445)
Q Consensus       303 ~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~  380 (445)
                      .+++  ..+++|++++....     ..+.+++|+ ..+.|++|+.+++.+++..++.+..           ..++++++.
T Consensus       142 ~le~~~~~~~~Il~~~~~~~-----l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~a~~  204 (373)
T 1jr3_A          142 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ  204 (373)
T ss_dssp             HHHSCCSSEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHH
T ss_pred             HHhcCCCceEEEEEeCChHh-----CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence            8875  56677776654431     267888898 8999999999999999999887531           235566666


Q ss_pred             HHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316          381 ALIEKETTEKQRREMNGGLVDPMLVNAR  408 (445)
Q Consensus       381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~  408 (445)
                      .+. ..+      .||.|.+.++++++.
T Consensus       205 ~l~-~~~------~G~~r~~~~~l~~~~  225 (373)
T 1jr3_A          205 LLA-RAA------EGSLRDALSLTDQAI  225 (373)
T ss_dssp             HHH-HHS------SSCHHHHHHHHHHHH
T ss_pred             HHH-HHC------CCCHHHHHHHHHHHH
Confidence            443 444      678888888888874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.67  E-value=1.6e-16  Score=154.77  Aligned_cols=229  Identities=13%  Similarity=0.102  Sum_probs=144.3

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ++++|.+...+.+.+++....            ....+..++|+||||||||++|+.+++.+...... ..+++.+++..
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~------------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~   86 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLY------------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQ   86 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGG------------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHH------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCC
Confidence            458999988888877543221            12456789999999999999999999988542100 22677888664


Q ss_pred             ccc------c----------ccCCchhHHH-H---HHHHcc-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc---
Q 013316          249 LVG------E----------FVGHTGPKTR-R---RIKEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM---  304 (445)
Q Consensus       249 l~~------~----------~~g~~~~~~~-~---~~~~a~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~---  304 (445)
                      ...      .          ..|.+...+. .   .+.... +.||||||++.+.....       .+.+..|+..+   
T Consensus        87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~  159 (386)
T 2qby_A           87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV  159 (386)
T ss_dssp             HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc
Confidence            211      1          0122222222 2   222222 57999999999986431       14566666666   


Q ss_pred             cCCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHH
Q 013316          305 DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI  383 (445)
Q Consensus       305 ~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  383 (445)
                      ...++.+|++++..+...  ..++.+.+||. ..+.|++|+.+++.+++...+.+..        . ...++++++..+.
T Consensus       160 ~~~~~~~I~~~~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--------~-~~~~~~~~~~~l~  228 (386)
T 2qby_A          160 NKSKISFIGITNDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--------K-PGVLPDNVIKLCA  228 (386)
T ss_dssp             CC--EEEEEEESCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--------C-SSCSCHHHHHHHH
T ss_pred             CCCeEEEEEEECCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCHHHHHHHH
Confidence            456788888877654321  23678888986 5899999999999999998876421        0 2345666665444


Q ss_pred             HHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          384 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       384 ~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                       ..+.   ...||.|.+.++++.+......         ++...|+.+|+.+++..+.
T Consensus       229 -~~~~---~~~G~~r~~~~ll~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~  273 (386)
T 2qby_A          229 -ALAA---REHGDARRALDLLRVSGEIAER---------MKDTKVKEEYVYMAKEEIE  273 (386)
T ss_dssp             -HHHH---HTTCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHHH
T ss_pred             -HHHH---HhcCCHHHHHHHHHHHHHHHHh---------cCCCccCHHHHHHHHHHHh
Confidence             3331   1237888888888877433221         1223688888888776543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.67  E-value=1.4e-15  Score=148.37  Aligned_cols=226  Identities=17%  Similarity=0.197  Sum_probs=145.0

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCC--eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      ++++|.+...+.+.+++.....            ...+.  +++|+||||||||++++.++..+....   ...++.++|
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~------------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~   81 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLR------------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYING   81 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHH------------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEET
T ss_pred             CCCCChHHHHHHHHHHHHHHHc------------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeC
Confidence            3589999888888886654321            12334  899999999999999999999886431   226788887


Q ss_pred             ccccc------c---cc-------CCchhHHHH----HHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316          247 TDLVG------E---FV-------GHTGPKTRR----RIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  305 (445)
Q Consensus       247 ~~l~~------~---~~-------g~~~~~~~~----~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  305 (445)
                      +....      .   .+       |.....+.+    .+... .+.||||||+|.+.+           ..+..|+..++
T Consensus        82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~-----------~~~~~L~~~~~  150 (389)
T 1fnn_A           82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP-----------DILSTFIRLGQ  150 (389)
T ss_dssp             TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH-----------HHHHHHHHHTT
T ss_pred             ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch-----------HHHHHHHHHHH
Confidence            65321      0   11       112222222    22222 356999999999833           66777777775


Q ss_pred             C------CcEEEEEecCchhHHHHHhhCccccccccc-ceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316          306 G------GKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  378 (445)
Q Consensus       306 ~------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  378 (445)
                      .      .++.+|++++......  ..++.+.+||.. .+.|++|+.+++.+++...+.....         ...+++++
T Consensus       151 ~~~~~~~~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~---------~~~~~~~~  219 (389)
T 1fnn_A          151 EADKLGAFRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA---------EGSYSEDI  219 (389)
T ss_dssp             CHHHHSSCCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC---------TTSSCHHH
T ss_pred             hCCCCCcCCEEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC---------CCCCCHHH
Confidence            3      4677777766543322  237888889864 7999999999999999998864210         12466677


Q ss_pred             HHHHHHHHHHH--hhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          379 IAALIEKETTE--KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       379 l~~~~~~~~~~--~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      +..+....|..  .....||.|.+.++++.+.......         +...|+.+++.+++..+
T Consensus       220 ~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---------~~~~i~~~~v~~~~~~~  274 (389)
T 1fnn_A          220 LQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---------GRKHIAPEDVRKSSKEV  274 (389)
T ss_dssp             HHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---------TCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence            77555444300  0001588889999998875433211         12357777777776543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=1.1e-16  Score=126.96  Aligned_cols=87  Identities=26%  Similarity=0.402  Sum_probs=45.7

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++    |++++.+|..|.||||+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMA-NGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEA----GADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCccccccCCCcHHHH
Confidence            45555555555555555554443 3445555543 455555555555555555555553    44555555555555555


Q ss_pred             HHHcCCHHHHHHH
Q 013316           92 AAKNGCNEAAKLL  104 (445)
Q Consensus        92 A~~~g~~~~~~~L  104 (445)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            5555555555443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.66  E-value=3.1e-17  Score=147.27  Aligned_cols=112  Identities=20%  Similarity=0.203  Sum_probs=88.8

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      +.|++++..+ .|.||||+||..|+.++++.|+...+++++..+. .|+||||+|+..|+.+++++|+++    |++++.
T Consensus        94 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~  168 (222)
T 3ehr_A           94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKGYADIVQLLLAK----GARTDL  168 (222)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-TSCCHHHHHHHHTCHHHHHHHHHH----TCCSCC
T ss_pred             hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCcc
Confidence            4677888665 6999999999999999999888766999999997 799999999999999999999995    899999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEG  118 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g  118 (445)
                      +|..|.||||+|+..++.++++.|+..|+..+..+..+
T Consensus       169 ~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             CCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             ccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            99999999999999999999999999999988777654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=3.4e-16  Score=123.99  Aligned_cols=93  Identities=32%  Similarity=0.413  Sum_probs=83.3

Q ss_pred             cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 013316           40 LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGK  119 (445)
Q Consensus        40 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~  119 (445)
                      .+..+. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus        17 ~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~   91 (110)
T 2zgd_A           17 GSHMGS-DLGKKLLEAARAGQDDEVRILMAN----GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK   91 (110)
T ss_dssp             -----C-CHHHHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCC-ccchHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Confidence            344554 699999999999999999999995    889999999999999999999999999999999999999999999


Q ss_pred             ChhhhhhcCCCChHHHHHH
Q 013316          120 TPLDHLSNGPGSAKLRELL  138 (445)
Q Consensus       120 tpl~~~a~~~~~~~i~~~l  138 (445)
                      ||| ++|+..++.+++++|
T Consensus        92 tpl-~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           92 TAF-DISIDNGNEDLAEIL  109 (110)
T ss_dssp             CHH-HHHHHHTCHHHHHHH
T ss_pred             cHH-HHHHHcCCHHHHHHh
Confidence            999 788888999999876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.66  E-value=1.5e-17  Score=160.85  Aligned_cols=126  Identities=15%  Similarity=0.059  Sum_probs=102.4

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCC--cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc---cccccCCCC
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSL--LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE---LEAQNMYGE   86 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~---v~~~d~~g~   86 (445)
                      .+.||||+||..|+.++++.|+......  .+..+. .|.||||+||.+|+.++|++|+++    |++   .+..+.. .
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~----gad~~~~~i~~~~-~  164 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCEL----APTEIMAMIQAEN-Y  164 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHS----CTTTHHHHHSHHH-H
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc-CCCCHHHHHHHcCCHHHHHHHHhC----CCCccccccCCCC-C
Confidence            3569999999999999999888653211  112232 478999999999999999999996    544   2333333 8


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcc--cccCCCChhhhhhc-CCCChHHHHHHHhhhhh
Q 013316           87 TPLHMAAKNGCNEAAKLLLAHGAFIEA--KANEGKTPLDHLSN-GPGSAKLRELLLWHSEE  144 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~--~~~~g~tpl~~~a~-~~~~~~i~~~ll~~~~~  144 (445)
                      ||||+|+..|+.+++++|+++|++++.  .|..|.||| ++|+ ..++.+++++|++.++.
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL-~~Aa~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF-RWAAVGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHH-HHHHSTTCCHHHHHHHTTSHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHH-HHHHHHCCCHHHHHHHHhCCCc
Confidence            999999999999999999999999988  999999999 7777 99999999999987743

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.66  E-value=3.6e-16  Score=145.25  Aligned_cols=94  Identities=26%  Similarity=0.281  Sum_probs=88.2

Q ss_pred             CCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCc
Q 013316           11 SAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET   87 (445)
Q Consensus        11 ~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~t   87 (445)
                      ..|.||||+||..   |+.++++.|+.. |+++|.+|. .|+||||+|+..|+.+++++|+++    |++++.+|..|.|
T Consensus       167 ~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~----gad~~~~d~~g~t  240 (278)
T 1dcq_A          167 EPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTG-KGSTALHYCCLTDNAECLKLLLRG----KASIEIANESGET  240 (278)
T ss_dssp             STTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             cCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCccCCCCC
Confidence            4699999999999   899999988764 899999997 799999999999999999999995    8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCC
Q 013316           88 PLHMAAKNGCNEAAKLLLAHGAF  110 (445)
Q Consensus        88 pLh~A~~~g~~~~~~~Ll~~ga~  110 (445)
                      |||+|+..|+.+++++|+++|++
T Consensus       241 pL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          241 PLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999986

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.66  E-value=8.2e-17  Score=164.37  Aligned_cols=210  Identities=16%  Similarity=0.177  Sum_probs=126.1

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccccc-----CCchhHHHHHHHHccCcEEEEcCcccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV-----GHTGPKTRRRIKEAEGGILFVDEAYRL  281 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~~a~~~il~lDEid~l  281 (445)
                      .++||+||||||||++|+++|+.+.+.... ..  ...+++.+.+...     |.. ......+..|.++|+||||||++
T Consensus       328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~-~~--~~~~~~~l~~~~~~~~~~g~~-~~~~G~l~~A~~gil~IDEid~l  403 (595)
T 3f9v_A          328 IHILIIGDPGTAKSQMLQFISRVAPRAVYT-TG--KGSTAAGLTAAVVREKGTGEY-YLEAGALVLADGGIAVIDEIDKM  403 (595)
T ss_dssp             CCEEEEESSCCTHHHHHHSSSTTCSCEECC-CT--TCSTTTTSEEECSSGGGTSSC-SEEECHHHHHSSSEECCTTTTCC
T ss_pred             cceEEECCCchHHHHHHHHHHHhCCCceec-CC--Cccccccccceeeeccccccc-cccCCeeEecCCCcEEeehhhhC
Confidence            389999999999999999999887542110 00  0022223322211     111 01123556788999999999999


Q ss_pred             ccCCCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchh--HH------HHHhhCcccccccccce
Q 013316          282 IPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEP--MK------RVIASNEGFCRRVTKFF  338 (445)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~--~~------~~~~~~~~l~~R~~~~i  338 (445)
                      .+           +.++.|++.|+++.               +.+|+|+++..  ++      .-+..+++|++|||..+
T Consensus       404 ~~-----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~  472 (595)
T 3f9v_A          404 RD-----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIF  472 (595)
T ss_dssp             CS-----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCE
T ss_pred             CH-----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEE
Confidence            87           77888999888643               35777777642  00      00144799999998655


Q ss_pred             -eCCCCCHHHHHHHHHHHHhccccccccccc--------------ccCCcccHHHHHHHHHHHHH--------Hhhhccc
Q 013316          339 -HFNDFNSEELAKILHIKMNNQTEDSLLYGF--------------KLHSSCSMDAIAALIEKETT--------EKQRREM  395 (445)
Q Consensus       339 -~~~~~~~~~~~~il~~~l~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~--------~~~~~~~  395 (445)
                       ..+.|+.+ ...|+++.+...........+              .+.+.++.++...+...+..        ++...++
T Consensus       473 ~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~  551 (595)
T 3f9v_A          473 ILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILI  551 (595)
T ss_dssp             EECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCS
T ss_pred             EeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence             45555555 778888877654311000000              01223444444433333221        0013588


Q ss_pred             CchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          396 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       396 n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      +.|.+.+++..|...+..+.         ...|+.+|+.+|+.-+.
T Consensus       552 s~R~l~~lirla~a~A~l~~---------~~~V~~~dv~~Ai~l~~  588 (595)
T 3f9v_A          552 TPRQLEALIRISEAYAKMAL---------KAEVTREDAERAINIMR  588 (595)
T ss_dssp             STTTTTHHHHHHHHHHHTTS---------SCCSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence            99999999998855443322         23699999999997654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.64  E-value=4.5e-15  Score=142.07  Aligned_cols=181  Identities=20%  Similarity=0.254  Sum_probs=118.7

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++.+++.|...+.                .+..++++|+||||||||++|+++++.+.....  ...+..++.
T Consensus        23 ~~~~~~g~~~~~~~L~~~i~----------------~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~~   84 (340)
T 1sxj_C           23 TLDEVYGQNEVITTVRKFVD----------------EGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY--SNMVLELNA   84 (340)
T ss_dssp             SGGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH--HHHEEEECT
T ss_pred             cHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc--cceEEEEcC
Confidence            46678999998888887554                123346999999999999999999999854210  113566666


Q ss_pred             ccccccccCCchhHHHHHH---HH------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEec
Q 013316          247 TDLVGEFVGHTGPKTRRRI---KE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG  315 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~---~~------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~  315 (445)
                      ++..+      ...+++.+   .+      ....|++|||+|.+..           ..++.|+..++.  ....+|+++
T Consensus        85 ~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~il~~  147 (340)
T 1sxj_C           85 SDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYTKNTRFCVLA  147 (340)
T ss_dssp             TSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred             ccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcCCCCeEEEEEe
Confidence            54211      12223222   21      1358999999999875           566777777764  345555555


Q ss_pred             CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      +...     ...|++++|| ..+.|++++.+++.+++...+.+..           ..++++++. .+...++      |
T Consensus       148 n~~~-----~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~-----------~~i~~~~~~-~i~~~s~------G  203 (340)
T 1sxj_C          148 NYAH-----KLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEK-ALIELSN------G  203 (340)
T ss_dssp             SCGG-----GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHH-HHHHHHT------T
T ss_pred             cCcc-----ccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH-HHHHHcC------C
Confidence            4332     2378899998 5899999999999999998886531           134555655 4556663      4


Q ss_pred             CchhhHHHHHH
Q 013316          396 NGGLVDPMLVN  406 (445)
Q Consensus       396 n~r~l~~~~~~  406 (445)
                      +.|.+.++++.
T Consensus       204 ~~r~~~~~l~~  214 (340)
T 1sxj_C          204 DMRRVLNVLQS  214 (340)
T ss_dssp             CHHHHHHHTTT
T ss_pred             CHHHHHHHHHH
Confidence            44444444443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.63  E-value=2.1e-17  Score=159.76  Aligned_cols=122  Identities=12%  Similarity=0.083  Sum_probs=105.0

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCC---cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc--ccCCCC
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSL---LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA--QNMYGE   86 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~--~d~~g~   86 (445)
                      .|.||||+||..|+.++++.|+.. +++   .+..+.  ++||||+||..|+.++|++|+++    |++++.  .|..|.
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~--~~TpLh~Aa~~G~~eiv~~Ll~~----ga~~~~~~~d~~g~  199 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAE--NYHAFRLAAENGHLHVLNRLCEL----APTEATAMIQAENY  199 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHH--HHHHHHHHHHTTCHHHHHHHHHS----CGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCC--CCCHHHHHHHCCCHHHHHHHHHc----CCccchhccCCCCC
Confidence            578999999999999999988865 543   222222  27999999999999999999995    888877  888899


Q ss_pred             cHHHHHH-HcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           87 TPLHMAA-KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        87 tpLh~A~-~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      ||||+|+ ..|+.+++++|++.|++       |.||+ +.|+..++.+++++|++++++...+
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL-~~Aa~~g~~evv~lL~~~ga~~~~~  254 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPVM-------LAYAE-IHEFEYGEKYVNPFIARHVNRLKEM  254 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHH-HCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCCc-------cchHH-HHHHHCCCHHHHHHHHhcCcccccc
Confidence            9999999 99999999999998753       88999 8888999999999999999886554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.62  E-value=3.3e-16  Score=136.11  Aligned_cols=107  Identities=22%  Similarity=0.273  Sum_probs=96.6

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhh
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHL  125 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~  125 (445)
                      .|+||||+|+..|+.+++++|++     |++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||| |+
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL-~~  116 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL-HM  116 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHH-HH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHH-HH
Confidence            58899999999999999999998     57899999999999999999999999999999999999998 8999999 78


Q ss_pred             hcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          126 SNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       126 a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      |+..++.+++++|+++++++..++..+.++...+
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A  150 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELA  150 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHH
Confidence            8889999999999999998877766665555443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.62  E-value=8.2e-16  Score=148.07  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=93.0

Q ss_pred             CCccCccCCC---CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316            2 QKNQDRRSRS---AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL   78 (445)
Q Consensus         2 ~~~~~~~~~~---~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v   78 (445)
                      +.|++++..+   .|.||||+||..|+.++++.|+. .++++|..+. .|+||||+|+..|+.+++++|+++    |+++
T Consensus       221 ~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~-~G~TpLh~A~~~g~~~~v~~LL~~----Gad~  294 (368)
T 3jue_A          221 AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADS-AGRGPLHHATILGHTGLACLFLKR----GADL  294 (368)
T ss_dssp             HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCT
T ss_pred             HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHHC----cCCC
Confidence            4678888764   69999999999999999988775 5899999997 799999999999999999999995    8999


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CcccccCCCChh
Q 013316           79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF---IEAKANEGKTPL  122 (445)
Q Consensus        79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~---~~~~~~~g~tpl  122 (445)
                      +.+|..|.||||+|+..++.+++++|+..+..   ....+..+.|++
T Consensus       295 ~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l  341 (368)
T 3jue_A          295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYL  341 (368)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------
T ss_pred             CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence            99999999999999999999999999987643   345566677777

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.61  E-value=3e-15  Score=144.15  Aligned_cols=188  Identities=18%  Similarity=0.207  Sum_probs=119.1

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC-----------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----------  235 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~-----------  235 (445)
                      .|++++|++.+++.+.+++.               ......+++|+||||||||++|+++++.+..+..           
T Consensus        12 ~~~~~vg~~~~~~~l~~~~~---------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~   76 (354)
T 1sxj_E           12 SLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV   76 (354)
T ss_dssp             SGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred             CHHHhcCCHHHHHHHHHHHh---------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence            35779999998887776430               1223345999999999999999999997633211           


Q ss_pred             -----------CCCCCeEEeecccccccccCC-chhHHHHHHHHc-----------------cCcEEEEcCccccccCCC
Q 013316          236 -----------LPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-----------------EGGILFVDEAYRLIPMQK  286 (445)
Q Consensus       236 -----------~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a-----------------~~~il~lDEid~l~~~~~  286 (445)
                                 +....++.++.+..     +. ....+++.++..                 ++.||+|||++.+.+   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---  148 (354)
T 1sxj_E           77 TASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---  148 (354)
T ss_dssp             ---------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH---
T ss_pred             ccccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH---
Confidence                       00112333332211     11 111234433321                 345999999999754   


Q ss_pred             CCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccccccc
Q 013316          287 ADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSL  364 (445)
Q Consensus       287 ~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~  364 (445)
                              ..++.|++.+++  ....+|++++....     ..|++++|| ..+.|++|+.+++.++++..+.+.     
T Consensus       149 --------~~~~~L~~~le~~~~~~~~Il~t~~~~~-----l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~-----  209 (354)
T 1sxj_E          149 --------DAQAALRRTMEKYSKNIRLIMVCDSMSP-----IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNE-----  209 (354)
T ss_dssp             --------HHHHHHHHHHHHSTTTEEEEEEESCSCS-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH-----
T ss_pred             --------HHHHHHHHHHHhhcCCCEEEEEeCCHHH-----HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc-----
Confidence                    556667776653  34555555443221     267899999 899999999999999999888753     


Q ss_pred             ccccccCCccc-HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          365 LYGFKLHSSCS-MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       365 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                        ++    .++ ++++..+. ..+      .||.|.+.++++.+..
T Consensus       210 --~~----~~~~~~~l~~i~-~~~------~G~~r~a~~~l~~~~~  242 (354)
T 1sxj_E          210 --RI----QLETKDILKRIA-QAS------NGNLRVSLLMLESMAL  242 (354)
T ss_dssp             --TC----EECCSHHHHHHH-HHH------TTCHHHHHHHHTHHHH
T ss_pred             --CC----CCCcHHHHHHHH-HHc------CCCHHHHHHHHHHHHH
Confidence              12    234 45665443 444      6778888888887754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.60  E-value=6.1e-16  Score=140.95  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=108.8

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .+.++++.++..|+.+.+..+. ..+.++   +. .|.||||+|+..|+.+++++|++     |+++|.+|..|.||||+
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~-~~~~~~---~~-~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~   83 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSS-YIAADV---VS-EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLF   83 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGG-GSCHHH---HH-HHHHHHHHHHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHH
T ss_pred             CCccHHHHHHHcCCCccccccc-cccccc---cc-CCCCHHHHHHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHH
Confidence            4555666666666654443221 112222   22 48899999999999999999998     57899999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                      |+..|+.+++++|+++|++++.++ ..|+||| |+|+..++.+++++|+.+++++..++..+.++...
T Consensus        84 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~  150 (244)
T 3ui2_A           84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL-HMAAGYVRPEVVEALVELGADIEVEDERGLTALEL  150 (244)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            999999999999999999999998 8899999 78888999999999999999887776655555443

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.50  E-value=4.2e-13  Score=127.84  Aligned_cols=132  Identities=11%  Similarity=0.074  Sum_probs=91.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC-----------------CCCeEEeecccccccccCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE  267 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~  267 (445)
                      .+..+||+||||||||++|+++++.+.......                 ...+..+.+.+- +.  ......++.+++.
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~   99 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEK   99 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHH
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHH
Confidence            455699999999999999999999987533110                 012333332200 00  0122345666655


Q ss_pred             c-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccce
Q 013316          268 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF  338 (445)
Q Consensus       268 a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i  338 (445)
                      +       ...|++|||+|.+..           ++++.|++.+++  ...++|++++...     ...|++++|+ ..+
T Consensus       100 ~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep~~~~~~Il~t~~~~-----~l~~ti~SRc-~~~  162 (334)
T 1a5t_A          100 LNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPPAETWFFLATREPE-----RLLATLRSRC-RLH  162 (334)
T ss_dssp             TTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCCTTEEEEEEESCGG-----GSCHHHHTTS-EEE
T ss_pred             HhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHHhhcc-eee
Confidence            4       348999999999976           678899999987  3566666655432     2378999998 789


Q ss_pred             eCCCCCHHHHHHHHHHHH
Q 013316          339 HFNDFNSEELAKILHIKM  356 (445)
Q Consensus       339 ~~~~~~~~~~~~il~~~l  356 (445)
                      .|++|+.+++.+++....
T Consensus       163 ~~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          163 YLAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             ECCCCCHHHHHHHHHHHC
T ss_pred             eCCCCCHHHHHHHHHHhc
Confidence            999999999999887653

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.49  E-value=3.5e-14  Score=141.11  Aligned_cols=151  Identities=17%  Similarity=0.196  Sum_probs=96.0

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-  248 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~-  248 (445)
                      .++|++.+++.+...+.                  ...++||+||||||||++|+++|..+..     ..+|..+.+.- 
T Consensus        23 ~ivGq~~~i~~l~~al~------------------~~~~VLL~GpPGtGKT~LAraLa~~l~~-----~~~f~~~~~~~~   79 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAAL------------------SGESVFLLGPPGIAKSLIARRLKFAFQN-----ARAFEYLMTRFS   79 (500)
T ss_dssp             TCSSCHHHHHHHHHHHH------------------HTCEEEEECCSSSSHHHHHHHGGGGBSS-----CCEEEEECCTTC
T ss_pred             hhHHHHHHHHHHHHHHh------------------cCCeeEeecCchHHHHHHHHHHHHHHhh-----hhHHHHHHHhcC
Confidence            38999998877665322                  2359999999999999999999987643     22444444431 


Q ss_pred             ccccccCC-chhH--HHHHHHHc------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----------
Q 013316          249 LVGEFVGH-TGPK--TRRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-----------  308 (445)
Q Consensus       249 l~~~~~g~-~~~~--~~~~~~~a------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------  308 (445)
                      -.+.++|. ....  -...|..+      .++|||||||+.+.+           +.++.|+..|+++.           
T Consensus        80 t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i~G~~~~~~  148 (500)
T 3nbx_X           80 TPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRNGAHVEKIP  148 (500)
T ss_dssp             CHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEECSSSEEECC
T ss_pred             CHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccCCCCcCCcc
Confidence            11233332 1111  12334322      245899999987765           78889999997532           


Q ss_pred             -EEEEEecCchhHHHHHhhCcccccccccceeCCCCCH-HHHHHHHHHHH
Q 013316          309 -VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKM  356 (445)
Q Consensus       309 -~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~~l  356 (445)
                       .++|+||++.+..  ....+++++||...+.+|.|+. +++.+|+....
T Consensus       149 ~~~iI~ATN~lpe~--~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~  196 (500)
T 3nbx_X          149 MRLLVAASNELPEA--DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ  196 (500)
T ss_dssp             CCEEEEEESSCCCT--TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred             hhhhhhccccCCCc--cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence             2446666532211  0113588999989999999996 77888887644

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.47  E-value=3.3e-13  Score=126.29  Aligned_cols=143  Identities=11%  Similarity=0.044  Sum_probs=99.9

Q ss_pred             cchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 013316          173 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  252 (445)
Q Consensus       173 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~  252 (445)
                      |++++.+.|...++                .+..+++||+||||||||++|+++++.+..... ....+..+++++-   
T Consensus         1 g~~~~~~~L~~~i~----------------~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-~~~d~~~l~~~~~---   60 (305)
T 2gno_A            1 GAKDQLETLKRIIE----------------KSEGISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEGE---   60 (305)
T ss_dssp             ---CHHHHHHHHHH----------------TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSSS---
T ss_pred             ChHHHHHHHHHHHH----------------CCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc-cCCCEEEEcCCcC---
Confidence            56667777766543                123568999999999999999999987532111 2336777765421   


Q ss_pred             ccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHH
Q 013316          253 FVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV  323 (445)
Q Consensus       253 ~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~  323 (445)
                      .  ..-..++.+++.+       ...|+||||+|.+..           .+++.|++.|++  ...++|++++...    
T Consensus        61 ~--~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep~~~t~fIl~t~~~~----  123 (305)
T 2gno_A           61 N--IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEPPEYAVIVLNTRRWH----  123 (305)
T ss_dssp             C--BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSCCTTEEEEEEESCGG----
T ss_pred             C--CCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCCCCCeEEEEEECChH----
Confidence            0  1233466666655       247999999999976           678999999987  4566666654432    


Q ss_pred             HhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316          324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  356 (445)
Q Consensus       324 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l  356 (445)
                       ...|++++|   .++|++|+.+++.+.+...+
T Consensus       124 -kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A          124 -YLLPTIKSR---VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             -GSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred             -hChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence             237899999   99999999999999998765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.42  E-value=2e-12  Score=126.97  Aligned_cols=213  Identities=14%  Similarity=0.110  Sum_probs=124.3

Q ss_pred             hhhcchHHHHHHHHHH-HHhhhHHHHHHcCCCCCC--CCCCeeEe--ecCCCCchhHHHHHHHHHHHHcC--CCCCCCeE
Q 013316          170 NIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGA--RRPPHMAF--LGNPGTGKTMVARILGRLLYMVG--ILPTDRVT  242 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~~~~~vll--~Gp~GtGKt~~A~~la~~~~~~~--~~~~~~~~  242 (445)
                      .++|.+...+.|.+++ ....            ..  ..+..+++  +||||||||++|+.+++.+....  .-....++
T Consensus        23 ~l~gR~~el~~l~~~l~~~~~------------~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~   90 (412)
T 1w5s_A           23 ELRVRRGEAEALARIYLNRLL------------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA   90 (412)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHH------------TSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCChHHHHHHHHHHHhHHHh------------cCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence            4899998888887765 4331            01  24568899  99999999999999999875420  00011466


Q ss_pred             Eeecccc------cccc---c-------CCchhHH----HHHHHH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316          243 EVQRTDL------VGEF---V-------GHTGPKT----RRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  301 (445)
Q Consensus       243 ~~~~~~l------~~~~---~-------g~~~~~~----~~~~~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll  301 (445)
                      .+++...      ...+   +       |.+...+    ...+.. ..+.+|+|||+|.+...+.     ...+.+..++
T Consensus        91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~  165 (412)
T 1w5s_A           91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLL  165 (412)
T ss_dssp             EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHH
Confidence            6775331      1110   1       1112222    223332 2357999999999975311     0114444444


Q ss_pred             hhcc-----C--CcEEEEEecCchhHH-HHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCc
Q 013316          302 SVMD-----G--GKVVVIFAGYSEPMK-RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS  373 (445)
Q Consensus       302 ~~~~-----~--~~~~~i~a~~~~~~~-~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~  373 (445)
                      ..++     +  .++.+|++++..... .+....+.+.+||...+.|++++.++..+++...+....        . ...
T Consensus       166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--------~-~~~  236 (412)
T 1w5s_A          166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--------R-DTV  236 (412)
T ss_dssp             THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--------C-TTS
T ss_pred             HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--------C-CCC
Confidence            4443     3  577788776544332 221111667777766699999999999999998776421        0 123


Q ss_pred             ccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316          374 CSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  409 (445)
Q Consensus       374 ~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~  409 (445)
                      ++++.+. .+...+.......||.+.+..++..+..
T Consensus       237 ~~~~~~~-~i~~~~~~~~~~~G~p~~~~~l~~~a~~  271 (412)
T 1w5s_A          237 WEPRHLE-LISDVYGEDKGGDGSARRAIVALKMACE  271 (412)
T ss_dssp             CCHHHHH-HHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred             CChHHHH-HHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence            5555655 3434442110011888888888877643

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=99.27  E-value=1.4e-11  Score=119.07  Aligned_cols=234  Identities=17%  Similarity=0.108  Sum_probs=128.2

Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHH-HHHHHHcCCCCCCCeE
Q 013316          164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL-GRLLYMVGILPTDRVT  242 (445)
Q Consensus       164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~l-a~~~~~~~~~~~~~~~  242 (445)
                      +...+..|+|++.+|..|.-.+-.           -.-......|+||.|+||| ||++|+++ ++.+.+      ..|+
T Consensus       208 l~~sIapI~G~e~vK~aLll~L~G-----------G~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR------~~ft  269 (506)
T 3f8t_A          208 FARAIAPLPGAEEVGKMLALQLFS-----------CVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR------GVYV  269 (506)
T ss_dssp             HHHHHCCSTTCHHHHHHHHHHHTT-----------CCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS------EEEE
T ss_pred             HHHHhcccCCCHHHHHHHHHHHcC-----------CccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC------eEEe
Confidence            444555599999887666532110           0000123448999999999 99999999 776532      0121


Q ss_pred             Eeecc---cccccccCCch-hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013316          243 EVQRT---DLVGEFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------  307 (445)
Q Consensus       243 ~~~~~---~l~~~~~g~~~-~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------  307 (445)
                      ....+   .+.+...+.++ ..-...+..|.+||+|||||+.+.+           ..+..|++.|+++           
T Consensus       270 ~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~~lpa  338 (506)
T 3f8t_A          270 DLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGIALNA  338 (506)
T ss_dssp             EGGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTEEEEC
T ss_pred             cCCCCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCEEcCC
Confidence            11111   11111111011 0012356678999999999977765           8889999999864           


Q ss_pred             cEEEEEecCchhHH------HHHhhCcccccccccce-eCCCCCHHHH---------HHHHHHHHhcccccccccccccC
Q 013316          308 KVVVIFAGYSEPMK------RVIASNEGFCRRVTKFF-HFNDFNSEEL---------AKILHIKMNNQTEDSLLYGFKLH  371 (445)
Q Consensus       308 ~~~~i~a~~~~~~~------~~~~~~~~l~~R~~~~i-~~~~~~~~~~---------~~il~~~l~~~~~~~~~~~~~~~  371 (445)
                      ++.+|+|+|+...-      .-+...+++++|||..+ ....|+.++-         .+.+..++.....      ....
T Consensus       339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~------~~~~  412 (506)
T 3f8t_A          339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIR------EHPA  412 (506)
T ss_dssp             CCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHH------HCSC
T ss_pred             CeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHh------cCCC
Confidence            45778887776511      01234678999998654 4444443221         1122222221100      0123


Q ss_pred             CcccHHHHHHHHHHHHHH----h-------hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          372 SSCSMDAIAALIEKETTE----K-------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       372 ~~~~~~~l~~~~~~~~~~----~-------~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      +.+++++...+...+..-    +       ...+...|.+..++.-|...+..+.         ...|+.+|+.+|+.-+
T Consensus       413 p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g---------R~~V~~eDV~~Ai~L~  483 (506)
T 3f8t_A          413 PELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL---------SDDVEPEDVDIAAELV  483 (506)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT---------CSEECHHHHHHHHHHH
T ss_pred             ceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC---------cCCCCHHHHHHHHHHH
Confidence            556666555444332211    0       2234566888888877644433332         2379999999999754


Q ss_pred             H
Q 013316          441 L  441 (445)
Q Consensus       441 ~  441 (445)
                      .
T Consensus       484 ~  484 (506)
T 3f8t_A          484 D  484 (506)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.00  E-value=8.4e-10  Score=96.97  Aligned_cols=71  Identities=20%  Similarity=0.117  Sum_probs=48.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCcccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL  281 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid~l  281 (445)
                      +.+++|+||||||||++|++++..+...+    .+++.++++.+...+...    ........+.  ...+|||||++..
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~  127 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAKRN----VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE  127 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHTTT----CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence            37899999999999999999999987533    277778887765443211    1122222333  2359999999765


Q ss_pred             c
Q 013316          282 I  282 (445)
Q Consensus       282 ~  282 (445)
                      .
T Consensus       128 ~  128 (202)
T 2w58_A          128 A  128 (202)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.98  E-value=5.7e-10  Score=129.17  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=90.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-----------------
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-----------------  268 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-----------------  268 (445)
                      ..++||+||||||||++|+.+....      ....++.++++...      +...+.+.++..                 
T Consensus      1267 ~~~vLL~GPpGtGKT~la~~~l~~~------~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~ 1334 (2695)
T 4akg_A         1267 KRGIILCGPPGSGKTMIMNNALRNS------SLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSD 1334 (2695)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHSC------SSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhcC------CCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCC
Confidence            4689999999999999995554322      12256677776543      233344444321                 


Q ss_pred             -cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC--------CcEEEEEecCchhHHHHHhhCccccccccc
Q 013316          269 -EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTK  336 (445)
Q Consensus       269 -~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~  336 (445)
                       +.+||||||++.....+.  +.....+.+.+++..   .+.        .++.+|+|+++...---...+|+|.||| .
T Consensus      1335 gk~~VlFiDEinmp~~d~y--g~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~ 1411 (2695)
T 4akg_A         1335 IKNLVLFCDEINLPKLDKY--GSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-A 1411 (2695)
T ss_dssp             SSCEEEEEETTTCSCCCSS--SCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-E
T ss_pred             CceEEEEeccccccccccc--CchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-e
Confidence             126999999987554432  233344555555532   111        2478888887653000012389999999 8


Q ss_pred             ceeCCCCCHHHHHHHHHHHHhcc
Q 013316          337 FFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       337 ~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                      ++.++.|+.+++..|+..+++..
T Consensus      1412 vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A         1412 ILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp             EEECCCCTTTHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.88  E-value=4.1e-08  Score=93.65  Aligned_cols=158  Identities=16%  Similarity=0.117  Sum_probs=93.4

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      .++|.+...+.|.+++..                  ...++++||+|+|||++++.+++..+         ++.+++...
T Consensus        13 ~~~gR~~el~~L~~~l~~------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~---------~~~~~~~~~   65 (350)
T 2qen_A           13 DIFDREEESRKLEESLEN------------------YPLTLLLGIRRVGKSSLLRAFLNERP---------GILIDCREL   65 (350)
T ss_dssp             GSCSCHHHHHHHHHHHHH------------------CSEEEEECCTTSSHHHHHHHHHHHSS---------EEEEEHHHH
T ss_pred             hcCChHHHHHHHHHHHhc------------------CCeEEEECCCcCCHHHHHHHHHHHcC---------cEEEEeecc
Confidence            478888877777764321                  15899999999999999999987631         344443321


Q ss_pred             c------------c---ccc-----------------C-------CchhHHHHHHHH----ccCcEEEEcCccccccCCC
Q 013316          250 V------------G---EFV-----------------G-------HTGPKTRRRIKE----AEGGILFVDEAYRLIPMQK  286 (445)
Q Consensus       250 ~------------~---~~~-----------------g-------~~~~~~~~~~~~----a~~~il~lDEid~l~~~~~  286 (445)
                      .            .   ..+                 |       ..-..+...+..    ..+.+|+|||++.+.....
T Consensus        66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~  145 (350)
T 2qen_A           66 YAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS  145 (350)
T ss_dssp             HHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc
Confidence            1            0   000                 0       011112222221    1378999999999875110


Q ss_pred             CCCchhHHHHHHHHHhhccC-CcEEEEEecCchhH-HHH---HhhCcccccccccceeCCCCCHHHHHHHHHHHHhc
Q 013316          287 ADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN  358 (445)
Q Consensus       287 ~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~-~~~---~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~  358 (445)
                          ....+.+..|...++. ..+.+|++++.... ..+   .....++..|+...+.+++++.+|..+++...+..
T Consensus       146 ----~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~  218 (350)
T 2qen_A          146 ----RGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE  218 (350)
T ss_dssp             ----TTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             ----cchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence                0011333333333332 46777777665442 322   12234566676678999999999999999876654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.88  E-value=1.6e-09  Score=93.42  Aligned_cols=71  Identities=24%  Similarity=0.325  Sum_probs=45.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCcc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAY  279 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid  279 (445)
                      ...+++|+||||||||+++++++..+. ..+.    .++.++..++...+...    ........+  ....+|+|||++
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~  110 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI----RGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLG  110 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC----CCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCC
Confidence            356899999999999999999999986 3232    44556666554332210    111111112  256899999997


Q ss_pred             cc
Q 013316          280 RL  281 (445)
Q Consensus       280 ~l  281 (445)
                      ..
T Consensus       111 ~~  112 (180)
T 3ec2_A          111 SE  112 (180)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.86  E-value=3.9e-09  Score=87.78  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=45.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCcccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~  283 (445)
                      ....++|+||+|+|||+++++++..+...+    ..++.++..++...          . + ..+..+|+|||++.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g----~~~~~~~~~~~~~~----------~-~-~~~~~lLilDE~~~~~~   97 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG----KNAAYIDAASMPLT----------D-A-AFEAEYLAVDQVEKLGN   97 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTT----CCEEEEETTTSCCC----------G-G-GGGCSEEEEESTTCCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEcHHHhhHH----------H-H-HhCCCEEEEeCccccCh
Confidence            345799999999999999999999886422    14666776665432          1 1 12468999999988654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=98.86  E-value=7.7e-09  Score=115.01  Aligned_cols=149  Identities=13%  Similarity=0.151  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHhhhHHHH--------HHcCCC---------------CC-CCCCCe--eEeecCC
Q 013316          162 DELENELSNIVGLHELKIQLRKWAKGMLLDERR--------KALGLK---------------VG-ARRPPH--MAFLGNP  215 (445)
Q Consensus       162 ~~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~--------~~~~~~---------------~~-~~~~~~--vll~Gp~  215 (445)
                      .+....|+++.|.+++|+.+.+.+.... ....        ++.+..               ++ ...|.+  +++||||
T Consensus      1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A         1013 SASGSSTGSMSAIDENKQKALAAALGQI-EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp             -----------CTTHHHHHHHHHHHHHH-HHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred             ccCCceeeecCCccHHHHHHHHHHHHHH-hhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCC
Confidence            3455789999999999998877544322 1110        111111               11 224444  9999999


Q ss_pred             CCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc------------ccccCC----chhHHHHHHH---HccCcEEEEc
Q 013316          216 GTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV------------GEFVGH----TGPKTRRRIK---EAEGGILFVD  276 (445)
Q Consensus       216 GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~------------~~~~g~----~~~~~~~~~~---~a~~~il~lD  276 (445)
                      |||||++|++++.+....+    ++.+.++.....            ++|+++    +++.++.++.   +...+++|+|
T Consensus      1092 g~GKT~la~~~~~~~~~~g----~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d 1167 (1706)
T 3cmw_A         1092 SSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 1167 (1706)
T ss_dssp             TSSHHHHHHHHHHHHHHTT----CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEES
T ss_pred             CCChHHHHHHHHHHhhhcC----CceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeC
Confidence            9999999999999887642    255555555422            556676    6777777776   4456999999


Q ss_pred             CccccccCCC---C-C--CchhHHHHHHHHHhhccC----CcEEEEEec
Q 013316          277 EAYRLIPMQK---A-D--DKDYGIEALEEIMSVMDG----GKVVVIFAG  315 (445)
Q Consensus       277 Eid~l~~~~~---~-~--~~~~~~~~~~~ll~~~~~----~~~~~i~a~  315 (445)
                      |+++|.+.+.   . +  +.....+.+++++..|+.    .++++|+++
T Consensus      1168 ~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n 1216 (1706)
T 3cmw_A         1168 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1216 (1706)
T ss_dssp             CGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             chHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEec
Confidence            9999999742   1 1  123445667888888876    788887554

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.78  E-value=1.3e-07  Score=90.26  Aligned_cols=138  Identities=17%  Similarity=0.196  Sum_probs=82.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc--------------------------------cccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--------------------------------GEFV  254 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~--------------------------------~~~~  254 (445)
                      ..++++||+|+|||++++.+++....       .++.+++....                                ..+.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~  103 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQ  103 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTST
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCC-------CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccc
Confidence            48999999999999999999987643       34445543210                                0000


Q ss_pred             -----------------CCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEec
Q 013316          255 -----------------GHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG  315 (445)
Q Consensus       255 -----------------g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~  315 (445)
                                       ...-..+...+.+.  .+.+|+|||++.+....+   .+. ...+..+....  ..+.+|+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~---~~~-~~~l~~~~~~~--~~~~~i~~g  177 (357)
T 2fna_A          104 GIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG---VNL-LPALAYAYDNL--KRIKFIMSG  177 (357)
T ss_dssp             TEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT---CCC-HHHHHHHHHHC--TTEEEEEEE
T ss_pred             eEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc---hhH-HHHHHHHHHcC--CCeEEEEEc
Confidence                             00111222333332  367999999999875211   111 12233333221  356677776


Q ss_pred             CchhH-HHH---HhhCcccccccccceeCCCCCHHHHHHHHHHHHh
Q 013316          316 YSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN  357 (445)
Q Consensus       316 ~~~~~-~~~---~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~  357 (445)
                      +.... ..+   .....++..|+...+.+++++.+|..+++...+.
T Consensus       178 ~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~  223 (357)
T 2fna_A          178 SEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ  223 (357)
T ss_dssp             SSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence            65442 222   1223446667667899999999999999987664

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=98.76  E-value=3.8e-08  Score=93.88  Aligned_cols=181  Identities=10%  Similarity=-0.016  Sum_probs=114.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDE  277 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDE  277 (445)
                      .++..||+||+|+||++.++.+++.+...+.   .++..+.       +-|  ...++++++.+       ...|++|||
T Consensus        17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~---~~~~~~~-------~~~--~~~~~~l~~~~~~~plf~~~kvvii~~   84 (343)
T 1jr3_D           17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGF---EEHHTFS-------IDP--NTDWNAIFSLCQAMSLFASRQTLLLLL   84 (343)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHHHHHHTC---CEEEEEE-------CCT--TCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHHHHHhCCC---CeeEEEE-------ecC--CCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence            4568999999999999999999998764321   0111111       111  12334444333       457999999


Q ss_pred             ccc-cccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHH
Q 013316          278 AYR-LIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH  353 (445)
Q Consensus       278 id~-l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~  353 (445)
                      +|. +..           ..++.|+..+++   +.++++.+++.+..+.....-+++.+|+ .++.|.+++.+++...++
T Consensus        85 ~~~kl~~-----------~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~  152 (343)
T 1jr3_D           85 PENGPNA-----------AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA  152 (343)
T ss_dssp             CSSCCCT-----------THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred             CCCCCCh-----------HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence            988 754           456778877775   4455555554332110001136678887 889999999999999999


