Citrus Sinensis ID: 013318

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFYSPRS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccHcHEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mesvdsrdeeaplvadslqvltpknytrdVHILSCAFLLIFLAYGAaqnlettvntegnlgtISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANlfpswytmvpasLYLGFAASIIWVGEGTYLTAAALSHasnhklhegtvigsfngefwgmfashQFVGNLITLAVLKDDKVCAAllggstsgtTLLFIVFLGVITLGTILMCFLRkeedkgeketadASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEivtpalgvsgvggaMAVYGAFDAICSLAAgrlttglpsitfIVSGGAIAQVVVFLWILINYSvtsgvlgtLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEkafysprs
Flexible Loop (DISEMBL)
mesvdsrdeeaplvadslqvltpknYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLggstsgttLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQvekafysprs
Low Complexity Region (SEG)
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAAllggstsgttllFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFYSPRS
Disordered region (IsUnstruct)
***************DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRK**********DASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFY****
Disordered Region (DISOPRED)
*************************YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKE***************YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTI***********
Disordered Region (DISEMBL)
************LVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKE********ADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFYSPRS
Disordered Region (DISPRO)
***********************KNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE***********VNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEK*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFYSPRS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
Q94AA1	464	UNC93-like protein 3 OS=A	no	no	0.921	0.883	0.723	1e-167
Q86WB7	457	Protein unc-93 homolog A	yes	no	0.874	0.851	0.312	8e-40
Q6DDL7	460	Protein unc-93 homolog A	N/A	no	0.860	0.832	0.290	1e-37
Q710D3	458	Protein unc-93 homolog A	yes	no	0.878	0.853	0.297	2e-36
Q9Y115	538	UNC93-like protein OS=Dro	yes	no	0.919	0.760	0.275	8e-36
Q5SPF7	465	Protein unc-93 homolog A	yes	no	0.916	0.877	0.279	1e-35
Q93380	705	Putative potassium channe	yes	no	0.934	0.590	0.268	1e-33
A2VE54	457	Protein unc-93 homolog A	yes	no	0.858	0.835	0.3	1e-33
O43934	449	UNC93-like protein MFSD11	no	no	0.876	0.868	0.265	4e-21
Q8BJ51	449	UNC93-like protein MFSD11	no	no	0.842	0.835	0.266	2e-20

>sp|Q94AA1|UN933_ARATH UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1

 Score =  589 bits (1519), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/423 (72%), Positives = 348/423 (82%), Gaps = 13/423 (3%)

Query: 1   MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES +  DEEAPL++   +  +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MESRN--DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNF 237
           LA+LKD K       GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V  
Sbjct: 177 LALLKDGK------EGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGL 230

Query: 238 YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMA 297
              L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMA
Sbjct: 231 VDSLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMA 290

Query: 298 VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM 357
           VYGA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIM
Sbjct: 291 VYGALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIM 350

Query: 358 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIV 417
           AA+LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIV
Sbjct: 351 AAILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIV 410

Query: 418 MVV 420
           M+V
Sbjct: 411 MLV 413

Arabidopsis thaliana (taxid: 3702)

>sp|Q86WB7|UN93A_HUMAN Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1

 Score =  165 bits (417), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 136/435 (31%), Positives = 221/435 (50%), Gaps = 46/435 (10%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           R+V ++S  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  L++  L
Sbjct: 6   RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERL 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  +IL   GY  F   N F SWYT++P S+ LG  A+ +W  + TYLT    +HA  
Sbjct: 66  GCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV---------LKDDKV--CAA---LLG 192
                  ++  + G F+ +F S    GNLI+  V         L ++++  C A   L+ 
Sbjct: 126 AGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGASDCLMA 185

Query: 193 GSTSGTTL-----LFIVFLGVITLGTILM-----CFLRKEED-KGEKETADASVNFYSYL 241
            +T+ +T      L    LG+ T   +L       FL+   D + E E    SV F+S L
Sbjct: 186 TTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTL 245

Query: 242 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA 301
           +S  K    L  D R+ L+I L  YSGLQQ F+ +E+T+  VT  LG+  VG  M  + A
Sbjct: 246 LSTFK----LYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSA 301

Query: 302 FDAICSLAAGRLT--TGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 359
            DA+CS+  G+++  TG  ++ +++  GA+  V   + +L+ +   +  L   +  + + 
Sbjct: 302 TDALCSVLYGKVSQYTG-RAVLYVL--GAVTHVSCMIALLL-WRPRADHLAVFF--VFSG 355

Query: 360 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 419
           L G+ D V  TQ +AL G+LF+   E AFA  ++W+     + F    ++ +   L +  
Sbjct: 356 LWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYI-- 413

Query: 420 VGICVALVGILFLTI 434
                 L+G+L LT+
Sbjct: 414 ------LLGVLSLTM 422

Homo sapiens (taxid: 9606)

>sp|Q6DDL7|UN93A_XENLA Protein unc-93 homolog A OS=Xenopus laevis GN=unc93a PE=2 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 206/437 (47%), Gaps = 54/437 (12%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           +++ I+S  FLL+F A+G  Q+L++++N++  LG  SL ++Y +    S+ V  +V++ +
Sbjct: 5   KNILIVSFGFLLLFTAFGGLQSLQSSLNSDEGLGVASLSVIYAALIVSSVFVPPIVIKKI 64

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  ++     Y  +   N + SWYT++P SL LGF  + +W  + TYLT +   +A  
Sbjct: 65  GCKWTIVASMCCYITYSLGNFYASWYTLIPTSLILGFGGAPLWAAKCTYLTESGNRYAEK 124

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV------------LKDDKVCAA----- 189
                  ++  + G F+ +F S    GNLI+  +              D   C A     
Sbjct: 125 KGKLAKDIVNQYFGLFFLIFQSSGVWGNLISSLIFGQNYPAGSNDSFTDYSQCGANDCPG 184

Query: 190 -LLG---GSTSGTTLLFIVFLGVIT----LGTILMCF------LRKEEDK-GEKETADAS 234
              G   G+T  T  L    LGV T    L  IL+        LR ++ K G KE     
Sbjct: 185 TNFGNGTGTTKPTKSLIYTLLGVYTGSGVLAVILIAVFLDTINLRTDQLKPGTKEE---- 240

Query: 235 VNFYSYLVSLSKSI---TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSG 291
                   S SK I      L D R  L+IPL  YSG +Q F+  ++TK  VT +LG+  
Sbjct: 241 --------SFSKKILATVRHLKDKRQCLLIPLTMYSGFEQGFLSGDYTKSYVTCSLGIHF 292

Query: 292 VGGAMAVYGAFDAICSLAAGRLTTGLPSIT-FIVSGGAIAQVVVFLWILINYSVTSGVLG 350
           VG  M  + A +A+CSL  G+L+     I  FI++  + A  V+ L +   Y     V  
Sbjct: 293 VGYVMICFAATNAVCSLLFGQLSKYTGRICLFILAAVSNAACVIALLLWEPYPNDFAVF- 351

Query: 351 TLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS 410
                I  A+ G+ D +  TQ +AL G+LF    E AFA  ++W+     + +    ++ 
Sbjct: 352 ----FIFPAIWGMADAIWQTQTNALYGVLFDEHKEAAFANYRLWESLGFVIAYGYSTFLC 407

Query: 411 LQAMLIVMVVGICVALV 427
           +   L +++  + +A+V
Sbjct: 408 VSVKLYILLAVLLIAIV 424

Xenopus laevis (taxid: 8355)

>sp|Q710D3|UN93A_MOUSE Protein unc-93 homolog A OS=Mus musculus GN=Unc93a PE=2 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 211/430 (49%), Gaps = 39/430 (9%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           ++V ++SC FLL+F AYG  QNL++++ +E  LG  +L  LY S    S+ +  ++++  
Sbjct: 6   KNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKC 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  ++     Y +F   N   +WYT++P S+ LG  A+ +W  +GTYLT      A  
Sbjct: 66  GCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV---------LKDDKV--CAA---LLG 192
                  V+  + G F+ +F S    GNLI+  V         + ++++  C A   L+G
Sbjct: 126 VGKLGKDVVNQYFGIFFLVFQSSGVWGNLISSLVFGKMSMQEAIPEEQLMSCGAKDCLMG 185

Query: 193 GSTSGTT-----LLFIVFLGVIT----LGTILMC-FLRKEEDK--GEKETADASVNFYSY 240
            + + +T      L    LG+ T    L  +L+  FL   EDK   E E        +S 
Sbjct: 186 PAATNSTHHPSQQLIYTLLGIYTGCGVLAILLVAVFLESLEDKLENEGERRPRPPPLWST 245

Query: 241 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 300
           L+S       L  D R+ L++ L  YSG QQ F+  E+TK  VT ALG+  VG  M  + 
Sbjct: 246 LLS----TFMLFRDKRLCLLMFLPLYSGFQQEFLSGEYTKSYVTCALGIHFVGYVMICFS 301

Query: 301 AFDAICSLAAGRLTTGLPSITFIVSGGAI--AQVVVFLWILINYSVTSGVLGTLYPLIMA 358
           A  A+CSL  G+++           G AI  + +VVFL     +   +  L   +  +++
Sbjct: 302 AMTALCSLLYGKISKYTGRAALYALGAAIHFSCIVVFLL----WHPNTNQLPVFF--VLS 355

Query: 359 ALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVM 418
            L G+ D V  TQ +AL G+LF+ + E AFA  ++ +     + F    ++ +   L ++
Sbjct: 356 GLWGMSDAVWQTQNNALFGVLFEENKEPAFANYRLGEAIGFVIAFGYSSFLCVSTKLYIL 415

Query: 419 VVGICVALVG 428
           +  + +A+VG
Sbjct: 416 LGVLSLAMVG 425

Mus musculus (taxid: 10090)

>sp|Q9Y115|UN93L_DROME UNC93-like protein OS=Drosophila melanogaster GN=CG4928 PE=2 SV=1

 Score =  151 bits (382), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 211/450 (46%), Gaps = 41/450 (9%)

Query: 20  VLTPKNYTR---DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF--TC 74
           VL P    R   ++ I+S AF++ F A+    NL++++N +  LGT+SL  +Y +   +C
Sbjct: 33  VLNPGEKWRILKNISIISIAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSC 92

Query: 75  FSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGT 134
             L  +L++R L  K  L+     Y  ++A  LFP +YT+VPA + +G  A+ +W  + T
Sbjct: 93  IFL-PTLIIRKLTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKAT 151

Query: 135 YLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL------------- 181
           YLT     +A   +     +I  F G F+  + S +  GNLI+  VL             
Sbjct: 152 YLTQVGQVYAKITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSSGAHGGGSSSNT 211

Query: 182 ----KDDKVCAALLGGSTSG---------TTLLF---IVFLGVITLGT-ILMCFLRKEED 224
               +D + C A    + SG            +F   +++L  I     I+  FL   + 
Sbjct: 212 TVSEEDLQFCGANFCTTGSGGHGNLERPPEDEIFEISMIYLSCIVAAVCIIAFFLDPLKR 271

Query: 225 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT 284
            GEK     S    S L  LS +   +     + L+IP+  + G++QAF+ A+FT+  V 
Sbjct: 272 YGEKRKGSNSAAELSGLQLLSATFRQM-KKPNLQLLIPITVFIGMEQAFIGADFTQAYVA 330

Query: 285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV 344
            ALGV+ +G  M  +G  +A+CS+  G +   +     IV G     VV F  I +    
Sbjct: 331 CALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTPIIVLGA----VVHFTLITVELFW 386

Query: 345 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFF 404
                  +    M+ L G+GD V  TQ++ L G+LF+ + E AF+  ++W+ A   + + 
Sbjct: 387 RPNPDNPIIFYAMSGLWGVGDAVWQTQINGLYGLLFRRNKEAAFSNYRLWESAGFVIAYA 446

Query: 405 IGPYISLQAMLIVMVVGICVALVGILFLTI 434
               +  Q  L +++  + +  +G + + I
Sbjct: 447 YATTLCTQMKLYILLAVLTLGCIGYVIVEI 476

Drosophila melanogaster (taxid: 7227)

>sp|Q5SPF7|UN93A_DANRE Protein unc-93 homolog A OS=Danio rerio GN=unc93a PE=3 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 213/451 (47%), Gaps = 43/451 (9%)

Query: 27  TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRV 85
           T++V ++S  FLL+F AYG  Q+L++++N E  +G ISL ++Y +    S+ +  ++++ 
Sbjct: 5   TKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMIKN 64

Query: 86  LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
           LG K  +++    Y  +   NL P W +++  S  LG   S +W  + TYLT +      
Sbjct: 65  LGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQGQ 124

Query: 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---------VCA-------- 188
            H      +I  + G F+ +F S    GNL++  +   D+          C         
Sbjct: 125 KHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSLIFGQDQNIVPKENLEFCGVSTCLDNF 184

Query: 189 ALLGGSTSGTTLLFIVFLGV-ITLGTILMCF-------LRKEEDKGEKETADASVNFYSY 240
            ++G ST  +  L    LG  I +G + + F       + ++E K E  +   + +F+  
Sbjct: 185 TVIGNSTRPSKHLVDTLLGCYIGVGLLAIIFVAVFLDNIDRDEAK-EFRSTKGNKSFWDT 243

Query: 241 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 300
            ++  K +       R+LL+IPL  YSG +Q+F+  E+TK  VT ALG+  VG  M  + 
Sbjct: 244 FLATFKLLRD----PRLLLLIPLTMYSGFEQSFLSGEYTKNYVTCALGIHNVGFVMICFA 299

Query: 301 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL 360
           A +++CS A GRL      I       AI  +  FL +L  +      L   +  +  AL
Sbjct: 300 ASNSLCSFAFGRLAQYTGRIALFCLAAAI-NLGSFLGLLY-WKPHPDQLAIFF--VFPAL 355

Query: 361 LGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVV 420
            G+ D V  TQ +AL GILF  + E AFA  ++W+     + F    +I L   + + + 
Sbjct: 356 WGMADAVWQTQTNALYGILFAKNKEAAFANYRMWESLGFVIAFAYSTFICLSTKIYIALA 415

Query: 421 GICVALVGILFL--------TIQVEKAFYSP 443
            + + +V  L++        T QV + F  P
Sbjct: 416 VLALTMVTYLYVEYNEYKHPTPQVTEDFLKP 446

Danio rerio (taxid: 7955)

>sp|Q93380|UNC93_CAEEL Putative potassium channel regulatory protein unc-93 OS=Caenorhabditis elegans GN=unc-93 PE=1 SV=4

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 227/487 (46%), Gaps = 71/487 (14%)

Query: 1   MESVDSRDEE-----------APLVADSLQVL---TPKNYTRDVH--------ILSCAFL 38
           M SVD  D E           A LV    + +   T K     +         ILS AFL
Sbjct: 199 MHSVDDEDNEDLAYIYGHDFLAKLVRKKKREMMSGTEKERANKIKRKIMSNLWILSVAFL 258

Query: 39  LIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKNALILGTT 97
            +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K   ++   
Sbjct: 259 FLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKLTFLIAIF 316

Query: 98  GYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGS 157
            Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   + TVI  
Sbjct: 317 VYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFESQTTVIVR 376

Query: 158 FNGEFWGMFASHQFVGNLITLAVL----------KDDKV---CAALLGGSTSGTTLL--- 201
           F G F+ +    Q VGN+++  +            +D +   C      + S  T L   
Sbjct: 377 FFGYFFMIVHCGQVVGNMVSSYIFTLSYSQALRGPEDSIYDSCGYQFPKNLSDLTELAES 436

Query: 202 -------------FIVFLG-VITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKS 247
                         + +L  VI  G I+  FL                N   + + L   
Sbjct: 437 NLARPPQKVYVAVCLAYLACVIISGMIMSMFLNALAKDARNRKMAQKFNSEIFYLMLKH- 495

Query: 248 ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICS 307
               L +++ +L++PL  ++GL+QAF+   +TK  V   LG+  +G  MA +G  DA+CS
Sbjct: 496 ----LINIKFMLLVPLTIFNGLEQAFLVGVYTKAFVGCGLGIWQIGFVMACFGISDAVCS 551

Query: 308 LAAG---RLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG 364
           L  G   +L   +P   F    GA+  +++ + +++ + + +      Y  ++AA+ G+ 
Sbjct: 552 LVFGPLIKLFGRMPLFVF----GAVVNLLMIVTLMV-WPLNAADTQIFY--VVAAMWGMA 604

Query: 365 DGVLNTQLSAL-LGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGIC 423
           DGV NTQ++   + ++ +   + AF + + W+   IA+ F +  +++++  L++    + 
Sbjct: 605 DGVWNTQINGFWVALVGRQSLQFAFTKYRFWESLGIAIGFALIRHVTVEIYLLITFFMLL 664

Query: 424 VALVGIL 430
           + + G L
Sbjct: 665 LGMCGFL 671

May contribute to coordination of muscle contraction as regulatory subunit of a nonessential potassium channel complex.

Caenorhabditis elegans (taxid: 6239)

>sp|A2VE54|UN93A_BOVIN Protein unc-93 homolog A OS=Bos taurus GN=UNC93A PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 202/420 (48%), Gaps = 38/420 (9%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           ++V +LS  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  +++  L
Sbjct: 6   KNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGKL 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  L+L    Y  F   N + SWYT++PAS+ +G  A+ +W  +GTYLT      A  
Sbjct: 66  GCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQARK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL------------------KDDKVCA 188
                  V+  + G F+ +F S    GNLI+  V                     D + A
Sbjct: 126 TGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSLVFGQMPTQGTIPEEQLQACGASDCLMA 185

Query: 189 ALLGGSTSGTTL-LFIVFLGVIT----LGTILMC-FLRKEED-KGEKETADASVNFYSYL 241
            L   ST+  +  L    LG+ T    L  +LM  FL    D + E E    +  F+S L
Sbjct: 186 TLSANSTNRPSQDLIYTLLGIYTGCGFLAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTL 245

Query: 242 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA 301
           +S  K +      + +LL       SG +QAF+  ++T+   T ALG+  VG  M  +GA
Sbjct: 246 LSTFKLLRDKRLRLLILLP----MLSGFEQAFLSGDYTRSYTTCALGIQFVGYVMICFGA 301

Query: 302 FDAICSLAAGRLT--TGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 359
            DA+CS+  GRL   TG    T + + GA+ Q+   + +L+ +      L   +  +  +
Sbjct: 302 ADALCSVLFGRLARHTGR---TVLFALGAVTQLACIIALLL-WKPHPSQLPVFF--VFPS 355

Query: 360 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 419
           L G+ D V  TQ +AL G+LF+ + E AFA  ++W+     + F    ++ +   L V++
Sbjct: 356 LWGMADAVWQTQNNALFGVLFEKNKEAAFANYRLWEALGFVIAFGYSTFLCVSVKLYVLL 415

Bos taurus (taxid: 9913)

>sp|O43934|MFS11_HUMAN UNC93-like protein MFSD11 OS=Homo sapiens GN=MFSD11 PE=2 SV=2

 Score =  103 bits (256), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 198/459 (43%), Gaps = 69/459 (15%)

Query: 29  DVHILSCAFLLIFLAYGAAQNLETTVNTEGNL------GTISLGILYTSFTCFSLVASLV 82
           ++ IL  AF+ +F A+    N+  TV    N       G  S+ I+Y  F+  +L+   V
Sbjct: 10  NIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYGVFSASNLITPSV 69

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V ++G + ++      Y +++A  + P  ++   AS+++G AA+++W  +G  LT  +  
Sbjct: 70  VAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDE 129

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL-ITLAVLKDDKVCAALLGGSTSGTTLL 201
           H+          IG  +G FW +  S  F GNL I  A     ++       S S    +
Sbjct: 130 HS----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQI-------SESDRRTV 172

Query: 202 FIVFLGVITLGTILMCFLRKEEDK---GEKETAD--------ASVNFYSYLVSLSKSITT 250
           FI    +  +GT+L   +RK + +   GE E++D        ++ N  +  V   K    
Sbjct: 173 FIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDMEVNESAQNNLTKAVDAFKKSFK 232

Query: 251 LLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGA-----MAVYGAFDAI 305
           L     MLL+    AY+GL+  F        +    +G +   GA     + + G F  I
Sbjct: 233 LCVTKEMLLLSITTAYTGLELTFF-----SGVYGTCIGATNKFGAEEKSLIGLSGIFIGI 287

Query: 306 CSLAAGRLTTGLPSITF------IVSGGAIAQVVVFLWILINY------SVTSGVLGTLY 353
             +  G L  GL S         +V  G +   + F  I +N       +   G   + Y
Sbjct: 288 GEILGGSLF-GLLSKNNRFGRNPVVLLGILVHFIAFYLIFLNMPGDAPIAPVKGTDSSAY 346

Query: 354 -------PLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIG 406
                   ++ + LLG+GD   NTQL ++LG L+  D+  AFA  K  Q    AV FF  
Sbjct: 347 IKSSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAIFKFVQSICAAVAFFYS 406

Query: 407 PYISLQAMLIVMVVGICVALVG-ILFLTIQVEKAFYSPR 444
            Y+ L   L+VMV+       G I F T++ E A +  R
Sbjct: 407 NYLLLHWQLLVMVI---FGFFGTISFFTVEWEAAAFVAR 442

Homo sapiens (taxid: 9606)

>sp|Q8BJ51|MFS11_MOUSE UNC93-like protein MFSD11 OS=Mus musculus GN=Mfsd11 PE=1 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 186/428 (43%), Gaps = 53/428 (12%)

Query: 29  DVHILSCAFLLIFLAYGAAQNLETTVNTEGNL------GTISLGILYTSFTCFSLVASLV 82
           ++ IL  AF+ +F A+    N+  TV    N       G  SL I+Y  F+  +L+   V
Sbjct: 10  NIVILGVAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSLAIIYGVFSASNLITPSV 69

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V ++G + ++ +    Y +++A  + P  ++   AS+++G AA+++W  +G  LT  +  
Sbjct: 70  VAIVGPQISMFVSGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDE 129

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL-ITLAVLKDDKVCAALLGGSTSGTTLL 201
           H           IG  +G FW +  S  F GNL I  A     ++       S      +
Sbjct: 130 HT----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQI-------SEHDRRTV 172

Query: 202 FIVFLGVITLGTILMCFLRKEEDK---GEKETAD--------ASVNFYSYLVSLSKSITT 250
           FI    +  +GT+L   +RK + +   GE+E+ D        ++ N  +  V   K    
Sbjct: 173 FIALTVISLVGTVLFFLIRKPDPENVLGEEESCDDQDMEATESAQNNVTKAVDAFKKSLR 232

Query: 251 LLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAA 310
           L     MLL+    AY+GL+  F    +   I       +     + + G F  I  +  
Sbjct: 233 LCVTREMLLLSVTTAYTGLELTFFSGVYGTCIGAVNKFGTEEKSLIGLSGIFIGIGEILG 292

Query: 311 GRLTTGLPSITF-----IVSGGAIAQVVVFLWILINY---SVTSGVLGT-----LYP--- 354
           G L   L   +      +V  G +   V F  I +N    +  + V GT     + P   
Sbjct: 293 GSLFGLLSKNSRFGRNPVVLLGTLVHFVAFYLIFLNMPGDAPIAPVEGTNSIAYIRPSKE 352

Query: 355 --LIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQ 412
             ++ + LLG+GD   NTQL ++LG L+  D+  AFA  K  Q    AV FF   Y+ L 
Sbjct: 353 VAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLH 412

Query: 413 AMLIVMVV 420
             L+VMV+
Sbjct: 413 WQLLVMVI 420

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
359481565	444	PREDICTED: UNC93-like protein-like [Viti	0.986	0.988	0.739	0.0
255581050	439	conserved hypothetical protein [Ricinus	0.986	1.0	0.723	0.0
30680880	437	UNC93-like protein [Arabidopsis thaliana	0.966	0.983	0.711	1e-171
51971130	437	unnamed protein product [Arabidopsis tha	0.966	0.983	0.708	1e-171
297833712	437	hypothetical protein ARALYDRAFT_317751 [	0.964	0.981	0.718	1e-170
224087399	442	predicted protein [Populus trichocarpa]	0.982	0.988	0.715	1e-170
30680871	464	UNC93-like protein [Arabidopsis thaliana	0.921	0.883	0.723	1e-166
449530173	430	PREDICTED: UNC93-like protein 3-like [Cu	0.959	0.993	0.684	1e-162
449439988	430	PREDICTED: UNC93-like protein 3-like [Cu	0.959	0.993	0.684	1e-162
449439994	430	PREDICTED: UNC93-like protein 3-like [Cu	0.959	0.993	0.670	1e-157

>gi|359481565|ref|XP_002273762.2| PREDICTED: UNC93-like protein-like [Vitis vinifera] gi|147782828|emb|CAN76819.1| hypothetical protein VITISV_029718 [Vitis vinifera] gi|297741472|emb|CBI32604.3| unnamed protein product [Vitis vinifera]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/445 (73%), Positives = 380/445 (85%), Gaps = 6/445 (1%)

Query: 1   MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL 60
           M+SVDSRDEE+PLV    Q  T +N+TRDVHILSC+FLLIFLAYGA QNLE++VNT+ +L
Sbjct: 1   MDSVDSRDEESPLVVSDSQSKTLQNHTRDVHILSCSFLLIFLAYGATQNLESSVNTDEDL 60

Query: 61  GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120
           GTI+LGILY SFT FSL+ASLVVR++GSKNALILGTTGYWLF+AANL P W TMVPAS+Y
Sbjct: 61  GTIALGILYLSFTIFSLIASLVVRMMGSKNALILGTTGYWLFMAANLKPRWSTMVPASVY 120

Query: 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
           LGFAAS+IWVG+GTYLTA A SHA+++ LHEGTVIG+FNGEFWGMFASHQF GNLITLA+
Sbjct: 121 LGFAASVIWVGQGTYLTATARSHANDNNLHEGTVIGNFNGEFWGMFASHQFAGNLITLAL 180

Query: 181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSY 240
           LKD         GS  GTTLLFIVFL  +TLGTILM FLR+ ++KGE+ + + +V FYSY
Sbjct: 181 LKDGT------KGSAGGTTLLFIVFLCSMTLGTILMWFLRRRDNKGEEGSLEPAVGFYSY 234

Query: 241 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 300
            VSLSKS+ T L DVRMLLIIPLF YSGLQQAFVWAEFTK IVTPALGVSGVGG+MAV+G
Sbjct: 235 AVSLSKSVITPLFDVRMLLIIPLFVYSGLQQAFVWAEFTKYIVTPALGVSGVGGSMAVFG 294

Query: 301 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL 360
           AFDAICSLAAGRLT+GL SIT+IVSGGA AQV+V LWIL+ Y VTSGVLGT+YPL+MAA+
Sbjct: 295 AFDAICSLAAGRLTSGLLSITWIVSGGAFAQVIVLLWILLKYRVTSGVLGTIYPLLMAAI 354

Query: 361 LGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVV 420
            GIGDGV NTQ++AL+GILFK+DTEGAFAQ KVWQ ASI+VVFF+ PYISLQAML+VM+ 
Sbjct: 355 WGIGDGVFNTQINALIGILFKNDTEGAFAQYKVWQSASISVVFFLSPYISLQAMLVVMLA 414

Query: 421 GICVALVGILFLTIQVEKAFYSPRS 445
            +  A    LFLT +VE+AF S  S
Sbjct: 415 SLFTAFSAFLFLTHKVERAFSSSTS 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581050|ref|XP_002531341.1| conserved hypothetical protein [Ricinus communis] gi|223529063|gb|EEF31048.1| conserved hypothetical protein [Ricinus communis]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/445 (72%), Positives = 377/445 (84%), Gaps = 6/445 (1%)

Query: 1   MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL 60
           M + D+RDEE PLV D+LQ   P+N+TRD+HILS AFLL+FLAYGAAQNL+TT+NT  +L
Sbjct: 1   MATEDARDEERPLVLDNLQNHAPQNHTRDIHILSSAFLLVFLAYGAAQNLQTTINTVHDL 60

Query: 61  GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120
           GTISLGILY SFT FS++ASLVVR LGSKNA++LGTTGYWLF+AANL P+WYTMVPASLY
Sbjct: 61  GTISLGILYLSFTFFSVIASLVVRFLGSKNAVVLGTTGYWLFIAANLMPTWYTMVPASLY 120

Query: 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
           LGFAASIIWVG+GTYLT+ A SHA+++ LHEGTVIG+FNGEFWG+FA HQ VGNLI+LA+
Sbjct: 121 LGFAASIIWVGQGTYLTSTARSHAADYDLHEGTVIGNFNGEFWGVFACHQLVGNLISLAI 180

Query: 181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSY 240
           L+D              TTLLF VFL ++TLG ILMCFL K   KGE+   D+SV+ YS 
Sbjct: 181 LRDGTGGTTSG------TTLLFFVFLCIVTLGIILMCFLSKRVPKGEEGREDSSVSLYSS 234

Query: 241 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 300
           L+S SKS+   L D+RMLLIIPL AYSGLQQAFVWAEFTK+IVTPALGVSGVGG+MAVYG
Sbjct: 235 LISKSKSVIAPLLDIRMLLIIPLIAYSGLQQAFVWAEFTKDIVTPALGVSGVGGSMAVYG 294

Query: 301 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL 360
           AFDAICSLAAGRLT+GL SIT+IVS GA    +VFLWIL+ YS+TSG+LG LYPL+MAA+
Sbjct: 295 AFDAICSLAAGRLTSGLQSITWIVSAGAFLHAIVFLWILLKYSLTSGILGVLYPLLMAAM 354

Query: 361 LGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVV 420
           LG+GDGVLNTQLSALLGILFKHD EGAFAQLKVWQ ASIAVVFF+ PYISLQ M+++M+ 
Sbjct: 355 LGVGDGVLNTQLSALLGILFKHDMEGAFAQLKVWQSASIAVVFFVNPYISLQTMVVIMIA 414

Query: 421 GICVALVGILFLTIQVEKAFYSPRS 445
            + +A+ G LFLT+QVEKAF+SPRS
Sbjct: 415 ALFIAVAGFLFLTLQVEKAFFSPRS 439

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680880|ref|NP_850546.1| UNC93-like protein [Arabidopsis thaliana] gi|51971813|dbj|BAD44571.1| unnamed protein product [Arabidopsis thaliana] gi|222423196|dbj|BAH19575.1| AT3G09470 [Arabidopsis thaliana] gi|332641250|gb|AEE74771.1| UNC93-like protein [Arabidopsis thaliana]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 315/443 (71%), Positives = 360/443 (81%), Gaps = 13/443 (2%)

Query: 1   MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES    DEEAPL++   +  +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MES--RNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNF 237
           LA+LKD K       GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V  
Sbjct: 177 LALLKDGK------EGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGL 230

Query: 238 YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMA 297
              L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMA
Sbjct: 231 VDSLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMA 290

Query: 298 VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM 357
           VYGA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIM
Sbjct: 291 VYGALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIM 350

Query: 358 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIV 417
           AA+LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIV
Sbjct: 351 AAILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIV 410

Query: 418 MVVGICVALVGILFLTIQVEKAF 440
           M+V +CV+L   LFL ++VE  F
Sbjct: 411 MLVMVCVSLFSFLFLALKVENVF 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971130|dbj|BAD44257.1| unnamed protein product [Arabidopsis thaliana] gi|51971419|dbj|BAD44374.1| unnamed protein product [Arabidopsis thaliana]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 314/443 (70%), Positives = 360/443 (81%), Gaps = 13/443 (2%)

Query: 1   MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES    DEEAPL++   +  +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MES--RNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNF 237
           LA+LKD K       GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V  
Sbjct: 177 LALLKDGK------EGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGL 230

Query: 238 YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMA 297
              L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMA
Sbjct: 231 VDSLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMA 290

Query: 298 VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM 357
           VYGA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIM
Sbjct: 291 VYGALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIM 350

Query: 358 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIV 417
           AA+LGIGDG+LNTQ+SALL +LFKHDTEGAFAQL+VWQ A+IA+VFF+ PYISLQAMLIV
Sbjct: 351 AAILGIGDGILNTQISALLALLFKHDTEGAFAQLRVWQSAAIAIVFFLSPYISLQAMLIV 410

Query: 418 MVVGICVALVGILFLTIQVEKAF 440
           M+V +CV+L   LFL ++VE  F
Sbjct: 411 MLVMVCVSLFSFLFLALKVENVF 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833712|ref|XP_002884738.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata] gi|297330578|gb|EFH60997.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 317/441 (71%), Positives = 363/441 (82%), Gaps = 12/441 (2%)

Query: 4   VDSR-DEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN 59
           +DSR DEEAPLV+   +  +    K+YTRDVHILS +FLLIFLAYGAAQNLETTVN +  
Sbjct: 1   MDSRNDEEAPLVSASGEDRKFRAGKSYTRDVHILSISFLLIFLAYGAAQNLETTVNKD-- 58

Query: 60  LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
           LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASL
Sbjct: 59  LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASL 118

Query: 120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
           YLGFAASIIWVG+GTYLT+ A SHA +H LHEG+VIG FNGEFW MFA HQ  GNLITLA
Sbjct: 119 YLGFAASIIWVGQGTYLTSIARSHAKDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLA 178

Query: 180 VLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 239
           +LKD K       GSTSGTTLL +VFL  +TLGTILM F+RK + +  KE   + V    
Sbjct: 179 LLKDGK------EGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKEPVGSPVGLVD 232

Query: 240 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 299
            LVSL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVY
Sbjct: 233 SLVSLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVY 292

Query: 300 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 359
           GA DA+CS+ AGR T+GL SITFI+SGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIMAA
Sbjct: 293 GALDAVCSMTAGRFTSGLSSITFIISGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAA 352

Query: 360 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 419
           +LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIVM+
Sbjct: 353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIVML 412

Query: 420 VGICVALVGILFLTIQVEKAF 440
           V ICV+L+  LFL ++VE  F
Sbjct: 413 VMICVSLLSFLFLALKVENVF 433

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087399|ref|XP_002308151.1| predicted protein [Populus trichocarpa] gi|222854127|gb|EEE91674.1| predicted protein [Populus trichocarpa]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 320/447 (71%), Positives = 372/447 (83%), Gaps = 10/447 (2%)

Query: 1   MESVDS-RDEEAPLVADSLQV---LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNT 56
           M S+D+ RDEE P VA +  V    T +N+T+DVHILS AFLLIFLAYGAAQNLETT+NT
Sbjct: 1   MASMDNNRDEEEPFVAAAASVDNSETLRNHTKDVHILSSAFLLIFLAYGAAQNLETTLNT 60

Query: 57  EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVP 116
           + ++GTISLGILY SFT FSL+AS VVR +GSKNA++LGT+GYWLF+AANL P+WYTMVP
Sbjct: 61  KDDMGTISLGILYVSFTFFSLIASSVVRFMGSKNAVLLGTSGYWLFIAANLKPTWYTMVP 120

Query: 117 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176
           ASLYLGFAASIIWVG+GTYLT+ A S A ++ LHEGTVIG+FNGEFWGMFASHQFVGNLI
Sbjct: 121 ASLYLGFAASIIWVGQGTYLTSTARSQARDYHLHEGTVIGNFNGEFWGMFASHQFVGNLI 180

Query: 177 TLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVN 236
           +LA+L++         GSTSGTTLLF VFL  +TLGTIL+CFL K  D GE+   D+SV+
Sbjct: 181 SLAILRNGT------EGSTSGTTLLFTVFLCSMTLGTILVCFLSKRVDGGEEGPKDSSVS 234

Query: 237 FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAM 296
            YS L SLSKS+ T L DVRMLLIIPL AYSGLQQAFVWAEFT++I TPALGVSGVGG+M
Sbjct: 235 LYSSLTSLSKSVITPLLDVRMLLIIPLIAYSGLQQAFVWAEFTEKIATPALGVSGVGGSM 294

Query: 297 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI 356
           AVYGAFD ICS  AGRLT+G+ SIT+IVS G   Q VVFLWIL+ YS+TSGVLG +YPL+
Sbjct: 295 AVYGAFDTICSFTAGRLTSGIFSITWIVSAGLFLQAVVFLWILLKYSLTSGVLGIVYPLL 354

Query: 357 MAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLI 416
           MAA+LGIGDG +NTQLSALLGILFKHDTEGAFAQLKVWQ ASIAVVFFI PYISLQ M+ 
Sbjct: 355 MAAMLGIGDGAINTQLSALLGILFKHDTEGAFAQLKVWQSASIAVVFFINPYISLQVMVE 414

Query: 417 VMVVGICVALVGILFLTIQVEKAFYSP 443
           +M+  + VA  G L L++++EKAF SP
Sbjct: 415 IMLAALFVAAGGFLVLSLRIEKAFSSP 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680871|ref|NP_187558.2| UNC93-like protein [Arabidopsis thaliana] gi|67462074|sp|Q94AA1.1|UN933_ARATH RecName: Full=UNC93-like protein 3 gi|15146218|gb|AAK83592.1| AT3g09470/F11F8_4 [Arabidopsis thaliana] gi|28460681|gb|AAO43565.1| At3g09470/F11F8_4 [Arabidopsis thaliana] gi|332641249|gb|AEE74770.1| UNC93-like protein [Arabidopsis thaliana]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 306/423 (72%), Positives = 348/423 (82%), Gaps = 13/423 (3%)

Query: 1   MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES +  DEEAPL++   +  +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MESRN--DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNF 237
           LA+LKD K       GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V  
Sbjct: 177 LALLKDGK------EGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGL 230

Query: 238 YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMA 297
              L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMA
Sbjct: 231 VDSLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMA 290

Query: 298 VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM 357
           VYGA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIM
Sbjct: 291 VYGALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIM 350

Query: 358 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIV 417
           AA+LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIV
Sbjct: 351 AAILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIV 410

Query: 418 MVV 420
           M+V
Sbjct: 411 MLV 413

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530173|ref|XP_004172070.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/437 (68%), Positives = 364/437 (83%), Gaps = 10/437 (2%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVASLVVR LG+KNALILGTTGYWLF AANL P+W+TMVPASLYLGF
Sbjct: 61  SLGILYLSFTFFSLVASLVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPASLYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFWG+FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIGNIISLVVLKD 180

Query: 184 DKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 243
           +       GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E +  S + +S ++S
Sbjct: 181 EA------GGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHSSILS 233

Query: 244 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 303
           LSKS+   LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVYGA D
Sbjct: 234 LSKSVVAPLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVYGAAD 293

Query: 304 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 363
           A+CSL AGRLT+GLPSITF+VSGGA+ Q VVF+W+L+  S T   LGT+Y L+++A+LGI
Sbjct: 294 AVCSLVAGRLTSGLPSITFLVSGGAVIQAVVFIWLLLGQSET---LGTVYLLLISAVLGI 350

Query: 364 GDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGIC 423
           GDGV NTQL+ALLGILFKHDTEGAFAQLKVWQ A+I++VFF  PYIS+  ML++++  +C
Sbjct: 351 GDGVFNTQLNALLGILFKHDTEGAFAQLKVWQSATISIVFFFSPYISMHTMLVIILSVLC 410

Query: 424 VALVGILFLTIQVEKAF 440
           ++ V  L LT+ VEK+F
Sbjct: 411 LSYVAFLTLTVWVEKSF 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439988|ref|XP_004137767.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/437 (68%), Positives = 364/437 (83%), Gaps = 10/437 (2%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVASLVVR LG+KNALILGTTGYWLF AANL P+W+TMVPASLYLGF
Sbjct: 61  SLGILYLSFTFFSLVASLVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPASLYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFWG+FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIGNIISLVVLKD 180

Query: 184 DKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 243
           +       GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E +  S + +S ++S
Sbjct: 181 EA------GGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHSSILS 233

Query: 244 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 303
           LSKS+   LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVYGA D
Sbjct: 234 LSKSVVAPLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVYGAAD 293

Query: 304 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 363
           A+CSL AGRLT+GLPSITF+VSGGA+ Q VVF+W+L+  S T   LGT+Y L+++A+LGI
Sbjct: 294 AVCSLVAGRLTSGLPSITFLVSGGAVIQAVVFIWLLLGQSET---LGTVYLLLISAVLGI 350

Query: 364 GDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGIC 423
           GDGV NTQL+ALLGILFKHDTEGAFAQLKVWQ A+I++VFF  PYIS+  ML++++  +C
Sbjct: 351 GDGVFNTQLNALLGILFKHDTEGAFAQLKVWQSATISIVFFFSPYISMHTMLVIILSVLC 410

Query: 424 VALVGILFLTIQVEKAF 440
           ++ V  L LT+ VEK+F
Sbjct: 411 LSYVAFLTLTVGVEKSF 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439994|ref|XP_004137770.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/437 (67%), Positives = 357/437 (81%), Gaps = 10/437 (2%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVA+LVVR LG+KNALILGTTGYWLF AANL P+W+TMVP+S+YLGF
Sbjct: 61  SLGILYLSFTFFSLVAALVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPSSVYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFW +FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWAVFASHQVIGNIISLVVLKD 180

Query: 184 DKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 243
           +       GGST+GTT+LFI+FL V+TLG +LM FLRK ED  E+E + +S +  S + S
Sbjct: 181 EA------GGSTNGTTVLFIIFLCVVTLGIVLMWFLRK-EDSKEEEPSLSSSSLRSSIFS 233

Query: 244 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 303
           LSKS+   LAD+RM+L IPL +YSGLQ AFVWA+FTKE+VTP+LGVSGVGGAMAVYGA D
Sbjct: 234 LSKSVVAPLADIRMILTIPLISYSGLQAAFVWAKFTKEVVTPSLGVSGVGGAMAVYGAAD 293

Query: 304 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 363
           A+CSL AGRLT+GLPSITF+VSGGA+ Q VVF+W+L+  S T   LGT+Y L+++A LGI
Sbjct: 294 AVCSLIAGRLTSGLPSITFLVSGGAVIQAVVFIWLLLGQSET---LGTVYVLLISAFLGI 350

Query: 364 GDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGIC 423
           GDG L  QL+ALLGILFKHD EGAFAQLKVW  A+IA+VFF  PYISL  ML++++  +C
Sbjct: 351 GDGFLYPQLNALLGILFKHDMEGAFAQLKVWHSATIAIVFFFSPYISLHTMLVIILSVLC 410