Q ss_pred             HHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHH
Q 013316          354 IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDL  433 (445)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  433 (445)
                      ..+++..           ..++++++..+. ..+      .+|.+.+.+.+++..-..         . +  ..||.+||
T Consensus       153 ~~~~~~g-----------~~i~~~a~~~l~-~~~------~gdl~~~~~elekl~l~~---------~-~--~~It~e~V  202 (343)
T 1jr3_D          153 ARAKQLN-----------LELDDAANQVLC-YCY------EGNLLALAQALERLSLLW---------P-D--GKLTLPRV  202 (343)
T ss_dssp             HHHHHTT-----------CEECHHHHHHHH-HSS------TTCHHHHHHHHHHHHHHC---------T-T--CEECHHHH
T ss_pred             HHHHHcC-----------CCCCHHHHHHHH-HHh------chHHHHHHHHHHHHHHhc---------C-C--CCCCHHHH
Confidence            8887642           245667776444 444      567777777787762211         0 1  15788887


Q ss_pred             HHHHHH
Q 013316          434 EAGLKL  439 (445)
Q Consensus       434 ~~a~~~  439 (445)
                      .+.+..
T Consensus       203 ~~~~~~  208 (343)
T 1jr3_D          203 EQAVND  208 (343)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            766553

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.72  E-value=1.7e-08  Score=94.58  Aligned_cols=73  Identities=14%  Similarity=0.195  Sum_probs=48.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccCC-chhHHHHHHHH-ccCcEEEEcCccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKE-AEGGILFVDEAYRLI  282 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~-a~~~il~lDEid~l~  282 (445)
                      ..+++|+||||||||++|++++..+. ..+.    ++..++++++...+.+. ........+.. ....+|||||++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~----~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~  227 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV----STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQ  227 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC----CEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCC----cEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence            57999999999999999999999988 6443    67778877766544332 11111111211 234699999996654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.63  E-value=5.9e-08  Score=84.50  Aligned_cols=128  Identities=18%  Similarity=0.146  Sum_probs=70.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCC-CCC-CCeEEeeccccccccc----------CC-----chhHHHHHH--
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPT-DRVTEVQRTDLVGEFV----------GH-----TGPKTRRRI--  265 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~-~~~-~~~~~~~~~~l~~~~~----------g~-----~~~~~~~~~--  265 (445)
                      .+...+++|+||||||++|..........+. -.. .+++..+..++...++          ..     ........+  
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~   83 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK   83 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence            3457889999999999999776544321000 001 2444444444432221          11     112333332  


Q ss_pred             HHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCcccccccccceeCCC
Q 013316          266 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND  342 (445)
Q Consensus       266 ~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~  342 (445)
                      ...+++||+|||++.+.+.+.... +.    . .++..++.   ..+.+|+.|.+..     ..+.+++.|++..+++++
T Consensus        84 ~~~~~~vliIDEAq~l~~~~~~~~-e~----~-rll~~l~~~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~  152 (199)
T 2r2a_A           84 PENIGSIVIVDEAQDVWPARSAGS-KI----P-ENVQWLNTHRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIAS  152 (199)
T ss_dssp             GGGTTCEEEETTGGGTSBCCCTTC-CC----C-HHHHGGGGTTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEE
T ss_pred             cccCceEEEEEChhhhccCccccc-hh----H-HHHHHHHhcCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcC
Confidence            223489999999999976553211 11    1 24444432   3345555555421     237779999988888877


Q ss_pred             C
Q 013316          343 F  343 (445)
Q Consensus       343 ~  343 (445)
                      +
T Consensus       153 ~  153 (199)
T 2r2a_A          153 N  153 (199)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.55  E-value=6.1e-08  Score=83.47  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+++|+||||||||++|.++++.+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999999874

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.48  E-value=8.9e-08  Score=86.43  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..+++|+||||||||++|++||+.+
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhh
Confidence            4579999999999999999999864

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.44  E-value=9.8e-07  Score=103.29  Aligned_cols=140  Identities=16%  Similarity=0.144  Sum_probs=84.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH---------------cc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE---------------AE  269 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~---------------a~  269 (445)
                      ...++||+||||||||++++.+...+      ...+++.++++.-.      +...+.+.++.               +.
T Consensus      1303 ~~~pvLL~GptGtGKT~li~~~L~~l------~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~ 1370 (3245)
T 3vkg_A         1303 EHRPLILCGPPGSGKTMTLTSTLRAF------PDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPT 1370 (3245)
T ss_dssp             TTCCCEEESSTTSSHHHHHHHHGGGC------TTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEES
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhC------CCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCC
Confidence            34689999999999997765432211      11256677776532      23333344431               10


Q ss_pred             --C--cEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC--------CcEEEEEecCchhHHHHHhhCccccccc
Q 013316          270 --G--GILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRV  334 (445)
Q Consensus       270 --~--~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~~~~i~a~~~~~~~~~~~~~~~l~~R~  334 (445)
                        |  .|+||||++.-.+...  +.....+.+.+++..   .+.        .++.+|+|.++....--...+|+|.|||
T Consensus      1371 ~~Gk~~VlFiDDiNmp~~D~y--GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A         1371 QLGKWLVVFCDEINLPSTDKY--GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp             STTCEEEEEETTTTCCCCCTT--SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred             cCCceEEEEecccCCCCcccc--ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence              2  5999999986544322  222333455554432   111        2456777766542111112378899999


Q ss_pred             ccceeCCCCCHHHHHHHHHHHHhcc
Q 013316          335 TKFFHFNDFNSEELAKILHIKMNNQ  359 (445)
Q Consensus       335 ~~~i~~~~~~~~~~~~il~~~l~~~  359 (445)
                       ..+.++.|+.+++..|+..++...
T Consensus      1449 -~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A         1449 -PILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp             -CEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             -eEEEeCCCCHHHHHHHHHHHHHHH
Confidence             779999999999999998876643

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.43  E-value=4.6e-07  Score=83.78  Aligned_cols=104  Identities=16%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHH---HHHHHccCcEEEEcCcccccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~---~~~~~a~~~il~lDEid~l~~  283 (445)
                      ..++|+||||||||++|..++...+.     ...|+....++..+.+....+..+.   +.+.+..  +||||+++.+.+
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~  196 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG  196 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence            35789999999999999999987322     1134444212222222222222222   2333333  999999999976


Q ss_pred             CCCCCC-----chhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          284 MQKADD-----KDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       284 ~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ....++     .....+.+..|...+....+.+|+++++
T Consensus       197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp  235 (331)
T 2vhj_A          197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP  235 (331)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence            443211     1223455555655555555667776653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.41  E-value=2.6e-07  Score=107.35  Aligned_cols=121  Identities=19%  Similarity=0.156  Sum_probs=83.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc--cCcEEEEcCccccccC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM  284 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~  284 (445)
                      .+.++.||+|||||++++.+|+.+++       +++.++|++-.      ....+.++|..+  .|+.+++|||+++.+ 
T Consensus       646 ~~~~l~GpaGtGKTe~vk~LA~~lg~-------~~v~~nc~e~l------d~~~lg~~~~g~~~~Gaw~~~DE~nr~~~-  711 (2695)
T 4akg_A          646 YGGCFFGPAGTGKTETVKAFGQNLGR-------VVVVFNCDDSF------DYQVLSRLLVGITQIGAWGCFDEFNRLDE-  711 (2695)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHTTTC-------CCEEEETTSSC------CHHHHHHHHHHHHHHTCEEEEETTTSSCH-
T ss_pred             CCCcccCCCCCCcHHHHHHHHHHhCC-------cEEEEECCCCC------ChhHhhHHHHHHHhcCCEeeehhhhhcCh-
Confidence            47889999999999999999999988       89999998643      334455666544  479999999988876 


Q ss_pred             CCCCCchhHHHHHHHH-------HhhccC---------------CcEEEEEecCchhHHHHHhhCcccccccccceeCCC
Q 013316          285 QKADDKDYGIEALEEI-------MSVMDG---------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND  342 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~l-------l~~~~~---------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~  342 (445)
                                ++++.+       ...+.+               ....++++.++. +..-....++|++|| +.+.+..
T Consensus       712 ----------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg-y~g~~eLP~~Lk~~F-r~v~m~~  779 (2695)
T 4akg_A          712 ----------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG-YNGRSELPENLKKSF-REFSMKS  779 (2695)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC-SSSSCCCCHHHHTTE-EEEECCC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC-ccCcccccHHHHhhe-EEEEeeC
Confidence                      333333       222211               112344444432 221112246788899 8899999


Q ss_pred             CCHHHHHHHHH
Q 013316          343 FNSEELAKILH  353 (445)
Q Consensus       343 ~~~~~~~~il~  353 (445)
                      |+.+.+.+|+-
T Consensus       780 Pd~~~i~ei~l  790 (2695)
T 4akg_A          780 PQSGTIAEMIL  790 (2695)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999988864

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.33  E-value=3.2e-06  Score=72.18  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=22.2

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .+.|.||+|+||||+++.|+..+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999885

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.12  E-value=5.6e-06  Score=93.49  Aligned_cols=109  Identities=12%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccC------------Cchh---HHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVG------------HTGP---KTRR  263 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g------------~~~~---~~~~  263 (445)
                      ..+..+++|+||||||||++|.+++......+.    .+..++.....    .+..|            ..+.   .++.
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~----~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH
Confidence            346778999999999999999999998776432    45555544321    12223            1122   2233


Q ss_pred             HHHHccCcEEEEcCccccccCCC----CCCchh--HHHH----HHHHHhhccCCcEEEEEec
Q 013316          264 RIKEAEGGILFVDEAYRLIPMQK----ADDKDY--GIEA----LEEIMSVMDGGKVVVIFAG  315 (445)
Q Consensus       264 ~~~~a~~~il~lDEid~l~~~~~----~~~~~~--~~~~----~~~ll~~~~~~~~~~i~a~  315 (445)
                      +.++....+|||||++.+.+.+.    .++..+  ..+.    +.+|........+++|+++
T Consensus      1500 lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A         1500 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp             HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence            44456779999999999987431    111122  2233    4444444455667776664

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.08  E-value=3e-06  Score=72.82  Aligned_cols=25  Identities=16%  Similarity=0.028  Sum_probs=19.7

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .-.+++||+|+|||+++..++..+.
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3577899999999999966665553

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.00  E-value=1.1e-05  Score=94.67  Aligned_cols=121  Identities=17%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc--cCcEEEEcCccccccC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM  284 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~  284 (445)
                      .+..+.||+|||||.+++.+|+.+++       +++.++|++-.      ....+.++|.-+  .|+..++|||+++.. 
T Consensus       605 ~gg~~~GPaGtGKTet~k~La~~lgr-------~~~vfnC~~~~------d~~~~g~i~~G~~~~GaW~cfDEfNrl~~-  670 (3245)
T 3vkg_A          605 MGGNPFGPAGTGKTETVKALGSQLGR-------FVLVFCCDEGF------DLQAMSRIFVGLCQCGAWGCFDEFNRLEE-  670 (3245)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEECSSCC------CHHHHHHHHHHHHHHTCEEEEETTTSSCH-
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhCC-------eEEEEeCCCCC------CHHHHHHHHhhHhhcCcEEEehhhhcCCH-
Confidence            35678999999999999999999998       89999998643      223334444332  578999999988865 


Q ss_pred             CCCCCchhHHHHHHHHHhhcc-----------------C------CcEEEEEecCchhHHHHHhhCcccccccccceeCC
Q 013316          285 QKADDKDYGIEALEEIMSVMD-----------------G------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN  341 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~-----------------~------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~  341 (445)
                                ++++.+.+.+.                 +      ....++++.++ .+.--....+.|+.|| +.+.++
T Consensus       671 ----------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lF-r~v~m~  738 (3245)
T 3vkg_A          671 ----------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLF-RSMAMI  738 (3245)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTE-EEEECC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhc-EEEEEe
Confidence                      33333332221                 1      12344444443 2321123356788899 889999


Q ss_pred             CCCHHHHHHHHH
Q 013316          342 DFNSEELAKILH  353 (445)
Q Consensus       342 ~~~~~~~~~il~  353 (445)
                      .||.+.+.+|+-
T Consensus       739 ~Pd~~~i~ei~L  750 (3245)
T 3vkg_A          739 KPDREMIAQVML  750 (3245)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            999999999863

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.86  E-value=3.4e-05  Score=78.22  Aligned_cols=93  Identities=24%  Similarity=0.368  Sum_probs=57.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc----cccccCCchhHHHHHHHH------------cc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL----VGEFVGHTGPKTRRRIKE------------AE  269 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l----~~~~~g~~~~~~~~~~~~------------a~  269 (445)
                      ...+++.||||||||++++.+...+...+.    .+..+.++.-    ..+..|.....+.+.+..            ..
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~----~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~  279 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGL----EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAP  279 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTC----CEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC----eEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhccccc
Confidence            468999999999999999999998876442    4544433321    111122222223333311            13


Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-cEEEEE
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIF  313 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~  313 (445)
                      ..+|+|||+..+..           ..+..|+..+..+ ++++++
T Consensus       280 ~dvlIIDEasml~~-----------~~~~~Ll~~~~~~~~lilvG  313 (574)
T 3e1s_A          280 YDLLIVDEVSMMGD-----------ALMLSLLAAVPPGARVLLVG  313 (574)
T ss_dssp             CSEEEECCGGGCCH-----------HHHHHHHTTSCTTCEEEEEE
T ss_pred             CCEEEEcCccCCCH-----------HHHHHHHHhCcCCCEEEEEe
Confidence            47999999976654           6677788877654 444444

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.85  E-value=8.6e-05  Score=73.45  Aligned_cols=93  Identities=18%  Similarity=0.243  Sum_probs=56.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc----cccccCCchhHHHHHHHH---------------
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL----VGEFVGHTGPKTRRRIKE---------------  267 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l----~~~~~g~~~~~~~~~~~~---------------  267 (445)
                      .++++.|+||||||++++.++..+...+.   ..+..+..+.-    +....|.....+.+.+..               
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~  122 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEALISTGE---TGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKE  122 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTC---CCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCC---ceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccc
Confidence            48999999999999999999998876432   13444433321    111122222223333321               


Q ss_pred             ----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEE
Q 013316          268 ----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIF  313 (445)
Q Consensus       268 ----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~  313 (445)
                          ....+|++||+..+..           ..+..|+..+.. .++++++
T Consensus       123 ~~~~~~~~~iiiDE~~~~~~-----------~~~~~l~~~~~~~~~~~~vG  162 (459)
T 3upu_A          123 VPDLAKCRVLICDEVSMYDR-----------KLFKILLSTIPPWCTIIGIG  162 (459)
T ss_dssp             CCCCSSCSEEEESCGGGCCH-----------HHHHHHHHHSCTTCEEEEEE
T ss_pred             cccccCCCEEEEECchhCCH-----------HHHHHHHHhccCCCEEEEEC
Confidence                1347999999976654           566777777764 3444444

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.79  E-value=8.3e-05  Score=65.56  Aligned_cols=28  Identities=18%  Similarity=-0.191  Sum_probs=22.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .-++++||+|+||||++..++..+...+
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g   40 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYAD   40 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence            3567789999999999988888776543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.70  E-value=0.0012  Score=64.07  Aligned_cols=30  Identities=30%  Similarity=0.380  Sum_probs=25.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      ++..++|.||+|+||||++..+|..+...+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G  125 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG  125 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            455688999999999999999999887643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.69  E-value=4.5e-05  Score=70.98  Aligned_cols=98  Identities=17%  Similarity=0.251  Sum_probs=51.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCchhHHHHHHHHccCcEEEEcCccccccCC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ  285 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~  285 (445)
                      ..+++.||+|+|||++|+.||+.++.       .++..+.-.+... .+| +.+..........  -.|+|..+-...  
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~-------~iis~Ds~qvy~~~~ig-Takp~~~e~~gvp--h~lid~~~~~~~--   73 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPC-------ELISVDSALIYRGMDIG-TAKPSRELLARYP--HRLIDIRDPAES--   73 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCE-------EEEEECTTTTBTTCCTT-TTCCCHHHHHHSC--EETSSCBCTTSC--
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC-------cEEeccchhhhcCCCcc-cCCCCHHHHcCCC--EEEeeccCcccc--
Confidence            46889999999999999999998754       5555543322211 112 2222222222222  355665543321  


Q ss_pred             CCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          286 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       286 ~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                       .+..++...+...+-.....+++++++.++.
T Consensus        74 -~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~  104 (323)
T 3crm_A           74 -YSAAEFRADALAAMAKATARGRIPLLVGGTM  104 (323)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             -cCHHHHHHHHHHHHHHHHHcCCeEEEECCch
Confidence             1113343344444444555677666666553

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=97.67  E-value=5.9e-05  Score=54.60  Aligned_cols=75  Identities=21%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCC
Q 013316          341 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL  420 (445)
Q Consensus       341 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~  420 (445)
                      |.|+.++|.+||+.++++.         .+..+++.+.++..+.+++         |+++.+++..|......+      
T Consensus         1 plPd~~~R~~Il~~~l~~~---------~~~~~~dl~~la~~t~G~S---------GADi~~l~~eA~~~a~~~------   56 (78)
T 3kw6_A            1 PPPNEEARLDILKIHSRKM---------NLTRGINLRKIAELMPGAS---------GAEVKGVCTEAGMYALRE------   56 (78)
T ss_dssp             CCCCHHHHHHHHHHHHTTS---------EECTTCCHHHHHHTCTTCC---------HHHHHHHHHHHHHHHHHT------
T ss_pred             CcCCHHHHHHHHHHHhcCC---------CCCCccCHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHh------
Confidence            6899999999999999875         4456777778776665555         777788887774333222      


Q ss_pred             ChhhhhhccHHHHHHHHHHHHh
Q 013316          421 DTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       421 ~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                         +...|+.+||.+|++++..
T Consensus        57 ---~~~~i~~~d~~~Al~~v~~   75 (78)
T 3kw6_A           57 ---RRVHVTQEDFEMAVAKVMQ   75 (78)
T ss_dssp             ---TCSEECHHHHHHHHHHHHC
T ss_pred             ---CCCCCCHHHHHHHHHHHHh
Confidence               2347999999999998764

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=97.66  E-value=3.4e-05  Score=56.95  Aligned_cols=77  Identities=22%  Similarity=0.237  Sum_probs=57.2

Q ss_pred             eCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccC
Q 013316          339 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD  418 (445)
Q Consensus       339 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~  418 (445)
                      .-.+||.++|.+||+.++++.         .+.++++.+.++..+.+++         |+++.+++..|......+.   
T Consensus         7 ~~~~Pd~~~R~~IL~~~l~~~---------~l~~dvdl~~LA~~T~G~S---------GADL~~l~~eAa~~alr~~---   65 (86)
T 2krk_A            7 HHSHPNEEARLDILKIHSRKM---------NLTRGINLRKIAELMPGAS---------GAEVKGVCTEAGMYALRER---   65 (86)
T ss_dssp             CCCCCCHHHHHHHHHHHTTTS---------EECTTCCCHHHHHTCSSCC---------HHHHHHHHHHHHHHHHHTT---
T ss_pred             CCCCcCHHHHHHHHHHHHcCC---------CCCcccCHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHHc---
Confidence            457899999999999999875         4456777777776665555         7777888877733322211   


Q ss_pred             CCChhhhhhccHHHHHHHHHHHHh
Q 013316          419 CLDTDELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       419 ~~~~~~~~~i~~~d~~~a~~~~~~  442 (445)
                            ...|+.+||.+|++.+.|
T Consensus        66 ------~~~I~~~df~~Al~~v~p   83 (86)
T 2krk_A           66 ------RVHVTQEDFEMAVAKVMQ   83 (86)
T ss_dssp             ------CSEECHHHHHHHHHHHHC
T ss_pred             ------CCCCCHHHHHHHHHHHcc
Confidence                  247999999999999876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.62  E-value=0.002  Score=62.59  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=25.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      +|..+++.|++|+||||++..+|..+...+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G  128 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG  128 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence            456788999999999999999999887643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.57  E-value=3.1e-05  Score=65.85  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +..++|.|+||+||||+|+.+++.++.       +++.++...+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~-------~~~~~~~D~~   39 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPE-------PWLAFGVDSL   39 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS-------CEEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEeccchH
Confidence            356899999999999999999998765       6776655444

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.54  E-value=0.00035  Score=61.93  Aligned_cols=27  Identities=30%  Similarity=0.344  Sum_probs=22.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....++|+||||+|||++++.++..+.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            345688999999999999999997664

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.38  E-value=8.3e-05  Score=63.64  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=24.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..++|.||||+||||+|+.+++.++.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~   31 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKR   31 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457999999999999999999998865

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.36  E-value=0.00063  Score=64.75  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccCC-----------chhHHHHHHH---
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH-----------TGPKTRRRIK---  266 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~----~~g~-----------~~~~~~~~~~---  266 (445)
                      +...++|+||||+|||++|..++......+    .+++.++...-...    -+|.           +...+...++   
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~  148 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV  148 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCC----CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence            344688999999999999999988775432    24555554431111    1111           2222223332   


Q ss_pred             -HccCcEEEEcCccccccC
Q 013316          267 -EAEGGILFVDEAYRLIPM  284 (445)
Q Consensus       267 -~a~~~il~lDEid~l~~~  284 (445)
                       .....+|+||.+..+.+.
T Consensus       149 ~~~~~~lVVIDsl~~l~~~  167 (366)
T 1xp8_A          149 RSGAIDVVVVDSVAALTPR  167 (366)
T ss_dssp             TTTCCSEEEEECTTTCCCS
T ss_pred             hcCCCCEEEEeChHHhccc
Confidence             234589999999999863

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.36  E-value=0.0001  Score=63.97  Aligned_cols=29  Identities=24%  Similarity=0.371  Sum_probs=25.1

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+...++|.||||+||||+|+.|++.++.
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~   51 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV   51 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            34568999999999999999999999865

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.34  E-value=0.00046  Score=61.67  Aligned_cols=23  Identities=30%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+++.||+|+|||.+|..++...
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHc
Confidence            59999999999999998877654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.32  E-value=0.00029  Score=64.76  Aligned_cols=98  Identities=21%  Similarity=0.351  Sum_probs=51.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCchhHHHHHHHHccCcEEEEcCccccccC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM  284 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~  284 (445)
                      +..+++.||+|+|||++|..+|+.++.       .++..+...+... -+| +.+....-.....+  -|||..+   +.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~qvY~~~~ig-Takp~~~E~~~v~h--hlid~~~---~~   76 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPV-------ELISVDSALIYKGMDIG-TAKPNAEELLAAPH--RLLDIRD---PS   76 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCE-------EEEECCTTTTBTTCCTT-TTCCCHHHHHHSCE--ETSSCBC---TT
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCC-------cEEeccccccccccccc-CCCCCHHHHcCCCE--EEeccCC---cc
Confidence            446788999999999999999988643       4444333222111 122 22222222222222  3344332   11


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316          285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  316 (445)
Q Consensus       285 ~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~  316 (445)
                      ...+.+++...+...+-.....+++.++..+|
T Consensus        77 e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGT  108 (316)
T 3foz_A           77 QAYSAADFRRDALAEMADITAAGRIPLLVGGT  108 (316)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccccHHHHHHHHHHHHHHHHhCCCcEEEEcCc
Confidence            11112345555555555556678877766655

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.31  E-value=0.0012  Score=67.59  Aligned_cols=27  Identities=33%  Similarity=0.329  Sum_probs=22.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+++.||||||||+++..+...+..
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~  190 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAALIQ  190 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            457999999999999999888877754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.30  E-value=0.0016  Score=58.12  Aligned_cols=28  Identities=25%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +...++++||||+|||++|..++.....
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~   49 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK   49 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3456889999999999999888766543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.27  E-value=0.00041  Score=59.57  Aligned_cols=27  Identities=33%  Similarity=0.551  Sum_probs=23.3

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .+.|.||+|+||||+.+.|+..+...+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHHhhcccCC
Confidence            478999999999999999999886434

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.25  E-value=0.00022  Score=62.20  Aligned_cols=24  Identities=38%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .++|.||||+||+|.|+.|++.++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999874

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.21  E-value=0.00038  Score=65.99  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCC-----------chhHHHHHH----
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKTRRRI----  265 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~-----------~~~~~~~~~----  265 (445)
                      +...++|+||||+|||++|..++......+    ..+..++.....    ...+|.           +......++    
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~  135 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV  135 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            344688999999999999999998776533    244444433211    111121           112222222    


Q ss_pred             HHccCcEEEEcCcccccc
Q 013316          266 KEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       266 ~~a~~~il~lDEid~l~~  283 (445)
                      .+....+|+||++..+.+
T Consensus       136 ~~~~~~lIVIDsl~~l~~  153 (349)
T 2zr9_A          136 RSGALDIIVIDSVAALVP  153 (349)
T ss_dssp             TTTCCSEEEEECGGGCCC
T ss_pred             hcCCCCEEEEcChHhhcc
Confidence            233468999999999985

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.20  E-value=0.00038  Score=64.13  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=21.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .-+++.||+|+|||++|..+++.++
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            3578899999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.19  E-value=0.00021  Score=67.09  Aligned_cols=28  Identities=25%  Similarity=0.496  Sum_probs=25.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+++|.||||+|||++++.|+..++.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            3457999999999999999999999986

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.18  E-value=0.00023  Score=61.17  Aligned_cols=28  Identities=32%  Similarity=0.535  Sum_probs=24.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.|+||+||||+|+.+++.++.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~   31 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRL   31 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3557889999999999999999998754

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.18  E-value=0.0034  Score=59.28  Aligned_cols=74  Identities=15%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc----c---------cc--CCchhHHHH----HHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----E---------FV--GHTGPKTRR----RIK  266 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~----~---------~~--g~~~~~~~~----~~~  266 (445)
                      ...++|+||||+|||+++..++..+...+    +.++.++......    .         ++  ..+......    +++
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~g----g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~  136 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMG----GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR  136 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence            34578999999999999999998876532    2455555443111    0         00  112222222    223


Q ss_pred             HccCcEEEEcCcccccc
Q 013316          267 EAEGGILFVDEAYRLIP  283 (445)
Q Consensus       267 ~a~~~il~lDEid~l~~  283 (445)
                      .....+++||.+..+.+
T Consensus       137 ~~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          137 SGVVDLIVVDSVAALVP  153 (356)
T ss_dssp             TSCCSEEEEECTTTCCC
T ss_pred             hcCCCeEEehHhhhhcC
Confidence            34568999999988886

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.18  E-value=0.0002  Score=60.24  Aligned_cols=28  Identities=32%  Similarity=0.545  Sum_probs=24.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..+++|.|+||+||||+|+.|++.++.
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~   33 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKL   33 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4568999999999999999999998875

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.17  E-value=0.0005  Score=65.24  Aligned_cols=75  Identities=16%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCC-----------chhHHHHHH----
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKTRRRI----  265 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~-----------~~~~~~~~~----  265 (445)
                      +...++|+||||+|||++|..++......+.    ++..++.....    ..-+|.           +...+..++    
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~----~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~  137 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA  137 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC----eEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence            3456889999999999999999987765332    45555543211    111111           122223332    


Q ss_pred             HHccCcEEEEcCcccccc
Q 013316          266 KEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       266 ~~a~~~il~lDEid~l~~  283 (445)
                      +.....+|+||.+..+.+
T Consensus       138 ~~~~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          138 RSGAVDVIVVDSVAALTP  155 (356)
T ss_dssp             HHTCCSEEEEECGGGCCC
T ss_pred             hccCCCEEEEcCHHHhcc
Confidence            334568999999999875

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.17  E-value=0.0014  Score=66.22  Aligned_cols=44  Identities=16%  Similarity=0.033  Sum_probs=33.3

Q ss_pred             hcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHH
Q 013316          172 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       172 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      +|.+..+.+|.+++...             .......+.++|++|+|||++|+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~-------------~~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEM-------------CDLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHH-------------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcc-------------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            58888888888765321             012345688999999999999999996

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.17  E-value=0.00022  Score=59.97  Aligned_cols=25  Identities=24%  Similarity=0.129  Sum_probs=22.8

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|+|.||||+||||+|+.|++.++.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~   27 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKY   27 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999998764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.16  E-value=0.0002  Score=61.10  Aligned_cols=26  Identities=35%  Similarity=0.704  Sum_probs=23.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..|+|.|+||+||||+|+.|++.++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~   28 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGV   28 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            35899999999999999999998865

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.16  E-value=0.00087  Score=63.99  Aligned_cols=64  Identities=14%  Similarity=0.027  Sum_probs=40.5

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH-ccCcEEEEcCcccc
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRL  281 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-a~~~il~lDEid~l  281 (445)
                      ......++|+||||+||||+++.++..+..       .++.+..+.-          .....+.. .+..++|+||++.+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g-------~~~~~~~~~~----------~~~~~lg~~~q~~~~l~dd~~~~  228 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLD----------RLNFELGVAIDQFLVVFEDVKGT  228 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTT----------THHHHHGGGTTCSCEEETTCCCS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCC-------cEEEEeccch----------hHHHHHHHhcchhHHHHHHHHHH
Confidence            445668999999999999999999986532       3332222110          00001111 23467899999998


Q ss_pred             cc
Q 013316          282 IP  283 (445)
Q Consensus       282 ~~  283 (445)
                      ..
T Consensus       229 ~~  230 (377)
T 1svm_A          229 GG  230 (377)
T ss_dssp             TT
T ss_pred             HH
Confidence            76

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.15  E-value=0.00019  Score=61.49  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=22.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .+..++|+|+||+||||+++.+++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999999987

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.14  E-value=0.00023  Score=60.58  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=24.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.|+||+||||+++.+++.++.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~   37 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGL   37 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            3557999999999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.14  E-value=0.00028  Score=61.21  Aligned_cols=30  Identities=30%  Similarity=0.361  Sum_probs=25.7

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+..|+|.|+||+||||+|+.|++.++.
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~   46 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI   46 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345567999999999999999999998764

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.13  E-value=0.0027  Score=64.78  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHH
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .++|.+....+|.+.+...              ......++++||+|+|||++|+.+++.
T Consensus       125 ~~vGR~~~l~~L~~~L~~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          125 VFVTRKKLVNAIQQKLSKL--------------KGEPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             SCCCCHHHHHHHHHHHTTS--------------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eecccHHHHHHHHHHHhcc--------------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence            3899998888887754211              123456889999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.12  E-value=0.0019  Score=58.50  Aligned_cols=28  Identities=14%  Similarity=0.201  Sum_probs=24.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +...++|.||+|+||||+.+.++..+..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            3446889999999999999999998754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.11  E-value=0.00026  Score=59.89  Aligned_cols=25  Identities=36%  Similarity=0.651  Sum_probs=23.0

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++|.||||+||||+|+.|++.++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~   30 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDL   30 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            6899999999999999999998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.08  E-value=0.00061  Score=62.75  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=23.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+..++|.||||+||||+|+.+++.+.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456788999999999999999998753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.08  E-value=0.00079  Score=59.05  Aligned_cols=24  Identities=25%  Similarity=0.177  Sum_probs=21.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      +..-++|+||||+|||++++.++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            344688999999999999999998

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.08  E-value=0.00035  Score=59.93  Aligned_cols=38  Identities=26%  Similarity=0.314  Sum_probs=28.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      .|+|.|+||+||||+|+.|++.++..+.    .+..++.+++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~----~~~~~~~~~~   40 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGI----NNKIINYGDF   40 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTC----CEEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCc----eEEEEECChH
Confidence            5889999999999999999999875332    3545543333

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.08  E-value=0.00038  Score=66.44  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=22.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++|.||+|+|||++|..|++.++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~   28 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNG   28 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCC
Confidence            35788999999999999999998754

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.06  E-value=0.0023  Score=54.92  Aligned_cols=25  Identities=16%  Similarity=-0.049  Sum_probs=20.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      -.+++||+|+|||+.+-.++..+..
T Consensus        10 i~v~~G~mgsGKTT~ll~~a~r~~~   34 (191)
T 1xx6_A           10 VEVIVGPMYSGKSEELIRRIRRAKI   34 (191)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHH
Confidence            5678999999999988888877754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.05  E-value=0.00028  Score=65.85  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=22.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++|.||+|+|||++|..||+.++.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~   66 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPL   66 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence            46889999999999999999987653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.04  E-value=0.0033  Score=59.56  Aligned_cols=27  Identities=19%  Similarity=0.191  Sum_probs=23.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+++.||+|+||||+.+++...+..
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence            346889999999999999999998865

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.03  E-value=0.00049  Score=58.80  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+|+|+||+|+||||+++.+....
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999987664

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.03  E-value=0.00086  Score=58.79  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .+.-|+|.||||+||+|.|+.|++.++
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            445677899999999999999999874

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.01  E-value=0.00035  Score=58.92  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=23.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      +..+.|.||||+||||+++.|+..++
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            34689999999999999999998865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.99  E-value=0.00085  Score=59.30  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..-+.|.||+|+||||+++.++...
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999999754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.99  E-value=0.00067  Score=58.44  Aligned_cols=26  Identities=15%  Similarity=0.318  Sum_probs=22.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....++|.||+|+||||+++.|....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            45578899999999999999998764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.99  E-value=0.00063  Score=61.67  Aligned_cols=41  Identities=22%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      +..++|.|+||+||||+|+.+++.+...+.    +++.++...+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~----~~i~~~~D~~~   44 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNI----DVIVLGSDLIR   44 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEECTHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCC----EEEEECchHHH
Confidence            456889999999999999999998765332    45434544443

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.98  E-value=0.00094  Score=62.68  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      +...++|+||||+|||++|..++...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            34568899999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.98  E-value=0.00042  Score=61.07  Aligned_cols=28  Identities=29%  Similarity=0.407  Sum_probs=24.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ++..++|.|+||+||||+|+.|++.++.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~   30 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHA   30 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            4567999999999999999999998753

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.97  E-value=0.0015  Score=57.19  Aligned_cols=30  Identities=20%  Similarity=0.221  Sum_probs=25.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      ..++++.|+||||||++|-.+|..+...+.
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~   35 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGV   35 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence            457999999999999999999999877553

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.97  E-value=0.0012  Score=58.82  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ....++|+||||+|||++++.++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3456889999999999999999975

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.96  E-value=0.0039  Score=62.29  Aligned_cols=76  Identities=13%  Similarity=0.101  Sum_probs=49.3

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK  350 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~  350 (445)
                      -+|+|||++.+.....    ....+.+..+.+.-....+.+|++|.+...+.+   ...++.-|...|.|...+..+...
T Consensus       345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I---~~~Iran~~~RI~lrv~s~~Dsr~  417 (574)
T 2iut_A          345 IVVVVDEFADMMMIVG----KKVEELIARIAQKARAAGIHLILATQRPSVDVI---TGLIKANIPTRIAFQVSSKIDSRT  417 (574)
T ss_dssp             EEEEESCCTTHHHHTC----HHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTS---CHHHHHTCCEEEEECCSCHHHHHH
T ss_pred             EEEEEeCHHHHhhhhh----HHHHHHHHHHHHHHhhCCeEEEEEecCcccccc---cHHHHhhhccEEEEEcCCHHHHHH
Confidence            5899999998865221    112233444444444456777777654433222   455777888889999999999888


Q ss_pred             HHH
Q 013316          351 ILH  353 (445)
Q Consensus       351 il~  353 (445)
                      |+.
T Consensus       418 ILd  420 (574)
T 2iut_A          418 ILD  420 (574)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.96  E-value=0.0004  Score=62.70  Aligned_cols=25  Identities=20%  Similarity=0.090  Sum_probs=22.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+++.||||+||||+|+.||+.++.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~   27 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGW   27 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCC
Confidence            4789999999999999999998764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.00053  Score=59.49  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..++|.|+||+||||+|+.|++.++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~   44 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGY   44 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.96  E-value=0.00036  Score=59.90  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.|+||+||||+|+.+++.++.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~   32 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGW   32 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3457889999999999999999988753

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.95  E-value=0.00052  Score=58.80  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++|.|+||+||||+++.|++.++.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999998874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.93  E-value=0.00039  Score=59.87  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=24.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.|+||+||||+|+.+++.++.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~   35 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY   35 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3567999999999999999999998754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.93  E-value=0.00037  Score=59.33  Aligned_cols=27  Identities=33%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..++|.|+||+||||+|+.+++.++.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~   31 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPG   31 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            457889999999999999999988765

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.93  E-value=0.00044  Score=58.24  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=23.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++|.|+||+||||+|+.+++.++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~   28 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGY   28 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            36899999999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.90  E-value=0.0011  Score=56.70  Aligned_cols=29  Identities=34%  Similarity=0.418  Sum_probs=25.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      .+..++|.|+||+||||+++.++..+...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~   40 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            44568899999999999999999998763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.90  E-value=0.00051  Score=57.56  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.8

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|+|.|+||+||||+|+.+++.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~   26 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNI   26 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.89  E-value=0.0068  Score=55.36  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....++|+||||+|||++++.++..+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            344688999999999999999998664

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.89  E-value=0.00047  Score=58.45  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..++|.|+||+||||+|+.+++
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4688999999999999999998

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.88  E-value=0.00076  Score=58.95  Aligned_cols=30  Identities=27%  Similarity=0.323  Sum_probs=26.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .+..|+|.|+||+||||+|+.|++.++..+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~   37 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG   37 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            456789999999999999999999988744

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.88  E-value=0.00086  Score=60.11  Aligned_cols=28  Identities=29%  Similarity=0.428  Sum_probs=24.5

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+..|+|.||||+||||+|+.|++.++
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3566899999999999999999998764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.88  E-value=0.00065  Score=60.48  Aligned_cols=28  Identities=29%  Similarity=0.466  Sum_probs=24.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.|+||+||||+|+.|++.++.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~   42 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV   42 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4567999999999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.88  E-value=0.0031  Score=71.75  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----cCC-----------chhHHHHHH---
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VGH-----------TGPKTRRRI---  265 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~----~g~-----------~~~~~~~~~---  265 (445)
                      .+...++|+|+||+|||++|..++..+...    ..+++.++......++    +|-           +...+...+   
T Consensus       730 ~~G~lilIaG~PG~GKTtLalqlA~~~a~~----g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l  805 (2050)
T 3cmu_A          730 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL  805 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHH
Confidence            345578899999999999999999988653    2367777666533332    331           122222222   


Q ss_pred             -HHccCcEEEEcCcccccc
Q 013316          266 -KEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       266 -~~a~~~il~lDEid~l~~  283 (445)
                       .+...++||||.+..+.+
T Consensus       806 ~~~~~~~LVIIDsLq~i~~  824 (2050)
T 3cmu_A          806 ARSGAVDVIVVDSVAALTP  824 (2050)
T ss_dssp             HHHTCCSEEEESCGGGCCC
T ss_pred             hhccCCCEEEEcchhhhcc
Confidence             234568999999999986

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.87  E-value=0.00045  Score=60.76  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=23.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...++|.|+||+||||+|+.|++.++.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~   31 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGL   31 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence            457899999999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.85  E-value=0.00041  Score=59.65  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=23.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..|+|.|+||+||||+|+.+++.++.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~   29 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGY   29 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456889999999999999999988753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.85  E-value=0.00055  Score=60.38  Aligned_cols=28  Identities=18%  Similarity=0.383  Sum_probs=24.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.||||+||||+|+.|++.++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~   31 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQL   31 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4567999999999999999999998754

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=96.82  E-value=0.00074  Score=49.34  Aligned_cols=74  Identities=11%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCCh
Q 013316          343 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDT  422 (445)
Q Consensus       343 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~  422 (445)
                      ++.++|.+||+.++++.         .+.++++.+.++..+.+++         |.++.+++..|......+        
T Consensus         1 ~d~~~R~~Il~~~l~~~---------~~~~~vdl~~la~~t~G~S---------GADi~~l~~eA~~~a~~~--------   54 (83)
T 3aji_B            1 MDRRQKRLIFSTITSKM---------NLSEEVDLEDYVARPDKIS---------GADINSICQESGMLAVRE--------   54 (83)
T ss_dssp             CCHHHHHHHHHHHHTTS---------CBCTTCCTHHHHTSSCCCC---------HHHHHHHHHHHHHGGGTS--------
T ss_pred             CCHHHHHHHHHHHhCCC---------CCCcccCHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHh--------
Confidence            46789999999999875         3455677777776555444         778888888874332221        


Q ss_pred             hhhhhccHHHHHHHHHHHHhc
Q 013316          423 DELRTITLEDLEAGLKLLLRL  443 (445)
Q Consensus       423 ~~~~~i~~~d~~~a~~~~~~~  443 (445)
                       ....|+.+||..|++.+.|.
T Consensus        55 -~~~~i~~~df~~Al~~~~ps   74 (83)
T 3aji_B           55 -NRYIVLAKDFEKAYKTVIKK   74 (83)
T ss_dssp             -CCSSBCHHHHHHHHHHHCC-
T ss_pred             -ccCCcCHHHHHHHHHHHccC
Confidence             12479999999999998763

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.82  E-value=0.00057  Score=59.97  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.3

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|+|.||||+||||+|+.|++.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~   26 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEI   26 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999988753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.81  E-value=0.00055  Score=59.07  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..++|.|+||+||||+|+.|++.++.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~   38 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGF   38 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999998753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.81  E-value=0.00056  Score=61.74  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=24.3

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+..++|.|+||+||||+|+.|++.++
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456788999999999999999998865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.80  E-value=0.00047  Score=60.49  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .++|.||||+||||+|+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.79  E-value=0.00046  Score=58.06  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..++|.||||+||||+|+.+ +.++
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g   25 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG   25 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC
Confidence            35889999999999999999 5543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.79  E-value=0.00044  Score=61.31  Aligned_cols=28  Identities=25%  Similarity=0.449  Sum_probs=23.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.|+||+||||+|+.|++.++.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~   33 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFEL   33 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4567999999999999999999987643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.78  E-value=0.00054  Score=58.47  Aligned_cols=26  Identities=38%  Similarity=0.546  Sum_probs=22.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++|.|+||+||||+|+.+++.++.
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~~   30 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELGF   30 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46889999999999999999987753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.77  E-value=0.00043  Score=59.39  Aligned_cols=25  Identities=32%  Similarity=0.586  Sum_probs=21.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ....+.|.||||+||||+++.|+..
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3456889999999999999999875

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.76  E-value=0.0021  Score=54.83  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=20.7

Q ss_pred             eeEeecCCCCchh-HHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKT-MVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt-~~A~~la~~~~~  232 (445)
                      -.++|||.|+||| .+.+++......
T Consensus        22 l~fiyG~MgsGKTt~Ll~~i~n~~~~   47 (195)
T 1w4r_A           22 IQVILGPMFSGKSTELMRRVRRFQIA   47 (195)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            4567999999999 888998887654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.76  E-value=0.00089  Score=58.00  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .+..+.|.||+|+||||+++.|+..++
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g   54 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETG   54 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            455788999999999999999998873

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=96.76  E-value=0.00088  Score=49.54  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChh
Q 013316          344 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD  423 (445)
Q Consensus       344 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~  423 (445)
                      |.++|.+||+.++++.         .+.++++.+.++..+.+++         |.++.+++..|.-....+         
T Consensus         2 d~~~R~~Il~~~~~~~---------~~~~dvdl~~lA~~t~G~S---------GADl~~l~~eAa~~a~r~---------   54 (88)
T 3vlf_B            2 DLEGRANIFRIHSKSM---------SVERGIRWELISRLCPNST---------GAELRSVCTEAGMFAIRA---------   54 (88)
T ss_dssp             CSSHHHHHHHHHHTTS---------CBCSCCCHHHHHHTCSSCC---------HHHHHHHHHHHHHHHHHH---------
T ss_pred             CHHHHHHHHHHHHCCC---------CCCCccCHHHHHHHcCCCc---------HHHHHHHHHHHHHHHHHh---------
Confidence            5678999999999875         4556788888777665555         677788887773322222         


Q ss_pred             hhhhccHHHHHHHHHHHHh
Q 013316          424 ELRTITLEDLEAGLKLLLR  442 (445)
Q Consensus       424 ~~~~i~~~d~~~a~~~~~~  442 (445)
                      ....|+.+||.+|++.+.+
T Consensus        55 ~~~~i~~~df~~Al~~v~~   73 (88)
T 3vlf_B           55 RRKVATEKDFLKAVDKVIS   73 (88)
T ss_dssp             SCSSBCHHHHHHHHHHHTC
T ss_pred             ccccCCHHHHHHHHHHHhc
Confidence            1236999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.74  E-value=0.0011  Score=57.89  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=26.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .+..++|.|+||+||||+|+.+++.++..+
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~   38 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN   38 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            356789999999999999999999988743

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.71  E-value=0.0032  Score=54.90  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=30.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeecccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l  249 (445)
                      .+..++|.|+||+||||+++.+++.+. ..+.    +++.++...+
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~----~~~~~~~d~~   65 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRV----HAYRLDGDNI   65 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC----CEEEECHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhccccCC----cEEEECChHH
Confidence            345788999999999999999999887 3232    4555554433

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.70  E-value=0.00093  Score=57.86  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=24.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..+.|.||+|+||||+++.|+..+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~   51 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQ   51 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4556889999999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.69  E-value=0.0011  Score=56.05  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..++|.||||+||||+++.++..++
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~g   33 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQLH   33 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence            4688999999999999999998764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.68  E-value=0.00071  Score=58.68  Aligned_cols=28  Identities=25%  Similarity=0.320  Sum_probs=23.6

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+..|+|.|+||+||||+|+.|++.++
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3445688999999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.67  E-value=0.00088  Score=58.36  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..|+|.|+||+||||+|+.|++.++.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            346889999999999999999998875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.66  E-value=0.0019  Score=54.71  Aligned_cols=38  Identities=26%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      ...+.|.|++|+||||+++.++..+...+.    +++.++..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~----~~i~~d~~   42 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDGD   42 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhCCC----cEEEECCh
Confidence            446889999999999999999998844222    56665543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.65  E-value=0.0035  Score=70.38  Aligned_cols=77  Identities=16%  Similarity=0.165  Sum_probs=49.6

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCC-----------chhHHHHHH--
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKTRRRI--  265 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~-----------~~~~~~~~~--  265 (445)
                      ..+...++|+||||+|||++|..++......+.    ++..++.....    ....|-           +...+...+  
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~----~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~  804 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA  804 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC----CeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence            345567999999999999999999998876332    55555544322    111221           122222222  