Query: 424 VALVGILFLTIQVEKAF 440
           ++ V  L LT+ VEK+F
Sbjct: 411 LSYVAFLTLTVGVEKSF 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2074929	464	AT3G09470 "AT3G09470" [Arabido	0.919	0.881	0.705	3e-149
UNIPROTKB|Q86WB7	457	UNC93A "Protein unc-93 homolog	0.471	0.459	0.303	6.6e-42
ZFIN|ZDB-GENE-041014-304	467	unc93a "unc-93 homolog A (C. e	0.494	0.471	0.316	5.4e-40
UNIPROTKB|A2VE54	457	UNC93A "Protein unc-93 homolog	0.494	0.481	0.313	2e-39
FB|FBgn0027556	538	CG4928 [Drosophila melanogaste	0.519	0.429	0.257	2.2e-37
MGI|MGI:1933250	458	Unc93a "unc-93 homolog A (C. e	0.341	0.331	0.341	4.6e-37
WB|WBGene00006822	705	unc-93 [Caenorhabditis elegans	0.323	0.204	0.394	1.4e-36
UNIPROTKB|Q93380	705	unc-93 "Putative potassium cha	0.323	0.204	0.394	1.4e-36
UNIPROTKB|F1MB34	455	F1MB34 "Uncharacterized protei	0.573	0.560	0.291	3e-34
UNIPROTKB|E2QT36	456	UNC93A "Uncharacterized protei	0.775	0.756	0.275	5.4e-31

TAIR|locus:2074929 AT3G09470 "AT3G09470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1457 (517.9 bits), Expect = 3.0e-149, P = 3.0e-149
 Identities = 297/421 (70%), Positives = 339/421 (80%)

Query:     4 VDSR-DEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN 59
             ++SR DEEAPL++ S    +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +  
Sbjct:     1 MESRNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD-- 58

Query:    60 LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASL
Sbjct:    59 LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASL 118

Query:   120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
             YLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLITLA
Sbjct:   119 YLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLA 178

Query:   180 VLKDDKVCAAXXXXXXXXXXXXFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 239
             +LKD K                 +VFL  +TLGTILM F+RK + +  K    + V    
Sbjct:   179 LLKDGK------EGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVD 232

Query:   240 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 299
              L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVY
Sbjct:   233 SLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVY 292

Query:   300 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 359
             GA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIMAA
Sbjct:   293 GALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAA 352

Query:   360 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 419
             +LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIVM+
Sbjct:   353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIVML 412

Query:   420 V 420
             V
Sbjct:   413 V 413

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q86WB7 UNC93A "Protein unc-93 homolog A" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
 Identities = 68/224 (30%), Positives = 120/224 (53%)

Query:   207 GVITLGTILMCFLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA 265
             GV+ +  ++  FL+   D + E E    SV F+S L+S  K    L  D R+ L+I L  
Sbjct:   211 GVLAV-LMIAAFLQPIRDVQRESEGEKKSVPFWSTLLSTFK----LYRDKRLCLLILLPL 265

Query:   266 YSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT--TGLPSITFI 323
             YSGLQQ F+ +E+T+  VT  LG+  VG  M  + A DA+CS+  G+++  TG  ++ ++
Sbjct:   266 YSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGR-AVLYV 324

Query:   324 VSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD 383
             +  GA+  V   + +L+ +   +  L   +  + + L G+ D V  TQ +AL G+LF+  
Sbjct:   325 L--GAVTHVSCMIALLL-WRPRADHLAVFF--VFSGLWGVADAVWQTQNNALYGVLFEKS 379

Query:   384 TEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALV 427
              E AFA  ++W+     + F    ++ +   L +++  + + +V
Sbjct:   380 KEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSLTMV 423

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-041014-304 unc93a "unc-93 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 265 (98.3 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
 Identities = 73/231 (31%), Positives = 112/231 (48%)

Query:   205 FLGVITLGTILMCFLRKEEDKGE-KETADASVN--FYSYLVSLSKSITTLLADVRMLLII 261
             ++GV  L  I +       D+ E KE      N  F+   ++  K    LL D R+LL+I
Sbjct:   207 YIGVGLLAIIFVAVFLDNIDRDEAKEFRSTKGNKSFWDTFLATFK----LLRDPRLLLLI 262

Query:   262 PLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSIT 321
             PL  YSG +Q+F+  E+TK  VT ALG+  VG  M  + A +++CS A GRL      I 
Sbjct:   263 PLTMYSGFEQSFLSGEYTKNYVTCALGIHNVGFVMICFAASNSLCSFAFGRLAQYTGRIA 322

Query:   322 FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK 381
                   AI  +  FL +L  +      L   +  +  AL G+ D V  TQ +AL GILF 
Sbjct:   323 LFCLAAAI-NLGSFLGLLY-WKPHPDQLAIFF--VFPALWGMADAVWQTQTNALYGILFA 378

Query:   382 HDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFL 432
              + E AFA  ++W+     + F    +I L   + + +  + + +V  L++
Sbjct:   379 KNKEAAFANYRMWESLGFVIAFAYSTFICLSTKIYIALAVLALTMVTYLYV 429

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A2VE54 UNC93A "Protein unc-93 homolog A" [Bos taurus (taxid:9913)]

 Score = 252 (93.8 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
 Identities = 74/236 (31%), Positives = 119/236 (50%)

Query:   204 VFLGVITLGTILMC-FLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII 261
             ++ G   L  +LM  FL    D + E E    +  F+S L+S  K    LL D R+ L+I
Sbjct:   206 IYTGCGFLAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTLLSTFK----LLRDKRLRLLI 261

Query:   262 PLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT--TGLPS 319
              L   SG +QAF+  ++T+   T ALG+  VG  M  +GA DA+CS+  GRL   TG   
Sbjct:   262 LLPMLSGFEQAFLSGDYTRSYTTCALGIQFVGYVMICFGAADALCSVLFGRLARHTGR-- 319

Query:   320 ITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 379
              T + + GA+ Q+   + +L+ +      L   +  +  +L G+ D V  TQ +AL G+L
Sbjct:   320 -TVLFALGAVTQLACIIALLL-WKPHPSQLPVFF--VFPSLWGMADAVWQTQNNALFGVL 375

Query:   380 FKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVM--VVGICVALVGILFLT 433
             F+ + E AFA  ++W+     + F    ++ +   L V+  V+   +A  G +  T
Sbjct:   376 FEKNKEAAFANYRLWEALGFVIAFGYSTFLCVSVKLYVLLGVLSAAMAAYGAVEYT 431

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0027556 CG4928 [Drosophila melanogaster (taxid:7227)]

 Score = 245 (91.3 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
 Identities = 61/237 (25%), Positives = 116/237 (48%)

Query:   203 IVFLGVITLGT-ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII 261
             +++L  I     I+  FL   +  GEK     S    S L  LS +   +     + L+I
Sbjct:   249 MIYLSCIVAAVCIIAFFLDPLKRYGEKRKGSNSAAELSGLQLLSATFRQMKKP-NLQLLI 307

Query:   262 PLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSIT 321
             P+  + G++QAF+ A+FT+  V  ALGV+ +G  M  +G  +A+CS+  G +   +    
Sbjct:   308 PITVFIGMEQAFIGADFTQAYVACALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTP 367

Query:   322 FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK 381
              IV G  +   ++ + +    +  + ++   Y   M+ L G+GD V  TQ++ L G+LF+
Sbjct:   368 IIVLGAVVHFTLITVELFWRPNPDNPII--FYA--MSGLWGVGDAVWQTQINGLYGLLFR 423

Query:   382 HDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEK 438
              + E AF+  ++W+ A   + +     +  Q  L +++  + +  +G + + I   K
Sbjct:   424 RNKEAAFSNYRLWESAGFVIAYAYATTLCTQMKLYILLAVLTLGCIGYVIVEILYRK 480

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

MGI|MGI:1933250 Unc93a "unc-93 homolog A (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
 Identities = 53/155 (34%), Positives = 86/155 (55%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             ++V ++SC FLL+F AYG  QNL++++ +E  LG  +L  LY S    S+ +  ++++  
Sbjct:     6 KNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKC 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  ++     Y +F   N   +WYT++P S+ LG  A+ +W  +GTYLT      A  
Sbjct:    66 GCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEK 125

Query:   147 -HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
               KL +  V+  + G F+ +F S    GNLI+  V
Sbjct:   126 VGKLGKD-VVNQYFGIFFLVFQSSGVWGNLISSLV 159

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00006822 unc-93 [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 58/147 (39%), Positives = 88/147 (59%)

Query:    32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
             ILS AFL +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K 
Sbjct:   252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309

Query:    91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
               ++    Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   
Sbjct:   310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369

Query:   151 EGTVIGSFNGEFWGMFASHQFVGNLIT 177
             + TVI  F G F+ +    Q VGN+++
Sbjct:   370 QTTVIVRFFGYFFMIVHCGQVVGNMVS 396

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055120 "striated muscle dense body" evidence=IDA

UNIPROTKB|Q93380 unc-93 "Putative potassium channel regulatory protein unc-93" [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 58/147 (39%), Positives = 88/147 (59%)

Query:    32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
             ILS AFL +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K 
Sbjct:   252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309

Query:    91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
               ++    Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   
Sbjct:   310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369

Query:   151 EGTVIGSFNGEFWGMFASHQFVGNLIT 177
             + TVI  F G F+ +    Q VGN+++
Sbjct:   370 QTTVIVRFFGYFFMIVHCGQVVGNMVS 396

GO:0015459 "potassium channel regulator activity" evidence=IGI

GO:0043266 "regulation of potassium ion transport" evidence=IGI

GO:0006937 "regulation of muscle contraction" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

UNIPROTKB|F1MB34 F1MB34 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
 Identities = 79/271 (29%), Positives = 131/271 (48%)

Query:   169 HQFVGNLITLAVLKDDKVCAAXXXXXXXXXXXXFIVFLGVITLGTILMC-FLRKEED-KG 226
             ++ V ++  L++  D   C++              +F G   L  +LM  FL    D + 
Sbjct:   169 NESVLHIRNLSLCLDPLYCSSTQVPAFRNMQTMTGLFTGCGFLAVLLMAVFLEPVRDAQP 228

Query:   227 EKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPA 286
             E E    +  F+S L+S  K    LL D R+ L+I L   SG +QAF+  ++T+   T A
Sbjct:   229 EGEDEKQAPPFWSTLLSTFK----LLRDKRLRLLILLPMLSGFEQAFLSGDYTRSYTTCA 284

Query:   287 LGVSGVGGAMAVYGAFDAICSLAAGRLT--TGLPSITFIVSGGAIAQVVVFLWILINYSV 344
             LG+  VG  M  +GA DA+CS+  GRL   TG    T + + GA+ Q+   + +L+ +  
Sbjct:   285 LGIQFVGYVMICFGAADALCSVLFGRLARHTGR---TVLFALGAVTQLACIIALLL-WKP 340

Query:   345 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFF 404
                 L   +  +  +L G+ D V  TQ +AL G+LF+ + E AFA  ++W+     + F 
Sbjct:   341 HPSQLPVFF--VFPSLWGMADAVWQTQNNALFGVLFEKNKEAAFANYRLWEALGFVIAFG 398

Query:   405 IGPYISLQAMLIVM--VVGICVALVGILFLT 433
                ++ +   L V+  V+   +A  G +  T
Sbjct:   399 YSTFLCVSVKLYVLLGVLSAAMAAYGAVEYT 429

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|E2QT36 UNC93A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 107/389 (27%), Positives = 183/389 (47%)

Query:    60 LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
             L T+  G+L +S      +  L+++  G K  +++    Y  F   N + SWYT++P S+
Sbjct:    43 LSTLYGGVLLSSM----FLPPLLIKKFGCKWTIVVSMCCYVAFSLGNFYASWYTLIPTSI 98

Query:   120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
              LG  A+ +W  + TYLT    + A N       V+  + G F+ +F S    GNLI+  
Sbjct:    99 LLGLGAAPLWSAQCTYLTIMGNTEAKNVGKVGRDVVNQYFGIFFLIFQSSGVWGNLISSL 158

Query:   180 V---------LKDDKV--CAAXXXXXXXX--------XXXXFIVFLGVIT----LGTILM 216
             V         + ++++  C A                        LG+ T    L  +L+
Sbjct:   159 VFGQTPTQEAIPEEQLLSCGASDCLMATAPTNSTQRPSQTLIYTLLGIYTGSGVLAVLLI 218

Query:   217 C-FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW 275
               FL   +D  +K   +   +F+S L+S  K    LL D R+ L++ L  YSG +QAF+ 
Sbjct:   219 ALFLEPIKDAQQKSEGEKKSSFWSTLLSTFK----LLRDKRLRLLVLLPMYSGFEQAFLA 274

Query:   276 AEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT--TGLPSITFIVSGGAIAQVV 333
              ++T+   T ALG+  VG  M  + A +++CS+  GRL+  TG  ++  +   GA+  + 
Sbjct:   275 GDYTRSYTTCALGIHFVGYVMICFSATNSLCSVLYGRLSQYTGRKALYGL---GAVTHLS 331

Query:   334 VFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKV 393
               + +L+ +      L   +  + + L G+ D V  TQ + L G+LF+ + E AFA  ++
Sbjct:   332 CIVALLL-WKPHPDQLAVFF--VFSGLWGVADAVWQTQNNVLYGVLFEKNKEAAFANYRL 388

Query:   394 WQCASIAVVF----FIGPYISLQAMLIVM 418
             W+     + F    F+  YI L  +L V+
Sbjct:   389 WEALGFVIAFGYSTFLCVYIKLYILLGVL 417

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AA1	UN933_ARATH	No assigned EC number	0.7234	0.9213	0.8836	no	no
Q86WB7	UN93A_HUMAN	No assigned EC number	0.3126	0.8741	0.8512	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023047001 SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_29, whole genome shotgun sequence); (444 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
pfam05978	157	pfam05978, UNC-93, Ion channel regulatory protein	9e-15

>gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 33  LSCAFLLIFLAYGAAQNLETTV----------NTEGNLGTISLGILYTSFTCFSLVASLV 82
           L   FL +F A+ +   +  +V                G  SL I+Y  FT   L A  V
Sbjct: 1   LGFGFLFLFTAFDSQGFILESVIHSLHERDPGTISAYAGYYSLAIIYFFFTVSCLFAPSV 60

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V +L  K A+++G   Y  F    LF + Y +  +S  LG  A+ +W G+G YLT     
Sbjct: 61  VDILTPKWAMVIGALCYASFQLGFLFLNSYYLYFSSALLGVGAAFLWTGQGQYLT----E 116

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176
           +++         I       W +  S    G + 
Sbjct: 117 NSTRET------IERNTSIQWAIGKSSLIFGGIF 144

This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
KOG3098	461	consensus Uncharacterized conserved protein [Funct	100.0
PRK03545	390	putative arabinose transporter; Provisional	99.96
KOG3097	390	consensus Predicted membrane protein [Function unk	99.96
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
PRK11663	434	regulatory protein UhpC; Provisional	99.95
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.95
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
PLN00028	476	nitrate transmembrane transporter; Provisional	99.94
PRK09705	393	cynX putative cyanate transporter; Provisional	99.94
PRK09952	438	shikimate transporter; Provisional	99.94
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.94
PRK03699	394	putative transporter; Provisional	99.94
PRK03633	381	putative MFS family transporter protein; Provision	99.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.94
PRK12307	426	putative sialic acid transporter; Provisional	99.94
PRK10091	382	MFS transport protein AraJ; Provisional	99.93
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.93
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.93
PRK10133	438	L-fucose transporter; Provisional	99.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.93
TIGR00893	399	2A0114 d-galactonate transporter.	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK05122	399	major facilitator superfamily transporter; Provisi	99.93
PRK12382	392	putative transporter; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.93
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.93
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK10489	417	enterobactin exporter EntS; Provisional	99.92
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
PRK11043	401	putative transporter; Provisional	99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.92
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.92
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.92
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.92
PRK10504	471	putative transporter; Provisional	99.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.92
PRK15075	434	citrate-proton symporter; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.91
PRK10054	395	putative transporter; Provisional	99.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.91
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.9
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.9
PRK11010	491	ampG muropeptide transporter; Validated	99.9
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.9
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.89
KOG2533	495	consensus Permease of the major facilitator superf	99.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.89
TIGR00898	505	2A0119 cation transport protein.	99.89
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.89
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.89
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.88
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.88
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.88
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.86
PRK11902	402	ampG muropeptide transporter; Reviewed	99.86
PRK15011	393	sugar efflux transporter B; Provisional	99.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.85
KOG2532	466	consensus Permease of the major facilitator superf	99.85
TIGR00901	356	2A0125 AmpG-related permease.	99.85
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.84
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.84
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.83
KOG0569	485	consensus Permease of the major facilitator superf	99.82
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	99.82
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.82
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.81
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.79
PTZ00207	591	hypothetical protein; Provisional	99.79
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.78
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.76
TIGR00805	633	oat sodium-independent organic anion transporter.	99.75
KOG2615	451	consensus Permease of the major facilitator superf	99.75
KOG0254	513	consensus Predicted transporter (major facilitator	99.71
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.69
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.69
PRK09669	444	putative symporter YagG; Provisional	99.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.67
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.66
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.66
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.66
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.65
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.64
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.64
PRK10429	473	melibiose:sodium symporter; Provisional	99.64
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.63
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.59
PRK09848	448	glucuronide transporter; Provisional	99.59
KOG2563	480	consensus Permease of the major facilitator superf	99.57
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.54
PF13347	428	MFS_2: MFS/sugar transport protein	99.54
PRK11462	460	putative transporter; Provisional	99.51
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.4
COG2211	467	MelB Na+/melibiose symporter and related transport	99.38
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.38
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.37
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.36
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.17
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.15
PRK05122	399	major facilitator superfamily transporter; Provisi	99.11
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.1
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.08
PRK10054	395	putative transporter; Provisional	99.07
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.03
TIGR00900	365	2A0121 H+ Antiporter protein.	99.02
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.02
PRK15011	393	sugar efflux transporter B; Provisional	99.02
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.98
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.98
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.95
PRK12382	392	putative transporter; Provisional	98.94
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.94
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.94
PRK03545	390	putative arabinose transporter; Provisional	98.93
PRK10091	382	MFS transport protein AraJ; Provisional	98.92
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.91
PRK10489	417	enterobactin exporter EntS; Provisional	98.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.88
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.88
PRK11663	434	regulatory protein UhpC; Provisional	98.87
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.87
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.86
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.85
PRK10504	471	putative transporter; Provisional	98.84
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.83
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.83
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.83
PRK10642	490	proline/glycine betaine transporter; Provisional	98.82
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.82
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.8
TIGR00891	405	2A0112 putative sialic acid transporter.	98.8
PRK03699	394	putative transporter; Provisional	98.8
PRK09705	393	cynX putative cyanate transporter; Provisional	98.8
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.79
PRK03633	381	putative MFS family transporter protein; Provision	98.79
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.77
PRK09874	408	drug efflux system protein MdtG; Provisional	98.77
PRK11902	402	ampG muropeptide transporter; Reviewed	98.77
PRK09528	420	lacY galactoside permease; Reviewed	98.76
KOG3626	735	consensus Organic anion transporter [Secondary met	98.75
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.73
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.73
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.73
PRK11043	401	putative transporter; Provisional	98.72
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.72
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.71
TIGR00893	399	2A0114 d-galactonate transporter.	98.71
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.7
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.7
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.68
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.67
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.67
PRK10133	438	L-fucose transporter; Provisional	98.66
TIGR00898	505	2A0119 cation transport protein.	98.66
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.66
PRK11010	491	ampG muropeptide transporter; Validated	98.66
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.64
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.64
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.63
PLN00028	476	nitrate transmembrane transporter; Provisional	98.63
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.63
TIGR00895	398	2A0115 benzoate transport.	98.62
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.61
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.61
PRK12307	426	putative sialic acid transporter; Provisional	98.6
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.57
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.57
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.56
PRK03893	496	putative sialic acid transporter; Provisional	98.55
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.55
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.54
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.53
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.52
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.52
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.51
TIGR00901	356	2A0125 AmpG-related permease.	98.51
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.5
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.49
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.49
PRK09952	438	shikimate transporter; Provisional	98.48
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.47
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.46
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.46
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.45
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.42
PRK09848	448	glucuronide transporter; Provisional	98.42
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.42
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.39
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.37
TIGR00805	633	oat sodium-independent organic anion transporter.	98.36
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.35
PF13347	428	MFS_2: MFS/sugar transport protein	98.33
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.32
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.27
PTZ00207	591	hypothetical protein; Provisional	98.27
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.23
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.23
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.21
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.21
PRK15075	434	citrate-proton symporter; Provisional	98.21
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.13
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.12
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.12
PRK09669	444	putative symporter YagG; Provisional	98.1
COG2211	467	MelB Na+/melibiose symporter and related transport	97.98
PRK10429	473	melibiose:sodium symporter; Provisional	97.98
KOG3762	618	consensus Predicted transporter [General function	97.97
KOG2615	451	consensus Permease of the major facilitator superf	97.95
PRK11462	460	putative transporter; Provisional	97.93
KOG0254	513	consensus Predicted transporter (major facilitator	97.92
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.87
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.86
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.83
KOG2532	466	consensus Permease of the major facilitator superf	97.82
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.78
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.76
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.75
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.7
KOG3762	618	consensus Predicted transporter [General function	97.63
KOG0569	485	consensus Permease of the major facilitator superf	97.62
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.6
KOG3810	433	consensus Micronutrient transporters (folate trans	97.57
COG0477	338	ProP Permeases of the major facilitator superfamil	97.52
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.49
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.48
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.43
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.12
PF12832	77	MFS_1_like: MFS_1 like family	97.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.02
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.92
KOG2533	495	consensus Permease of the major facilitator superf	96.91
KOG0637	498	consensus Sucrose transporter and related proteins	96.73
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.72
KOG0637	498	consensus Sucrose transporter and related proteins	96.33
PF12832	77	MFS_1_like: MFS_1 like family	96.11
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.04
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.83
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.67
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.98
KOG2563	480	consensus Permease of the major facilitator superf	94.91
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.81
COG3202	509	ATP/ADP translocase [Energy production and convers	94.75
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.74
COG0477	338	ProP Permeases of the major facilitator superfamil	94.34
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.98
PRK03612	521	spermidine synthase; Provisional	93.82
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	93.69
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.26
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.03
KOG3626	735	consensus Organic anion transporter [Secondary met	92.06
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.63
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	91.0
KOG3098	461	consensus Uncharacterized conserved protein [Funct	90.96
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	90.27
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	88.27
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	85.42
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	83.13
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	82.47
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	82.41
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	81.52

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.9e-31  Score=262.62  Aligned_cols=394  Identities=26%  Similarity=0.397  Sum_probs=291.0

Q ss_pred             cccccchhHHHHHHHHHHHHHHhhhHhhhhhhc----c------CCCCchHHHHHHHHHHHHhhhhHHHHHHHhCcchhh
Q 013318           23 PKNYTRDVHILSCAFLLIFLAYGAAQNLETTVN----T------EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNAL   92 (445)
Q Consensus        23 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~----~------~~~~g~~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l   92 (445)
                      .++..+++..++.++++.+.+|++...+++++.    +      +.+-|+...+++|..++++++++|.+.|+.|+|+.|
T Consensus         4 ~~~~~~~v~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~l   83 (461)
T KOG3098|consen    4 RRFELLNVLMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWAL   83 (461)
T ss_pred             ccchhheeeehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHH
Confidence            456789999999999999999998877766542    1      245677889999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhh
Q 013318           93 ILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFV  172 (445)
Q Consensus        93 ~~g~~~~~~~~~~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~i  172 (445)
                      ++|..++..+..+++.+|-+.++.+.++.|+|.+..|++++.|++++++          ++++.++.++.|+....+.++
T Consensus        84 v~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st----------~~tie~Nisi~Wai~~~~li~  153 (461)
T KOG3098|consen   84 VIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNST----------RETIERNISIFWAIGQSSLII  153 (461)
T ss_pred             HHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCC----------hhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998888999999999999999999999999984          578999999999999999999


Q ss_pred             hhHHHHHhhcCccccccccCCCCCcchh----------HHHHHHHHHHH---HHHHHHhccCCcccCcccccccchhhhh
Q 013318          173 GNLITLAVLKDDKVCAALLGGSTSGTTL----------LFIVFLGVITL---GTILMCFLRKEEDKGEKETADASVNFYS  239 (445)
Q Consensus       173 G~li~~~l~~~~~~~~~~~~~~~~w~~~----------~~~i~~~l~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~  239 (445)
                      |+.+...+.++....+..   ..+.++.          ....+.++..+   +.+...+.|.++....++     ..+ .
T Consensus       154 Ggi~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~-----~~~-~  224 (461)
T KOG3098|consen  154 GGIILFIYFQFSSSSAII---TDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKS-----SSE-T  224 (461)
T ss_pred             hhHhheeeeEeccccccc---ccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhh-----hcc-c
Confidence            998776665543311000   0111110          01111111111   111112233222111111     111 3


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccc---hhHHHHHHHHHHHHHHHhhhhcccc
Q 013318          240 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVS---GVGGAMAVYGAFDAICSLAAGRLTT  315 (445)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~---~~g~~~~~~~i~~~~g~~~~G~l~d  315 (445)
                      +..+.++...+++++|+++.+.|.+++.|++.+||.+.+|..+.. +..+..   ..+..+...++++++++...+.+.|
T Consensus       225 ~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~  304 (461)
T KOG3098|consen  225 SFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSK  304 (461)
T ss_pred             cHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            556777888999999999999999999999999999999877632 222222   3566677888888888888877765


Q ss_pred             C---CCCccchHhHHHHHHHHHHHHHHhhccCCCC------c---c--chhHHHHHHHHHhhhhhhhhhhhhHHHHhhcc
Q 013318          316 G---LPSITFIVSGGAIAQVVVFLWILINYSVTSG------V---L--GTLYPLIMAALLGIGDGVLNTQLSALLGILFK  381 (445)
Q Consensus       316 ~---~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~------~---~--~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~  381 (445)
                      |   +|++. .+..+.+++....+++.+..+.+.+      .   +  ...+.+++.+++|++|++++++.+.++++.+|
T Consensus       305 rir~fg~~~-~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~  383 (461)
T KOG3098|consen  305 RIRGFGRKP-TVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP  383 (461)
T ss_pred             hhhhcccCc-chhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            5   56655 4567777776665544444442221      0   1  12467889999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          382 HDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQV  436 (445)
Q Consensus       382 ~~~~~a~~~~~~~~~~g~~ig~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  436 (445)
                      +++.++++++++.|+++.+++.+..+............+.+.++....+...++.
T Consensus       384 ~~~~~~fsi~kfyq~~~s~v~~f~~~~~~l~~~~l~~~i~~~i~~~~~~~~~~~~  438 (461)
T KOG3098|consen  384 DDRAQAFSLFKFYQSVASCVAFFFSPYLLLYIYTLGLPIFCVIATTIFFIVAERT  438 (461)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888777777666666666666665554433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.96  E-value=3.2e-26  Score=228.39  Aligned_cols=363  Identities=15%  Similarity=0.061  Sum_probs=238.0

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHH----HHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGI----LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~----~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      +..++.+.++.++..........+.|.+.++.+.+....+.    .+..+++++++.|++.||+|||+++..+..++.+.
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   87 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS   87 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            33445555544443222223345567777777777655443    44456778899999999999999999998887776


Q ss_pred             HHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       103 ~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                      .... ..++++.+++.|+++|++.+..++...+++.++.          |++||++++|++....++|.++|++++..+.
T Consensus        88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545         88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVA----------PAGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            6654 6799999999999999999999998888998887          4679999999999999999999999887765


Q ss_pred             cCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHH
Q 013318          182 KDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI  260 (445)
Q Consensus       182 ~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  260 (445)
                      .+           .+||. .|.+.+++.++..+.. .++|++++  +++         .+    .++..+.+|+|+++..
T Consensus       158 ~~-----------~gw~~-~f~~~~~~~~l~~~~~~~~~~~~~~--~~~---------~~----~~~~~~~~~~~~~~~~  210 (390)
T PRK03545        158 QY-----------LGWRT-TFLAIGGGALITLLLLIKLLPLLPS--EHS---------GS----LKSLPLLFRRPALVSL  210 (390)
T ss_pred             HH-----------hcHHH-HHHHHHHHHHHHHHHHHHhCCCCCC--CCc---------ch----HHHHHHHHhCcHHHHH
Confidence            32           35764 4555555544443332 33444321  111         00    1123456788887644


Q ss_pred             HHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH
Q 013318          261 IPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL  339 (445)
Q Consensus       261 ~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~  339 (445)
                      ....+..........++.++++.+ .+.+.++.+..+...+++.++++++.|++.||.++|. + ..+..+...+... +
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-~-~~~~~~~~~~~~~-l  287 (390)
T PRK03545        211 YLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-L-LIAIALLLVCLLL-L  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-H-HHHHHHHHHHHHH-H
Confidence            332222111111111223333322 3455667888888999999999999999999998764 3 3343333333221 1


Q ss_pred             hhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhc----chhHHHHH
Q 013318          340 INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGP----YISLQAML  415 (445)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~  415 (445)
                      ....++     .....+..+++|++.+...+...+.+.+..|++++.+.|.++....+|..+|..+.+    ..++...+
T Consensus       288 ~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~  362 (390)
T PRK03545        288 LPAANS-----EWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIG  362 (390)
T ss_pred             HHHhch-----HHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHH
Confidence            122222     234556777888887776676777888888877777788777777777766665554    45677888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013318          416 IVMVVGICVALVGILFLTI  434 (445)
Q Consensus       416 ~i~~~~~~~~~~~~~~~~~  434 (445)
                      ++.+++.+++.+...+..+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        363 YVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcc
Confidence            8888888887777665554

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=99.96  E-value=1.5e-28  Score=225.36  Aligned_cols=355  Identities=34%  Similarity=0.484  Sum_probs=274.1

Q ss_pred             CCcCcccccccccc-ccc--CcccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHHHHHHhhhhHHH
Q 013318            5 DSRDEEAPLVADSL-QVL--TPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASL   81 (445)
Q Consensus         5 ~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ai~~l~~g~   81 (445)
                      +-+++++++.+... +.+  ..+...||+.+++.++++.|.+|.+.+++|..++.  +++..+.+.+|.....++++.|.
T Consensus         3 ~~~~~~~~~~s~~~~~~~~r~~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~--~lg~~sl~~~y~~l~~s~m~~~~   80 (390)
T KOG3097|consen    3 LVGAYPNYNESEEEERRYRRKRLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNY--DLGTVSLGALYLSLIDSSMFMPL   80 (390)
T ss_pred             ccccccCCCCCCcccchhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcccchhhhhhHHHHHHHHHHHH
Confidence            45677777766444 222  22348899999999999999999999999999885  88888899999999999999999


Q ss_pred             HHHHhCcchhhhhhhHHHHHHHHHhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhcc-CCCccchhhhhhh
Q 013318           82 VVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH-KLHEGTVIGSFNG  160 (445)
Q Consensus        82 l~dr~G~k~~l~~g~~~~~~~~~~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~-~~~~~~~rg~~~g  160 (445)
                      +++++|.|++++++...+..|.+.+..|.+.+++++...+|+|++++|.+.++|+++..++|+..+ +...+..+.+..|
T Consensus        81 ~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg  160 (390)
T KOG3097|consen   81 LIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFG  160 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehh
Confidence            999999999999999999999999999999999999999999999999999999999999998877 3444556789999


Q ss_pred             HHHHHHHHhhhhhhHHHHHhhcC-------------ccccccccCCC----CCcc--------hhHHHHHHHHHHHHHHH
Q 013318          161 EFWGMFASHQFVGNLITLAVLKD-------------DKVCAALLGGS----TSGT--------TLLFIVFLGVITLGTIL  215 (445)
Q Consensus       161 ~~~~~~~lg~~iG~li~~~l~~~-------------~~~~~~~~~~~----~~w~--------~~~~~i~~~l~~~~~~l  215 (445)
                      .++++++.+.++|++++..+...             ...||+++.+.    .+-+        ..+-.++..++++..++
T Consensus       161 ~Ffii~~~~qv~gn~issli~~~~~~~~~~~sn~t~~~~CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~~  240 (390)
T KOG3097|consen  161 EFFIIFQCAQVWGNLISSLIMTLFLHGALSGSNLTFSVECGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVLI  240 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceeeeecccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHHH
Confidence            99999999999998876544321             12466643210    0000        01222445555555554


Q ss_pred             HHhccCC---cccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccccccccchh
Q 013318          216 MCFLRKE---EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGV  292 (445)
Q Consensus       216 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  292 (445)
                      +.+.-++   +.+++-  ++      .+..+.+.-+.+.++++|+..+.|+..+.|++++|..+.+++.+..++++.+.+
T Consensus       241 ~~~~~~~l~r~~~~r~--~~------~~~l~i~~l~~~~l~~~r~~llvP~tif~GleqaF~~~~fTk~~V~c~~Gv~~i  312 (390)
T KOG3097|consen  241 MLFFLGALKRYGEKRL--AS------VSGLNIFQLTFKHLRDIRLRLLVPLTIFSGLEQAFLCADFTKAYVACALGVSRI  312 (390)
T ss_pred             HHHHHHHHhhhhhhhh--hc------ccccchHHHHHHHhcCcceeeeehhhhhhHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence            4332211   111111  11      111234455678899999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhh
Q 013318          293 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQL  372 (445)
Q Consensus       293 g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  372 (445)
                      |+.+..++++..+.+.++|-+..++||-. ....|.+.+.+.+. ....|.+.+..  ..+.++...+||.+|+.|++++
T Consensus       313 gf~m~cfgv~~Av~S~~~g~L~~~~gr~~-~~v~gavv~l~li~-~~~~w~~~~~~--~~i~y~~aalwgv~d~vw~t~i  388 (390)
T KOG3097|consen  313 GFAMACFGVGDAVASSLFGLLGKWIGRPP-LLVLGAVVHLLLIT-ILFFWAPNPQD--SWIFYVAAALWGVGDAVWKTQI  388 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcc-HHHHHHHHHHHHHH-HHHhcccCCCC--ceEEEeehhhcCccHHHHHhhc
Confidence            99999999999999999999999999765 55678777765543 34567766432  3567889999999999999765


Q ss_pred             h
Q 013318          373 S  373 (445)
Q Consensus       373 ~  373 (445)
                      +
T Consensus       389 n  389 (390)
T KOG3097|consen  389 N  389 (390)
T ss_pred             C
Confidence            3

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.4e-25  Score=216.95  Aligned_cols=369  Identities=14%  Similarity=0.084  Sum_probs=252.8

Q ss_pred             CcccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhH
Q 013318           22 TPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTT   97 (445)
Q Consensus        22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~   97 (445)
                      ..++.+..++.+.++.+++-..-.....+.|++.++.+.+...    .+......+++.++...+.||+.||++++....
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            4456777788888888777666666667788887777776544    344444667888999999999999999999998


Q ss_pred             HHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHH
Q 013318           98 GYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (445)
Q Consensus        98 ~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li  176 (445)
                      ++.+..+.+ .+||+..++++|++.|+..|..|+...++.++..          ||++|++++++......++.++|.++
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv----------pp~~~~~Aiaiv~~G~tlA~v~GvPL  156 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV----------PPGKRGRALALVFTGLTLATVLGVPL  156 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CccchhhHHHHHHHHHHHHHHHhccH
Confidence            888776654 7999999999999999999999999999999997          68899999999999999999999999


Q ss_pred             HHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccc
Q 013318          177 TLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADV  255 (445)
Q Consensus       177 ~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (445)
                      +.++.+.           +|||. .|.+..++.++..+.. ..+|+++..++++             ...++..+.+|+|
T Consensus       157 Gt~ig~~-----------~GWR~-~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~-------------~~~~~~~~~l~~p  211 (394)
T COG2814         157 GTFLGQL-----------FGWRA-TFLAIAVLALLALLLLWKLLPPSEISGSLP-------------GPLRTLLRLLRRP  211 (394)
T ss_pred             HHHHHHH-----------hhHHH-HHHHHHHHHHHHHHHHHHhCCCccCCCCCC-------------cchhHHHHHhcCc
Confidence            9888644           47975 4444455555554433 4566111111111             0112345678899


Q ss_pred             hhHHHHH--HHHHHHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHH
Q 013318          256 RMLLIIP--LFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQV  332 (445)
Q Consensus       256 ~~~~l~~--~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~  332 (445)
                      +.+....  ...+.|....|  ++..+.+. ..+++.+.+++++..+|++..+|+.++||+.|| +.|+.+ .....+..
T Consensus       212 ~v~~~l~~t~l~~~g~F~~f--tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l-~~~~~l~a  287 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALY--TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL-IAALLLLA  287 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhH--HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH-HHHHHHHH
Confidence            8875443  23334433222  23333332 245666788999999999999999999999999 655533 34444444


Q ss_pred             HHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHH----HHHHHHHHHHHHHHHhhcc
Q 013318          333 VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFA----QLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~----~~~~~~~~g~~ig~~i~~~  408 (445)
                      +.++ .+ .+.++.    ........++||+.........+...++..||+++.+.+    .+|....+|+.+|-.+-..
T Consensus       288 ~~~l-~l-~~~~~~----~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~  361 (394)
T COG2814         288 LALL-AL-TFTGAS----PALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA  361 (394)
T ss_pred             HHHH-HH-HHhcch----HHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4432 12 333232    245556666689887766666666677766788776554    4555555666655444444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          409 ISLQAMLIVMVVGICVALVGILFLTIQ  435 (445)
Q Consensus       409 ~~~~~~~~i~~~~~~~~~~~~~~~~~~  435 (445)
                      .++....+..+.+.+++.+..+...++
T Consensus       362 ~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         362 LGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            677777777777777777666544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.95  E-value=3.4e-26  Score=233.58  Aligned_cols=375  Identities=9%  Similarity=-0.067  Sum_probs=228.7

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-
Q 013318           32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-  106 (445)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-  106 (445)
                      .+.+++++.+..........|.+.+|.+++...    .+..+..+++++++.|++.||+|+|+++.++.+++++..+.. 
T Consensus        33 ~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~  112 (467)
T PRK09556         33 VVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFG  112 (467)
T ss_pred             HHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHH
Confidence            333334444555555566677787777776654    344556778899999999999999999998887766544432 


Q ss_pred             -----hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          107 -----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       107 -----~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                           ..+++..+++.|+++|++++..++...++++++.          |++|||+++|++....++|.++|+++...+.
T Consensus       113 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~----------~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        113 ASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT----------PRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc----------CccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence                 2478999999999999999999999999999998          5789999999999989999999988775544


Q ss_pred             cCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCC-cccCccccc----c---cchh----hhhHHHHHHHHH
Q 013318          182 KDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKE-EDKGEKETA----D---ASVN----FYSYLVSLSKSI  248 (445)
Q Consensus       182 ~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~-~~~~~~~~~----~---~~~~----~~~~~~~~~~~~  248 (445)
                      ....        ..+|+. .|.+.+++.++..++. ++++++ ++.+.++.+    +   .+..    ++.+.++..  .
T Consensus       183 ~~~~--------~~~~~~-~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  251 (467)
T PRK09556        183 NYFF--------DGHVIG-MFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIF--V  251 (467)
T ss_pred             Hhhc--------cCcchh-HHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHH--H
Confidence            3211        013553 3444444443333333 344543 221100000    0   0000    000001111  1


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHH
Q 013318          249 TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGG  327 (445)
Q Consensus       249 ~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g  327 (445)
                      .+.+|+|+++.+....+...........+.|.++.+ .+++..+.+.......++.++++++.|+++||+++|+..+ .+
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~-~~  330 (467)
T PRK09556        252 EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV-AC  330 (467)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH-HH
Confidence            136788888876654443332221222344544422 3556667788888899999999999999999999887443 33


Q ss_pred             HHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHH-HHH-----
Q 013318          328 AIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCA-SIA-----  400 (445)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~-g~~-----  400 (445)
                      ..+..++..+...... + +   .....+..++.|++.............|.+|++ ++++.|+.+....+ |.+     
T Consensus       331 ~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~  405 (467)
T PRK09556        331 IALALIIFTLGVYQHA-T-S---EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG  405 (467)
T ss_pred             HHHHHHHHHHHHHHhc-C-c---HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh
Confidence            2222222111111111 1 1   123344555566543333333345666889876 45688988888775 433     


Q ss_pred             HHHHhhc-----------chhHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          401 VVFFIGP-----------YISLQAMLIVMVVGICVALVGILFLT  433 (445)
Q Consensus       401 ig~~i~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~~  433 (445)
                      +|++.++           ..++...+.++.++.+++++.++.+.
T Consensus       406 ~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        406 LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             HHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566661           23577778888888888777776553

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.95  E-value=2.6e-25  Score=222.84  Aligned_cols=372  Identities=15%  Similarity=0.062  Sum_probs=232.2

Q ss_pred             cchhHHHHHHHHHHHH---HHhhhHhhhhhhccCCCCchHHHHHH----HHHHHHhhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           27 TRDVHILSCAFLLIFL---AYGAAQNLETTVNTEGNLGTISLGIL----YTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        27 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      .+++..+.++++..+.   +........|.+.++.+.+....+..    .....+++++.|++.||+|||+++..+.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            3555555555544433   33444456677766667666544433    3455677889999999999999999998877


Q ss_pred             HHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHH
Q 013318          100 WLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (445)
Q Consensus       100 ~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~  178 (445)
                      .+.... ...+++..+++.|++.|++.+..++...+++.|+.          ++++|++++|+++....+|..+++.++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~  160 (406)
T PRK11551         91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV----------GPRLRGTAVSLMYCGVPFGGALASVIGV  160 (406)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665544 35788999999999999999999998889999987          4678999999999999999999988876


Q ss_pred             HhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchh
Q 013318          179 AVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRM  257 (445)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (445)
                      .+...           .+|+. .|.+.+++.++..++ ..++||+++.++++..+ +  +..+..   +...+..+.++.
T Consensus       161 ~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~~~~---~~~~~~~~~~~~  222 (406)
T PRK11551        161 LAAGD-----------AAWRH-IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG-K--QRAPVL---RALFGEGRATAT  222 (406)
T ss_pred             HHccc-----------cCHHH-HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc-h--hhhhhH---HHHhhhhhhhHH
Confidence            55322           35653 444444443333332 34567643321111000 0  001111   111111112222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHH
Q 013318          258 LLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW  337 (445)
Q Consensus       258 ~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~  337 (445)
                      +.+...++...........+.|.+..+.+.+..+.+......+++.++++++.|++.||+++|+.+ ..+.+...+++. 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~-  300 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV-LLIYAGILASLA-  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHH-
Confidence            222222222111111222344544444556666788888899999999999999999999988743 344443333322 