Q ss_pred             --HHccCcEEEEcCcccccc
Q 013316          266 --KEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       266 --~~a~~~il~lDEid~l~~  283 (445)
                        ++....+|+||.+..+.+
T Consensus       805 lv~~~~~~lVVIDsLq~l~~  824 (1706)
T 3cmw_A          805 LARSGAVDVIVVDSVAALTP  824 (1706)
T ss_dssp             HHHHTCCSEEEESCSTTCCC
T ss_pred             HHHccCCCEEEEechhhhcc
Confidence              334568999999999985

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.63  E-value=0.0021  Score=55.02  Aligned_cols=26  Identities=38%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      .+.|.|+||+||||+|+.+++.+...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~   27 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQK   27 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            47899999999999999999988543

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.62  E-value=0.012  Score=52.19  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=17.1

Q ss_pred             CeeEeecCCCCchhHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la  227 (445)
                      ..+++.||+|+|||++...+.
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHH
Confidence            579999999999998665443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.61  E-value=0.0012  Score=57.90  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++|.|+||+||||+|+.|++.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~   26 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGI   26 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999998743

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.60  E-value=0.0014  Score=56.98  Aligned_cols=26  Identities=15%  Similarity=-0.061  Sum_probs=20.5

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .+++||.|+|||+.+-.++......+
T Consensus        31 ~vitG~MgsGKTT~lL~~a~r~~~~g   56 (214)
T 2j9r_A           31 EVICGSMFSGKSEELIRRVRRTQFAK   56 (214)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            45799999999999888877765433

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.60  E-value=0.0028  Score=59.94  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=21.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...++|+||||+|||++|..++...
T Consensus       122 G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          122 MAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999998763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.60  E-value=0.0042  Score=59.77  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=20.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      +..-++|+||||+|||++++.++-.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Confidence            4456889999999999999977643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.59  E-value=0.011  Score=65.65  Aligned_cols=47  Identities=19%  Similarity=0.184  Sum_probs=35.5

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .++|.+...++|.+++...              ......+.|+|++|+|||++|+.+++..
T Consensus       125 ~~vgR~~~~~~l~~~l~~~--------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~  171 (1249)
T 3sfz_A          125 IFVTRKKLVHAIQQKLWKL--------------NGEPGWVTIYGMAGCGKSVLAAEAVRDH  171 (1249)
T ss_dssp             SCCCCHHHHHHHHHHHHTT--------------TTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred             eeccHHHHHHHHHHHHhhc--------------cCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence            4899998888888754311              2234568899999999999999887754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.57  E-value=0.0079  Score=57.40  Aligned_cols=28  Identities=14%  Similarity=0.201  Sum_probs=24.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +...+++.||+|+||||+.++++..+..
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            3446889999999999999999998864

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.56  E-value=0.0074  Score=51.58  Aligned_cols=30  Identities=20%  Similarity=0.045  Sum_probs=25.2

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      ...+++|+++|+|||++|-.++......+.
T Consensus        28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~   57 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK   57 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            457899999999999999999988766553

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.52  E-value=0.0012  Score=57.38  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+..++|.||||+||||+++.|+..+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45678999999999999999999875

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.52  E-value=0.0042  Score=62.10  Aligned_cols=29  Identities=34%  Similarity=0.678  Sum_probs=25.2

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      +..|++.|.||+||||+|+.|++.++..+
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~   63 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIG   63 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            44688999999999999999999998744

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.51  E-value=0.0013  Score=56.87  Aligned_cols=25  Identities=24%  Similarity=0.484  Sum_probs=22.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++|.|+||+||||+++.|++.++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC
Confidence            5789999999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.47  E-value=0.0018  Score=56.04  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=22.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      +..++|.|+||+||||+++.+++.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.46  E-value=0.0016  Score=57.43  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=21.9

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .++|.|+||+||||+|+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.46  E-value=0.0017  Score=57.43  Aligned_cols=28  Identities=39%  Similarity=0.385  Sum_probs=24.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..+.|.||||+||||+|+.|++.++.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~   35 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGA   35 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3567899999999999999999998753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.44  E-value=0.0018  Score=57.14  Aligned_cols=27  Identities=22%  Similarity=0.438  Sum_probs=23.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..+.|.||||+||||+++.|+..++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~   31 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQW   31 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346889999999999999999988753

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.43  E-value=0.0068  Score=60.00  Aligned_cols=77  Identities=12%  Similarity=0.082  Sum_probs=46.3

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK  350 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~  350 (445)
                      -+|+|||+..+....    .....+.+..|.+.-....+.+|++|.....+.+   ...++..|...|.|...+..|...
T Consensus       299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl---~~~i~~n~~~RI~lrv~s~~dsr~  371 (512)
T 2ius_A          299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSVDVI---TGLIKANIPTRIAFTVSSKIDSRT  371 (512)
T ss_dssp             EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTS---CHHHHHHCCEEEEECCSSHHHHHH
T ss_pred             EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccc---cHHHHhhcCCeEEEEcCCHHHHHH
Confidence            489999997776411    0111122333333333335666676654432221   455677888889999999999998


Q ss_pred             HHHH
Q 013316          351 ILHI  354 (445)
Q Consensus       351 il~~  354 (445)
                      |+..
T Consensus       372 ilg~  375 (512)
T 2ius_A          372 ILDQ  375 (512)
T ss_dssp             HHSS
T ss_pred             hcCC
Confidence            8764

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.42  E-value=0.0076  Score=55.50  Aligned_cols=75  Identities=11%  Similarity=0.000  Sum_probs=43.0

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCC-----------chhHH-HHHH------
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKT-RRRI------  265 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~-----------~~~~~-~~~~------  265 (445)
                      -++++||||+|||+++-.++......+  ..+.++.++...-.    .+-+|-           +...+ ..++      
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i  107 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI  107 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence            578999999999999877776654421  01244455543311    011111           22222 2222      


Q ss_pred             HHccCcEEEEcCccccccC
Q 013316          266 KEAEGGILFVDEAYRLIPM  284 (445)
Q Consensus       266 ~~a~~~il~lDEid~l~~~  284 (445)
                      ++....+|+||-|..+.++
T Consensus       108 ~~~~~~lvVIDSI~aL~~~  126 (333)
T 3io5_A          108 ERGEKVVVFIDSLGNLASK  126 (333)
T ss_dssp             CTTCCEEEEEECSTTCBCC
T ss_pred             hccCceEEEEecccccccc
Confidence            2234689999999999864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.40  E-value=0.0018  Score=58.02  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=24.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..+.|.||||+||||+++.|++.++.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~   53 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGL   53 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3567999999999999999999988753

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=96.37  E-value=0.0021  Score=56.06  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=20.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .++++.+|+|+|||.++-.++...
T Consensus        49 ~~~li~~~tGsGKT~~~~~~~~~~   72 (216)
T 3b6e_A           49 KNIIICLPTGSGKTRVAVYIAKDH   72 (216)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCHHHHHHHHHHHH
Confidence            479999999999999887776543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.36  E-value=0.0024  Score=54.26  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...+.|.||+|+||||+++.|+...
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468899999999999999998865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.36  E-value=0.0021  Score=55.68  Aligned_cols=26  Identities=19%  Similarity=0.194  Sum_probs=22.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+..+.|.||+|+||||+++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34578899999999999999998865

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.33  E-value=0.0022  Score=57.52  Aligned_cols=27  Identities=37%  Similarity=0.511  Sum_probs=24.2

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+.|.|++|+||||+++.|+..++.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            457999999999999999999998865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.29  E-value=0.0025  Score=55.56  Aligned_cols=26  Identities=23%  Similarity=0.227  Sum_probs=22.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+..+.|.||+|+||||+++.|+..+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34568899999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.29  E-value=0.031  Score=51.44  Aligned_cols=28  Identities=21%  Similarity=0.413  Sum_probs=24.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..++|.||+|+||||++..+|..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4567889999999999999999998864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.26  E-value=0.0048  Score=57.70  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=20.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ...++|+||||+|||++|..++..
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.25  E-value=0.0032  Score=54.59  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=22.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+.|.|++|+||||+|+.+++.++.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~   28 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGV   28 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            6889999999999999999998764

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=96.21  E-value=0.033  Score=48.85  Aligned_cols=44  Identities=18%  Similarity=0.391  Sum_probs=26.4

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      .+|++||+|.+....      +. ..+..++..+.. .++++..||-+....
T Consensus       169 ~~lViDEah~~~~~~------~~-~~~~~i~~~~~~~~~~l~~SAT~~~~~~  213 (228)
T 3iuy_A          169 TYLVIDEADKMLDME------FE-PQIRKILLDVRPDRQTVMTSATWPDTVR  213 (228)
T ss_dssp             CEEEECCHHHHHHTT------CH-HHHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred             eEEEEECHHHHhccc------hH-HHHHHHHHhCCcCCeEEEEEeeCCHHHH
Confidence            789999999987521      22 334455555654 445555565555444

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.14  E-value=0.0026  Score=54.40  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .++|.||+|+||||+++.|+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            467899999999999999986

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.14  E-value=0.018  Score=56.60  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..-+++.|+||+|||++|..++.....
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~  229 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVAT  229 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4446889999999999999999987754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.13  E-value=0.026  Score=54.72  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=22.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+.-+++.|+||+||||+|+.+++.+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            34568889999999999999998765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.12  E-value=0.011  Score=50.99  Aligned_cols=28  Identities=25%  Similarity=0.213  Sum_probs=24.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..+.+.||+|+||||+++.++..+..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3446789999999999999999998864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.11  E-value=0.0023  Score=57.54  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=24.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..|.|.|+||+||||+|+.|++.++.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~   48 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ   48 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4556889999999999999999998765

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.09  E-value=0.0036  Score=54.51  Aligned_cols=28  Identities=29%  Similarity=0.445  Sum_probs=24.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ....+.|.||+|+||||+++.|+..+..
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3446779999999999999999999874

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.09  E-value=0.0021  Score=55.68  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=20.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .+.|.|++|+||||+++.|+. ++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g   25 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LG   25 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CC
Confidence            588999999999999999998 53

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=96.07  E-value=0.054  Score=47.27  Aligned_cols=17  Identities=29%  Similarity=0.257  Sum_probs=14.8

Q ss_pred             CeeEeecCCCCchhHHH
Q 013316          207 PHMAFLGNPGTGKTMVA  223 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A  223 (445)
                      .++++.+|+|+|||.++
T Consensus        52 ~~~lv~~pTGsGKT~~~   68 (224)
T 1qde_A           52 HDVLAQAQSGTGKTGTF   68 (224)
T ss_dssp             CCEEEECCTTSSHHHHH
T ss_pred             CCEEEECCCCCcHHHHH
Confidence            46999999999999763

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.05  E-value=0.0041  Score=53.75  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...+.|.||+|+||||+++.|+..+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3467899999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.05  E-value=0.0031  Score=54.40  Aligned_cols=25  Identities=36%  Similarity=0.571  Sum_probs=22.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .+..+.|.|++|+||||+|+.|++.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4557889999999999999999986

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.03  E-value=0.0026  Score=54.62  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+.|+|++|+||||+|+.+++.++.
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg~   38 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYGA   38 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4678999999999999999987643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.03  E-value=0.008  Score=56.36  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...+++.||+|+||||+.++++..+.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            35799999999999999999987753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.02  E-value=0.0026  Score=55.19  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+.|.||+|+||||+++.++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577999999999999999987

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.00  E-value=0.0091  Score=58.96  Aligned_cols=30  Identities=33%  Similarity=0.661  Sum_probs=25.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .+..|++.|.||+||||+++.+++.+....
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~   67 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG   67 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            455789999999999999999999988643

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=96.00  E-value=0.026  Score=60.32  Aligned_cols=42  Identities=26%  Similarity=0.221  Sum_probs=32.8

Q ss_pred             hcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHH
Q 013316          172 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       172 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      +|.+....+|.+++...               .....+.++||+|+|||++|+.+++
T Consensus       131 VGRe~eLeeL~elL~~~---------------d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLEL---------------RPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHC---------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhcc---------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence            88888888887754321               2245788999999999999999985

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.97  E-value=0.0088  Score=58.29  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=23.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...++|+||||+|||+++..++.....
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~  177 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHNIAQ  177 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence            457899999999999999999887654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.96  E-value=0.0038  Score=54.36  Aligned_cols=26  Identities=35%  Similarity=0.491  Sum_probs=23.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      +..+.|.||+|+||||+++.|+..+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44677999999999999999999876

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.94  E-value=0.0044  Score=53.48  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...+.|.||+|+||||+++.|...+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            35688999999999999999998763

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=95.86  E-value=0.089  Score=45.13  Aligned_cols=44  Identities=18%  Similarity=0.474  Sum_probs=26.2

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      .+|++||+|.+...      ++ ...+..++..+.. .++++..||-+....
T Consensus       148 ~~lViDEah~~~~~------~~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~  192 (206)
T 1vec_A          148 QMIVLDEADKLLSQ------DF-VQIMEDIILTLPKNRQILLYSATFPLSVQ  192 (206)
T ss_dssp             CEEEEETHHHHTST------TT-HHHHHHHHHHSCTTCEEEEEESCCCHHHH
T ss_pred             CEEEEEChHHhHhh------Cc-HHHHHHHHHhCCccceEEEEEeeCCHHHH
Confidence            78999999998752      12 2445566666653 345555555444443

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.86  E-value=0.0053  Score=54.55  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=25.0

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+..+.|.|++|+||||+++.|+..++.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~   42 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGF   42 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            445667889999999999999999997753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.84  E-value=0.0041  Score=57.49  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..++|.|+||+||||+|+.+++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999999985

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=95.83  E-value=0.066  Score=49.33  Aligned_cols=46  Identities=15%  Similarity=0.224  Sum_probs=27.8

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKR  322 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~~  322 (445)
                      .+|+|||+|.+....      .....+..++..+.. .+++++.||-+.....
T Consensus       237 ~~lVlDEad~l~~~~------~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~  283 (300)
T 3fmo_B          237 KVFVLDEADVMIATQ------GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWK  283 (300)
T ss_dssp             SEEEETTHHHHHHST------THHHHHHHHHTTSCTTCEEEEEESCCCHHHHH
T ss_pred             eEEEEeCHHHHhhcc------CcHHHHHHHHHhCCCCCEEEEEeccCCHHHHH
Confidence            789999999987421      122344456666654 3455556666655543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.81  E-value=0.0047  Score=55.56  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+.|.||+|+||||+++.|++.++.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~   53 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNW   53 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            346889999999999999999988753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.81  E-value=0.035  Score=53.95  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=25.1

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..+..++|.|+||+||||++..++..+..
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34568999999999999999999998864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.81  E-value=0.057  Score=50.16  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=23.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..-+++.|+||+|||++|..++.....
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~   94 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSD   94 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4456889999999999999999877654

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=95.80  E-value=0.041  Score=57.42  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=17.4

Q ss_pred             CCeeEeecCCCCchhHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARI  225 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~  225 (445)
                      ..++++.||+|+|||+.+-.
T Consensus        46 ~~~~lv~apTGsGKT~~~~l   65 (715)
T 2va8_A           46 GNRLLLTSPTGSGKTLIAEM   65 (715)
T ss_dssp             TCCEEEECCTTSCHHHHHHH
T ss_pred             CCcEEEEcCCCCcHHHHHHH
Confidence            46899999999999998843

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.79  E-value=0.016  Score=59.78  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=23.8

Q ss_pred             CeeEeecCCCCchhH-HHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          207 PHMAFLGNPGTGKTM-VARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~-~A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ...|+.||||||||+ ++..|.+.+.. +    ..+..+..+.
T Consensus       206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~-~----~~ILv~a~TN  243 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVVEIILQAVKQ-G----LKVLCCAPSN  243 (646)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHT-T----CCEEEEESSH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhC-C----CeEEEEcCch
Confidence            467899999999995 55555555543 2    2555555443

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.74  E-value=0.0089  Score=54.94  Aligned_cols=27  Identities=19%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +.-|.+.||+|+||||+|+.+++.++.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~   31 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRR   31 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            345789999999999999999998874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.73  E-value=0.0043  Score=57.98  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+++.||+|+|||++|+.|++.++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3678999999999999999999875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.73  E-value=0.0052  Score=53.80  Aligned_cols=27  Identities=26%  Similarity=0.385  Sum_probs=23.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..+.|.|++|+|||++++.+++.++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~   29 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSM   29 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            356889999999999999999987653

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=95.71  E-value=0.064  Score=48.30  Aligned_cols=45  Identities=20%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKR  322 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~~  322 (445)
                      .+|+|||+|.+....      +. ..+..++..+.. .+++++.||-+.....
T Consensus       203 ~~lViDEah~l~~~~------~~-~~l~~i~~~~~~~~q~l~~SAT~~~~v~~  248 (262)
T 3ly5_A          203 QCLVIDEADRILDVG------FE-EELKQIIKLLPTRRQTMLFSATQTRKVED  248 (262)
T ss_dssp             CEEEECSHHHHHHTT------CH-HHHHHHHHHSCSSSEEEEECSSCCHHHHH
T ss_pred             CEEEEcChHHHhhhh------HH-HHHHHHHHhCCCCCeEEEEEecCCHHHHH
Confidence            789999999987521      21 445566666654 3455555655555443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.70  E-value=0.0049  Score=53.98  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      +..+.|.|++|+||||+++.|+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            44688999999999999999987

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.69  E-value=0.024  Score=49.81  Aligned_cols=26  Identities=27%  Similarity=0.489  Sum_probs=22.5

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..+-|.||||+||||.|+.|++.++.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g~   34 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFGI   34 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhCC
Confidence            35678999999999999999998754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.69  E-value=0.0029  Score=55.17  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=22.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      -+.|.|++|+||||+++.|+..+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.67  E-value=0.0057  Score=53.08  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+..+.+.|+||+||||+|+.|+..+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34457799999999999999998764

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.65  E-value=0.028  Score=49.25  Aligned_cols=92  Identities=17%  Similarity=0.123  Sum_probs=46.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc-------cccccccCCc-----hhHHHHHHHHc-cCcEEE
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-------DLVGEFVGHT-----GPKTRRRIKEA-EGGILF  274 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~-------~l~~~~~g~~-----~~~~~~~~~~a-~~~il~  274 (445)
                      -.+++||.|+|||+.+-..+......+.    .++.+...       .+.+.. |.+     -....++++.+ ..-+|+
T Consensus        21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~----kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~~~~dvVi   95 (234)
T 2orv_A           21 IQVILGPMFSGKSTELMRRVRRFQIAQY----KCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEALGVAVIG   95 (234)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTC----CEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHhccCCEEE
Confidence            4567899999999877666555543221    22222211       111110 110     00001233333 346999


Q ss_pred             EcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          275 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       275 lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      |||+..+.            . +.++...+++..+.||+++-.
T Consensus        96 IDEaQF~~------------~-v~el~~~l~~~gi~VI~~GL~  125 (234)
T 2orv_A           96 IDEGQFFP------------D-IVEFCEAMANAGKTVIVAALD  125 (234)
T ss_dssp             ESSGGGCT------------T-HHHHHHHHHHTTCEEEEECCS
T ss_pred             EEchhhhh------------h-HHHHHHHHHhCCCEEEEEecc
Confidence            99997763            1 445555665556677777654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.64  E-value=0.0071  Score=53.50  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...-++|.||||+||||+++.|++.+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            3446889999999999999999998864

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=95.63  E-value=0.054  Score=47.15  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=17.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..+++.+|+|+|||..+-..+..
T Consensus        52 ~~~li~~~TGsGKT~~~~~~~~~   74 (220)
T 1t6n_A           52 MDVLCQAKSGMGKTAVFVLATLQ   74 (220)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCchhhhhhHHHHH
Confidence            46999999999999876554433

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=95.61  E-value=0.049  Score=46.81  Aligned_cols=18  Identities=28%  Similarity=0.322  Sum_probs=15.3

Q ss_pred             CeeEeecCCCCchhHHHH
Q 013316          207 PHMAFLGNPGTGKTMVAR  224 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~  224 (445)
                      .++++.+|+|+|||..+-
T Consensus        39 ~~~li~~~TGsGKT~~~~   56 (207)
T 2gxq_A           39 KDLIGQARTGTGKTLAFA   56 (207)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CCEEEECCCCChHHHHHH
Confidence            479999999999998643

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.60  E-value=0.025  Score=55.37  Aligned_cols=28  Identities=18%  Similarity=0.164  Sum_probs=23.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..-+++.|+||+|||++|..++.....
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~  226 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAAL  226 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3446889999999999999999987654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.58  E-value=0.018  Score=48.14  Aligned_cols=29  Identities=17%  Similarity=0.072  Sum_probs=24.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      ...+.|.|++|+||||++..+...+...+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g   32 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG   32 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence            34688999999999999999999887543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.58  E-value=0.014  Score=54.00  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=25.2

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+..+.|.||+|+||||+++.|+..+..
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            334556889999999999999999998864

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.57  E-value=0.049  Score=50.66  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=26.0

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      ..++..++|.||+|+||||++..+|..+...
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~  132 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL  132 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            3455578899999999999999999988753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.57  E-value=0.0067  Score=55.51  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      +..|.|.|+||+||||+|+.++.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            44688999999999999999994

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.54  E-value=0.0054  Score=52.46  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=21.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...++|.||||+|||++|..+++..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999998754

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=95.54  E-value=0.089  Score=50.02  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=17.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARIL  226 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~l  226 (445)
                      .+.++++.+|+|+|||..+-..
T Consensus        43 ~~~~~lv~a~TGsGKT~~~~~~   64 (395)
T 3pey_A           43 PPRNMIAQSQSGTGKTAAFSLT   64 (395)
T ss_dssp             SCCCEEEECCTTSCHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHH
Confidence            3468999999999999866443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.52  E-value=0.0081  Score=52.67  Aligned_cols=27  Identities=19%  Similarity=0.220  Sum_probs=22.7

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .....+.|.||+|+||||+++.|+...
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            345568899999999999999999865

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=95.51  E-value=0.067  Score=55.82  Aligned_cols=19  Identities=21%  Similarity=0.242  Sum_probs=16.8

Q ss_pred             CCeeEeecCCCCchhHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVAR  224 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~  224 (445)
                      ..++++.||+|+|||+++.
T Consensus        39 ~~~~lv~apTGsGKT~~~~   57 (720)
T 2zj8_A           39 GKNALISIPTASGKTLIAE   57 (720)
T ss_dssp             TCEEEEECCGGGCHHHHHH
T ss_pred             CCcEEEEcCCccHHHHHHH
Confidence            4689999999999999883

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=95.51  E-value=0.074  Score=47.45  Aligned_cols=18  Identities=28%  Similarity=0.290  Sum_probs=15.4

Q ss_pred             CeeEeecCCCCchhHHHH
Q 013316          207 PHMAFLGNPGTGKTMVAR  224 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~  224 (445)
                      ..+++.+|+|+|||..+-
T Consensus        81 ~~~lv~a~TGsGKT~~~~   98 (249)
T 3ber_A           81 RDIIGLAETGSGKTGAFA   98 (249)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CCEEEEcCCCCCchhHhH
Confidence            579999999999998643

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=95.51  E-value=0.037  Score=48.97  Aligned_cols=17  Identities=29%  Similarity=0.280  Sum_probs=14.8

Q ss_pred             CeeEeecCCCCchhHHH
Q 013316          207 PHMAFLGNPGTGKTMVA  223 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A  223 (445)
                      ..+++.+|+|+|||.++
T Consensus        68 ~~~li~apTGsGKT~~~   84 (237)
T 3bor_A           68 YDVIAQAQSGTGKTATF   84 (237)
T ss_dssp             CCEEECCCSSHHHHHHH
T ss_pred             CCEEEECCCCCcHHHHH
Confidence            46999999999999764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.51  E-value=0.0089  Score=54.90  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=24.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..+..+.+.||+|+||||+|+.|+..+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            34556779999999999999999999875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.46  E-value=0.012  Score=52.28  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      .+.-|+|.|++|+||||+++.+++.+...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~   56 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI   56 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            3557889999999999999999999987543

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.43  E-value=0.029  Score=54.30  Aligned_cols=22  Identities=27%  Similarity=0.169  Sum_probs=17.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .-.++.|+||||||++...++.
T Consensus       162 ~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          162 KVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             EEEEEEECTTSCHHHHHHHHCC
T ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Confidence            3567899999999999877653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.40  E-value=0.022  Score=52.66  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=24.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++..++|.||+|+||||++..+|..+..
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            34556889999999999999999998865

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.37  E-value=0.21  Score=49.36  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=25.0

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      ..+..|+|.|+||+||||++..|+..+...+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G  129 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKG  129 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            3456788999999999999999998887643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.32  E-value=0.0077  Score=50.57  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=17.9

Q ss_pred             CCeeEeecCCCCchhHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARIL  226 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~l  226 (445)
                      ..-+.|.||+|+||||+++.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            345789999999999999963

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.32  E-value=0.024  Score=57.55  Aligned_cols=40  Identities=28%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      .+..|+|.|.||+||||+|+.|++.+...+.    +++.++...
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~----~~v~lDgD~   90 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDGDN   90 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEESHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEechHH
Confidence            3456889999999999999999999854332    666665433

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.32  E-value=0.0081  Score=51.96  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=23.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..|.|.||+|+|||++|+.||+.++.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~   32 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNI   32 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            46889999999999999999999876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.31  E-value=0.0061  Score=53.92  Aligned_cols=27  Identities=26%  Similarity=0.191  Sum_probs=16.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHH-HHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILG-RLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la-~~~  230 (445)
                      .....+.|.||+|+||||+++.|+ ..+
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            344568899999999999999999 764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.27  E-value=0.01  Score=53.02  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=23.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+.-+-|.||+|+||||+++.|+..++.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~   51 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQ   51 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            3445779999999999999999998754

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=95.25  E-value=0.077  Score=53.91  Aligned_cols=27  Identities=30%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...+++.+|+|+|||.+|-.++..+..
T Consensus       198 ~~~~ll~~~TGsGKT~~~~~~~~~l~~  224 (590)
T 3h1t_A          198 KKRSLITMATGTGKTVVAFQISWKLWS  224 (590)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCChHHHHHHHHHHHHh
Confidence            357899999999999998777776644

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=95.25  E-value=0.045  Score=53.91  Aligned_cols=24  Identities=29%  Similarity=0.180  Sum_probs=19.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..+++.+|+|+|||.++-.+....
T Consensus       109 ~~~ll~~~TGsGKT~~~l~~i~~~  132 (472)
T 2fwr_A          109 KRGCIVLPTGSGKTHVAMAAINEL  132 (472)
T ss_dssp             TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            359999999999999987776655

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=95.24  E-value=0.064  Score=49.81  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=17.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .++++.+|+|+|||.++-..+.
T Consensus        32 ~~~lv~~~TGsGKT~~~~~~~~   53 (337)
T 2z0m_A           32 KNVVVRAKTGSGKTAAYAIPIL   53 (337)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEcCCCCcHHHHHHHHHH
Confidence            4799999999999987655443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.24  E-value=0.019  Score=50.01  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      ..-|+|.|++|+||||+++.+++.+...+.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~   35 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGI   35 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            346789999999999999999999976443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.22  E-value=0.012  Score=51.52  Aligned_cols=27  Identities=15%  Similarity=0.128  Sum_probs=22.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....+.|.||+|+||||+.+.|+....
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            344688999999999999999998753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.21  E-value=0.068  Score=52.42  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=26.0

Q ss_pred             CCCCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          201 VGARRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       201 ~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +....+..+.|.||+|+||||+++.|+..+..
T Consensus       288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence            33444556889999999999999999998865

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=95.20  E-value=0.11  Score=46.14  Aligned_cols=17  Identities=24%  Similarity=0.343  Sum_probs=14.8

Q ss_pred             CeeEeecCCCCchhHHH
Q 013316          207 PHMAFLGNPGTGKTMVA  223 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A  223 (445)
                      ..+++.+|+|+|||..+
T Consensus        67 ~~~l~~a~TGsGKT~~~   83 (245)
T 3dkp_A           67 RELLASAPTGSGKTLAF   83 (245)
T ss_dssp             CCEEEECCTTSCHHHHH
T ss_pred             CCEEEECCCCCcHHHHH
Confidence            46999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.19  E-value=0.013  Score=50.90  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....+.|.||+|+||||+++.|+..+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            344678999999999999999998763

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.17  E-value=0.019  Score=48.32  Aligned_cols=28  Identities=36%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      ...+.|.|++|+||||+++.+...+...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            4568899999999999999999887653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.14  E-value=0.02  Score=54.10  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=25.3

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++..+.|.||+|+||||+++.|+..+..
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence            334556889999999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.14  E-value=0.015  Score=53.67  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=24.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..+.|.||+|+||||+++.|+..+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            4557889999999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.13  E-value=0.013  Score=54.11  Aligned_cols=28  Identities=36%  Similarity=0.618  Sum_probs=24.3

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..+...+.|.||+|+||||+++.|+..+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3445678899999999999999999987

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.13  E-value=0.013  Score=54.42  Aligned_cols=28  Identities=29%  Similarity=0.425  Sum_probs=23.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+.-+.|.||+|+||||+++.|+..+..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4446778999999999999999988763

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.12  E-value=0.014  Score=54.21  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=23.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+.-+.|.||+|+||||+++.|+..+..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            3445779999999999999999998864

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=95.10  E-value=0.22  Score=43.74  Aligned_cols=44  Identities=18%  Similarity=0.428  Sum_probs=26.2

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-EEEEEecCchhHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMK  321 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~i~a~~~~~~~  321 (445)
                      .+|++||+|.+....      +. ..+..++..+.... ++++.||-+....
T Consensus       173 ~~lViDEah~~~~~~------~~-~~~~~i~~~~~~~~~~l~~SAT~~~~~~  217 (236)
T 2pl3_A          173 QMLVLDEADRILDMG------FA-DTMNAVIENLPKKRQTLLFSATQTKSVK  217 (236)
T ss_dssp             CEEEETTHHHHHHTT------TH-HHHHHHHHTSCTTSEEEEEESSCCHHHH
T ss_pred             cEEEEeChHHHhcCC------cH-HHHHHHHHhCCCCCeEEEEEeeCCHHHH
Confidence            689999999887421      11 34556666665444 4555555444443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.10  E-value=0.01  Score=49.11  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      +...+.|.||.|+||||+.|.|+..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            33467899999999999999999987

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.10  E-value=0.081  Score=51.61  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=23.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..-+++.|+||+|||++|-.++.....
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~  223 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSD  223 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence            4446889999999999999999887754

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=95.08  E-value=0.2  Score=44.20  Aligned_cols=44  Identities=18%  Similarity=0.352  Sum_probs=26.6

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      ..|++||+|.+....      + ...+..++..+.. .++++..||-+....
T Consensus       178 ~~lViDEah~l~~~~------~-~~~~~~i~~~~~~~~q~~~~SAT~~~~~~  222 (242)
T 3fe2_A          178 TYLVLDEADRMLDMG------F-EPQIRKIVDQIRPDRQTLMWSATWPKEVR  222 (242)
T ss_dssp             CEEEETTHHHHHHTT------C-HHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred             cEEEEeCHHHHhhhC------c-HHHHHHHHHhCCccceEEEEEeecCHHHH
Confidence            689999999987522      2 2444566666654 345555565544443

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=95.07  E-value=0.062  Score=51.59  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=16.3

Q ss_pred             CCCeeEeecCCCCchhHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVA  223 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A  223 (445)
                      ....+++.+|+|+|||.++
T Consensus        63 ~~~~~lv~apTGsGKT~~~   81 (412)
T 3fht_A           63 PPQNLIAQSQSGTGKTAAF   81 (412)
T ss_dssp             SCCCEEEECCTTSCHHHHH
T ss_pred             CCCeEEEECCCCchHHHHH
Confidence            3568999999999999875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.00  E-value=0.28  Score=47.51  Aligned_cols=30  Identities=30%  Similarity=0.439  Sum_probs=26.0

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      .++..++|.|++|+||||++-.+|..+...
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            345678899999999999999999998774

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=94.99  E-value=0.064  Score=50.47  Aligned_cols=23  Identities=22%  Similarity=0.083  Sum_probs=18.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .++++.+|+|+|||+++-..+..
T Consensus        45 ~~~l~~~~TGsGKT~~~~~~~~~   67 (367)
T 1hv8_A           45 YNIVAQARTGSGKTASFAIPLIE   67 (367)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHHHHHHH
Confidence            58999999999999886554433

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=94.96  E-value=0.088  Score=50.34  Aligned_cols=21  Identities=29%  Similarity=0.221  Sum_probs=16.6

Q ss_pred             CeeEeecCCCCchhHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la  227 (445)
                      .++++.+|+|+|||.++-..+
T Consensus        59 ~~~li~a~TGsGKT~~~~~~~   79 (400)
T 1s2m_A           59 RDILARAKNGTGKTAAFVIPT   79 (400)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEECCCCcHHHHHHHHHH
Confidence            469999999999998664443

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.96  E-value=0.017  Score=50.71  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=25.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH-cC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM-VG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~-~~  234 (445)
                      .+.-|.|.|++|+||||+++.+++.+.. .+
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g   50 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYG   50 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccC
Confidence            4556888999999999999999999876 44

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=94.96  E-value=0.12  Score=45.26  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=26.9

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      .+|++||+|.+...+     .+ ...+..++..+.. .+++++.||-+....
T Consensus       168 ~~lViDEah~~~~~~-----~~-~~~~~~i~~~~~~~~~~l~lSAT~~~~~~  213 (230)
T 2oxc_A          168 RLFILDEADKLLEEG-----SF-QEQINWIYSSLPASKQMLAVSATYPEFLA  213 (230)
T ss_dssp             CEEEESSHHHHHSTT-----SS-HHHHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred             CEEEeCCchHhhcCc-----ch-HHHHHHHHHhCCCCCeEEEEEeccCHHHH
Confidence            589999999997532     11 2445566666654 345555565544433

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.94  E-value=0.017  Score=50.90  Aligned_cols=28  Identities=25%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      ..-|+|.||+|+||||+++.|++.+...
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            4568899999999999999999999764

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=94.94  E-value=0.1  Score=54.16  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=17.1

Q ss_pred             CCeeEeecCCCCchhHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARI  225 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~  225 (445)
                      ..++++.+|+|+|||+++-.
T Consensus        40 ~~~~lv~apTGsGKT~~~~l   59 (702)
T 2p6r_A           40 GKNLLLAMPTAAGKTLLAEM   59 (702)
T ss_dssp             CSCEEEECSSHHHHHHHHHH
T ss_pred             CCcEEEEcCCccHHHHHHHH
Confidence            45899999999999998843

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.16  Score=55.54  Aligned_cols=100  Identities=18%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-cccc--------------ccCC------------ch
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-LVGE--------------FVGH------------TG  258 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~-l~~~--------------~~g~------------~~  258 (445)
                      ...+++.||+|+|||+++-......-..+    ...+.+.+.. |..+              +.|.            |.
T Consensus       199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tp  274 (1108)
T 3l9o_A          199 GESVLVSAHTSAGKTVVAEYAIAQSLKNK----QRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTT  274 (1108)
T ss_dssp             TCCEEEECCSSSHHHHHHHHHHHHHHHTT----CEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEH
T ss_pred             CCCEEEECCCCCChHHHHHHHHHHHHhcC----CeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeCh
Confidence            35799999999999988755444332211    1333333332 1111              1121            34


Q ss_pred             hHHHHHHHHc-----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecC
Q 013316          259 PKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGY  316 (445)
Q Consensus       259 ~~~~~~~~~a-----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~  316 (445)
                      ..+...+...     .-++|+|||+|.+...      .. ......++..+.. .++++..||-
T Consensus       275 e~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~------~r-g~~~e~ii~~l~~~~qvl~lSATi  331 (1108)
T 3l9o_A          275 EILRSMLYRGSEVMREVAWVIFDEVHYMRDK------ER-GVVWEETIILLPDKVRYVFLSATI  331 (1108)
T ss_dssp             HHHHHHHHHCSSHHHHEEEEEEETGGGTTSH------HH-HHHHHHHHHHSCTTSEEEEEECSC
T ss_pred             HHHHHHHHcCccccccCCEEEEhhhhhcccc------ch-HHHHHHHHHhcCCCceEEEEcCCC
Confidence            4444444332     2379999999999641      11 1344555555554 3455555653

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=94.85  E-value=0.16  Score=54.06  Aligned_cols=25  Identities=16%  Similarity=0.141  Sum_probs=21.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...++|.||.|+||||+.|.++...
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~~i~  697 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVALIT  697 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCchHHHHHHHHHHH
Confidence            3468899999999999999998643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.85  E-value=0.018  Score=52.90  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=24.6

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..-++|.||||+|||++++.++..+..
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~   61 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT   61 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            34456889999999999999999988764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=94.83  E-value=0.015  Score=51.07  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=23.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..|.+.|++|||||++|+.||+.++.
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~lg~   40 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEELGI   40 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence            45778999999999999999999875

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=94.83  E-value=0.052  Score=49.43  Aligned_cols=23  Identities=13%  Similarity=0.303  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..++.+|+|+|||.++-.++...
T Consensus       130 ~~ll~~~tGsGKT~~~~~~~~~~  152 (282)
T 1rif_A          130 RRILNLPTSAGRSLIQALLARYY  152 (282)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEcCCCCCcHHHHHHHHHHH
Confidence            45779999999999987766654

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=94.82  E-value=0.2  Score=54.22  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=17.4

Q ss_pred             CeeEeecCCCCchhHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la  227 (445)
                      .++++.+|+|+|||.++....
T Consensus       102 ~~vLV~apTGSGKTlva~lai  122 (1010)
T 2xgj_A          102 ESVLVSAHTSAGKTVVAEYAI  122 (1010)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEECCCCCChHHHHHHHH
Confidence            479999999999999875433

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.79  E-value=0.015  Score=48.32  Aligned_cols=23  Identities=17%  Similarity=0.171  Sum_probs=20.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..+++|.|+||+|||++|..+.+
T Consensus        16 G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45899999999999999998876

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=94.78  E-value=0.058  Score=53.22  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=16.4

Q ss_pred             CCCeeEeecCCCCchhHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVA  223 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A  223 (445)
                      .+.++++.+|+|+|||.++
T Consensus       130 ~~~~~l~~a~TGsGKT~~~  148 (479)
T 3fmp_B          130 PPQNLIAQSQSGTGKTAAF  148 (479)
T ss_dssp             SCCEEEEECCSSSSHHHHH
T ss_pred             CCCcEEEEcCCCCchhHHH
Confidence            4578999999999999774

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.76  E-value=0.019  Score=57.91  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC-CCCCCCeEEeecccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG-ILPTDRVTEVQRTDL  249 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~-~~~~~~~~~~~~~~l  249 (445)
                      .+..|+|.|+||+||||+|+.|++.+...+ .    +++.++...+
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~----~~~~lD~D~i  436 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGR----SVSLLLGDTV  436 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSS----CEEEEEHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCc----eEEEECcHHH
Confidence            345688999999999999999999988532 2    5666665443

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=94.73  E-value=0.17  Score=54.61  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=18.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..+++.+|+|+|||+++......+
T Consensus        55 ~~vlv~apTGsGKTlv~~~~i~~~   78 (997)
T 4a4z_A           55 DSVFVAAHTSAGKTVVAEYAIAMA   78 (997)
T ss_dssp             CEEEEECCTTSCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHH
Confidence            579999999999998765544444

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.70  E-value=0.027  Score=49.05  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=25.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .-|+|.|++|+||||.++.+++.+...+
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~   31 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLG   31 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            4688999999999999999999998754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=94.69  E-value=0.12  Score=55.01  Aligned_cols=23  Identities=22%  Similarity=0.190  Sum_probs=19.7

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..++|.||.|+||||+.|.++..
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ial~  685 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTGVI  685 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.67  E-value=0.014  Score=57.71  Aligned_cols=27  Identities=4%  Similarity=-0.080  Sum_probs=24.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ...++|.|.+|+||||+|++|++.++.
T Consensus       395 ~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          395 GFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            457889999999999999999999975

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.63  E-value=0.014  Score=51.92  Aligned_cols=26  Identities=23%  Similarity=0.454  Sum_probs=22.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      +..+.|.|++|+||||+++.|++.+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            34688999999999999999999874

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=94.57  E-value=0.099  Score=45.45  Aligned_cols=44  Identities=32%  Similarity=0.425  Sum_probs=26.2

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      .+|++||+|.+....      + ...+..++..+.. .++++..||-+....
T Consensus       152 ~~lViDEah~~~~~~------~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~  196 (219)
T 1q0u_A          152 HILVVDEADLMLDMG------F-ITDVDQIAARMPKDLQMLVFSATIPEKLK  196 (219)
T ss_dssp             CEEEECSHHHHHHTT------C-HHHHHHHHHTSCTTCEEEEEESCCCGGGH
T ss_pred             eEEEEcCchHHhhhC------h-HHHHHHHHHhCCcccEEEEEecCCCHHHH
Confidence            789999999987521      1 1344556666654 345555565444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.53  E-value=0.023  Score=53.01  Aligned_cols=28  Identities=32%  Similarity=0.459  Sum_probs=24.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ++..+.|.||+|+||||+++.|+..+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~  155 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKN  155 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4556889999999999999999998865

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.50  E-value=0.026  Score=49.21  Aligned_cols=27  Identities=30%  Similarity=0.191  Sum_probs=24.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..-++|.|++|+||||.++.+++.+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            457889999999999999999998864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.44  E-value=0.023  Score=52.66  Aligned_cols=27  Identities=33%  Similarity=0.481  Sum_probs=23.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .+.-+.|.||+|+||||+++.|+..+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            344577999999999999999998875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.44  E-value=0.021  Score=48.25  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .-.+|+||.|+|||++.++|...+.
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            3678999999999999999988764

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.31  E-value=0.032  Score=56.02  Aligned_cols=40  Identities=28%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +..++|.|+||+||||+|+.+++.+...+.    ++..++...+
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~----~~~~ld~D~i  411 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARGR----KVTLLDGDVV  411 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEECHHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcCC----eEEEECchHh
Confidence            456889999999999999999998876442    4555554443

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=94.30  E-value=0.09  Score=50.51  Aligned_cols=19  Identities=32%  Similarity=0.354  Sum_probs=15.7

Q ss_pred             CeeEeecCCCCchhHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARI  225 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~  225 (445)
                      .++++.+|+|+|||..+-.
T Consensus        75 ~~~lv~a~TGsGKT~~~~~   93 (410)
T 2j0s_A           75 RDVIAQSQSGTGKTATFSI   93 (410)
T ss_dssp             CCEEEECCTTSSHHHHHHH
T ss_pred             CCEEEECCCCCCchHHHHH
Confidence            4699999999999976543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=94.30  E-value=0.27  Score=51.54  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=21.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..++|.||.|+||||+.|.++...
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            357899999999999999999865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.29  E-value=0.016  Score=48.58  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=23.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..+.|.||+|+||||+++.|...+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            36789999999999999999999875

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=94.27  E-value=0.13  Score=49.31  Aligned_cols=19  Identities=32%  Similarity=0.310  Sum_probs=15.6

Q ss_pred             CeeEeecCCCCchhHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARI  225 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~  225 (445)
                      ..+++.+|+|+|||+.+-.
T Consensus        78 ~~~lv~a~TGsGKT~~~~~   96 (414)
T 3eiq_A           78 YDVIAQAQSGTGKTATFAI   96 (414)
T ss_dssp             CCEEECCCSCSSSHHHHHH
T ss_pred             CCEEEECCCCCcccHHHHH
Confidence            4589999999999987533

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=94.24  E-value=0.15  Score=53.53  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=18.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..+++.||+|+|||++...+..
T Consensus       110 ~~vii~gpTGSGKTtllp~ll~  131 (773)
T 2xau_A          110 QIMVFVGETGSGKTTQIPQFVL  131 (773)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999997666643

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.22  E-value=0.024  Score=49.16  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=21.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..+.+.||+|+||||+.+.|+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            35778999999999999999988

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.16  E-value=0.049  Score=46.12  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.1

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .....+++.|++|+|||++...+...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34568999999999999999988754

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=94.15  E-value=0.21  Score=47.49  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=16.9

Q ss_pred             CeeEeecCCCCchhHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la  227 (445)
                      .++++.+|+|+|||..+-..+
T Consensus        46 ~~~lv~a~TGsGKT~~~~~~~   66 (391)
T 1xti_A           46 MDVLCQAKSGMGKTAVFVLAT   66 (391)
T ss_dssp             CCEEEECSSCSSHHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHH
Confidence            579999999999998764443

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=94.14  E-value=0.27  Score=47.91  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ++++..|+|+|||..+-.++...
T Consensus        25 ~~ll~~~tG~GKT~~~~~~~~~~   47 (494)
T 1wp9_A           25 NCLIVLPTGLGKTLIAMMIAEYR   47 (494)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            89999999999999887776554

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.10  E-value=0.0083  Score=54.24  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+..|+|.|++|+||||+|+.|++.+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            45578899999999999999999876

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.10  E-value=0.033  Score=48.38  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.4

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .....++|.|++|+|||++...+...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34668999999999999999998764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.08  E-value=0.071  Score=50.46  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=25.5

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ......++|.||||+|||++++.|+..+..
T Consensus       171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~  200 (422)
T 3ice_A          171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY  200 (422)
T ss_dssp             CBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             ecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence            345568999999999999999999988754

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=94.08  E-value=0.029  Score=57.50  Aligned_cols=25  Identities=36%  Similarity=0.485  Sum_probs=20.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...++.||||||||+++..+...+.
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l~  220 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHLA  220 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999988776666553

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.04  E-value=0.019  Score=57.60  Aligned_cols=28  Identities=32%  Similarity=0.409  Sum_probs=24.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ....+.|.|++|+||||+++.|+..+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            3456889999999999999999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.01  E-value=0.03  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      +..-++++|+||+|||++|-.++..
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3446889999999999999877654

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=93.95  E-value=0.2  Score=43.36  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=17.0

Q ss_pred             eeEeecCCCCchhH-HHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTM-VARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~-~A~~la~~~  230 (445)
                      -.+++||-|+|||+ +.+.+....
T Consensus        30 I~vitG~M~sGKTT~Llr~~~r~~   53 (219)
T 3e2i_A           30 IECITGSMFSGKSEELIRRLRRGI   53 (219)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            46689999999999 556654443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.80  E-value=0.031  Score=49.52  Aligned_cols=25  Identities=28%  Similarity=0.607  Sum_probs=21.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ....+.|.||+|+||||+.+.|+..
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4456889999999999999999754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.72  E-value=0.037  Score=49.16  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=22.3