Q ss_pred             HHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch-----hH
Q 013318          338 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI-----SL  411 (445)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~-----~~  411 (445)
                       .....++     .....+..++.|++.+..++..+++..+.+|++. +++.|+++....+|..+++.+.+.+     +.
T Consensus       301 -~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  374 (406)
T PRK11551        301 -ALAAAPS-----FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRST  374 (406)
T ss_pred             -HHHhcCc-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCch
Confidence             1222322     1334456677788777778888899999998764 5578888888888888877766543     34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 013318          412 QAMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       412 ~~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                      ...+++...+.+++.+..+++.+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        375 VGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555555555666655555543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=4.5e-25  Score=221.71  Aligned_cols=373  Identities=12%  Similarity=0.021  Sum_probs=229.6

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~  101 (445)
                      .++.++.+.+.+.+.+.++.+.....|.+.+|.+++...    .+..+..+++++++.|++.||+|||+++..+.+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            456666777777777777777777778887787777655    3445557788899999999999999999999988887


Q ss_pred             HHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          102 FVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       102 ~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      ..... +.+++..+++.|+++|++.+..+++..+++.++.          |+++||+++|+++....+|.++|++++..+
T Consensus        86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332        86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWF----------PAYFRARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66654 6789999999999999999999999888999997          467899999999999999999999988766


Q ss_pred             hcCccccccccCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCcccCc---cccccc-------ch-----hhh--hHHH
Q 013318          181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGE---KETADA-------SV-----NFY--SYLV  242 (445)
Q Consensus       181 ~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~-l~~~l~~~~~~~~---~~~~~~-------~~-----~~~--~~~~  242 (445)
                      ......     .+..+||. .|.+.++..++..+ ..+++||++++++   +++.+.       +.     .+.  .+..
T Consensus       156 ~~~~~~-----~~~~gwr~-~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (412)
T TIGR02332       156 LALDGL-----MALKGWQW-LFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAA  229 (412)
T ss_pred             HhCCCC-----CCccchhH-HHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccccccccc
Confidence            532100     01247874 45555544443333 3356776543211   100000       00     000  0000


Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccccccc--ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCc
Q 013318          243 SLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSI  320 (445)
Q Consensus       243 ~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~--~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~  320 (445)
                      ...+..++.++++.++.....++...........++|.++.+.  +.+....+...+...++..+|+++.|+++||+++|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r  309 (412)
T TIGR02332       230 MPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER  309 (412)
T ss_pred             ccHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence            0011223334456665544433333322222334556554332  23344677788899999999999999999999877


Q ss_pred             cchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHH
Q 013318          321 TFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASI  399 (445)
Q Consensus       321 ~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~  399 (445)
                      +.......++..+.+.  +....++.     ...+....+.+++.....+.......+.+|++ ++.++|+.+....+|.
T Consensus       310 ~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~  382 (412)
T TIGR02332       310 KHHTALPYLFAAAGWL--LASATDHN-----LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGS  382 (412)
T ss_pred             HHHHHHHHHHHHHHHH--HHHhcCCH-----HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhh
Confidence            6433333333333322  11122221     11222222223333222233334445567665 4458899999988888


Q ss_pred             HHHHHhhcc-----hhHHHHHHHHHHH
Q 013318          400 AVVFFIGPY-----ISLQAMLIVMVVG  421 (445)
Q Consensus       400 ~ig~~i~~~-----~~~~~~~~i~~~~  421 (445)
                      ++++.+.+.     .++.+.+.+++++
T Consensus       383 ~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       383 ALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhhhcccccccCCCCchhHHHHHHH
Confidence            877644432     2466666655554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.95  E-value=1.2e-24  Score=220.28  Aligned_cols=370  Identities=11%  Similarity=0.005  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHH----HHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h
Q 013318           33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLG----ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L  107 (445)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~----~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~  107 (445)
                      +.+++++.+..........|.+.++.+++....+    .....+++++++.|++.||+|+|+++.++.++.++..+.. .
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~  107 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF  107 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence            3344444444444555666777777777765433    3444667788999999999999999999998887766654 6


Q ss_pred             hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccc
Q 013318          108 FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVC  187 (445)
Q Consensus       108 ~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~  187 (445)
                      .+++..++..|++.|++.|..++...+++.+++          ++++||+++|+++...++|.++|+++...+...    
T Consensus       108 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~----  173 (434)
T PRK11663        108 SSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY----------SRTERGGWWAIWNTAHNVGGALIPLVVGAIALH----  173 (434)
T ss_pred             HhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence            788889989999999999999998888999987          467899999999999999999999888766532    


Q ss_pred             ccccCCCCCcchhHHHHHHHHHHHHH-HHHHhccCCcccC---c-----ccccccchhhhhHHHHHHHHHH--Hhhccch
Q 013318          188 AALLGGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEEDKG---E-----KETADASVNFYSYLVSLSKSIT--TLLADVR  256 (445)
Q Consensus       188 ~~~~~~~~~w~~~~~~i~~~l~~~~~-~l~~~l~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~  256 (445)
                             .+||. .|.+.+++.++.. +..+++|++++..   +     ++..+.++... +.+...++..  ..+|+|+
T Consensus       174 -------~gw~~-~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  244 (434)
T PRK11663        174 -------YGWRY-GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQE-GAGLSRKEILTKYVLLNPY  244 (434)
T ss_pred             -------ccHHH-HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhcc-ccCCChhhhHHHHHhcChH
Confidence                   35764 3444444433332 2334566543211   0     00000000000 0000111211  2567888


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCC--CccchHhHHHHHHHH
Q 013318          257 MLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLP--SITFIVSGGAIAQVV  333 (445)
Q Consensus       257 ~~~l~~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g--~~~~~i~~g~~~~~~  333 (445)
                      ++.....++...........++|.++. +.+++..+.+.....++++..+++++.|+++||+.  +|+.......+...+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~  324 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL  324 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence            776654433332222222344554442 23566667788888999999999999999999983  333221111111111


Q ss_pred             HHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----
Q 013318          334 VFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----  408 (445)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----  408 (445)
                      .... +.... ..+   ........+.+|++............++.+|++ ++.+.|+.+....+|.++++.+.+.    
T Consensus       325 ~~~~-~~~~~-~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~  399 (434)
T PRK11663        325 SVGS-LWLMP-FAS---YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI  399 (434)
T ss_pred             HHHH-HHHcc-ccc---HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence            1111 11122 111   122223333344433222333345677888765 4557899988888888776544433    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 013318          409 ISLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       409 ~~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      .++...+++.+++.+++++...
T Consensus       400 ~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        400 WHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH
Confidence            3566677777777666655444

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.95  E-value=1.2e-24  Score=220.03  Aligned_cols=371  Identities=12%  Similarity=0.017  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHhhhHhhhhhhccCC---CCchH-------HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH
Q 013318           34 SCAFLLIFLAYGAAQNLETTVNTEG---NLGTI-------SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (445)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~i~~~~---~~g~~-------~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~  103 (445)
                      .++.++.+.++.......|.+.+|.   +....       ..+..+....+++++.|++.||+|||+++.++..++++.+
T Consensus        28 ~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  107 (432)
T PRK10406         28 SSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGS  107 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            3445555666655555666665542   22222       1222333444889999999999999999999999988877


Q ss_pred             HHh-hhcchh--------hHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhh
Q 013318          104 AAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (445)
Q Consensus       104 ~~~-~~~~~~--------~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~  174 (445)
                      ... +.|++.        .+++.|+++|+|.|..++...++++|+.          |+++||++.++.+.....|..+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~----------p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406        108 LVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVA----------VEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhC----------CCCcccHHHHHHHHHHHHHHHHHH
Confidence            664 556653        5788999999999999999999999997          578999999988877777777777


Q ss_pred             HHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhcc
Q 013318          175 LITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLAD  254 (445)
Q Consensus       175 li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (445)
                      ++...+......   .....++||. .|.+.++..++...+...+||+++   .+.++  .++    +   ++..+++|+
T Consensus       178 ~~~~~~~~~~~~---~~~~~~gWr~-~F~i~~~~~ll~~~~~~~~~e~~~---~~~~~--~~~----~---~~~~~l~~~  241 (432)
T PRK10406        178 LVVVVLQQTLED---AELREWGWRI-PFALGAVLAVVALWLRRQLDETSQ---QETRA--LKE----A---GSLKGLWRN  241 (432)
T ss_pred             HHHHHHHHhCCH---HHHhccchHH-HHHHHHHHHHHHHHHHhcCCCCch---HHHhh--hcc----c---ccHHHHHhh
Confidence            655443321100   0001257874 343333322222111112233211   11000  000    0   122345667


Q ss_pred             chhHHHHHHHHHH-HHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHH
Q 013318          255 VRMLLIIPLFAYS-GLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQV  332 (445)
Q Consensus       255 ~~~~~l~~~~~~~-g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~  332 (445)
                      |+.+......+.. .........++|.++.+ .+++.++.+.......+...++.++.|+++||++||+.++ .+.++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~-~~~~~~~  320 (432)
T PRK10406        242 RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSML-CFGSLAA  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH-HHHHHHH
Confidence            7766544333222 12111123445554432 3455556777777778888888999999999999887543 3333222


Q ss_pred             HHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHH-HHHHHHH----hh
Q 013318          333 VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCA-SIAVVFF----IG  406 (445)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~-g~~ig~~----i~  406 (445)
                      +..............   ....+....+..++.+...+..+++.+|.+|++ |++++|+.+..... .....+.    ++
T Consensus       321 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~  397 (432)
T PRK10406        321 LFTVPILSALQNVSS---PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK  397 (432)
T ss_pred             HHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence            221111111111111   111111111122222333445667889999986 55678865544332 2222322    22


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          407 PYISLQAMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       407 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                      ...++...++..++..+++.+..+.+++
T Consensus       398 ~~g~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        398 SIGMETAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            2222344455555666666666555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.95  E-value=4.7e-25  Score=217.56  Aligned_cols=346  Identities=13%  Similarity=0.028  Sum_probs=221.5

Q ss_pred             HhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHH
Q 013318           44 YGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPAS  118 (445)
Q Consensus        44 ~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r  118 (445)
                      ..+...+.|.+.++.+++...    .+..+..+++++++.|++.||+|||+++.++..+..+..... ..+++..+++.|
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY   98 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777777777776654    344555667888999999999999999999998877766553 678999999999


Q ss_pred             HHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcc
Q 013318          119 LYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGT  198 (445)
Q Consensus       119 ~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~  198 (445)
                      ++.|+|.+..++....++.++.           |++|+++.++.....++|..+++.+...+...           .+||
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~  156 (377)
T TIGR00890        99 GLASAGVGIAYGIALNTAVKWF-----------PDKRGLASGIIIGGYGLGSFILSPLITSVINL-----------EGVP  156 (377)
T ss_pred             HHHhHHHHHHHHhHHHHHHHHc-----------CcccHHHHHHHHHhcchhHhHHHHHHHHHHhc-----------ccHH
Confidence            9999999988877777777765           46899999999988888887665554433321           3576


Q ss_pred             hhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhh
Q 013318          199 TLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAE  277 (445)
Q Consensus       199 ~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~  277 (445)
                      . .|.+.+++.++..+.. +++++|+++++++..+.+     +.+   ++..+.+|+|+++.+...++............
T Consensus       157 ~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (377)
T TIGR00890       157 A-AFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS-----VKD---YTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGL  227 (377)
T ss_pred             H-HHHHHHHHHHHHHHHHHHheecCchhccccCcccc-----hhh---hhHHHHHcCccHHHHHHHHHHHhHHHHHHHHH
Confidence            3 4555555554443333 445554432211101100     001   12345677888766554433333322222222


Q ss_pred             hcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHH
Q 013318          278 FTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  357 (445)
Q Consensus       278 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (445)
                      ++.+..+.+.+.++.+......+++..+++++.|++.||++||+. +..+.++..++.+.  ..+.++..   ....+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~  301 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT-MSIVFGISAVGMAA--MLFIPMLN---DVLFLAT  301 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHH--HHHcccch---hHHHHHH
Confidence            232222233444567788889999999999999999999998874 44555555544332  22232211   1223344


Q ss_pred             HHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHH
Q 013318          358 AALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVAL  426 (445)
Q Consensus       358 ~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~  426 (445)
                      .++.|++.+...+..++++.|.+|++ +++++|+++....+|..+++.+.+.    .++.+.+.+.+++.+++.
T Consensus       302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            55667777766677778899999876 4567899888888888887765543    355666666665555543

>TIGR00897 2A0118 polyol permease family

Probab=99.94  E-value=5e-24  Score=213.49  Aligned_cols=376  Identities=12%  Similarity=0.065  Sum_probs=224.6

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      .-+|++....++.++.........+..+.+.++.+.+....    +.....+.+++++.|++.||+||||++..+..+++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~   89 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWC   89 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            34566666666666555554434444444444555555443    33444567788999999999999999999998776


Q ss_pred             HHHHHh----h-hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhh-hhhh
Q 013318          101 LFVAAN----L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ-FVGN  174 (445)
Q Consensus       101 ~~~~~~----~-~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~-~iG~  174 (445)
                      +..+..    . .+++..++..|+++|+|.+...+....++.++.          ++++||+++|++++..++|. .+|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~~~~g~~~~g~  159 (402)
T TIGR00897        90 VGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT----------KQDNLSSAVGWFWAVYSIGIGVFGS  159 (402)
T ss_pred             HHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654432    1 357888888999999999887777666676665          46789999999999999886 5788


Q ss_pred             HHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhc
Q 013318          175 LITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLA  253 (445)
Q Consensus       175 li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (445)
                      +++..+...           .+|+...+ .......++.++. ++.++++++++++ ++ +     +.++..+.....+|
T Consensus       160 ~~~~~l~~~-----------~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-----~~~~~~~~~~~~~~  220 (402)
T TIGR00897       160 YYSSYAIPA-----------FGEMNTLW-SALAFVLTGGVIALFSNKDIFTPQHMQ-TR-E-----KFSELGKAATILFT  220 (402)
T ss_pred             HHHHhcccc-----------cchHHHHH-HHHHHHHHHHHHHHhccCCCCCccccc-CC-c-----chhhHHHHHHHHHc
Confidence            877655432           23322111 1111222222333 3344432111111 00 0     01111122335678


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHH
Q 013318          254 DVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVV  333 (445)
Q Consensus       254 ~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~  333 (445)
                      +|+++......+.......-...+.|.++.+.+++..+.+.+....+++..++++..|+++||++||+.....+.+...+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~  300 (402)
T TIGR00897       221 NPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGI  300 (402)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence            88887655443332222111123344333334555566777778889999999999999999999887543233222222


Q ss_pred             H-HHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc----
Q 013318          334 V-FLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY----  408 (445)
Q Consensus       334 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~----  408 (445)
                      + ..+.+.......+   ....++..+++|++.+...+ ..+.+.+..|++++.++|+++....+|..+++.+.+.    
T Consensus       301 ~~~~l~~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  376 (402)
T TIGR00897       301 FTLALYYIPQHFGHS---FAVALIIAIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF  376 (402)
T ss_pred             HHHHHHHHHHccCCc---HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2 1111111000111   23445567777887776654 3566777778777788999999999888777655533    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          409 ISLQAMLIVMVVGICVALVGILFLT  433 (445)
Q Consensus       409 ~~~~~~~~i~~~~~~~~~~~~~~~~  433 (445)
                      .+....+.+.+++.+++.+...+++
T Consensus       377 ~g~~~~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       377 FGAIGVVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455666777776666666665553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=7.2e-24  Score=212.34  Aligned_cols=377  Identities=14%  Similarity=0.086  Sum_probs=235.3

Q ss_pred             ccccCcccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCch---------HHHHHHHHHHHHhhhhHHHHHHHhCc
Q 013318           18 LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGT---------ISLGILYTSFTCFSLVASLVVRVLGS   88 (445)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~---------~~~~~~~~~~ai~~l~~g~l~dr~G~   88 (445)
                      |++.||   +++...+.++.++...++.....+.|.+.++.+.+.         ...++.+....+++++.|++.||+||
T Consensus         7 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~   83 (408)
T PRK09874          7 DTPINW---KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGR   83 (408)
T ss_pred             CCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence            444555   445556666666666665555555565554444332         12334445667788999999999999


Q ss_pred             chhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHH
Q 013318           89 KNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA  167 (445)
Q Consensus        89 k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~  167 (445)
                      |+++..+.....+..... ..++++.+++.|++.|++.+. .+....++.++.          ++++|+++.|+......
T Consensus        84 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  152 (408)
T PRK09874         84 KIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGF-VPNANALIATQV----------PRNKSGWALGTLSTGGV  152 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhc----------CHhhhhHHHHHHHHHHH
Confidence            999999888776655543 567888899999999998654 455556666665          56789999999999999


Q ss_pred             HhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHH
Q 013318          168 SHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSK  246 (445)
Q Consensus       168 lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (445)
                      .|..+|+.++..+...           .+|+. .|.+..++.++..++. +++|++++..+++  +     ..    ..+
T Consensus       153 ~g~~~~~~~~~~l~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~----~~~  209 (408)
T PRK09874        153 SGALLGPLAGGLLADS-----------YGLRP-VFFITASVLFLCFLVTLFCIRENFQPVSKK--E-----ML----HMR  209 (408)
T ss_pred             HHHHHHHHHHHHHHHH-----------hCHHH-HHHHHHHHHHHHHHHHHHHhccCcccccch--h-----hh----HHH
Confidence            9999999888766532           24653 4555555444444433 4455543211111  0     00    112


Q ss_pred             HHHHhhccchhHHHHH-HHHHHHHHHHHHHhhhcccccccccccc----hhHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 013318          247 SITTLLADVRMLLIIP-LFAYSGLQQAFVWAEFTKEIVTPALGVS----GVGGAMAVYGAFDAICSLAAGRLTTGLPSIT  321 (445)
Q Consensus       247 ~~~~~l~~~~~~~l~~-~~~~~g~~~~f~~~~~~~~~~~~~~~~~----~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~  321 (445)
                      +..+.+|+++++.... ..+..........+.++.+..+...+.+    ..+.+....+++.+++++..|++.||++||+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~  289 (408)
T PRK09874        210 EVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK  289 (408)
T ss_pred             HHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            3345677887654322 1221111112222223322222111222    2355566778888899999999999999887


Q ss_pred             chHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHH
Q 013318          322 FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIA  400 (445)
Q Consensus       322 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~  400 (445)
                      . +..+..+..++.+  ...+.++     ....++..+++|++.+...+...+.+.+..|++ ++..++.++..+.+|..
T Consensus       290 ~-~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  361 (408)
T PRK09874        290 I-LITALIFSVLLLI--PMSFVQT-----PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNV  361 (408)
T ss_pred             h-HHHHHHHHHHHHH--HHHHhcc-----HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHH
Confidence            4 4455544444332  2223322     234556677889999988888888888888765 45578888888888877


Q ss_pred             HHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013318          401 VVFFIGPY----ISLQAMLIVMVVGICVALVGILFLTIQVEKA  439 (445)
Q Consensus       401 ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  439 (445)
                      +|+.+.+.    .++.+.+++.+++.+++.+...+..+|.+++
T Consensus       362 ~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~  404 (408)
T PRK09874        362 TGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIP  404 (408)
T ss_pred             hhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            77666543    4677888888888888877776655554443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=2.5e-24  Score=221.16  Aligned_cols=349  Identities=10%  Similarity=0.020  Sum_probs=196.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCC--C----ch---H-HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGN--L----GT---I-SLGILYTSFTCFSLVASLVVRVLGSKNALILGTT   97 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~----g~---~-~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~   97 (445)
                      +.++...++.++.+.++.......|.+.++..  .    +.   . ..+..+..+++++++.|++.||+|||+++.++.+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   95 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV   95 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            34445556666666565554444454433311  1    11   1 1355566788999999999999999999999999


Q ss_pred             HHHHHHHHh-hhcchhh--------HHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHH
Q 013318           98 GYWLFVAAN-LFPSWYT--------MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS  168 (445)
Q Consensus        98 ~~~~~~~~~-~~~~~~~--------li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~l  168 (445)
                      ++++.++.+ +.|++..        +++.|+++|+|.|..+++..++++|++          |+++||++.++......+
T Consensus        96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~----------p~~~Rg~~~~~~~~~~~~  165 (490)
T PRK10642         96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS----------PDRKRGFMGSWLDFGSIA  165 (490)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC----------CCCCCcHHHHHHHHHHHH
Confidence            998877765 6788754        788999999999999999999999998          468999999998888888


Q ss_pred             hhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccC-ccccccc-chhh-hhHHHHHH
Q 013318          169 HQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG-EKETADA-SVNF-YSYLVSLS  245 (445)
Q Consensus       169 g~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~-~~~~~~~-~~~~-~~~~~~~~  245 (445)
                      |..+|+.+...+......   .....++||. .|++..++.+++.++..++||+++.. +++..++ +.+. .+..+.. 
T Consensus       166 G~~lg~~~~~~~~~~~~~---~~~~~~gWR~-~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~-  240 (490)
T PRK10642        166 GFVLGAGVVVLISTIVGE---ANFLDWGWRI-PFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVS-  240 (490)
T ss_pred             HHHHHHHHHHHHHHhcCH---HHhcCccHHH-HHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCC-
Confidence            888887665443321110   0001357874 34443333333333323455543211 0000000 0000 0000001 


Q ss_pred             HHHHHhhc-cchhHHHH-HHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccc
Q 013318          246 KSITTLLA-DVRMLLII-PLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITF  322 (445)
Q Consensus       246 ~~~~~~l~-~~~~~~l~-~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~  322 (445)
                        ..+.++ +++.+... ...+...........+.|.++. ..+++....++......++..++.++.|+++||+|||+.
T Consensus       241 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  318 (490)
T PRK10642        241 --FKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF  318 (490)
T ss_pred             --HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence              112222 22322222 1122222211112234444332 223444455666677788889999999999999999874


Q ss_pred             hHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHH-HHHHHHHH
Q 013318          323 IVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQ-LKVWQCAS  398 (445)
Q Consensus       323 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~-~~~~~~~g  398 (445)
                      + ..+.++..+.....+.... +..   ....++..++.|++.+...+....++.+++|++.+ ++.|. ++.....|
T Consensus       319 ~-~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g  391 (490)
T PRK10642        319 V-ILGSVALFVLAIPAFILIN-SNV---IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA  391 (490)
T ss_pred             H-HHHHHHHHHHHHHHHHHHh-CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH
Confidence            3 4444332221111111111 111   13344445556666555666667788899998755 46774 56544443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.94  E-value=1.8e-24  Score=221.21  Aligned_cols=375  Identities=14%  Similarity=0.049  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHhhhHhhhhhhccCCCCchHHHH----HHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhc
Q 013318           35 CAFLLIFLAYGAAQNLETTVNTEGNLGTISLG----ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP  109 (445)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~----~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~  109 (445)
                      +.+++.+..........|.+.++.+++....+    .....+.+++++.|++.||+|||+++..+.+++++..+.. ..+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~  122 (476)
T PLN00028         43 ISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS  122 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc
Confidence            33444444444555666777777777654433    3344566788999999999999999999888877766543 577


Q ss_pred             chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccccc
Q 013318          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAA  189 (445)
Q Consensus       110 ~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~  189 (445)
                      ++..+++.|+++|++.+...+ ...+++++.          ++++||+++|+.....++|..+|+.+...+.......+ 
T Consensus       123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~----------~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-  190 (476)
T PLN00028        123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMF----------NGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-  190 (476)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhc----------ChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            888888899999999886543 345677776          56789999999987777888877766544322110000 


Q ss_pred             ccCCCCCcchhHHHHHHHHHHHHHHHHHhcc-CCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 013318          190 LLGGSTSGTTLLFIVFLGVITLGTILMCFLR-KEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG  268 (445)
Q Consensus       190 ~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g  268 (445)
                       .....+||. .|.+.+++.++..++.++++ ++++.+.++..++...++.+..   +...+.+++++++.+...++...
T Consensus       191 -~~~~~gWr~-~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  265 (476)
T PLN00028        191 -APSFTAWRI-AFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFS---KVLRYGVTNYRTWILALTYGYSF  265 (476)
T ss_pred             -CcchhhhHH-HHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHH---HHHHHHHcCchhHHHHHHHHHHH
Confidence             001136864 45555555554444444443 3221111110000000001111   22345678888776554333221


Q ss_pred             HHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCcc----c--hHhHHHHHHHHHHHHHHhh
Q 013318          269 LQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSIT----F--IVSGGAIAQVVVFLWILIN  341 (445)
Q Consensus       269 ~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~----~--~i~~g~~~~~~~~~~~~~~  341 (445)
                      .......++.+.++.+ .+++....+.+.+.++++..+++++.|+++||++||+    +  +.....++..++.+  ...
T Consensus       266 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~--~~~  343 (476)
T PLN00028        266 GVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI--WLG  343 (476)
T ss_pred             HHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH--Hhc
Confidence            1111112334444332 3566667888888999999999999999999997652    1  11122222222211  122


Q ss_pred             ccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHH
Q 013318          342 YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGP---YISLQAMLIVM  418 (445)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~---~~~~~~~~~i~  418 (445)
                      ..++     .....+..++++++.+...+..+++..++.|++++.++|+.+....+|..++..+-.   ..++...+++.
T Consensus       344 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~  418 (476)
T PLN00028        344 RANS-----LGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLM  418 (476)
T ss_pred             ccch-----HHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHH
Confidence            2222     122233334445544444444555666777777777888887777777766543332   23577888888


Q ss_pred             HHHHHHHHHHHHHHH
Q 013318          419 VVGICVALVGILFLT  433 (445)
Q Consensus       419 ~~~~~~~~~~~~~~~  433 (445)
                      +++.+++.+..+++.
T Consensus       419 ~~~~~i~~~~~~~~~  433 (476)
T PLN00028        419 GVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHHHHHhee
Confidence            888888888777764

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.94  E-value=4.9e-24  Score=212.87  Aligned_cols=341  Identities=9%  Similarity=-0.024  Sum_probs=217.3

Q ss_pred             hhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHH
Q 013318           46 AAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLY  120 (445)
Q Consensus        46 ~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l  120 (445)
                      ....+.|.+.+|.+++...    .+..+..+++++++.|++.||+|||+++..+..++++..+.. +.+++..+++.|++
T Consensus        27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l  106 (393)
T PRK09705         27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALL  106 (393)
T ss_pred             ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence            3446677777777777654    444555778889999999999999999999999998877765 78999999999999


Q ss_pred             hhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchh
Q 013318          121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTL  200 (445)
Q Consensus       121 ~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~  200 (445)
                      +|+|.+..++....++.++.           |+||++++|++.+....|..+|++++..+..+.          .+||..
T Consensus       107 ~Gig~~~~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~----------~~w~~~  165 (393)
T PRK09705        107 GGVGIGIIQAVMPSVIKRRF-----------QQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS----------ETWYQT  165 (393)
T ss_pred             HHhHHHHHhhhhhHHHHHHc-----------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCHHHH
Confidence            99999999998888887775           478999999999988899999998887665432          257643


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcc
Q 013318          201 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK  280 (445)
Q Consensus       201 ~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~  280 (445)
                       +.++.+..++..+..+..++++++++++  ++     .+       ..+.+|+++.+.+...++...........+.+.
T Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~-------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~  230 (393)
T PRK09705        166 -LAWWALPAVVALFAWWWQSAREVASSHK--TT-----TT-------PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPA  230 (393)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcCCCccccC--CC-----cC-------CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2233333222222222222211111100  00     00       123456777665544333333222222344555


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHH
Q 013318          281 EIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL  360 (445)
Q Consensus       281 ~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  360 (445)
                      ++.+.+++..+.|.....++++.++++++.|++.||.++|+. +..+..+..++...  +.+.+...    ...  ...+
T Consensus       231 ~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~----~~~--~~~l  301 (393)
T PRK09705        231 FYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL-LMLALVLQLVGFCG--FIWLPLQL----PVL--WAMV  301 (393)
T ss_pred             HHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHHHHH--HHHccchH----HHH--HHHH
Confidence            544456666678889999999999999999999999998864 44555554444321  12222211    111  2334


Q ss_pred             HhhhhhhhhhhhhHHHHhhcc-CC-chhhHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHHHHHH
Q 013318          361 LGIGDGVLNTQLSALLGILFK-HD-TEGAFAQLKVWQCASIAVVFFIGPY-----ISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       361 ~G~~~~~~~~~~~~~l~~~~~-~~-~~~a~~~~~~~~~~g~~ig~~i~~~-----~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      .|++.+...+.......+..+ ++ +++++|..+....++..+++.+.++     .++...+++.++++++..++...
T Consensus       302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            577766666766666667664 33 3456787777777766665544432     34556666666666655555433

>PRK09952 shikimate transporter; Provisional

Probab=99.94  E-value=6.7e-24  Score=214.89  Aligned_cols=382  Identities=13%  Similarity=0.064  Sum_probs=210.1

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHhhhhh-hccCC--CCc----hHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhh
Q 013318           27 TRDVHILSCAFLLIFLAYGAAQNLETT-VNTEG--NLG----TIS----LGILYTSFTCFSLVASLVVRVLGSKNALILG   95 (445)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~--~~g----~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g   95 (445)
                      ++-++...++.++.+.++.....+.+. +.++.  +.+    ...    .++-+....+++++.|++.||+|||+++.++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~  100 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence            344455555666666665544444432 22111  222    211    1233344567888999999999999999999


Q ss_pred             hHHHHHHHHHh-hhcchh--------hHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHH
Q 013318           96 TTGYWLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF  166 (445)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~--------~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~  166 (445)
                      .+++++.++.. +.+++.        .++..|+++|++.|..+++..+++.|+.          |+++||+..+....+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~----------p~~~rg~~~~~~~~g~  170 (438)
T PRK09952        101 VWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA----------PKNKKAFYSSGVQVGY  170 (438)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC----------CCCCCcHHHHHHHHHH
Confidence            99888877764 677765        4778999999999999999999999997          4678999999988888


Q ss_pred             HHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHH
Q 013318          167 ASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK  246 (445)
Q Consensus       167 ~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+|.++|+.+...+.......+   ...++||. .|.+.++..++...+-..+||+++..+++.++++.+++.+.     
T Consensus       171 ~~G~~l~~~~~~~l~~~~~~~~---~~~~gWr~-~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~-----  241 (438)
T PRK09952        171 GVGLLLSTGLVSLISMMTTDEQ---FLSWGWRI-PFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPV-----  241 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHH---hhccChHH-HHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCH-----
Confidence            8888888766554432211000   01257874 34433332222111111233322110000000000000011     


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHH-HHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchH
Q 013318          247 SITTLLADVRMLLIIPLFAYSGLQQAF-VWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV  324 (445)
Q Consensus       247 ~~~~~l~~~~~~~l~~~~~~~g~~~~f-~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i  324 (445)
                       ....+|+|+.+..............+ ..++.+.+.. ..+++.+....+....++...++.++.|+++||++||+.+ 
T Consensus       242 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~-  319 (438)
T PRK09952        242 -IEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY-  319 (438)
T ss_pred             -HHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-
Confidence             11244566665443322211111111 1223333221 1233333333444566777788889999999999998744 


Q ss_pred             hHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHH-HHHHHHHHHHHH
Q 013318          325 SGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQ-LKVWQCASIAVV  402 (445)
Q Consensus       325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~-~~~~~~~g~~ig  402 (445)
                      ..+.++..++.............   ........++.+++.+...+..++++.|.+|.+.+ ++.++ ++....+|..++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~  396 (438)
T PRK09952        320 ITGALIGTLSAFPFFMALEAQSI---FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFT  396 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHH
Confidence            45544433332111111111111   12233445556777777777888999999998754 45564 445454565555


Q ss_pred             HHhhcch------hHHHHHHHHHHHHHHHHHHHHHH
Q 013318          403 FFIGPYI------SLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       403 ~~i~~~~------~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      +.+.+.+      ++...+....++.+++.+..+.+
T Consensus       397 p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        397 PFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            4443321      34455666666666776666544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.94  E-value=1.8e-23  Score=208.82  Aligned_cols=338  Identities=11%  Similarity=0.012  Sum_probs=213.2

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~  101 (445)
                      .++..+.+..+..+..........+.|.+.++.+.+....    +.......+++++.|++.||+|||+++..+.++..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            3444444444433333332233445666766666665443    344456677889999999999999999999998877


Q ss_pred             HHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          102 FVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       102 ~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      ..... ..++++.+++.|+++|++.+..++...+++.++.          |+++|+++.++.+...++|..+|++++..+
T Consensus        98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~----------~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l  167 (394)
T PRK10213         98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLV----------PPRTVPKALSVIFGAVSIALVIAAPLGSFL  167 (394)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55543 5788999999999999999999999999999987          467899999999999999999999999877


Q ss_pred             hcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHH
Q 013318          181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLL  259 (445)
Q Consensus       181 ~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  259 (445)
                      ...           .+||. .|.+.+++.++..+.. ..+|++++  +++  +    .    ++   +..+.+|+|+++.
T Consensus       168 ~~~-----------~gw~~-~f~~~~~l~~~~~l~~~~~~p~~~~--~~~--~----~----~~---~~~~~l~~~~~~~  220 (394)
T PRK10213        168 GEL-----------IGWRN-VFNAAAVMGVLCIFWIIKSLPSLPG--EPS--H----Q----KQ---NTFRLLQRPGVMA  220 (394)
T ss_pred             Hhh-----------cCHHH-HHHHHHHHHHHHHHHHHHHCCCCCc--ccc--c----c----hh---HHHHHhcCHHHHH
Confidence            533           36764 4444444433332222 22343211  110  0    0    01   1235677888765


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccc-cccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH
Q 013318          260 IIPLFAYSGLQQAFVWAEFTKEI-VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI  338 (445)
Q Consensus       260 l~~~~~~~g~~~~f~~~~~~~~~-~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~  338 (445)
                      .....+............+++.+ .+.+++.+..+..+..++++..+++++.|++.||.+ |+.++..+.+...+.++  
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~--  297 (394)
T PRK10213        221 GMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALV--  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHH--
Confidence            54332221111111122332322 234566677889899999999999999999999954 33233222222222222  


Q ss_pred             HhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          339 LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      +..+.++     ........+++|++.+..++..++.+.+..|++++.+.+.+....++|..+|..+.+.
T Consensus       298 l~~~~~~-----~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~  362 (394)
T PRK10213        298 LTLWGSD-----KIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGY  362 (394)
T ss_pred             HHHHhhh-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122322     2345567788899998888888888888888765555555555555666555555443

>PRK03699 putative transporter; Provisional

Probab=99.94  E-value=1.3e-23  Score=210.00  Aligned_cols=358  Identities=14%  Similarity=0.006  Sum_probs=220.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~  103 (445)
                      |-++...+++++..........+.|++.++.+++....    +..+..+.+++++.|++.||+|||+++.++.++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   86 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44444445555444444455566677777777765543    33445667888999999999999999999988777665


Q ss_pred             HHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhc
Q 013318          104 AAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (445)
Q Consensus       104 ~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~  182 (445)
                      ... ..+++..+++.|+++|++.+..++....++.++.          |+++|+++++..+....+|..++|++...+..
T Consensus        87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (394)
T PRK03699         87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVY----------EGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA  156 (394)
T ss_pred             HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhc----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            543 5688888999999999999988888788888876          46789999998888888888888877665542


Q ss_pred             CccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHH
Q 013318          183 DDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP  262 (445)
Q Consensus       183 ~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  262 (445)
                      ..          .+||. .|.+.+++.++..++.++.+.|+.+++++  +++   +..    .    +...+++++....
T Consensus       157 ~~----------~gw~~-~f~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~---~~~----~----~~~~~~~~~~~~~  212 (394)
T PRK03699        157 RS----------IEWYW-VYACIGLVYVAIFILTLFSEFPALGKHAP--KAD---KPV----A----KEKWGIGVLFLAI  212 (394)
T ss_pred             cc----------ccHHH-HHHHHHHHHHHHHHHHHhcCCccccccCc--ccc---Ccc----c----cccCChHHHHHHH
Confidence            21          36764 34444444333333333333232111111  000   000    0    1112344444333


Q ss_pred             HHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhh
Q 013318          263 LFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN  341 (445)
Q Consensus       263 ~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~  341 (445)
                      ..+...........+.|.++.+ .+++.++.+.+...++++..+++++.|++.||+++|+.+ .....+..+.+.  ...
T Consensus       213 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l-~~~~~~~~~~~~--~~~  289 (394)
T PRK03699        213 AALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL-TVLAGLALVLMY--LFV  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH-HHHHHHHHHHHH--HHH
Confidence            2222222111122445544433 356666788888899999999999999999999988744 343333333322  122


Q ss_pred             ccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHH
Q 013318          342 YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIV  417 (445)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i  417 (445)
                      ..++.     ....+..+++|++.+...+...+...+..|++++...+.......+|..+++.+.++    .++...+++
T Consensus       290 ~~~~~-----~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~  364 (394)
T PRK03699        290 NTDDP-----SHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLT  364 (394)
T ss_pred             HcCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhh
Confidence            23322     233445667788777777777777778777666556676666666777776655533    355566665


Q ss_pred             HHHHHHHHHH
Q 013318          418 MVVGICVALV  427 (445)
Q Consensus       418 ~~~~~~~~~~  427 (445)
                      .+++++++.+
T Consensus       365 ~~~~~~~~~~  374 (394)
T PRK03699        365 ANGLYAVVFV  374 (394)
T ss_pred             hHHHHHHHHH
Confidence            5555555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.94  E-value=9.5e-24  Score=209.93  Aligned_cols=354  Identities=16%  Similarity=0.161  Sum_probs=224.1

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHH----HHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGI----LYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~----~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      +.+|+++.+.++.++.-.+......+.|.+.++.+.+....+.    ......+++++.|++.||+|||+++..+.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466778887777776666666666777777777776654444    444556778899999999999999999998877


Q ss_pred             HHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHH
Q 013318          101 LFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (445)
Q Consensus       101 ~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~  179 (445)
                      +..... ..+++..+++.|+++|++.+..++...+.+.+..          ++++|++++|++....++|..+|++++..
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG----------TSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            655543 6789999999999999999998887666666654          46789999999999999999999988876


Q ss_pred             hhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHH
Q 013318          180 VLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLL  259 (445)
Q Consensus       180 l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  259 (445)
                      +.....           | ...+. ...+ ....+..++.+.+++.++++       +..       +..+.+|+|+++.
T Consensus       153 l~~~~~-----------~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~  204 (381)
T PRK03633        153 VSTELM-----------S-VLPWV-TGLV-LAAILPLLFTRILNQQAENH-------DST-------SIWPMLKLRQARL  204 (381)
T ss_pred             cccccc-----------c-hHHHH-HHHH-HHHHHHHHHhcccCCCCCCC-------CCC-------CHHHHHHhcchHH
Confidence            543211           1 11111 1111 11222223333222111110       001       1123456777664


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH
Q 013318          260 IIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL  339 (445)
Q Consensus       260 l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~  339 (445)
                      .....+..+.......+..|.+..+.+.+.+.+|.+.....++.+++++..|++.||+++|+ ++..+..+..++... .
T Consensus       205 ~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-~l~~~~~~~~~~~~~-~  282 (381)
T PRK03633        205 GVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL-VLRVQVFVVILGSIA-M  282 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH-HHHHHHHHHHHHHHH-H
Confidence            43323333332222223344444344566667888888899999999999999999999886 445555554444321 1


Q ss_pred             hhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch----hHHHH
Q 013318          340 INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI----SLQAM  414 (445)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~  414 (445)
                        .. .      ........++|++.....|...+...+..|+++ +.+.+.++...++|..+|+.+.+..    +..+.
T Consensus       283 --~~-~------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~  353 (381)
T PRK03633        283 --LS-Q------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL  353 (381)
T ss_pred             --hh-h------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence              11 1      122234456677666677888888888887654 4456676677777777776665433    45566


Q ss_pred             HHHHHHHHHHHHH
Q 013318          415 LIVMVVGICVALV  427 (445)
Q Consensus       415 ~~i~~~~~~~~~~  427 (445)
                      +.+.+.+.++..+
T Consensus       354 f~~~~~~~l~~~~  366 (381)
T PRK03633        354 FIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555554443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2.7e-24  Score=205.60  Aligned_cols=376  Identities=10%  Similarity=0.016  Sum_probs=247.1

Q ss_pred             hHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH
Q 013318           30 VHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA  105 (445)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~  105 (445)
                      ++...++...+|..+.+....+|.+.++.+++...    .+.++.+|+++.++.|.++||.++|+.+..|+++.++..+.
T Consensus        31 f~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil  110 (448)
T COG2271          31 FLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL  110 (448)
T ss_pred             HHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHH
Confidence            34555666777777777777888888777677654    46677889999999999999999999999999888776665


Q ss_pred             h-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHH--HHhhc
Q 013318          106 N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT--LAVLK  182 (445)
Q Consensus       106 ~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~--~~l~~  182 (445)
                      + +.++...+.+.=++.|.-+|.-||.....+++|.          +++|||+..++.+...++|..+-+++.  ..+..
T Consensus       111 ~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf----------sr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         111 FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF----------SRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc----------CccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            4 6789888888889999999999999999999998          468999999999999999998777666  33332


Q ss_pred             CccccccccCCCCCcchhHHHHHHHHHH-HHHHHHHhccCCccc---Cc-----cccccc--chhhh--hHHHHHHHHHH
Q 013318          183 DDKVCAALLGGSTSGTTLLFIVFLGVIT-LGTILMCFLRKEEDK---GE-----KETADA--SVNFY--SYLVSLSKSIT  249 (445)
Q Consensus       183 ~~~~~~~~~~~~~~w~~~~~~i~~~l~~-~~~~l~~~l~~~~~~---~~-----~~~~~~--~~~~~--~~~~~~~~~~~  249 (445)
                      +           .+||. .|++.+++++ +++++.+..+|+++.   ++     .|..+.  ++++.  -+.++.+.+  
T Consensus       181 ~-----------~~w~~-~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~--  246 (448)
T COG2271         181 H-----------GGWRA-AFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVK--  246 (448)
T ss_pred             c-----------cchhH-HHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHH--
Confidence            2           25765 4555555554 444455567764432   11     111111  11111  122333322  


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCC--CCccchHhH
Q 013318          250 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSG  326 (445)
Q Consensus       250 ~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~--g~~~~~i~~  326 (445)
                      ..+|||..|++....++.-+...-...|-|.++.+ ++++..+.......+-++.+.|+++.||++||+  |||.+..++
T Consensus       247 YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i  326 (448)
T COG2271         247 YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALI  326 (448)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHH
Confidence            36899999988775555444332222333333333 567777888888999999999999999999996  567654434


Q ss_pred             HHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHH-HHHHHHH
Q 013318          327 GAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCA-SIAVVFF  404 (445)
Q Consensus       327 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~-g~~ig~~  404 (445)
                      .++...++++  ..-..++.+   +.+..++++..|+....-+-.+-....|..|++. ++|.|...++..+ |++.+-.
T Consensus       327 ~~~~i~~~~~--~~w~~~~~~---~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~  401 (448)
T COG2271         327 FMLLITASLV--LYWLAPNGS---YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGL  401 (448)
T ss_pred             HHHHHHHHHH--HHHcCCCcc---HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCC
Confidence            3333333332  222233322   2445556666666544444444455667788774 4578888888888 6655422