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .. ..+.+.||+|+||||+.+.|+..+
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            44 678899999999999999998764

>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20

Probab=93.71  E-value=0.077  Score=39.17  Aligned_cols=89  Identities=15%  Similarity=0.080  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHHHHhccccccccccc-ccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCC
Q 013316          341 NDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC  419 (445)
Q Consensus       341 ~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~  419 (445)
                      +.|+.+|-..|.+.||-.....  ..|+ .-...++++++..++..|+    |.+| +|.|+..+...+|..+..+... 
T Consensus         1 sGYt~~EK~~IAk~~LiPkql~--~~GL~~~~~~i~d~al~~iI~~YT----REaG-VRnLer~i~~i~RK~a~~i~~~-   72 (94)
T 1qzm_A            1 SGYTEDEKLNIAKRHLLPKQIE--RNALKKGELTVDDSAIIGIIRYYT----REAG-VRGLEREISKLCRKAVKQLLLD-   72 (94)
T ss_dssp             CCCCHHHHHHHHHHTHHHHHHH--HTTCCTTTEEECHHHHHHHHHHHC----CCSS-SHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHHHHhccHHHHH--HhCCChhhceECHHHHHHHHHHhc----cccc-chHHHHHHHHHHHHHHHHHHHc-
Confidence            4689999999999887653321  1222 1234678889999998887    6677 8999999999999888877531 


Q ss_pred             CChhhhhhccHHHHHHHHH
Q 013316          420 LDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       420 ~~~~~~~~i~~~d~~~a~~  438 (445)
                       +.....+|+.+++.+.+.
T Consensus        73 -~~~~~v~v~~~~l~~~LG   90 (94)
T 1qzm_A           73 -KSLKHIEINGDNLHDYLG   90 (94)
T ss_dssp             -TTCCCEEECTTTTHHHHC
T ss_pred             -CCCCCeeECHHHHHHHcC
Confidence             112345788888876653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.67  E-value=0.043  Score=46.36  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ...++|.|++|+|||++...+..
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            34799999999999999987765

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=93.65  E-value=0.32  Score=43.19  Aligned_cols=18  Identities=22%  Similarity=0.263  Sum_probs=15.2

Q ss_pred             CeeEeecCCCCchhHHHH
Q 013316          207 PHMAFLGNPGTGKTMVAR  224 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~  224 (445)
                      ..+++.+|+|+|||..+-
T Consensus        61 ~~~l~~a~TGsGKT~~~~   78 (253)
T 1wrb_A           61 RDIMACAQTGSGKTAAFL   78 (253)
T ss_dssp             CCEEEECCTTSSHHHHHH
T ss_pred             CCEEEECCCCChHHHHHH
Confidence            469999999999997653

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.64  E-value=0.033  Score=52.56  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=22.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...-+.|+||||+|||++++.++...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34467899999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.63  E-value=0.035  Score=49.28  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....+.|.||+|+||||+.+.|+..+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568899999999999999998765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.60  E-value=0.033  Score=48.98  Aligned_cols=25  Identities=32%  Similarity=0.636  Sum_probs=20.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ....+.|.||+|+||||+.+.|+..
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3446779999999999999999754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=93.55  E-value=0.04  Score=49.96  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+.|.||+|+||||+.+.|+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.54  E-value=0.074  Score=46.23  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...++|.|++|+|||+++..++..+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.53  E-value=0.037  Score=47.10  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..+.|.|++|+|||++.+.+...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            36889999999999999999864

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=93.48  E-value=0.11  Score=51.77  Aligned_cols=24  Identities=13%  Similarity=0.278  Sum_probs=19.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..+++.||+|+|||.++-.++...
T Consensus       129 ~~~ll~~~tGsGKT~~~~~~~~~~  152 (510)
T 2oca_A          129 RRRILNLPTSAGRSLIQALLARYY  152 (510)
T ss_dssp             SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHH
Confidence            468999999999999986665543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=93.47  E-value=0.09  Score=45.08  Aligned_cols=28  Identities=29%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      -|.|.|+.|+||||.++.|++.+...+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~   29 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGK   29 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            3678999999999999999999987554

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.45  E-value=0.041  Score=47.04  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..++|.||+|+|||++.+.+...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46889999999999999999864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=93.44  E-value=0.038  Score=46.55  Aligned_cols=21  Identities=24%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             eEeecCCCCchhHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ++++|++|+|||++|+.++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999855

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=93.42  E-value=0.34  Score=50.50  Aligned_cols=24  Identities=17%  Similarity=0.156  Sum_probs=21.3

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .++|.||.|+||||+.|.++....
T Consensus       578 i~~I~GpNGsGKSTlLr~iagl~~  601 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTALIAL  601 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHhhhh
Confidence            577999999999999999998753

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=93.40  E-value=0.14  Score=48.60  Aligned_cols=18  Identities=28%  Similarity=0.239  Sum_probs=15.1

Q ss_pred             CeeEeecCCCCchhHHHH
Q 013316          207 PHMAFLGNPGTGKTMVAR  224 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~  224 (445)
                      .++++.+|+|+|||.++-
T Consensus        59 ~~~lv~~~TGsGKT~~~~   76 (394)
T 1fuu_A           59 HDVLAQAQSGTGKTGTFS   76 (394)
T ss_dssp             CCEEECCCSSHHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHH
Confidence            468999999999997743

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=93.34  E-value=0.16  Score=49.31  Aligned_cols=21  Identities=29%  Similarity=0.213  Sum_probs=17.0

Q ss_pred             CeeEeecCCCCchhHHH-HHHH
Q 013316          207 PHMAFLGNPGTGKTMVA-RILG  227 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A-~~la  227 (445)
                      ..+++.||+|+|||.++ ..+.
T Consensus         3 ~~~lv~a~TGsGKT~~~l~~~l   24 (431)
T 2v6i_A            3 ELTVLDLHPGAGKTRRVLPQLV   24 (431)
T ss_dssp             CEEEEECCTTSCTTTTHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            47999999999999976 4343

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.32  E-value=0.034  Score=52.88  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=22.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...+.|.||+|+||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.32  E-value=0.034  Score=48.45  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=21.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ....+.|.||+|+||||+.+.|+..
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3446779999999999999999754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.32  E-value=0.092  Score=49.08  Aligned_cols=29  Identities=14%  Similarity=0.058  Sum_probs=24.3

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+..-+++.|+||+|||++|..++.....
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~   72 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALN   72 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            34456889999999999999999988765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.32  E-value=0.042  Score=49.55  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=21.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....+.|.||+|+||||+.+.|+..+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44467799999999999999997653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.32  E-value=0.046  Score=51.56  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....+.|.||+|+||||+.|.|+...
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            34467899999999999999999865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.31  E-value=0.048  Score=44.48  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .+++.|++|+|||++...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998753

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=93.27  E-value=0.047  Score=57.43  Aligned_cols=25  Identities=36%  Similarity=0.485  Sum_probs=20.1

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...++.||||||||+++..+...+.
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l~  396 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHLA  396 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4678999999999988777666554

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.25  E-value=0.04  Score=46.50  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..+++.|++|+|||++.+.+..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999876

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.23  E-value=0.039  Score=45.32  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ...+++.|++|+|||++...+...
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            457999999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.17  E-value=0.049  Score=52.65  Aligned_cols=26  Identities=19%  Similarity=0.111  Sum_probs=22.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...+++.||+|+||||+.+++...+.
T Consensus       167 ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            34578999999999999999998875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.16  E-value=0.055  Score=48.94  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=21.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .....+.|.||+|+||||+.+.|+..
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34456889999999999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.11  E-value=0.047  Score=49.20  Aligned_cols=27  Identities=30%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .....+.|.||+|+||||+.+.|+..+
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            344567899999999999999997653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.10  E-value=0.12  Score=47.55  Aligned_cols=28  Identities=32%  Similarity=0.381  Sum_probs=24.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      +..+++.|++|+||||++..+|..+...
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~  125 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK  125 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            4567789999999999999999988653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.06  E-value=0.038  Score=50.16  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=21.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....+.|.||+|+||||+.+.|+..+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            34467899999999999999998754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.06  E-value=0.088  Score=45.92  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=22.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....++|.|++|+|||+++..++....
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            345788999999999999999987754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.03  E-value=0.055  Score=48.38  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ....+.|.||+|+||||+.+.|+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3446789999999999999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.99  E-value=0.05  Score=44.93  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..+++.|++|+|||++.+.+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4688999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	445
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	4e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-05
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1jbka_	195	c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia col	6e-06
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	6e-06
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	2e-05
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-04
d1um8a_	364	c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2	5e-05
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	6e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-04
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	7e-04
d1r6bx2	268	c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A	8e-04
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	8e-04
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	9e-04
d1ny5a2	247	c.37.1.20 (A:138-384) Transcriptional activator si	0.002
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	0.002
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 3e-17
 Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
           TPLHV++      IVK+LL+            N+  ETPLHMAA+ G  E AK LL + A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKM 161
            + AKA + +TPL H +   G   + +LLL ++                A  
Sbjct: 58  KVNAKAKDDQTPL-HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 108

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 3e-13
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  AQ G +     L++    +  +    M  TPLHV++ Y   ++VK    +    + 
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMV--DATTRMGYTPLHVASHYGNIKLVK----FLLQHQA 321

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
           ++ A+   G +PLH AA+ G  +   LLL +GA     +++G TPL       G   + +
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GYISVTD 380

Query: 137 LLLWHSEE 144
           +L   ++E
Sbjct: 381 VLKVVTDE 388

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 4e-11
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  +  G L   + LL+   S  N  N V  +TPLH++A     E+ K LL+     K 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASP-NVSN-VKVETPLHMAARAGHTEVAKYLLQN----KA 57

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
           ++ A+    +TPLH AA+ G     KLLL + A        G TPL  
Sbjct: 58  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 105

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 47  MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
              TPLHV+A Y K  + + LLE          A    G TPLH+A  +   +  KLLL 
Sbjct: 131 KGFTPLHVAAKYGKVRVAELLLER----DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 107 HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
            G    + A  G TPL H++      ++   LL +
Sbjct: 187 RGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLLQY 220

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  A+   +   + LL+   S       V   TPLH++A    AE+V        + + 
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGS--ANAESVQGVTPLHLAAQEGHAEMVA----LLLSKQA 255

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
                N  G TPLH+ A+ G    A +L+ HG  ++A    G TPL  
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 303

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H      +L    +LL       +        TPLH++A  N+ E+ +SLL++ G+   
Sbjct: 169 LHVAVHHNNL-DIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSAN- 225

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
              A+++ G TPLH+AA+ G  E   LLL+  A        G TPL HL    G   + +
Sbjct: 226 ---AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL-HLVAQEGHVPVAD 281

Query: 137 LLLWH 141
           +L+ H
Sbjct: 282 VLIKH 286

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 8e-08
 Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 36/166 (21%)

Query: 5   QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
            + +  +     +H  A++G     + LL +N + +N +     QTPLH +A      +V
Sbjct: 29  SNVKVETP----LHMAARAGHTEVAKYLL-QNKAKVNAKAKDD-QTPLHCAARIGHTNMV 82

Query: 65  KSLLE-----------------------------WPGNDKVELEAQNMYGETPLHMAAKN 95
           K LLE                                  +         G TPLH+AAK 
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

Query: 96  GCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           G    A+LLL   A   A    G TPL H++    +  + +LLL  
Sbjct: 143 GKVRVAELLLERDAHPNAAGKNGLTPL-HVAVHHNNLDIVKLLLPR 187

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.2 bits (173), Expect = 2e-14
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 18  HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77
              A    L      + +  +   +      ++  +   G  K  I+++L        + 
Sbjct: 193 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM- 251

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
           L AQ+  G+T L++AA+ G       LL +GA        G  P+D
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 30  QRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89
              L  + S  N       Q   HVS      E+  +      N  + ++    +G TPL
Sbjct: 55  PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE---HGNTPL 111

Query: 90  HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTP 121
           H        E  K L+ HG+      N G++ 
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDNMGESC 143

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 13  KPATIHGCAQSGDLLAFQRLL--RENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW 70
           K +  +           + L       ++LN ++     T L+++A      IV +LL++
Sbjct: 223 KESKPNDKNGERKDSILENLDLKWIIANMLNAQD-SNGDTCLNIAARLGNISIVDALLDY 281

Query: 71  PGNDKVELEAQNMYGETPLHMAA 93
                 +    N  G  P+   A
Sbjct: 282 ----GADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 11  SAKPATIHGCAQSGDLLAFQRLLRE-----NPSLLNERNPV--MAQTPLHVSAGYNKAEI 63
           S + +      Q    ++F  LL+E       + LN   PV     TPLH        E+
Sbjct: 63  SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLEL 122

Query: 64  VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN----EAAKLLLAHGAFIEAKANEGK 119
           VK L++   N        +  GE+ L  A K+  N        LL      +  + +  +
Sbjct: 123 VKHLVKHGSN----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR 178

Query: 120 TPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKI 179
           T L H+    G         ++ +        +     ++  +E E++ ++  G  +  I
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238

Query: 180 Q---LRKWAKGMLLDER 193
                 KW    +L+ +
Sbjct: 239 LENLDLKWIIANMLNAQ 255

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 18  HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77
                + D   F+ LL      L   +  M +T LH     +      +  ++  +  + 
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMG 206

Query: 78  L---------EAQNMYGETPLHMAAKNGCNEAAKLLLAH---GAFIEAKANEGKTPLDHL 125
                     ++     E+  +       +   + L         + A+ + G T L ++
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL-NI 265

Query: 126 SNGPGSAKLRELLLWH 141
           +   G+  + + LL +
Sbjct: 266 AARLGNISIVDALLDY 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 1e-13
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 18  HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77
              +   D+ A   LL ++ + +N R     +TPL ++       +V+ LLE    +   
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADVNVRGERG-KTPLILAVEKKHLGLVQRLLEQEHIE--- 245

Query: 78  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK 114
           +   +  G+T L +A +    + A+LL   GA  +  
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 3e-11
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 9/129 (6%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA---EIVKSLLEWPGN 73
           +   A+ G +   + LL E  + +N  + +     +H     + +    I   LL+    
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH--- 208

Query: 74  DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANEGKTPLDHLSNGPGSA 132
              ++  +   G+TPL +A +       + LL      I    ++GKT L  L+      
Sbjct: 209 -GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLK 266

Query: 133 KLRELLLWH 141
           K+ ELL   
Sbjct: 267 KIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 6e-06
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 83  MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANE-GKTPLDHLSNGPGSAKLRELLLWH 141
           +     L  A +N   +  + LL  GA +  +  E G TPL H +       + ELLL H
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-HNAVQMSREDIVELLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 47  MAQTPLHVSAGYNKAEIVKSLLEWPGND------KVELEAQNMYGETPLHMAAKNGCNEA 100
              T    +A Y K + +K L +   N       K + E     G T L  AA+ G  E 
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 101 AKLLLAH-GAFIEAKANEGKTPLDH 124
            K+LL   GA + A  N G+  L H
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIH 188

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAH 107
             L  +      ++V+ LLE        +  Q    G TPLH A +    +  +LLL H
Sbjct: 7   HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +    Q+ D+   Q+LL    ++ N +      TPLH +   ++ +IV+ LL    +  +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
               +   G TP  +AA  G  +  KL L+ GA +      G T    
Sbjct: 68  ----RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME 111

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T LHV+A     E++K L++   +    +  ++  G TPLH AA  G  EA ++L+ + 
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 109 AFIEAKANEGKTPLD 123
             +EA    G+T  D
Sbjct: 256 CDMEAVNKVGQTAFD 270

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 7e-06
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
            TPLH +A + K E  + L+E       ++EA N  G+T   +A ++      +L 
Sbjct: 233 WTPLHAAAHWGKEEACRILVEN----LCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 11/40 (27%), Positives = 13/40 (32%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
                  A  +G  E    LL  GA I     +G T L  
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQ 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T LH +A  +   IVK L+   G++K +   Q+  G+TP+ +AA+ G  E    L+  G
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDK---QDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           A +EA      T             + ++  
Sbjct: 245 ASVEAVDATDHTARQLAQAN-NHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH- 107
           ++P+ +      +  +   +     + ++      +  T LH  A N   E ++ L+ H 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHE 56

Query: 108 -------GAFIEAKANEGKTPLDH 124
                  GA + A   +  TPL  
Sbjct: 57  AKECIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
          P  +H    +G     + + RE+   +N  +P   +T LH  A  + AE  + L+     
Sbjct: 3  PIKLH-TEAAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 74 DKVELEA----QNMYGETPLHMAAKNGCNE 99
          + +   A     +    TPL +A       
Sbjct: 59 ECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 37/228 (16%)

Query: 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 228
            ++ G  E K +L++  + +    R   +G     R P  +  +G PG GKT +AR +  
Sbjct: 9   KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAG 64

Query: 229 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQ 285
              +              +D V  FVG    + R   + A+     I+F+DE   +   +
Sbjct: 65  EARV-------PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 117

Query: 286 KADDK---DYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTK 336
            +      D   + L +++  MDG      +VV+ A       R    +    R  R  +
Sbjct: 118 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDR 172

Query: 337 FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384
               +  + +   +IL I            G  L     +  +A    
Sbjct: 173 QIAIDAPDVKGREQILRIH---------ARGKPLAEDVDLALLAKRTP 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 8e-11
 Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 31/161 (19%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK- 75
           +   A SG L   +  +  + SL    +   ++T LH +      EIV+ LL+       
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 76  ----------------------------VELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
                                        ++ A N  G TPLH AA    +E A +LL  
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148
           GA  +AK +   T + H +   G+ K+  +LL++      +
Sbjct: 126 GANPDAKDHYEATAM-HRAAAKGNLKMIHILLYYKASTNIQ 165

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 9e-10
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 17  IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
           +H  A          LL E  +  + ++     T +H +A     +++  LL +  +   
Sbjct: 107 LHYAASKNRHEIAVMLL-EGGANPDAKDH-YEATAMHRAAAKGNLKMIHILLYYKAS--- 161

Query: 77  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128
               Q+  G TPLH+A      E AKLL++ GA I  +  E KTPL     G
Sbjct: 162 -TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 212

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105
            TPLH++    + E  K L+         +  +N   +TPL +A   G     K ++
Sbjct: 170 NTPLHLACDEERVEEAKLLVSQ----GASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 37/228 (16%)

Query: 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 228
           +++ G  E K ++ +  + +    R + LG K     P  +  +G PGTGKT++A+ +  
Sbjct: 12  ADVAGCDEAKEEVAELVEYLREPSRFQKLGGK----IPKGVLMVGPPGTGKTLLAKAIAG 67

Query: 229 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG---ILFVDEAYRLIPMQ 285
              +           +  +D V  FVG    + R   ++A+     I+F+DE   +   +
Sbjct: 68  EAKVPFF-------TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120

Query: 286 KAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTK 336
            A      D   + L +++  MDG      ++VI A       R    +    R  R  +
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA-----TNRPDVLDPALLRPGRFDR 175

Query: 337 FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384
                  +     +IL + M             L        IA    
Sbjct: 176 QVVVGLPDVRGREQILKVHMRR---------VPLAPDIDAAIIARGTP 214

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
           T    A         RLLR+  + LN+  P   +TPLH++     A +++ LL+      
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA----G 215

Query: 76  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
            +  A+   G TPL  A        A+LL AHGA
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC 97
           T LH++  +     +  LL +       L+ QN  G+T LH+AA  G 
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGE 57

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 85  GETPLHMAAKNGCNEAAKLLLAHGA---FIEAKANEGKTPLDH 124
           G+T LH+A  +        LL   A   +++ + + G+T L  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL 51

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 81  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140
           +   G TPLH+A +       +LLL  GA   A+   G+TPL   +    +  L  LL  
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL-GSALLRPNPILARLLRA 246

Query: 141 H 141
           H
Sbjct: 247 H 247

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 9e-09
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 50  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            PLH +   N+   V+ LL    +    L  ++  G  PLH +     +E    LL+  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSL---LLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL-AH 107
           Q PLH +A     ++++      G  K  +  Q+  G TPL  A   G  +AA LL+  +
Sbjct: 139 QIPLHRAASVGSLKLIE---LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 195

Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
           GA  +   N+G    D   N     ++++  L
Sbjct: 196 GAEYDLVDNKGAKAEDVALN----EQVKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            TPL  +      +    L+E  G +    +  +  G     +A      +  K  L + 
Sbjct: 173 WTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNE---QVKKFFLNNV 226

Query: 109 A 109
            
Sbjct: 227 V 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 87  TPLHMAAKNGCNEAAKLLL-AHGAFIEAKANEGKTPLDH 124
            PLH A         + LL +  + +  K  +G+ PL  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW 40

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.2 bits (124), Expect = 6e-08
 Identities = 11/92 (11%), Positives = 20/92 (21%), Gaps = 3/92 (3%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +    V+A    +  +   L         ++           +AA+NG       L    
Sbjct: 91  EVICFVAAITGCSSALD-TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149

Query: 109 AFIEAK--ANEGKTPLDHLSNGPGSAKLRELL 138
                     E        +       L  L 
Sbjct: 150 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 12/123 (9%)

Query: 29  FQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLL-------EWPGNDKVELEAQ 81
           FQ  +  N   L   +   A   + +    N  ++ + L                +   +
Sbjct: 28  FQHFISANELSLMTLSYKEA-IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK 86

Query: 82  NMYGETPLHMAAKNGCNEAAK---LLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
            +  E    +AA  GC+ A     LLL     ++    E       L+   G   +   L
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAF-RLAAENGHLHVLNRL 145

Query: 139 LWH 141
              
Sbjct: 146 CEL 148

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 48  AQTPLHVSAGYNKAEIVKSLLEWPGN-DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
               L         + ++ LL  PG                 L +A + G   A  LLL+
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

Query: 107 HG 108
             
Sbjct: 339 IP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.1 bits (116), Expect = 5e-07
 Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 7/129 (5%)

Query: 17  IHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
               A +G    L    LL  +  ++             ++A      ++  L E    +
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 75  KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG--PGSA 132
              +            +AA+NG       L            + +            G  
Sbjct: 153 --IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 133 KLRELLLWH 141
            +   LL  
Sbjct: 211 NVINFLLDC 219

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 18/153 (11%), Positives = 33/153 (21%), Gaps = 17/153 (11%)

Query: 3   KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQ------TPLHVSA 56
                  ++         A           L + P +L        +       P     
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 245

Query: 57  GYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF- 110
                E+  +      +   +L       Q  Y    L         +  + LL+     
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 305

Query: 111 ----IEAKANEGKTPLDHLSNGPGSAKLRELLL 139
                     +    L  L+   G+     LLL
Sbjct: 306 ALAPTATIPGDANELL-RLALRLGNQGACALLL 337

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 7e-08
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 36/135 (26%)

Query: 11  SAKPATIHGCAQSGDLLAFQRLLRE----NPSLLNERNPVMAQTPLHVSA---GYNKAEI 63
           +AK  ++    ++ D+    +   +       +         +T LH++          I
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 64  VKSLLEWPGN-----------------------------DKVELEAQNMYGETPLHMAAK 94
           V  L++  GN                              K  +E  N  GETPL +A +
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123

Query: 95  NGCNEAAKLLLAHGA 109
                  +LL    +
Sbjct: 124 LKHEHCEELLTQALS 138

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
           +T LH++      ++V  LL+   +           G +P  +          + L    
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADV----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

Query: 109 A 109
            
Sbjct: 202 L 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 85  GETPLHMAAKNGCNEAA----KLLLAHGAFIEAKANEGKTPLDH 124
           G++ LH+A  +          + +    AF+  + N  +TPL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 5e-07
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN 98
           + LH++  + +  +   ++     D   L  QN   +TPLH+A      
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 81  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140
           +   G T LH+A      +   LLL  GA +     +G +P   L+ G  S ++++ L  
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLTWGRPSTRIQQQLGQ 199

Query: 141 HSEEQ 145
            + E 
Sbjct: 200 LTLEN 204

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 14/50 (28%), Positives = 20/50 (40%)

Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN 98
           TPLH++        V  L+        EL+  N   +TPLH+A      
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 14/56 (25%), Positives = 20/56 (35%)

Query: 69  EWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
           +        + AQ   G + LH A+  G     + L+  GA    K     TPL  
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 85  GETPLHMAAKNGCNEAAKLLL----AHGAFIEAKANEGKTPLDH 124
           G+TPLH+A   G   A   L+      G  ++   N  +TPL  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102
            + LH ++G     +V++L+        +   +N + +TPL +A      +  +
Sbjct: 178 SSALHSASGRGLLPLVRTLVRS----GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 4e-07
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 70  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
              +    +  +N  G+T   +A   G NE   L+ A+G
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 84  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
           +G   L  AA  G  E    LL +   + A+   G+T L  
Sbjct: 1   WG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 40

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
           T    A    +      L    + +N  +    +T LH +A  N  E V  LL    N  
Sbjct: 92  TPLILAARLAIEGMVEDLITADADINAADNSG-KTALHWAAAVNNTEAVNILLMHHANR- 149

Query: 76  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
              +AQ+   ETPL +AA+ G  EA+K LL + A  E   +  + P D 
Sbjct: 150 ---DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 47  MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
             +TPL ++A     E  K+LL+         E  +     P  +A++   ++  +LL
Sbjct: 155 KDETPLFLAAREGSYEASKALLDN----FANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 8e-05
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 61  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
           A+++  LL   G +       +  GET LH+AA+    +AAK L
Sbjct: 2   AQVISDLLAQ-GAELNA--TMDKTGETSLHLAARFARADAAKRL 42

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 33/215 (15%), Positives = 60/215 (27%), Gaps = 14/215 (6%)

Query: 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 227
           L   +G   LK +LR + +             K       H+   G PG GKT +A ++ 
Sbjct: 8   LDEYIGQERLKQKLRVYLEA-----------AKARKEPLEHLLLFGPPGLGKTTLAHVIA 56

Query: 228 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 287
             L  V +  T      +  DL               I E        +E   L P  + 
Sbjct: 57  HEL-GVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEH--LYPAMED 113

Query: 288 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE 347
              D  I       ++        +    + P          F       ++  +  ++ 
Sbjct: 114 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQG 173

Query: 348 LAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 382
           + +   +     TE++ L   +        A    
Sbjct: 174 VMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 208

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 6e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 70  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
                + +L  ++  G TPL +A + G  +   +L  H
Sbjct: 118 SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 29/153 (18%)

Query: 16  TIHGCAQSGDLLAFQRLLRENPSLLNERN---------------------------PVMA 48
            + G A  GD+   +RLL       +  N                           P + 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 49  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
            T                 L+       ++   +  G  P+H+A + G       L A  
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123

Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
           + +  +   G TPL  L+   G+  L ++L  H
Sbjct: 124 SDLHRRDARGLTPL-ELALQRGAQDLVDILQGH 155

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 13/161 (8%)

Query: 201 VGARRPPHMAFLGNPGTGKTMVARILGRL---------LYMVGILPTDRVTEVQRTDLVG 251
           +  R   +   +G PG GKT +   L +          L    +L  D    V      G
Sbjct: 38  LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97

Query: 252 EFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 311
           EF            K+    ILF+DE + ++   KAD     ++A   +   +  G++  
Sbjct: 98  EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHC 154

Query: 312 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 352
           + A   +  ++ I  +    RR  K     + + E+   IL
Sbjct: 155 VGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAIL 194

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 45/277 (16%), Positives = 98/277 (35%), Gaps = 30/277 (10%)

Query: 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 228
            ++ G  +   Q+++    + L  R  AL   +G + P  +   G PGTGKT++AR +  
Sbjct: 4   DDVGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60

Query: 229 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQ 285
                  L       +   +++ +  G +    R+  +EA      I+F+DE   + P +
Sbjct: 61  ETGAFFFL-------INGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR 113

Query: 286 KADDKDYGIEALEEIMS----VMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 341
           +    +     + ++++    +     V+V+ A              G   R       +
Sbjct: 114 EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 173

Query: 342 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVD 401
                E+ +I    M    +  L              +AAL  +   +  R++M+   ++
Sbjct: 174 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 233

Query: 402 PMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438
              ++A             +      +T++D    L 
Sbjct: 234 DETIDA-------------EVMNSLAVTMDDFRWALS 257

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 35/256 (13%), Positives = 64/256 (25%), Gaps = 30/256 (11%)

Query: 199 LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG 258
           L+      P    LG PGTGKT+  R L  L           +      +          
Sbjct: 36  LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 95

Query: 259 PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD------------G 306
                  +       F+      +  +         +A      ++             G
Sbjct: 96  SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG 155

Query: 307 GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLY 366
              + +                           F+ +  +++  IL  +           
Sbjct: 156 AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA-------- 207

Query: 367 GFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDEL 425
              L      + I  +I   T  +   + N G       +AR  +D L  S      +  
Sbjct: 208 --GLAEGSYSEDILQMIADITGAQTPLDTNRG-------DARLAIDILYRSAYAAQQNGR 258

Query: 426 RTITLEDLEAGLKLLL 441
           + I  ED+    K +L
Sbjct: 259 KHIAPEDVRKSSKEVL 274

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGL-KVGARRPPHMAFLGNPGTGKTMVARIL 226
           L  + G     ++L+ W       ++       K G+         G PG GKT  A ++
Sbjct: 13  LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72

Query: 227 GRLLYM 232
            + L  
Sbjct: 73  AQELGY 78

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 4e-05
 Identities = 7/38 (18%), Positives = 19/38 (50%)

Query: 67  LLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
           ++E       ++  Q+ + +T   ++  NG  + A++L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 87  TPLHMAAKNGCNEAAKLLLAHGAFIEA 113
             L  AA+ G ++  ++L+A+GA    
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT 30

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 5/150 (3%)

Query: 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNPGTGKTMVARIL 226
            S  V  H  ++  ++  K     +    L           ++  +G  G+GKT++A+ L
Sbjct: 29  FSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 88

Query: 227 GRLLY--MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 284
            + L   +     T         + V   +      +   +++A+ GI+F+DE  ++  +
Sbjct: 89  AKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 148

Query: 285 --QKADDKDYGIEALEEIMSVMDGGKVVVI 312
              ++  +D   E +++ +  +  G +V I
Sbjct: 149 SENRSITRDVSGEGVQQALLKIVEGSLVNI 178

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 51/300 (17%), Positives = 98/300 (32%), Gaps = 28/300 (9%)

Query: 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNPGTGKT 220
           E+ +EL   I+G  + K  +   A  +    RR  L   +     P ++  +G  G GKT
Sbjct: 7   EIVSELDQHIIGQADAKRAV---AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKT 63

Query: 221 MVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-----PKTRRRIKEAEGGILFV 275
            +AR L +             T+      VG+ V                   + GI+F+
Sbjct: 64  EIARRLAK--LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFI 121

Query: 276 DEAYRLIPMQKADDKDYGIEA-LEEIMSVMDGGKV-----------VVIFAGYSEPMKRV 323
           DE  ++    +    D   E    +++ +++G  V           ++  A  +  + R 
Sbjct: 122 DEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 181

Query: 324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED-SLLYGFKLHSSCSMDAIAAL 382
                    R+         ++ +  +IL     + TE    L   +  +          
Sbjct: 182 SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 241

Query: 383 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD-ELRTITLEDLEAGLKLLL 441
           I +       +  N G     L    E L  ++SF   D + +   I    +   L  ++
Sbjct: 242 IAEAAFRVNEKTENIGARR--LHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 299

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 7e-04
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 81  QNMYGETPLHMAAKNGCNEAAKLLLA 106
           ++ +G  P+ +A + G  + A+ L A
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 21/175 (12%), Positives = 47/175 (26%), Gaps = 11/175 (6%)

Query: 146 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 205
            +R         KA+   +         + +          G L+               
Sbjct: 63  AQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYA 122

Query: 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI 265
              +   G   +GKT +   LG       +   D+   V+  + +  +            
Sbjct: 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIA 177

Query: 266 KEAEG-GILFVDEAYRLIPMQKADDKDYGIE-ALEEIMSVMDG----GKVVVIFA 314
           +      ++ +D    +I     +    GI     +++S +         VVI +
Sbjct: 178 RAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIAS 232

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 203 ARRPPHMAFL-GNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKT 261
            RR  +   L G  G GKT +A  L   +    +        +   D+     G      
Sbjct: 35  CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 94

Query: 262 -RRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF 313
             +R K       +    ILF+DE + +I    A      ++A   I  ++  GK+ VI 
Sbjct: 95  FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIG 152

Query: 314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH 353
           +   +    +   +    RR  K     + + EE  +I++
Sbjct: 153 STTYQEFSNIFEKDRALARRFQKID-ITEPSIEETVQIIN 191

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 191 DERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 250
           ++ + AL L         +   G+ GTGK+   R L  LL  +  +    V+     +++
Sbjct: 13  EDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP-NVEMI 71

Query: 251 GEFVGHTGPKTRRRIKEAEGGILFVDEA 278
            ++         R+        L V E 
Sbjct: 72  PDWATVLSTNVIRKPTPVVDLPLGVSED 99

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 38.4 bits (88), Expect = 9e-04
 Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 5/166 (3%)

Query: 199 LKVGARRPP-HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT 257
            K   R P   +   G P +GKT +A  +               +  +            
Sbjct: 32  TKNSDRTPLVSVLLEGPPHSGKTALAAKIA---EESNFPFIKICSPDKMIGFSETAKCQA 88

Query: 258 GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317
             K      +++   + VD+  RL+       +   +     ++ +              
Sbjct: 89  MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 148

Query: 318 EPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTED 362
              ++ +          +   H  +  + E+L + L +  N + ++
Sbjct: 149 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 194

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 212 LGNPGTGKTMVARILGRL-----LYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRR-- 263
            G  G GK +VAR++ +L        V +       ++   +L G   G  TG  + +  
Sbjct: 29  TGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEG 88

Query: 264 RIKEAEGGILFVDE 277
             + A+GG LF+DE
Sbjct: 89  FFELADGGTLFLDE 102

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 29/273 (10%), Positives = 72/273 (26%), Gaps = 47/273 (17%)

Query: 193 RRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL---------------YMVGILP 237
             + L     +        +G  G GKT +A+   + +                     P
Sbjct: 33  LNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 92

Query: 238 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--------AEGGILFVDEAYRLI--PMQKA 287
                        G  +   G      +K             ++ +DE   ++  P   A
Sbjct: 93  NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA 152

Query: 288 DDKDYGIEALEEIMSVMDGGKVVVIFA-GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSE 346
           +D    +   EEI S     ++  +        +  +         ++    H   + S 
Sbjct: 153 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSR 212

Query: 347 ELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVN 406
           EL  IL  +                +      +  + +    +K               +
Sbjct: 213 ELYTILEQRAELGLR---------DTVWEPRHLELISDVYGEDKGGDG-----------S 252

Query: 407 ARENLDL-RLSFDCLDTDELRTITLEDLEAGLK 438
           AR  +   +++ +  +     +++ + +   + 
Sbjct: 253 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 40/283 (14%), Positives = 80/283 (28%), Gaps = 66/283 (23%)

Query: 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 227
           L   +G   +K +L    +             K+      H+   G PG GKT +A I+ 
Sbjct: 8   LDEFIGQENVKKKLSLALEAA-----------KMRGEVLDHVLLAGPPGLGKTTLAHIIA 56

Query: 228 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 287
                  I  T     V++ D+                    G +LF+DE +RL    + 
Sbjct: 57  S-ELQTNIHVTSGPVLVKQGDMA-----------AILTSLERGDVLFIDEIHRLNKAVEE 104

Query: 288 DDKDYGIEALEEIMSVMDGG---------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 338
                  +   +IM                  ++ A     +      +     R     
Sbjct: 105 LLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL-----SSPLRSRFGIIL 159

Query: 339 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 398
             + +  +EL +I+    +    +            + + IA             + + G
Sbjct: 160 ELDFYTVKELKEIIKRAASLMDVE--------IEDAAAEMIA-------------KRSRG 198

Query: 399 LVDPMLVNARENLD-LRLSFDCLDTDELRTITLEDLEAGLKLL 440
                    R  +   +   D L   +   I  + +   +++L
Sbjct: 199 -------TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	100.0
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	100.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.97
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.96
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.92
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.86
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.86
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.85
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.84
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.84
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.84
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.83
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.83
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.82
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.81
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.81
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.8
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.79
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.79
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.79
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.78
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.78
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.78
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.77
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.77
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.77
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.76
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.76
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.75
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.75
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.75
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.75
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.75
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.75
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.73
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.73
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.73
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.73
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.72
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.72
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.72
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.71
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.7
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.68
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.67
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.61
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.59
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.56
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.55
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.54
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.51
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.43
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.35
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.27
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.84
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.57
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.5
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.9
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.86
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.84
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.84
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.8
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.79
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.75
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.74
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.71
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.7
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.69
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.64
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.61
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.58
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.57
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.53
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.53
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.52
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.49
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.46
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.45
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.44
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.42
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.41
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.4
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.34
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.29
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.28
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.28
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.26
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.25
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.23
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.22
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.2
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.19
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.19
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.16
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.15
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.14
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.13
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.06
d1okkd2	207	GTPase domain of the signal recognition particle r	97.04
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.02
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.97
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.92
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.88
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	96.71
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.68
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.68
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.65
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.6
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.4
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	96.36
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.31
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.29
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.21
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.2
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.15
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.13
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.11
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.09
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.0
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	95.95
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.93
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.93
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.92
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	95.88
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.84
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.82
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.79
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.6
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	95.5
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	95.33
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.24
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	95.15
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.14
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.14
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.04
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.01
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.0
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.0
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	94.99
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.99
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	94.88
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.87
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.85
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.83
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.78
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	94.58
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.52
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.42
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.4
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.31
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.22
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	94.12
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.12
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.02
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.99
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	93.91
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.89
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.84
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.83
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.83
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.8
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.79
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.73
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.73
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.73
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.7
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.67
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.65
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.63
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	93.55
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.53
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.45
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.39
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.38
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.38
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.37
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.36
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.33
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.31
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.27
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.26
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.22
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.18
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.15
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.11
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.11
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.08
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.03
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.98
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.92
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	92.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.89
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.89
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.84
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.75
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.73
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.71
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.69
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.65
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.65
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.63
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.61
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.52
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.5
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	92.46
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.45
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.42
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.35
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.33
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.31
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.29
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.24
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.24
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.22
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.17
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.12
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.06
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.02
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	92.01
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.83
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.81
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.8
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.79
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.76
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.75
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	91.7
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.65
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.54
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	91.52
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.5
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.47
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.38
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.21
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.1
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	91.04
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.99
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.93
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.88
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	90.85
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	90.85
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.73
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	90.73
d1qzma_	94	ATPase domain of protease Lon (La) {Escherichia co	90.45
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.37
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.34
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.25
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.19
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.18
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.14
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	89.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.83
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	89.76
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	89.69
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.68
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	89.47
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.33
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.2
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.17
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.04
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	88.76
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.47
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	88.35
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.15
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.08
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.03
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.96
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	87.77
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.55
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	87.38
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.95
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.44
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	85.88
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	85.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	85.55
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	85.3
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.22
d1z3ix2	298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	85.01
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.79
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	84.7
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	84.13
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.12
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	84.09
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	82.77
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	82.19
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	81.58
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.74
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	80.39
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	80.14

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-33  Score=255.28  Aligned_cols=232  Identities=21%  Similarity=0.297  Sum_probs=179.7

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++++|.++++++|.+.+...    .+++.+...+...+.++||+||||||||++|++||++++.       +++.++
T Consensus         9 ~t~~Di~Gl~~~k~~l~e~v~~~----~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~-------~~~~i~   77 (256)
T d1lv7a_           9 TTFADVAGCDEAKEEVAELVEYL----REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTIS   77 (256)
T ss_dssp             CCGGGSCSCHHHHHHTHHHHHHH----HCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEC
T ss_pred             CCHHHHhchHHHHHHHHHHHHHH----HCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCC-------CEEEEE
Confidence            45889999999999999866543    3455555667778899999999999999999999999987       999999


Q ss_pred             cccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCC---chhHHHHHHHHHhhccC----CcEEEEEec
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG  315 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~~~~i~a~  315 (445)
                      ++++.+.|+|++++.++++|+.|+   ++||||||+|.+++.+++..   .+...++++.|+..|+.    ..+++|++|
T Consensus        78 ~~~l~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatT  157 (256)
T d1lv7a_          78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT  157 (256)
T ss_dssp             SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred             hHHhhhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence            999999999999999999998874   48999999999998776432   34555678889888873    457777776


Q ss_pred             CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      +....     .||+++|  ||+..|+|++|+.++|.+|++.++.+.         .+..+++.+.++..+.+        
T Consensus       158 n~~~~-----ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~---------~~~~~~~~~~la~~t~G--------  215 (256)
T d1lv7a_         158 NRPDV-----LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAAIIARGTPG--------  215 (256)
T ss_dssp             SCTTT-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCTT--------
T ss_pred             CCccc-----CCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCC---------CcCcccCHHHHHHhCCC--------
Confidence            64433     3899987  999999999999999999999998775         33456666665543332        


Q ss_pred             ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                       .+++++++++.+|..... +        ++...|+.+||.+|++++
T Consensus       216 -~s~adi~~l~~~A~~~a~-~--------~~~~~i~~~d~~~Al~rv  252 (256)
T d1lv7a_         216 -FSGADLANLVNEAALFAA-R--------GNKRVVSMVEFEKAKDKI  252 (256)
T ss_dssp             -CCHHHHHHHHHHHHHHHH-H--------TTCSSBCHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHH-H--------cCCCccCHHHHHHHHHHH
Confidence             357888999987733221 1        223469999999999875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.5e-33  Score=249.48  Aligned_cols=229  Identities=23%  Similarity=0.320  Sum_probs=175.0

Q ss_pred             HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|++|+|.+++|++|++.+..+..+....+.+    ...+.++||+||||||||++|++||++++.       +++.++
T Consensus         6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g----~~~~~giLl~GppGtGKT~la~aia~~~~~-------~~~~i~   74 (247)
T d1ixza_           6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG----ARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS   74 (247)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT----CCCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred             CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcC----CCCCceEEEecCCCCChhHHHHHHHHHcCC-------CEEEEE
Confidence            358899999999999998776655554444443    457789999999999999999999999876       999999


Q ss_pred             cccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEec
Q 013316          246 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  315 (445)
Q Consensus       246 ~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~  315 (445)
                      ++++.+.|+|++++.++++|+.|.   ++||||||+|.++.++++.   .......+++.|+..|++    .++++|++|
T Consensus        75 ~~~l~~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tT  154 (247)
T d1ixza_          75 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT  154 (247)
T ss_dssp             HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred             hHHhhhccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence            999999999999999999998874   5899999999999877543   234455678888888863    567777776


Q ss_pred             CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                      +....     .||+++|  ||+.+|+|+.|+.+++.+|++.++.+.         ....+.+.+.++..+.+        
T Consensus       155 n~~~~-----ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~---------~~~~~~~~~~la~~t~g--------  212 (247)
T d1ixza_         155 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALLAKRTPG--------  212 (247)
T ss_dssp             SCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCTT--------
T ss_pred             CCccc-----cCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhccc---------CCccccCHHHHHHHCCC--------
Confidence            65332     3899986  999999999999999999999999875         33455555555544333        


Q ss_pred             ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                       ..++++++++..|.-....         .+...|+.+||.+|+
T Consensus       213 -~s~~di~~lv~~A~l~a~~---------~~~~~i~~~d~~~A~  246 (247)
T d1ixza_         213 -FVGADLENLLNEAALLAAR---------EGRRKITMKDLEEAA  246 (247)
T ss_dssp             -CCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHT
T ss_pred             -CCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHhh
Confidence             3477888888877332111         123479999999986

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.3e-32  Score=250.74  Aligned_cols=239  Identities=20%  Similarity=0.321  Sum_probs=181.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++++|++|++.+.   ++..+++.+...+...+.++|||||||||||++|+++|++++.       +++.+++
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~---~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~-------~~~~i~~   71 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVE---LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING   71 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHH---HHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred             ChhhhccHHHHHHHHHHHHH---HHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCC-------eEEEEEc
Confidence            37899999999999999644   3333444444455667889999999999999999999999887       9999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCchh
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP  319 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~~  319 (445)
                      +.+.+.++|++...++++|+.|   .++||||||+|.+.+++.++.++....++..++..++.    ..+++|++|+...
T Consensus        72 ~~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~  151 (258)
T d1e32a2          72 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN  151 (258)
T ss_dssp             HHHTTSCTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGG
T ss_pred             hhhcccccccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCcc
Confidence            9999999999999999999876   56999999999999988765566666677777666543    5577777766544


Q ss_pred             HHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          320 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       320 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ..     ||++++  ||+.+|+|+.|+.++|.+|++.++++.         .+..+++.+.++..+.+++         +
T Consensus       152 ~l-----d~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~---------~~~~~~~~~~la~~t~G~s---------~  208 (258)
T d1e32a2         152 SI-----DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETHGHV---------G  208 (258)
T ss_dssp             GS-----CGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTS---------CBCTTCCHHHHHHHCTTCC---------H
T ss_pred             cc-----chhhhhcccccceeECCCCCHHHHHHHhhhhccCc---------ccccccchhhhhhcccCCC---------H
Confidence            43     899998  999999999999999999999998764         3455666666666655544         6


Q ss_pred             hhhHHHHHHHHHhhhhhh----cc--CCCC--hhhhhhccHHHHHHHHH
Q 013316          398 GLVDPMLVNARENLDLRL----SF--DCLD--TDELRTITLEDLEAGLK  438 (445)
Q Consensus       398 r~l~~~~~~~~~~~~~~~----~~--~~~~--~~~~~~i~~~d~~~a~~  438 (445)
                      +++++++.+|......+.    ..  ....  ......||.+||..|++
T Consensus       209 adl~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~  257 (258)
T d1e32a2         209 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS  257 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCSSCCBHHHHHHCCBCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhccCccCHHHHHHHhC
Confidence            677777766644332221    11  1111  12345699999999985

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9.3e-30  Score=232.29  Aligned_cols=239  Identities=16%  Similarity=0.229  Sum_probs=166.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|.++++++|.+.+.   ++..+++.+...+...+.++||+||||||||++|+++|.+++.       +|+.+++
T Consensus         5 ~f~di~G~~~~k~~l~~~i~---~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~-------~~~~~~~   74 (265)
T d1r7ra3           5 TWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG   74 (265)
T ss_dssp             SCSSCSSSSCCCCHHHHHTH---HHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred             CHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCC-------cEEEEEH
Confidence            47789999999999998653   3333344433445667889999999999999999999999987       9999999