Q ss_pred             hhcc----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          405 IGPY----ISLQAMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       405 i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                      .-++    .+....++++.+.++++.++++...+
T Consensus       402 ~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         402 PLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             cceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            2221    35555676666666666666655544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.94  E-value=8.3e-24  Score=213.35  Aligned_cols=352  Identities=10%  Similarity=0.052  Sum_probs=208.5

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      +++.....++.++....+.......|.+.++.+++...    .+.......+++++.|++.||+|||+++.++.+..++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~   96 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG   96 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            34555555555555555555555666666666665443    34455566788899999999999999999999888776


Q ss_pred             HHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       103 ~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                      .+.. ..+++..+++.|+++|+|.+..++....++.++.          ++++|+++.|++.....+|.++++.+...+.
T Consensus        97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307         97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESW----------PKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC----------CHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence            6654 6788999999999999999999999889999987          4678999999999988999988887766554


Q ss_pred             cCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHH
Q 013318          182 KDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII  261 (445)
Q Consensus       182 ~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  261 (445)
                      ..           .+||.. |.+.....++...+....|++++.++++.+++++..+...+.......+.+|+|++....
T Consensus       167 ~~-----------~~w~~~-f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (426)
T PRK12307        167 EA-----------YGWRAA-FFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTL  234 (426)
T ss_pred             cc-----------CCHHHH-HHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHH
Confidence            22           367643 332211111111111112222110000000000000001111111334566777765433


Q ss_pred             HHHHH-HHHHHH-H-HHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH
Q 013318          262 PLFAY-SGLQQA-F-VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI  338 (445)
Q Consensus       262 ~~~~~-~g~~~~-f-~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~  338 (445)
                      ..+.. ...... + ....++.++.+.+.+....+...+..+++.++++++.|++.||++||+. +..+.++..+.+.. 
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~~-  312 (426)
T PRK12307        235 CVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-FSIGLLMSFLFIFP-  312 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHH-
Confidence            22111 111111 1 1234444443345555667888888999999999999999999998874 45555554443321 


Q ss_pred             HhhccCCCCccchhHHHHHHHHHhh--hhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          339 LINYSVTSGVLGTLYPLIMAALLGI--GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~l~G~--~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      + ...++..    . ..+...++|.  ......+..+.++.+.+|++ ++.+.|+.+....+|..+++.+.+.
T Consensus       313 ~-~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~  379 (426)
T PRK12307        313 L-FRIPQDN----Y-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATW  379 (426)
T ss_pred             H-HHHcccc----H-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence            1 1122211    1 1122223333  22233455667888999976 4557887777777777777666543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.93  E-value=5e-23  Score=204.86  Aligned_cols=361  Identities=12%  Similarity=0.040  Sum_probs=216.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~  103 (445)
                      ++++.+.+..++............|.+.+|.+.+...    .+.....+.+++++.|++.||+|||+++..+..+.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            4555555665555555445555666666666655433    455566778899999999999999999999998887766


Q ss_pred             HHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhc
Q 013318          104 AAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (445)
Q Consensus       104 ~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~  182 (445)
                      +.. ..++++.+++.|++.|++.+...+....++.++.          ++++|++++|++.....+|..+|++++..+..
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII----------KPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------ChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            554 6789999999999999999988887777787776          46789999999999899999999988776643


Q ss_pred             CccccccccCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHH
Q 013318          183 DDKVCAALLGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII  261 (445)
Q Consensus       183 ~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  261 (445)
                      .           .+||. .|.+.+++..+..+. ..++|++++++++     +      .++    ..+.+|+++.+...
T Consensus       153 ~-----------~gwr~-~f~~~~~~~~~~~~~~~~~lp~~~~~~~~-----~------~~~----~~~~~~~~~~~~~~  205 (382)
T PRK10091        153 E-----------FSWRY-TFLLIAVFNIAVLASIYFWVPDIRDEAKG-----G------LRE----QFHFLRSPAPWLIF  205 (382)
T ss_pred             h-----------ccHHH-HHHHHHHHHHHHHHHHHHhCCCCCccccc-----C------HHH----HHHHhcChHHHHHH
Confidence            2           35764 455544444433332 2345553221110     0      011    12456777766543


Q ss_pred             HHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHh
Q 013318          262 PLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI  340 (445)
Q Consensus       262 ~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~  340 (445)
                      ...+........+.+..++++.+ .+.+.++.++.....+++.++++++.|++.||+++|+. +..+..+..++.+. +.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-~~~~~~~~~i~~~~-~~  283 (382)
T PRK10091        206 AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-AAVTDFIIVLALLM-LF  283 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-HHHHHHHHHHHHHH-HH
Confidence            32222111111112223333322 35566678888899999999999999999999998774 34555444444321 11


Q ss_pred             hccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHH-----hhcchhHHHHH
Q 013318          341 NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFF-----IGPYISLQAML  415 (445)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~-----i~~~~~~~~~~  415 (445)
                      ...++     .....++.++.+.+.....+.......+..++++..+.+..+....+|.++|+.     ++...++.+.+
T Consensus       284 ~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~  358 (382)
T PRK10091        284 FFGGM-----KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVA  358 (382)
T ss_pred             HHHhh-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHH
Confidence            12222     123333444455554444443333333333333222222234444555555443     33345677777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013318          416 IVMVVGICVALVGILFL  432 (445)
Q Consensus       416 ~i~~~~~~~~~~~~~~~  432 (445)
                      .+.++++.++.......
T Consensus       359 ~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        359 LPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77666555555444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.93  E-value=1.3e-23  Score=213.72  Aligned_cols=355  Identities=9%  Similarity=-0.051  Sum_probs=205.5

Q ss_pred             hHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hh----cchhhHHhH
Q 013318           47 AQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF----PSWYTMVPA  117 (445)
Q Consensus        47 ~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~----~~~~~li~~  117 (445)
                      .....|.+.++ +++....    +.....+++++++.|++.||+|+|+++.++.++..+..+.. +.    +++..+++.
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  126 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  126 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence            34455666655 6665443    44455667889999999999999999999988776655443 22    367778889


Q ss_pred             HHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhh-hhhHHHHHhhcCccccccccCCCCC
Q 013318          118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQF-VGNLITLAVLKDDKVCAALLGGSTS  196 (445)
Q Consensus       118 r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~-iG~li~~~l~~~~~~~~~~~~~~~~  196 (445)
                      |++.|++.+..++...+.+.++.          ++++||+++|+++...++|.. .|+++...+...           .+
T Consensus       127 ~~l~gi~~g~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----------~g  185 (452)
T PRK11273        127 LFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF-----------ND  185 (452)
T ss_pred             HHHHHHHHhccchHHHHHHHHhC----------ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-----------cc
Confidence            99999999998887777788876          467899999999888888864 455543333211           25


Q ss_pred             cchhHHHHHHHHHHHHHH-HHHhccCCcccC---cc-cc-c---cc---chhhhhHHHHHHHHHHHhhccchhHHHHHHH
Q 013318          197 GTTLLFIVFLGVITLGTI-LMCFLRKEEDKG---EK-ET-A---DA---SVNFYSYLVSLSKSITTLLADVRMLLIIPLF  264 (445)
Q Consensus       197 w~~~~~~i~~~l~~~~~~-l~~~l~~~~~~~---~~-~~-~---~~---~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  264 (445)
                      ||. .|.+.+++.++..+ ..+++||++++.   ++ +. +   +.   +..++.+.++.++  ...+|+|.++......
T Consensus       186 w~~-~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~  262 (452)
T PRK11273        186 WHA-ALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFM--QYVLPNKLLWYIAIAN  262 (452)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHH--HHHHcChHHHHHHHHH
Confidence            764 45555554444333 345667643321   00 00 0   00   0000001111111  2356788887655444


Q ss_pred             HHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCC--CccchHhHHHHHHHHHHHHHHhh
Q 013318          265 AYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLP--SITFIVSGGAIAQVVVFLWILIN  341 (445)
Q Consensus       265 ~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g--~~~~~i~~g~~~~~~~~~~~~~~  341 (445)
                      ++..........++|.++.+ .+++.++.+.....+.++.++++++.|+++||++  ||.........+..+...  ...
T Consensus       263 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~--~~~  340 (452)
T PRK11273        263 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI--VYW  340 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHH--HHH
Confidence            33332222223455655543 3566677888888889999999999999999984  443222122222222221  111


Q ss_pred             ccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHH-HHHhhc----chhHHHHH
Q 013318          342 YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAV-VFFIGP----YISLQAML  415 (445)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~i-g~~i~~----~~~~~~~~  415 (445)
                      ..+...   .....+..++.|...........++..+.+|++ ++++.|+.+....+|..+ ++.+.+    ..++...+
T Consensus       341 ~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f  417 (452)
T PRK11273        341 LNPAGN---PTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  417 (452)
T ss_pred             HhcccC---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHH
Confidence            111111   122223333344432222233345667888876 556888888777666543 444432    34567777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013318          416 IVMVVGICVALVGILF  431 (445)
Q Consensus       416 ~i~~~~~~~~~~~~~~  431 (445)
                      .++.++++++++....
T Consensus       418 ~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        418 MVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777766666655543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.93  E-value=4.3e-23  Score=204.79  Aligned_cols=344  Identities=14%  Similarity=0.042  Sum_probs=217.0

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      ++.++.+++..+....+........|.+.++.+.+...    .+.......+++++.|++.||+|||+++..+..+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            33444444444443444444445556666666665543    33444456778889999999999999999998877766


Q ss_pred             HHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       103 ~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                      .... ..+++..+++.|++.|++.+...+...+++.|+.          |+++|++.+|+......+|..+|+.++..+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIY----------PGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544 5788888999999999999999999999999887          4678999999999999999999998887665


Q ss_pred             cCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHH
Q 013318          182 KDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI  260 (445)
Q Consensus       182 ~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  260 (445)
                      .+           .+||. .+.+.+++.++..++. ++.||++++++++  +     .   ++..++..+.+|+|+++..
T Consensus       154 ~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~---~~~~~~~~~~~~~~~~~~~  211 (385)
T TIGR00710       154 VW-----------LSWHA-IFAFLSLAGILLSALIFFILPETLPYEARI--Q-----I---STYFETFLLLLKSKMFWGY  211 (385)
T ss_pred             HH-----------cCHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCcccC--C-----H---HHHHHHHHHHHcCchhHHH
Confidence            33           25653 3444444444433333 3445433211110  0     0   1112234456788887765


Q ss_pred             HHHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH
Q 013318          261 IPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL  339 (445)
Q Consensus       261 ~~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~  339 (445)
                      ..................+.++. ..+.+.++.+.+....+++.++++++.|++.||+++|+.+ ..+..+..++.++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~  290 (385)
T TIGR00710       212 ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL-RMGLILFAVSAVLLE  290 (385)
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHH
Confidence            43322211111111122232222 2345666788888889999999999999999999988743 445444443322111


Q ss_pred             h-hccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHH-HHHHHHHhh
Q 013318          340 I-NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCA-SIAVVFFIG  406 (445)
Q Consensus       340 ~-~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~-g~~ig~~i~  406 (445)
                      . ...+...   ........++.|++.+...+.......+..|++++++.++++..+.. |...++.++
T Consensus       291 ~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       291 ITAILGLGS---WAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1111111   12344556678888888888878888888887777788887777654 444555444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10133 L-fucose transporter; Provisional

Probab=99.93  E-value=2.5e-23  Score=210.47  Aligned_cols=357  Identities=12%  Similarity=0.082  Sum_probs=221.9

Q ss_pred             cccccCcccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhh
Q 013318           17 SLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNAL   92 (445)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l   92 (445)
                      +||..+.+++...++.+.+.++..-........+.|.+.++.+++...    .+..+..+++++++.|++.||+|||+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l   94 (438)
T PRK10133         15 DKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI   94 (438)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            445566666777778887777777666666667778887667776654    3445556778899999999999999999


Q ss_pred             hhhhHHHHHHHHHh----hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHH
Q 013318           93 ILGTTGYWLFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS  168 (445)
Q Consensus        93 ~~g~~~~~~~~~~~----~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~l  168 (445)
                      ..+..++.+..+.+    ..+++..+++.|+++|+|.|..+++.+.++.++.          ++++|++.+++++..+.+
T Consensus        95 ~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~----------~~~~~~~~~s~~~~~~~~  164 (438)
T PRK10133         95 ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSF  164 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------ChhhHHHHHHHHHHHHHH
Confidence            99999887766542    4689999999999999999999999999998775          345666679999999999


Q ss_pred             hhhhhhHHHHHhh-cCccc-cccc---c--CCC--------CCcchhHHHHHHHHHHHHHHHHHhccCCcccCccccccc
Q 013318          169 HQFVGNLITLAVL-KDDKV-CAAL---L--GGS--------TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADA  233 (445)
Q Consensus       169 g~~iG~li~~~l~-~~~~~-~~~~---~--~~~--------~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~  233 (445)
                      |..+|++++..+. ...+. +.+.   .  ...        .+||. .|.....+..+..++..+.+.|+.+++++ .+ 
T Consensus       165 G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~-~f~~~~~v~~~~~~~~~~~~~p~~~~~~~-~~-  241 (438)
T PRK10133        165 GAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQT-PYMIIVAIVLLVALLIMLTKFPALQSDNH-SD-  241 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCcccc-cc-
Confidence            9999998876543 11100 0000   0  000        12332 22221212211122222222232211111 00 


Q ss_pred             chhhhhHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHhhhcccccc--cccccchhHHHHHHHHHHHHHHHhhh
Q 013318          234 SVNFYSYLVSLSKSITTLLADVRMLLIIPL-FAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAICSLAA  310 (445)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~g~~~~f~~~~~~~~~~~--~~~~~~~~g~~~~~~~i~~~~g~~~~  310 (445)
                       . +..+   ..++..+.+|+|+++..... +++.+.+.+.+ .+.+.++.+  .+++....+..+..++++..+|+++.
T Consensus       242 -~-~~~~---~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~  315 (438)
T PRK10133        242 -A-KQGS---FSASLSRLARIRHWRWAVLAQFCYVGAQTACW-SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTG  315 (438)
T ss_pred             -c-cccc---hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             0 0001   11233456788887644332 23333332222 233333222  35566678999999999999999999


Q ss_pred             hccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHH
Q 013318          311 GRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQ  390 (445)
Q Consensus       311 G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~  390 (445)
                      |++.||+++|+. +..+.++..+.+.. . .+.++.      ..+....++|++.+...|..++...+..|++.+.+.++
T Consensus       316 g~l~~r~g~~~~-l~~~~~~~~~~~~~-~-~~~~~~------~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l  386 (438)
T PRK10133        316 TWLISRFAPHKV-LAAYALIAMALCLI-S-AFAGGH------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSF  386 (438)
T ss_pred             HHHHHHcCHHHH-HHHHHHHHHHHHHH-H-HHcCCh------HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhH
Confidence            999999998874 44555444433321 1 222221      22445677899999999999999999888765555554


Q ss_pred             HHHHHHHHHHHH
Q 013318          391 LKVWQCASIAVV  402 (445)
Q Consensus       391 ~~~~~~~g~~ig  402 (445)
                      .. .+..|..++
T Consensus       387 ~~-~~~~g~~~~  397 (438)
T PRK10133        387 IV-MTIIGGGIV  397 (438)
T ss_pred             Hh-HHhccchHH
Confidence            43 233444333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.93  E-value=5.5e-23  Score=206.19  Aligned_cols=328  Identities=13%  Similarity=0.051  Sum_probs=207.0

Q ss_pred             hhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHH
Q 013318           46 AAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLY  120 (445)
Q Consensus        46 ~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l  120 (445)
                      ..+...+.+.++.+.+...    .+.....+.+++++.|++.||+|||+++.++.....+..... ..+++..++..|++
T Consensus        31 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  110 (406)
T PRK15402         31 MIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFL  110 (406)
T ss_pred             hHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            3334445555555655433    344555667788899999999999999999988776655543 57888889999999


Q ss_pred             hhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchh
Q 013318          121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTL  200 (445)
Q Consensus       121 ~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~  200 (445)
                      +|++.+..++...+++.++.          ++++|++..++......++..+||+++..+..+           .+||. 
T Consensus       111 ~G~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----------~~w~~-  168 (406)
T PRK15402        111 QGIGLCFIGAVGYAAIQESF----------EEADAIKITALMANVALLAPLLGPLVGAALIHV-----------LPWRG-  168 (406)
T ss_pred             HHhHhhhHHHHHHHHHHHHh----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------cCccH-
Confidence            99999988888788888886          467888989988888888889999888766532           25764 


Q ss_pred             HHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhc
Q 013318          201 LFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  279 (445)
Q Consensus       201 ~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~  279 (445)
                      .+.+.+++.++..+.. ..+||++++++++  +       +.++..++..+.+|+|+++.......+.+.....+....|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  239 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMPETAGRVGEK--L-------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSP  239 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcccccc--c-------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4555555554444333 3355432211111  0       0111223345677888887655444333332222222233


Q ss_pred             cccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhc-cCCCCccchhHHHHH
Q 013318          280 KEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINY-SVTSGVLGTLYPLIM  357 (445)
Q Consensus       280 ~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  357 (445)
                      .++. ..+.+..+.+.......++..+++++.|++.||.++|+. +..+.++..++..+..... .+...   +....+.
T Consensus       240 ~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~  315 (406)
T PRK15402        240 VILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL-IRMGLWPMVAGLLLAALATVISSHA---YLWLTAG  315 (406)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHHHccccc---HHHHHHH
Confidence            3221 134444567777777778889999999999999998764 4556555444432111111 11111   2334566


Q ss_pred             HHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          358 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       358 ~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      .+++|++.+...+..+.......|++++++.+.+++.+..|..+|..+.+.
T Consensus       316 ~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~  366 (406)
T PRK15402        316 LSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKH  366 (406)
T ss_pred             HHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777888887777666555544455567778888888888888777666543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.93  E-value=6.3e-24  Score=210.41  Aligned_cols=366  Identities=13%  Similarity=0.042  Sum_probs=224.3

Q ss_pred             HHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhh
Q 013318           39 LIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYT  113 (445)
Q Consensus        39 ~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~  113 (445)
                      +.+.+........|.+.++.+.+...    .+.......+++++.|++.||+|||+++.++.++..+..... ..+++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   84 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS   84 (399)
T ss_pred             HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence            34445445555566666665655543    344444566788899999999999999999988777666554 5789999


Q ss_pred             HHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCC
Q 013318          114 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGG  193 (445)
Q Consensus       114 li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~  193 (445)
                      +++.|++.|+|.+..++....++.++.          |+++|++.+|+......+|..+|+.++..+...          
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----------  144 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWF----------PASERATAVSIFNSAQGLGGIIGGPLVGWILIH----------  144 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhC----------CHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh----------
Confidence            999999999999999999999999997          467899999999999999999999888766533          


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcc-cccccc--h-h------hhhHHHHHHHHHHHhhccchhHHHHH
Q 013318          194 STSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEK-ETADAS--V-N------FYSYLVSLSKSITTLLADVRMLLIIP  262 (445)
Q Consensus       194 ~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~-~~~~~~--~-~------~~~~~~~~~~~~~~~l~~~~~~~l~~  262 (445)
                       .+||. .|.+.+++.++..++. ++.|+++++++. +.++++  . .      .+.+.++..+...+.+|+|+++....
T Consensus       145 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (399)
T TIGR00893       145 -FSWQW-AFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLAL  222 (399)
T ss_pred             -CCchH-HHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHH
Confidence             24653 4444444444333333 334543321111 000000  0 0      00000011123445678888776655


Q ss_pred             HHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHH-HHHHH--HHHHH
Q 013318          263 LFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA-IAQVV--VFLWI  338 (445)
Q Consensus       263 ~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~-~~~~~--~~~~~  338 (445)
                      ..+............++.++.+ .+.+..+.+......+++.++++++.|++.||+++|+..+.... .....  .....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T TIGR00893       223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL  302 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence            4444333332333344433322 24445567888889999999999999999999998752111111 11111  01000


Q ss_pred             HhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hh-HH
Q 013318          339 LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----IS-LQ  412 (445)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~-~~  412 (445)
                      .........    ....+...+.+.......+..++++.+.+|++ ++.++|+++....+|..+++.+.+.    .+ +.
T Consensus       303 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~  378 (399)
T TIGR00893       303 MFATNYVNI----PYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFA  378 (399)
T ss_pred             HHHhccchh----HHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchh
Confidence            111111111    12222222333333336788889999999876 4557899999888888877666543    23 66


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013318          413 AMLIVMVVGICVALVGIL  430 (445)
Q Consensus       413 ~~~~i~~~~~~~~~~~~~  430 (445)
                      ..+.+.+++.+++.+.++
T Consensus       379 ~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       379 GALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            677777776666665554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=1.8e-23  Score=215.10  Aligned_cols=346  Identities=13%  Similarity=0.062  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhccCCCCchH----HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-
Q 013318           32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-  106 (445)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-  106 (445)
                      .+.++.++...+........|++.++.+.+..    ..+.....+++++++.|++.||+|||++++++..++.+..+.+ 
T Consensus        10 ~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~   89 (495)
T PRK14995         10 IIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA   89 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            33344444444433444556777666555432    2344455667888999999999999999999999888766654 


Q ss_pred             hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccc
Q 013318          107 LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKV  186 (445)
Q Consensus       107 ~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~  186 (445)
                      ..+++..+++.|+++|+|.+...+.....+.+..+         ++++|++++|++.....+|..+||+++..+..+   
T Consensus        90 ~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~---------~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---  157 (495)
T PRK14995         90 FSPTASWLIATRALLAIGAAMIVPATLAGIRATFT---------EEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---  157 (495)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Confidence            67999999999999999999988877777766642         467899999999999999999999999887643   


Q ss_pred             cccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccch-------------------hhhhHH-----
Q 013318          187 CAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASV-------------------NFYSYL-----  241 (445)
Q Consensus       187 ~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~-------------------~~~~~~-----  241 (445)
                              .+||. .|.+...+.++..++. +++|+++++++++.+....                   ......     
T Consensus       158 --------~gwr~-~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  228 (495)
T PRK14995        158 --------FYWGS-VFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLT  228 (495)
T ss_pred             --------CChHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence                    35764 4555555554444433 4566533221111110000                   000000     


Q ss_pred             ------------HHHHH-----HHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHH
Q 013318          242 ------------VSLSK-----SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFD  303 (445)
Q Consensus       242 ------------~~~~~-----~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~  303 (445)
                                  ..+.+     -..+++|+|.+.......+..+....-....++.++. ..+.+..+.|+.+..++++.
T Consensus       229 ~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~  308 (495)
T PRK14995        229 LLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVAS  308 (495)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                        00000     0125677777655444333333322111122333321 24566678999999999999


Q ss_pred             HHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC
Q 013318          304 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD  383 (445)
Q Consensus       304 ~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~  383 (445)
                      .+++++.|++.||+++|+ ++..|.++..++..+.. ....+.+   ....+...++.|++.+...+.......+..|++
T Consensus       309 ~~~~~~~g~l~~r~g~~~-~~~~g~~~~~~~~~~l~-~~~~~~~---~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~  383 (495)
T PRK14995        309 GFSGPIAGILVSRLGLRL-VATGGMALSALSFYGLA-MTDFSTQ---QWQAWGLMALLGFSAASALLASTSAIMAAAPPE  383 (495)
T ss_pred             HHHHHHHHHHHHHcCchH-HHHHHHHHHHHHHHHHH-HhcCCCc---hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999876 55667666555443211 1222222   133455677889998888877777777778766


Q ss_pred             ch-hhHHHHHHHHHHHHHHHH
Q 013318          384 TE-GAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       384 ~~-~a~~~~~~~~~~g~~ig~  403 (445)
                      ++ .+.+++++.+.+|.++|.
T Consensus       384 ~~g~~~~~~~~~~~lG~~~G~  404 (495)
T PRK14995        384 KAAAAGAIETMAYELGAGLGI  404 (495)
T ss_pred             hcchHHHHHHHHHHHHHHHHH
Confidence            44 577888888888876653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.93  E-value=4.1e-23  Score=206.53  Aligned_cols=359  Identities=14%  Similarity=0.088  Sum_probs=219.1

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhh-hccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      |-++++..+.+..+..+.+......+.|. +.++.+.+....    +..+..+++++++.|++.||+||||++..+.+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            44667777777777766665555555554 445566665543    4444566788899999999999999999998766


Q ss_pred             HHHHHHh----hh-----cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhh
Q 013318          100 WLFVAAN----LF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ  170 (445)
Q Consensus       100 ~~~~~~~----~~-----~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~  170 (445)
                      .+.....    ..     .++..+++.|+++|+|.+..+++..+++.++.          ++++|++++|+.......|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~  161 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV----------GALHTGRVISWNGIATYGAL  161 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc----------ChhhhccchhhhhhhhhHHH
Confidence            5533221    12     24567888999999999999998888888876          46789999999988889999


Q ss_pred             hhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccC-CcccCcccccccchhhhhHHHHHHHHHH
Q 013318          171 FVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRK-EEDKGEKETADASVNFYSYLVSLSKSIT  249 (445)
Q Consensus       171 ~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (445)
                      ++|+.++..+..+           .+|+. .+.+..   .+..+..++.++ |++.++++  +     +.+.++..++  
T Consensus       162 ~~g~~l~~~l~~~-----------~g~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~--  217 (399)
T PRK05122        162 AIGAPLGVLLYHW-----------GGLAG-LGLLIM---LLALLGLLLARPRPAVPPVKG--E-----RLPFRRVLGR--  217 (399)
T ss_pred             HHHHHHHHHHHHc-----------ccHHH-HHHHHH---HHHHHHHHHHhcCCCCCCCCc--c-----chhHHHHHHH--
Confidence            9999988776543           25653 232222   222222223332 22111110  0     1111111111  


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHH
Q 013318          250 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAI  329 (445)
Q Consensus       250 ~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~  329 (445)
                             .+..........+.........+.++.+.+  .+..+.....++++.++++++.|++.||+++|+. ...+..
T Consensus       218 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~  287 (399)
T PRK05122        218 -------VWPYGMGLALASIGFGTIATFITLYYAARG--WDGAALALTLFGVAFVGARLLFGNLINRLGGLRV-AIVSLL  287 (399)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cccchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence                   111111111111111111122222222222  2445666678888999999999999999998774 445555


Q ss_pred             HHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhc-
Q 013318          330 AQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP-  407 (445)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~-  407 (445)
                      +..++..  .....++     ....++..+++|++.+...+.......+..|++ +++++|+++....+|..++..+.+ 
T Consensus       288 ~~~~~~~--~~~~~~~-----~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  360 (399)
T PRK05122        288 VEILGLL--LLWLAPS-----PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGL  360 (399)
T ss_pred             HHHHHHH--HHHHhcc-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444432  1222322     234456677889988888777777777888766 456888888888877665544433 


Q ss_pred             ---chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          408 ---YISLQAMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       408 ---~~~~~~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                         ..++...+.+.+++++++.+......+
T Consensus       361 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        361 VASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               345777777777777777666554443

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=6.3e-23  Score=204.72  Aligned_cols=363  Identities=14%  Similarity=0.118  Sum_probs=225.1

Q ss_pred             cccCcccccchhHHHHHHHHHHHHHHhhhHhhhhh-hccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhh
Q 013318           19 QVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALI   93 (445)
Q Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~   93 (445)
                      |.|++++.++..+.+.++.++.+.+.....++.|. +.+|.+.+....    +..+...++++++.|+++||+||||+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~   85 (392)
T PRK12382          6 QTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL   85 (392)
T ss_pred             cCcCCCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH
Confidence            45566667777777777777766665555555553 445556665443    4444556778899999999999999999


Q ss_pred             hhhHHHHHHHHH----hh-----hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHH
Q 013318           94 LGTTGYWLFVAA----NL-----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWG  164 (445)
Q Consensus        94 ~g~~~~~~~~~~----~~-----~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~  164 (445)
                      .+.+...+..+.    ..     .+++..+++.|+++|+|.+..+++..+++.++.          |+++|++++|+...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~a~~~~~~  155 (392)
T PRK12382         86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV----------GPKHSGKVMSWNGM  155 (392)
T ss_pred             HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------CccccchhhhHHHH
Confidence            988765443221    11     257788889999999999999988888888876          57899999999998


Q ss_pred             HHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccC-CcccCcccccccchhhhhHHHH
Q 013318          165 MFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRK-EEDKGEKETADASVNFYSYLVS  243 (445)
Q Consensus       165 ~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~  243 (445)
                      ....|..+|++++..+...           .+|+. .+.+.   .++..+..++.++ |+++++++  +     +++.++
T Consensus       156 ~~~~g~~~g~~~~~~l~~~-----------~g~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~  213 (392)
T PRK12382        156 AMYGALAAGAPLGLLLHSH-----------FGFAA-LALTT---MVLPLLAWAFNGTVRKVPAHAG--E-----RPSLWS  213 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhc-----------cChHH-HHHHH---HHHHHHHHHHHHhccCCCCCcc--c-----CchHHH
Confidence            8889999999988766532           35653 22221   1222222222222 22111111  0     111122


Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccch
Q 013318          244 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFI  323 (445)
Q Consensus       244 ~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~  323 (445)
                      ..    +.++.+.+....     .+..........+.++.+.  +.++.+.....++++.++++++.|++.||+++|+.+
T Consensus       214 ~~----~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~  282 (392)
T PRK12382        214 VV----GLIWKPGLGLAL-----QGVGFAVIGTFVSLYFASK--GWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA  282 (392)
T ss_pred             HH----HHHHHhHHHHHH-----HHHHHhHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh
Confidence            11    222222221111     1111111112222222222  334556666778888899999999999999988744


Q ss_pred             HhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHH
Q 013318          324 VSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVV  402 (445)
Q Consensus       324 i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig  402 (445)
                       ..+..+..++++.  ....++     ....++..+++|++.+...+...+...+.+|++ +++++|+++....+|..++
T Consensus       283 -~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig  354 (392)
T PRK12382        283 -IVSLLVETVGLLL--LWLAPT-----AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVS  354 (392)
T ss_pred             -HHHHHHHHHHHHH--HHHccc-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence             4555555554432  223322     234556677888888888787788888888765 5568899888888887777


Q ss_pred             HHhhcc----hhHHHHHHHHHHHHHHHHHHHHHH
Q 013318          403 FFIGPY----ISLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       403 ~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      ..+.+.    .++...+.+.+++.+++.+..++.
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            655543    356777777777777766655433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=6.7e-23  Score=202.42  Aligned_cols=339  Identities=11%  Similarity=0.057  Sum_probs=203.9

Q ss_pred             HhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhh-hcchhhHHhHHHHhh
Q 013318           48 QNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL-FPSWYTMVPASLYLG  122 (445)
Q Consensus        48 ~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~-~~~~~~li~~r~l~G  122 (445)
                      +.+.|.+.+|.+++...    .+.++..+++++++.|++.||+|||+++..+............ .+++..+++.|+++|
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G   90 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA   90 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34555665555555443    3445667889999999999999998876655443333322222 378999999999999


Q ss_pred             hhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHH
Q 013318          123 FAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLF  202 (445)
Q Consensus       123 ig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~  202 (445)
                      +|++... .....++++.          |++||++++++.+....+|.++|++++..+..+           .+||. .|
T Consensus        91 ~g~~~~~-~~~~~~~~~~----------~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-----------~gWr~-~f  147 (368)
T TIGR00903        91 LGQPFLL-NAFAPAASQI----------REERRDLVISLLSFAMYLGIIFALAAGLKIYTA-----------GGLQL-LI  147 (368)
T ss_pred             hHhHHHH-HHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------cchHH-HH
Confidence            9999754 4455567776          578999999999999999999999888877532           36874 45


Q ss_pred             HHHHHHHHHHHHH-HHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccc
Q 013318          203 IVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKE  281 (445)
Q Consensus       203 ~i~~~l~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~  281 (445)
                      .+.+++.++..++ .+++||+++.+++.   .+  . +   +..++..+++|+|+++.+....+..........++.|++
T Consensus       148 ~~~~~l~~~~~~~~~~~lp~~p~~~~~~---~~--~-~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~  218 (368)
T TIGR00903       148 IPIAAVAAAGIILVLAALPALPFQAAEG---FG--F-K---DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAA  218 (368)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCC---cc--h-H---HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555444333 35677643322111   00  0 0   112245567889998877654444333222334567766


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCc---cchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHH
Q 013318          282 IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSI---TFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMA  358 (445)
Q Consensus       282 ~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~---~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (445)
                      +.+.+++.+ .+.......+...++   .++++||..||   +.......++.++...  ...+.++.     .......
T Consensus       219 L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~--~~~~~~~~-----~~~~~~~  287 (368)
T TIGR00903       219 LRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFL--ALAFELNR-----LALFAFI  287 (368)
T ss_pred             HHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHH--HHHHcccc-----HHHHHHH
Confidence            644445543 455555555555555   36777776543   3222222222222221  12223221     2233344


Q ss_pred             HHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhc-ch-hHHHHHHHHHHHHHHHHHHH
Q 013318          359 ALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP-YI-SLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       359 ~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~-~~-~~~~~~~i~~~~~~~~~~~~  429 (445)
                      .+.+++.....+..+++.+|.+|++ ++++.|+.+....+|..+++.+.+ .. +....+.++++..+++.+..
T Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            4455555555566778999999986 556888888887777755543332 22 55666777777666666554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.93  E-value=2.8e-22  Score=200.13  Aligned_cols=339  Identities=14%  Similarity=0.051  Sum_probs=205.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~  103 (445)
                      |++..+.++.++...+-.......+.+..+.+.+...    .+.....+++.+++.|++.||+|||++++++..++.+..
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~   82 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGC   82 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHH
Confidence            4555566665554433222222222333333333322    344455778889999999999999999999998876655


Q ss_pred             HHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhc
Q 013318          104 AAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (445)
Q Consensus       104 ~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~  182 (445)
                      +.+ ..++.   +..|+++|++.+..+|+..+++.++.          |+++|+++.|+.....+.|.++||.+++.+..
T Consensus        83 ~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~----------~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         83 LLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELL----------PGEKLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543 33443   56899999999999999999999998          46899999999999999999999999887753


Q ss_pred             CccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHH
Q 013318          183 DDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP  262 (445)
Q Consensus       183 ~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  262 (445)
                      .            .|+. .+.+...+.+++.+....+|++++++++. ++ +  .....++......+++|+|.+.....
T Consensus       150 ~------------~~~~-~~~i~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~  212 (393)
T PRK11195        150 P------------HAEA-ALAVCALIYLLAALFNLFIPRLGARRPGQ-SW-N--PIALLRDFFHACRVLWRDKLGRFSLA  212 (393)
T ss_pred             H------------HHHH-HHHHHHHHHHHHHHHHhcCCCCccccccc-CC-C--HHHHHHHHHHHHHHHHhCchhHHHHH
Confidence            2            1332 23232322233333334566543211111 00 0  00001111112234567776653332


Q ss_pred             HHHH-HHHHH--HHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH
Q 013318          263 LFAY-SGLQQ--AFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL  339 (445)
Q Consensus       263 ~~~~-~g~~~--~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~  339 (445)
                      .... .+...  .+....+.+..  -+.+..+.|++.+..+++.+++++..+++.||.++++ ++..+..+. ....  .
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~--lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~-~~~~g~~~~-~~~~--~  286 (393)
T PRK11195        213 GTTLFWGAGATLRFLVLAWAPVA--LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR-VLPAGILMG-LVVL--L  286 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-hHHHHHHHH-HHHH--H
Confidence            2111 11111  11111111111  2455667899999999999999999999999988765 444554332 2211  1


Q ss_pred             hhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc--hhhHHHHHHHHHHHHHHHHHhhc
Q 013318          340 INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT--EGAFAQLKVWQCASIAVVFFIGP  407 (445)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~--~~a~~~~~~~~~~g~~ig~~i~~  407 (445)
                      ....++     +....+..+++|++.+...+..++.+.+..|+|.  +.+.|+.++.+.++..++..+..
T Consensus       287 ~~~~~~-----~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~  351 (393)
T PRK11195        287 MALQHS-----LLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS  351 (393)
T ss_pred             HHHHhH-----HHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH
Confidence            222222     2334456667888888877777888888766654  45788999999988777665543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.93  E-value=3.2e-23  Score=218.69  Aligned_cols=166  Identities=10%  Similarity=0.001  Sum_probs=118.3

Q ss_pred             hHhhhhhhccCCCCchH----HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHh
Q 013318           47 AQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYL  121 (445)
Q Consensus        47 ~~~~~~~i~~~~~~g~~----~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~  121 (445)
                      ...+.|.+..+.+++..    ..++.+....+++++.|+++||+|||++++++.+++++..+.. +.+++..+++.|++.
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~  265 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLS  265 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44566666555555442    2455666778899999999999999999999988877766543 678899999999999


Q ss_pred             hhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcc--ccccccCCCCCcch
Q 013318          122 GFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--VCAALLGGSTSGTT  199 (445)
Q Consensus       122 Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~--~~~~~~~~~~~w~~  199 (445)
                      |+|.|...+...++++++.          |+++||+.+++..++..+|.++++.++..+....+  .+........+||.
T Consensus       266 G~g~g~~~p~~~~~isE~~----------p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~  335 (742)
T TIGR01299       266 GFGIGGAIPIVFSYFAEFL----------AQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV  335 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence            9999999999999999998          46789999999999999999999887765542211  00000001236764


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCCc
Q 013318          200 LLFIVFLGVITLGTILMCFLRKEE  223 (445)
Q Consensus       200 ~~~~i~~~l~~~~~~l~~~l~~~~  223 (445)
                       ++.+.++..++.+++.+++||++
T Consensus       336 -l~~i~~lp~ll~ll~~~~lPESP  358 (742)
T TIGR01299       336 -FVIVCAFPCVFAIGALTFMPESP  358 (742)
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCH
Confidence             44444444444444456788754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.93  E-value=2.2e-22  Score=200.93  Aligned_cols=346  Identities=14%  Similarity=0.035  Sum_probs=210.1

Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           24 KNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      +|.+|..++..+...+.........+..|.+.++.+.+...    .+.....+.+++++.|+++||+|||+++.++..+.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          4 QRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            34555555554444443433333334556666666665543    34444466778899999999999999999998877


Q ss_pred             HHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHH
Q 013318          100 WLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (445)
Q Consensus       100 ~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~  178 (445)
                      .+..+.. ..+++..+++.|++.|++.+...+....+..+..          ++++++++.++.......+..+|+.++.
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~  153 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLY----------EGTQLRHANSLLNMGILVSPLLAPLIGG  153 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665544 5688899999999999999877766666666654          4578999999988888888889998887


Q ss_pred             HhhcCccccccccCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchh
Q 013318          179 AVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRM  257 (445)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (445)
                      .+...           .+||. .|.+..++..+..+ ..+++||+++.++++         .+.+   +...+.+|+|++
T Consensus       154 ~l~~~-----------~g~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~  209 (394)
T PRK11652        154 LLTTL-----------FGWRA-CYLFLLLLGAGVTFSMARWMPETRPADARR---------TRVL---ASYRTLLSNRRF  209 (394)
T ss_pred             HHHhc-----------cChHH-HHHHHHHHHHHHHHHHHHhCCccCccccch---------hHHH---HHHHHHHcChHH
Confidence            66432           35764 34444333333222 234455532211100         0111   233456677776


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH
Q 013318          258 LLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  336 (445)
Q Consensus       258 ~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~  336 (445)
                      +......+.............+..+.+ .+.+..+.++......++..+++.+.+++.||.+++. .  .+.....++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~--~~~~~~~~~~~  286 (394)
T PRK11652        210 NCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-W--QSVICCLLAGL  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHH
Confidence            543322221111111111222222221 2344556787777888888999999999999987332 2  22222221111


Q ss_pred             H-HHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcch
Q 013318          337 W-ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       337 ~-~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~~  409 (445)
                      . ....+....+   ........+++|++.+...+...+...+..|++++.+.++.+..+.+|..++..+.+..
T Consensus       287 ~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        287 LMWIPGWFGVMN---VWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             HHHHHHHhcccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1 1111111111   13345566778888888888888888888887777788888888888888877666544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.92  E-value=6.2e-23  Score=204.86  Aligned_cols=358  Identities=13%  Similarity=0.053  Sum_probs=216.8

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      +.++.+....+++++....+.....+.|.+.++.+.+...    .+.......+++++.|++.||+|||+++.++.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3445555666666666666666667777776666665543    344555667889999999999999999999988777


Q ss_pred             HHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHH
Q 013318          101 LFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (445)
Q Consensus       101 ~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~  179 (445)
                      +..+.. ..+++..++..|++.|++.+..++...+++.++.          ++++|++++|+......+|.++|++++..
T Consensus        89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW----------PKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665544 6789999999999999999999999999999987          46799999999999999999999988876


Q ss_pred             hhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccch-h-------hhhHHHHHHHHHHHh
Q 013318          180 VLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASV-N-------FYSYLVSLSKSITTL  251 (445)
Q Consensus       180 l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~  251 (445)
                      +....+         .+||. .+.+..+..++..+....+||+++.++++.++++. .       .....+...++..+.
T Consensus       159 l~~~~~---------~~w~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (405)
T TIGR00891       159 VVPVWG---------DGWRA-LFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAA  228 (405)
T ss_pred             HHHhcC---------ccHHH-HHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHH
Confidence            654321         24764 34333322222222234455543211110000000 0       000000000110000


Q ss_pred             hc--cch----hHHHHHHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchH
Q 013318          252 LA--DVR----MLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV  324 (445)
Q Consensus       252 l~--~~~----~~~l~~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i  324 (445)
                      .+  .++    +..+.......+.........++.++. +.+++..+.+.+....+++.++++++.|++.||++||+.+ 
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~-  307 (405)
T TIGR00891       229 MVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY-  307 (405)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh-
Confidence            00  011    111111111112111111223443332 2345566788888899999999999999999999988744 


Q ss_pred             hHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHH
Q 013318          325 SGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~  403 (445)
                      ..+.++..+.... .....++     .....+..++.++..+...+..++++.+.+|++. ++++|+.+....+|..+++
T Consensus       308 ~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~  381 (405)
T TIGR00891       308 VCSLLAGQLLIIP-VFAIGAN-----VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAP  381 (405)
T ss_pred             HHHHHHHHHHHHH-HHHhCCc-----hHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHH
Confidence            4444433222111 1122211     1233334455566555566677788999998764 5578988888888888777


Q ss_pred             Hhhcch
Q 013318          404 FIGPYI  409 (445)
Q Consensus       404 ~i~~~~  409 (445)
                      .+.+.+
T Consensus       382 ~~~g~l  387 (405)
T TIGR00891       382 IIGALL  387 (405)
T ss_pred             HHHHHH
Confidence            666543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=8.5e-23  Score=200.68  Aligned_cols=309  Identities=14%  Similarity=0.081  Sum_probs=203.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhc-----chhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP-----SWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        67 ~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~-----~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      .......+++++.|++.||+|||+++..+..+..+.... ...+     ++..+++.|+++|++.+..+++..+++.++.
T Consensus        42 ~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  121 (365)
T TIGR00900        42 AGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLV  121 (365)
T ss_pred             HHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            334455678889999999999999999998776554433 2334     8888999999999999999999999999997


Q ss_pred             hhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                                ++++|++++|+.....++|..+|++++..+...           .+||. .+.+..+..++..++.++++
T Consensus       122 ----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----------~g~~~-~~~~~~~~~~~~~~~~~~~~  179 (365)
T TIGR00900       122 ----------PEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-----------LGIKW-AIWVDAVGFAISALLIVSVR  179 (365)
T ss_pred             ----------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHH-HHHHHHHHHHHHHHHHHhcc
Confidence                      467999999999999999999999998876533           24654 34443433333333334444


Q ss_pred             CCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH-HHHHhhhcccccc-cccccchhHHHHHH
Q 013318          221 KEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQ-AFVWAEFTKEIVT-PALGVSGVGGAMAV  298 (445)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~-~f~~~~~~~~~~~-~~~~~~~~g~~~~~  298 (445)
                      +|+++++++ ++.+.+   ..++..+...+.+|+|+++......+..+... ......+|.+..+ .+.+..+.+.+...
T Consensus       180 ~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (365)
T TIGR00900       180 IPELAASEI-QALSNA---VLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAA  255 (365)
T ss_pred             cccCCCccc-cccchh---HHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHH
Confidence            333221111 110000   11111222344667888766554433333222 1111223322221 24555678888889


Q ss_pred             HHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 013318          299 YGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGI  378 (445)
Q Consensus       299 ~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~  378 (445)
                      .+++.++++++.+++.||.++|+ ++..+..+..+++.  ...+.++ +   ....++..+++|++.+...+...+++.+
T Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~  328 (365)
T TIGR00900       256 FGLGALLGALLLGLLGRYFKRMA-LMTGAIFVIGLAIL--VVGLTPP-N---FPLFLVLWFAIGVGYGPINVPQGTLLQR  328 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHHH--HHHhhch-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998876 33444444443332  1223322 1   2455667788899999888889999999


Q ss_pred             hccCC-chhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          379 LFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       379 ~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      ..|++ ++.+.|+++..+.+|..++..+.+.
T Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~  359 (365)
T TIGR00900       329 RVPAELLGRVFGAQFSLSHAAWPLGLILAGP  359 (365)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876 4557899999999888887766543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.92  E-value=1e-22  Score=204.98  Aligned_cols=325  Identities=11%  Similarity=-0.012  Sum_probs=204.0

Q ss_pred             HHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh------hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN------LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        67 ~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~------~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      .......+++++.|++.||+|||+++..+..+.++.....      ..+++..+++.|+++|++.+...++..+++.++.
T Consensus        60 ~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~  139 (417)
T PRK10489         60 LTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALV  139 (417)
T ss_pred             HHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            3344556788899999999999999998877655433221      1467788888999999999988888777887776


Q ss_pred             hhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                                ++++|+++.++.....++|..+|+.++..+....           +|+. .|.+..+..++..++.+.+|
T Consensus       140 ----------~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~l~  197 (417)
T PRK10489        140 ----------GRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-----------GVAW-NYGLAAAGTFITLLPLLRLP  197 (417)
T ss_pred             ----------CHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-----------hhHH-HHHHHHHHHHHHHHHHHhCC
Confidence                      4678999999999999999999999887765322           3432 34444444444444445566


Q ss_pred             CCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHH
Q 013318          221 KEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVY  299 (445)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~  299 (445)
                      +++++++++  ++   ..++.+   +.....+|+|.++......+......+ ....+|.+..+ .+.+....|++.+..
T Consensus       198 ~~~~~~~~~--~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~~  268 (417)
T PRK10489        198 ALPPPPQPR--EH---PLRSLL---AGFRFLLASPVVGGIALLGGLLTMASA-VRVLYPALADEVWQMGAAQIGLLYAAV  268 (417)
T ss_pred             CCCCCCccc--cc---chHHHH---HHHHHHHcChHHHHHHHHHHHHHHHHh-HHHhhHHHHHhccCCChhHhHHHHHHH
Confidence            532211111  00   011111   122335667766544332222221111 12334433332 355566788888899


Q ss_pred             HHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhh
Q 013318          300 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL  379 (445)
Q Consensus       300 ~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~  379 (445)
                      +++.++++++.+++.||.++++ .+..+.++..++++  +....++     .....+..+++|++.+...+...+++.+.
T Consensus       269 ~~g~~ig~~~~~~l~~~~~~~~-~l~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  340 (417)
T PRK10489        269 PLGAALGALTSGWLAHSARPGL-LMLLSTLGSFLAVG--LFGLMPM-----WILAVLCLALFGYLSAISSLLQYTLLQTQ  340 (417)
T ss_pred             HHHHHHHHHHHHHhhhccCcch-HHHHHHHHHHHHHH--HHHccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999866554 34455555444432  2233322     23455667778888887777778899999


Q ss_pred             ccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHH-HHHHHH
Q 013318          380 FKHD-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICV-ALVGIL  430 (445)
Q Consensus       380 ~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~-~~~~~~  430 (445)
                      .|++ +++++|+++..+.+|..+|..+.+.    .+....+.+.+++.++ +++...
T Consensus       341 ~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        341 TPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             CCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            9876 5668888888888887777666544    3444455544444333 344333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.92  E-value=4.4e-22  Score=199.09  Aligned_cols=326  Identities=13%  Similarity=0.077  Sum_probs=190.3

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhhhcc-CCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      .+||.+...+++.+.|......+.+.+.+.+ +.+++....    ++....++++.++.|++.||+|.|+++.++.++++
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            4578888888888888888777777777654 577776543    34455778888999999999999999999998877


Q ss_pred             HHHHHh-hh-----cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhh
Q 013318          101 LFVAAN-LF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (445)
Q Consensus       101 ~~~~~~-~~-----~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~  174 (445)
                      +.+... +.     +++..+++.|++.|++ +..+++....+++|+          |++|||+++|++....++|..+++
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf----------p~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF----------PKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC----------CHhHhHHHHHHHHHHHhhHHHHHH
Confidence            766543 33     7899999999999998 778888888999987          467899999999766677776665


Q ss_pred             HHHHHhh-----cCcccccc-ccC-CCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHH
Q 013318          175 LITLAVL-----KDDKVCAA-LLG-GSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKS  247 (445)
Q Consensus       175 li~~~l~-----~~~~~~~~-~~~-~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (445)
                      ++...+.     ........ ... +..+|+. ..++..++.++..++.++..+++++. ++              ..++
T Consensus       181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~-~~~~~~~~~iv~~i~~~~~~~~~~~~-~~--------------~~~~  244 (462)
T PRK15034        181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLAN-AAWIWVPLLAIATIAAWSGMNDIASS-RA--------------SIAD  244 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchHHHHH-HHHHHHHHHHHHHHHHHHhCCCcccc-cc--------------CHHH
Confidence            5443322     11100000 000 0123443 33344444444444444443222111 00              1123


Q ss_pred             HHHhhccchhHHHHHHHHH-HHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhH
Q 013318          248 ITTLLADVRMLLIIPLFAY-SGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSG  326 (445)
Q Consensus       248 ~~~~l~~~~~~~l~~~~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~  326 (445)
                      ..+.+|+|+.|++..+.+. .|...++ ..++|.++. ..++............+...+.++++|+++||+|+++. ...
T Consensus       245 ~~~vlk~~~~Wllslly~~tFG~fvg~-s~~lp~~~~-~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v-l~~  321 (462)
T PRK15034        245 QLPVLQRLHLWLLSLLYLATFGSFIGF-SAGFAMLAK-TQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV-TLI  321 (462)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHH-HHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH-HHH
Confidence            4567899998876654332 1221122 123333321 22222222222334456778888999999999998874 445


Q ss_pred             HHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccC
Q 013318          327 GAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH  382 (445)
Q Consensus       327 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~  382 (445)
                      +.+...++....+...+++... .............++.+..+...+.++.+++|+
T Consensus       322 ~~i~~~i~~~~~~l~lp~~~~~-~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~  376 (462)
T PRK15034        322 NFIFMAIFSALLFLTLPGTGSG-NFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQ  376 (462)
T ss_pred             HHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence            5544333322112223322110 011222222223344444555556677777774

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=4.4e-23  Score=210.61  Aligned_cols=350  Identities=11%  Similarity=-0.085  Sum_probs=210.8

Q ss_pred             CCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h--hcchhhHHhHHHHhhhhhHHhhh
Q 013318           58 GNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWV  130 (445)
Q Consensus        58 ~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~--~~~~~~li~~r~l~Gig~g~~~~  130 (445)
                      .+++...    .+..+..+.+++++.|++.||+|+|+++.++.+++++..+.. .  .+++..+++.|+++|++++..++
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~  150 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSP  150 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchh
Confidence            3455444    344455677888999999999999999999998877665543 2  35677788899999999999999


Q ss_pred             hhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHH
Q 013318          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVIT  210 (445)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~  210 (445)
                      +...+++++.          |+++|++++|+.....++|.++|+++...+....          .+||. .|.+.+++.+
T Consensus       151 ~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~----------~gw~~-~f~i~~~~~~  209 (465)
T TIGR00894       151 ATHKIIVKWA----------PPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW----------GGWPM-IFYVFGIVGC  209 (465)
T ss_pred             hHHHHHHhcC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCCe-ehhhhhHHHH
Confidence            9999999997          4689999999999999999999998887765331          15764 4445555444


Q ss_pred             HHHHHHH-hccC-CcccCcccccccch-----hhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 013318          211 LGTILMC-FLRK-EEDKGEKETADASV-----NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  283 (445)
Q Consensus       211 ~~~~l~~-~l~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~  283 (445)
                      +..++.+ +.++ |+++++.+..+++.     .++....+......+.+++++++......+...........++|.++.
T Consensus       210 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~  289 (465)
T TIGR00894       210 AWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFIS  289 (465)
T ss_pred             HHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333333 3443 22211111000000     000000000012345677888776655444333322233345555543


Q ss_pred             c-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccch-------HhHHHHHHHHHHHHHHhhccCCCCccchhHHH
Q 013318          284 T-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFI-------VSGGAIAQVVVFLWILINYSVTSGVLGTLYPL  355 (445)
Q Consensus       284 ~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~-------i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (445)
                      + .+++..+.|+..+.+.++..+++++.|+++||+++|+..       +..+..+...+..........+.    .....
T Consensus       290 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  365 (465)
T TIGR00894       290 WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA----FYLTI  365 (465)
T ss_pred             HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHH
Confidence            2 355666788888899999999999999999987544211       11111111111111011121111    12222


Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHHHHHHH
Q 013318          356 IMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY-------ISLQAMLIVMVVGICVALVG  428 (445)
Q Consensus       356 ~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~-------~~~~~~~~i~~~~~~~~~~~  428 (445)
                      +...+.+.+.+...+.......+..|+..+.+.++.++...+|..+++.+.+.       ..+...+.+.++..+++.+.
T Consensus       366 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~  445 (465)
T TIGR00894       366 IILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF  445 (465)
T ss_pred             HHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            33333344444334444445557777766667889999888888777655543       23566778888888888777


Q ss_pred             HHHH
Q 013318          429 ILFL  432 (445)
Q Consensus       429 ~~~~  432 (445)
                      +...
T Consensus       446 ~~~~  449 (465)
T TIGR00894       446 YLIF  449 (465)
T ss_pred             eeee
Confidence            6554

>PRK11043 putative transporter; Provisional

Probab=99.92  E-value=1e-21  Score=196.67  Aligned_cols=337  Identities=11%  Similarity=0.009  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh
Q 013318           31 HILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN  106 (445)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~  106 (445)
                      .+..+...+.+.+.+...+..|.+.++.+.+...    .+.......+++++.|++.||+|||+++..+..+..+.....
T Consensus         9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   88 (401)
T PRK11043          9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM   88 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            3333334444444344444445555555665544    344455667889999999999999999999988776655543


Q ss_pred             -hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcc
Q 013318          107 -LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK  185 (445)
Q Consensus       107 -~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~  185 (445)
                       ..+++..+++.|+++|+|.+...+...+++.++.          +++++++..+..+....++..+|+.++..+..+  
T Consensus        89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~--  156 (401)
T PRK11043         89 LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRY----------PAQKANRVFATIMPLVALSPALAPLLGAWLLNH--  156 (401)
T ss_pred             HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence             5688889999999999998887777667777775          466788888988888888999999888776533  


Q ss_pred             ccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHH
Q 013318          186 VCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA  265 (445)
Q Consensus       186 ~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  265 (445)
                               .+||. .|.+..++.++..++.+++++++++++++      ++    +   .+.++.+|+|+++.....+.
T Consensus       157 ---------~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~---~~~~~~~~~~~~~~~~~~~~  213 (401)
T PRK11043        157 ---------FGWQA-IFATLFAITLLLILPTLRLKPSKKARKQS------QD----A---LTFKQLLKSKTYLGNVLIFA  213 (401)
T ss_pred             ---------CChHH-HHHHHHHHHHHHHHHHHHcCCCCCccccc------hH----H---HHHHHHHcChhHHHHHHHHH
Confidence                     35764 34444444444444444455432211100      00    1   12345677877764433222


Q ss_pred             HHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH-HHHhhccC
Q 013318          266 YSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL-WILINYSV  344 (445)
Q Consensus       266 ~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~-~~~~~~~~  344 (445)
                      ........+..+.|.+..+.+++..+.|+.+....++..+|++..+++.||+++|+.. ..+.+...++.. +.......
T Consensus       214 ~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  292 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL-PWLLVLFAVSVIAIWLASLLS  292 (401)
T ss_pred             HHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            2211111112333433333455556778877888889999999999999999877633 333333222211 11111111


Q ss_pred             CCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhh
Q 013318          345 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       345 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      .+.   ....++...++|++.+...+...+...+..|++++++.|+++..+..+...+..+.
T Consensus       293 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~  351 (401)
T PRK11043        293 HPS---LVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLV  351 (401)
T ss_pred             cCc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence            111   13344455677888888888777777777888788889999888776655544443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=3.1e-23  Score=202.93  Aligned_cols=339  Identities=16%  Similarity=0.163  Sum_probs=211.1

Q ss_pred             HHHHHHHHHHhhhHhhhh-hhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhh
Q 013318           35 CAFLLIFLAYGAAQNLET-TVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLF  108 (445)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~-~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~  108 (445)
                      ++.++...+........| .+.++.+.+...    .+.......+++++.|++.||+|||+++.++.++.++.... .+.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   82 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence            344444444444445555 555555554433    33444466788899999999999999999999888776333 334


Q ss_pred             cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccc
Q 013318          109 PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCA  188 (445)
Q Consensus       109 ~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~  188 (445)
                      ++.+.+++.|++.|++.+..+++..+++.++.          ++++|++++|+.....++|..+|+.++..+...     
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----  147 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWF----------PPEERGRAFGILSAGFSLGSILGPLLGGFLISY-----  147 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----
T ss_pred             hhHHHHhhhccccccccccccccccccccccc----------hhhhhhhccccccchhhhhhhcccchhhhhhhc-----
Confidence            77778899999999999999999999999997          467999999999999999999999998877532     


Q ss_pred             cccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHH-HHHhhccchhHHHHHHHHH
Q 013318          189 ALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKS-ITTLLADVRMLLIIPLFAY  266 (445)
Q Consensus       189 ~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~  266 (445)
                            .+||. .|.+.+++.++..++. +++++++++++++.++++.+   +.++..++ ..+..++|.++......+.
T Consensus       148 ------~~~~~-~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (352)
T PF07690_consen  148 ------FGWRW-AFLISAILSLIAAILFILFLPEPPPPRERESPKESES---KKPKPLKPGFKSLFKNPVLWILLIAFFL  217 (352)
T ss_dssp             ------CHHCC-HHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT-----HHHCCCH-CTHHHHHHCCHHHHHHHHH
T ss_pred             ------ccccc-ccccccchhhhhhhhHhhhhhhccccccccccccccc---ccccccccccccccccchhhhhhhhhhH
Confidence                  24654 4555555555554432 34444333222111111100   00111111 2233445555423222222


Q ss_pred             HHHHHHHHHhhhcccc-cccccc-cchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccC
Q 013318          267 SGLQQAFVWAEFTKEI-VTPALG-VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV  344 (445)
Q Consensus       267 ~g~~~~f~~~~~~~~~-~~~~~~-~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~  344 (445)
                      .++.......+.+.+. ...+.+ ..+.+.+....++...+++++.|++.||+++|+... .......+.... +.....
T Consensus       218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~  295 (352)
T PF07690_consen  218 FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLL-IAILLLILGALG-LLLLPF  295 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH-HCCSHH
T ss_pred             HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH-HHHHHHHHHHHH-HHHHHH
Confidence            2222222222333321 123344 456788888999999999999999999998765443 333332222211 111111


Q ss_pred             CCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHH
Q 013318          345 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       345 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~  403 (445)
                      ..+   ....+...+++|++.+...+...+++.+..|++ ++++.|+++..+++|..+|+
T Consensus       296 ~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 SSS---PVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HCH---HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            111   234555777889999999999999999999866 45689999999999988875

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.92  E-value=1.1e-21  Score=197.29  Aligned_cols=342  Identities=13%  Similarity=0.060  Sum_probs=206.3

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        62 ~~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      ....++++..+++++++.|+++||+|||+++..+..++.+....+ ..+++..+++.|+++|++.+...+....++.++.
T Consensus        54 ~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~  133 (413)
T PRK15403         54 PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAF  133 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345677788888999999999999999999999988887766654 6789999999999999999876666666676765


Q ss_pred             hhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-Hhc
Q 013318          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFL  219 (445)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l  219 (445)
                                ++++|+++++++.....+|..+|++++..+..+           .+||. .|.+.+++.++..++. +++
T Consensus       134 ----------~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-----------~gw~~-~f~~~~~~~~i~~~~~~~~l  191 (413)
T PRK15403        134 ----------GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-----------VHWKV-LFAIIAVMGLIAFVGLLLAM  191 (413)
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCHHH-HHHHHHHHHHHHHHHHHHhC
Confidence                      467899999999999999999999998776532           35763 5555565555554433 346


Q ss_pred             cCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHH
Q 013318          220 RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAV  298 (445)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~  298 (445)
                      ||++++++++     .    +.++..++..+.+|||+++.....++.......-+....|..+.+ .+.+..+.++....
T Consensus       192 p~~~~~~~~~-----~----~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~  262 (413)
T PRK15403        192 PETVKRGAVP-----F----SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVP  262 (413)
T ss_pred             CCCccccCCC-----C----ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHH
Confidence            6543211111     0    011223345677899998876554443333221122333433332 24555677888777


Q ss_pred             HHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhh--ccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHH
Q 013318          299 YGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN--YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALL  376 (445)
Q Consensus       299 ~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l  376 (445)
                      ...+..+++.+.+++.++..+++.. ..+..+..++.++....  ..++.    +...++..+++++|.+...+...+..
T Consensus       263 ~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~ig~~l~~~~~~~~~~~----~~~~~~~~~l~~~G~~~~~p~~~~~a  337 (413)
T PRK15403        263 VFGAVIVANAIVARFVKDPTEPRFI-WRAVPIQLVGLALLIVGNLLWPHV----WLWSVLGTSLYAFGIGLIFPTLFRFT  337 (413)
T ss_pred             HHHHHHHHHHHHHHHhccCCchhHH-HHHHHHHHHHHHHHHHHHHHcccc----HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            8888888888888866444333322 22222212221111111  11221    12245566677888777777665432


Q ss_pred             HhhccCCchhhHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013318          377 GILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI---SLQAMLIVMVVGICVALVGILFLTIQVEKA  439 (445)
Q Consensus       377 ~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  439 (445)
                      -.-.+++++++.|++++.+..+...+....++.   +....+....+++.+....++.-++|..|+
T Consensus       338 l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (413)
T PRK15403        338 LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLAGLLNRVRQ  403 (413)
T ss_pred             hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            122222356677888888877666655444332   334444444444444444444444444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.92  E-value=3e-22  Score=198.56  Aligned_cols=349  Identities=13%  Similarity=0.051  Sum_probs=208.7

Q ss_pred             hhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhh
Q 013318           49 NLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGF  123 (445)
Q Consensus        49 ~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gi  123 (445)
                      +..|.+.++.+++....    +......++++++.|++.||+|||+++..+..+..+..... ..+++..++..|+++|+
T Consensus        12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~   91 (377)
T PRK11102         12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGL   91 (377)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            44455555566665443    33444566788999999999999999999988777665554 56888888999999999


Q ss_pred             hhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHH
Q 013318          124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFI  203 (445)
Q Consensus       124 g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~  203 (445)
                      +.+..++...+++.++.          ++++|++++|+.+....+|..+|+.++..+...           .+|+. .|.
T Consensus        92 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------~~~~~-~~~  149 (377)
T PRK11102         92 AAAAASVVINALMRDMF----------PKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-----------FSWHA-IFW  149 (377)
T ss_pred             HHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cChHH-HHH
Confidence            99999988888998887          467899999999999999999999888766532           35653 444


Q ss_pred             HHHHHHHHHHHH-HHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 013318          204 VFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI  282 (445)
Q Consensus       204 i~~~l~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~  282 (445)
                      +..++..+..++ .+++||++++++++  +      .+.++..++..+.+|+|+.+....................+..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (377)
T PRK11102        150 VLALAAILAAALVFFFIPETLPKERRQ--P------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVY  221 (377)
T ss_pred             HHHHHHHHHHHHHHHhCCccCcccccC--C------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            444444444333 34566543221111  0      01112223444567888776543332221111111112223222


Q ss_pred             cc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHH-HHHHHHhhccCCCCccchhHHHHHHHH
Q 013318          283 VT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVV-VFLWILINYSVTSGVLGTLYPLIMAAL  360 (445)
Q Consensus       283 ~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l  360 (445)
                      .+ .+.+.++.|.+.....++.++++++.|++.||+++|+. +..+.++..+ +..+......+. .   .....+...+
T Consensus       222 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~  296 (377)
T PRK11102        222 IELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNM-LRFGLWIQFIMGIWLVVSALLDL-G---FWALVVGVAA  296 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHhh-h---HHHHHHHHHH
Confidence            22 35566678888899999999999999999999998874 3455443222 211111111111 1   1222233334


Q ss_pred             HhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHH-HHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHH
Q 013318          361 LGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQ-CASIAVVFFIGPYI--SLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       361 ~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~-~~g~~ig~~i~~~~--~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      ++.+.+...+.......+..|++++++.+.++... .+|..++..+....  .....+.+.+++.+.+.+.+++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (377)
T PRK11102        297 FVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAPFTSAWPMVWSMAFCSILSILFYLYA  371 (377)
T ss_pred             HHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHh
Confidence            44444444445556677777877777777665543 35566666554321  22223333344444444444443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.92  E-value=3.4e-22  Score=203.31  Aligned_cols=368  Identities=11%  Similarity=0.025  Sum_probs=222.1

Q ss_pred             hHHHHHHHHHHHHHHh---hhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           30 VHILSCAFLLIFLAYG---AAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        30 ~~~l~~~~~~~~~~~~---~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      ++++..+++.....+.   ......+.+.++.+.+...    .+..+....++.++.|+++||+|||++++.+..+..+.
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~   97 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLG   97 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHH
Confidence            4444455555544432   2334456666555555433    33344455678889999999999999999998777665


Q ss_pred             HHHh-hhcchhhHHh-HHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          103 VAAN-LFPSWYTMVP-ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       103 ~~~~-~~~~~~~li~-~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      .+.. +.+++..++. .|+++|++.+..++...+++.++.           +++|+++.|+..+...+|..+|+.+...+
T Consensus        98 ~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~-----------~~~r~~a~g~~~~~~~~g~~~~~~l~~~l  166 (455)
T TIGR00892        98 MILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYF-----------YRRRPLANGLAMAGSPVFLSTLAPLNQYL  166 (455)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-----------HhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            5543 5677777654 579999999987666667777775           46899999999999999999998887666


Q ss_pred             hcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccC-Cccc---Ccc--ccccc--chhh--hhHHHHHHHHH--
Q 013318          181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRK-EEDK---GEK--ETADA--SVNF--YSYLVSLSKSI--  248 (445)
Q Consensus       181 ~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~-~~~~---~~~--~~~~~--~~~~--~~~~~~~~~~~--  248 (445)
                      ...           .+||. .|.+.+++.++..+..+++++ ++..   +++  +..+.  ...+  .....+..++.  
T Consensus       167 ~~~-----------~gwr~-~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (455)
T TIGR00892       167 FES-----------FGWRG-SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLD  234 (455)
T ss_pred             HHH-----------hChHH-HHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcc
Confidence            432           35764 455555555444443334332 2110   100  00000  0000  00001111111  


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCC--CCccch-Hh
Q 013318          249 TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFI-VS  325 (445)
Q Consensus       249 ~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~--g~~~~~-i~  325 (445)
                      .+.+|+|+++......+..++.......+++.+..+.+++..+.+.+.+..+++.++++++.|++.||.  ++|+.. +.
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  314 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS  314 (455)
T ss_pred             hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence            256788887765543333332211112233433333456666788888999999999999999999974  223222 11


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHH
Q 013318          326 GGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFF  404 (445)
Q Consensus       326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~  404 (445)
                      .+.++..++++  +....++     ...+++..+++|++.+...+..++++.+.+|++ +++++|+++..+++|..+|+.
T Consensus       315 ~~~~~~~l~~l--l~~~~~~-----~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~  387 (455)
T TIGR00892       315 FALLFNGLTHL--LCALAGD-----YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPP  387 (455)
T ss_pred             HHHHHHHHHHH--HHHHhch-----HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccc
Confidence            22222222221  1222222     234556777889988888888889999999876 456889999999999888876


Q ss_pred             hhcch-----hHHHHHHHHHHHHHHHHH
Q 013318          405 IGPYI-----SLQAMLIVMVVGICVALV  427 (445)
Q Consensus       405 i~~~~-----~~~~~~~i~~~~~~~~~~  427 (445)
                      +.+.+     ++...+++.+++.+++.+
T Consensus       388 i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       388 LAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             ceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            66432     355666666665555544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.92  E-value=1.8e-22  Score=206.78  Aligned_cols=348  Identities=12%  Similarity=0.037  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhh-------------hcchhhHHhHHHHhhhhhHHhhhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL-------------FPSWYTMVPASLYLGFAASIIWVG  131 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~-------------~~~~~~li~~r~l~Gig~g~~~~~  131 (445)
                      .+......++++++.|++.||+|||++++++..++.+..+...             .+.+..+++.|+++|++.|..++.
T Consensus        61 ~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~  140 (479)
T PRK10077         61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML  140 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhH
Confidence            4555566778999999999999999999999888766544321             122567788999999999999999


Q ss_pred             hhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHH
Q 013318          132 EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITL  211 (445)
Q Consensus       132 ~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~  211 (445)
                      ..++++|+.          |+++||+++|+......+|..++++++..+.....  +. .....+||. .|++.++..++
T Consensus       141 ~~~~i~e~~----------~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~~-~~~~~gWr~-~f~~~~~~~~~  206 (479)
T PRK10077        141 SPMYIAEIA----------PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD--AS-WLNTDGWRY-MFASEAIPALL  206 (479)
T ss_pred             HHHHHHhhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCc--cc-ccccCChHH-HHHHHHHHHHH
Confidence            999999998          46789999999998888898888777655432110  00 011357864 44444444444


Q ss_pred             HHHHHHhccCCccc----Ccccccccch---hhhhHHHHHHHHHHHhhc-----cchhHHHHHHHHHHH-----HHHH--
Q 013318          212 GTILMCFLRKEEDK----GEKETADASV---NFYSYLVSLSKSITTLLA-----DVRMLLIIPLFAYSG-----LQQA--  272 (445)
Q Consensus       212 ~~~l~~~l~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~l~-----~~~~~~l~~~~~~~g-----~~~~--  272 (445)
                      ..+..+++||+++.    .++++.++..   ......++..++..+.++     .++.+......+..+     +...  
T Consensus       207 ~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (479)
T PRK10077        207 FLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVG  286 (479)
T ss_pred             HHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhC
Confidence            44444667765421    1111000000   000000111111111111     111111111111111     1110  


Q ss_pred             H-HHhhhcccc-cccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccc
Q 013318          273 F-VWAEFTKEI-VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG  350 (445)
Q Consensus       273 f-~~~~~~~~~-~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~  350 (445)
                      + ....+.+.+ .+.+.+....+......++..++++++.|++.||++||+. +..+.++..++.+.......++..   
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~-~i~~~~~~~v~~~~l~~~~~~~~~---  362 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGTAFYTQAP---  362 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHhHHHHHHHHHHHHHHHhcCcc---
Confidence            0 011121222 2233333445556667888999999999999999998874 456666555543321111111111   


Q ss_pred             hhHHHHHHHHHhhhhhh-hhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----------hhHHHHHHHH
Q 013318          351 TLYPLIMAALLGIGDGV-LNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----------ISLQAMLIVM  418 (445)
Q Consensus       351 ~~~~~~~~~l~G~~~~~-~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----------~~~~~~~~i~  418 (445)
                      .........+++++.+. +.+..++++.|.+|++ |+.+.|+.+..+.+|..++..+.|.          .+..+.+++.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  442 (479)
T PRK10077        363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY  442 (479)
T ss_pred             cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHH
Confidence            12222333444444432 4467789999999876 5567888888888887766433332          2233455555


Q ss_pred             HHHHHHHHHHHH
Q 013318          419 VVGICVALVGIL  430 (445)
Q Consensus       419 ~~~~~~~~~~~~  430 (445)
                      .+.++++++...
T Consensus       443 ~~~~~~~~~~~~  454 (479)
T PRK10077        443 GCMGVLAALFMW  454 (479)
T ss_pred             HHHHHHHHHHHH
Confidence            555555554443

>PRK10504 putative transporter; Provisional

Probab=99.92  E-value=1.6e-21  Score=199.37  Aligned_cols=355  Identities=8%  Similarity=-0.039  Sum_probs=223.9

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      +..++++.+.++.++...+........|.+.++.+.+...    .+......++++++.|++.||+|||++++.+..+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~   86 (471)
T PRK10504          7 SVRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFT   86 (471)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            3455677777777777666665666677776666666543    233344556788999999999999999999887776


Q ss_pred             HHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHH
Q 013318          101 LFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (445)
Q Consensus       101 ~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~  179 (445)
                      +..+.+ ..+++..+++.|+++|+|.+..++...+++.++.          |+++|+++.|+.....++|..+|++++..
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         87 LGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIV----------PREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            655543 5688888899999999999999988888888887          46789999999999899999999998877


Q ss_pred             hhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHH-hccCCcccC-ccccccc--------------chhhh---hH
Q 013318          180 VLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMC-FLRKEEDKG-EKETADA--------------SVNFY---SY  240 (445)
Q Consensus       180 l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~-~l~~~~~~~-~~~~~~~--------------~~~~~---~~  240 (445)
                      +..+           .+||. .|.+...+..++.++.. ..|+++.++ +.|....              +..+.   ..
T Consensus       157 l~~~-----------~gw~~-~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (471)
T PRK10504        157 LVEY-----------ASWHW-IFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSP  224 (471)
T ss_pred             HHhh-----------ccHHH-HHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcch
Confidence            7543           25754 44444444444444333 334322111 1110000              00000   00


Q ss_pred             ------------------HHH----HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHH
Q 013318          241 ------------------LVS----LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMA  297 (445)
Q Consensus       241 ------------------~~~----~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~  297 (445)
                                        .++    ......+++|||++.......+..+..........+.++. ..+.+....++.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  304 (471)
T PRK10504        225 LAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI  304 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence                              000    0000135678888876554444433322111111221111 13445557788888


Q ss_pred             HHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013318          298 VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLG  377 (445)
Q Consensus       298 ~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~  377 (445)
                      ...++.+++.++.|++.||+++|+. +..+.++..+...+  +.+.+....  .....+..++.|++.+...+..+++..
T Consensus       305 ~~~~~~~~~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~  379 (471)
T PRK10504        305 PMVLGSMGMKRIVVQVVNRFGYRRV-LVATTLGLALVSLL--FMLVALLGW--YYLLPFVLFLQGMVNSTRFSSMNTLTL  379 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHH--HHhcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999998874 45565544443321  122221111  122334556677877777777888888


Q ss_pred             hhccCC-chhhHHHHHHHHHHHHHHHHHhh
Q 013318          378 ILFKHD-TEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       378 ~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      +..|++ ++.++|.+++.+.+|..+|..+.
T Consensus       380 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        380 KDLPDNLASSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             HcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            888876 44578998998888877765554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.92  E-value=9.9e-22  Score=196.68  Aligned_cols=334  Identities=11%  Similarity=0.049  Sum_probs=207.3

Q ss_pred             hHHHHHHHHHHHHHHhhhHh-hhhhhccCCCCchHHHHHHHHHH----HHhhhhHHHHHHHhCcchhhhhhhHHHHHHHH
Q 013318           30 VHILSCAFLLIFLAYGAAQN-LETTVNTEGNLGTISLGILYTSF----TCFSLVASLVVRVLGSKNALILGTTGYWLFVA  104 (445)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~-~~~~i~~~~~~g~~~~~~~~~~~----ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~  104 (445)
                      .+.+ ...++...+.....+ +.+.+.++.+++....+......    .+.+++.|+++||+|||+++.++.+...+..+
T Consensus        13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLL-IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3444 333333333333333 33344556677776666655543    34568899999999999999999988877666


Q ss_pred             Hh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcC
Q 013318          105 AN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (445)
Q Consensus       105 ~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~  183 (445)
                      .. ..++++.+++.|+++|++.+..+++..+++.++.          |+++|++++|+.....++|..+|++++..+. .
T Consensus        92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~  160 (400)
T PRK11646         92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLI----------RPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q  160 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            54 5678888889999999999998888888888886          4679999999999999999999999988775 2


Q ss_pred             ccccccccCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHH
Q 013318          184 DKVCAALLGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP  262 (445)
Q Consensus       184 ~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  262 (445)
                                 ++|+. .|.+.+++.++..++ .+++|++++++  +  +      .+.++   +..+.+|+|+++....
T Consensus       161 -----------~g~~~-~f~~~~~~~~~~~i~~~~~~~~~~~~~--~--~------~~~~~---~~~~~~~~~~~~~~~~  215 (400)
T PRK11646        161 -----------YDFRL-VCATGAVLFVLAAAFNAWLLPAYKLST--V--R------TPVRE---GMTRVLRDKRFVTYVL  215 (400)
T ss_pred             -----------hhHHH-HHHHHHHHHHHHHHHHHHhCCcccccc--c--c------hhhHH---HHHHHHcCchHHHHHH
Confidence                       24653 344444433333332 23444322111  0  0      01111   2335677888764433


Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccC-CCCccchHhHHHHHHHHHHHHHHhh
Q 013318          263 LFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILIN  341 (445)
Q Consensus       263 ~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~-~g~~~~~i~~g~~~~~~~~~~~~~~  341 (445)
                      .++............+|.+..+.+.+..+.+...+..++....+....+++.|| .+.++ .+..+.++..++..  ++.
T Consensus       216 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~--~l~  292 (400)
T PRK11646        216 TLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-RLMAGLLIMSLSMF--PIG  292 (400)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHH--HHH
Confidence            222111111111223443333333445567877777777776666666666654 54444 33455544444432  223


Q ss_pred             ccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          342 YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      ..++     .....+..++++++.+...|...+++.+..|++ +++++|.+++...+|..+|+.+.+.
T Consensus       293 ~~~~-----~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~  355 (400)
T PRK11646        293 MVSN-----LQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW  355 (400)
T ss_pred             Hhhh-----HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence            3332     123444556778888888888889999999865 5668899999998888887655543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.92  E-value=2.8e-22  Score=202.92  Aligned_cols=346  Identities=12%  Similarity=0.038  Sum_probs=192.3

Q ss_pred             hHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH-----H--HHH---HHHHHHhhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           30 VHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS-----L--GIL---YTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~-----~--~~~---~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      ...+.++.++.+.++.......|.+.+|.+.+...     .  ..+   +....+++++.|++.||+|||++++.+..++
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~   96 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM   96 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence            44444555556666666666777776554433211     1  111   1122467899999999999999999999988


Q ss_pred             HHHHHHh-hhcchh--------hHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhh
Q 013318          100 WLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ  170 (445)
Q Consensus       100 ~~~~~~~-~~~~~~--------~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~  170 (445)
                      ++..+.. +.+++.        .+++.|+++|++.+..+++...+++|+.          |+++||++++++....++|.
T Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~----------p~~~rg~~~~~~~~~~~~g~  166 (434)
T PRK15075         97 ASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA----------TPGRKGFYTSWQSASQQVAV  166 (434)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC----------CcccchHHHHHHHHHHHHHH
Confidence            7776654 566665        3578999999999999998889999998          57899999999988888888


Q ss_pred             hhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHH
Q 013318          171 FVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITT  250 (445)
Q Consensus       171 ~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (445)
                      .+|+.++..+......   .....++||. .|.+ .++  .. +..+++++..++.++..++ +  .+.+.++..+   +
T Consensus       167 ~~g~~~g~~l~~~~~~---~~~~~~gWr~-~f~~-~~~--~~-~~~~~~~~~~~e~~~~~~~-~--~~~~~~~~~~---~  232 (434)
T PRK15075        167 VFAALLGYLLNQWLSP---AQMAEWGWRI-PFLI-GCL--IV-PFIFLIRRSLEETEEFLAR-K--HRPSMREIFR---S  232 (434)
T ss_pred             HHHHHHHHHHHHhCCH---HHHhccchHH-HHHH-HHH--HH-HHHHHHHHhcCCCHHHHHh-h--hccccccHHH---H
Confidence            8888776655322110   0001357874 3332 111  11 1122233211111000000 0  0001111111   2


Q ss_pred             hhccchhHHHHHH-HHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHH
Q 013318          251 LLADVRMLLIIPL-FAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA  328 (445)
Q Consensus       251 ~l~~~~~~~l~~~-~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~  328 (445)
                      ..|+++.+..... .+...........+.|.++.+ .+++..+.++....++++.++++++.|+++||++||+.. ..+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~-~~~~  311 (434)
T PRK15075        233 LAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVL-IAFT  311 (434)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHH
Confidence            2344444332211 111111111222334433322 355555677778889999999999999999999988754 3433


Q ss_pred             HHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHH-HHHHHHHHHHHHH
Q 013318          329 IAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQ-LKVWQCASIAVVF  403 (445)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~-~~~~~~~g~~ig~  403 (445)
                      ++..+.....+....++++   .........+.+++.+...+..+.+..|.+|++.+ .+.++ ++..+.++..+++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p  385 (434)
T PRK15075        312 VLAILTAYPALSWLVAAPS---FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTP  385 (434)
T ss_pred             HHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHH
Confidence            3322211111111111221   12222333444566666666667888999998754 45665 3444444333333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.91  E-value=3.1e-23  Score=211.08  Aligned_cols=347  Identities=13%  Similarity=0.055  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h---hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~---~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      .+..+...++++++.|++.||+|||++++++.+++.+..... .   ..++..+++.|+++|+|.+..++....+++++.
T Consensus        77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  156 (481)
T TIGR00879        77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA  156 (481)
T ss_pred             HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccC
Confidence            455666778899999999999999999999998877655543 2   234457888999999999999999899999987


Q ss_pred             hhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHH---HHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 013318          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT---LAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMC  217 (445)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~---~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~  217 (445)
                                ++++|+++++++.....+|..+|++++   ....           ...+||. .|.+..+..++..+..+
T Consensus       157 ----------~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----------~~~~w~~-~f~~~~~~~~~~~~~~~  214 (481)
T TIGR00879       157 ----------PKALRGALTSLYQLAITFGILVAYGFGSGKVSLN-----------NTLGWRI-PLGLQLIPAGLLFLGLF  214 (481)
T ss_pred             ----------ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC-----------CCccHHH-HHHHHHHHHHHHHHHHh
Confidence                      578999999999999999999999887   2211           1246764 44443333333334445


Q ss_pred             hccCCccc----Cccccccc---c----hhhhhHHHH------------------HHHHHHHhhcc--chhHHHHHHHHH
Q 013318          218 FLRKEEDK----GEKETADA---S----VNFYSYLVS------------------LSKSITTLLAD--VRMLLIIPLFAY  266 (445)
Q Consensus       218 ~l~~~~~~----~~~~~~~~---~----~~~~~~~~~------------------~~~~~~~~l~~--~~~~~l~~~~~~  266 (445)
                      ++||+++.    ++++..++   +    ..+.....+                  ..++.++..++  ++........++
T Consensus       215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (481)
T TIGR00879       215 FLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWF  294 (481)
T ss_pred             cCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHH
Confidence            66664321    00000000   0    000000000                  00111111111  111111111111


Q ss_pred             HHHHHHHHHhhhcccc-cccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH-hhccC
Q 013318          267 SGLQQAFVWAEFTKEI-VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INYSV  344 (445)
Q Consensus       267 ~g~~~~f~~~~~~~~~-~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~-~~~~~  344 (445)
                      ...........+.+.+ .+.+++....+......+++.++++++.|++.||++||+.. ..+.++..+++++.. .....
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  373 (481)
T TIGR00879       295 QQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL-LIGAAGMAICLFVLGILGASF  373 (481)
T ss_pred             HHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHhhcc
Confidence            1110000011122222 22345555667778888999999999999999999988744 455555444432211 11111


Q ss_pred             CCCc--cchhHHHHHHHHHhhh-hhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHH
Q 013318          345 TSGV--LGTLYPLIMAALLGIG-DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLI  416 (445)
Q Consensus       345 ~~~~--~~~~~~~~~~~l~G~~-~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~  416 (445)
                      ....  ......+....+++.+ .....+...+++.|.+|++ ++.+.+..+....+|..++..+.+.    .++.+.++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~  453 (481)
T TIGR00879       374 VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI  453 (481)
T ss_pred             cCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeh
Confidence            1100  0001122222222222 2234466667789999876 4567888888888888777655543    24556667