Q ss_pred             ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCC---chhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAGY  316 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~~~~i~a~~  316 (445)
                      +++.+.+.|.+...++.+|..|   .++||||||+|.+..+++...   .....++++.|+..|+.    .++++|++|+
T Consensus        75 ~~l~~~~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn  154 (265)
T d1r7ra3          75 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN  154 (265)
T ss_dssp             HHHHTSCTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCB
T ss_pred             HHhhhccccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence            9999999999999999999776   469999999999998764322   23344577889988863    4577777765


Q ss_pred             chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ....     .||++++  ||+.+|+|+.|+.++|.+|++.++++.         .+..+++.+.++..+.++        
T Consensus       155 ~~~~-----ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~---------~~~~~~~l~~la~~t~g~--------  212 (265)
T d1r7ra3         155 RPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---------PVAKDVDLEFLAKMTNGF--------  212 (265)
T ss_dssp             SCTT-----TSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-------------CCCCHHHHHHHCSS--------
T ss_pred             Cchh-----CCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccC---------CchhhhhHHHHHhcCCCC--------
Confidence            4443     2899987  999999999999999999999988764         223455556666555444        


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCC-------CChhhhhhccHHHHHHHHH
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDC-------LDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~d~~~a~~  438 (445)
                       +++++.+++.+|......+.....       .......+++.+|+..++.
T Consensus       213 -s~~di~~lv~~A~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~i~  262 (265)
T d1r7ra3         213 -SGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIR  262 (265)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHC------------------------CHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccchHHHc
Confidence             477788888777543322221111       0112234566677666654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=2.7e-25  Score=207.19  Aligned_cols=259  Identities=19%  Similarity=0.244  Sum_probs=166.2

Q ss_pred             HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCC-CCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316          163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  240 (445)
Q Consensus       163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~  240 (445)
                      +....|++ ++||+++++.|...+..   +..+..+.... ...++.++||+||||||||++|+++|+.++.       +
T Consensus         7 ~i~~~L~~~ViGQd~A~~~l~~av~~---~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~-------~   76 (309)
T d1ofha_           7 EIVSELDQHIIGQADAKRAVAIALRN---RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P   76 (309)
T ss_dssp             HHHHHHHTTCCSCHHHHHHHHHHHHH---HHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------C
T ss_pred             HHHHHhcCcccChHHHHHHHHHHHHH---HHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcccc-------c
Confidence            34556666 89999999998875421   11111111000 0236789999999999999999999999876       9


Q ss_pred             eEEeeccccc--ccccCCchhHHHHHHHHcc--------CcEEEEcCccccccCCCCCCchhH-HHHHHHHHhhccCC--
Q 013316          241 VTEVQRTDLV--GEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGG--  307 (445)
Q Consensus       241 ~~~~~~~~l~--~~~~g~~~~~~~~~~~~a~--------~~il~lDEid~l~~~~~~~~~~~~-~~~~~~ll~~~~~~--  307 (445)
                      |+.++++.+.  +.+.|+++..++.+|..+.        +|||||||||++++++.+...+.. ..+++.||..+++.  
T Consensus        77 ~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~  156 (309)
T d1ofha_          77 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV  156 (309)
T ss_dssp             EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred             hhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEE
Confidence            9999999987  5588999999999998874        499999999999998876554443 34788899999863  


Q ss_pred             ----------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccccc----ccccccccCCc
Q 013316          308 ----------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED----SLLYGFKLHSS  373 (445)
Q Consensus       308 ----------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~----~~~~~~~~~~~  373 (445)
                                ++.+|+++.. ........+|+++.||+.++.|+.|+..++.+|+..+.......    ....+..  ..
T Consensus       157 ~~~~~~i~~s~ilfi~~ga~-~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~~~l~~~~~~~~~~~~~~--~~  233 (309)
T d1ofha_         157 STKHGMVKTDHILFIASGAF-QVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVN--IA  233 (309)
T ss_dssp             EETTEEEECTTCEEEEEECC-SSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCE--EE
T ss_pred             ecCCeEEEccceeEEeccch-hhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cc
Confidence                      2345544321 12222334899999999999999999999999986433221110    1111112  12


Q ss_pred             ccHHHHHHHHHHHH--HHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          374 CSMDAIAALIEKET--TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       374 ~~~~~l~~~~~~~~--~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      .+..+.........  ....+..| +|.++.++++..+........   .......|+.+.+.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~G-aR~L~~~ie~i~~~~~~~~~~---~~~~~v~i~~~~v~~~l~  296 (309)
T d1ofha_         234 FTTDAVKKIAEAAFRVNEKTENIG-ARRLHTVMERLMDKISFSASD---MNGQTVNIDAAYVADALG  296 (309)
T ss_dssp             ECHHHHHHHHHHHHHHHHHSCCCT-THHHHHHHHHHSHHHHHHGGG---CTTCEEEECHHHHHHHTC
T ss_pred             cchHHHHHHHHHHHHHhhcchhcC-chHHHHHHHHHHHHHHccccc---cCCCEEEECHHHHHHhcC
Confidence            33334333322221  11122233 788888888875544332211   122334567777766654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.9e-23  Score=184.35  Aligned_cols=207  Identities=18%  Similarity=0.225  Sum_probs=149.1

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++++++.|..++......           ...++++|||||||||||++|+++|++++.       ++..++.
T Consensus         7 ~~~divGqe~~~~~l~~~i~~~~~~-----------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~-------~~~~~~~   68 (238)
T d1in4a2           7 SLDEFIGQENVKKKLSLALEAAKMR-----------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSG   68 (238)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHH-----------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred             cHHHcCChHHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCcHHHHHHHHHhccCC-------CcccccC
Confidence            4788999999999999987654321           345679999999999999999999999987       7777776


Q ss_pred             ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------------------
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------------------  306 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------------  306 (445)
                      +...      ....+...+... +++++|+||+|.+.+           ..++.++..++.                   
T Consensus        69 ~~~~------~~~~~~~~~~~~~~~~~~~ide~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  131 (238)
T d1in4a2          69 PVLV------KQGDMAAILTSLERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRID  131 (238)
T ss_dssp             TTCC------SHHHHHHHHHHCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC--------------
T ss_pred             cccc------cHHHHHHHHHhhccCCchHHHHHHHhhh-----------HHHhhcccceeeeeeeeeecCcccccccccC
Confidence            6553      234455555444 569999999999976           333334443332                   


Q ss_pred             -CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316          307 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  385 (445)
Q Consensus       307 -~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (445)
                       ..+++|++|+.....     ++++++||...+.|+.|+.+++..+++..+....           ..++++++.. +..
T Consensus       132 ~~~~~~I~at~~~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~l~~-i~~  194 (238)
T d1in4a2         132 IQPFTLVGATTRSGLL-----SSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-----------VEIEDAAAEM-IAK  194 (238)
T ss_dssp             -CCCEEEEEESCGGGS-----CHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHH-HHH
T ss_pred             CCCeEEEEecCCCccc-----cccceeeeeEEEEecCCCHHHHHHHHHHhhhhcc-----------chhhHHHHHH-HHH
Confidence             246788887776543     7889999999999999999999999998877642           2455666664 445


Q ss_pred             HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      .+      .|+.|.+.++++++...+...         +...||.+++.++++.+
T Consensus       195 ~s------~gd~R~ai~~l~~~~~~~~~~---------~~~~it~~~~~~al~~l  234 (238)
T d1in4a2         195 RS------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL  234 (238)
T ss_dssp             TS------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred             hC------CCCHHHHHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHhh
Confidence            55      456667777787764433222         11258899999888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.6e-23  Score=166.83  Aligned_cols=108  Identities=26%  Similarity=0.290  Sum_probs=100.9

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 013316           14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA   93 (445)
Q Consensus        14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~   93 (445)
                      .|||++||..|+.++++.|+. .|++++..+. .|+||||+|+..|+.+++++|++.    |++++.+|..|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~~~-~g~t~lh~A~~~~~~~~~~~ll~~----g~din~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA-KGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLK----GADINAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT-TTCCCCCCSS-SSCCTTHHHHHHSTTTHHHHHHHS----SCTTTCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHH-hhhccccccc-cccccccccccccccccccccccc----cceeeecccccccchhhhh
Confidence            489999999999999998885 5899999997 799999999999999999999995    8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC
Q 013316           94 KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG  128 (445)
Q Consensus        94 ~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~  128 (445)
                      ..|+.+++++|+++|++++.+|.+|.||| ++|..
T Consensus        77 ~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l-~~a~~  110 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADKTVKGPDGLTAL-EATDN  110 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCSSSSSSSTCCCC-CTCSS
T ss_pred             hcCchhhhhhhhcccccceeeCCCCCCHH-HHHhH
Confidence            99999999999999999999999999999 56543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.4e-21  Score=173.96  Aligned_cols=242  Identities=16%  Similarity=0.209  Sum_probs=172.1

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEEe
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEV  244 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~~  244 (445)
                      ++.++|.+.-..++.+.+.                .....+++|.||||+|||++++.+|+.+...   ..+....++.+
T Consensus        17 ld~~igRd~Ei~~l~~iL~----------------r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l   80 (268)
T d1r6bx2          17 IDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL   80 (268)
T ss_dssp             SCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred             CCcccChHHHHHHHHHHHh----------------cCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEe
Confidence            4558999877766666432                3456799999999999999999999988653   23455679999


Q ss_pred             ecccccc--cccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchh
Q 013316          245 QRTDLVG--EFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP  319 (445)
Q Consensus       245 ~~~~l~~--~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~  319 (445)
                      +.+.+++  +|.|+-+..+..+++++   .+.||||||+|.+...++++++  ..++-+.|...+..+.+.+|++||+..
T Consensus        81 ~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~--~~d~a~~Lkp~L~rg~i~vIgatT~ee  158 (268)
T d1r6bx2          81 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKPLLSSGKIRVIGSTTYQE  158 (268)
T ss_dssp             CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHHHHHHHSSCSSSCCCEEEEEECHHH
T ss_pred             eechHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCc--cccHHHHhhHHHhCCCCeEEEeCCHHH
Confidence            9999886  58888888888888775   4489999999999876553332  335667777889999999999999999


Q ss_pred             HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchh
Q 013316          320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  399 (445)
Q Consensus       320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~  399 (445)
                      +..+++.||+|.+|| .+|.++.|+.++...|++.........   +    ...++++++..... .+.-.+....-...
T Consensus       159 y~~~~e~d~al~rrF-~~I~V~Eps~e~t~~IL~~~~~~~e~~---h----~v~~~~~al~~~v~-ls~ryi~~~~~PdK  229 (268)
T d1r6bx2         159 FSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAH---H----DVRYTAKAVRAAVE-LAVKYINDRHLPDK  229 (268)
T ss_dssp             HHCCCCCTTSSGGGE-EEEECCCCCHHHHHHHHHHHHHHHHHH---H----TCCCCHHHHHHHHH-HHHHHCTTSCTTHH
T ss_pred             HHHHHhhcHHHHhhh-cccccCCCCHHHHHHHHHHhhHHHhcc---C----CEEeChHHHHHHHH-HHHhhccCCCCCcH
Confidence            999999999999999 999999999999999998866554322   1    23455556654332 22222222222334


Q ss_pred             hHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316          400 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  441 (445)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~  441 (445)
                      ...+++.+........     .......|+.+|+...+.++.
T Consensus       230 AIdllDea~a~~~~~~-----~~~~~~~i~~~di~~~i~~~~  266 (268)
T d1r6bx2         230 AIDVIDEAGARARLMP-----VSKRKKTVNVADIESVVARIA  266 (268)
T ss_dssp             HHHHHHHHHHHHHHSS-----SCCCCCSCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhc-----cccCcccCCHHHHHHHHHHHh
Confidence            4566776644332211     111234689999999888764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4e-22  Score=161.56  Aligned_cols=123  Identities=26%  Similarity=0.272  Sum_probs=109.2

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 013316           15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK   94 (445)
Q Consensus        15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~   94 (445)
                      +.||.||..|+.++++.|+. .|+++|.++. .|+||||+|+..|+.+++++|+++    |++++.+|.+|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~~----g~~~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY-EVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS-TTSSCCCCCT-TSCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-cCCCcccccc-cccccccccccccccccccccccc----ccccccccccCcccccccch
Confidence            67999999999999998875 6899999997 799999999999999999999995    88999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccc-CCCChhhh-hhcCCCChHHHHHHHhhhh
Q 013316           95 NGCNEAAKLLLAHGAFIEAKAN-EGKTPLDH-LSNGPGSAKLRELLLWHSE  143 (445)
Q Consensus        95 ~g~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~-~a~~~~~~~i~~~ll~~~~  143 (445)
                      +|+.+++++|+++|++++..+. .++||++. .+...++.+++++|+....
T Consensus        77 ~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            9999999999999999998775 58888733 3456788999999976543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=3.8e-21  Score=172.90  Aligned_cols=207  Identities=21%  Similarity=0.245  Sum_probs=142.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|+++++++|+.++...+           .....+.++||+||||||||++|+++|++++.       ++..++.
T Consensus         7 ~~ddivGq~~~~~~L~~~i~~~~-----------~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~-------~~~~~~~   68 (239)
T d1ixsb2           7 TLDEYIGQERLKQKLRVYLEAAK-----------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSG   68 (239)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHHHT-----------TSSSCCCCEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEET
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHH-----------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CeEeccC
Confidence            57889999999999999876542           12346789999999999999999999999887       7888887


Q ss_pred             ccccccccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc-------------------
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-------------------  305 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~-------------------  305 (445)
                      +....      .......+...  .++|+||||+|.+.+           ..+..++..++                   
T Consensus        69 ~~~~~------~~~~~~~~~~~~~~~~i~~iDe~~~~~~-----------~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~  131 (239)
T d1ixsb2          69 PAIEK------PGDLAAILANSLEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRL  131 (239)
T ss_dssp             TTCCS------HHHHHHHHHTTCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHHSEEEEECSCTTCCCEEEE
T ss_pred             Ccccc------chhhHHHHHhhccCCCeeeeecccccch-----------hHHHhhhhhhhhhhhhhhhccchhhhhccc
Confidence            66522      12222233322  457999999999876           33344444433                   


Q ss_pred             -CCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH
Q 013316          306 -GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  384 (445)
Q Consensus       306 -~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (445)
                       ..++++|+++++....     .++.++|+...+.|+.|+.+++..++...+....           ..++.+.+. .+.
T Consensus       132 ~~~~~~~i~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------i~~~~~~l~-~ia  194 (239)
T d1ixsb2         132 ELPRFTLIGATTRPGLI-----TAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAAL-EIG  194 (239)
T ss_dssp             ECCCCEEEEEESCCSSC-----SCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGC-----------CCBCHHHHH-HHH
T ss_pred             CCCCEEEEeeccCcccc-----cchhhcccceeeEeeccChhhhhHHHHHHHHHhC-----------CccchHHHH-HHH
Confidence             2345677766554443     4566777779999999999999999998887642           244555655 555


Q ss_pred             HHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          385 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       385 ~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      ..+      .|+.|.+.++++.+......         .+...||.+++.+++..+
T Consensus       195 ~~s------~gd~R~a~~~l~~~~~~a~~---------~~~~~It~~~~~~~l~~l  235 (239)
T d1ixsb2         195 RRS------RGTMRVAKRLFRRVRDFAQV---------AGEEVITRERALEALAAL  235 (239)
T ss_dssp             HHT------TSSHHHHHHHHHHHHHHHTT---------SCCSCBCHHHHHHHHHHH
T ss_pred             HHc------CCCHHHHHHHHHHHHHHHHH---------hCCCCcCHHHHHHHHhhh
Confidence            555      34566677777776432211         112368999999888653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=163.20  Aligned_cols=121  Identities=21%  Similarity=0.271  Sum_probs=110.5

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCC-cHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE-TPLH   90 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~-tpLh   90 (445)
                      .+.++||+||..|+.++++.|+. .|+++|..+. .|.||||+|+ .|+.+++++|+++    |++++.++..+. ||||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~~~-~g~t~l~~a~-~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLE-AGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLH----GAEPNCADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTT----TCCCCCCCTTTCCCHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHH-cCCccccccc-cccccccccc-ccccccccccccc----ccccccccccccccccc
Confidence            35689999999999999998885 6899999997 7999999765 7999999999995    889999988876 6999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW  140 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~  140 (445)
                      +|+..|+.+++++|+++|++++.+|.+|+||| ++|...++.+++++|++
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l-~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPV-DLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccCCCCCHH-HHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999999999999 78888999999999875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.86  E-value=8e-24  Score=194.45  Aligned_cols=151  Identities=15%  Similarity=0.090  Sum_probs=114.0

Q ss_pred             CCCCCCee-EeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCcc
Q 013316          202 GARRPPHM-AFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAY  279 (445)
Q Consensus       202 ~~~~~~~v-ll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid  279 (445)
                      +...+.++ ||+||||||||++|+++|.+++.     ..+|+.++.+++.++|+|+++++++++|+++ .++||||||||
T Consensus       118 ~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~-----~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEid  192 (321)
T d1w44a_         118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK  192 (321)
T ss_dssp             TEEEESEEEEEECSSSSCHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred             hcccCCceEEEECCCCccHHHHHHHHHHHhcC-----CCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehhh
Confidence            34455665 55899999999999999999873     1278999999999999999999999999888 46999999999


Q ss_pred             ccccCCCCCC-chhHHHHHHHHHhhccC----CcEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHH
Q 013316          280 RLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKIL  352 (445)
Q Consensus       280 ~l~~~~~~~~-~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il  352 (445)
                      ++.++|+++. .....+.+++||..||+    ..++||+|||+...+..+  ++++.+  ||++.+.++.|+.+++.+|+
T Consensus       193 ~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i--~~~~~r~~Rf~~~v~v~~pd~~~r~~il  270 (321)
T d1w44a_         193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKI--VELVKEASRSNSTSLVISTDVDGEWQVL  270 (321)
T ss_dssp             TTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHH--HHHHHHHHHHSCSEEEEECSSTTEEEEE
T ss_pred             hhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccch--hhhhhccCcccceeecCCCChHHHHHHH
Confidence            9999886433 34445789999999974    568999999864332111  344444  99999999999999999998


Q ss_pred             HHHHhcc
Q 013316          353 HIKMNNQ  359 (445)
Q Consensus       353 ~~~l~~~  359 (445)
                      ..+....
T Consensus       271 ~~~~~~~  277 (321)
T d1w44a_         271 TRTGEGL  277 (321)
T ss_dssp             EECBTTC
T ss_pred             HHhccCc
Confidence            7655443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.86  E-value=1.2e-21  Score=175.77  Aligned_cols=165  Identities=13%  Similarity=0.165  Sum_probs=112.8

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      ++|.++..+.+.+......-..+.      ....++.++||+||||||||++|++||++++.       +|+.+++++..
T Consensus        11 ~i~~~~~i~~i~~~~~~~~~~~~~------~~~~p~~~vLL~GppGtGKT~la~alA~~~~~-------~~~~i~~~~~~   77 (246)
T d1d2na_          11 IIKWGDPVTRVLDDGELLVQQTKN------SDRTPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPDKM   77 (246)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHH------CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGGGC
T ss_pred             CcCcCHHHHHHHHHHHHHHHHHhc------cCCCCCeEEEEECcCCCCHHHHHHHHhhcccc-------ccccccccccc
Confidence            777776555555433211111111      12345678999999999999999999999887       99999998766


Q ss_pred             ccccCCc-hhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCchhHH
Q 013316          251 GEFVGHT-GPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMK  321 (445)
Q Consensus       251 ~~~~g~~-~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~~~~~  321 (445)
                      ..+.+.+ ...++++|+.|.   ++||||||||.+.+.+..++ .....+++.|+..+++     .+++||++|+.....
T Consensus        78 ~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~l  156 (246)
T d1d2na_          78 IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL  156 (246)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred             ccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhccccc-chhHHHHHHHHHHhcCCCccccceeeeeccCChhhc
Confidence            5555443 355788888774   48999999999988665433 2334677788888875     246777777654332


Q ss_pred             HHHhhCcccccccccceeCCCCC-HHHHHHHHH
Q 013316          322 RVIASNEGFCRRVTKFFHFNDFN-SEELAKILH  353 (445)
Q Consensus       322 ~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~  353 (445)
                      .    .+.+++||+..|+||.++ .+++.+++.
T Consensus       157 d----~~~~~~rF~~~i~~P~~~~r~~il~~l~  185 (246)
T d1d2na_         157 Q----EMEMLNAFSTTIHVPNIATGEQLLEALE  185 (246)
T ss_dssp             H----HTTCTTTSSEEEECCCEEEHHHHHHHHH
T ss_pred             c----chhhcCccceEEecCCchhHHHHHHHHH
Confidence            1    245788999999997775 445544443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.85  E-value=8.6e-22  Score=176.75  Aligned_cols=214  Identities=17%  Similarity=0.156  Sum_probs=157.1

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      .||+++.++++.+.+...              +....+|+++||+|||||.+|++||..+..    ...+++.++|+.+.
T Consensus         2 ~v~~S~~~~~~~~~~~~~--------------a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~----~~~~~~~~~~~~~~   63 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKLSDR----SKEPFVALNVASIP   63 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHHSTT----TTSCEEEEETTTSC
T ss_pred             eEecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCC----cccccccchhhhhh
Confidence            689999999988877655              456778999999999999999999987654    33488899987643


Q ss_pred             -----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013316          251 -----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------  307 (445)
Q Consensus       251 -----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------  307 (445)
                           ..++|...       .....+|+.+.+|+|||||||.+..           ..|..|+..++++           
T Consensus        64 ~~~~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~~~~~~~  132 (247)
T d1ny5a2          64 RDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEI  132 (247)
T ss_dssp             HHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBE
T ss_pred             hcccHHHhcCcccCCcCCcccccCCHHHccCCCEEEEeChHhCCH-----------HHHHHHHHHHHhCCEEECCCCCce
Confidence                 23444321       1223478899999999999999987           6677888777532           


Q ss_pred             --cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316          308 --KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  380 (445)
Q Consensus       308 --~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~  380 (445)
                        ++.+|++++.+......  ..++.|..|+. ..|.+|++.  .+|+..|+++++++...+.+..    ...++++++.
T Consensus       133 ~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~----~~~ls~~al~  208 (247)
T d1ny5a2         133 EVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE----VEGFTKSAQE  208 (247)
T ss_dssp             ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC----CCEECHHHHH
T ss_pred             ecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCC----CCCCCHHHHH
Confidence              35677777765544322  12456666764 568999996  7899999999999876554422    3467888999


Q ss_pred             HHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHH
Q 013316          381 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA  435 (445)
Q Consensus       381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  435 (445)
                      .+..+.|      |||.++|+++++++....            .-..|+.+|+..
T Consensus       209 ~L~~~~W------PGNl~EL~~~l~~a~~~~------------~~~~I~~~dl~~  245 (247)
T d1ny5a2         209 LLLSYPW------YGNVRELKNVIERAVLFS------------EGKFIDRGELSC  245 (247)
T ss_dssp             HHHHSCC------TTHHHHHHHHHHHHHHHC------------CSSEECHHHHHH
T ss_pred             HHHhCCC------CCHHHHHHHHHHHHHHhC------------CCCeECHHHccc
Confidence            8888887      999999999999984321            112588888754

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.3e-21  Score=171.41  Aligned_cols=149  Identities=25%  Similarity=0.269  Sum_probs=119.5

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHHHh--------------------------------hCCCCcCCCCCCCCCh
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLR--------------------------------ENPSLLNERNPVMAQT   50 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~--------------------------------~~~~~~~~~~~~~g~t   50 (445)
                      +...+..+ .|+||||+||..|+.++++.++.                                ..+.+++..+. .|+|
T Consensus        27 ~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~-~g~t  105 (223)
T d1uoha_          27 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCT  105 (223)
T ss_dssp             GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCC
T ss_pred             CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCC-CCCc
Confidence            45556655 58899999998888877776544                                24466777776 6889


Q ss_pred             HHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC
Q 013316           51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG  130 (445)
Q Consensus        51 pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~  130 (445)
                      |||+|+.+|+.+++++|+++    |++++.++.+|.||||+|+..++.+++++|+..|++++.+|.+|+||| +.|+..+
T Consensus       106 pL~~A~~~~~~e~~~~Ll~~----g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL-~~Aa~~g  180 (223)
T d1uoha_         106 PLHYAASKNRHEIAVMLLEG----GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL-HLACDEE  180 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHH-HHHHHTT
T ss_pred             hhhHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCcee-ccccccC
Confidence            99999988889999988885    778888888888999999999988888888888999999999999998 7777778


Q ss_pred             ChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316          131 SAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus       131 ~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                      +.+++++|++.|+++..++..+.++...
T Consensus       181 ~~~~v~~LL~~Gad~~~~d~~g~tpl~~  208 (223)
T d1uoha_         181 RVEEAKLLVSQGASIYIENKEEKTPLQV  208 (223)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             cHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            8899999998888877777666555443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.9e-21  Score=169.28  Aligned_cols=131  Identities=24%  Similarity=0.305  Sum_probs=118.3

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   80 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~   80 (445)
                      ++|++++..+ .|.||||+|+..|+.++++.|++ .|.+++..+. .|.||||+|+..++.+++++|+..    +.+++.
T Consensus        91 ~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~-~g~d~~~~~~-~~~t~L~~a~~~~~~~~~~~L~~~----~~~i~~  164 (223)
T d1uoha_          91 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDH-YEATAMHRAAAKGNLKMIHILLYY----KASTNI  164 (223)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCSCC
T ss_pred             ccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHH-CCCCCCCcCC-CCCccchhhhhcCCcchhhhhccc----cceeee
Confidence            4677777766 69999999999999999998874 6889999987 799999999999999999999985    789999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316           81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW  140 (445)
Q Consensus        81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~  140 (445)
                      +|.+|+||||+|+..|+.+++++|++.|++++.+|.+|+||| ++|. .++.+++++|++
T Consensus       165 ~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl-~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHCC-TTHHHHHHHHHC
T ss_pred             ccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHH-HHHH-CCCHHHHhcccC
Confidence            999999999999999999999999999999999999999999 6664 588888888863

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=5.2e-20  Score=170.81  Aligned_cols=219  Identities=19%  Similarity=0.276  Sum_probs=154.5

Q ss_pred             HHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316          164 LENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  242 (445)
Q Consensus       164 ~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~  242 (445)
                      ++..|++ ++||+++++.|.+.+..       ...++.....+...++|+||||||||.+|+.||+.+...    ..+|+
T Consensus        17 l~~~L~~~v~GQ~~ai~~v~~~i~~-------~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~----~~~~~   85 (315)
T d1qvra3          17 LEEELHKRVVGQDEAIRAVADAIRR-------ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMI   85 (315)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHH-------HGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS----GGGEE
T ss_pred             HHHHhcCeEeCHHHHHHHHHHHHHH-------HhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCC----CcceE
Confidence            4445544 99999999988875432       223333333344468899999999999999999998432    22888


Q ss_pred             Eeecccccc-----c-------ccCCc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--
Q 013316          243 EVQRTDLVG-----E-------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--  307 (445)
Q Consensus       243 ~~~~~~l~~-----~-------~~g~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--  307 (445)
                      .++++.+..     .       |+|+. +..+.+.+.....+|+||||||++++           ++++.|++.++++  
T Consensus        86 ~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~-----------~v~~~ll~~l~~g~~  154 (315)
T d1qvra3          86 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRL  154 (315)
T ss_dssp             EECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEE
T ss_pred             EEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCH-----------HHHHHHHHHhccCce
Confidence            888876542     2       34432 24567778888899999999999987           8899999999864  


Q ss_pred             -----------cEEEEEecCchhHHH---------------------HHhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316          308 -----------KVVVIFAGYSEPMKR---------------------VIASNEGFCRRVTKFFHFNDFNSEELAKILHIK  355 (445)
Q Consensus       308 -----------~~~~i~a~~~~~~~~---------------------~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~  355 (445)
                                 +.++|++++-.....                     --...|+|..|||.++.|.+++.+++..|+...
T Consensus       155 ~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~  234 (315)
T d1qvra3         155 TDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ  234 (315)
T ss_dssp             CCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHH
T ss_pred             eCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHH
Confidence                       246777666321100                     001248999999999999999999999999998


Q ss_pred             HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      +.+...++...++.  ..++++++.++.+..+.   ...| +|.++..+++.+..
T Consensus       235 l~~l~~rl~~~~i~--l~i~~~~~~~L~~~~y~---~~~G-AR~L~r~Ie~~i~~  283 (315)
T d1qvra3         235 LSYLRARLAEKRIS--LELTEAAKDFLAERGYD---PVFG-ARPLRRVIQRELET  283 (315)
T ss_dssp             HHHHHHHHHTTTCE--EEECHHHHHHHHHHHCB---TTTB-TSTHHHHHHHHTHH
T ss_pred             HHHHHHHHHhcccc--ccccHHHHHHHHHhCCC---CCCC-cchHHHHHHHHHHH
Confidence            88887776665544  47888888888766432   2233 78999998886543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.1e-20  Score=172.71  Aligned_cols=219  Identities=17%  Similarity=0.253  Sum_probs=158.2

Q ss_pred             HHHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316          161 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  239 (445)
Q Consensus       161 ~~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~  239 (445)
                      +.++...|++ ++||+.+++.|...+.       +...++.....+...+||.||||||||.+|+.||+.++.       
T Consensus        13 l~~l~~~L~~~viGQ~~a~~~v~~~v~-------~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~-------   78 (315)
T d1r6bx3          13 LKNLGDRLKMLVFGQDKAIEALTEAIK-------MARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------   78 (315)
T ss_dssp             HHHHHHHHTTTSCSCHHHHHHHHHHHH-------HHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHhCCeecChHHHHHHHHHHHH-------HHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC-------
Confidence            3445566655 9999999999887543       223333333334447999999999999999999999876       


Q ss_pred             CeEEeecccccc-----cccCCc--------hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC
Q 013316          240 RVTEVQRTDLVG-----EFVGHT--------GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG  306 (445)
Q Consensus       240 ~~~~~~~~~l~~-----~~~g~~--------~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~  306 (445)
                      +|+.++++.+..     .++|..        +..+...+.....+|+++||||+.++           ++++.|++.+++
T Consensus        79 ~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~-----------~V~~~lLqild~  147 (315)
T d1r6bx3          79 ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDN  147 (315)
T ss_dssp             EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHH
T ss_pred             CeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhCccchhhhcccccccc-----------hHhhhhHHhhcc
Confidence            899999988643     234431        13355667778889999999999987           889999999975


Q ss_pred             Cc-------------EEEEEecCchhHH-------------------HH-HhhCcccccccccceeCCCCCHHHHHHHHH
Q 013316          307 GK-------------VVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILH  353 (445)
Q Consensus       307 ~~-------------~~~i~a~~~~~~~-------------------~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~  353 (445)
                      +.             .++|++++-....                   .+ -...|.|..|++.++.|.+++.+++..|+.
T Consensus       148 G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~  227 (315)
T d1r6bx3         148 GTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD  227 (315)
T ss_dssp             SEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH
T ss_pred             ceecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHH
Confidence            33             3566655421100                   00 012589999999999999999999999999


Q ss_pred             HHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316          354 IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  410 (445)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~  410 (445)
                      .++.+...++...++.  ..++++++.+++...+.   +..| +|.+++++++-+..
T Consensus       228 ~~l~~~~~~l~~~~i~--l~~~~~a~~~l~~~~yd---~~~G-aR~L~r~Ie~~i~~  278 (315)
T d1r6bx3         228 KFIVELQVQLDQKGVS--LEVSQEARNWLAEKGYD---RAMG-ARPMARVIQDNLKK  278 (315)
T ss_dssp             HHHHHHHHHHHHTTEE--EEECHHHHHHHHHHHCB---TTTB-TTTHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHhcCcc--hhhHHHHHHHHHHhCCC---CCCC-hhhHHHHHHHHHHH
Confidence            9998887777666554  47788898877766542   2234 78999998766544

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.1e-19  Score=162.86  Aligned_cols=203  Identities=17%  Similarity=0.193  Sum_probs=142.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------  239 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~-------  239 (445)
                      .|++++|++++++.|..++..               ...+..+||+||||||||++|+.+++.+.........       
T Consensus        10 ~~~dlig~~~~~~~L~~~i~~---------------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~   74 (239)
T d1njfa_          10 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN   74 (239)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHT---------------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred             CHHHccChHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchH
Confidence            577899999999999887652               2345569999999999999999999998754322211       


Q ss_pred             ----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHh
Q 013316          240 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  302 (445)
Q Consensus       240 ----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~  302 (445)
                                .+++++.++..      .-..++.+++..       ...|+||||+|.+..           ..++.|++
T Consensus        75 ~~~i~~~~~~~~~~~~~~~~~------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~-----------~~q~~Llk  137 (239)
T d1njfa_          75 CREIEQGRFVDLIEIDAASRT------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK  137 (239)
T ss_dssp             HHHHHHTCCTTEEEEETTCSS------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHH
T ss_pred             HHHHHcCCCCeEEEecchhcC------CHHHHHHHHHHHHhccccCCCEEEEEECcccCCH-----------HHHHHHHH
Confidence                      13333332211      123455666554       225999999999976           77889999


Q ss_pred             hccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316          303 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  380 (445)
Q Consensus       303 ~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~  380 (445)
                      .|+.  ...++|++++....     ..+++++|| ..+.|++|+.+++.+++...+....           ..++++++.
T Consensus       138 ~lE~~~~~~~~il~tn~~~~-----i~~~i~SRc-~~i~~~~~~~~~i~~~l~~i~~~e~-----------~~~~~~~l~  200 (239)
T d1njfa_         138 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ  200 (239)
T ss_dssp             HHHSCCTTEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHH
T ss_pred             HHhcCCCCeEEEEEcCCccc-----cChhHhhhh-cccccccCcHHHhhhHHHHHHhhhc-----------cCCCHHHHH
Confidence            9986  55677777655332     268899999 8999999999999999998887642           245666766


Q ss_pred             HHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          381 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      .+ ...+      .||.|.+.++++.+...             +...|+.+++.++++
T Consensus       201 ~i-~~~s------~Gd~R~ain~l~~~~~~-------------~~~~I~~~~v~~~lg  238 (239)
T d1njfa_         201 LL-ARAA------EGSLRDALSLTDQAIAS-------------GDGQVSTQAVSAMLG  238 (239)
T ss_dssp             HH-HHHT------TTCHHHHHHHHHHHHHH-------------TTTSBCHHHHHHHHT
T ss_pred             HH-HHHc------CCCHHHHHHHHHHHHHh-------------CCCCcCHHHHHHHhC
Confidence            44 4555      45666667777766321             112589999988763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3.5e-20  Score=165.13  Aligned_cols=207  Identities=19%  Similarity=0.221  Sum_probs=135.1

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++|++++++.|+.++..                +..+++||+||||||||++|+++++++.....  ...+.+.+.
T Consensus        12 ~~~divg~~~~~~~L~~~i~~----------------~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~--~~~~~e~~~   73 (227)
T d1sxjc2          12 TLDEVYGQNEVITTVRKFVDE----------------GKLPHLLFYGPPGTGKTSTIVALAREIYGKNY--SNMVLELNA   73 (227)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHT----------------TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH--HHHEEEECT
T ss_pred             CHHHccCcHHHHHHHHHHHHc----------------CCCCeEEEECCCCCChhHHHHHHHHHhhcCCC--cceeEEecc
Confidence            467899999999999987642                34457999999999999999999999864211  113455565


Q ss_pred             ccccccccCCchhHHHHHHHHc------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCch
Q 013316          247 TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSE  318 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~~~~a------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~  318 (445)
                      ++..+....   ......+...      ...+++|||+|.+..           ..++.|+..++.  ...+++++++..
T Consensus        74 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~  139 (227)
T d1sxjc2          74 SDDRGIDVV---RNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYTKNTRFCVLANYA  139 (227)
T ss_dssp             TSCCSHHHH---HTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             cccCCeeee---ecchhhccccccccCCCeEEEEEeccccchh-----------hHHHHHHHHhhhcccceeeccccCcH
Confidence            544322110   0001111111      235999999999876           567778888774  345555554433


Q ss_pred             hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316          319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  398 (445)
Q Consensus       319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r  398 (445)
                      ..     ..+++++|| ..+.|++|+.+++..++...+.+..           -.++++++..+ ...+.||+      |
T Consensus       140 ~~-----i~~~i~sr~-~~i~~~~~~~~~i~~~l~~I~~~e~-----------i~i~~~~l~~i-~~~s~Gd~------R  195 (227)
T d1sxjc2         140 HK-----LTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEKAL-IELSNGDM------R  195 (227)
T ss_dssp             GG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHHHH-HHHHTTCH------H
T ss_pred             HH-----hHHHHHHHH-hhhcccccccccccccccccccccc-----------ccCCHHHHHHH-HHHcCCcH------H
Confidence            22     378899998 8899999999999999999887642           24566676644 45554444      4


Q ss_pred             hhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316          399 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  438 (445)
Q Consensus       399 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~  438 (445)
                      .+.+.++.+         .......+...||.+++.++++
T Consensus       196 ~ain~Lq~~---------~~~~~~~~~~~It~~~v~e~~g  226 (227)
T d1sxjc2         196 RVLNVLQSC---------KATLDNPDEDEISDDVIYECCG  226 (227)
T ss_dssp             HHHHHTTTT---------TTTTCSSSCCCBCHHHHHHHTT
T ss_pred             HHHHHHHHH---------HHhcCCCCCCeeCHHHHHHHhC
Confidence            444455443         1122233445799999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.1e-20  Score=155.37  Aligned_cols=129  Identities=19%  Similarity=0.274  Sum_probs=81.0

Q ss_pred             ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316            4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN   82 (445)
Q Consensus         4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d   82 (445)
                      +++++..+ .|.||||+|+ .|+.+++++|+. .+.+++..+. .|.+|+++++..++.+++++++++    |++++.+|
T Consensus        26 ~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~-~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~----~~~~n~~~   98 (156)
T d1bd8a_          26 LVHPDALNRFGKTALQVMM-FGSTAIALELLK-QGASPNVQDT-SGTSPVHDAARTGFLDTLKVLVEH----GADVNVPD   98 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCC
T ss_pred             CCCCCccCCCCCccccccc-cccccccccccc-cccccccccc-cccccccccccccccccccccccc----cccccccc
Confidence            45555544 4666666654 355666665554 3455666554 566666666666666666666663    55666666


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH  141 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~  141 (445)
                      .+|.||||+|+..|+.+++++|+ .|++++.+|.+|+||| ++|...++.+++++|++|
T Consensus        99 ~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL-~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          99 GTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPL-ELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHH-HHHHHSCCHHHHHHHHTT
T ss_pred             CCCCeeecccccccccccccccc-ccccccccCCCCCCHH-HHHHHcCCHHHHHHHHhh
Confidence            66667777766666666666655 4666666666667776 556666666666666654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5.1e-20  Score=153.04  Aligned_cols=122  Identities=25%  Similarity=0.300  Sum_probs=106.2

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCcCCC------CCCCCChHHHHHHhC---CcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316           16 TIHGCAQSGDLLAFQRLLRENPSLLNER------NPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGE   86 (445)
Q Consensus        16 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~------~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~g~~v~~~d~~g~   86 (445)
                      .|+.|+..+++..+..++.. +.+++..      +. .|+||||+|+..   ++.+++++|+++    |+++|.+|..|+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~----gadin~~d~~g~   82 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQN----SGNLDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHH----CSCTTCCCTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCC-CCCchHHHHHHhcCCCCHHHHHHHHHc----CCChhhhhhhhc
Confidence            46688899999999888764 5554433      33 699999999964   678999999995    889999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|++.++.
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPL-DIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccCccccccCCCCCCHH-HHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999 778888999999999876643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.81  E-value=1.8e-19  Score=169.99  Aligned_cols=255  Identities=16%  Similarity=0.223  Sum_probs=154.3

Q ss_pred             HHHHHHh-hhcchHHHHHHHHHHH----HhhhHHHHHH----------cCCCCCCCCCCeeEeecCCCCchhHHHHHHHH
Q 013316          164 LENELSN-IVGLHELKIQLRKWAK----GMLLDERRKA----------LGLKVGARRPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       164 ~~~~~~~-l~g~~~~~~~l~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      +...|++ ++||+++++.+...+.    ....+.....          .+......++.++||.||+|||||.+||+||+
T Consensus        11 i~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          11 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHh
Confidence            3445554 9999999988875431    1111111111          01111235788999999999999999999999


Q ss_pred             HHHHcCCCCCCCeEEeeccccccc-ccCC-chhHHHHHH-------HHccCcEEEEcCccccccCCCCCC---chhHHHH
Q 013316          229 LLYMVGILPTDRVTEVQRTDLVGE-FVGH-TGPKTRRRI-------KEAEGGILFVDEAYRLIPMQKADD---KDYGIEA  296 (445)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~l~~~-~~g~-~~~~~~~~~-------~~a~~~il~lDEid~l~~~~~~~~---~~~~~~~  296 (445)
                      .+..       +|+.++++.+... |+|+ .+..+++++       ..++++|+++||+|++.+......   ......+
T Consensus        91 ~~~~-------~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V  163 (364)
T d1um8a_          91 HLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGV  163 (364)
T ss_dssp             HTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHH
T ss_pred             hccc-------ceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHH
Confidence            8655       9999999987543 7776 344556654       344679999999999987543211   1234478


Q ss_pred             HHHHHhhccCCc---------------EEEEEecC--------chhHHH-------------------------------
Q 013316          297 LEEIMSVMDGGK---------------VVVIFAGY--------SEPMKR-------------------------------  322 (445)
Q Consensus       297 ~~~ll~~~~~~~---------------~~~i~a~~--------~~~~~~-------------------------------  322 (445)
                      ++.||+.++++.               .++|.+++        ......                               
T Consensus       164 ~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (364)
T d1um8a_         164 QQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQ  243 (364)
T ss_dssp             HHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCC
T ss_pred             HHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhcccc
Confidence            899999998522               12222221        111110                               


Q ss_pred             ---HH--hhCcccccccccceeCCCCCHHHHHHHHHH----HHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316          323 ---VI--ASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  393 (445)
Q Consensus       323 ---~~--~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  393 (445)
                         .+  ...|+|..|||.++.|.+++.+++.+|+..    .+++....+..+++.+  .++++++.++....+.   ..
T Consensus       244 ~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L--~~td~a~~~la~~g~d---~~  318 (364)
T d1um8a_         244 THDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDL--IFEEEAIKEIAQLALE---RK  318 (364)
T ss_dssp             HHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE--EECHHHHHHHHHHHHH---TT
T ss_pred             HHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EECHHHHHHHHHhccC---CC
Confidence               00  124889999999999999999999999974    4444444444455555  6888999988776553   33


Q ss_pred             ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHH
Q 013316          394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLE  434 (445)
Q Consensus       394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  434 (445)
                      .| +|-|+.++++.........-.   .......|+.+.|.
T Consensus       319 ~G-AR~L~riie~~l~~~~f~~p~---~~~~~v~I~~~~V~  355 (364)
T d1um8a_         319 TG-ARGLRAIIEDFCLDIMFDLPK---LKGSEVRITKDCVL  355 (364)
T ss_dssp             CT-GGGHHHHHHHHHHHHHHTGGG---GTTSEEEECHHHHT
T ss_pred             CC-chHHHHHHHHHHHHHhccCCC---CCCCEEEECHHHhC
Confidence            44 899999999886654322111   12234456665543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.9e-20  Score=162.24  Aligned_cols=143  Identities=25%  Similarity=0.324  Sum_probs=120.5

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHh---hCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc--------
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA--------   80 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~--------   80 (445)
                      .|.||||+||..|+.++++.|+.   ..+.++|..|. .|+||||+|+..|+.+++++|++++.    +++.        
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~ga----~~~~~~~~~~~~   76 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGA----SPMALDRHGQTA   76 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCC-CCCccceehhcccccccccccccccc----cccccccccccc
Confidence            59999999999999999998875   57899999997 79999999999999999999998743    1111        


Q ss_pred             ---------------------------------------------------------------ccCCCCcHHHHHHHcCC
Q 013316           81 ---------------------------------------------------------------QNMYGETPLHMAAKNGC   97 (445)
Q Consensus        81 ---------------------------------------------------------------~d~~g~tpLh~A~~~g~   97 (445)
                                                                                     .+..+.+|||.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence                                                                           12247789999999999


Q ss_pred             HHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHh
Q 013316           98 NEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAK  160 (445)
Q Consensus        98 ~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~  160 (445)
                      ..+++.+++.|.+++.+|..|.||| ++|+..++.+++++|+++|++++.++..+.++...+.
T Consensus       157 ~~~~~~~~~~~~~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQMYSGSSAL-HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             hhhhhhhhhhccccccccccCcchH-HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            9999999999999999999999999 7788888999999999999888877766666665543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.3e-20  Score=168.03  Aligned_cols=144  Identities=25%  Similarity=0.265  Sum_probs=96.3

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC-------------------
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG-------------------   72 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~-------------------   72 (445)
                      .|.||||+||..|+.++++.|+. .|++++..+. .|.||||+|+..++.+++++|++...                   
T Consensus        44 ~g~TpL~~A~~~g~~~iv~~Ll~-~ga~i~~~d~-~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  121 (255)
T d1oy3d_          44 LGQTALHLAAILGEASTVEKLYA-AGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP  121 (255)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCT-TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred             CCCCccchHHhhccccccccccc-cccccccccc-ccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcc
Confidence            57788888888888888876664 4677777775 67777777777777777777654321                   


Q ss_pred             ------------------------CCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc-cccCCCChhhhhhc
Q 013316           73 ------------------------NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANEGKTPLDHLSN  127 (445)
Q Consensus        73 ------------------------~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~-~~~~g~tpl~~~a~  127 (445)
                                              ..+.+++.+|..|.||||+|+..++.+++++|+++|++++. .+..|.||| |+|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL-~~A~  200 (255)
T d1oy3d_         122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL-HLAV  200 (255)
T ss_dssp             ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHH
T ss_pred             cchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccc-cccc
Confidence                                    12556666777777777777777777777777777776654 345677777 5566