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013318          417 VMVVGICVALVGILFLTI  434 (445)
Q Consensus       417 i~~~~~~~~~~~~~~~~~  434 (445)
                      +++++++++++...+..+
T Consensus       454 ~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       454 FFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             hHHHHHHHHHHHHheecc
Confidence            777777777666654443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=3.4e-22  Score=204.93  Aligned_cols=350  Identities=10%  Similarity=0.024  Sum_probs=220.3

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh
Q 013318           31 HILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN  106 (445)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~  106 (445)
                      +.+.++.++...+........|.+.++.+.+...    .+......+++.++.|++.||+|||+++.++..++.+.....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   84 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC   84 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444445566666555554332    344455667788899999999999999999998887766654


Q ss_pred             -hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcc
Q 013318          107 -LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK  185 (445)
Q Consensus       107 -~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~  185 (445)
                       ..+++..+++.|+++|++.+...+...+++.++.          |+++|+++++++.....+|..+|+.++..+..+  
T Consensus        85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--  152 (485)
T TIGR00711        85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY----------PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN--  152 (485)
T ss_pred             hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC--
Confidence             6789999999999999999999999999999997          467999999999999999999999988776533  


Q ss_pred             ccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccc--------------------cchh--hhhHHH
Q 013318          186 VCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETAD--------------------ASVN--FYSYLV  242 (445)
Q Consensus       186 ~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~--------------------~~~~--~~~~~~  242 (445)
                               .+||. .|.+...+.++..++. +++|+++++++++.+.                    .+..  ......
T Consensus       153 ---------~~w~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (485)
T TIGR00711       153 ---------YHWRW-IFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEIL  222 (485)
T ss_pred             ---------cCcee-hhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHH
Confidence                     35764 3444444444443333 3455432221111000                    0000  000000


Q ss_pred             ---------------HHHH-----HHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHH
Q 013318          243 ---------------SLSK-----SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGA  301 (445)
Q Consensus       243 ---------------~~~~-----~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i  301 (445)
                                     ++.+     ...+.+|+|+++......+..++........+|.++.+ .+.+..+.|..+...++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~  302 (485)
T TIGR00711       223 ILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGL  302 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                           0000     01245677777655443333333211111223333221 34566678888899999


Q ss_pred             HHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhcc
Q 013318          302 FDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK  381 (445)
Q Consensus       302 ~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~  381 (445)
                      +..+++++.|++.||+++|+ ++..+..+..++..+......++.+   ........++.|++.+...+.......+..|
T Consensus       303 ~~~~~~~~~g~l~~r~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~  378 (485)
T TIGR00711       303 APMLSSPIAGRMGDKIDPRK-LVTIGLILYAVGFYWRAFTFTPDTP---FLAIALPQFIRGFGMGCFFMPLTTIALSGLP  378 (485)
T ss_pred             HHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999887 4456665555544321111222222   2334455677888888777666666667777


Q ss_pred             CC-chhhHHHHHHHHHHHHHHHHHhh
Q 013318          382 HD-TEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       382 ~~-~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      ++ ++.+.|++++.+.+|..+|..+.
T Consensus       379 ~~~~g~~~~~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       379 PHKIARGSSLSNFTRQLGGSIGTALI  404 (485)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            55 45678999999998888876554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=2.9e-22  Score=199.24  Aligned_cols=333  Identities=15%  Similarity=0.084  Sum_probs=206.2

Q ss_pred             hhhHhhhhhhccCCCCchHHHHH----HHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhcchhhHHhHHH
Q 013318           45 GAAQNLETTVNTEGNLGTISLGI----LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASL  119 (445)
Q Consensus        45 ~~~~~~~~~i~~~~~~g~~~~~~----~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~~~~~li~~r~  119 (445)
                      .......|.+.++.+.+....+.    ......+++++.|++.||+|||+.+..+..+..+.... ...+++..+++.|+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (398)
T TIGR00895        34 AAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRF  113 (398)
T ss_pred             HHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            33445566776666666544333    33455678889999999999999999998877665554 35688888889999


Q ss_pred             HhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcch
Q 013318          120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTT  199 (445)
Q Consensus       120 l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~  199 (445)
                      +.|++.+..++...+++.++.          ++++|++++|+......+|..+|+.++..+...           .+|+.
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------~g~~~  172 (398)
T TIGR00895       114 LAGLGLGGLMPNLNALVSEYA----------PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-----------FGWRS  172 (398)
T ss_pred             HHhcccccchhhHHHHHHHHc----------CHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-----------cccee
Confidence            999999999999999999987          467899999999999999999999888766533           24654


Q ss_pred             hHHHHHHHHHHHH-HHHHHhccCCccc---Cccccc---------------ccchhhhhHHHHHHHHHHHhhccc----h
Q 013318          200 LLFIVFLGVITLG-TILMCFLRKEEDK---GEKETA---------------DASVNFYSYLVSLSKSITTLLADV----R  256 (445)
Q Consensus       200 ~~~~i~~~l~~~~-~~l~~~l~~~~~~---~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~~----~  256 (445)
                       .+.+.+++..+. .+...++|++++.   ++++..               +++..+.....+..++..+.++++    +
T Consensus       173 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (398)
T TIGR00895       173 -LFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARI  251 (398)
T ss_pred             -ehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHH
Confidence             333333333333 3333556654321   100000               000000000000111222222222    2


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH
Q 013318          257 MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  336 (445)
Q Consensus       257 ~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~  336 (445)
                      .+.+...++...........+.+....+.+.+.+..+......+++.++++++.|++.||+++|+ ......+....+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~  330 (398)
T TIGR00895       252 TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-TALLLLLGAVFAVL  330 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHH
Confidence            22222222211111112222333222234555567888888999999999999999999999873 33332222222221


Q ss_pred             HHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhc
Q 013318          337 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP  407 (445)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~  407 (445)
                        +....++     ....+...+++|++.+...+..++++.+.+|++. +.++|+++....+|..+|+.+.+
T Consensus       331 --~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G  395 (398)
T TIGR00895       331 --VGSTLFS-----PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG  395 (398)
T ss_pred             --HHHHhhC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence              1111222     2345667778899988888889999999998764 55789998988899888876654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.91  E-value=2e-22  Score=198.77  Aligned_cols=354  Identities=13%  Similarity=0.094  Sum_probs=206.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhh-hccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      ++.+...+++++.+..+.....+.|. +.++.+++....    +......++++++.|++.||+|||+++.++.++..+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIP   80 (366)
T ss_pred             CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            34566777777777777777777774 666667766543    3444466788899999999999999999999887776


Q ss_pred             HHHh-hhc-chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          103 VAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       103 ~~~~-~~~-~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      .... ..+ ++..+++.|+++|++.+. ++....+++++.          ++++|+++.+++....++|..+|+.++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        81 CLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFF----------PKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhc----------CHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            6554 567 889999999999999765 455567788886          467899999999888888888887776554


Q ss_pred             hcCccccccccCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCcccCccccc-ccchhhhhHHHHHHHHHHHhhccchhH
Q 013318          181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEKETA-DASVNFYSYLVSLSKSITTLLADVRML  258 (445)
Q Consensus       181 ~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~-l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  258 (445)
                      ......... -....+||...+....++..+..+ ...+.++.+++++++.+ +.+.......++..++..+.+++|+++
T Consensus       150 ~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T TIGR00886       150 IGSLIFGAG-LPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTW  228 (366)
T ss_pred             HHHHHhccc-ccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchh
Confidence            431100000 001235764332333333332222 23344442221111100 000000000011122345677888876


Q ss_pred             HHHHHHHHH-HHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH
Q 013318          259 LIIPLFAYS-GLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  336 (445)
Q Consensus       259 ~l~~~~~~~-g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~  336 (445)
                      ......+.. +.... ....++.++.+ .+.+..+.+.......+..++++++.|++.||+++|+.. ..+.....++..
T Consensus       229 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~~~~~~~  306 (366)
T TIGR00886       229 ILALLYSVTFGSFLG-VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL-LMSFLGVAMGAF  306 (366)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH-HHHHHHHHHHHH
Confidence            554433322 21111 12333333322 244556778888888999999999999999999987643 344433333322


Q ss_pred             HHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHH
Q 013318          337 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCAS  398 (445)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g  398 (445)
                      +......++.+   ....+....+.++..+...+..+++++++.|+++++++|+.+....+|
T Consensus       307 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       307 LVVLGLVSPLS---LAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHhcCCCcch---HHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            11112221101   122223333333334444455567788888888888888888776554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.91  E-value=7.1e-22  Score=200.19  Aligned_cols=359  Identities=10%  Similarity=-0.013  Sum_probs=205.7

Q ss_pred             hhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hh----cchhhHHhHHH
Q 013318           49 NLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF----PSWYTMVPASL  119 (445)
Q Consensus        49 ~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~----~~~~~li~~r~  119 (445)
                      ...|.+.+ .+.+...    .+..+....+++++.|++.||+|||+.+..+.++.++..... ..    +++..+.+.|+
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLF  126 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            34454443 3555443    344455667788999999999999999999887776654432 22    45667778899


Q ss_pred             HhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcch
Q 013318          120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTT  199 (445)
Q Consensus       120 l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~  199 (445)
                      +.|++.+..++....++.++.          |+++||+++|+++...++|..+++.+........          .+||.
T Consensus       127 l~g~~~g~~~~~~~~~i~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~----------~~w~~  186 (438)
T TIGR00712       127 LNGWFQGMGWPPCGRTMVHWW----------SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF----------NDWHA  186 (438)
T ss_pred             HHHHHhhcchHHHHHHHHHhc----------CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh----------hhhHH
Confidence            999999999888888888886          5788999999999999999988887655432211          25764


Q ss_pred             hHHHHHHHHHHHHHH-HHHhccCCcccC---ccc---cc--cc--chhh-hhHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013318          200 LLFIVFLGVITLGTI-LMCFLRKEEDKG---EKE---TA--DA--SVNF-YSYLVSLSKSITTLLADVRMLLIIPLFAYS  267 (445)
Q Consensus       200 ~~~~i~~~l~~~~~~-l~~~l~~~~~~~---~~~---~~--~~--~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  267 (445)
                       .|.+.+++.++..+ ..+++||+++++   +.+   .+  +.  ++.+ +.+.++...  .+.+|+++++......++.
T Consensus       187 -~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  263 (438)
T TIGR00712       187 -ALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFM--QYVLPNKLLWYIAIANVFV  263 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHH--HHHccCchHHHHHHHHHHH
Confidence             45554555444333 335566543211   000   00  00  0000 001111111  1357888887664433332


Q ss_pred             HHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH-HHHhhccCC
Q 013318          268 GLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL-WILINYSVT  345 (445)
Q Consensus       268 g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~-~~~~~~~~~  345 (445)
                      .........+.|.++.+ .+++..+.+.+...++++.++++++.|++.||.++++... .+..+.....+ .......+.
T Consensus       264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  342 (438)
T TIGR00712       264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA-TGVFFMTLVTIAVIVYWMNPA  342 (438)
T ss_pred             HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH-HHHHHHHHHHHHHHHHHhcCC
Confidence            22111122344444432 3556667788888899999999999999999996543232 23222111111 111111111


Q ss_pred             CCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHH-HHHHHHhhc----chhHHHHHHHHH
Q 013318          346 SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCAS-IAVVFFIGP----YISLQAMLIVMV  419 (445)
Q Consensus       346 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g-~~ig~~i~~----~~~~~~~~~i~~  419 (445)
                      ..   ........+.+|++.............+.+|++ ++++.|+++....+| .++++.+.+    ..++...+++++
T Consensus       343 ~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~  419 (438)
T TIGR00712       343 GN---PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  419 (438)
T ss_pred             Cc---hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHH
Confidence            11   122223333444432222222234567888865 556888887776655 345544332    335677778777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013318          420 VGICVALVGILFLTIQ  435 (445)
Q Consensus       420 ~~~~~~~~~~~~~~~~  435 (445)
                      +..+++.+..+++.++
T Consensus       420 ~~~~~~~~~~~~~~~~  435 (438)
T TIGR00712       420 GGSILAVILLIVVMIG  435 (438)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7777777666655443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=1.7e-21  Score=194.59  Aligned_cols=354  Identities=14%  Similarity=0.112  Sum_probs=220.6

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhh-hhccCCCCchHHHHHHH----HHHHHhhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLET-TVNTEGNLGTISLGILY----TSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~~~~g~~~~~~~~----~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      ..+|+++.+.++.++...++....++.+ .+.++.+.+....+...    ....+++++.|+++||+|+|+++.++....
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~   83 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAF   83 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Confidence            4566777777888887777766665544 44455677765544433    345667889999999999999999998877


Q ss_pred             HHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHH
Q 013318          100 WLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (445)
Q Consensus       100 ~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~  178 (445)
                      .+..+.. +.+++..++..|.+.|.+.+...+...++..+..          ++++|++++|+.....++|..+||.++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~lg~~igp~l~~  153 (395)
T PRK10054         84 ASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNL----------SSTSKTKIFSLNYTMLNIGWTVGPPLGT  153 (395)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6654443 6778888888898988888877777777776665          4678999999999999999999999988


Q ss_pred             HhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchh
Q 013318          179 AVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRM  257 (445)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (445)
                      .+.. .           +|+. .|.+.+++.+++.++. +++|+++++++++  +     ++.     ++..+.+|+|++
T Consensus       154 ~l~~-~-----------g~~~-~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~--~-----~~~-----~~~~~~~~~~~~  208 (395)
T PRK10054        154 LLVM-Q-----------SINL-PFWLAAICSAFPLVFIQIWVQRSEKAIATE--T-----GSV-----WSPSVLLQDKAL  208 (395)
T ss_pred             HHHH-h-----------ccCc-HHHHHHHHHHHHHHHHHHHHhccccccccc--h-----hhh-----hhhhhhccCcee
Confidence            7652 1           3654 3445555555544333 3455432211111  0     000     112456788888


Q ss_pred             HHHHHHHHHHHHHHHH---HHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHH
Q 013318          258 LLIIPLFAYSGLQQAF---VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVV  334 (445)
Q Consensus       258 ~~l~~~~~~~g~~~~f---~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~  334 (445)
                      +......+...+....   +...+.....+.+.+....+.+....++.....+...|++.||.++|+ .+..+.++..+.
T Consensus       209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~l~~~~~~~~~~  287 (395)
T PRK10054        209 LWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP-LMTAGTLCFVIG  287 (395)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh-HHHHHHHHHHHH
Confidence            7655433332222111   112222222222333345677777777777777788899999998876 445565555444


Q ss_pred             HHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcc----h
Q 013318          335 FLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPY----I  409 (445)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~----~  409 (445)
                      +..  .....++    .....+...++|++.+...|..++.+.+..|++. +++++.++ ...+|..+|+.+.+.    .
T Consensus       288 ~~~--~~~~~~~----~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~  360 (395)
T PRK10054        288 LVG--FIFSGNS----LLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL  360 (395)
T ss_pred             HHH--HHHcchH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence            321  2222121    2344556778899988888888889999998764 44667554 334566666655533    3


Q ss_pred             hHHHHHHHHHHH
Q 013318          410 SLQAMLIVMVVG  421 (445)
Q Consensus       410 ~~~~~~~i~~~~  421 (445)
                      ++...+.+++++
T Consensus       361 g~~~~~~~~~~~  372 (395)
T PRK10054        361 PPWSLFVILALA  372 (395)
T ss_pred             ChhhHHHHHHHH
Confidence            444445444333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.91  E-value=2.1e-22  Score=198.75  Aligned_cols=345  Identities=12%  Similarity=0.013  Sum_probs=208.2

Q ss_pred             HHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcc
Q 013318           36 AFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPS  110 (445)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~  110 (445)
                      ++++.+..+.......|.+.++.+.+...    .+.......+++++.|++.||+|||+++.++.++..+..+.. ..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   82 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS   82 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence            34455556666666667776665665544    344445667788999999999999999999998877766554 5688


Q ss_pred             hhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhh-HHHHHhhcCcccccc
Q 013318          111 WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN-LITLAVLKDDKVCAA  189 (445)
Q Consensus       111 ~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~-li~~~l~~~~~~~~~  189 (445)
                      +..+++.|++.|++.+..++...+++.++.          ++++|++++|+......+|..+|+ +++..+...      
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------  146 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWF----------SRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------  146 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhc----------CHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------
Confidence            899999999999999999999999999997          467899999999999999999998 455544322      


Q ss_pred             ccCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCcccCc---cccc--cc-c--hh-hhhHHHHHHHHHHHhhccchhHH
Q 013318          190 LLGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGE---KETA--DA-S--VN-FYSYLVSLSKSITTLLADVRMLL  259 (445)
Q Consensus       190 ~~~~~~~w~~~~~~i~~~l~~~~~~l-~~~l~~~~~~~~---~~~~--~~-~--~~-~~~~~~~~~~~~~~~l~~~~~~~  259 (445)
                           .+||. .|.+.+++.++..++ .++.|++++.++   ++..  ++ +  .. ++.+.++......+.+|+|.++.
T Consensus       147 -----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (379)
T TIGR00881       147 -----YSWHW-VFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWY  220 (379)
T ss_pred             -----CCchh-HHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHH
Confidence                 35654 344444444433333 334554322110   0000  00 0  00 00000011112334567887766


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCC-ccchHhHHH-HHHHHHHH
Q 013318          260 IIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPS-ITFIVSGGA-IAQVVVFL  336 (445)
Q Consensus       260 l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~-~~~~i~~g~-~~~~~~~~  336 (445)
                      +....+...........+.+.++.+ .+.+..+.+......+++.++++++.|++.||..+ |+..+.... ....++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  300 (379)
T TIGR00881       221 ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL  300 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            5543333322222222333433322 24555678888889999999999999999998643 332211111 11111111


Q ss_pred             HHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhc
Q 013318          337 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP  407 (445)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~  407 (445)
                        .....+..+   .....+..++.|+......+....+..+.+|++. +.+.|+++....+|..+++.+.+
T Consensus       301 --~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  367 (379)
T TIGR00881       301 --VYWLNPAAN---PLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG  367 (379)
T ss_pred             --HHhcCcchh---HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH
Confidence              111111111   1233444555666544455556678889998764 55789999888888877765554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.90  E-value=6.1e-21  Score=190.44  Aligned_cols=326  Identities=11%  Similarity=0.041  Sum_probs=194.6

Q ss_pred             HHhhhHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhH
Q 013318           43 AYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPA  117 (445)
Q Consensus        43 ~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~  117 (445)
                      +.+......|.+.++.+.+....    +.......+++++.|++.||+|||+.+.++..+..+..... ..+++..+++.
T Consensus        18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~   97 (392)
T PRK10473         18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAG   97 (392)
T ss_pred             HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            33333345566655555555433    33444566788999999999999999999988777665544 56788888889


Q ss_pred             HHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCc
Q 013318          118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSG  197 (445)
Q Consensus       118 r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w  197 (445)
                      |+++|++.+..++...+++.++.          ++++|+++.|+.+....++..+|++++..+...           .+|
T Consensus        98 ~~l~g~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-----------~g~  156 (392)
T PRK10473         98 RFLQGIGAGCCYVVAFAILRDTL----------DDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-----------FPW  156 (392)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cCh
Confidence            99999999999988888998887          467999999999998889999999887765432           356


Q ss_pred             chhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 013318          198 TTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWA  276 (445)
Q Consensus       198 ~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~  276 (445)
                      +. .+.+..++.++..++. +++||++++++++  +     . +   ..++..+.+|+++++..................
T Consensus       157 ~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~-----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (392)
T PRK10473        157 QS-LFYTMAAMGILVLLLSLFILKETRPARAPA--A-----S-S---KPRENSESLLNRFFLSRLVITTLSVTVILTFVN  224 (392)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHcCCCCCcccCC--c-----c-c---hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            53 4445454444444333 4455543221111  0     0 0   011233456777765433322211111111112


Q ss_pred             hhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHH
Q 013318          277 EFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPL  355 (445)
Q Consensus       277 ~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (445)
                      ..+..+. +.+++..+.+..++..+++.++++++.|++.||+++|+. +..+.++..++.+.  +...++.     ...+
T Consensus       225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~--~~~~~~~-----~~~~  296 (392)
T PRK10473        225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL-MLTSQVLFLAAGIT--LALSPSH-----AVSL  296 (392)
T ss_pred             hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHH--HHHHHHH-----HHHH
Confidence            2222221 234555567888889999999999999999999998874 45555544443321  1222221     1222


Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHhhccCCc-hh-hHHHHHHHHHHHHHHHHHhhcchhH
Q 013318          356 IMAALLGIGDGVLNTQLSALLGILFKHDT-EG-AFAQLKVWQCASIAVVFFIGPYISL  411 (445)
Q Consensus       356 ~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~-a~~~~~~~~~~g~~ig~~i~~~~~~  411 (445)
                      ....+.+.+.+...+.  ....++.|+++ ++ +.+.....+.+|..++..+.+..+.
T Consensus       297 ~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~  352 (392)
T PRK10473        297 FGITLICAGFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGI  352 (392)
T ss_pred             HHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2223333332222222  22334455443 33 5567777777887776655554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.90  E-value=1.1e-20  Score=187.04  Aligned_cols=351  Identities=16%  Similarity=0.054  Sum_probs=209.3

Q ss_pred             HHHHHHHhhhHhhhhh-hccCCCCchHHHHHHHHH----HHHhhhhHHHHHHHhCcchhhhhhh-HHHHHHHHH-hhhcc
Q 013318           38 LLIFLAYGAAQNLETT-VNTEGNLGTISLGILYTS----FTCFSLVASLVVRVLGSKNALILGT-TGYWLFVAA-NLFPS  110 (445)
Q Consensus        38 ~~~~~~~~~~~~~~~~-i~~~~~~g~~~~~~~~~~----~ai~~l~~g~l~dr~G~k~~l~~g~-~~~~~~~~~-~~~~~  110 (445)
                      ++...+........|. +.++.+.+....+.....    ..+.+++.|++.||+||||.+++.. ....+.... ...++
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   86 (375)
T TIGR00899         7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRN   86 (375)
T ss_pred             HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcch
Confidence            3334444444444443 445567666555544443    3457788999999999999876544 443444333 35688


Q ss_pred             hhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhh--hhhHHHHHHHHhhhhhhHHHHHhhcCccccc
Q 013318          111 WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGS--FNGEFWGMFASHQFVGNLITLAVLKDDKVCA  188 (445)
Q Consensus       111 ~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~--~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~  188 (445)
                      +..+++.|+++|.+.+...+...++..++.+          +++|++  ..+......++|.++|++++..+...     
T Consensus        87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-----  151 (375)
T TIGR00899        87 YFLLLVLGVLLSSFASTANPQLFALAREHAD----------RTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-----  151 (375)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh----------hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-----
Confidence            8888888999998887777776677766653          334443  35777777889999999888776532     


Q ss_pred             cccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013318          189 ALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS  267 (445)
Q Consensus       189 ~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  267 (445)
                            .+||. .|.+.+++.++..++. +++||++++++++  + +   ..       +..+.+++|+++.+....+..
T Consensus       152 ------~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~-------~~~~~~~~~~~~~~~~~~~~~  211 (375)
T TIGR00899       152 ------FGFTV-MFLTAALAFVLCGVLVWLFLPSYPRGAPGA--L-T---RL-------EVRGLLASRDTRLLFVACTLM  211 (375)
T ss_pred             ------cccHH-HHHHHHHHHHHHHHHHHHhCCCcccCcccc--c-C---cc-------hhhhhhcCcchHHHHHHHHHH
Confidence                  35764 4555555444444433 3466543221111  0 0   00       111245566665433322211


Q ss_pred             HHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCC
Q 013318          268 GLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS  346 (445)
Q Consensus       268 g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~  346 (445)
                      ..........++.++. +.+.+.++.+...........++.++.|++.||+++|+.+ ..+.++..+.+.  .....++ 
T Consensus       212 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~~~~~~~--~~~~~~~-  287 (375)
T TIGR00899       212 WGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM-LLAALAGVAFYT--GLAADNS-  287 (375)
T ss_pred             HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH-HHHHHHHHHHHH--HHHHHHH-
Confidence            1111111223333321 2345555677776666677788889999999999988743 444444333322  1122222 


Q ss_pred             CccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHH
Q 013318          347 GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGI  422 (445)
Q Consensus       347 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~  422 (445)
                          .........+.|++.+...+..++...+..|++++.+.+.++....+|..+++.+.+.    .++...+.+.+++.
T Consensus       288 ----~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~  363 (375)
T TIGR00899       288 ----LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVML  363 (375)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence                1334455667788777777777888889998877778888888888888777666543    35666777777777


Q ss_pred             HHHHHHHHH
Q 013318          423 CVALVGILF  431 (445)
Q Consensus       423 ~~~~~~~~~  431 (445)
                      +++.+...+
T Consensus       364 ~~~~~~~~~  372 (375)
T TIGR00899       364 IVALFCLLL  372 (375)
T ss_pred             HHHHHHHhe
Confidence            777666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=6.8e-21  Score=196.00  Aligned_cols=368  Identities=14%  Similarity=0.081  Sum_probs=210.2

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~  101 (445)
                      .++.+..+.++.++....+.....+.|.+.++.+++...    .+..+....+++++.|++.||+|||+++..+..+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   97 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV   97 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            344555666666665556655566667776666766543    3444556677889999999999999999999887766


Q ss_pred             HHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          102 FVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       102 ~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      .... ...+++..+++.|++.|++.+..++....++.++.          ++++|++++|+......+|..+|+.+...+
T Consensus        98 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893         98 GTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW----------PKHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554 36788999999999999999999998889999887          467899999999999999999999888766


Q ss_pred             hcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhH-----HHHHHH---H-----
Q 013318          181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSY-----LVSLSK---S-----  247 (445)
Q Consensus       181 ~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~-----  247 (445)
                      ...           .+||. .|.+..+..++..+....+|++++.++++.++.+..+..+     .++...   .     
T Consensus       168 ~~~-----------~~w~~-~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (496)
T PRK03893        168 VPV-----------WGWRA-LFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAA  235 (496)
T ss_pred             hcc-----------CCHHH-HHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHH
Confidence            532           35764 3332111111111111223432211111000000000000     000000   0     


Q ss_pred             -HHHhhc----------------------------cch--hHHHHHHHHHHHHHHHH-HHhhhccccc-ccccccchhHH
Q 013318          248 -ITTLLA----------------------------DVR--MLLIIPLFAYSGLQQAF-VWAEFTKEIV-TPALGVSGVGG  294 (445)
Q Consensus       248 -~~~~l~----------------------------~~~--~~~l~~~~~~~g~~~~f-~~~~~~~~~~-~~~~~~~~~g~  294 (445)
                       ....+.                            .++  .........+..+...+ ....+|.++. +.+++..+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~  315 (496)
T PRK03893        236 ALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVAN  315 (496)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHH
Confidence             000000                            000  00000000000000000 1123343332 34566667899


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhH
Q 013318          295 AMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSA  374 (445)
Q Consensus       295 ~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  374 (445)
                      +.+...++.++++++.|++.||+++|+.+ ..+.++..+..+. + ...++..   ........++.+.......+..++
T Consensus       316 ~~~~~~~~~~~g~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~-~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  389 (496)
T PRK03893        316 VLFFSGFGAAVGCCVGGFLGDWLGTRKAY-VCSLLISQLLIIP-V-FAIGGAN---VWVLGLLLFFQQMLGQGISGLLPK  389 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHH-H-hhccccH---HHHHHHHHHHHHHHhcccchhhHH
Confidence            99999999999999999999999988743 4444443333221 1 1121211   122222333333322233456677


Q ss_pred             HHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHH
Q 013318          375 LLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVG  421 (445)
Q Consensus       375 ~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~  421 (445)
                      ++.+.+|++ +++++|+++....+|..+|+.+.+.    .++...+....+.
T Consensus       390 ~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        390 LIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            888999876 4557888888888887777766543    3555555444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.90  E-value=3.4e-20  Score=190.19  Aligned_cols=378  Identities=13%  Similarity=0.053  Sum_probs=217.3

Q ss_pred             CcccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHH--HHHHHHhhhhHHHHHHHh-----Ccchh-hh
Q 013318           22 TPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGIL--YTSFTCFSLVASLVVRVL-----GSKNA-LI   93 (445)
Q Consensus        22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~--~~~~ai~~l~~g~l~dr~-----G~k~~-l~   93 (445)
                      ||.+.+|....+.+++ .............|....+.+.+....+.+  ...-.+.+++.++++||+     ||||. +.
T Consensus         7 ~~~~~~~~~~~~~l~~-~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll   85 (491)
T PRK11010          7 RIFQQPNSAILLILGF-ASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLL   85 (491)
T ss_pred             HHHcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHH
Confidence            4444444444443333 333333333444555555556655444443  112226889999999999     99986 55


Q ss_pred             hhhHHHHHHHHH--hh--hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHh
Q 013318           94 LGTTGYWLFVAA--NL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASH  169 (445)
Q Consensus        94 ~g~~~~~~~~~~--~~--~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg  169 (445)
                      ++.+...+....  +.  .+++..+.+.+++.|++.+...+...++++|+.          |++|||++.++......+|
T Consensus        86 ~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~----------~~~~rg~~~~i~~~g~~lG  155 (491)
T PRK11010         86 ATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVL----------PAEERGAGAAISVLGYRLA  155 (491)
T ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ChhhhHHHHHHHHHHHHHH
Confidence            665555444332  22  246777888899999999999999999999997          4678999999999999999


Q ss_pred             hhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHH
Q 013318          170 QFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT  249 (445)
Q Consensus       170 ~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (445)
                      .++|+.+...+..+.          .|||. .|.+.+++.++..+..+++|||++.++++  + +  .+.+..   ++..
T Consensus       156 ~llg~~l~~~l~~~~----------~GWr~-~f~i~a~l~ll~~l~~~~~~e~~~~~~~~--~-~--~~~~~~---~~l~  216 (491)
T PRK11010        156 MLVSGGLALWLADRY----------LGWQG-MYWLMAALLIPCIIATLLAPEPTDTIPVP--K-T--LEQAVV---APLR  216 (491)
T ss_pred             HHHHHHHHHHHHhcc----------cCHHH-HHHHHHHHHHHHHHHHHhcCCCccccccc--c-c--hhhhHH---HHHH
Confidence            999988877665321          36864 45555555555544445567654321111  0 0  001111   2233


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHH-HHHHHHHHHHhhhhccccCCCCccchHhHH
Q 013318          250 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMA-VYGAFDAICSLAAGRLTTGLPSITFIVSGG  327 (445)
Q Consensus       250 ~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~-~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g  327 (445)
                      +.+++++.+......+.......+...+.++++. ..+++.++.+.+.. ...++.++|.++.|++.||+++|+.++ .+
T Consensus       217 ~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~-i~  295 (491)
T PRK11010        217 DFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALM-IF  295 (491)
T ss_pred             HHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HH
Confidence            4556666554333222222222222233333332 24566677888764 455788999999999999999877443 33


Q ss_pred             HHHHHHHH-HHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHh
Q 013318          328 AIAQVVVF-LWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFI  405 (445)
Q Consensus       328 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i  405 (445)
                      .++..+.. .+..+...++ +   ...+....++..++.+...+...++..++.+++. ++.+|..+....+|..++..+
T Consensus       296 ~~l~~l~~l~~~~l~~~~~-~---~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~  371 (491)
T PRK11010        296 GILQGVSNAGYWLLSITDK-N---LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV  371 (491)
T ss_pred             HHHHHHHHHHHHHHHhccc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            33323221 1111122211 1   1222333334333333333445677778887764 457888888887776543323


Q ss_pred             hc----chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          406 GP----YISLQAMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       406 ~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                      .+    ..++...+.+..++.+++.+...+.++
T Consensus       372 ~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        372 AGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32    235666677777777777776666543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.90  E-value=2.7e-21  Score=199.27  Aligned_cols=352  Identities=13%  Similarity=-0.011  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcc------hhhHHhHHHHhhhhhHHhhhhhhhHHH
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGEGTYLT  137 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~------~~~li~~r~l~Gig~g~~~~~~~~~i~  137 (445)
                      .+.......+++++.|++.||+|||+++.++.+++.+..... ..++      +..+++.|+++|++.|..++....|++
T Consensus        62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~  141 (502)
T TIGR00887        62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS  141 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            344555677889999999999999999999988777655543 3333      678889999999999999999999999


Q ss_pred             HhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccc----------ccc--ccCCCCCcchhHHHHH
Q 013318          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKV----------CAA--LLGGSTSGTTLLFIVF  205 (445)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~----------~~~--~~~~~~~w~~~~~~i~  205 (445)
                      |++          |+++||+++++.+....+|..+|+.++..+......          |..  .....++||. .+.+.
T Consensus       142 e~~----------p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~-~~~~~  210 (502)
T TIGR00887       142 EFA----------TKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI-LIGFG  210 (502)
T ss_pred             Hhc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHH-HHHHH
Confidence            998          578999999999999999999999887654321100          000  0001246874 33333


Q ss_pred             HHHHHHHHHHHHhccCCcc----cCcccc-cc-----------c-chhh-------hhHHHHHHHHHHHhhccchhHHHH
Q 013318          206 LGVITLGTILMCFLRKEED----KGEKET-AD-----------A-SVNF-------YSYLVSLSKSITTLLADVRMLLII  261 (445)
Q Consensus       206 ~~l~~~~~~l~~~l~~~~~----~~~~~~-~~-----------~-~~~~-------~~~~~~~~~~~~~~l~~~~~~~l~  261 (445)
                      .+..++..+..+++||+++    ++++++ .+           . +..+       ....+..+++.++..+.++.+...
T Consensus       211 ~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  290 (502)
T TIGR00887       211 AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHL  290 (502)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHH
Confidence            3333333333457888644    111110 00           0 0000       000001122222111112221111


Q ss_pred             H--HHHHHHHHHHHH-H-hhhcccccccccccchh-----------HH-HHHHHHHHHHHHHhhhhccccCCCCccchHh
Q 013318          262 P--LFAYSGLQQAFV-W-AEFTKEIVTPALGVSGV-----------GG-AMAVYGAFDAICSLAAGRLTTGLPSITFIVS  325 (445)
Q Consensus       262 ~--~~~~~g~~~~f~-~-~~~~~~~~~~~~~~~~~-----------g~-~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~  325 (445)
                      .  ...+.+....++ . .+.|..+.+.+++....           .. ......++.+++.++.+++.||+|||+.+ .
T Consensus       291 ~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l-~  369 (502)
T TIGR00887       291 LGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ-L  369 (502)
T ss_pred             HHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH-H
Confidence            1  111111111111 1 11222222222222111           11 12344556667888899999999998744 4


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHH
Q 013318          326 GGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFF  404 (445)
Q Consensus       326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~  404 (445)
                      .+.++..++.........+...   ........+...++.....+..+.+.+|++|++. +.+.|+.+....+|..++..
T Consensus       370 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~  446 (502)
T TIGR00887       370 MGFFILTVLFFVLGFAYNHLST---HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQF  446 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHH
Confidence            4554444332211111111110   0111111111112222334556677899999884 45788888888888777655


Q ss_pred             hhcch--------------hHHHHHHHHHHHHHHHHHHHHH
Q 013318          405 IGPYI--------------SLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       405 i~~~~--------------~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      +.+++              ++...+.+++++++++++.+++
T Consensus       447 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~  487 (502)
T TIGR00887       447 GFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLL  487 (502)
T ss_pred             HhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheE
Confidence            44332              1234566677776666655543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.89  E-value=1.9e-21  Score=192.91  Aligned_cols=308  Identities=14%  Similarity=0.056  Sum_probs=185.1

Q ss_pred             HHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchh--------hHHhHHHHhhhhhHHhhhhhhhHHHHhhhhh
Q 013318           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (445)
Q Consensus        73 ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~--------~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~  143 (445)
                      .+++++.|++.||+|||+++.++.++..+..... ..+++.        .+++.|+++|++.+..++...+++.++.   
T Consensus        49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~---  125 (394)
T TIGR00883        49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA---  125 (394)
T ss_pred             hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC---
Confidence            4688999999999999999999998877665543 455543        4778999999999999999899999887   


Q ss_pred             hhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc
Q 013318          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  223 (445)
Q Consensus       144 ~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~  223 (445)
                             ++++|+++.++......+|.++|+++...+.......   ....++||. .+.+..++.++...+...++|++
T Consensus       126 -------~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~---~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       126 -------PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD---ALLEWGWRI-PFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             -------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---HhhccchHH-HHHHHHHHHHHHHHHHHhcCCCh
Confidence                   4779999999999989999999988766543211100   001246763 34443333333333223344432


Q ss_pred             ccCcccccccchhhhhHHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHHHHH
Q 013318          224 DKGEKETADASVNFYSYLVSLSKSITTLLADVR--MLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYG  300 (445)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~  300 (445)
                      +.++++.++ + ...       ++..+.+|+++  ++......+..+..........+.++. ..+.+.++.+.......
T Consensus       195 ~~~~~~~~~-~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  265 (394)
T TIGR00883       195 VFEKAQEKH-K-KKR-------GPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSL  265 (394)
T ss_pred             hHHHHHhcc-c-ccc-------CCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence            211111000 0 000       11223344444  443333333322222222233343332 23455567788888899


Q ss_pred             HHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhc
Q 013318          301 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF  380 (445)
Q Consensus       301 i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~  380 (445)
                      ++..+++++.|++.||++||+.++..+.+...+++.. .....++.+   .........+.|++.+...+..++.+.|.+
T Consensus       266 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  341 (394)
T TIGR00883       266 ILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL-LMALLDSGS---FTLFFFLVLGLALIGGMYTGPMGSFLPELF  341 (394)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH-HHHHhcCCc---hHHHHHHHHHHHHHHHHHhhhHHHHHHHhC
Confidence            9999999999999999998875433333322222111 111221111   133445566778888778888899999999


Q ss_pred             cCCc-hhhHHH-HHHHHHHHHHHHHHhhc
Q 013318          381 KHDT-EGAFAQ-LKVWQCASIAVVFFIGP  407 (445)
Q Consensus       381 ~~~~-~~a~~~-~~~~~~~g~~ig~~i~~  407 (445)
                      |++. ++++++ ++....+|..+++.+.+
T Consensus       342 p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       342 PTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             CccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            9764 456665 45555566655555543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=7.7e-21  Score=191.54  Aligned_cols=375  Identities=12%  Similarity=0.064  Sum_probs=208.4

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHhhhhh-hccCCCCchHHHH----HHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHH
Q 013318           27 TRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTISLG----ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (445)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~~~~~----~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~  101 (445)
                      +++++.+.+.+++.+.++....++.+. +.++.+++....+    .......+++++.|++.||+|||++++++..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            457777777777777776554444443 3444677665444    44446677889999999999999999887665443


Q ss_pred             HHHHhh----hcchh-hHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHH
Q 013318          102 FVAANL----FPSWY-TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (445)
Q Consensus       102 ~~~~~~----~~~~~-~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li  176 (445)
                      ......    .+.+. .......+.|+..+..+.+....+.++.++        .++++|+.+|......++|..+|+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~g~~~~~~~~g~~i~~~~  160 (420)
T PRK09528         89 LFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER--------VSRRSGFEYGRARMWGSLGWALCAFI  160 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH--------HHhhccccchhhHHhhhHHHHHHHHH
Confidence            322111    11111 011122333333333333333333444332        13457788888888888999999988


Q ss_pred             HHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccch
Q 013318          177 TLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVR  256 (445)
Q Consensus       177 ~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  256 (445)
                      +..+...            +|+ ..|.+.+++.++..++.+++++++++++++.++++.+++   +...++..+.+|+|+
T Consensus       161 ~g~l~~~------------~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~  224 (420)
T PRK09528        161 AGILFNI------------NPQ-INFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANAS---AVSLKDALALLKLPK  224 (420)
T ss_pred             HHHHHhc------------Cch-HhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccc---cccHHHHHHHccCCC
Confidence            8766421            344 335444444444444444444332221111000000000   112234556788888


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccc----ccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHH
Q 013318          257 MLLIIPLFAYSGLQQAFVWAEFTKE----IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQV  332 (445)
Q Consensus       257 ~~~l~~~~~~~g~~~~f~~~~~~~~----~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~  332 (445)
                      ++.+....+............++.+    +.+.+.+....|.+.+...++..++.++.|++.||+++|+.+ ..+.++..
T Consensus       225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~l~~  303 (420)
T PRK09528        225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL-LLAGTIMA  303 (420)
T ss_pred             eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh-HHHHHHHH
Confidence            7654432222211111111122222    222234445678888888999999999999999999998754 45444444


Q ss_pred             HHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHH-HHHHHHHHHHHHHHhhcc--
Q 013318          333 VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQ-LKVWQCASIAVVFFIGPY--  408 (445)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~-~~~~~~~g~~ig~~i~~~--  408 (445)
                      +...  +..+.++.     ........+.|++.+...+....++.+.+|++.+ +.++. +++...+|..++..+.+.  
T Consensus       304 ~~~~--l~~~~~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~  376 (420)
T PRK09528        304 VRII--GSGFATGP-----LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY  376 (420)
T ss_pred             HHHH--HHHhcccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence            4432  23344332     3344556677777777766777888888887644 34543 666666777666555433  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          409 --ISLQAMLIVMVVGICVALVGILFLT  433 (445)
Q Consensus       409 --~~~~~~~~i~~~~~~~~~~~~~~~~  433 (445)
                        .++...+.+++++.++..+..++..
T Consensus       377 ~~~G~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        377 DSIGFQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence              3566677776666666555555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.89  E-value=5.4e-21  Score=186.43  Aligned_cols=335  Identities=16%  Similarity=0.161  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h
Q 013318           33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L  107 (445)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~  107 (445)
                      +.++.++...++.......+.+.++.+.+....    +.......+++++.|++.||+|||+.+.++..+..+..... .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            344455555555555555666655555554433    33344556788999999999999999999998877666543 5


Q ss_pred             hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccc
Q 013318          108 FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVC  187 (445)
Q Consensus       108 ~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~  187 (445)
                      .+++..+++.|++.|++.+..++...+++.|+.          ++++|++.+++.....++|..+|+.++..+....   
T Consensus        84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---  150 (352)
T cd06174          84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF----------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESL---  150 (352)
T ss_pred             hccHHHHHHHHHHHHcccccccHhHHHHHHHhC----------CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            688899999999999999999999999999997          4679999999999999999999999888775432   


Q ss_pred             ccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013318          188 AALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS  267 (445)
Q Consensus       188 ~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  267 (445)
                              +|+. .+.+..++..+..+...+++                                  |+++......+..
T Consensus       151 --------~~~~-~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~  187 (352)
T cd06174         151 --------GWRW-LFLILAILGLLLALLLLFLL----------------------------------RLLLLLALAFFLL  187 (352)
T ss_pred             --------hHHH-HHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHHH
Confidence                    3543 34444444444444333332                                  1222222211111


Q ss_pred             HHHHHHHHhhhccccccc-ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCC
Q 013318          268 GLQQAFVWAEFTKEIVTP-ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS  346 (445)
Q Consensus       268 g~~~~f~~~~~~~~~~~~-~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~  346 (445)
                      ...........+....+. +.+..+.+......+++..+++++.|++.||.++|+..+..+..+..++.+.  ....++ 
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~-  264 (352)
T cd06174         188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL--LALAPS-  264 (352)
T ss_pred             HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHhcc-
Confidence            111111112233222222 4455678888999999999999999999999998761334555555554432  223322 


Q ss_pred             CccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHH
Q 013318          347 GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVG  421 (445)
Q Consensus       347 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~  421 (445)
                          ....++..++.|++.+...+...+++.+..|++ +++++|.++..+.+|..++..+.+.    .++...+.+..++
T Consensus       265 ----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~  340 (352)
T cd06174         265 ----LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL  340 (352)
T ss_pred             ----HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHH
Confidence                245667788899999999999999999999865 4567899999998888877666543    4566777777777


Q ss_pred             HHHHHHHHH
Q 013318          422 ICVALVGIL  430 (445)
Q Consensus       422 ~~~~~~~~~  430 (445)
                      .+++.+...
T Consensus       341 ~~i~~i~~~  349 (352)
T cd06174         341 ALLAALLLL  349 (352)
T ss_pred             HHHHHHHhe
Confidence            777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.1e-21  Score=197.95  Aligned_cols=239  Identities=15%  Similarity=0.077  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhh
Q 013318           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (445)
Q Consensus        63 ~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~  141 (445)
                      ...+++|..|++++++++.+.||++..+.+....++++++.+. +..+|++.++..|+++|+.++..||+...+++.|. 
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy-  163 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWY-  163 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhc-
Confidence            3468899999999999999999999999999999888887754 46899999999999999999999999999999998 


Q ss_pred             hhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHH-HHHHHhcc
Q 013318          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLG-TILMCFLR  220 (445)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~-~~l~~~l~  220 (445)
                               .++|||+.+|++++..++|.++|++++..+.+..+.     .+..||| +.|++.+++++.. ++..+++|
T Consensus       164 ---------~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~-----~~~~gW~-~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  164 ---------GKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS-----GGLAGWR-WLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             ---------ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC-----CCcCCce-eehhHHHHHHHHHHheEEEEec
Confidence                     468999999999999999999999999887542221     1235785 5677777776644 34446677


Q ss_pred             C-Cccc--Ccccc-------cccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-ccccc
Q 013318          221 K-EEDK--GEKET-------ADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGV  289 (445)
Q Consensus       221 ~-~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~  289 (445)
                      + |++.  .++++       .+++.......+...+...+.+|+|+++...+..++..........+.|.++.+ .+++.
T Consensus       229 ~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~  308 (495)
T KOG2533|consen  229 DNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSE  308 (495)
T ss_pred             CChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcCh
Confidence            5 4321  11111       010000000000233456788999999998887777766544333444444433 22444


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhccccCC
Q 013318          290 SGVGGAMAVYGAFDAICSLAAGRLTTGL  317 (445)
Q Consensus       290 ~~~g~~~~~~~i~~~~g~~~~G~l~d~~  317 (445)
                      .+...+.+.+.++.+++.++.|.++||+
T Consensus       309 ~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  309 LQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            4677788899999999999999999995

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.4e-22  Score=195.64  Aligned_cols=368  Identities=13%  Similarity=0.049  Sum_probs=225.4

Q ss_pred             CCCcCccccccc-ccccccCcccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchH----HHHHHHHHHHHhhhh
Q 013318            4 VDSRDEEAPLVA-DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLV   78 (445)
Q Consensus         4 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~ai~~l~   78 (445)
                      .++.++.+|+.+ +..+..+...+++..+++.+..++.+.+.++...+.+.+.+..+++..    ....+...+.++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl   87 (493)
T KOG1330|consen    8 RTTTSSGNPLIELEGLDHLSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPL   87 (493)
T ss_pred             CCCccCCCcccccccccccccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHH
Confidence            344567777755 444556888899999999999999999988776665555444444432    234556678899999


Q ss_pred             HHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhh
Q 013318           79 ASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGS  157 (445)
Q Consensus        79 ~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~  157 (445)
                      +|++.||++||+++.+|..+|++.+++. +...++++.+.|.+.|+|++...+...++++|.+          ++++|++
T Consensus        88 ~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f----------~~~~Rs~  157 (493)
T KOG1330|consen   88 FGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF----------PDDKRSR  157 (493)
T ss_pred             HHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC----------cchhhhH
Confidence            9999999999999999999999988875 6688999999999999999999999999999998          5789999


Q ss_pred             hhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCcccCcccccccchh
Q 013318          158 FNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVN  236 (445)
Q Consensus       158 ~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l-~~~l~~~~~~~~~~~~~~~~~  236 (445)
                      .+++++.....|..+|.+++..+.....          .|| +-|.+.++++++..++ .++++||++..+++.+...+.
T Consensus       158 ~~~ify~~ipvGsglG~vvgs~va~~~~----------~Wr-~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~  226 (493)
T KOG1330|consen  158 VLGIFYFAIPVGSGLGYVVGSVVASLTF----------WWR-WAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM  226 (493)
T ss_pred             HHHHhhhhcccccceeEEeeeeeccCcc----------ceE-EEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC
Confidence            9999998888888888777766654432          254 4566677777655444 467888876433322211100


Q ss_pred             hhhHHHHHHHHHHHhhccchhHHHHHHHHH-HHHHH--HHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhc
Q 013318          237 FYSYLVSLSKSITTLLADVRMLLIIPLFAY-SGLQQ--AFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGR  312 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~g~~~--~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~  312 (445)
                       ..+.....++.+.+.|+|.+....+.+.. ++...  .+|.+.+.++..+ .+...+.......+...+..+|.+++|.
T Consensus       227 -~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggi  305 (493)
T KOG1330|consen  227 -VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGI  305 (493)
T ss_pred             -CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHH
Confidence             11122234455556666665443332222 22221  2232222222111 1112122233455777888899999999


Q ss_pred             cccCCCC---c-cchH---hHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhh-hhhhhhHHHHhhccCCc
Q 013318          313 LTTGLPS---I-TFIV---SGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV-LNTQLSALLGILFKHDT  384 (445)
Q Consensus       313 l~d~~g~---~-~~~i---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~-~~~~~~~~l~~~~~~~~  384 (445)
                      ++||+.+   + .+..   +.+......+..+ +..++.....  ........+++|....+ .+....-++.++.|.++
T Consensus       306 isd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~-L~~~~~~~~~--s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~  382 (493)
T KOG1330|consen  306 ISDKLSRIFPNSGTLRASQLSAALGAPLSIPF-LFLFPAFTSS--SMIFGLILFLVGETISWFNWATNNPIFLEVVPPSR  382 (493)
T ss_pred             HHHHHHHhcccccchhHHHHHHhhhhhHHHHH-HHHHHhhhhH--HHHHHHHHHHHHHHHHhcccccccceeeEecCccc
Confidence            9998432   1 1111   1111111111111 1122211110  12233445555554333 33444556777777776


Q ss_pred             hh-hHHHHHHHHH
Q 013318          385 EG-AFAQLKVWQC  396 (445)
Q Consensus       385 ~~-a~~~~~~~~~  396 (445)
                      ++ ++++.+.+..
T Consensus       383 Rt~a~a~~~~~~h  395 (493)
T KOG1330|consen  383 RTTAYALDTVFEH  395 (493)
T ss_pred             ccHHHHHHHHHHH
Confidence            64 7876665543

>TIGR00898 2A0119 cation transport protein

Probab=99.89  E-value=3.4e-21  Score=198.74  Aligned_cols=349  Identities=15%  Similarity=0.048  Sum_probs=215.2

Q ss_pred             hhhhhccCCCCc---h----HHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhcchhhHHhHHHHh
Q 013318           50 LETTVNTEGNLG---T----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYL  121 (445)
Q Consensus        50 ~~~~i~~~~~~g---~----~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~~~~~li~~r~l~  121 (445)
                      ..+.+.+|.++.   .    ...+..+....+++++.|++.||+|||+++.++.++..+..+. .+.+++..+++.|++.
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  190 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV  190 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            345555566665   3    2355666677889999999999999999999998887776654 3678999999999999


Q ss_pred             hhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhH
Q 013318          122 GFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLL  201 (445)
Q Consensus       122 Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~  201 (445)
                      |++.+..++...+++.|+.          ++++|+++.++.......|.+++++++..+.              +||. .
T Consensus       191 G~~~~~~~~~~~~~~~e~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~wr~-~  245 (505)
T TIGR00898       191 GMGIGGIWVQAVVLNTEFL----------PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------------DWRW-L  245 (505)
T ss_pred             HhhccchHHHHHHHhheec----------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------HHHH-H
Confidence            9999999999999999987          4678999999998888888888887775432              2653 4


Q ss_pred             HHHHHHHHHHHHHHHHhccCCccc----Cccccccc-------------chh-hhhHHHH---H---HHHHHHhhccchh
Q 013318          202 FIVFLGVITLGTILMCFLRKEEDK----GEKETADA-------------SVN-FYSYLVS---L---SKSITTLLADVRM  257 (445)
Q Consensus       202 ~~i~~~l~~~~~~l~~~l~~~~~~----~~~~~~~~-------------~~~-~~~~~~~---~---~~~~~~~l~~~~~  257 (445)
                      +.+.++..++..+..+++||+++.    .+.++.++             +.. ......+   .   .....+++|+|++
T Consensus       246 ~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (505)
T TIGR00898       246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNL  325 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHH
Confidence            555555555555555677775321    11000000             000 0000000   0   0133456777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHH
Q 013318          258 LLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW  337 (445)
Q Consensus       258 ~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~  337 (445)
                      +......++..+...+.  .+...+....++.+ ........++..+++.++.+++.||+|||+.+ ..+.++..++++.
T Consensus       326 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~-~~~~~~~~~~~l~  401 (505)
T TIGR00898       326 RKTTLCLMMLWFTTAFS--YYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTM-AASLLLAGVALLL  401 (505)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHH
Confidence            65443332222221111  11101111122222 22334466788888999999999999998744 4555554444332


Q ss_pred             HHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch--hHHHH
Q 013318          338 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI--SLQAM  414 (445)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~--~~~~~  414 (445)
                        +.+.++..   ........++.+++.+...+..+++.+|.+|++. +.+.|+.+....+|..+++.+.+..  +....
T Consensus       402 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~  476 (505)
T TIGR00898       402 --LLFVPVDL---YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLP  476 (505)
T ss_pred             --HHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence              22333221   1233344445556666666778899999999874 4578888888888888887666521  23445


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013318          415 LIVMVVGICVALVGILFL  432 (445)
Q Consensus       415 ~~i~~~~~~~~~~~~~~~  432 (445)
                      +.+++++.+++.+..+++
T Consensus       477 ~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       477 LVLFGGLALLAGILTLFL  494 (505)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            566666666665554443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.89  E-value=4.1e-20  Score=185.97  Aligned_cols=383  Identities=10%  Similarity=-0.003  Sum_probs=222.6

Q ss_pred             hHHHHHHHHHHHHHHhhhHh-hhhhhccCCCCchHHHHHH----HHHHHHhhhhHHHHHHHhCc-chhhhhhhHHHHHHH
Q 013318           30 VHILSCAFLLIFLAYGAAQN-LETTVNTEGNLGTISLGIL----YTSFTCFSLVASLVVRVLGS-KNALILGTTGYWLFV  103 (445)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~-~~~~i~~~~~~g~~~~~~~----~~~~ai~~l~~g~l~dr~G~-k~~l~~g~~~~~~~~  103 (445)
                      ...+++-+++.|..+..... +.+.+.++.+++....+.+    .....+++++.|.+.||+|+ |+++.++.++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         4 TAKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            34566666777777665543 3444445566776554444    44556788899999999965 778887777665544


Q ss_pred             HH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhc
Q 013318          104 AA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (445)
Q Consensus       104 ~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~  182 (445)
                      .. .+.+++..+...|++.|++.+...+...+.......+...  |...+..|.|.+|.      +|.++|++++..+..
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~--~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~  155 (418)
T TIGR00889        84 FFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGL--DVVTDFPPIRVMGT------IGFIAAMWAVSLLDI  155 (418)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCC--CchhcCCCeeeehh------HHHHHHHHHHHHhcc
Confidence            43 3567788888899999998776666555443333221110  11122346676663      577777777765521


Q ss_pred             CccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHH
Q 013318          183 DDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP  262 (445)
Q Consensus       183 ~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  262 (445)
                      .           ..|+  .+.+.+++.++..++.+++||+++.++++  +.+  ..+..+   .+..+.+|+|+++.+..
T Consensus       156 ~-----------~~~~--~f~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~--~~~~~~---~~~~~~~k~~~~~~~~~  215 (418)
T TIGR00889       156 E-----------LSNI--QLYITAGSSALLGVFALTLPDIPVAKSTA--KMS--IKVMLG---LDAFILFKNKRMAIFFF  215 (418)
T ss_pred             c-----------chhH--HHHHHHHHHHHHHHHHhcCCCCCCCcccc--ccC--HHHHhh---hhHHHHhcCCCeeeHHH
Confidence            1           1132  23344444444444445666643211111  000  000000   12235688998866555


Q ss_pred             HHHHHHHHHHHHHhhhcccccccc--------cccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHH
Q 013318          263 LFAYSGLQQAFVWAEFTKEIVTPA--------LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVV  334 (445)
Q Consensus       263 ~~~~~g~~~~f~~~~~~~~~~~~~--------~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~  334 (445)
                      ..+..+.........++.+..+.+        ++.+..+...+...+..+++.++.|++.||+|+|+. +..+.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-l~~~~~~~~v~  294 (418)
T TIGR00889       216 FSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-MLLSLVAWALR  294 (418)
T ss_pred             HHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHH
Confidence            444433322222222232222222        234567888899999999999999999999999874 45666665554


Q ss_pred             HHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHH-HHHHHHHHHHHHhhcch---
Q 013318          335 FLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLK-VWQCASIAVVFFIGPYI---  409 (445)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~-~~~~~g~~ig~~i~~~~---  409 (445)
                      +.+  ....+... ......++..++.|++.+...+....++.+.+|++ +++++|+++ ..+++|..+|+.+.+.+   
T Consensus       295 ~~l--~~~~~~~~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~  371 (418)
T TIGR00889       295 FGF--FAYGDPEY-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK  371 (418)
T ss_pred             HHH--HHHcCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            332  22221111 00123455677888888888888888999999876 556889886 56677877776666432   


Q ss_pred             -------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCC
Q 013318          410 -------SLQAMLIVMVVGICVALVGILFL-TIQVEKAFYSPR  444 (445)
Q Consensus       410 -------~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~  444 (445)
                             ++...+++.+++.+++++...+. ..++++.|+|.|
T Consensus       372 ~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  414 (418)
T TIGR00889       372 MFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIKVDDR  414 (418)
T ss_pred             hccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCccc
Confidence                   35566666666655555554444 334445566665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.89  E-value=4.8e-20  Score=183.44  Aligned_cols=337  Identities=11%  Similarity=0.004  Sum_probs=214.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHH----HHHHHHhhhhHHHHHHHhCcchh----hhhhhHHHH
Q 013318           29 DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGIL----YTSFTCFSLVASLVVRVLGSKNA----LILGTTGYW  100 (445)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~ai~~l~~g~l~dr~G~k~~----l~~g~~~~~  100 (445)
                      ....+.+.+++.+.++....++.|.+.+|.+.+....+..    .....+++++.+++.||+|||+.    +..+..++.
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         5 PFRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFA   84 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            3455778888888887777777777777777777655554    33455678889999999997443    333332222


Q ss_pred             HHHHHhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          101 LFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       101 ~~~~~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      +. .....++++.+++.|+++|.+.+...+...++..++            +++|++++|......++|.++|++++..+
T Consensus        85 ~~-~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~------------~~~~~~~~g~~~~~~slG~~~g~~l~g~l  151 (382)
T TIGR00902        85 AA-FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW------------QKQFGLDYGKVRLIGSAAFIIGSALFGGL  151 (382)
T ss_pred             HH-HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH------------HHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            21 112457888888899999999888777766665433            35789999999999999999999988877


Q ss_pred             hcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHH
Q 013318          181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI  260 (445)
Q Consensus       181 ~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  260 (445)
                      ..+           .|||.. |.+...+..+ .++.+.++++.++++++ ++++   .++    .++..+.+|+|+++..
T Consensus       152 ~~~-----------~g~~~~-f~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~---~~~----~~~~~~~l~~~~~~~~  210 (382)
T TIGR00902       152 IGM-----------FDEQNI-LAILTAGLAF-MLIGFLIKPTIPPKDAI-PEDE---SQG----DSAFIALLKNPMNLRF  210 (382)
T ss_pred             HHH-----------cChhHH-HHHHHHHHHH-HHHHHHcCCCCCCCccc-cccc---ccc----chhHHHHHcChHHHHH
Confidence            643           357653 3333322211 22223333321111111 0000   000    1224467889998766


Q ss_pred             HHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHh
Q 013318          261 IPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI  340 (445)
Q Consensus       261 ~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~  340 (445)
                      ....+..........+.++.++.+.+.+.+.+|.......++++++.++.+++.||++.|+ ++..+.++..+.+.  +.
T Consensus       211 l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~-~l~~~~~~~~~~~~--~~  287 (382)
T TIGR00902       211 LAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD-LLLISAIACVGRWA--II  287 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-HHHHHHHHHHHHHH--HH
Confidence            5544433332222334555555445566667898888899999999999999999999887 45677777666643  23


Q ss_pred             hccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHH-HHHHHHHHHHHhhcc
Q 013318          341 NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKV-WQCASIAVVFFIGPY  408 (445)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~-~~~~g~~ig~~i~~~  408 (445)
                      .+.++     ...++....+.|+..+...+....++.+. |++ ++...++++. ...+|..+|..+++.
T Consensus       288 ~~~~~-----~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       288 GAIEA-----FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HhHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34433     24566678889999999988888888887 654 4445677763 345666666655544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.89  E-value=4.4e-20  Score=208.49  Aligned_cols=319  Identities=15%  Similarity=0.123  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH----hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~----~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      .+++...+.++++++|+++||+|||++++++.++..+..+.    ...+++..+++.|+++|++.+..+++..++++++.
T Consensus        53 ~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  132 (1146)
T PRK08633         53 NALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELV  132 (1146)
T ss_pred             HHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhc
Confidence            34455567788999999999999999999988765443332    23467889999999999999999999999999997


Q ss_pred             hhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                                ++++|++++|+.....++|.++|++++..+........  ..+..+|+...+.+...+.++++++.+++|
T Consensus       133 ----------~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (1146)
T PRK08633        133 ----------GKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNT--PSEILGRIAPAGLVLLAVAVLGLIFAYRLP  200 (1146)
T ss_pred             ----------CcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccccccchHHHHHHHHHHHHHHHHHHhcCc
Confidence                      46899999999999999999999999887754310000  000012222222222222222333334555


Q ss_pred             CCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccc-hhHHHHHH
Q 013318          221 KEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVS-GVGGAMAV  298 (445)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~-~~g~~~~~  298 (445)
                      +.++...+...+..   ....++..+....++++|.++......+............++.++.. .+++.. ..|++.+.
T Consensus       201 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~  277 (1146)
T PRK08633        201 KVPAAAPEVFDKKK---YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAA  277 (1146)
T ss_pred             CCCCCCcccccccc---cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHH
Confidence            53321111100000   00111112233445677776654433332222222222334433321 344555 67888899


Q ss_pred             HHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 013318          299 YGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGI  378 (445)
Q Consensus       299 ~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~  378 (445)
                      .+++.++++++.|++.||.++++.+ .++.++..++++  .+.+.++     ....++..+++|++.+...+..++++.+
T Consensus       278 ~~ig~~~g~~~~g~l~~r~~~~~~~-~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~  349 (1146)
T PRK08633        278 SAIGIGIGSLLAGRLSGRHIELGLV-PLGALGLALSLF--LLPTAPS-----LASVLVLFFLFGFSAGLFIVPLNALIQF  349 (1146)
T ss_pred             HHHHHHHHHHHHHHHhCCceEccch-hHHHHHHHHHHH--HHHHhhh-----HHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence            9999999999999999999877643 455554444432  2223322     2345567788899888888888899999


Q ss_pred             hccCC-chhhHHHHHHHHHHHHHHHHHhh
Q 013318          379 LFKHD-TEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       379 ~~~~~-~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      ..|++ +++++|++++.+.+|..++..+.
T Consensus       350 ~~p~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        350 RAPEKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             cCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            98876 55688988888888875554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.89  E-value=4.6e-20  Score=208.09  Aligned_cols=311  Identities=15%  Similarity=0.058  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhh---HHHHHHHH-HhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGT---TGYWLFVA-ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~---~~~~~~~~-~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      .+.....++++++++|+++||+|||+++....   +.+..... +...++++.+++.|+++|++.+..+++..+++.++.
T Consensus        58 ~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~  137 (1140)
T PRK06814         58 GAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHL  137 (1140)
T ss_pred             HHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhc
Confidence            44455667889999999999999999864322   22222222 234588999999999999999999999999999997


Q ss_pred             hhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                                ++++|++++|+..+..++|.++|+++++.+....           +|+. .|+...++.+++.++.++++
T Consensus       138 ----------~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~  195 (1140)
T PRK06814        138 ----------NKDELLGANALVEAGTFIAILLGTIIGGLATISG-----------NFVI-LVALLMGIAVLGWLASLFIP  195 (1140)
T ss_pred             ----------CccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-----------ccHH-HHHHHHHHHHHHHHHHhhCC
Confidence                      5789999999999999999999999998876432           4653 33222222333333445566


Q ss_pred             CCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHH
Q 013318          221 KEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVY  299 (445)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~  299 (445)
                      ++++.+.+. .. +   ....++.........++|.++.....++...+..+....++|.++.+ .+.+....|++++.+
T Consensus       196 ~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~  270 (1140)
T PRK06814        196 KTGNAAPDL-KI-D---RNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVF  270 (1140)
T ss_pred             CCCCCCCCC-ee-c---cchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHH
Confidence            543211111 00 0   00111112233445677877766655444443333333445544422 244556788999999


Q ss_pred             HHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhc----------------cCCCCccchhHHHHHHHHHhh
Q 013318          300 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINY----------------SVTSGVLGTLYPLIMAALLGI  363 (445)
Q Consensus       300 ~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~G~  363 (445)
                      +++.++|+++.|+++|+..+++.+ ..+.++..++.+.+....                ....+   ...+++..+++|+
T Consensus       271 ~~g~~ig~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~  346 (1140)
T PRK06814        271 SVGVAVGSFLASKLSEGRITLLYV-PIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH---GWRILIDLFGLAA  346 (1140)
T ss_pred             HHHHHHHHHHHHHHhCCceeeeee-hHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc---cHHHHHHHHHHHH
Confidence            999999999999999887665533 333333322221111110                00011   1344566778899


Q ss_pred             hhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhh
Q 013318          364 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       364 ~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      +.+...+..++++.+..|++ +++++|.+++...+|..++..+.
T Consensus       347 ~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~  390 (1140)
T PRK06814        347 AGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL  390 (1140)
T ss_pred             HHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence            99988888999999999876 56689998888888777665444

>TIGR00896 CynX cyanate transporter

Probab=99.88  E-value=1.3e-20  Score=185.42  Aligned_cols=319  Identities=11%  Similarity=0.064  Sum_probs=198.6

Q ss_pred             hHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhhhcchhhHHhHHHHhh
Q 013318           47 AQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLG  122 (445)
Q Consensus        47 ~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~~~~~~~li~~r~l~G  122 (445)
                      ...+.|.+.++.+.+....    +..+..+.+++++.|++.||+|+|+++.++.++.++..+....++...+++.|++.|
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g   98 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIG   98 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3456677777777776543    444556678889999999999999999999877665554445678888889999999


Q ss_pred             hhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHH
Q 013318          123 FAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLF  202 (445)
Q Consensus       123 ig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~  202 (445)
                      +|.+...+....++.++.           +++|++++|++.....+|..+|+++...+.....         .+||. .|
T Consensus        99 ~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~---------~~w~~-~f  157 (355)
T TIGR00896        99 VGIAIINVLLPSLIKRDF-----------PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG---------GHWQQ-AL  157 (355)
T ss_pred             HHHHHHhccchHHHHHhC-----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHH-HH
Confidence            999988877777776664           4689999999999999999999988766643321         13653 33


Q ss_pred             HHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 013318          203 IVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI  282 (445)
Q Consensus       203 ~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~  282 (445)
                      ....++.++.  +..++++.+++++++.+.    ..       +..++.+|+|+++.....+............+.|.++
T Consensus       158 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~  224 (355)
T TIGR00896       158 AWWALPALLA--LLAWIPQVRRRVAANQTT----TR-------LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAIL  224 (355)
T ss_pred             HHHHHHHHHH--HHHHhhhhccccCCCCCC----CC-------CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322222  123344322111111000    00       0122456777776544333322221111223444444


Q ss_pred             cccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHh
Q 013318          283 VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  362 (445)
Q Consensus       283 ~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  362 (445)
                      .+.+.+.++.+...+.++++.++++++.|++.||+++|+..+..+..+..++.+.  +.+.++.     .. ....+++|
T Consensus       225 ~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~-~~~~~l~g  296 (355)
T TIGR00896       225 ISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCG--LLFAPMH-----GL-WAWALVLG  296 (355)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH--HHHhhhh-----HH-HHHHHHHH
Confidence            4445666678888999999999999999999999955444444555554444321  2233221     11 12456789


Q ss_pred             hhhhhhhhhhhHHHHhhccCC-c-hhhHHHHHHHHHHHHHHHHHhhc
Q 013318          363 IGDGVLNTQLSALLGILFKHD-T-EGAFAQLKVWQCASIAVVFFIGP  407 (445)
Q Consensus       363 ~~~~~~~~~~~~~l~~~~~~~-~-~~a~~~~~~~~~~g~~ig~~i~~  407 (445)
                      ++.+...+...+.+.+..+++ + +.++++.+....++..+++.+.+
T Consensus       297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G  343 (355)
T TIGR00896       297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVG  343 (355)
T ss_pred             HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888887777776666543 3 33567777666666666654443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.2e-20  Score=179.13  Aligned_cols=379  Identities=13%  Similarity=0.057  Sum_probs=241.0

Q ss_pred             cCcccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcchhhhhhh
Q 013318           21 LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGT   96 (445)
Q Consensus        21 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k~~l~~g~   96 (445)
                      .+++...||.+.-.+++.+.|......+.+.+.+.++.+++..+.+.+..    .-++.-++.|.+.||+|.|++..++.
T Consensus         7 ~~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~   86 (417)
T COG2223           7 RGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM   86 (417)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH
Confidence            45567788888888888888888888888888888888888876555444    33455678999999999999999998


Q ss_pred             HHHHHHHHH-h---hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhh
Q 013318           97 TGYWLFVAA-N---LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFV  172 (445)
Q Consensus        97 ~~~~~~~~~-~---~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~i  172 (445)
                      ++..+-... .   ..+++++++..+++.|++.+..-+ ...+++++.          ||+++|.++|++. .-++|..+
T Consensus        87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav-~m~~~s~~f----------P~~~qG~AlGI~g-~GN~G~av  154 (417)
T COG2223          87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAV-GMPNASFFF----------PKEKQGLALGIAG-AGNLGVAV  154 (417)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehc-ccccccccC----------ChhhhhHHHHHhc-cccccHHH
Confidence            876553332 1   245667899999999998765444 456777776          6789999999987 67777777


Q ss_pred             hhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCccc-CcccccccchhhhhHHHHHHHHHHH
Q 013318          173 GNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDK-GEKETADASVNFYSYLVSLSKSITT  250 (445)
Q Consensus       173 G~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  250 (445)
                      -.+++..+.....        .-.|+ ....++.+..++..++. +..+|.++. ++.+  +     ..+     .+.+.
T Consensus       155 ~q~~~P~v~~~~g--------~~~w~-~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~--~-----~~~-----~~~~~  213 (417)
T COG2223         155 AQLVAPLVAVAFG--------FLAWR-NVAGIYVVALAIAAVLAWLGMNDVPEHRASVK--P-----QLP-----AQLKA  213 (417)
T ss_pred             HHHHHHHHHHHHh--------hHHHH-HHHHHHHHHHHHHHHHHHHHhCCChhhhcccc--c-----cch-----hHHHH
Confidence            6666665543321        00144 34445555555555544 445543221 1111  0     000     22334


Q ss_pred             hhccchhHHHHHHHHH-HHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHH
Q 013318          251 LLADVRMLLIIPLFAY-SGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA  328 (445)
Q Consensus       251 ~l~~~~~~~l~~~~~~-~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~  328 (445)
                      ..++|+.|.+...++. .|-+.++ ..+++.++.+ -+++....|.....+.+...+.++.+|+++||+|.++.. ....
T Consensus       214 v~~~~~~W~lsllY~~tFG~Fvgf-s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~-~~~f  291 (417)
T COG2223         214 VFSNKDTWLLSLLYFATFGGFVGF-SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT-LAVF  291 (417)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH-HHHH
Confidence            5678888877654332 2222222 2455554432 344555677888889999999999999999999987643 3444


Q ss_pred             HHHHHHHHHHHhhccCCCCc--cchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHH-----HH
Q 013318          329 IAQVVVFLWILINYSVTSGV--LGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASI-----AV  401 (445)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~-----~i  401 (445)
                      ...+++..  .+.+.++...  .............+++.+..+...+.++..++|++.+.+.|+......+|.     .+
T Consensus       292 ~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~  369 (417)
T COG2223         292 VGMALAAA--LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAF  369 (417)
T ss_pred             HHHHHHHH--HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHH
Confidence            44333322  1223321110  001223333444555555666666788889998887776677666666663     33


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          402 VFFIGPYISLQAMLIVMVVGICVALVGILFLTIQV  436 (445)
Q Consensus       402 g~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  436 (445)
                      +...+..-++...++++..+.+++.+.......|.
T Consensus       370 g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         370 GVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44455555788889998888888887666554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.88  E-value=7.4e-20  Score=182.07  Aligned_cols=335  Identities=13%  Similarity=0.010  Sum_probs=204.7

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcc----hhhhhhhHHHHHHHH
Q 013318           33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSK----NALILGTTGYWLFVA  104 (445)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k----~~l~~g~~~~~~~~~  104 (445)
                      ....+++++.++....++.|...+|.+.+....+....    ...+++++.|++.||+|||    +.+.++.....+ ..
T Consensus         9 ~~~~~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~   87 (382)
T PRK11128          9 LALSYFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-AF   87 (382)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-HH
Confidence            34446666666665566666666666777665555444    4456688899999999984    333333222111 11


Q ss_pred             HhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCc
Q 013318          105 ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (445)
Q Consensus       105 ~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~  184 (445)
                      ....++++.+++.|.+.|++.+..++...+++.++.            ++|++++|.......+|.++||+++..+..+ 
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~------------~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-  154 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ------------KQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-  154 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHH------------hhccCCcchHHHHHHHHHHHHHHHHHHHHHH-
Confidence            123578888888999999999888888776666552            4578888888888899999999999887643 


Q ss_pred             cccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHH
Q 013318          185 KVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLF  264 (445)
Q Consensus       185 ~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  264 (445)
                                .+||. .|++.++..++..+..++.|+++++++++  + +  . ++   ..++..+.+|+|+++......
T Consensus       155 ----------~g~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~-~~---~~~~~~~i~~~~~~~~~~~~~  214 (382)
T PRK11128        155 ----------FGEQA-ILWILTAGVASMLLGQLLRPTIMPQGESR--Q-Q--E-SA---GWPAWKALLKEPTVWRFLLCV  214 (382)
T ss_pred             ----------cChhH-HHHHHHHHHHHHHHHHHccCCCCCccccc--c-c--c-cc---ccchHHHHHcChhHHHHHHHH
Confidence                      35764 34443333223322223334322111111  0 0  0 00   012344678899887665544


Q ss_pred             HHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccC
Q 013318          265 AYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV  344 (445)
Q Consensus       265 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~  344 (445)
                      +..+.......+.++.+..+.+.+.++.|.......++.++..++.|++.||.++|+. +..+.++..++++  ...+.+
T Consensus       215 ~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-l~~~~~~~~~~~~--~~~~~~  291 (382)
T PRK11128        215 SLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL-LLLSAICGVVRWG--LMGSTT  291 (382)
T ss_pred             HHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHH--HHHhhh
Confidence            4333222222233333333345565678888888888999999999999999998874 4566665555543  233343


Q ss_pred             CCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHH-HHHHHHHHHHHHhhcch
Q 013318          345 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLK-VWQCASIAVVFFIGPYI  409 (445)
Q Consensus       345 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~-~~~~~g~~ig~~i~~~~  409 (445)
                      +     +...++..+++|++.+...+....++.+..++++++..+.++ ....+|..+|+.+.+.+
T Consensus       292 ~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        292 A-----LPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2     244566788889988888887778887775556655677665 33445556666555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.88  E-value=1.4e-19  Score=181.60  Aligned_cols=345  Identities=12%  Similarity=0.048  Sum_probs=211.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHH
Q 013318           29 DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA  104 (445)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~  104 (445)
                      .++++.+.+++.-..+.....+.|.+.++.+++....    +..+..+.+++++.|++.||+|||+++.++..++.+..+
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3455555555555454444567777777777776543    444556678889999999999999999999988776555


Q ss_pred             Hh----hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          105 AN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       105 ~~----~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      ..    ..+++..++..|++.|+|.|..+++.+.++.+..          ++++|++.+++.+.+.++|..+|++++..+
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG----------PESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43    2367888999999999999999999999998886          467899999999999999999999988766


Q ss_pred             hcCcccc-cc-cc-------------CCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHH
Q 013318          181 LKDDKVC-AA-LL-------------GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS  245 (445)
Q Consensus       181 ~~~~~~~-~~-~~-------------~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (445)
                      ....... +. ..             ....+|| ..|.+.+++.++..++..+.+.|+.+++++  + +    .+.++  
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~--~-~----~~~~~--  223 (410)
T TIGR00885       154 ILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQ-TPYMIIGAVVLAVALLIMLTKMPALNHSDA--K-Q----ISFSA--  223 (410)
T ss_pred             HhcCCccchhhhhhhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCcccc--c-c----ccchh--
Confidence            4321000 00 00             0012465 345444444333332222333333211111  1 0    01111  


Q ss_pred             HHHHHhhccchhHHH-HHHHHHHHHHHHHHHhhhccccccccccc--chhHHHHHHHHHHHHHHHhhhhccccCCCCccc
Q 013318          246 KSITTLLADVRMLLI-IPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITF  322 (445)
Q Consensus       246 ~~~~~~l~~~~~~~l-~~~~~~~g~~~~f~~~~~~~~~~~~~~~~--~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~  322 (445)
                       +..+.+|+|+++.. ...+++.|.+.+.+ ++++.+..+.+.+.  ...+.....+..+..+|+++.+++.||+++|+.
T Consensus       224 -~~~~~~~~~~~~~~~l~~f~yvg~e~~~~-s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~  301 (410)
T TIGR00885       224 -SLSRLARIRHYREGVIAQFFYVGVQIMCW-TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV  301 (410)
T ss_pred             -hHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence             12245678877653 34556677765443 44444432222222  223445556667788999999999999988874


Q ss_pred             hHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHH
Q 013318          323 IVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVV  402 (445)
Q Consensus       323 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig  402 (445)
                       +..+.++..++.++  ..+.++      .....+.++.|++.+...|+++++..+..+++..++.+..... .+|.++.
T Consensus       302 -l~i~~~~~~~~~ll--~~~~~~------~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~-~~Gga~~  371 (410)
T TIGR00885       302 -LMAYAIIGMALCLG--SIFAGG------HVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA-IIGGGIV  371 (410)
T ss_pred             -HHHHHHHHHHHHHH--HHHcCC------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-HhccchH
Confidence             44554444444322  223322      1234556667788877789999999999887755432222121 2555554


Q ss_pred             HHh
Q 013318          403 FFI  405 (445)
Q Consensus       403 ~~i  405 (445)
                      +.+
T Consensus       372 p~l  374 (410)
T TIGR00885       372 PPL  374 (410)
T ss_pred             HHH
Confidence            433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.87  E-value=1e-18  Score=178.69  Aligned_cols=401  Identities=9%  Similarity=0.031  Sum_probs=227.6

Q ss_pred             CcccccchhHHHHHHHHHHHHHHhhhHh-hhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHH-hCcchhhhhh
Q 013318           22 TPKNYTRDVHILSCAFLLIFLAYGAAQN-LETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRV-LGSKNALILG   95 (445)
Q Consensus        22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr-~G~k~~l~~g   95 (445)
                      |.++.+|.++.+....++.-.+|+.... +...+.++.+++....    +.......+..+++|++.|| +||||++.+|
T Consensus         8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207          8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence            4455667777777777777666665553 3344444455554433    22333444566789999999 9999999999


Q ss_pred             hHHHHHHHHHh-hhcc-hhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhh
Q 013318           96 TTGYWLFVAAN-LFPS-WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG  173 (445)
Q Consensus        96 ~~~~~~~~~~~-~~~~-~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG  173 (445)
                      .+++.+....+ ..++ ...++.+|+++|+|.|...+...+++++..|+        ++++|++.++++....++|..+|
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~--------~~~~~~~~~~~~~~~~nig~~~g  159 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPP--------KDPRLDGAFTLFYMSINIGSLIS  159 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCC--------CchhhhcchhHHHHHHHHHHHHH
Confidence            99888766544 4444 33455789999999999999989999998852        12266888999999999999999


Q ss_pred             hHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc----cCccc-ccccch-------------
Q 013318          174 NLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED----KGEKE-TADASV-------------  235 (445)
Q Consensus       174 ~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~----~~~~~-~~~~~~-------------  235 (445)
                      +.++..+..+           .|||. .|.+..+...++++..++.++..+    +++++ .+....             
T Consensus       160 ~~l~g~l~~~-----------~gw~~-~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~  227 (489)
T PRK10207        160 LSLAPVIADK-----------FGYSV-TYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFV  227 (489)
T ss_pred             HHHHHHHHHh-----------hChHH-HHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHH
Confidence            9999887643           35764 344433322333333333332111    11000 000000             


Q ss_pred             ----hhhhHHHH----------------HHHHHHHhhccchhHHHHHH----HHHHHHHHH-HHHhhhccc-cccccccc
Q 013318          236 ----NFYSYLVS----------------LSKSITTLLADVRMLLIIPL----FAYSGLQQA-FVWAEFTKE-IVTPALGV  289 (445)
Q Consensus       236 ----~~~~~~~~----------------~~~~~~~~l~~~~~~~l~~~----~~~~g~~~~-f~~~~~~~~-~~~~~~~~  289 (445)
                          .+......                ..++..+..|+|.+......    .++..+.+. +..+.+.+. ......|.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~  307 (489)
T PRK10207        228 CAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGF  307 (489)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccce
Confidence                00000000                00000123344433322211    111112221 111222221 11011122


Q ss_pred             c-hhHHHHHHHHHHHHHHHhhhhccccCCCCccc------hHhHHHHHHHHHHHHHH---hhccCCCCccchhHHHHHHH
Q 013318          290 S-GVGGAMAVYGAFDAICSLAAGRLTTGLPSITF------IVSGGAIAQVVVFLWIL---INYSVTSGVLGTLYPLIMAA  359 (445)
Q Consensus       290 ~-~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~------~i~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  359 (445)
                      . ....+.....+..++.+++.+++.||+++|+.      .+..|.++..++++...   ...................+
T Consensus       308 ~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~  387 (489)
T PRK10207        308 SINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYL  387 (489)
T ss_pred             EECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHH
Confidence            1 22334445667777888889999999987752      23567666555543110   11221111111234556788


Q ss_pred             HHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch--------------hHHHHHHHHHHHHHH
Q 013318          360 LLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI--------------SLQAMLIVMVVGICV  424 (445)
Q Consensus       360 l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~--------------~~~~~~~i~~~~~~~  424 (445)
                      +.|+|..+..+...+...+..|++. +.+.|++++.+.+|..+|..++...              .+.+.+..+++..++
T Consensus       388 l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  467 (489)
T PRK10207        388 FQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLG  467 (489)
T ss_pred             HHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHH
Confidence            8999999999999999999999875 4578899888888888776554211              244556666665555


Q ss_pred             HHHHHHHHHHHHHhhhcC
Q 013318          425 ALVGILFLTIQVEKAFYS  442 (445)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~  442 (445)
                      ..+.++...++.+|....
T Consensus       468 ~~v~~~~~~~~~~~~~~~  485 (489)
T PRK10207        468 VAVVMALMVPWLNRMINT  485 (489)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            555555555656555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.86  E-value=6.2e-19  Score=176.25  Aligned_cols=366  Identities=13%  Similarity=0.093  Sum_probs=206.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhh-ccCCCCchHHHHH----HHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTV-NTEGNLGTISLGI----LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~~~~g~~~~~~----~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      ++++.+....++.+.++....++.|.. .++.+.+....+.    ......+++++.|++.||+|||+.++.+...+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            567777777777777766665555543 3445666655443    44456678889999999999999998877655432


Q ss_pred             HHHh----hhc-----chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhh
Q 013318          103 VAAN----LFP-----SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG  173 (445)
Q Consensus       103 ~~~~----~~~-----~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG  173 (445)
                      ....    ..+     .+..+++.|++.|++.+...+....+..+..            +++++.+|......++|.++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~~~g~~~~~~~~g~~~g  149 (396)
T TIGR00882        82 FAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS------------RNSNFEYGKARMFGCVGWALC  149 (396)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh------------hhcccccchhhhhcccHHHHH
Confidence            2211    111     2233455677888877766666555544432            234556677667778889999


Q ss_pred             hHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhc
Q 013318          174 NLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLA  253 (445)
Q Consensus       174 ~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (445)
                      ++++..+..            .+|+. .|.+.+++.++..++.++.++++++++++.++.+..++   ++..++..+.+|
T Consensus       150 ~~~~g~l~~------------~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~  213 (396)
T TIGR00882       150 ASIAGILFS------------IDPQI-VFWLGSGFALILMLLLMFAKPKAPSSATVANALGANAS---AFSLKLALELFR  213 (396)
T ss_pred             HHHHhhhhc------------cCchH-HHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccC---CCCHHHHHHHHc
Confidence            988776532            24653 45444554544443334433222111111000000000   011234557788