Q ss_pred             CCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316          128 GPGSAKLRELLLWHSEEQRKRRALEACSETK  158 (445)
Q Consensus       128 ~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~  158 (445)
                      ..++.+++++|+++++++..++..+.++...
T Consensus       201 ~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~  231 (255)
T d1oy3d_         201 EAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (255)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            6666777777777766666555544444433

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.4e-20  Score=159.45  Aligned_cols=166  Identities=21%  Similarity=0.292  Sum_probs=130.4

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~  243 (445)
                      .++.++|.++..+++.+.+.                .....+++|.||||+|||++++.+|+.+....   .+....+++
T Consensus        20 ~ld~~igRd~Ei~~l~~iL~----------------r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~   83 (195)
T d1jbka_          20 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA   83 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             CCCCCcCcHHHHHHHHHHHh----------------ccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            34568999877777766432                34567999999999999999999999886532   355678999


Q ss_pred             eeccccccc--ccCCchhHHHHHHHHc---c-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          244 VQRTDLVGE--FVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       244 ~~~~~l~~~--~~g~~~~~~~~~~~~a---~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++.+.+++.  |.|+-+..+..++++.   . ..||||||++.+...+++.++   .++-+.|...+..+.+.+|++||+
T Consensus        84 ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~---~d~~~~Lkp~L~rg~l~~IgatT~  160 (195)
T d1jbka_          84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALARGELHCVGATTL  160 (195)
T ss_dssp             ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHHTTSCCEEEEECH
T ss_pred             eeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCc---ccHHHHHHHHHhCCCceEEecCCH
Confidence            999998754  6677788888888664   2 359999999999875543221   134567888889999999999999


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHH
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL  352 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il  352 (445)
                      +.+..+++.||+|.+|| ..|.++.|+.++-..|+
T Consensus       161 eey~~~~e~d~aL~rrF-~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         161 DEYRQYIEKDAALERRF-QKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHHHTTTCHHHHTTE-EEEECCCCCHHHHHTTC
T ss_pred             HHHHHHHHcCHHHHhcC-CEeecCCCCHHHHHHHh
Confidence            99999999999999999 99999999999987765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=3.4e-20  Score=162.67  Aligned_cols=130  Identities=27%  Similarity=0.287  Sum_probs=103.4

Q ss_pred             CCccCccCC--CCCchHhHHHHHcCCHHHHHHHHhhCCCCcC--------------------------------------
Q 013316            2 QKNQDRRSR--SAKPATIHGCAQSGDLLAFQRLLRENPSLLN--------------------------------------   41 (445)
Q Consensus         2 ~~~~~~~~~--~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~--------------------------------------   41 (445)
                      +.|++.+.+  ..|.||||+||..|+.++++.|+.. +.++|                                      
T Consensus        10 ~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (209)
T d1ot8a_          10 AQGAELNATMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMH   88 (209)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT
T ss_pred             HCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            467777753  4799999999999999999988763 33333                                      


Q ss_pred             -----------------------------CCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316           42 -----------------------------ERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA   92 (445)
Q Consensus        42 -----------------------------~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A   92 (445)
                                                   ..+. .|+||||+++..+..++++.++..    +.+++.+|..|.||||+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~----~~~~~~~d~~g~TpL~~A  163 (209)
T d1ot8a_          89 DGTTPLILAARLAIEGMVEDLITADADINAADN-SGKTALHWAAAVNNTEAVNILLMH----HANRDAQDDKDETPLFLA  163 (209)
T ss_dssp             TCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhcccccccCC-CCCCcchhhcccCcceeeeeeccc----cccccccccccccccchh
Confidence                                         3333 577888888888888888888875    667788888888888888


Q ss_pred             HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316           93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL  138 (445)
Q Consensus        93 ~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l  138 (445)
                      +..|+.+++++|+++|++++.+|..|+||| ++|+..++.+++++|
T Consensus       164 ~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl-~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         164 AREGSYEASKALLDNFANREITDHMDRLPR-DVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCCHHHHhhc
Confidence            888888888888888888888888888888 777777888888875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2e-19  Score=149.66  Aligned_cols=121  Identities=23%  Similarity=0.332  Sum_probs=92.7

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC---------------------
Q 013316           14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG---------------------   72 (445)
Q Consensus        14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~---------------------   72 (445)
                      .||||.||+.|+.++++.||.. +++++ .+. .|+||||+|+..++.+++..++..+.                     
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~-~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-ccc-CCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            4788888888888888877764 55555 343 58888888888888877777766532                     


Q ss_pred             --------CCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316           73 --------NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL  138 (445)
Q Consensus        73 --------~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l  138 (445)
                              ..+++.+.+|.+|.||||+|+..|+.+++++|+++|++++.+|.+|.||| ++|+..++.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl-~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF-DISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHH-HHHHHcCCHHHHHhC
Confidence                    13566677788888888888888888888888888888888888888888 777778888888776

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=2.7e-19  Score=159.69  Aligned_cols=186  Identities=26%  Similarity=0.307  Sum_probs=128.6

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++|++.+++.|+.++..                +..+++||+||||||||++|+++|+++....  ....++++++
T Consensus        22 ~~~diig~~~~~~~l~~~i~~----------------~~~~~lll~Gp~G~GKTtla~~iak~l~~~~--~~~~~~e~n~   83 (231)
T d1iqpa2          22 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGEN--WRHNFLELNA   83 (231)
T ss_dssp             STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGG--HHHHEEEEET
T ss_pred             CHHHccCcHHHHHHHHHHHHc----------------CCCCeEEEECCCCCcHHHHHHHHHHHHHhcc--cCCCeeEEec
Confidence            467899999999999988652                2456899999999999999999999875311  1115778887


Q ss_pred             ccccccccCCchhHHHHH-----HHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316          247 TDLVGEFVGHTGPKTRRR-----IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  319 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~-----~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~  319 (445)
                      ++..+....  .......     +......|+++||+|.+..           ..+..|+..++.  ..+++|++++...
T Consensus        84 s~~~~~~~~--~~~~~~~~~~~~~~~~~~~iilide~d~~~~-----------~~~~~ll~~l~~~~~~~~~i~~~n~~~  150 (231)
T d1iqpa2          84 SDERGINVI--REKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS  150 (231)
T ss_dssp             TCHHHHHTT--HHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             CcccchhHH--HHHHHHHHhhhhccCCCceEEeehhhhhcch-----------hHHHHHhhhcccCCcceEEEeccCChh
Confidence            765332111  0111111     1122458999999998886           566777777764  4566777665443


Q ss_pred             HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchh
Q 013316          320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  399 (445)
Q Consensus       320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~  399 (445)
                      .     ..+++++|| ..+.|++|+..++..+++..+.+..           ..++.+++..++ ..+.      |+.|.
T Consensus       151 ~-----i~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~e~-----------i~i~~~~l~~I~-~~~~------gdiR~  206 (231)
T d1iqpa2         151 K-----IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAIL-YIAE------GDMRR  206 (231)
T ss_dssp             G-----SCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHH-HHHT------TCHHH
T ss_pred             h-----chHhHhCcc-ccccccccchhhHHHHHHHHHHHhC-----------CCCCHHHHHHHH-HHcC------CCHHH
Confidence            2     278899999 7899999999999999999888642           235666776544 4453      45555


Q ss_pred             hHHHHHHH
Q 013316          400 VDPMLVNA  407 (445)
Q Consensus       400 l~~~~~~~  407 (445)
                      +.+.++.+
T Consensus       207 ai~~Lq~~  214 (231)
T d1iqpa2         207 AINILQAA  214 (231)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666655

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.6e-19  Score=160.63  Aligned_cols=142  Identities=25%  Similarity=0.339  Sum_probs=103.8

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC---------------------
Q 013316           15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN---------------------   73 (445)
Q Consensus        15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~---------------------   73 (445)
                      +|||+||..|+.+.++.||...+..++.++. +|+||||+|+..|+.+++++|++.+.+                     
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCC-CCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5777777777777777777666666666665 577777777777777777777665321                     


Q ss_pred             ----------------------------------------------CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 013316           74 ----------------------------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH  107 (445)
Q Consensus        74 ----------------------------------------------~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~  107 (445)
                                                                    .+.+.+.+|..|+||||+|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence                                                          1233334556688999999999999999999987


Q ss_pred             C-CCCcccccCCCChhhhhhcCCCChHHHHHHHh-hhhhHHhhhhhhhhhhhH
Q 013316          108 G-AFIEAKANEGKTPLDHLSNGPGSAKLRELLLW-HSEEQRKRRALEACSETK  158 (445)
Q Consensus       108 g-a~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~-~~~~~~~~~~~~~~~~~~  158 (445)
                      | .+++.+|.+|+||| |+|+..++.+++++|++ .|+++..++..+.++...
T Consensus       161 ~~~~in~~d~~g~TpL-h~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~  212 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPL-FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV  212 (229)
T ss_dssp             TCCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGG
T ss_pred             ccccccccccccCCch-hhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            6 67889999999999 77788889999999886 577877776665555543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.7e-19  Score=148.45  Aligned_cols=135  Identities=27%  Similarity=0.366  Sum_probs=96.4

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 013316           15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK   94 (445)
Q Consensus        15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~   94 (445)
                      ++||+||..|+.++|+.|++ .|+++|..|. .|+||||+|+ .|+.+++++|++.    |++++.++..|.+|++.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~-~g~d~n~~d~-~g~TpL~~A~-~~~~ei~~~Ll~~----~a~~~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ-NNVNVNAQNG-FGRTALQVMK-LGNPEIARRLLLR----GANPDLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT-SCCCTTCCCT-TSCCHHHHCC-SSCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCcCccCC-cccccccccc-ccccccccccccc----ccccccccccCccccccccc
Confidence            67888888888888877665 5777777776 6888888765 5778888888874    67777777777777777777


Q ss_pred             cCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhh-hHHhhhhhhhhhhh
Q 013316           95 NGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSE-EQRKRRALEACSET  157 (445)
Q Consensus        95 ~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~-~~~~~~~~~~~~~~  157 (445)
                      .++.+++.+|+..+.+++..+..|.+|+ +.|...+..+++++|+.+++ +...++..+.++..
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l-~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          76 AGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  138 (156)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccccccccccccccccCCCCCCHHH
Confidence            7777777777777777777777777777 66666677777777776665 34444444444443

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.6e-18  Score=152.43  Aligned_cols=198  Identities=21%  Similarity=0.207  Sum_probs=132.1

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+++++|++++++.|.+++.                .+..+++||+||||||||++|+.+++++.....  ...++++++
T Consensus        13 ~~~d~ig~~~~~~~L~~~~~----------------~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~--~~~~~~~n~   74 (224)
T d1sxjb2          13 VLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELNA   74 (224)
T ss_dssp             SGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEECT
T ss_pred             CHHHhcCCHHHHHHHHHHHH----------------cCCCCeEEEECCCCCCchhhHHHHHHHHhcccc--ccccccccc
Confidence            46789999999999998764                234568999999999999999999999874211  113667777


Q ss_pred             ccccccccCCchhHHHHH---HHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEe
Q 013316          247 TDLVGEFVGHTGPKTRRR---IKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA  314 (445)
Q Consensus       247 ~~l~~~~~g~~~~~~~~~---~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a  314 (445)
                      ++..+.      ..+...   +...       ...++++||+|.+..           ..++.|+..++.  ....++++
T Consensus        75 ~~~~~~------~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~-----------~~~~~ll~~~e~~~~~~~~i~~  137 (224)
T d1sxjb2          75 SDDRGI------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELYSNSTRFAFA  137 (224)
T ss_dssp             TSCCSH------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHTTTTEEEEEE
T ss_pred             cccCCc------eehhhHHHHHHHhhccCCCcceEEEEEecccccch-----------hHHHHHhhhccccccceeeeec
Confidence            654321      111111   1111       346999999999987           566777777764  33444444


Q ss_pred             cCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316          315 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  394 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  394 (445)
                      ++....     ..+++++|| ..|+|++|+.+++..++...+++..           ..++++++. .+...+.      
T Consensus       138 ~~~~~~-----i~~~l~sr~-~~i~~~~~~~~~i~~~l~~i~~~e~-----------~~i~~~~l~-~I~~~s~------  193 (224)
T d1sxjb2         138 CNQSNK-----IIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLE-AIIFTAE------  193 (224)
T ss_dssp             ESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHH-HHHHHHT------
T ss_pred             cCchhh-----hhhHHHHHH-HHhhhcccchhhhHHHHHHHHHhcc-----------cCCCHHHHH-HHHHHcC------
Confidence            433221     268899999 7899999999999999999888642           245666766 4445554      


Q ss_pred             cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                      |+.|.+-+.++.+..              ....|+.++|.+.+
T Consensus       194 Gd~R~ai~~Lq~~~~--------------~~~~i~~~~i~~~~  222 (224)
T d1sxjb2         194 GDMRQAINNLQSTVA--------------GHGLVNADNVFKIV  222 (224)
T ss_dssp             TCHHHHHHHHHHHHH--------------HHSSBCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH--------------cCCCcCHHHHHHHh
Confidence            455555566665421              11246777776654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.78  E-value=2.7e-19  Score=163.73  Aligned_cols=136  Identities=16%  Similarity=0.181  Sum_probs=102.5

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC--------
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG--------   72 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~--------   72 (445)
                      ++|++++..+ .|.||||+||..|+.++++.||. .|++++.++. .|.||||+|+..++.+++.++.....        
T Consensus        62 ~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~n~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          62 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             HcCCCccccCCCCCeeeccccccccccccccccc-cccccccccc-cccccccchhhhcchhhhhhhhhccccccccccc
Confidence            4688999876 69999999999999999998876 5888888876 67788888877777766666544310        


Q ss_pred             ---------------------------------------------------------------------CCCcccccccC
Q 013316           73 ---------------------------------------------------------------------NDKVELEAQNM   83 (445)
Q Consensus        73 ---------------------------------------------------------------------~~g~~v~~~d~   83 (445)
                                                                                           ..+.+++.+|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~  219 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE  219 (277)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCC
Confidence                                                                                 01334455666


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316           84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW  140 (445)
Q Consensus        84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~  140 (445)
                      .|.||||+|+..|+.+++++|+++|++++.+|.+|+||| ++|+..++.+++++|++
T Consensus       220 ~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L-~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTAR-QLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHH-HHHHHTTCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHH
Confidence            677788888877888888877777888777777788887 66777777777777754

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.1e-19  Score=162.53  Aligned_cols=90  Identities=23%  Similarity=0.220  Sum_probs=54.2

Q ss_pred             CCCCchHhHHHHHcCCHHHHHHHHhhCCCC---cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316           10 RSAKPATIHGCAQSGDLLAFQRLLRENPSL---LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE   86 (445)
Q Consensus        10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~   86 (445)
                      ...|.||||+||..|+.++++.|+.. +++   ++..+. .|.||||+|+..|+.+++++|++.    |++++.+|..|.
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~~~-~g~TpL~~A~~~g~~~iv~~Ll~~----ga~i~~~d~~g~   79 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAA----GAGVLVAERGGH   79 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCSSCCCTTSC
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCcCC-CCCCccchHHhhcccccccccccc----cccccccccccc
Confidence            34566666666666666666655543 222   444544 466666666666666666666663    566666666666


Q ss_pred             cHHHHHHHcCCHHHHHHHH
Q 013316           87 TPLHMAAKNGCNEAAKLLL  105 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll  105 (445)
                      ||||+|+..++.+++++|+
T Consensus        80 tpL~~A~~~~~~~~~~~Ll   98 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLL   98 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHS
T ss_pred             hhhhhhhccCchHHHHHHH
Confidence            6666666666666665554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3e-19  Score=149.20  Aligned_cols=138  Identities=25%  Similarity=0.380  Sum_probs=121.7

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 013316           14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA   93 (445)
Q Consensus        14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~   93 (445)
                      ...||.||..|+.++|++||...+.++|..|. .|+||||+|+ .|+.+++++|++.    +.+++..+..|.+|++.++
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~-~g~t~L~~A~-~~~~~~v~~Ll~~----~~~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMM-FGSTAIALELLKQ----GASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHHSC-TTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCC-CCCccccccc-ccccccccccccc----ccccccccccccccccccc
Confidence            45799999999999999999988999999997 7999999986 5789999999985    7889999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           94 KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        94 ~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      ..++.++++++++.|++++.+|..|.||| |+|+..++.+++++|+ .+++...++..+.++...+
T Consensus        77 ~~~~~~~~~~~l~~~~~~n~~~~~~~t~L-~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A  140 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELA  140 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccccccccCCCCeee-cccccccccccccccc-ccccccccCCCCCCHHHHH
Confidence            99999999999999999999999999999 7788889999999887 5666666665555555443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.3e-18  Score=154.12  Aligned_cols=211  Identities=18%  Similarity=0.204  Sum_probs=132.2

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|++++|++++++.|+.++.                ....++++|+||||||||++|+++++++..... .......++.
T Consensus        10 ~~~diig~~~~~~~l~~~i~----------------~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~-~~~~~~~~~~   72 (237)
T d1sxjd2          10 NLDEVTAQDHAVTVLKKTLK----------------SANLPHMLFYGPPGTGKTSTILALTKELYGPDL-MKSRILELNA   72 (237)
T ss_dssp             STTTCCSCCTTHHHHHHHTT----------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH-HTTSEEEECS
T ss_pred             CHHHccCcHHHHHHHHHHHH----------------cCCCCeEEEECCCCCChHHHHHHHHHHHcCCcc-cccchhheec
Confidence            46789999999998887643                234567999999999999999999998743211 1114455555


Q ss_pred             cccccc-ccCCchhHH------------HHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEE
Q 013316          247 TDLVGE-FVGHTGPKT------------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV  311 (445)
Q Consensus       247 ~~l~~~-~~g~~~~~~------------~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~  311 (445)
                      +...+. .+.......            ..........|+||||+|.+..           ...+.++..++.  ....+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~-----------~~~~~l~~~~~~~~~~~~~  141 (237)
T d1sxjd2          73 SDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETYSGVTRF  141 (237)
T ss_dssp             SSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTTTEEE
T ss_pred             cccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCH-----------HHHHHHhhccccccccccc
Confidence            443222 111111110            0011111335999999999986           445555555543  33444


Q ss_pred             EEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316          312 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  391 (445)
Q Consensus       312 i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  391 (445)
                      |.+++...-     ..+++++|| ..+.|++|+.+++..+++..+.+..           ..++++++..+. ..+    
T Consensus       142 i~~~~~~~~-----~~~~l~sr~-~~i~f~~~~~~~~~~~L~~i~~~e~-----------i~i~~~~l~~ia-~~s----  199 (237)
T d1sxjd2         142 CLICNYVTR-----IIDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERIL-DIS----  199 (237)
T ss_dssp             EEEESCGGG-----SCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHH-HHT----
T ss_pred             ccccccccc-----ccccccchh-hhhccccccccccchhhhhhhhhhc-----------CcCCHHHHHHHH-HHc----
Confidence            554443221     267789999 8899999999999999998887641           246677877554 444    


Q ss_pred             hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316          392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  437 (445)
Q Consensus       392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~  437 (445)
                        .|+.|.+.+.++++........   .     ...||.+++.+++
T Consensus       200 --~gd~R~ai~~L~~~~~~~~~~~---~-----~~~It~~~i~e~~  235 (237)
T d1sxjd2         200 --AGDLRRGITLLQSASKGAQYLG---D-----GKNITSTQVEELA  235 (237)
T ss_dssp             --SSCHHHHHHHHHHTHHHHHHHC---S-----CCCCCHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHhchhcC---C-----CCccCHHHHHHhh
Confidence              3556666677776643322211   1     1258999988765

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=8e-18  Score=159.31  Aligned_cols=216  Identities=19%  Similarity=0.221  Sum_probs=138.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH---cCCCCCCCeEE
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM---VGILPTDRVTE  243 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~---~~~~~~~~~~~  243 (445)
                      .++.++|.+.-.+++.+.+.                .....+++|.||||+|||++++.+|+.+..   +..+....++.
T Consensus        20 ~ld~~~gr~~ei~~~~~~L~----------------r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~   83 (387)
T d1qvra2          20 KLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS   83 (387)
T ss_dssp             CSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred             CCCCCcCcHHHHHHHHHHHh----------------cCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            35568999977777766432                345678899999999999999999998754   23355667999


Q ss_pred             eecccccc--cccCCchhHHHHHHHHc---c-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316          244 VQRTDLVG--EFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  317 (445)
Q Consensus       244 ~~~~~l~~--~~~g~~~~~~~~~~~~a---~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~  317 (445)
                      ++.+.++.  +|.|+-+..+..++.+.   . +.||||||+|.+...+++.   .+.++-+.|...+..+.+.+|++||+
T Consensus        84 ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~---g~~d~a~~Lkp~L~rg~~~~I~~tT~  160 (387)
T d1qvra2          84 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALARGELRLIGATTL  160 (387)
T ss_dssp             ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEECH
T ss_pred             eeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCC---CcccHHHHHHHHHhCCCcceeeecCH
Confidence            99999885  47888888888888665   3 3589999999998755422   12356678888999999999999999


Q ss_pred             hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316          318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~  397 (445)
                      ..+..+ ..||+|.+|| ..|.++.|+.++-..|++.....+...   +++    .++++++.... ..+.-++..-.-.
T Consensus       161 ~ey~~~-e~d~al~rrF-~~v~v~ep~~~~~~~il~~~~~~~e~~---h~v----~~~~~ai~~~v-~ls~ryi~~r~~P  230 (387)
T d1qvra2         161 DEYREI-EKDPALERRF-QPVYVDEPTVEETISILRGLKEKYEVH---HGV----RISDSAIIAAA-TLSHRYITERRLP  230 (387)
T ss_dssp             HHHHHH-TTCTTTCSCC-CCEEECCCCHHHHHHHHHHHHHHHHHH---TTC----EECHHHHHHHH-HHHHHHCCSSCTH
T ss_pred             HHHHHh-cccHHHHHhc-ccccCCCCcHHHHHHHHHHHHHHHHhc---cCC----cccHHHHHHHH-HhcccccccccCh
Confidence            999874 7799999999 999999999999999999876665322   223    44555655433 2222222222223


Q ss_pred             hhhHHHHHHHHHhh
Q 013316          398 GLVDPMLVNARENL  411 (445)
Q Consensus       398 r~l~~~~~~~~~~~  411 (445)
                      .....+++.|+...
T Consensus       231 dKAidlld~a~a~~  244 (387)
T d1qvra2         231 DKAIDLIDEAAARL  244 (387)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            34566666664443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=8.3e-19  Score=161.85  Aligned_cols=145  Identities=26%  Similarity=0.244  Sum_probs=114.9

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCC-----------------
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND-----------------   74 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~-----------------   74 (445)
                      .+.|+||+||..|+.++|+.||. .|+++|..|. .|+||||+|+..|+.+++++|++++...                 
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~-~Gadvn~~d~-~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLE-RGADINYANV-DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHH-CCCCCCccCC-CCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            45678888888888888887775 4677887776 6888888888888888888887764210                 


Q ss_pred             ------------Cccc------------------------------------------------------------cccc
Q 013316           75 ------------KVEL------------------------------------------------------------EAQN   82 (445)
Q Consensus        75 ------------g~~v------------------------------------------------------------~~~d   82 (445)
                                  |...                                                            ...+
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence                        1111                                                            1233


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      ..|.||||+|+..|+.+++++|++.|++++.++..|+||| |+|+..++.+++++|+++|++++.++..+.++...+
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL-~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL-HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            4578999999999999999999999999999999999999 788889999999999999999888776666665544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.1e-19  Score=146.34  Aligned_cols=134  Identities=20%  Similarity=0.294  Sum_probs=121.4

Q ss_pred             CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      +++|++++..+ .|.||||+|+ .|+.++++.|+. .+++++..+. .|.+|++.++..++.+++++++++    +.+++
T Consensus        21 l~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~-~~a~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~----~~~~~   93 (156)
T d1ihba_          21 LQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLL-RGANPDLKDR-TGFAVIHDAARAGFLDTLQTLLEF----QADVN   93 (156)
T ss_dssp             TTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTT
T ss_pred             HHCCCCcCccCCcccccccccc-cccccccccccc-cccccccccc-cCcccccccccccccccccccccc----ccccc
Confidence            57899999877 6999999886 789999988775 6788999987 799999999999999999999985    77889


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316           80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS  142 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga-~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~  142 (445)
                      ..+..|.+|+|+|+..++.+++++|+++|+ +++.+|.+|+||| |+|...++.+++++|+++|
T Consensus        94 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL-~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          94 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC-DLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCCHH-HHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999998876 7899999999999 7888889999999998875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=2.1e-18  Score=159.07  Aligned_cols=87  Identities=28%  Similarity=0.361  Sum_probs=76.9

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS  126 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a  126 (445)
                      .|.||||+|+..|+.+++++|++.    |+++|.++..|.||||+|+..|+.+++++|+++|++++.+|.+|+||| ++|
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~----g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL-~~A  272 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQA----RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF-DVA  272 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT-TSC
T ss_pred             CCCChhhHHHHcCChhhhcccccc----eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHH
Confidence            578889999999999999999985    889999999999999999999999999999999999999999999999 666


Q ss_pred             cCCCChHHHHHHHhhh
Q 013316          127 NGPGSAKLRELLLWHS  142 (445)
Q Consensus       127 ~~~~~~~i~~~ll~~~  142 (445)
                      ..    +++.+|....
T Consensus       273 ~e----~~~~~L~~~~  284 (291)
T d1s70b_         273 DE----DILGYLEELQ  284 (291)
T ss_dssp             CS----GGGHHHHHHH
T ss_pred             HH----HHHHHHHHHh
Confidence            53    5777775443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.1e-18  Score=156.09  Aligned_cols=193  Identities=17%  Similarity=0.209  Sum_probs=118.9

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcC-CCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALG-LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      .|++++|++..+++|.+++............. ...+.....++||+||||||||++|+++|++++.       ++..++
T Consensus        12 ~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~-------~~~~~~   84 (253)
T d1sxja2          12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILEQN   84 (253)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEEEC
T ss_pred             CHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-------hhhccc
Confidence            47789999999999999876543322221111 2233445678999999999999999999999876       788888


Q ss_pred             cccccccccCCc---------------hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--Cc
Q 013316          246 RTDLVGEFVGHT---------------GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GK  308 (445)
Q Consensus       246 ~~~l~~~~~g~~---------------~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~  308 (445)
                      .+...+.+....               ..............++++||+|.+....+        .....++.....  ..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~--------~~~~~~~~~~~~~~~~  156 (253)
T d1sxja2          85 ASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTSTP  156 (253)
T ss_dssp             TTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCSSC
T ss_pred             cccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchh--------hhhHHHhhhhcccccc
Confidence            876543321100               00000000112357999999999987543        233344444333  33


Q ss_pred             EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHH
Q 013316          309 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT  388 (445)
Q Consensus       309 ~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (445)
                      +++++++.....      .+.+++|+ ..|+|++|+.+++..+++..+.+.       ++.+    +++++..+. ..++
T Consensus       157 ii~i~~~~~~~~------~~~l~~~~-~~i~f~~~~~~~i~~~l~~i~~~e-------~i~i----~~~~l~~i~-~~s~  217 (253)
T d1sxja2         157 LILICNERNLPK------MRPFDRVC-LDIQFRRPDANSIKSRLMTIAIRE-------KFKL----DPNVIDRLI-QTTR  217 (253)
T ss_dssp             EEEEESCTTSST------TGGGTTTS-EEEECCCCCHHHHHHHHHHHHHHH-------TCCC----CTTHHHHHH-HHTT
T ss_pred             cccccccccccc------ccccccee-eeeeccccchhHHHHHHHHHHHHh-------CCCC----CHHHHHHHH-HhCC
Confidence            444443333222      23455554 999999999999999999988763       2333    444666444 4554


Q ss_pred             Hhhhc
Q 013316          389 EKQRR  393 (445)
Q Consensus       389 ~~~~~  393 (445)
                      ||+|.
T Consensus       218 GDiR~  222 (253)
T d1sxja2         218 GDIRQ  222 (253)
T ss_dssp             TCHHH
T ss_pred             CcHHH
Confidence            44443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.75  E-value=1.8e-17  Score=159.94  Aligned_cols=258  Identities=17%  Similarity=0.222  Sum_probs=169.8

Q ss_pred             HHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCC-CCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316          165 ENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  242 (445)
Q Consensus       165 ~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~  242 (445)
                      ...|++ ++||+.+|+.|.-.+   ...++|....... ..-.+.|||+.||||||||.+||.||+.++.       ||+
T Consensus         9 ~~~Ld~yVvGQ~~AKk~lsvav---~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~V-------PFv   78 (443)
T d1g41a_           9 VSELDQHIIGQADAKRAVAIAL---RNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------PFI   78 (443)
T ss_dssp             HHHHHTTCCSCHHHHHHHHHHH---HHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------CEE
T ss_pred             HHHhcCcccCcHHHHHHHHHHH---HHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCC-------CEE
Confidence            344554 999999999887632   2233333332221 1234679999999999999999999999877       999


Q ss_pred             Eeeccccccc-ccCCchhH-HHHHH-------------------------------------------------------
Q 013316          243 EVQRTDLVGE-FVGHTGPK-TRRRI-------------------------------------------------------  265 (445)
Q Consensus       243 ~~~~~~l~~~-~~g~~~~~-~~~~~-------------------------------------------------------  265 (445)
                      .++|+.+... |+|+.-.. +++++                                                       
T Consensus        79 ~~daT~fTeaGYvG~DVesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~  158 (443)
T d1g41a_          79 KVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAF  158 (443)
T ss_dssp             EEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------------------------------
T ss_pred             EeecceeeecceeecchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhHHH
Confidence            9999987644 55542111 11110                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 013316          266 --------------------------------------------------------------------------------  265 (445)
Q Consensus       266 --------------------------------------------------------------------------------  265 (445)
                                                                                                      
T Consensus       159 ~~~L~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~  238 (443)
T d1g41a_         159 RKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEE  238 (443)
T ss_dssp             ------------------------------------------------------------------CCGGGSCSSCCHHH
T ss_pred             HHHHhcCCccccccccccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhH
Confidence                                                                                            


Q ss_pred             ------HH-ccCcEEEEcCccccccCCCCCCchhHHH-HHHHHHhhccCC------------cEEEEEecCchhHHHHHh
Q 013316          266 ------KE-AEGGILFVDEAYRLIPMQKADDKDYGIE-ALEEIMSVMDGG------------KVVVIFAGYSEPMKRVIA  325 (445)
Q Consensus       266 ------~~-a~~~il~lDEid~l~~~~~~~~~~~~~~-~~~~ll~~~~~~------------~~~~i~a~~~~~~~~~~~  325 (445)
                            .. ..++++|+||+++....+...+.+...+ .+..++..++..            .+.+|+++...... ...
T Consensus       239 i~~~ai~~v~~~~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~-~~g  317 (443)
T d1g41a_         239 LKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR-PSD  317 (443)
T ss_dssp             HHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC-GGG
T ss_pred             HHHHHHHHHhccCccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcc-ccc
Confidence                  00 1236899999999998776655555544 455677776552            34566655443321 112


Q ss_pred             hCcccccccccceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHHH--hhhcccCchh
Q 013316          326 SNEGFCRRVTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE--KQRREMNGGL  399 (445)
Q Consensus       326 ~~~~l~~R~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~n~r~  399 (445)
                      .-|.|..||+..+.+.+++.+++..||.    ..++++...+..+++.+  .++++++..+.+.....  ..+..| +|-
T Consensus       318 liPEliGRlPi~v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L--~ft~~al~~iA~~A~~~n~~~~~~G-AR~  394 (443)
T d1g41a_         318 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNI--AFTTDAVKKIAEAAFRVNEKTENIG-ARR  394 (443)
T ss_dssp             SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE--EECHHHHHHHHHHHHHHHHHSCCCG-GGH
T ss_pred             chhhhccceEEEEEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEE--EEcHHHHHHHHHHHHHhhhhcccCC-chH
Confidence            2599999999999999999999999994    45666665566666665  77888998776655522  234445 899


Q ss_pred             hHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          400 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      |+.++|++........-.   .......|+.+.|.+.++.
T Consensus       395 Lr~i~E~~l~~~~f~~p~---~~~~~v~Id~~~v~~~l~~  431 (443)
T d1g41a_         395 LHTVMERLMDKISFSASD---MNGQTVNIDAAYVADALGE  431 (443)
T ss_dssp             HHHHHHHHHHHHHHHGGG---CTTCEEEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccCCC---CCCCEEEECHHHHHhhhhc
Confidence            999999996655443321   1234467888888777653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.75  E-value=7.3e-18  Score=154.93  Aligned_cols=242  Identities=12%  Similarity=0.041  Sum_probs=144.3

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CCCCCeEEeecc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQRT  247 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~~~~~~~~~~~  247 (445)
                      .+.|.+...+.|.+++......      +. ........++|+||||||||++++++++.+.....  .....+..+++.
T Consensus        17 ~~~~Re~e~~~l~~~l~~~~~~------~~-~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~   89 (287)
T d1w5sa2          17 ELRVRRGEAEALARIYLNRLLS------GA-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF   89 (287)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHT------SS-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHc------CC-CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccc
Confidence            4777777666666644222110      00 00111124677899999999999999999864321  111244455554


Q ss_pred             ccccc----------------ccCCchhHHHHHHHH-----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---
Q 013316          248 DLVGE----------------FVGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---  303 (445)
Q Consensus       248 ~l~~~----------------~~g~~~~~~~~~~~~-----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---  303 (445)
                      .....                ..|.....+.+.+.+     ....++++||+|.+....+..  ......+..+...   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~--~~~~~~l~~l~~~l~~  167 (287)
T d1w5sa2          90 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA--AEDLYTLLRVHEEIPS  167 (287)
T ss_dssp             GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC--HHHHHHHHTHHHHSCC
T ss_pred             cccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccc--hhHHHHHHHHHHhcch
Confidence            42211                123333333333322     234788999999998654321  1111122222222   


Q ss_pred             -ccCCcEEEEEe-cCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHH
Q 013316          304 -MDGGKVVVIFA-GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA  381 (445)
Q Consensus       304 -~~~~~~~~i~a-~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  381 (445)
                       .......+|+. +.......+....+++.+||+..++|++|+.+|+.+|+...++...         ....++++++. 
T Consensus       168 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~---------~~~~~~~~al~-  237 (287)
T d1w5sa2         168 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL---------RDTVWEPRHLE-  237 (287)
T ss_dssp             TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB---------CTTSCCHHHHH-
T ss_pred             hhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhh---------ccCCCCHHHHH-
Confidence             22345555554 4444445555667899999999999999999999999998886531         12346677766 


Q ss_pred             HHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316          382 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  439 (445)
Q Consensus       382 ~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~  439 (445)
                      +++..+.......|+.|.+.++++.|.+.+..         ++...||.+||++|+++
T Consensus       238 ~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~~---------~~~~~It~~~V~~A~~e  286 (287)
T d1w5sa2         238 LISDVYGEDKGGDGSARRAIVALKMACEMAEA---------MGRDSLSEDLVRKAVSE  286 (287)
T ss_dssp             HHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCCHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHhc
Confidence            55555544444567888888888887543221         23347999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.75  E-value=1.1e-19  Score=172.43  Aligned_cols=131  Identities=14%  Similarity=0.042  Sum_probs=110.2

Q ss_pred             CCchHhHHHHHcCCHHHHHHH--HhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc--CCCCc
Q 013316           12 AKPATIHGCAQSGDLLAFQRL--LRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--MYGET   87 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~l--l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d--~~g~t   87 (445)
                      .|.||||+||..|+.++++.+  |...++++|..+. .|+||||+||.+||.++|++|++.    |++++..+  .+|.|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~-~g~taL~~Aa~~G~~~~v~~Ll~~----g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCEL----APTEIMAMIQAENYH  163 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHS----CTTTHHHHHSHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC-CCCCHHHHHHHCCCHHHHHHHHHc----CCCccccccccCCCC
Confidence            688999999999999888764  5678899999987 799999999999999999999995    78887765  46899


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCc---ccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316           88 PLHMAAKNGCNEAAKLLLAHGAFIE---AKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  148 (445)
Q Consensus        88 pLh~A~~~g~~~~~~~Ll~~ga~~~---~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~  148 (445)
                      |||+|+..|+.+++++|++.|++..   ..+.++.||+ ++|+..++.+++++|++.+++....
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l-~~A~~~g~~~iv~~Ll~~ga~~~~~  226 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR-WAAVGRGHHNVINFLLDCPVMLAYA  226 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHH-HHHSTTCCHHHHHHHTTSHHHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchh-hHHhhcCHHHHHHHHHhCCCCcchH
Confidence            9999999999999999999998764   3445667777 8899999999999999999876543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=3.6e-18  Score=158.61  Aligned_cols=120  Identities=19%  Similarity=0.134  Sum_probs=86.8

Q ss_pred             ccCccC--CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc-------HHHHHHhhc-----
Q 013316            4 NQDRRS--RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK-------AEIVKSLLE-----   69 (445)
Q Consensus         4 ~~~~~~--~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~-------~~iv~~Ll~-----   69 (445)
                      +.+++.  ...|.||||+||..|+.++|+.|+. .|++++.+|. .|+||||+||..++       .++++++..     
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~-~gad~~~~d~-~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcCCc-ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            445554  3579999999999999999998885 6899999997 79999999998765       234443322     


Q ss_pred             -------------------------------------CCCC---------------------------------CCcccc
Q 013316           70 -------------------------------------WPGN---------------------------------DKVELE   79 (445)
Q Consensus        70 -------------------------------------~~~~---------------------------------~g~~v~   79 (445)
                                                           ....                                 .+..+|
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence                                                 0000                                 000146


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhh
Q 013316           80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL  125 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  125 (445)
                      .+|..|+||||+|+..|+.+++++|+++||+++.+|..|+|||||+
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            6677778888888888888888888888888888888888887443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.73  E-value=8.5e-19  Score=160.33  Aligned_cols=151  Identities=17%  Similarity=0.185  Sum_probs=116.1

Q ss_pred             CccCccCCCCCchHhHHHHHcCCHHHHHHHHh-------hCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCC
Q 013316            3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLR-------ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK   75 (445)
Q Consensus         3 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~-------~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g   75 (445)
                      .+++......|.||||+||..|+.++++.|+.       ..|+++|.+|. .|+||||+|+.+|+.+++++|+++    |
T Consensus        23 ~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~----G   97 (277)
T d2fo1e1          23 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKA----G   97 (277)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----T
T ss_pred             cCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC-CCCeeecccccccccccccccccc----c
Confidence            34454444469999999999999999887753       46899999997 899999999999999999999995    7


Q ss_pred             cccccccCCCCcH-------------------------------------------------------------------
Q 013316           76 VELEAQNMYGETP-------------------------------------------------------------------   88 (445)
Q Consensus        76 ~~v~~~d~~g~tp-------------------------------------------------------------------   88 (445)
                      ++++.+|.+|.||                                                                   
T Consensus        98 ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (277)
T d2fo1e1          98 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA  177 (277)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred             cccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccc
Confidence            7777776555554                                                                   


Q ss_pred             -------------HHHHHHcCCHHHHHHHH-hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhh
Q 013316           89 -------------LHMAAKNGCNEAAKLLL-AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEAC  154 (445)
Q Consensus        89 -------------Lh~A~~~g~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~  154 (445)
                                   ||+++..++.+++++++ ..|.+++.+|..|+||| |+|+..++.+++++|+++|+++..++..+.+
T Consensus       178 ~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL-~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T  256 (277)
T d2fo1e1         178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI-MLAAQEGRIEVVMYLIQQGASVEAVDATDHT  256 (277)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCSSCCCSSSCC
T ss_pred             ccccccccCCCCccccccccccccccccccccccccccccCCCCCCHH-HHHHHcCCHHHHHHHHHCcCCCCCcCCCCCC
Confidence                         44444455555555544 56777778888899999 7788888899999999999887777666655


Q ss_pred             hhhHH
Q 013316          155 SETKA  159 (445)
Q Consensus       155 ~~~~a  159 (445)
                      +...+
T Consensus       257 ~L~~A  261 (277)
T d2fo1e1         257 ARQLA  261 (277)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-17  Score=146.64  Aligned_cols=138  Identities=20%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC--------
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN--------   73 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~--------   73 (445)
                      .|++++..+ .|.||||+||..|+.+++++|+ ..+++++..+. .|.||||+|+..++.++++.++.....        
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~-~~g~d~~~~d~-~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  105 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK  105 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGG
T ss_pred             CCCCcccCCCCCCccccccccccccccccccc-ccccccccccc-ccccccccccccccccccchhhhhccccccccccc
Confidence            456666555 6888888888888888887665 46778888775 688888888888877777777654211        


Q ss_pred             ---------------------------CCcccccc-cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhh
Q 013316           74 ---------------------------DKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL  125 (445)
Q Consensus        74 ---------------------------~g~~v~~~-d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~  125 (445)
                                                 .|..++.. +.+|.||||+|+..|+.+++++|+++|+|++.+|.+|+||| ++
T Consensus       106 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl-~~  184 (221)
T d1iknd_         106 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY-QL  184 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGG-GG
T ss_pred             ccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHH-HH
Confidence                                       12233332 24567777777777777777777777777777777777777 55


Q ss_pred             hcCCCChHHHHHHHhhhh
Q 013316          126 SNGPGSAKLRELLLWHSE  143 (445)
Q Consensus       126 a~~~~~~~i~~~ll~~~~  143 (445)
                      |+..++.+++++|.+...
T Consensus       185 A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         185 TWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             CTTSSCHHHHHHHHTTSC
T ss_pred             HHHCCCHHHHHHHHHcCC
Confidence            666666777776665544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=8.3e-19  Score=139.11  Aligned_cols=104  Identities=22%  Similarity=0.189  Sum_probs=95.9

Q ss_pred             ChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC
Q 013316           49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG  128 (445)
Q Consensus        49 ~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~  128 (445)
                      .|||++|+.+|+.++|++|++.    |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||| |+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~----g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpL-h~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL-LSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT----TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHH-HHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh----hhccccccccccccccccccccccccccccccccceeeecccccccch-hhhhh
Confidence            4899999999999999999995    889999999999999999999999999999999999999999999999 78888


Q ss_pred             CCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316          129 PGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus       129 ~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                      .++.+++++|+++|+++..++..+.++..
T Consensus        78 ~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~  106 (118)
T d1myoa_          78 EGHVSCVKLLLSKGADKTVKGPDGLTALE  106 (118)
T ss_dssp             TTCCHHHHHHHTTCCCSSSSSSSTCCCCC
T ss_pred             cCchhhhhhhhcccccceeeCCCCCCHHH
Confidence            99999999999999988877766655543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.2e-18  Score=156.34  Aligned_cols=133  Identities=21%  Similarity=0.224  Sum_probs=117.9

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC----CcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY----NKAEIVKSLLEWPGNDKVELEAQNMYGE   86 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~----g~~~iv~~Ll~~~~~~g~~v~~~d~~g~   86 (445)
                      ..|.||||+||..|+.++++.|+...+.+++..+. .|.++++.+...    +..+++++|++.    |++++.+|..|.
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Li~~----ga~~n~~~~~g~  220 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGK  220 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHT----TCCSSCCCTTSC
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcccccC-CCCcccccccccccchHHHHHHHHHHHC----CCCCCccCCCCC
Confidence            45899999999999999999999888999999987 688777665433    346799999995    889999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316           87 TPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~  149 (445)
                      ||||+|+..|+.+++++|++ .|++++.+|.+|.||| |+|+..++.+++++|+++|++++.++
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL-~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            99999999999999999997 6999999999999999 88889999999999999999876543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=161.62  Aligned_cols=121  Identities=29%  Similarity=0.493  Sum_probs=97.4

Q ss_pred             CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM   91 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~   91 (445)
                      .|.||||.|+..++.++++.|+. .|.+++..+. .+.||||.|+..++.++++++++.    |+++|.+|.+|.||||+
T Consensus       263 ~g~~~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~~-~~~t~L~~~~~~~~~~~~~~ll~~----g~~in~~d~~G~T~Lh~  336 (408)
T d1n11a_         263 SGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQH----QADVNAKTKLGYSPLHQ  336 (408)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCS-SCCCHHHHHHHSSCSHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCCChhhhhhhcCcHHHHHHHHH-CCCccccccc-cccccchhhcccCcceeeeeeccc----cccccccCCCCCCHHHH
Confidence            57788888888888888877664 4677777775 577888888888888888888874    77888888888888888


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHH
Q 013316           92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL  139 (445)
Q Consensus        92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll  139 (445)
                      |+..|+.+++++|+++||+++.+|.+|+||| ++|...++.+++++|.
T Consensus       337 A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L-~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         337 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPL-AIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCSSSCCHH-HHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHH
Confidence            8888888888888888888888888888888 6777778888887764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.3e-17  Score=146.45  Aligned_cols=125  Identities=22%  Similarity=0.262  Sum_probs=109.4

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..+.++++.++..++.+++..++. .+...+..+. .|+||||+|+..|+.+++++|++.   .+.+++.+|.+|+||||
T Consensus       103 ~~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~---~~~~in~~d~~g~TpLh  177 (229)
T d1ixva_         103 NQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGL---GKSAVNWQDKQGWTPLF  177 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT---TCCCSCCCCTTSCCHHH
T ss_pred             cccccccccccccchhhhhhhhhh-hcccccccCC-CCCCccchhhhccccccccccccc---ccccccccccccCCchh
Confidence            357889999999999998887765 5677777776 799999999999999999999986   24678999999999999


Q ss_pred             HHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316           91 MAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE  144 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~  144 (445)
                      +|+..|+.+++++|++ .|++++.+|..|+||| ++|.   ..+++++|+++|+|
T Consensus       178 ~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l-~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         178 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAE-DVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTG-GGCS---CHHHHHHHHHHCCC
T ss_pred             hhcccccHHHHHHHHHhcCCCCCCcCCCCCCHH-HHHh---hHHHHHHHHHcCCC
Confidence            9999999999999996 6999999999999999 5555   35899999988864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.72  E-value=7.5e-17  Score=147.15  Aligned_cols=229  Identities=16%  Similarity=0.151  Sum_probs=141.6

Q ss_pred             hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      +++|.+..++.|.+++.....          -...++.+++|+||||||||++|+.+++.+.....   ..++.+++...
T Consensus        17 ~l~~Re~ei~~l~~~l~~~l~----------~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~---~~~~~~~~~~~   83 (276)
T d1fnna2          17 RLPHREQQLQQLDILLGNWLR----------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT---ARFVYINGFIY   83 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHH----------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC---CEEEEEETTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHh----------CCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccC---CcEEEecchhh
Confidence            478888877777776653310          11346789999999999999999999999865322   24555555432


Q ss_pred             ccc----------------ccCCchhHHHHHH-----HHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---cc
Q 013316          250 VGE----------------FVGHTGPKTRRRI-----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MD  305 (445)
Q Consensus       250 ~~~----------------~~g~~~~~~~~~~-----~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~  305 (445)
                      ...                ..+.....+...+     ......++++|++|.+....        ......++..   ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~~~~~~~~~~~  155 (276)
T d1fnna2          84 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDI--------LSTFIRLGQEADKLG  155 (276)
T ss_dssp             CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHH--------HHHHHHHTTCHHHHS
T ss_pred             hhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhh--------hhhHHHHHhcccccc
Confidence            110                1111222222221     11234788899998887521        1222222222   23


Q ss_pred             CCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH
Q 013316          306 GGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  384 (445)
Q Consensus       306 ~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (445)
                      ..++.+|++++.....  ...++++.+|+. ..|.|++|+.+|+.+|+++.++...         ....++++++..+. 
T Consensus       156 ~~~~~~i~~~~~~~~~--~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~---------~~~~~~~~~l~~ia-  223 (276)
T d1fnna2         156 AFRIALVIVGHNDAVL--NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL---------AEGSYSEDILQMIA-  223 (276)
T ss_dssp             SCCEEEEEEESSTHHH--HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB---------CTTSSCHHHHHHHH-
T ss_pred             ccceEEeecCCchhhh--hhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhc---------ccccccHHHHHHHH-
Confidence            4567777776654432  234788888764 5689999999999999998887532         12345666666443 


Q ss_pred             HHHHHh---hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316          385 KETTEK---QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  440 (445)
Q Consensus       385 ~~~~~~---~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  440 (445)
                      ......   ....||.|.+.+++++|...+..         ++...|+.+||++|.+++
T Consensus       224 ~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~---------~~~~~I~~edv~~A~~~~  273 (276)
T d1fnna2         224 DITGAQTPLDTNRGDARLAIDILYRSAYAAQQ---------NGRKHIAPEDVRKSSKEV  273 (276)
T ss_dssp             HHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhcCCCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHH
Confidence            332111   23368999999999888443222         233479999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.9e-17  Score=137.43  Aligned_cols=105  Identities=23%  Similarity=0.279  Sum_probs=89.7

Q ss_pred             ChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCH------------------------------
Q 013316           49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN------------------------------   98 (445)
Q Consensus        49 ~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~------------------------------   98 (445)
                      .||||.||+.|+.++|++||+.    |++++ .|..|.||||+|+..++.                              
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~----ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN----GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH----TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc----CCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence            4999999999999999999995    77776 689999999999986654                              


Q ss_pred             ---HHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           99 ---EAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        99 ---~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                         +++++++.+|++++.++.+|+||| ++|+..++.+++++|+++++++..++..+.++..-+
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~g~T~L-~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A  140 (153)
T d1awcb_          78 GHANIVEVLLKHGADVNAKDMLKMTAL-HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccceeeecccccCCccccccccCchHH-HhhhhcchhheeeeccccccCCcccCCCCCCHHHHH
Confidence               456777777888888999999999 888899999999999999999888777776665544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.9e-17  Score=137.29  Aligned_cols=95  Identities=26%  Similarity=0.290  Sum_probs=86.3

Q ss_pred             CCCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316           10 RSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE   86 (445)
Q Consensus        10 ~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~   86 (445)
                      ...|.||||+|+..   |+.++++.|+. +|+++|.++. .|+||||+||..|+.+++++|+++    |++++.+|..|.
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadin~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~----gad~~~~d~~g~  115 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTG-KGSTALHYCCLTDNAECLKLLLRG----KASIEIANESGE  115 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHH-cCCChhhhhh-hhcccccccccccccccccccccc----CccccccCCCCC
Confidence            45689999999975   67889988875 5789999997 799999999999999999999995    899999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC
Q 013316           87 TPLHMAAKNGCNEAAKLLLAHGAF  110 (445)
Q Consensus        87 tpLh~A~~~g~~~~~~~Ll~~ga~  110 (445)
                      ||||+|+..|+.+++++|++.++.
T Consensus       116 tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         116 TPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999997765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-17  Score=147.33  Aligned_cols=142  Identities=26%  Similarity=0.367  Sum_probs=109.4

Q ss_pred             CCchHhHHHHHcCCHHHHHHHH---hhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcH
Q 013316           12 AKPATIHGCAQSGDLLAFQRLL---RENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP   88 (445)
Q Consensus        12 ~~~t~L~~A~~~g~~~~v~~ll---~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tp   88 (445)
                      .|.||||+|+..|+.+.+..++   ...+.++|..+. .|+||||+|+..|+.+++++|++.    |++++.+|..|.||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~-~g~TpLh~A~~~~~~~iv~~L~~~----g~d~~~~d~~g~t~   75 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGA----GCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSC----CCCSCCCCTTCCCH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCC-CCCccccccccccccccccccccc----cccccccccccccc
Confidence            4899999999999976665443   346788999997 799999999999999999999995    77888877776666


Q ss_pred             HHHHHHcCCHHH---------------------------------------HHHHHhcCCCCcccc-cCCCChhhhhhcC
Q 013316           89 LHMAAKNGCNEA---------------------------------------AKLLLAHGAFIEAKA-NEGKTPLDHLSNG  128 (445)
Q Consensus        89 Lh~A~~~g~~~~---------------------------------------~~~Ll~~ga~~~~~~-~~g~tpl~~~a~~  128 (445)
                      ||+++..++.++                                       +.+|+..|+.++..+ .+|.||| |+|..
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L-~~A~~  154 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL-HLAVD  154 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHH
T ss_pred             cccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcc-ccccc
Confidence            666665555544                                       455555555665544 5799999 88888


Q ss_pred             CCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316          129 PGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus       129 ~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      .++.+++++|+++|+++..++..+.++...+
T Consensus       155 ~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A  185 (221)
T d1iknd_         155 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLT  185 (221)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred             cccHHHHHHHHhcCCcccccCCCCCCHHHHH
Confidence            8999999999999999888777766665543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-17  Score=134.61  Aligned_cols=95  Identities=22%  Similarity=0.216  Sum_probs=89.3

Q ss_pred             hHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCC
Q 013316           50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP  129 (445)
Q Consensus        50 tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~  129 (445)
                      ++||.||..|+.++|++|++.    |+++|.+|.+|+||||+|+..++.+++++|+++|++++.+|.+|+||| |+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~----g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpL-h~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL-HCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc----CCCccccccccccccccccccccccccccccccccccccccccCcccc-cccchh
Confidence            689999999999999999995    899999999999999999999999999999999999999999999999 788889


Q ss_pred             CChHHHHHHHhhhhhHHhhh
Q 013316          130 GSAKLRELLLWHSEEQRKRR  149 (445)
Q Consensus       130 ~~~~i~~~ll~~~~~~~~~~  149 (445)
                      ++.+++++|+++|+++...+
T Consensus        78 g~~~~v~~Ll~~ga~v~~~~   97 (130)
T d1ycsb1          78 NNVQVCKFLVESGAAVFAMT   97 (130)
T ss_dssp             TCHHHHHHHHHTTCCTTCCC
T ss_pred             hHHHHHHHHHHcCCCccccc
Confidence            99999999999998876543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-17  Score=132.68  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=88.1

Q ss_pred             CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316            1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE   79 (445)
Q Consensus         1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~   79 (445)
                      +++|++++..+ .|.||||+|+ .|+.++++.|+. .++++|..+...+.||||+|+..|+.+++++|+++    |++++
T Consensus        23 l~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~----ga~~~   96 (125)
T d1bi7b_          23 LEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA----GARLD   96 (125)
T ss_dssp             HTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCSS
T ss_pred             HHcCCccccccccccccccccc-cccccccccccc-ccccccccccccccccccccccccccccccccccc----ccccc
Confidence            46889999877 5999999765 799999987775 68899999874345799999999999999999995    88999


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHh
Q 013316           80 AQNMYGETPLHMAAKNGCNEAAKLLLA  106 (445)
Q Consensus        80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~  106 (445)
                      .+|..|.||||+|+.+|+.+++++|+.
T Consensus        97 ~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          97 VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=4.2e-17  Score=147.20  Aligned_cols=187  Identities=19%  Similarity=0.218  Sum_probs=114.0

Q ss_pred             HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC--------
Q 013316          167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT--------  238 (445)
Q Consensus       167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~--------  238 (445)
                      .|++++|++++++.|..+..               ....++++||+||||||||++|+++++.+........        
T Consensus         9 ~~~diig~~~~~~~L~~~~~---------------~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~   73 (252)
T d1sxje2           9 SLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV   73 (252)
T ss_dssp             SGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred             CHHHccCcHHHHHHHHHHHH---------------cCCCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccccc
Confidence            46789999999888876432               1234568999999999999999999998743221000        


Q ss_pred             --------------CCeEEeecccccccccCCch-hHHHHHHH-----------------HccCcEEEEcCccccccCCC
Q 013316          239 --------------DRVTEVQRTDLVGEFVGHTG-PKTRRRIK-----------------EAEGGILFVDEAYRLIPMQK  286 (445)
Q Consensus       239 --------------~~~~~~~~~~l~~~~~g~~~-~~~~~~~~-----------------~a~~~il~lDEid~l~~~~~  286 (445)
                                    .....+.++.     .+... ......+.                 .....+++|||+|.+..   
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~---  145 (252)
T d1sxje2          74 TASNRKLELNVVSSPYHLEITPSD-----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---  145 (252)
T ss_dssp             ---------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH---
T ss_pred             ccccchhhhhhccCCccceeeecc-----cccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEecccccccc---
Confidence                          0001111110     11111 11111111                 11235999999999875   


Q ss_pred             CCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccccccc
Q 013316          287 ADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSL  364 (445)
Q Consensus       287 ~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~  364 (445)
                              +.++.|+..++.  ..+.+|++++....     ..+++++|| ..|+|++|+.+++.+++...+.+..    
T Consensus       146 --------~~~~~l~~~~e~~~~~~~~Il~tn~~~~-----i~~~l~sR~-~~i~~~~~~~~~~~~~l~~i~~~e~----  207 (252)
T d1sxje2         146 --------DAQAALRRTMEKYSKNIRLIMVCDSMSP-----IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER----  207 (252)
T ss_dssp             --------HHHHHHHHHHHHSTTTEEEEEEESCSCS-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT----
T ss_pred             --------ccchhhhcccccccccccceeeeccccc-----hhhhhhcch-heeeecccchhhHHHHHHHHHHHcC----
Confidence                    556677777764  45666666554321     268899999 7899999999999999998876642    


Q ss_pred             ccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          365 LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                         +.+..   .+++. .+...+.|      +.|.+.+.++.+
T Consensus       208 ---~~~~~---~~~l~-~i~~~s~G------d~R~ai~~Lq~~  237 (252)
T d1sxje2         208 ---IQLET---KDILK-RIAQASNG------NLRVSLLMLESM  237 (252)
T ss_dssp             ---CEECC---SHHHH-HHHHHHTT------CHHHHHHHHTHH
T ss_pred             ---CCCCc---HHHHH-HHHHHcCC------cHHHHHHHHHHH
Confidence               23322   24444 45556644      444445556554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.61  E-value=6.4e-18  Score=159.96  Aligned_cols=107  Identities=12%  Similarity=0.039  Sum_probs=86.3

Q ss_pred             CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC-CCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc--
Q 013316            2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP-VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE--   77 (445)
Q Consensus         2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~--   77 (445)
                      +.|++.+..+ .|+||||+||..|+.++|+.|+. .+++++..+. ..|+||||+||.+||.++|++|++.    |++  
T Consensus       114 ~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~----~~~~~  188 (346)
T d2ajaa1         114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL----APTEA  188 (346)
T ss_dssp             -CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHS----CGGGH
T ss_pred             hCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccccCCCChhHHHHHHhhHHHHHHHHHc----CCccc
Confidence            5788888776 69999999999999999998886 4777776542 1489999999999999999999996    443  


Q ss_pred             -cccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 013316           78 -LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA  113 (445)
Q Consensus        78 -v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~  113 (445)
                       .+..+..+.||+|.|+..|+.+++++|++.|++++.
T Consensus       189 ~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             ccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence             345556677888889999999999999999876543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.4e-15  Score=146.62  Aligned_cols=142  Identities=27%  Similarity=0.316  Sum_probs=126.4

Q ss_pred             CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316           11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH   90 (445)
Q Consensus        11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh   90 (445)
                      ..+.||||+|+..++.++++.++. .+...+..+. .|.||||.|+..++.+++++|++.    |++++..+..+.||||
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~~-~~~~~~~~~~-~g~~~l~~a~~~~~~~i~~~Ll~~----g~~~~~~~~~~~t~L~  302 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKH----GVMVDATTRMGYTPLH  302 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCSSCCCHHH
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhhc-cccccccccC-CCCChhhhhhhcCcHHHHHHHHHC----CCccccccccccccch
Confidence            357899999999999999887764 5677777776 799999999999999999999984    8899999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316           91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA  159 (445)
Q Consensus        91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a  159 (445)
                      .++..++.++++++++.|++++.+|.+|.||| |.|+..++.+++++|+++|++++.++..+.++...+
T Consensus       303 ~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~L-h~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         303 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             hhcccCcceeeeeeccccccccccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999999999999999 677788999999999999999888877666665444

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.59  E-value=3.7e-15  Score=139.95  Aligned_cols=156  Identities=21%  Similarity=0.262  Sum_probs=99.3

Q ss_pred             HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC----------
Q 013316          168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP----------  237 (445)
Q Consensus       168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~----------  237 (445)
                      |.+|+|++.+|..|.-.+  +              .....|+||+||||||||++||+++..+.......          
T Consensus         6 f~~I~Gq~~~kral~laa--~--------------~~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~   69 (333)
T d1g8pa_           6 FSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE   69 (333)
T ss_dssp             GGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred             hhhccCcHHHHHHHHHHH--h--------------ccCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccc
Confidence            678999999988665321  1              01235899999999999999999998762110000          


Q ss_pred             ----------------CCCeEEeecccccccccCCch-hH---------HHHHHHHccCcEEEEcCccccccCCCCCCch
Q 013316          238 ----------------TDRVTEVQRTDLVGEFVGHTG-PK---------TRRRIKEAEGGILFVDEAYRLIPMQKADDKD  291 (445)
Q Consensus       238 ----------------~~~~~~~~~~~l~~~~~g~~~-~~---------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~  291 (445)
                                      ..+++....+.-.+..+|... ..         ....+..|.+||+||||+..+.+        
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~--------  141 (333)
T d1g8pa_          70 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--------  141 (333)
T ss_dssp             GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH--------
T ss_pred             cccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHH--------
Confidence                            012222222211222233210 00         01256677889999999977766        


Q ss_pred             hHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHHHHHHHH
Q 013316          292 YGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILHI  354 (445)
Q Consensus       292 ~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~  354 (445)
                         ++++.|++.|++++               +.+|+++|+.+-.    ..+++++||+..+.++.|. .+++.++...
T Consensus       142 ---~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~----l~~~llDRf~~~i~v~~~~~~~~~~~~~~~  213 (333)
T d1g8pa_         142 ---HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGD----LRPQLLDRFGLSVEVLSPRDVETRVEVIRR  213 (333)
T ss_dssp             ---HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCC----CCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred             ---HHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccc----cccchhhhhcceeeccCcchhhHHHHHHHh
Confidence               89999999998643               4666666665432    3788999999999888774 5555555543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.9e-14  Score=125.04  Aligned_cols=129  Identities=12%  Similarity=0.085  Sum_probs=88.0

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccCC-chhHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGH-TGPKTRRRI  265 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~g~-~~~~~~~~~  265 (445)
                      ..+..+||+||||+|||++|+.+|+.+........                 ..+..+....    .-+. .-..++++.
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~i~~~~ir~l~   97 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK----GKNTLGVDAVREVT   97 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT----TCSSBCHHHHHHHH
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhh----cccccccchhhHHh
Confidence            34556999999999999999999998854221100                 0111111110    0000 123344555


Q ss_pred             HHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCccccccccc
Q 013316          266 KEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTK  336 (445)
Q Consensus       266 ~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~  336 (445)
                      +..       ...|++|||+|.+..           ++++.|++.|++  ..+.+|++++....     ..|++++|+ .
T Consensus        98 ~~~~~~~~~~~~kviIide~d~l~~-----------~a~n~Llk~lEep~~~~~fIl~t~~~~~-----ll~tI~SRc-~  160 (207)
T d1a5ta2          98 EKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPPAETWFFLATREPER-----LLATLRSRC-R  160 (207)
T ss_dssp             HHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCCTTEEEEEEESCGGG-----SCHHHHTTS-E
T ss_pred             hhhhhccccCccceEEechhhhhhh-----------hhhHHHHHHHHhhcccceeeeeecChhh-----hhhhhccee-E
Confidence            433       336999999999987           789999999997  56777776654432     278899999 9


Q ss_pred             ceeCCCCCHHHHHHHHH
Q 013316          337 FFHFNDFNSEELAKILH  353 (445)
Q Consensus       337 ~i~~~~~~~~~~~~il~  353 (445)
                      .+.|++|+.+++..+++
T Consensus       161 ~i~~~~~~~~~~~~~L~  177 (207)
T d1a5ta2         161 LHYLAPPPEQYAVTWLS  177 (207)
T ss_dssp             EEECCCCCHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHH
Confidence            99999999999888775

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-14  Score=132.62  Aligned_cols=109  Identities=21%  Similarity=0.254  Sum_probs=90.5

Q ss_pred             CccCccCCC-CCchHhHHHHH---cCCH-HHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQ---SGDL-LAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE   77 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~---~g~~-~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~   77 (445)
                      .|++++..+ .+.++++.+..   .++. .+++.|+ +.+++++.++. .|.||||+|+..|+.+++++|+..   .|++
T Consensus       171 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li-~~ga~~n~~~~-~g~t~L~~a~~~~~~~~v~~lL~~---~g~d  245 (285)
T d1wdya_         171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL-DHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQ---EHIE  245 (285)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH-HTTCCSSCCCT-TSCCHHHHHHHTTCHHHHHHHHHS---SSCC
T ss_pred             cCCCcccccCCCCcccccccccccchHHHHHHHHHH-HCCCCCCccCC-CCCCccchhhhcCcHHHHHHHHHc---CCCC
Confidence            466676665 46677665544   3444 4555555 57899999987 799999999999999999999975   4889


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 013316           78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN  116 (445)
Q Consensus        78 v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~  116 (445)
                      ++.+|.+|.||||+|+..|+.+++++|+++||++|++|.
T Consensus       246 in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         246 INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999999999999999999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=9.7e-15  Score=127.14  Aligned_cols=96  Identities=20%  Similarity=0.227  Sum_probs=85.3

Q ss_pred             CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316            3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ   81 (445)
Q Consensus         3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~   81 (445)
                      ++++.+..+ .|.||||+++..|....+..++. .+.+++..+. .|.||||+|+..|+.+++++|+++    |++++.+
T Consensus       112 ~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~----gad~n~~  185 (209)
T d1ot8a_         112 ADADINAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDD-KDETPLFLAAREGSYEASKALLDN----FANREIT  185 (209)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCC
T ss_pred             hcccccccCCCCCCcchhhcccCcceeeeeecc-cccccccccc-ccccccchhccccHHHHHHHHHHC----CCCCCCc
Confidence            455555554 68999999999999999987775 5788999987 799999999999999999999995    8899999


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHH
Q 013316           82 NMYGETPLHMAAKNGCNEAAKLL  104 (445)
Q Consensus        82 d~~g~tpLh~A~~~g~~~~~~~L  104 (445)
                      |..|.||||+|+..|+.++|++|
T Consensus       186 d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         186 DHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999976

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=5.8e-15  Score=136.62  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=92.9

Q ss_pred             CCCCcCCC-CCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCH-------HHHHH----
Q 013316           36 NPSLLNER-NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-------EAAKL----  103 (445)
Q Consensus        36 ~~~~~~~~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~-------~~~~~----  103 (445)
                      .+.++|.. |. .|+||||+||..|+.++|++|++.    |++++.+|..|+||||.|+..++.       +++++    
T Consensus        95 ~~~dvn~~~D~-~G~T~LH~Aa~~g~~~~v~~Ll~~----gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~  169 (301)
T d1sw6a_          95 TQLNLNIPVDE-HGNTPLHWLTSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC  169 (301)
T ss_dssp             SCCCSCSCCST-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred             cCCCcCcCcCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh
Confidence            45677766 55 799999999999999999999995    899999999999999999976541       22222    


Q ss_pred             --------------------------------------HHhcCCC-----------------------------------
Q 013316          104 --------------------------------------LLAHGAF-----------------------------------  110 (445)
Q Consensus       104 --------------------------------------Ll~~ga~-----------------------------------  110 (445)
                                                            ++..+..                                   
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence                                                  1222221                                   


Q ss_pred             --CcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316          111 --IEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET  157 (445)
Q Consensus       111 --~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~  157 (445)
                        +|.+|.+|+||| |+|+..++.+++++|+++|+++..++..+.++..
T Consensus       250 ~~in~~D~~G~TpL-h~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~  297 (301)
T d1sw6a_         250 NMLNAQDSNGDTCL-NIAARLGNISIVDALLDYGADPFIANKSGLRPVD  297 (301)
T ss_dssp             HTTTCCCTTSCCHH-HHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             cCccCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence              577899999999 8888999999999999999999888877766643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.43  E-value=6.6e-13  Score=115.47  Aligned_cols=168  Identities=18%  Similarity=0.192  Sum_probs=105.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCccccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRLI  282 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid~l~  282 (445)
                      .+++|+||||||||.++.++++++...+.    .++.++..++...+...    ......+.+.  ...+|+||+||.+.
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~  110 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGY----RVIYSSADDFAQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLS  110 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTC----CEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGT
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCcc----ceEEechHHHHHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhc
Confidence            45899999999999999999999987543    67777776654432211    1112222222  34799999999998


Q ss_pred             cCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316          283 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  360 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~  360 (445)
                      .+..     ........+-..++.+..+++.++.+.....  ...|.|++||.  ..+.++ |+.+++.++++.++.+..
T Consensus       111 ~~~~-----~~~~lf~lin~~~~~~~~iiits~~~p~~l~--~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rg  182 (213)
T d1l8qa2         111 GKER-----TQIEFFHIFNTLYLLEKQIILASDRHPQKLD--GVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFN  182 (213)
T ss_dssp             TCHH-----HHHHHHHHHHHHHHTTCEEEEEESSCGGGCT--TSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTT
T ss_pred             CchH-----HHHHHHHHHHHHhhccceEEEecCCcchhcc--ccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcC
Confidence            6321     1112222222334456665655544332211  12688999984  556776 677899999999887641


Q ss_pred             ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316          361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  407 (445)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~  407 (445)
                                 ..++++++..++.+ .       .|.|++..++...
T Consensus       183 -----------l~l~~~v~~yl~~~-~-------~~~R~L~~~l~~l  210 (213)
T d1l8qa2         183 -----------LELRKEVIDYLLEN-T-------KNVREIEGKIKLI  210 (213)
T ss_dssp             -----------CCCCHHHHHHHHHH-C-------SSHHHHHHHHHHH
T ss_pred             -----------CCCCHHHHHHHHHh-c-------CcHHHHHHHHHHh
Confidence                       24566777766543 2       3578877777654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-13  Score=119.75  Aligned_cols=94  Identities=28%  Similarity=0.290  Sum_probs=81.4

Q ss_pred             CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316           47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS  126 (445)
Q Consensus        47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a  126 (445)
                      +|+||||+||.+|+.+++++|++.....|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..+..|.+++ +.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~-~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA-HLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccc-ccc
Confidence            5999999999999999999887522124889999999999999999999999999999999999999999999999 667


Q ss_pred             cCCCChHHHHHHHhh
Q 013316          127 NGPGSAKLRELLLWH  141 (445)
Q Consensus       127 ~~~~~~~i~~~ll~~  141 (445)
                      .......+++.+...
T Consensus        81 ~~~~~~~~~~~~~~~   95 (228)
T d1k1aa_          81 CEHRSPTCLRALLDS   95 (228)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             cccccccchhhhhhc
Confidence            777777777666543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.35  E-value=2.4e-12  Score=120.49  Aligned_cols=157  Identities=14%  Similarity=0.077  Sum_probs=91.7

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc-cCCchhHHHHHHHHccCcEEEEcCccccc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF-VGHTGPKTRRRIKEAEGGILFVDEAYRLI  282 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~a~~~il~lDEid~l~  282 (445)
                      .....++|+||||||||++|+++|..++.       +|+.+++++..+.+ +|..          ....+.++|+++...
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~-------~~i~in~s~~rs~~~l~~~----------~~~~~~l~d~~~~~~  214 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLDRLNFELGVA----------IDQFLVVFEDVKGTG  214 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTTTHHHHHGGG----------TTCSCEEETTCCCST
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEECcchhhHHHHHhH----------HHHHHHHHHHHHHhh
Confidence            34568999999999999999999999987       89999988765542 2211          223445556665554


Q ss_pred             cCCCCCCchhHHHHHHHHHhhccCCc----------------EEEEEecCchhHHHHHhhCcccc-cccccceeCCCCCH
Q 013316          283 PMQKADDKDYGIEALEEIMSVMDGGK----------------VVVIFAGYSEPMKRVIASNEGFC-RRVTKFFHFNDFNS  345 (445)
Q Consensus       283 ~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~i~a~~~~~~~~~~~~~~~l~-~R~~~~i~~~~~~~  345 (445)
                      ..+.........+.++.|...++++.                ..+|++|+...       .|.++ .||++.+.|..|+.
T Consensus       215 ~~~~~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~-------~~~~r~~Rf~~~i~~~~~~~  287 (362)
T d1svma_         215 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYS-------VPKTLQARFVKQIDFRPKDY  287 (362)
T ss_dssp             TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCC-------CCHHHHTTEEEEEECCCCHH
T ss_pred             hhccCCCCeEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeeccccc-------ccccccccCceEEeecCCCc
Confidence            43332222222233333333333210                12555554211       12222 29999998877775


Q ss_pred             HHH-HHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316          346 EEL-AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  395 (445)
Q Consensus       346 ~~~-~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (445)
                      ..+ .+++...+++.           ......+.+..++..++++|.+...
T Consensus       288 ~~~~~~~l~~i~~~~-----------~l~~~~~~L~~li~~~s~~D~~~~i  327 (362)
T d1svma_         288 LKHCLERSEFLLEKR-----------IIQSGIALLLMLIWYRPVAEFAQSI  327 (362)
T ss_dssp             HHHHHHTCTHHHHTT-----------CTTCHHHHHHHHHHHSCGGGSCGGG
T ss_pred             HHHHHHHHHHHhccc-----------CCCCCHHHHHHHccCCCHHHHHHHH
Confidence            444 35555555543           2245566777778777766665444

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=3.2e-11  Score=103.18  Aligned_cols=119  Identities=11%  Similarity=-0.009  Sum_probs=84.3

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVD  276 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lD  276 (445)
                      ..+.++||+||||||||++|+.++........ ....|+.+.+..-   -.  .-..++++.+.+       ...|++||
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~-~h~D~~~i~~~~~---~I--~Id~IR~i~~~~~~~~~~~~~KviIId   86 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEGE---NI--GIDDIRTIKDFLNYSPELYTRKYVIVH   86 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSSS---CB--CHHHHHHHHHHHTSCCSSSSSEEEEET
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhcccc-CCCCEEEEeCCcC---CC--CHHHHHHHHHHHhhCcccCCCEEEEEe
Confidence            45779999999999999999999998764222 2224666665321   11  234455555443       23699999


Q ss_pred             CccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCH
Q 013316          277 EAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS  345 (445)
Q Consensus       277 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~  345 (445)
                      |+|.+..           ++++.||+.|++  ...++|++|+....     ..|++++|| +.+.|+.|+.
T Consensus        87 ~ad~l~~-----------~aqNaLLK~LEEPp~~t~fiLit~~~~~-----ll~TI~SRC-~~i~~~~p~~  140 (198)
T d2gnoa2          87 DCERMTQ-----------QAANAFLKALEEPPEYAVIVLNTRRWHY-----LLPTIKSRV-FRVVVNVPKE  140 (198)
T ss_dssp             TGGGBCH-----------HHHHHTHHHHHSCCTTEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCHH
T ss_pred             Cccccch-----------hhhhHHHHHHhCCCCCceeeeccCChhh-----CHHHHhcce-EEEeCCCchH
Confidence            9999987           889999999996  45555555544322     278999999 8999987753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.84  E-value=7.1e-08  Score=86.48  Aligned_cols=157  Identities=15%  Similarity=0.183  Sum_probs=88.9

Q ss_pred             HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ++++|.+...+++.+                    .....++++||+|+|||++++.++..++.       .+..+++..
T Consensus        12 ~~f~GR~~el~~l~~--------------------~~~~~i~i~G~~G~GKTsLl~~~~~~~~~-------~~~~i~~~~   64 (283)
T d2fnaa2          12 KDFFDREKEIEKLKG--------------------LRAPITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRK   64 (283)
T ss_dssp             GGSCCCHHHHHHHHH--------------------TCSSEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGG
T ss_pred             hhCCChHHHHHHHHh--------------------ccCCEEEEEcCCCCcHHHHHHHHHHHCCC-------CeEEEEecc
Confidence            458898877666654                    13468999999999999999999887754       333333322


Q ss_pred             cccccc----------------------------------------------CCchhHHHH---HHHH--ccCcEEEEcC
Q 013316          249 LVGEFV----------------------------------------------GHTGPKTRR---RIKE--AEGGILFVDE  277 (445)
Q Consensus       249 l~~~~~----------------------------------------------g~~~~~~~~---~~~~--a~~~il~lDE  277 (445)
                      ......                                              ......+..   .+..  .++.++++||
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~  144 (283)
T d2fnaa2          65 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDE  144 (283)
T ss_dssp             GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEET
T ss_pred             ccccccccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccch
Confidence            111000                                              000111122   2222  2447899999


Q ss_pred             ccccccCCCCCCchhHHHHHHHHHhhcc-CCcEEEEEecCchhH-HHHHh---hCcccccccccceeCCCCCHHHHHHHH
Q 013316          278 AYRLIPMQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEPM-KRVIA---SNEGFCRRVTKFFHFNDFNSEELAKIL  352 (445)
Q Consensus       278 id~l~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~i~a~~~~~~-~~~~~---~~~~l~~R~~~~i~~~~~~~~~~~~il  352 (445)
                      ++.+.....   .++    ...+...++ ...+..+.++..... ..+..   ....+..|+...+.+++++.++..+++
T Consensus       145 ~~~~~~~~~---~~~----~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l  217 (283)
T d2fnaa2         145 AQELVKLRG---VNL----LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL  217 (283)
T ss_dssp             GGGGGGCTT---CCC----HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred             hhhhcccch---HHH----HHHHHHHHHhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHH
Confidence            999876332   122    222222222 244555554443322 22211   122344455678999999999999999


Q ss_pred             HHHHhcc
Q 013316          353 HIKMNNQ  359 (445)
Q Consensus       353 ~~~l~~~  359 (445)
                      ...+...
T Consensus       218 ~~~~~~~  224 (283)
T d2fnaa2         218 RRGFQEA  224 (283)
T ss_dssp             HHHHHHH
T ss_pred             Hhhhhhc
Confidence            8877653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.57  E-value=1e-08  Score=92.04  Aligned_cols=44  Identities=18%  Similarity=0.267  Sum_probs=37.5

Q ss_pred             CCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 013316          202 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  252 (445)
Q Consensus       202 ~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~  252 (445)
                      ....|.++||+||||||||++|++||.+++.       +|+.++++.+...
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~-------~~~~i~~d~~~~~   71 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQG-------NVIVIDNDTFKQQ   71 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTT-------CCEEECTHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEecHHHHHH
Confidence            3456788999999999999999999999876       8889998876543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.50  E-value=2e-07  Score=77.68  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=23.1

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|++.||||+||||+++.|+..+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            6899999999999999999998864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.3e-06  Score=69.68  Aligned_cols=26  Identities=31%  Similarity=0.554  Sum_probs=23.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+|+|.|||||||||+|+.||+.++.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            47999999999999999999999865

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.86  E-value=0.0001  Score=65.42  Aligned_cols=46  Identities=15%  Similarity=0.012  Sum_probs=33.3

Q ss_pred             hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHH
Q 013316          171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ++|.+.-+++|.+++....             ......|.++|++|+|||++|+.+.+.
T Consensus        22 ~~gR~~~~~~i~~~L~~~~-------------~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          22 CYIREYHVDRVIKKLDEMC-------------DLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SCCCHHHHHHHHHHHHHHT-------------TSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeCcHHHHHHHHHHHHhcc-------------CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            6788877777776554321             122345779999999999999999765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.84  E-value=2.8e-06  Score=69.87  Aligned_cols=27  Identities=30%  Similarity=0.528  Sum_probs=24.2

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+.++|.|||||||||+|+.|++.++.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~   30 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGL   30 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCC
Confidence            357899999999999999999998865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.84  E-value=1.9e-06  Score=71.81  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=24.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..|+|.|||||||||+|++||+.++.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~   33 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNT   33 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457999999999999999999998765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.80  E-value=1.1e-05  Score=66.70  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....++|+|||+||||++|.+|.+.++
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhC
Confidence            345799999999999999999998875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=4.7e-06  Score=68.20  Aligned_cols=31  Identities=29%  Similarity=0.614  Sum_probs=26.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      +.++|.|+||+||||+++.+|+.++.       +|+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~-------~fiD~   32 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGV-------GLLDT   32 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC-------CEEEH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC-------CeEee
Confidence            35788899999999999999999987       77754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.75  E-value=5.5e-06  Score=67.53  Aligned_cols=30  Identities=30%  Similarity=0.526  Sum_probs=26.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  244 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~  244 (445)
                      +++|.|+||+||||+|+.||+.++.       +|+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~-------~~~d~   31 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDL-------VFLDS   31 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC-------EEEEH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCC-------CEEec
Confidence            6889999999999999999999977       77653

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.74  E-value=6.4e-06  Score=67.74  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=24.1

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .+++|.|+||+||||+|+.+|+.++.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            56889999999999999999999987

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.71  E-value=7.5e-06  Score=67.30  Aligned_cols=28  Identities=32%  Similarity=0.507  Sum_probs=24.6

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+.+|+|+||||+||||+|+.|++.+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3566799999999999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.70  E-value=4e-06  Score=70.28  Aligned_cols=28  Identities=18%  Similarity=0.383  Sum_probs=24.7

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|..++|.||||+||||+|+.|++.++.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~   29 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQL   29 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCC
Confidence            3678999999999999999999998743

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.6e-05  Score=65.69  Aligned_cols=28  Identities=32%  Similarity=0.521  Sum_probs=25.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .+|+|+||||||||++++.++..+...+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            5799999999999999999999997654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.64  E-value=6e-06  Score=68.02  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=29.1

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      .-++|.|||||||||+|+.+++.++.       +++.++...+
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~-------~~~~~~~d~~   40 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGV-------PKVHFHSDDL   40 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSS-------CEEEECTTHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecHHHH
Confidence            35789999999999999999987655       7777766544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.61  E-value=1.6e-05  Score=65.57  Aligned_cols=29  Identities=28%  Similarity=0.287  Sum_probs=25.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      +..|+|+|+||+||||+|+.|++.+...+
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~~~~   34 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLNQQG   34 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            44577999999999999999999998744

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.58  E-value=1.8e-05  Score=64.92  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..-|+|+||||+||||+|+.|++.++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            346889999999999999999998765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.00022  Score=65.55  Aligned_cols=26  Identities=35%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...++++||||||||+++..+-..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~  188 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALI  188 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHH
Confidence            35788999999999988765544443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.53  E-value=1.3e-05  Score=65.53  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      -++|.|||||||||+|+.|++.++
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999998864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=1.9e-05  Score=64.58  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=23.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +.-++|.|||||||||+|+.|++.++.
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~~   32 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLHA   32 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            334677999999999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=0.00013  Score=61.64  Aligned_cols=29  Identities=34%  Similarity=0.709  Sum_probs=25.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      |.-|++.|.||+||||+|+.|++.++..+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~   30 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIG   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            45688999999999999999999998744

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.49  E-value=2.4e-05  Score=65.57  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=24.2

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..|.-|++.||||+||||+|+.||+.++
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3456788999999999999999999874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.00015  Score=59.25  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..|.-+++.|+||+||||+|+.++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45667889999999999999988654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.45  E-value=0.00063  Score=57.10  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=21.3

Q ss_pred             CCCCCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          202 GARRPPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       202 ~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      ..+.|..++|.||+|+||||.+-.||..+...
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~   39 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKK   39 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            34556678899999999999888888777653

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.44  E-value=0.00027  Score=55.05  Aligned_cols=28  Identities=18%  Similarity=-0.015  Sum_probs=20.2

Q ss_pred             CCCeeEeecCCCCchhHHHH-HHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVAR-ILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~-~la~~~~~  232 (445)
                      ....+++++|||+|||..|- ++......
T Consensus         6 ~~~~~il~~~tGsGKT~~~~~~~~~~~~~   34 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFLPQILAECAR   34 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred             cCCcEEEEcCCCCChhHHHHHHHHHHhhh
Confidence            35688999999999997763 44444433

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4e-05  Score=64.00  Aligned_cols=29  Identities=31%  Similarity=0.332  Sum_probs=24.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      +..|+|+|+||+||||+|+.|++.++...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~   47 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVCHG   47 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            33566899999999999999999998743

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=3.5e-05  Score=63.75  Aligned_cols=25  Identities=36%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++|.||||+||||+|+.|++.++.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~   26 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGI   26 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            6899999999999999999998854

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.40  E-value=4.1e-05  Score=63.30  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|+|.||||+||||+|+.||+.++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~   26 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            5889999999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.35  E-value=3.9e-05  Score=61.31  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.1

Q ss_pred             eeEeecCCCCchhHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      -|+|+||||+||||+|+.|...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4778999999999999988654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.34  E-value=6.1e-05  Score=62.80  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=22.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ...++|.||||+||||+|+.||+.++
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34688899999999999999999874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=4.9e-05  Score=63.61  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      |.-|+|.||||+||||.|+.||+.++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.28  E-value=3.4e-05  Score=64.72  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG  251 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~  251 (445)
                      .+..|+|.||||+||||+|+.|++.+         .|..++..++..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~---------g~~~is~g~llr   44 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY---------GYTHLSTGDLLR   44 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT---------CCEEEEHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh---------CCeeEeccHHHH
Confidence            35678899999999999999999875         345566655543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.28  E-value=7.1e-05  Score=61.92  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|+|.||||+||||+|+.||+.++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~   26 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGT   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            5889999999999999999998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0015  Score=54.71  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=24.6

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      ...|..++|.||+|+||||.+-.+|..+...
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~   36 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ   36 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            4456678899999999998888888877653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.25  E-value=7.7e-05  Score=62.16  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=23.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ....++|.||||+||||+|+.||+.++
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHC
Confidence            355788999999999999999998763

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=7.9e-05  Score=61.52  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=22.6

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..++|.||||+||||+|+.||+.++
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999999874

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.22  E-value=0.00037  Score=54.32  Aligned_cols=20  Identities=15%  Similarity=0.175  Sum_probs=16.3

Q ss_pred             CeeEeecCCCCchhHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARIL  226 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~l  226 (445)
                      ...++.+|+|+|||+++-.+
T Consensus         9 ~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHH
Confidence            46789999999999887443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.20  E-value=0.0024  Score=53.30  Aligned_cols=29  Identities=28%  Similarity=0.246  Sum_probs=23.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      +.-++|.||+|+||||.+-.||..+...+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g   38 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKG   38 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            34567899999999998888888886644

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=9.3e-05  Score=60.95  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.5

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++|.||||+||||+|+.|++.++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~   26 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGI   26 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999998753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.19  E-value=0.00042  Score=59.79  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=23.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..-++++||||+|||++|..++.....
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~   52 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACA   52 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4556889999999999999999888654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00013  Score=59.11  Aligned_cols=28  Identities=39%  Similarity=0.487  Sum_probs=24.7

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      +.+.|+|+||+||||+++.|++.+...+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g   30 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARG   30 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            3688999999999999999999987744

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00013  Score=62.30  Aligned_cols=26  Identities=23%  Similarity=0.451  Sum_probs=22.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +-|.+.||||+||+|.|+.|++.++.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl   29 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQW   29 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46778899999999999999999853

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.15  E-value=0.00013  Score=60.08  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=24.5

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .-|+|.|+||+||||+++.|++.++..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999999999997644

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.0023  Score=53.63  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=26.1

Q ss_pred             CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          201 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       201 ~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      +....|..++|.||+|+||||.+-.||..+...+
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~   39 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG   39 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            3455666788999999999988777887775533

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=8.8e-05  Score=62.12  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..-++|.||||+||||+|+.|++.++
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34577899999999999999999764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.06  E-value=0.00019  Score=59.32  Aligned_cols=28  Identities=32%  Similarity=0.388  Sum_probs=24.2

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      -++|.|+||+||||+++.|++.+...+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~~~   30 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQGI   30 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            3678999999999999999999986443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.04  E-value=0.0037  Score=52.06  Aligned_cols=30  Identities=30%  Similarity=0.430  Sum_probs=24.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      .+..++|.||+|+||||.+-.||..+...+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g   34 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG   34 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            456788999999999988888888776533

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0048  Score=52.55  Aligned_cols=119  Identities=16%  Similarity=0.134  Sum_probs=62.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH--cCCCCCCCeEEeeccc-ccc---------c---ccCCchhHHHHHHHHcc-
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM--VGILPTDRVTEVQRTD-LVG---------E---FVGHTGPKTRRRIKEAE-  269 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~--~~~~~~~~~~~~~~~~-l~~---------~---~~g~~~~~~~~~~~~a~-  269 (445)
                      ...++++||...|||++.|.++...-.  .+.........+..-+ +..         .   .|...-..+..+++.+. 
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~  120 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE  120 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCT
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhccc
Confidence            356889999999999999999876532  2221111211221111 110         0   11112245566777764 


Q ss_pred             CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc-cCCcEEEEEecCchhHHHHHhhCccc
Q 013316          270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMKRVIASNEGF  330 (445)
Q Consensus       270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~i~a~~~~~~~~~~~~~~~l  330 (445)
                      .++++|||+-+=..      ...+..+...++..+ ......+|.+|............+.+
T Consensus       121 ~sLvliDE~~~gT~------~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~~~~~~~~v  176 (234)
T d1wb9a2         121 YSLVLMDEIGRGTS------TYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGV  176 (234)
T ss_dssp             TEEEEEESCCCCSS------SSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTE
T ss_pred             ccEEeecccccCCC------hhhhhHHHHHhhhhhhccccceEEEecchHHHhhhhhcccce
Confidence            58999999933221      222333334444434 45556677777655544433334433

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.97  E-value=0.00088  Score=55.41  Aligned_cols=29  Identities=28%  Similarity=0.275  Sum_probs=24.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVG  234 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~  234 (445)
                      +.-|-+.||+|+||||+|+.|+..++..+
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~~~~   50 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLREQG   50 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            33455899999999999999999998744

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.92  E-value=0.00023  Score=60.62  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=21.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|.+.||||+||||+|+.||+.++.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~   29 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGF   29 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3557799999999999999999854

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.88  E-value=0.00078  Score=56.66  Aligned_cols=44  Identities=16%  Similarity=0.147  Sum_probs=32.0

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHHc-CCCCCCCeEEeecccccc
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVG  251 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~-~~~~~~~~~~~~~~~l~~  251 (445)
                      ..+..|+|+|.||+||||+|+.|++.+... +.    +++.++...+..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~----~~~~ldgD~iR~   66 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRV----HAYRLDGDNIRF   66 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC----CEEEECHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCc----eEEEEcchHHHH
Confidence            345578899999999999999999877532 22    566666665443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.71  E-value=0.0065  Score=50.42  Aligned_cols=19  Identities=21%  Similarity=0.315  Sum_probs=16.2

Q ss_pred             CCeeEeecCCCCchhHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVAR  224 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~  224 (445)
                      ..++++.+|+|+|||++|-
T Consensus        40 ~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHH
Confidence            3579999999999998874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00046  Score=57.29  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=22.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +|+|+||||+|||++++.+++....
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCC
Confidence            5899999999999999999988753

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.68  E-value=0.0022  Score=53.69  Aligned_cols=24  Identities=29%  Similarity=0.162  Sum_probs=19.2

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      +.++..|+|+|||.+|-.++..++
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred             CcEEEeCCCCCceehHHhHHHHhc
Confidence            567889999999999877776543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.65  E-value=0.0017  Score=56.61  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=24.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ....++|+|||+||||+++.+|.+.++.
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            3457889999999999999999988753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00056  Score=56.50  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .+|+|+||||+|||++++.+++...
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            4689999999999999999988754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.40  E-value=0.0069  Score=52.61  Aligned_cols=106  Identities=15%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc-cc---ccCC-----------chhHHHH----HHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-GE---FVGH-----------TGPKTRR----RIK  266 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~-~~---~~g~-----------~~~~~~~----~~~  266 (445)
                      ..-..|+||||||||++|-.++......+.    .++.++...-. ..   -+|-           +.....+    +++
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aqk~g~----~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~  132 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQKAGG----TCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR  132 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTC----CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHhCCC----EEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHh
Confidence            335779999999999999998888776542    55555544311 11   0111           1222222    333


Q ss_pred             HccCcEEEEcCccccccCCCCCC----c--hhHH----HHHHHHHhhccCCcEEEEEec
Q 013316          267 EAEGGILFVDEAYRLIPMQKADD----K--DYGI----EALEEIMSVMDGGKVVVIFAG  315 (445)
Q Consensus       267 ~a~~~il~lDEid~l~~~~~~~~----~--~~~~----~~~~~ll~~~~~~~~~~i~a~  315 (445)
                      +....++++|=+-.+.++..-+.    .  ....    ..+..|...+...++.+|+++
T Consensus       133 ~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tN  191 (268)
T d1xp8a1         133 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN  191 (268)
T ss_dssp             TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             cCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEe
Confidence            34568999999999887444211    1  1122    333344444556667777664

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.36  E-value=0.026  Score=46.28  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=18.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      +.|+.+|+|+|||.++-.++...
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~~~   47 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAEYR   47 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHHHH
Confidence            58899999999998777665543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.31  E-value=0.0033  Score=50.41  Aligned_cols=27  Identities=19%  Similarity=0.121  Sum_probs=23.6

Q ss_pred             eEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          209 MAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      +-+.|++|+||||++..+...+...+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~~g~   30 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVREGW   30 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            458999999999999999999987553

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0038  Score=54.17  Aligned_cols=74  Identities=16%  Similarity=0.172  Sum_probs=45.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc-cc---ccCC-----------chhHH----HHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-GE---FVGH-----------TGPKT----RRRIK  266 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~-~~---~~g~-----------~~~~~----~~~~~  266 (445)
                      ..-..|+||||+|||++|-.++......+.    .++.++...-. ..   -.|-           +....    ..+.+
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~----~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~  129 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR  129 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCC----EEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHh
Confidence            345779999999999999888888776543    45555544311 10   0111           12222    22333


Q ss_pred             HccCcEEEEcCcccccc
Q 013316          267 EAEGGILFVDEAYRLIP  283 (445)
Q Consensus       267 ~a~~~il~lDEid~l~~  283 (445)
                      +....++++|=+-.+.+
T Consensus       130 ~~~~~liViDSi~al~~  146 (263)
T d1u94a1         130 SGAVDVIVVDSVAALTP  146 (263)
T ss_dssp             HTCCSEEEEECGGGCCC
T ss_pred             cCCCCEEEEECcccccc
Confidence            44568999999988875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.21  E-value=0.0025  Score=55.04  Aligned_cols=27  Identities=26%  Similarity=0.575  Sum_probs=22.5

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+...+.+.||+|+||||+++.|...+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            345578899999999999999987644

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.004  Score=51.93  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=20.3

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      -++|.||+|+|||++.+.+.+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57889999999999999988764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.15  E-value=0.0012  Score=52.39  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=28.1

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  241 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~  241 (445)
                      -|+|.|+=|+|||+++|.+++.++....+.+..|
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF   68 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY   68 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTT
T ss_pred             EEEEecCCCccHHHHHHHHHhhcccccccCCCce
Confidence            5778999999999999999999987655555544

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.13  E-value=0.032  Score=51.40  Aligned_cols=28  Identities=18%  Similarity=0.076  Sum_probs=23.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +..-+||+||+|+||||+..++-..+..
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            4456889999999999999988887754

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.071  Score=43.95  Aligned_cols=58  Identities=17%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             chhHHHHHHHHcc-----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-cEEEEEecCchhHH
Q 013316          257 TGPKTRRRIKEAE-----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMK  321 (445)
Q Consensus       257 ~~~~~~~~~~~a~-----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~a~~~~~~~  321 (445)
                      ++..+.+.++...     =..|++||+|.+..      .++. ..+..++..+... ++++..||-+....
T Consensus       126 TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~------~~f~-~~v~~I~~~l~~~~Q~il~SATl~~~v~  189 (206)
T d1s2ma1         126 TPGRVLDLASRKVADLSDCSLFIMDEADKMLS------RDFK-TIIEQILSFLPPTHQSLLFSATFPLTVK  189 (206)
T ss_dssp             CHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS------HHHH-HHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred             CCcccccccccceeecccceEEEeechhhhhh------hhhH-HHHHHHHHhCCCCCEEEEEEEeCCHHHH
Confidence            4445555554321     15789999999985      2222 4456677777654 45555555444443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.09  E-value=0.018  Score=48.37  Aligned_cols=107  Identities=16%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH--cCCCCCCCeEEeeccc-cccc------------ccCCchhHHHHHHHHc-cCc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM--VGILPTDRVTEVQRTD-LVGE------------FVGHTGPKTRRRIKEA-EGG  271 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~--~~~~~~~~~~~~~~~~-l~~~------------~~g~~~~~~~~~~~~a-~~~  271 (445)
                      .++++||...|||++.|.++-..-.  .+.........+..-+ +...            .|...-..+..+++.+ ..+
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~~~~s  116 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENS  116 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTE
T ss_pred             EEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccCCccHHHHhHHHHHHHhccCCCCc
Confidence            5889999999999999988876532  2221111112222111 1110            1111224556677765 458


Q ss_pred             EEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhH
Q 013316          272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM  320 (445)
Q Consensus       272 il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~  320 (445)
                      +++|||+-+=..      ...+..+...+++.+.+.+..++++|.-.+.
T Consensus       117 LvliDE~~~gT~------~~eg~ala~aile~L~~~~~~~i~tTH~~eL  159 (224)
T d1ewqa2         117 LVLLDEVGRGTS------SLDGVAIATAVAEALHERRAYTLFATHYFEL  159 (224)
T ss_dssp             EEEEESTTTTSC------HHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred             EEeecccccCcc------hhhhcchHHHHHHHHhhcCcceEEeeechhh
Confidence            999999922211      2222233334444444434455666655444

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0049  Score=54.62  Aligned_cols=29  Identities=34%  Similarity=0.482  Sum_probs=24.6

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      +.|--|-+.|++|+||||+|+.|...+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~  106 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSR  106 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhh
Confidence            44556668999999999999999999864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.00  E-value=0.0016  Score=53.30  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .-++|.||||+||||+++.+.+...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3578999999999999999987653

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.029  Score=46.91  Aligned_cols=58  Identities=14%  Similarity=0.228  Sum_probs=35.1

Q ss_pred             chhHHHHHHHHcc-----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          257 TGPKTRRRIKEAE-----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       257 ~~~~~~~~~~~a~-----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      ++..+.+.+....     =..|++||+|.+...      ++. ..+..+++.+.. .++++..||-+....
T Consensus       138 TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~------~f~-~~~~~Il~~~~~~~Q~il~SAT~~~~v~  201 (218)
T d2g9na1         138 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR------GFK-DQIYDIFQKLNSNTQVVLLSATMPSDVL  201 (218)
T ss_dssp             CHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT------TCH-HHHHHHHHHSCTTCEEEEEESCCCHHHH
T ss_pred             CChhHHHHHhcCCcccccceEEEeeecchhhcC------chH-HHHHHHHHhCCCCCeEEEEEecCCHHHH
Confidence            5566666665432     168999999999863      222 344566666654 445555666555444

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.93  E-value=0.0081  Score=50.82  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=19.6

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      +..-++|+|+||+|||++|-.++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            455688999999999999976554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.93  E-value=0.0054  Score=53.25  Aligned_cols=75  Identities=23%  Similarity=0.289  Sum_probs=45.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-ccccc---cC-----------CchhHHHH----HH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-LVGEF---VG-----------HTGPKTRR----RI  265 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~-l~~~~---~g-----------~~~~~~~~----~~  265 (445)
                      ...-..|+||||||||++|-.++......+.    .++.++... +..++   +|           .+.....+    ++
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~----~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~  134 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGG----VAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI  134 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTC----EEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCC----EEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            3445779999999999999877777665443    455555443 11111   01           12222222    22


Q ss_pred             HHccCcEEEEcCcccccc
Q 013316          266 KEAEGGILFVDEAYRLIP  283 (445)
Q Consensus       266 ~~a~~~il~lDEid~l~~  283 (445)
                      ++....+|++|=+-.+.+
T Consensus       135 ~~~~~~liIiDSi~al~~  152 (269)
T d1mo6a1         135 RSGALDIVVIDSVAALVP  152 (269)
T ss_dssp             HTTCEEEEEEECSTTCCC
T ss_pred             hcCCCCEEEEeccccccc
Confidence            333458999999998886

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.027  Score=48.73  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      .-.+|+|+||+|||+++-.+|..+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4577999999999999999887654

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.054  Score=44.77  Aligned_cols=44  Identities=16%  Similarity=0.397  Sum_probs=28.1

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      ..|++||+|.+....      +. +.+..++..+.. .++++..||-+....
T Consensus       148 ~~lVlDEaD~ll~~~------f~-~~i~~I~~~~~~~~Q~~l~SAT~~~~v~  192 (206)
T d1veca_         148 QMIVLDEADKLLSQD------FV-QIMEDIILTLPKNRQILLYSATFPLSVQ  192 (206)
T ss_dssp             CEEEEETHHHHTSTT------TH-HHHHHHHHHSCTTCEEEEEESCCCHHHH
T ss_pred             ceEEEeccccccccc------hH-HHHHHHHHhCCCCCEEEEEEecCCHHHH
Confidence            589999999998632      22 345666666644 455666666554444

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0018  Score=54.48  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=23.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMV  233 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~  233 (445)
                      --|-+.||+|+||||+|+.|++.++..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            345589999999999999999998653

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.065  Score=45.02  Aligned_cols=28  Identities=29%  Similarity=0.157  Sum_probs=22.3

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...+...||+|.+|+|||.++-..+...
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~~~  100 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAFLA  100 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence            4567889999999999999886555443

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0029  Score=51.57  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..++|.||+|+||+++++.+.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            469999999999999999888654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.60  E-value=0.0026  Score=57.13  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..+++++||+|+||||+.+++...+.
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            45899999999999999999987664

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.059  Score=45.08  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      ..|+|||+|.+....      +. .-+..++..+.. .+.+++.||-+....
T Consensus       161 ~~lVlDEaD~ll~~~------f~-~~i~~I~~~l~~~~Q~ilfSAT~~~~v~  205 (222)
T d2j0sa1         161 KMLVLDEADEMLNKG------FK-EQIYDVYRYLPPATQVVLISATLPHEIL  205 (222)
T ss_dssp             CEEEEETHHHHTSTT------TH-HHHHHHHTTSCTTCEEEEEESCCCHHHH
T ss_pred             eeeeecchhHhhhcC------cH-HHHHHHHHhCCCCCEEEEEEEeCCHHHH
Confidence            589999999998632      22 345566666654 456666677665544

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.094  Score=43.23  Aligned_cols=46  Identities=15%  Similarity=0.213  Sum_probs=28.2

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHHH
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKR  322 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~~  322 (445)
                      ..+++||+|.+....      .....+..++..+.. .+++++.||-+.....
T Consensus       147 ~~lVlDEaD~ll~~~------~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~  193 (207)
T d1t6na_         147 KHFILDECDKMLEQL------DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRP  193 (207)
T ss_dssp             CEEEEESHHHHHSSH------HHHHHHHHHHHTSCSSSEEEEEESCCCTTTHH
T ss_pred             ceeehhhhhhhhhcC------CcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHH
Confidence            589999999998521      122345566666644 4566666765554443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.011  Score=49.24  Aligned_cols=28  Identities=25%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      -|.|.|+.|+||||.++.|++.+...+.
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~~L~~~g~   32 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVEALCAAGH   32 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            4677899999999999999999987554

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.15  E-value=0.027  Score=47.77  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..+++.+|+|+|||+++-..+...
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~~~~   82 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMSLFL   82 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHHHH
Confidence            479999999999998776555444

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0033  Score=53.74  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=20.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      +...++|+||||||||++|-.++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3447899999999999999877643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.14  E-value=0.0065  Score=53.80  Aligned_cols=41  Identities=24%  Similarity=0.326  Sum_probs=26.0

Q ss_pred             CCeeEeecCCCCchhHH-HHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          206 PPHMAFLGNPGTGKTMV-ARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~-A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      ..++++.|+||||||++ +..++..+...+. ....+..++.+
T Consensus        14 ~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~-~~~~ILvlt~t   55 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFT   55 (306)
T ss_dssp             SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESS
T ss_pred             CCCEEEEeeCCccHHHHHHHHHHHHHHhcCC-ChhHEEEEeCc
Confidence            45789999999999964 5666666654222 22244444444

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0054  Score=51.23  Aligned_cols=27  Identities=22%  Similarity=0.218  Sum_probs=22.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      +..-++|+||||+|||++|-.++....
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344688999999999999988876543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.01  E-value=0.0053  Score=52.67  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..-++++||||||||++|-.++...
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3358899999999999998887654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.00  E-value=0.01  Score=52.84  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=26.2

Q ss_pred             CCeeEeecCCCCchhHH-HHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          206 PPHMAFLGNPGTGKTMV-ARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~-A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ..++++.|+||||||++ +..+++.+.. +......+..+..+.
T Consensus        24 ~g~~lV~g~aGSGKTt~l~~ri~~ll~~-~~~~p~~il~lt~t~   66 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLTHRIAYLMAE-KHVAPWNILAITFTN   66 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHHHHHHHT-TCCCGGGEEEEESSH
T ss_pred             CCCEEEEecCCccHHHHHHHHHHHHHHc-CCCCHHHeEeEeccH
Confidence            45799999999999964 4566666653 222223455555443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0077  Score=50.28  Aligned_cols=29  Identities=28%  Similarity=0.383  Sum_probs=25.1

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      .-|+|.|+.|+||||.++.|++.+...+.
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~   31 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGI   31 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence            35788999999999999999999987553

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.99  E-value=0.071  Score=43.94  Aligned_cols=58  Identities=28%  Similarity=0.324  Sum_probs=33.1

Q ss_pred             chhHHHHHHHHcc-----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          257 TGPKTRRRIKEAE-----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       257 ~~~~~~~~~~~a~-----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      ++..+...+....     =..+++||+|.+....      +. ..+..++..+.. .++++..||-+....
T Consensus       130 TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~------f~-~~v~~I~~~~~~~~Q~il~SATl~~~v~  193 (209)
T d1q0ua_         130 TPGRINDFIREQALDVHTAHILVVDEADLMLDMG------FI-TDVDQIAARMPKDLQMLVFSATIPEKLK  193 (209)
T ss_dssp             CHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT------CH-HHHHHHHHTSCTTCEEEEEESCCCGGGH
T ss_pred             cCchhhhhhhhhccccccceEEEEeecccccccc------cH-HHHHHHHHHCCCCCEEEEEEccCCHHHH
Confidence            4444555554432     1688999999998632      22 334566666643 455555666544433

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.99  E-value=0.013  Score=48.66  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.3

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      -|.|.|+.|+||||+++.|++.+...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~   29 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR   29 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            3678999999999999999999977554

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.88  E-value=0.082  Score=45.32  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=22.7

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...+..-||.|..|+|||.+|-..+...
T Consensus       101 ~~~~m~rLL~GdvGSGKT~Va~~a~~~~  128 (264)
T d1gm5a3         101 SEKPMNRLLQGDVGSGKTVVAQLAILDN  128 (264)
T ss_dssp             SSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred             ccCcceeeeeccccccccHHHHHHHHHH
Confidence            4577889999999999999886665544

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0068  Score=51.99  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=21.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...++|+||||||||++|-.++...
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3368899999999999999888754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.85  E-value=0.012  Score=51.35  Aligned_cols=38  Identities=13%  Similarity=0.414  Sum_probs=26.1

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  249 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l  249 (445)
                      -|-+.|++|+||||+++++.+.+...+.    ....++..++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v----~~~iI~~Dsf   43 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGV----KAVSIEGDAF   43 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTC----CEEEEEGGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCC----CeEEEeCCCC
Confidence            5779999999999999999999987544    4444554444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.83  E-value=0.0069  Score=47.72  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .|+|.|+||+|||++...+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.78  E-value=0.0073  Score=49.55  Aligned_cols=22  Identities=41%  Similarity=0.653  Sum_probs=18.6

Q ss_pred             CCeeEeecCCCCchhHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la  227 (445)
                      |.-+-++|++|+||||+|+.+.
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4456689999999999999885

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.58  E-value=0.18  Score=41.55  Aligned_cols=58  Identities=17%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             chhHHHHHHHHcc-----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316          257 TGPKTRRRIKEAE-----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  321 (445)
Q Consensus       257 ~~~~~~~~~~~a~-----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~  321 (445)
                      ++..+...+....     -..+++||+|.+...      .+. +.+..++..+.. .++++..||-+....
T Consensus       134 TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~------~f~-~~v~~I~~~~~~~~Q~vl~SAT~~~~v~  197 (212)
T d1qdea_         134 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS------GFK-EQIYQIFTLLPPTTQVVLLSATMPNDVL  197 (212)
T ss_dssp             CHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT------TCH-HHHHHHHHHSCTTCEEEEEESSCCHHHH
T ss_pred             CCCccccccccCceecCcceEEeehhhhhhccc------chH-HHHHHHHHhCCCCCeEEEEEeeCCHHHH
Confidence            4444444444332     268899999999862      222 344556665644 445555565544433

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.52  E-value=0.0043  Score=51.24  Aligned_cols=29  Identities=24%  Similarity=0.280  Sum_probs=24.0

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..|.-|.|.|+.|+||||+++.|++.+..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34556889999999999999999987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.072  Score=42.22  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||+++..+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.40  E-value=0.011  Score=47.57  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=19.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..++||.|+||+|||++|-.+.+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            45899999999999999977664

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.015  Score=50.83  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|.-|-|.|++|+||||+|..|...+..
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            3444558999999999999999877643

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.047  Score=43.40  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      -.+++.|++|+|||++...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999988765

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.12  E-value=0.21  Score=41.00  Aligned_cols=42  Identities=17%  Similarity=0.345  Sum_probs=25.7

Q ss_pred             cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchh
Q 013316          271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP  319 (445)
Q Consensus       271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~  319 (445)
                      ..|++||+|.+....      +. ..+..++..+.. .+++++.||-++.
T Consensus       147 ~~lViDEad~l~~~~------~~-~~i~~I~~~~~~~~Q~i~~SAT~~~~  189 (208)
T d1hv8a1         147 KYFILDEADEMLNMG------FI-KDVEKILNACNKDKRILLFSATMPRE  189 (208)
T ss_dssp             CEEEEETHHHHHTTT------TH-HHHHHHHHTSCSSCEEEEECSSCCHH
T ss_pred             cEEEEEChHHhhcCC------Ch-HHHHHHHHhCCCCCeEEEEEccCCHH
Confidence            699999999987522      22 345666776654 3455555554443

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.12  E-value=0.013  Score=49.77  Aligned_cols=24  Identities=38%  Similarity=0.678  Sum_probs=20.9

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      -+++.||+|+||||+.+.+.+.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            378999999999999999987664

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.02  E-value=0.011  Score=47.58  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=19.8

Q ss_pred             CCeeEeecCCCCchhHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..++||.||+|+|||++|-.+..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45899999999999999977654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.99  E-value=0.013  Score=49.73  Aligned_cols=23  Identities=22%  Similarity=0.550  Sum_probs=20.3

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      -+.|.||+|+||||+.+.|+..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            45688999999999999999765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.97  E-value=0.18  Score=40.73  Aligned_cols=19  Identities=21%  Similarity=0.466  Sum_probs=17.9

Q ss_pred             eeEeecCCCCchhHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARIL  226 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~l  226 (445)
                      .|++.|.+|+|||++...+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999988

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=93.91  E-value=0.064  Score=42.52  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||++.+.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.89  E-value=0.012  Score=50.04  Aligned_cols=26  Identities=27%  Similarity=0.229  Sum_probs=21.7

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      ..-++|+||||+|||++|-.+|....
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34688999999999999999987653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.84  E-value=0.016  Score=45.88  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..|+|.|+||+|||++.+.+..
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999998854

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.017  Score=45.40  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .++|.|+||+|||++...+..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999988765

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.83  E-value=0.014  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=18.8

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|+|.|+||+|||++.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            689999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.82  E-value=0.016  Score=46.33  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=19.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ..++||.|+||+|||++|-.+.+.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            458999999999999998666543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.015  Score=46.64  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=18.3

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+++.|+||||||+++..+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999988754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.79  E-value=0.063  Score=47.68  Aligned_cols=42  Identities=31%  Similarity=0.450  Sum_probs=29.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ....+=++||||+||||+...+...+...+.  +..++.++++.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~--~vaViavDpss   91 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGH--KVAVLAVDPSS   91 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTC--CEEEEEECGGG
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCC--ceeeeeccccc
Confidence            3445669999999999999999987654332  22466666655

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.059  Score=47.97  Aligned_cols=42  Identities=26%  Similarity=0.451  Sum_probs=29.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  248 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ....|-++||||+||||+...+...+...+.  +..++.++++.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~--~vavlavDpss   94 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGL--KVAVIAVDPSS   94 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTC--CEEEEEECCC-
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCC--ceeeecCCCce
Confidence            3445779999999999999999988765432  12345555443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.039  Score=48.22  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=28.0

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI  235 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~  235 (445)
                      ...|.-++|+|.-||||||+|-.+|..+...+.
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~   37 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGK   37 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCC
Confidence            345777889999999999999999999987553

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.73  E-value=0.015  Score=49.40  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=21.8

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....+-|.||+|+||||+++.|+...
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34467799999999999999998654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.02  Score=48.32  Aligned_cols=26  Identities=27%  Similarity=0.551  Sum_probs=22.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....+-|.||+|+||||+.+.|+...
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            44567899999999999999998754

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.67  E-value=0.046  Score=47.96  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=18.5

Q ss_pred             CCCeeEeecCCCCchhHH--HHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMV--ARILGRLLY  231 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~--A~~la~~~~  231 (445)
                      ....+++.+|+|+|||+.  ...+.....
T Consensus         8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~~   36 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKRYLPAIVREAIK   36 (305)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            456789999999999952  344444443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.65  E-value=0.016  Score=48.77  Aligned_cols=25  Identities=28%  Similarity=0.607  Sum_probs=21.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ....+-|.||+|+||||+.+.|+..
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            4456889999999999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.012  Score=49.88  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ...-+-|.||+|+||||+++.|+..
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            3456789999999999999999754

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.05  Score=44.83  Aligned_cols=20  Identities=20%  Similarity=0.262  Sum_probs=16.6

Q ss_pred             CeeEeecCCCCchhHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARIL  226 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~l  226 (445)
                      .++++.-|+|+|||.++...
T Consensus        41 ~~vlv~apTGsGKT~~~~~~   60 (206)
T d1oywa2          41 RDCLVVMPTGGGKSLCYQIP   60 (206)
T ss_dssp             CCEEEECSCHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCCcchhhhh
Confidence            47999999999999877443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.03  Score=46.42  Aligned_cols=20  Identities=35%  Similarity=0.591  Sum_probs=17.2

Q ss_pred             eEeecCCCCchhHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~  228 (445)
                      |-++|++|+||||+|+.+.+
T Consensus         6 IgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            44899999999999998853

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.45  E-value=0.02  Score=47.33  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+|+|.|+||+|||++...+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            3799999999999999888865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.39  E-value=0.02  Score=45.41  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.5

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|+||+|||++...+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.02  Score=45.51  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=18.6

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|+||+|||++++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988765

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.38  E-value=0.018  Score=49.35  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=22.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+...+.|.||+|+||||+++.|...+
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            345578899999999999999998654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.37  E-value=0.024  Score=47.98  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....+-|.||+|+||||+.+.|+...
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            44568899999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.36  E-value=0.014  Score=49.20  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=22.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...-+.|.||+|+||||+.+.|+...
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34468899999999999999998754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.33  E-value=0.022  Score=47.24  Aligned_cols=19  Identities=32%  Similarity=0.641  Sum_probs=16.6

Q ss_pred             eEeecCCCCchhHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la  227 (445)
                      |-++|++|+||||+|+.+.
T Consensus         5 IgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4479999999999999885

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.31  E-value=0.016  Score=47.84  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...-+.|.||.|+||||+.+.|+..+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            34467799999999999999997644

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.017  Score=49.05  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=24.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      |.-+.|.|+-|+||||+++.|++.+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            557889999999999999999998754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.26  E-value=0.016  Score=46.66  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ....++|.|+||+|||++...+..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345799999999999999888754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.22  E-value=0.022  Score=45.46  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=18.8

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .++|.|++|+|||++...+..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998865

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.18  E-value=0.024  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      +.|+|.|+||+|||++..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.021  Score=46.29  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=17.9

Q ss_pred             eeEeecCCCCchhHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la  227 (445)
                      .|++.|+||+|||++++.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHh
Confidence            48899999999999998775

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.11  E-value=0.025  Score=44.86  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=18.6

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|+|.|++|+|||++...+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999988854

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.024  Score=45.07  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||++...+..
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.08  E-value=0.025  Score=45.14  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=19.0

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|.+.|+||+|||++.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.026  Score=48.30  Aligned_cols=27  Identities=37%  Similarity=0.546  Sum_probs=22.6

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+...+.+.||+|+||||+++.|...+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            445578899999999999999997644

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.024  Score=45.31  Aligned_cols=21  Identities=33%  Similarity=0.687  Sum_probs=18.9

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .++|.|++|+|||++.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.92  E-value=0.017  Score=49.03  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=22.7

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .....+.|.||+|+||||+.+.|+...
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            345578899999999999999998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.027  Score=47.89  Aligned_cols=27  Identities=19%  Similarity=0.598  Sum_probs=22.8

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      .+...+.+.||+|+||||+++.|...+
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345578899999999999999998755

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.027  Score=44.88  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.6

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+++.|++|+|||++.+.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999988765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.027  Score=44.78  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=18.5

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|+|.|.+|+|||++.+.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.027  Score=45.21  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.6

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+++.|++|+|||+++..+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.75  E-value=0.043  Score=45.67  Aligned_cols=27  Identities=30%  Similarity=0.191  Sum_probs=23.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..-|.|.|+-|+||||.++.|++.+..
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            346889999999999999999998764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.73  E-value=0.023  Score=48.36  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=22.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      +...+.+.||+|+||||+++.|...+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34467899999999999999998765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.71  E-value=0.027  Score=45.06  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ....|+|.|.||+|||++...+..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            345799999999999999988754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.69  E-value=0.022  Score=48.96  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ....+-|.||+|+||||++++|+..
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            4456789999999999999999754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.07  Score=46.24  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=24.9

Q ss_pred             CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          204 RRPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .....+++.|++|||||+++..+++....
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            44568999999999999999999987754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.65  E-value=0.033  Score=44.53  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=19.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la  227 (445)
                      ....+++.|+||+|||++...+.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh
Confidence            34479999999999999998773

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.029  Score=44.77  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|+|.|.||+|||++.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.61  E-value=0.032  Score=48.59  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=23.4

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ..+...+.|.||+|+||||+.+.|+..+
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3455678899999999999999998765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.52  E-value=0.03  Score=44.39  Aligned_cols=21  Identities=19%  Similarity=0.449  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+++.|+||+|||++.+.+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.50  E-value=0.032  Score=44.07  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.6

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||++...+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.031  Score=44.33  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.5

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||++...+..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=0.033  Score=44.52  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.5

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+++.|+||+|||++...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            488999999999999988754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.032  Score=44.65  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|.+|+|||++.+.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            699999999999999987764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.35  E-value=0.037  Score=45.13  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.2

Q ss_pred             CCeeEeecCCCCchhHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      -+.|.|.|+||+||||+..+|..
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHhcC
Confidence            34699999999999999999974

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.033  Score=44.37  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=18.0

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||++...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999887754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.033  Score=43.99  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.4

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|.+|+|||++.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.034  Score=44.26  Aligned_cols=22  Identities=45%  Similarity=0.915  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .|++.|++|+|||++++.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3789999999999999887643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.24  E-value=0.036  Score=44.78  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.5

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|.+|||||+++..+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.036  Score=44.14  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+++.|++|+|||++++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.034  Score=44.07  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..|++.|++|+|||++...+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999988754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.035  Score=44.36  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.4

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|.||+|||+++..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.12  E-value=0.032  Score=44.93  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|+|.|+||+|||++..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999854

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.039  Score=43.78  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|.+|+|||++.+.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.02  E-value=0.04  Score=43.67  Aligned_cols=21  Identities=24%  Similarity=0.503  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|.+|+|||++.+.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999988764

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.01  E-value=0.089  Score=45.74  Aligned_cols=25  Identities=12%  Similarity=0.252  Sum_probs=19.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..++.-|+|+|||.+|-.++..+..
T Consensus       130 ~~il~~pTGsGKT~i~~~i~~~~~~  154 (282)
T d1rifa_         130 RRILNLPTSAGRSLIQALLARYYLE  154 (282)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CceeEEEcccCccHHHHHHHHHhhh
Confidence            4566679999999998888766543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.013  Score=49.85  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=22.0

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      -|.|.|+.|+||||+++.|++.+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5789999999999999999987643

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.039  Score=44.24  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||++...+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999987765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.038  Score=43.38  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=18.7

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|+|.|+||+|||++..++..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999988864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.044  Score=43.79  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=18.6

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|+|.|+||+|||++...+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999977764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.041  Score=43.92  Aligned_cols=21  Identities=29%  Similarity=0.662  Sum_probs=18.3

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|+|.|++|+|||++...+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.79  E-value=0.054  Score=46.50  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+..|+|.|.||+|||++..+|..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Confidence            456899999999999999998864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=91.76  E-value=0.027  Score=45.07  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la  227 (445)
                      ...|++.|+||+|||++.+.+.
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999998875

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.75  E-value=0.058  Score=46.66  Aligned_cols=26  Identities=15%  Similarity=0.141  Sum_probs=21.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      +..-++|.|+||+|||+++..++..+
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            34468899999999999999888654

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=91.70  E-value=0.35  Score=40.54  Aligned_cols=15  Identities=27%  Similarity=0.412  Sum_probs=13.8

Q ss_pred             CeeEeecCCCCchhH
Q 013316          207 PHMAFLGNPGTGKTM  221 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~  221 (445)
                      .++++..|+|||||+
T Consensus        59 ~dvvi~a~TGsGKTl   73 (238)
T d1wrba1          59 RDIMACAQTGSGKTA   73 (238)
T ss_dssp             CCEEEECCTTSSHHH
T ss_pred             CCEEEECCCCCCcce
Confidence            479999999999996

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.65  E-value=0.032  Score=44.99  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la  227 (445)
                      ......++|.|+||+|||++.+.+.
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHh
Confidence            3445689999999999999998763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=0.047  Score=43.73  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..+++.|++|+|||++.+.+..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.52  E-value=0.045  Score=44.67  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=18.5

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||++...+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            488999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.50  E-value=0.046  Score=44.00  Aligned_cols=21  Identities=19%  Similarity=0.539  Sum_probs=18.5

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .++|.|++|+|||++.+.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.47  E-value=0.049  Score=43.25  Aligned_cols=21  Identities=19%  Similarity=0.395  Sum_probs=18.1

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+++.|++|+|||++...+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999887654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.075  Score=49.22  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=26.4

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      ..|+++.|+||+|||++++.+...+-..+.    +++.++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~----~~iiiD~   86 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRGD----RMVIVDP   86 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTC----EEEEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHHhCCC----CEEEEeC
Confidence            458999999999999988776655544332    5555544

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.21  E-value=0.031  Score=44.96  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=21.1

Q ss_pred             CCCCCeeEeecCCCCchhHHHHHHH
Q 013316          203 ARRPPHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       203 ~~~~~~vll~Gp~GtGKt~~A~~la  227 (445)
                      ......|.|.|+|++|||++.++|.
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHh
Confidence            3456679999999999999998874

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.10  E-value=0.042  Score=46.52  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             eEeecCCCCchhHHHHHHHHHH
Q 013316          209 MAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       209 vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      |-|+|+.|+||||+|+.++...
T Consensus         4 IgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5689999999999999998753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.047  Score=44.05  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.0

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..+++.|.+|+|||++.+.+..
T Consensus         6 iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999987764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.99  E-value=0.055  Score=43.36  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..|.|.|.||+|||++.+++..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.056  Score=43.91  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.3

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|++|+|||++.+.+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999877754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.88  E-value=0.035  Score=44.41  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=9.0

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|.+|||||++.+.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=90.85  E-value=0.046  Score=46.33  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=21.3

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...-+-|.||.|+||||+.+.|+..+
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34467799999999999999997543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.059  Score=43.54  Aligned_cols=21  Identities=19%  Similarity=0.298  Sum_probs=18.5

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|++.|.+|+|||++.+.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            588999999999999988764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.73  E-value=0.065  Score=44.68  Aligned_cols=21  Identities=19%  Similarity=0.329  Sum_probs=18.6

Q ss_pred             CeeEeecCCCCchhHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la  227 (445)
                      ...+|.|+||+|||++..+|.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHhhc
Confidence            467899999999999998885

>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase domain of protease Lon (La)
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.16  Score=35.83  Aligned_cols=87  Identities=15%  Similarity=0.052  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHHHHHhcccccccccccc-cCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCC
Q 013316          342 DFNSEELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL  420 (445)
Q Consensus       342 ~~~~~~~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~  420 (445)
                      .|+.+|-.+|.+.||-...  +...++. -...++++++..++..++    +.+| +|.|+..++..+|..+....... 
T Consensus         2 GYt~~EK~~Iak~yLiPk~--l~~~gl~~~~i~i~~~~l~~iI~~Yt----rEaG-VR~Ler~i~~I~Rk~a~~~~~~~-   73 (94)
T d1qzma_           2 GYTEDEKLNIAKRHLLPKQ--IERNALKKGELTVDDSAIIGIIRYYT----REAG-VRGLEREISKLCRKAVKQLLLDK-   73 (94)
T ss_dssp             CCCHHHHHHHHHHTHHHHH--HHHTTCCTTTEEECHHHHHHHHHHHC----CCSS-SHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred             CCCHHHHHHHHHHHhHHHH--HHHhccccccccchHHHHHHHHHHHc----cHHH-HHHHHHHHHHHHHHHHHHHHhCC-
Confidence            5889999999998873221  1112221 134677889999998876    5677 99999999999998877653322 


Q ss_pred             ChhhhhhccHHHHHHHH
Q 013316          421 DTDELRTITLEDLEAGL  437 (445)
Q Consensus       421 ~~~~~~~i~~~d~~~a~  437 (445)
                       ......|+.+++.+.+
T Consensus        74 -~~~~~~i~~~~l~~~L   89 (94)
T d1qzma_          74 -SLKHIEINGDNLHDYL   89 (94)
T ss_dssp             -TCCCEEECTTTTHHHH
T ss_pred             -CCCCeeeCHHHHHHHc
Confidence             1234578888887655

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.042  Score=43.77  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=17.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .|++.|++|+|||++...+...
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999998876543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.34  E-value=1.2  Score=35.26  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             eeEeecCCCCchhHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .+++.|.+|+|||++.+.+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988544

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.25  E-value=0.15  Score=43.95  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=28.2

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      .-++++|.-|+||||+|-.+|..+...+.    .+..+++.
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~----rVllvD~D   57 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLADMGF----DVHLTTSD   57 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEESC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCC----cEEEEeCC
Confidence            34667899999999999999999887543    45555544

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.19  E-value=0.052  Score=43.53  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.6

Q ss_pred             eeEeecCCCCchhHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .|.|.|.||+|||++..+|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999998853

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.18  E-value=0.27  Score=42.03  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ++|.+.|..|+||||++.++-...
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHc
Confidence            478899999999999999996544

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.066  Score=42.70  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.5

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..|.|.|.||+|||++..+|..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3588999999999999999964

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.85  E-value=0.063  Score=45.91  Aligned_cols=26  Identities=19%  Similarity=0.451  Sum_probs=21.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ...-+-|.||.|+||||+++.|+..+
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            34467799999999999999997653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.83  E-value=0.34  Score=40.06  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ..|++.|++|+|||++.+.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.069  Score=44.92  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=20.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ...-+-|.||.|+||||+.+.|+.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            344677899999999999999975

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.69  E-value=0.49  Score=39.21  Aligned_cols=43  Identities=12%  Similarity=-0.011  Sum_probs=27.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  250 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~  250 (445)
                      ..+.+|.=++|+|||..|-++...+......  .++.-+.+..+.
T Consensus        31 ~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~--~~~LIv~p~~l~   73 (230)
T d1z63a1          31 GFGICLADDMGLGKTLQTIAVFSDAKKENEL--TPSLVICPLSVL   73 (230)
T ss_dssp             TCCEEECCCTTSCHHHHHHHHHHHHHHTTCC--SSEEEEECSTTH
T ss_pred             CCCEEEEeCCCCChHHHHHHhhhhhhhcccc--cccceecchhhh
Confidence            3467777799999999988777766543321  134444444443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.68  E-value=0.039  Score=43.28  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.4

Q ss_pred             eeEeecCCCCchhHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      .|.|.|.||+|||++..++...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=89.47  E-value=0.092  Score=44.32  Aligned_cols=26  Identities=31%  Similarity=0.565  Sum_probs=21.4

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      +..-+-|.||.|+||||+.+.|+..+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34456699999999999999998754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.33  E-value=0.07  Score=42.93  Aligned_cols=20  Identities=20%  Similarity=0.571  Sum_probs=17.9

Q ss_pred             eeEeecCCCCchhHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la  227 (445)
                      .|-|.|+|++|||++..+|.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSE
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            57899999999999998874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.20  E-value=0.04  Score=44.91  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLY  231 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~  231 (445)
                      -.+|+||.|+|||++..+|.-.+.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            467899999999999999997764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=0.19  Score=41.31  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=27.2

Q ss_pred             eeEeecC-CCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316          208 HMAFLGN-PGTGKTMVARILGRLLYMVGILPTDRVTEVQ  245 (445)
Q Consensus       208 ~vll~Gp-~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~  245 (445)
                      .++++|- +|+|||+++-.||..+...+.    .+..++
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~----rVl~id   37 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGY----RTAGYK   37 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTC----CEEEEC
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCC----eEEEEC
Confidence            5778898 699999999999999988664    444444

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.04  E-value=1.2  Score=33.56  Aligned_cols=21  Identities=38%  Similarity=0.311  Sum_probs=16.5

Q ss_pred             EeecCCCCchhH-HHHHHHHHH
Q 013316          210 AFLGNPGTGKTM-VARILGRLL  230 (445)
Q Consensus       210 ll~Gp~GtGKt~-~A~~la~~~  230 (445)
                      +++||-.+|||+ +.+.+....
T Consensus         6 ~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHHHH
Confidence            578999999998 677765544

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.76  E-value=0.1  Score=41.86  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             CCeeEeecCCCCchhHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      ...|.|.|.+|+|||++..++..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            45789999999999999988864

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.47  E-value=1.4  Score=33.27  Aligned_cols=20  Identities=25%  Similarity=0.280  Sum_probs=14.3

Q ss_pred             eEeecCCCCchhHHH-HHHHH
Q 013316          209 MAFLGNPGTGKTMVA-RILGR  228 (445)
Q Consensus       209 vll~Gp~GtGKt~~A-~~la~  228 (445)
                      =+++||-.+|||+-. |.+..
T Consensus        10 ~lI~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1          10 EVIVGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeccccHHHHHHHHHHHH
Confidence            456899999999744 44433

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=1.2  Score=33.30  Aligned_cols=20  Identities=30%  Similarity=0.328  Sum_probs=14.0

Q ss_pred             eEeecCCCCchhHH-HHHHHH
Q 013316          209 MAFLGNPGTGKTMV-ARILGR  228 (445)
Q Consensus       209 vll~Gp~GtGKt~~-A~~la~  228 (445)
                      -+++||-.+|||+- .+.+..
T Consensus         5 ~li~GpMfsGKTt~Li~~~~~   25 (133)
T d1xbta1           5 QVILGPMFSGKSTELMRRVRR   25 (133)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEecccCHHHHHHHHHHHH
Confidence            35789999999974 444443

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.15  E-value=0.14  Score=40.86  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.0

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      ...|++.|++|+|||++...+...
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhC
Confidence            347999999999999999877553

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.08  E-value=0.08  Score=46.35  Aligned_cols=17  Identities=41%  Similarity=0.655  Sum_probs=14.8

Q ss_pred             CeeEeecCCCCchhHHH
Q 013316          207 PHMAFLGNPGTGKTMVA  223 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A  223 (445)
                      ...||+|.+||||||+.
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            45799999999999975

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.03  E-value=1.6  Score=35.27  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=22.3

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .-+|.+.|-+++||||++.+|-..++.
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~   29 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAA   29 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhh
Confidence            357899999999999999999665543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.96  E-value=0.084  Score=46.94  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=22.8

Q ss_pred             CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ..|.|-|+-|+||||+++.+++.+..
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            35788999999999999999998764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.77  E-value=0.06  Score=45.07  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=19.5

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....+|.|+||+|||++..+|....
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             cceEEEECCCCccHHHHHHhhccHh
Confidence            3467789999999999999886443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.95  E-value=0.11  Score=45.19  Aligned_cols=17  Identities=41%  Similarity=0.655  Sum_probs=14.7

Q ss_pred             CeeEeecCCCCchhHHH
Q 013316          207 PHMAFLGNPGTGKTMVA  223 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A  223 (445)
                      ..-||+|.+||||||+.
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            35689999999999976

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.44  E-value=0.33  Score=41.42  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=28.6

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  247 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~  247 (445)
                      .|.|+|.=||||||+|-.+|..+...+.    .+.-+++.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~----rVllID~D   38 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGK----TIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTC----CEEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCC----cEEEEecC
Confidence            4668999999999999999999987554    56566654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.88  E-value=0.86  Score=38.92  Aligned_cols=27  Identities=11%  Similarity=0.009  Sum_probs=23.1

Q ss_pred             CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          206 PPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       206 ~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .++|-+.|..|+|||+++.++....+.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            458999999999999999999776643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.58  E-value=2.1  Score=36.22  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      ....++++|++|||||+++.-++...
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            44579999999999999998888764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.55  E-value=0.46  Score=43.24  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      .+.+|.+.|.||+|||++..+|-.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            467899999999999999998853

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=85.30  E-value=0.15  Score=45.20  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      -|.|-|+-|+||||+++.+++.+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4778999999999999999998764

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.22  E-value=0.16  Score=44.44  Aligned_cols=17  Identities=41%  Similarity=0.657  Sum_probs=15.0

Q ss_pred             CeeEeecCCCCchhHHH
Q 013316          207 PHMAFLGNPGTGKTMVA  223 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A  223 (445)
                      ...||+|-+||||||+.
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            35789999999999987

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=85.01  E-value=1  Score=38.90  Aligned_cols=49  Identities=22%  Similarity=0.167  Sum_probs=28.5

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---CCCCeEEeecccccccc
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVTEVQRTDLVGEF  253 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---~~~~~~~~~~~~l~~~~  253 (445)
                      ...+.+|.=+.|+|||..|-++...+......   ...+++-+.+..+...|
T Consensus        78 ~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW  129 (298)
T d1z3ix2          78 NSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNW  129 (298)
T ss_dssp             TCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHH
T ss_pred             cCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHH
Confidence            45678888899999998765544444332211   11245555555555443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.79  E-value=0.46  Score=40.98  Aligned_cols=35  Identities=29%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|.++|.=||||||+|-.+|..+...+.    .+.-+++
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~----rVLlID~   38 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGK----KVMIVGC   38 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTC----CEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCC----CEEEEec
Confidence            4667999999999999999998887554    5555554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=84.70  E-value=0.15  Score=45.18  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=19.3

Q ss_pred             eeEeecCCCCchhHHHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      .|.|-|+-|+||||+++.+++.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4778899999999999999987754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.13  E-value=0.21  Score=41.57  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=18.5

Q ss_pred             CeeEeecCCCCchhHHHHHHHH
Q 013316          207 PHMAFLGNPGTGKTMVARILGR  228 (445)
Q Consensus       207 ~~vll~Gp~GtGKt~~A~~la~  228 (445)
                      +-.+++|..|+||||+.+.+.+
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHH
T ss_pred             CEEEEeeCCCCCHHHHHHHHHh
Confidence            3577899999999999887765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.12  E-value=0.57  Score=38.61  Aligned_cols=34  Identities=38%  Similarity=0.481  Sum_probs=25.5

Q ss_pred             eEe-ecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          209 MAF-LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       209 vll-~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      |.| .|..|+||||+|..+|..+...+.    .+.-+++
T Consensus         4 Iav~s~KGGvGKTtia~nlA~~la~~g~----~VlliD~   38 (232)
T d1hyqa_           4 ITVASGKGGTGKTTITANLGVALAQLGH----DVTIVDA   38 (232)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHHHTTC----CEEEEEC
T ss_pred             EEEECCCCCChHHHHHHHHHHHHHhCCC----CEEEEeC
Confidence            344 488999999999999999987543    5555544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.09  E-value=0.24  Score=39.60  Aligned_cols=20  Identities=20%  Similarity=0.501  Sum_probs=17.7

Q ss_pred             eeEeecCCCCchhHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILG  227 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la  227 (445)
                      .+++.|..|+|||++.+.+-
T Consensus         4 KivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999988764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.77  E-value=0.27  Score=44.88  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             eeEeecCCCCchhHHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRLL  230 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~~  230 (445)
                      --+|+||.|+|||++..||+-.+
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999997543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.58  E-value=0.37  Score=41.79  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.0

Q ss_pred             eeEeecCCCCchhHHHHHHHHH
Q 013316          208 HMAFLGNPGTGKTMVARILGRL  229 (445)
Q Consensus       208 ~vll~Gp~GtGKt~~A~~la~~  229 (445)
                      --+|+||.|+|||++..||.-.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4578999999999999999654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.74  E-value=0.45  Score=46.55  Aligned_cols=28  Identities=21%  Similarity=0.375  Sum_probs=24.0

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ....|++.|++|+|||..++.|-+.+..
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL~~  112 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFLTF  112 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999988777643

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=80.39  E-value=0.47  Score=46.60  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=23.9

Q ss_pred             CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316          205 RPPHMAFLGNPGTGKTMVARILGRLLYM  232 (445)
Q Consensus       205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~  232 (445)
                      ....|+++|++|+|||..++.+-+.+..
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL~~  151 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYLAS  151 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4668999999999999999988776643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.14  E-value=0.91  Score=37.30  Aligned_cols=34  Identities=35%  Similarity=0.414  Sum_probs=26.0

Q ss_pred             eEee-cCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316          209 MAFL-GNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  246 (445)
Q Consensus       209 vll~-Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~  246 (445)
                      |.++ +..|+||||+|-.+|..+...+.    ++.-+++
T Consensus         5 Iav~~~kGGvGKTtia~nLA~~la~~g~----~VlliD~   39 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLSVALGDRGR----KVLAVDG   39 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHHHHTTC----CEEEEEC
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhCCC----CEEEEeC
Confidence            4455 66999999999999999987553    5555554