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhccc----ccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHH
Q 013318          254 DVRMLLIIPLFAYSGLQQAFVWAEFTKE----IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAI  329 (445)
Q Consensus       254 ~~~~~~l~~~~~~~g~~~~f~~~~~~~~----~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~  329 (445)
                      ||+++...+..+...........+++.+    +.+.+.+....|.......+...++.+..|++.||+++|+. +..+.+
T Consensus       214 ~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~-l~~~~~  292 (396)
T TIGR00882       214 QRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA-LLIAGT  292 (396)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHH
Confidence            9987655443322221111111122222    11223444567888888888999999999999999998874 445555


Q ss_pred             HHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHH-HHHHHHHHHHHHHHhhc
Q 013318          330 AQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQ-LKVWQCASIAVVFFIGP  407 (445)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~-~~~~~~~g~~ig~~i~~  407 (445)
                      +..+...  ...+.++.     ...++..++.|++..........+..+..|++.+ ++.+. ++....+|..++..+.+
T Consensus       293 l~~l~~~--~~~~~~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G  365 (396)
T TIGR00882       293 IMSVRII--GSSFATTA-----LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG  365 (396)
T ss_pred             HHHHHHH--HHHhcCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence            5444432  22333332     3345556677777655554445556666665533 34554 66777777777654443


Q ss_pred             c----hhHHHHHHHHHHHHHHHHHHH
Q 013318          408 Y----ISLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       408 ~----~~~~~~~~i~~~~~~~~~~~~  429 (445)
                      +    .++...+.+.+++.+++...-
T Consensus       366 ~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       366 NMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            3    356677777666655555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.86  E-value=1.7e-18  Score=173.52  Aligned_cols=349  Identities=14%  Similarity=0.102  Sum_probs=202.2

Q ss_pred             hhhhhccCCCCchHHHHHHHHHH--HHhhhhHHHHHHHh-----Ccch-hhhhhhHHHHHHHHH-hhh---cchhhHHhH
Q 013318           50 LETTVNTEGNLGTISLGILYTSF--TCFSLVASLVVRVL-----GSKN-ALILGTTGYWLFVAA-NLF---PSWYTMVPA  117 (445)
Q Consensus        50 ~~~~i~~~~~~g~~~~~~~~~~~--ai~~l~~g~l~dr~-----G~k~-~l~~g~~~~~~~~~~-~~~---~~~~~li~~  117 (445)
                      ..|...+|.+.+....+.+....  .+.+++.|+++||+     |||| .+.++..+.++.... .+.   ++++.++..
T Consensus        21 ~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~  100 (402)
T PRK11902         21 TLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGL  100 (402)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            34555667787777665554422  46788999999999     8876 577766665544433 232   356667777


Q ss_pred             HHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCc
Q 013318          118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSG  197 (445)
Q Consensus       118 r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w  197 (445)
                      .++.++..+...++..+++.++.          +++||+++.++....+.+|..+|+.+...+....          .+|
T Consensus       101 ~~~~~~~~~~~~~~~~al~~~~~----------~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~----------~gw  160 (402)
T PRK11902        101 AVLVAFLSASQDIVFDAYSTDVL----------HPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV----------LGW  160 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----------ChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc----------cCH
Confidence            77888888889999999999997          4678999999999989999999988777665321          368


Q ss_pred             chhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhh
Q 013318          198 TTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAE  277 (445)
Q Consensus       198 ~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~  277 (445)
                      |. .|.+.+++.++..+..+++|||++.++++  + +  ...+   ..++..+.+|+|+++......+.......+....
T Consensus       161 ~~-~f~i~a~~~l~~~l~~~~~~e~~~~~~~~--~-~--~~~~---~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~  231 (402)
T PRK11902        161 GN-TYLLMAGLMLAGALTTLWAPEPEVPARPP--R-S--LGEA---VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSL  231 (402)
T ss_pred             HH-HHHHHHHHHHHHHHHHHhcCCCccccccc--c-h--hHHH---HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHH
Confidence            64 45454554444433335566654322111  0 0  0011   1223445778888765544333322221111112


Q ss_pred             hcccc-cccccccchhHHHHHHHH-HHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH-HHHhhccCCCCccchhHH
Q 013318          278 FTKEI-VTPALGVSGVGGAMAVYG-AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL-WILINYSVTSGVLGTLYP  354 (445)
Q Consensus       278 ~~~~~-~~~~~~~~~~g~~~~~~~-i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~  354 (445)
                      .+..+ .+.+++.++.|.+....+ ++.+++.++.|++.||+++|+.+ ..+.++..+..+ +..+...+++    ....
T Consensus       232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l-~~~~~~~~l~~l~~~~~~~~~~~----~~~~  306 (402)
T PRK11902        232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL-MLFGVLQAVSNLGYWVLAVTPKH----LWTM  306 (402)
T ss_pred             HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhcCCc----HHHH
Confidence            22222 224556667788776555 45789999999999999987744 344433332211 1112232222    1222


Q ss_pred             HHHH----HHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHH----HHHHhhcchhHHHHHHHHHHHHHHHH
Q 013318          355 LIMA----ALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIA----VVFFIGPYISLQAMLIVMVVGICVAL  426 (445)
Q Consensus       355 ~~~~----~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~----ig~~i~~~~~~~~~~~i~~~~~~~~~  426 (445)
                      +...    +..|++.+...+....++.+.+|.+   .++.+....++|..    ++-.+.+..++...+.+.++++++++
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~  383 (402)
T PRK11902        307 ALAIGIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGL  383 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            2222    3455656666666666666666543   33444444433433    33233345677777777777777776


Q ss_pred             HHHHHHHHH
Q 013318          427 VGILFLTIQ  435 (445)
Q Consensus       427 ~~~~~~~~~  435 (445)
                      +...+..+.
T Consensus       384 ~~~~~~~~~  392 (402)
T PRK11902        384 ALLWLMRGT  392 (402)
T ss_pred             HHHHHHhhh
Confidence            665444444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.86  E-value=3.1e-18  Score=171.10  Aligned_cols=334  Identities=14%  Similarity=0.080  Sum_probs=181.3

Q ss_pred             hccCCCCchHHHHHHHH-----HHHHhhhhHHHHHHHhCcchhhhhh-hHHHHHHHHH-hhhcchhhHHhHHHHhhhhhH
Q 013318           54 VNTEGNLGTISLGILYT-----SFTCFSLVASLVVRVLGSKNALILG-TTGYWLFVAA-NLFPSWYTMVPASLYLGFAAS  126 (445)
Q Consensus        54 i~~~~~~g~~~~~~~~~-----~~ai~~l~~g~l~dr~G~k~~l~~g-~~~~~~~~~~-~~~~~~~~li~~r~l~Gig~g  126 (445)
                      +.++.+.+....+....     .+..+.++.++ .||+|+||.+++. .+...+.... .+.+++..+++.+.+.|...+
T Consensus        42 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  120 (393)
T PRK15011         42 LTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS  120 (393)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            44556766665555432     22334555556 9999999976544 4433343333 256677776555555554445


Q ss_pred             HhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHH
Q 013318          127 IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFL  206 (445)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~  206 (445)
                      ..++....++.++.++        ++++.+.+.++..+..++|.++|++++..+..+           .|||. .|.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-----------~gw~~-~f~~~~  180 (393)
T PRK15011        121 TANPQMFALAREHADK--------TGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-----------FSFTV-MYLSAA  180 (393)
T ss_pred             hhHHHHHHHHHHHhhh--------ccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-----------cChHH-HHHHHH
Confidence            6666666666665421        011224555777888899999999998877543           36864 455555


Q ss_pred             HHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccch-hHHHHHH-HHHHHHHHHHHHhhhccccc
Q 013318          207 GVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVR-MLLIIPL-FAYSGLQQAFVWAEFTKEIV  283 (445)
Q Consensus       207 ~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~l~~~-~~~~g~~~~f~~~~~~~~~~  283 (445)
                      ++.++..++. +++||++++++++  +.+       .+   ..   .++++ .+..... ....+.. ..+..+.|.++.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~---~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~l~  244 (393)
T PRK15011        181 VAFIVCGVMVWLFLPSMRKELPLA--TGT-------LE---AP---RRNRRDTLLLFVICTLMWGTN-SLYIINMPLFII  244 (393)
T ss_pred             HHHHHHHHHHHhhcCccCCCCccc--ccc-------cc---cc---ccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            4444443333 4466543221111  000       00   00   11222 2211111 1111111 111223343332


Q ss_pred             -ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHh
Q 013318          284 -TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  362 (445)
Q Consensus       284 -~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  362 (445)
                       +.+++..+.+.+.....++.+++.++.|+++||+++|+. +..+.+...+.+.  .....++     +...++..++.+
T Consensus       245 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~--~~~~~~~-----~~~~l~~~~l~~  316 (393)
T PRK15011        245 NELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL-MRVAAVAGVCFYA--GMLMAHS-----PAILLGLQLLNA  316 (393)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHH--HHHHHhh-----HHHHHHHHHHHH
Confidence             124455567777777777778899999999999998874 3445444333322  1122222     122333333344


Q ss_pred             hhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHH
Q 013318          363 IGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       363 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      ++.+...+..++...+..|++++.+.+.++....+|..++..+.+.    .++...+.+..++++++.+.++++
T Consensus       317 ~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            4444444455567788899887778888877777777777655543    355666666666666666655544

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.85  E-value=5.8e-18  Score=166.83  Aligned_cols=321  Identities=14%  Similarity=0.090  Sum_probs=205.9

Q ss_pred             hhhHhhhhhhccCCCCchHH-----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHH
Q 013318           45 GAAQNLETTVNTEGNLGTIS-----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPAS  118 (445)
Q Consensus        45 ~~~~~~~~~i~~~~~~g~~~-----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r  118 (445)
                      .+.....|.+..|.+++...     .+.++..+++++++.|++.||+|.|+++.++.+.+++..+.. +.+++..+.+.|
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R  122 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME  122 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667776677766554     456666889999999999999999999999999998877765 677899999999


Q ss_pred             HHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcc
Q 013318          119 LYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGT  198 (445)
Q Consensus       119 ~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~  198 (445)
                      ++.|+++|..+ +...++..|.          |++||+++.|+..++..+|.++|++++..+. .           .+||
T Consensus       123 ~llGvaEA~~~-A~~syI~~Wf----------P~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-----------~gWr  179 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLV----------PPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-----------LGWI  179 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-----------cCch
Confidence            99999999999 8899999998          5789999999999999999999998887733 2           2465


Q ss_pred             h--hHHHHHHHHHHHHHHHHHhccCCccc----Ccc--------c--cc-ccch--hh---h----hHHHHHHHHHHHhh
Q 013318          199 T--LLFIVFLGVITLGTILMCFLRKEEDK----GEK--------E--TA-DASV--NF---Y----SYLVSLSKSITTLL  252 (445)
Q Consensus       199 ~--~~~~i~~~l~~~~~~l~~~l~~~~~~----~~~--------~--~~-~~~~--~~---~----~~~~~~~~~~~~~l  252 (445)
                      .  .+..+-.....+++++.+++|.+++.    +++        |  .. +.+.  ..   +    ...+....+..+..
T Consensus       180 ~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y  259 (511)
T TIGR00806       180 SYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIY  259 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHh
Confidence            3  23333344445666677888865441    110        0  00 0000  00   0    01122334445566


Q ss_pred             ccchhHH--HHHHHHHHHHHH--HHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCcc-chHhHH
Q 013318          253 ADVRMLL--IIPLFAYSGLQQ--AFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSIT-FIVSGG  327 (445)
Q Consensus       253 ~~~~~~~--l~~~~~~~g~~~--~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~-~~i~~g  327 (445)
                      +||+.+.  +.-.+..+|+.+  .|....+- .+ ++.- .+.-|.+-++..+..++.++..|++-.+..+.. ..+.++
T Consensus       260 ~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~-~v-~~~~-~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~  336 (511)
T TIGR00806       260 RNPQLLLWSLWWVFNSAGYYLITYYVHTLWG-TL-DESL-NKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVV  336 (511)
T ss_pred             cCcchhhhhHHHHHHhhHHHHHHHHHHHHHH-Hc-CCCc-cccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence            7777632  333344455433  23222111 11 1111 114566667777777888889998855443211 122222


Q ss_pred             HHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHH
Q 013318          328 AIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCAS  398 (445)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g  398 (445)
                      .++...++  .++.+.++     .++.++.+++++.......+...+-++....+++ +-.||+.++...+=
T Consensus       337 s~~~~gll--~~m~~t~~-----Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~L  401 (511)
T TIGR00806       337 SAIQAGLV--FWMSQSHD-----IWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATAL  401 (511)
T ss_pred             HHHHHHHh--hhhhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHH
Confidence            22333222  23455543     3678899999999888888887777777766554 34688887765433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.3e-19  Score=182.30  Aligned_cols=340  Identities=11%  Similarity=0.057  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h--hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~--~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~  141 (445)
                      .+.++..+.++++++|++.||+|.|+++..+.++.++.++.. .  ..+++.+++.|+++|+++|..+++.+.+.++|+ 
T Consensus        79 ~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~-  157 (466)
T KOG2532|consen   79 FSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWA-  157 (466)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeEC-
Confidence            455555667888999999999999999999999888777654 2  234557788999999999999999999999998 


Q ss_pred             hhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-Hhcc
Q 013318          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLR  220 (445)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~  220 (445)
                               |++||+++.++..++.++|.+++.++++.+....          .||+. .|.++++++++-.+++ ++..
T Consensus       158 ---------P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~----------~GW~s-ifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  158 ---------PPNERSTFIAILTAGSQLGTIITMPVSGLLCESS----------LGWPS-IFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC----------CCCch-HHHHHHHHHHHHHHHHHHHhc
Confidence                     5889999999999999999999998888776441          47865 4556676665555444 3444


Q ss_pred             C-CcccCc---ccccccchhhhhHHHH--HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhH
Q 013318          221 K-EEDKGE---KETADASVNFYSYLVS--LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVG  293 (445)
Q Consensus       221 ~-~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g  293 (445)
                      | |.+++.   +|.+..+.++.....+  ..-..+++++++.++.+....+.-.........+.|.++++ -+++..+.|
T Consensus       218 d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G  297 (466)
T KOG2532|consen  218 DSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG  297 (466)
T ss_pred             CCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh
Confidence            4 433221   1110000000000000  01134567889999888765555444433444556655542 467778999


Q ss_pred             HHHHHHHHHHHHHHhhhhccccCCCCc--------cchHhHHHHHHHHHHHHHHhhccCCCCccchhHH--HHHHHHHhh
Q 013318          294 GAMAVYGAFDAICSLAAGRLTTGLPSI--------TFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYP--LIMAALLGI  363 (445)
Q Consensus       294 ~~~~~~~i~~~~g~~~~G~l~d~~g~~--------~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~G~  363 (445)
                      +..+++.+...+.+++.|.++||+.+|        |..=.++....++++  +.+.+.++.+.. .++.  .+...+.|+
T Consensus       298 ~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l--~~l~~~~~~~~~-~a~~~l~~~~~~~g~  374 (466)
T KOG2532|consen  298 FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFL--LVLAFTSDEHRL-LAVILLTIAIGLSGF  374 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHH--HeeeecCCCcch-HHHHHHHHHHHHccc
Confidence            999999999999999999999987552        111112222222232  234555432210 0111  112233333


Q ss_pred             hhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHHHHHHH
Q 013318          364 GDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI-------SLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       364 ~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~~-------~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      ..+...    .-..+..|++.+..+|+.|+..+++..+++.+.+.+       .....|.+.+++.+++.+.|.+.
T Consensus       375 ~~~Gf~----~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  375 NISGFY----KNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             chhhhH----hhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            332222    122233666666678888998888888877665432       45667888888888888777655

>TIGR00901 2A0125 AmpG-related permease

Probab=99.85  E-value=1.4e-18  Score=171.16  Aligned_cols=323  Identities=11%  Similarity=0.098  Sum_probs=193.0

Q ss_pred             hhhhhhccCCCCchHHHHHHHH---HHHHhhhhHHHHHHHh-----Ccchhh-hhhhHHHHHHHHH-hhh---cchhhHH
Q 013318           49 NLETTVNTEGNLGTISLGILYT---SFTCFSLVASLVVRVL-----GSKNAL-ILGTTGYWLFVAA-NLF---PSWYTMV  115 (445)
Q Consensus        49 ~~~~~i~~~~~~g~~~~~~~~~---~~ai~~l~~g~l~dr~-----G~k~~l-~~g~~~~~~~~~~-~~~---~~~~~li  115 (445)
                      ...|.+.+|.+++....+....   .++ .+++.|+++||+     ||||.+ +.+.+..++.+.. .+.   .+...+.
T Consensus         9 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~   87 (356)
T TIGR00901         9 NTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLA   87 (356)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence            3455666677777766555432   223 388999999998     899975 5555555554333 233   3455566


Q ss_pred             hHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCC
Q 013318          116 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGST  195 (445)
Q Consensus       116 ~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~  195 (445)
                      ..+++.|.+.+...++..++++|+.          |+++|+++.|+...+..+|.++|+.++..+..+.+.+   ....+
T Consensus        88 ~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~---~~~~~  154 (356)
T TIGR00901        88 GLAFLIAFFSATQDIALDAWRLEIL----------SDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFAN---TGLIT  154 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC----------CHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---ccccc
Confidence            6777888888888888899999987          4689999999999999999999998887665443210   00123


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHh-ccCCcccCcccccccchhhhhHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHH
Q 013318          196 SGTTLLFIVFLGVITLGTILMCF-LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVR---MLLIIPLFAYSGLQQ  271 (445)
Q Consensus       196 ~w~~~~~~i~~~l~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~l~~~~~~~g~~~  271 (445)
                      +||. .|.+.+++.++..+..++ .||+++.++++  +   .+..+.++   ...+.+|+|+   .+.+....+......
T Consensus       155 ~wr~-~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~--~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (356)
T TIGR00901       155 LWGY-IFFWTALLILPGLLVTLFLAKEPQEDASVP--K---PLTQAVLK---PIREFFQRKNMIQALLLLLLIVLYKLGD  225 (356)
T ss_pred             ccHH-HHHHHHHHHHHHHHHHHHhccCCCcccccc--h---hHHHHHHH---HHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            5864 455555544444433333 45543211111  0   01111222   2233455554   444333333223222


Q ss_pred             HHHHhhhcccccccccccchhHHHHHHHH-HHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCC---
Q 013318          272 AFVWAEFTKEIVTPALGVSGVGGAMAVYG-AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSG---  347 (445)
Q Consensus       272 ~f~~~~~~~~~~~~~~~~~~~g~~~~~~~-i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~---  347 (445)
                      ....+.++.++.+.+++.++.+.+....+ ++.+++.+++|++.||+|+|+.+ ..+.++..+.... +....++..   
T Consensus       226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l-~~~~~~~~~~~~~-~~~~~~~~~~~~  303 (356)
T TIGR00901       226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL-LLFGIVQALTNAG-FVWLASNGHHDG  303 (356)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHH-HHHHHhcCcccc
Confidence            22223444443334556667787777666 56789999999999999988754 4454444433221 111111100   


Q ss_pred             --ccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHH
Q 013318          348 --VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQC  396 (445)
Q Consensus       348 --~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~  396 (445)
                        .........+.++.+++.+..++...+++.+.+|+++ ++.+|+++..++
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       304 ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence              0002345556677899999999999999999998875 457888776553

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.4e-20  Score=174.17  Aligned_cols=336  Identities=17%  Similarity=0.143  Sum_probs=211.8

Q ss_pred             CCCchHHHHHHHHHHHHhhh----hHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhh
Q 013318           58 GNLGTISLGILYTSFTCFSL----VASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGE  132 (445)
Q Consensus        58 ~~~g~~~~~~~~~~~ai~~l----~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~  132 (445)
                      .+..+...+.++++.|+.|+    +.|.++||+|+|-.+++|..+....++.+ +..+++.++++|.+||+|.+..+++.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            34445667888888877654    68999999999999999999887777776 67888999999999999999999999


Q ss_pred             hhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHH
Q 013318          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLG  212 (445)
Q Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~  212 (445)
                      .+.+++..+         +++|||+++|+...+.++|-.+||.+++.+.+..+            ....|++.++++++-
T Consensus       181 lamlAd~f~---------~d~er~~vmGialgfislG~lvgPpfGGilYe~~G------------k~aPFlVL~~v~Lld  239 (464)
T KOG3764|consen  181 LAMLADVFP---------EDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG------------KSAPFLVLAIVLLLD  239 (464)
T ss_pred             HHHHHHHcc---------cchhhhHHHHHHHHHHhccceecCCcccchHhhcC------------CcCcHHHHHHHHHHH
Confidence            999999986         46789999999999999999999999998865432            234577777777666


Q ss_pred             HHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccccccc-cc-
Q 013318          213 TILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VS-  290 (445)
Q Consensus       213 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~-~~-  290 (445)
                      ..+-+++-||.+.++++ .  ++  .       +..++++++|..+.........+.+.+|.-+.++.... +.+. .. 
T Consensus       240 ~~L~l~vi~p~~~~~~~-~--~~--~-------~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~-e~m~~p~w  306 (464)
T KOG3764|consen  240 GALQLLVIEPTEMDPDS-T--EQ--G-------TPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWML-ETMFTPGW  306 (464)
T ss_pred             HHHHHheeCccccCccc-c--cc--C-------ccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHH-HhccCCCc
Confidence            65555655543322211 0  00  1       12456788999887766666677766666444443221 2222 23 


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHH----HHHHHhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI----MAALLGIGDG  366 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~G~~~~  366 (445)
                      ++|......++...++..++|.+.||++..+.+...+..+ .++......-+.++     +.-+++    ..+.-+..|+
T Consensus       307 ~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~-~~G~~~~~iP~~~~-----~~~L~vp~~~l~~~i~~~da  380 (464)
T KOG3764|consen  307 EVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLA-TVGVSSGPIPFATS-----IAQLWVPNFGLGFGIGLADA  380 (464)
T ss_pred             ceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHH-HHHHHhchhHhhhh-----HHHHhhhhHHHHHHHHHHHH
Confidence            5777778888999999999999999998433222222111 11211111111111     112222    2222334455


Q ss_pred             hhhhhhhHHHHhhccC---CchhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          367 VLNTQLSALLGILFKH---DTEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGILFLT  433 (445)
Q Consensus       367 ~~~~~~~~~l~~~~~~---~~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~  433 (445)
                      ...|+..-++-....+   -.+..+++.....++|.++|+.+++.    .+++|...+.+...++-.......+
T Consensus       381 sl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  381 SLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             HHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444333222111   01223344444444555555544433    4678877777766665555444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.84  E-value=2.2e-17  Score=168.73  Aligned_cols=396  Identities=9%  Similarity=-0.016  Sum_probs=225.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhHhhhhhh-ccC--CCCchHHHHH----HHHHHHHhhhhHHHHHHH-hCcchhhhhh
Q 013318           24 KNYTRDVHILSCAFLLIFLAYGAAQNLETTV-NTE--GNLGTISLGI----LYTSFTCFSLVASLVVRV-LGSKNALILG   95 (445)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~--~~~g~~~~~~----~~~~~ai~~l~~g~l~dr-~G~k~~l~~g   95 (445)
                      .+.++.++.+.+..++.-.+|+......+.. .++  .+++....+.    ......+++++.|++.|| +|||+++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            3556667777677777766766665555544 333  4555544333    334556678899999999 8999999999


Q ss_pred             hHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhh
Q 013318           96 TTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (445)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~  174 (445)
                      ..++++..+.. ..++...+++.|++.|+|.|...+...++++++.++.       ++++|++++++++...++|..+|+
T Consensus        86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~-------~~~~r~~~~~~~~~~~niG~~ig~  158 (475)
T TIGR00924        86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERG-------DMPRRDGGFTLFYMSINIGSFISP  158 (475)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCC-------CcccccceehhHHHHHHHHHHHHH
Confidence            98887765543 5567777878999999999999999899999987521       114688999999999999999999


Q ss_pred             HHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc-cCccc--ccccchhhhhHH----------
Q 013318          175 LITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED-KGEKE--TADASVNFYSYL----------  241 (445)
Q Consensus       175 li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~-~~~~~--~~~~~~~~~~~~----------  241 (445)
                      +++..+..+           .+|+. .|.+.++..+++.+..++.+++.+ .++++  .++++.......          
T Consensus       159 ~l~g~l~~~-----------~g~~~-~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (475)
T TIGR00924       159 LLAGVIAEN-----------YGYHV-GFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALV  226 (475)
T ss_pred             HHHHHHHHh-----------cChHH-HHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHH
Confidence            998877532           25653 344444444444444334332211 11000  000000000000          


Q ss_pred             -----------HHH--------------HHHHHH----hhccchhHHHHHHHHHHHH-HHHHH--Hhhhcccc---cccc
Q 013318          242 -----------VSL--------------SKSITT----LLADVRMLLIIPLFAYSGL-QQAFV--WAEFTKEI---VTPA  286 (445)
Q Consensus       242 -----------~~~--------------~~~~~~----~l~~~~~~~l~~~~~~~g~-~~~f~--~~~~~~~~---~~~~  286 (445)
                                 ...              .+...+    ....+|.....+++...-. ...+.  .+.++.+.   .+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~  306 (475)
T TIGR00924       227 FFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHE  306 (475)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence                       000              000000    0001122112221111111 01111  11122111   1111


Q ss_pred             cc-c-chhHHHHHHHHHHHHHHHhhhh----ccccCCCCccch--HhHHHHHHHHHHHHHHh--hccCCCCccchhHHHH
Q 013318          287 LG-V-SGVGGAMAVYGAFDAICSLAAG----RLTTGLPSITFI--VSGGAIAQVVVFLWILI--NYSVTSGVLGTLYPLI  356 (445)
Q Consensus       287 ~~-~-~~~g~~~~~~~i~~~~g~~~~G----~l~d~~g~~~~~--i~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  356 (445)
                      .. . ...+.+.+..++..++.+++..    ++.||.......  +.+|.++..++++...+  .+.++.....+.....
T Consensus       307 ~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~  386 (475)
T TIGR00924       307 MLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVL  386 (475)
T ss_pred             ccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHH
Confidence            11 1 1366777888888888887754    455542111112  24677766666532211  1111110111345667


Q ss_pred             HHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHH
Q 013318          357 MAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       357 ~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      ..+++++|+....|..++++.+..|++ ++.+.|++.+...+|..++..+.+..    +....+..+.+.+++..+..+.
T Consensus       387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       387 IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999987 55578998888888887775554321    3344455555555555555656


Q ss_pred             HHHHHHh
Q 013318          432 LTIQVEK  438 (445)
Q Consensus       432 ~~~~~~~  438 (445)
                      +.++.+|
T Consensus       467 ~~~~~~k  473 (475)
T TIGR00924       467 MVPWLNR  473 (475)
T ss_pred             HHHHHHh
Confidence            6666554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.84  E-value=3.1e-18  Score=163.41  Aligned_cols=351  Identities=13%  Similarity=0.116  Sum_probs=222.5

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~  101 (445)
                      ++..++.+...|++.-......-.+.|++.+..++++..    ...+|..|.++.+++|++.+|+|+|+.+++|..++.+
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av   90 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV   90 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444443333333333233335677776667777654    4556778899999999999999999999999998887


Q ss_pred             HHHHhh----hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHH
Q 013318          102 FVAANL----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (445)
Q Consensus       102 ~~~~~~----~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~  177 (445)
                      ..+.+.    ..++..++.+-++.|.|.+.+-++.+.|++...+          |++..+-+.+.+.++.+|..+||+++
T Consensus        91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~----------~~~a~~rlnl~q~fn~lGa~~gp~~g  160 (422)
T COG0738          91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGK----------PESAAFRLNLAQAFNGLGAILGPLLG  160 (422)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC----------chhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            766652    4578888888899999999999999999999973          44566778999999999999999987


Q ss_pred             HHhhcCccc---cccc---cC--CCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHH
Q 013318          178 LAVLKDDKV---CAAL---LG--GSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT  249 (445)
Q Consensus       178 ~~l~~~~~~---~~~~---~~--~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (445)
                      ..+.-....   ..++   ..  ...++ +..|...+.+..+..+.....|.|+.++.++ ++.+  .+..      ...
T Consensus       161 ~~lils~~~~~~~~~~~~~~~~~~~~~v-~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~-~~~~--~~~~------~~~  230 (422)
T COG0738         161 SSLILSGVALTMSAAQILAIKGADASSV-QFPYLILAGLLVLLAVLILLSKLPDLQVAAP-SLGA--SGSA------GLS  230 (422)
T ss_pred             HHHHHhhhhhccCHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhccCCcCCcccc-cccc--cccc------hHH
Confidence            655431000   0000   00  00112 2445555444433333334455454322221 1100  0000      123


Q ss_pred             HhhccchhHHH-HHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHH
Q 013318          250 TLLADVRMLLI-IPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGG  327 (445)
Q Consensus       250 ~~l~~~~~~~l-~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g  327 (445)
                      +++++|+++.- +-.|+|.|.+.+.+ ++++.+..+ .+++..+.+...+.++.+.++|++++-++.+|+..+|.+. ..
T Consensus       231 ~l~~~~~~~~gvl~~FlYVG~Eva~g-sfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~La-f~  308 (422)
T COG0738         231 SLFQNKHLRLGVLAIFLYVGAEVAIG-SFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLA-FY  308 (422)
T ss_pred             HHHhChHHHHHHHHHHHHHhHHHHHH-HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-HH
Confidence            56778887654 44577899987655 444444433 4555567788889999999999999999988998777443 33


Q ss_pred             HHHHH-HHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhh
Q 013318          328 AIAQV-VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       328 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      +++.. .++.   ..+.++      .+.+...++.|+..+...|+++++..+..|++.+.+ |..-....+|.++.+.+.
T Consensus       309 a~~~ill~~~---~~l~~g------~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~-s~~l~maivGGAiiP~l~  378 (422)
T COG0738         309 ALIAILLLLA---VALIGG------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVG-SGLLVMAIVGGAIIPPLQ  378 (422)
T ss_pred             HHHHHHHHHH---HHHhcC------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccccc-ceeeeeheecchHHHHHH
Confidence            33322 2221   123322      244555667789999999999999988888654433 222233345666655554


Q ss_pred             cc
Q 013318          407 PY  408 (445)
Q Consensus       407 ~~  408 (445)
                      ++
T Consensus       379 G~  380 (422)
T COG0738         379 GV  380 (422)
T ss_pred             HH
Confidence            44

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.83  E-value=1.4e-17  Score=170.41  Aligned_cols=324  Identities=14%  Similarity=0.087  Sum_probs=206.4

Q ss_pred             HHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH--h--h--hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhh
Q 013318           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N--L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (445)
Q Consensus        70 ~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~--~--~--~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~  143 (445)
                      ....+.++++|.++||++|||+++.+-.+..+..+.  .  .  ..+.+.+++..++.|++.+...|+..+++.+..   
T Consensus        56 LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV---  132 (524)
T PF05977_consen   56 LPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELV---  132 (524)
T ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            344567889999999999999999988755432221  1  1  246777888899999999999999999999997   


Q ss_pred             hhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc
Q 013318          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  223 (445)
Q Consensus       144 ~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~  223 (445)
                             |+++..++.++.....+++..+||.+++.+....+.            ...|.+-++..++.......++++.
T Consensus       133 -------~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~------------~~~f~inalsfl~~i~~l~~~~~~~  193 (524)
T PF05977_consen  133 -------PKEDLPAANALNSISFNIARIIGPALGGILVAFFGA------------AAAFLINALSFLISILALLRWKPPP  193 (524)
T ss_pred             -------cHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHccccc
Confidence                   467889999999999999999999998876543321            2234444433333332223344322


Q ss_pred             ccCcccccccchhhhhHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHH
Q 013318          224 DKGEKETADASVNFYSYLVSLSKSITTLLA-DVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGA  301 (445)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i  301 (445)
                      + +++.  +     +++..+.+++-.+..+ +|.+...+...+..++........+|....+ -+.+....|++++.+++
T Consensus       194 ~-~~~~--~-----~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gv  265 (524)
T PF05977_consen  194 P-PSSL--P-----RERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGV  265 (524)
T ss_pred             c-cccc--c-----hhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHH
Confidence            1 1111  0     1122233334444333 4544433332333333322222333322211 23445578999999999


Q ss_pred             HHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhcc
Q 013318          302 FDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK  381 (445)
Q Consensus       302 ~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~  381 (445)
                      |.++|+++.+++.+|+++++ ++..+.++.+++++  .+.+.++     ....++..++.|++....++..++.+.+..|
T Consensus       266 Gai~Gal~~~~l~~~~~~~~-lv~~~~~~~a~~~~--~lal~~~-----~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P  337 (524)
T PF05977_consen  266 GAILGALLLPRLRRRLSSRR-LVLLASLLFALALL--LLALSPS-----FWLALIALFLAGAAWIIANSSLNTLVQLSVP  337 (524)
T ss_pred             HHHHHHHHHHHhhcccCcch-hhHHHHHHHHHHHH--HHhcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999988766 44556555554432  2344433     2455667778899888888888899999999


Q ss_pred             CC-chhhHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHHHHHHHH
Q 013318          382 HD-TEGAFAQLKVWQCASIAVVFFIG----PYISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       382 ~~-~~~a~~~~~~~~~~g~~ig~~i~----~~~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      ++ +++++|+++.....+..+|.++.    ...+....+.+.++.++++.+...+
T Consensus       338 ~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  338 DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            87 56688888877766666655444    3445666666655555555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.82  E-value=5.7e-18  Score=168.96  Aligned_cols=314  Identities=16%  Similarity=0.072  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH----hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~----~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      .+++....++|+++++++.||+|||..+.++.+...+....    ...+++..++.+|++.|+..|.....+.-|+.|.+
T Consensus        66 vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~s  145 (485)
T KOG0569|consen   66 VSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEIS  145 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence            55566667788899999999999999999988765543332    24689999999999999999999999999999998


Q ss_pred             hhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                                |++.||..-.....+..+|..+|..++.--....         ...|. .++....+.+++..++..++|
T Consensus       146 ----------P~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt---------~~~W~-~l~~~~~i~~~~~l~~l~~~P  205 (485)
T KOG0569|consen  146 ----------PKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT---------EDLWP-YLLAFPLIPALLQLALLPFLP  205 (485)
T ss_pred             ----------hhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC---------CcchH-HHHHHHHHHHHHHHHHHhcCC
Confidence                      4678999888877777777777766654222111         12464 233333444445555567888


Q ss_pred             CCccc----Ccc-cccc---------c--chh-hh--hHHHH------HHHHHHHhhccchhHHHHHHHH----HHHHHH
Q 013318          221 KEEDK----GEK-ETAD---------A--SVN-FY--SYLVS------LSKSITTLLADVRMLLIIPLFA----YSGLQQ  271 (445)
Q Consensus       221 ~~~~~----~~~-~~~~---------~--~~~-~~--~~~~~------~~~~~~~~l~~~~~~~l~~~~~----~~g~~~  271 (445)
                      |+++-    +.+ ++.+         +  +.. +.  ...++      .....++.++++..+.-....+    .+.++.
T Consensus       206 ESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sG  285 (485)
T KOG0569|consen  206 ESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSG  285 (485)
T ss_pred             CCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcC
Confidence            86541    111 1000         0  000 00  00000      1113456777766644322111    111111


Q ss_pred             HHHHhhhcccc-cccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH--HhhccCCC-C
Q 013318          272 AFVWAEFTKEI-VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI--LINYSVTS-G  347 (445)
Q Consensus       272 ~f~~~~~~~~~-~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~--~~~~~~~~-~  347 (445)
                      ......|...+ .+.++...+.-+.....++.+.+.+++..++.||.|||.. ++.+..+..++.+..  .+...... .
T Consensus       286 i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL-ll~~~~~~~~~~~~~~~~~~l~~~~~~  364 (485)
T KOG0569|consen  286 INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL-LLISLSLMAVALLLMSIALFLSNSFGS  364 (485)
T ss_pred             cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            11111222222 3345666667788889999999999999999999999874 455555444432211  11111111 1


Q ss_pred             ccchhHHHHHHHHHhhhhhh-hhhhhhHHHHhhccCCchh-hHHHHHHHHHHHHH
Q 013318          348 VLGTLYPLIMAALLGIGDGV-LNTQLSALLGILFKHDTEG-AFAQLKVWQCASIA  400 (445)
Q Consensus       348 ~~~~~~~~~~~~l~G~~~~~-~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~  400 (445)
                      +. ......+.+++.+..+. ..|..+-+.+|++|++.|+ +.++-...+.++..
T Consensus       365 ~~-~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~f  418 (485)
T KOG0569|consen  365 WL-SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNF  418 (485)
T ss_pred             HH-HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHH
Confidence            00 01122334444444443 3467778899999877554 66666666655554

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=99.82  E-value=1.6e-19  Score=153.91  Aligned_cols=142  Identities=37%  Similarity=0.712  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHhhhHhhhhhh----cc------CCCCchHHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           33 LSCAFLLIFLAYGAAQNLETTV----NT------EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~i----~~------~~~~g~~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      |+++|+++|.+|++.+++++++    ++      +++.|+.++++.|..++++++++|.+.+++|+|+.+++|.+++.+|
T Consensus         1 Lg~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y   80 (156)
T PF05978_consen    1 LGIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY   80 (156)
T ss_pred             CchHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4789999999999998877765    22      3678999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhc
Q 013318          103 VAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (445)
Q Consensus       103 ~~~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~  182 (445)
                      .+++++|+.+.++++.++.|+|++.+|++++.|+++++          ++++|++..|++|+..+.+.++|+++...+.+
T Consensus        81 ~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s----------~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen   81 IASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS----------TEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC----------CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999997          46789999999999999999999999887765


Q ss_pred             Cc
Q 013318          183 DD  184 (445)
Q Consensus       183 ~~  184 (445)
                      ..
T Consensus       151 ~~  152 (156)
T PF05978_consen  151 GQ  152 (156)
T ss_pred             CC
Confidence            43

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1.1e-17  Score=170.51  Aligned_cols=372  Identities=14%  Similarity=0.107  Sum_probs=236.5

Q ss_pred             hHHHHHHHHHHHHHHh---hhHhhhhhhccCCCCc----hHHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           30 VHILSCAFLLIFLAYG---AAQNLETTVNTEGNLG----TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        30 ~~~l~~~~~~~~~~~~---~~~~~~~~i~~~~~~g----~~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      |+++..+|++....+.   +...+.+.+.++.+-+    .+..++..+...++.++.+.+.||+|.|++.+.|.++.++.
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            3444455555554443   2223445554443332    23355666667778899999999999999999999988876


Q ss_pred             HHH-hhhcchhh-HHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          103 VAA-NLFPSWYT-MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       103 ~~~-~~~~~~~~-li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      .+. .+.++++. ++...++.|+|.|..+..+-..+..++           ++||+.+.|+..+...+|.++=|.+.-.+
T Consensus       125 ~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-----------~kkR~lA~Gia~~GsG~G~~~~~~l~~~l  193 (509)
T KOG2504|consen  125 LLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-----------EKKRALATGIAVSGTGVGTVVFPPLLKYL  193 (509)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-----------HHHHHHHHhhhhccCCcceeeHHHHHHHH
Confidence            664 46676654 456799999999999999999998886           67999999998887777776655555544


Q ss_pred             hcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc--Cc-------------------------cccccc
Q 013318          181 LKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK--GE-------------------------KETADA  233 (445)
Q Consensus       181 ~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~--~~-------------------------~~~~~~  233 (445)
                      ...           .|||.. ..++..+.+-.++.....++....  ++                         ++....
T Consensus       194 ~~~-----------~G~r~~-~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (509)
T KOG2504|consen  194 LSK-----------YGWRGA-LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLK  261 (509)
T ss_pred             HHH-----------hCcHHH-HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCC
Confidence            432           467653 334555554333333444431000  00                         000000


Q ss_pred             c------------hhhhh--HHHHHHH-HHHHhhccchhHHHHHH--HHHHHHHHHHHHhhhcccccccccccchhHHHH
Q 013318          234 S------------VNFYS--YLVSLSK-SITTLLADVRMLLIIPL--FAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAM  296 (445)
Q Consensus       234 ~------------~~~~~--~~~~~~~-~~~~~l~~~~~~~l~~~--~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~  296 (445)
                      +            .++..  +.+.... --++++|||.++.+...  +.+.|+...+.  .++.+..+.+++.+..++.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~--~l~~~~~~~g~~~~~aa~l~  339 (509)
T KOG2504|consen  262 KLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFV--YLPSYAKSLGLSSNDAAFLL  339 (509)
T ss_pred             cccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCCChhhhHHHH
Confidence            0            00000  0011010 01467888887765442  33334333221  22322234566667888999


Q ss_pred             HHHHHHHHHHHhhhhccccCCCCccch-HhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHH
Q 013318          297 AVYGAFDAICSLAAGRLTTGLPSITFI-VSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL  375 (445)
Q Consensus       297 ~~~~i~~~~g~~~~G~l~d~~g~~~~~-i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  375 (445)
                      +..++...+++++.|++.|+...++.. ..++.+...++..  ......  +   +..+.....++|++.+.+....+-+
T Consensus       340 Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~--~~p~~~--~---~~~l~~~~~~fG~~~g~~~~l~~~i  412 (509)
T KOG2504|consen  340 SIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL--FLPFAT--T---YVGLIVFSILFGFCVGSFSSLTPVI  412 (509)
T ss_pred             HHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH--HHHHhc--c---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998743323 2333333333321  112221  2   3567788889999999998888888


Q ss_pred             HHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          376 LGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPY-----ISLQAMLIVMVVGICVALVGILFLT  433 (445)
Q Consensus       376 l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~  433 (445)
                      +.++.+.++ ..++|+..++++++..+|+-+.+.     .+|...++...++.+++...++...
T Consensus       413 ~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  413 LVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999998665 458999999999999887766643     3588888888888888887776655

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.1e-16  Score=150.54  Aligned_cols=341  Identities=13%  Similarity=0.078  Sum_probs=224.7

Q ss_pred             hhhhhhccCCCCchHHHHHH----HHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhhhcchhhHHhHHHHhhhh
Q 013318           49 NLETTVNTEGNLGTISLGIL----YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFA  124 (445)
Q Consensus        49 ~~~~~i~~~~~~g~~~~~~~----~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~~~~~~~li~~r~l~Gig  124 (445)
                      ++.+++.++.+++....+.+    ..++++.+++++++.+|+|.++.+..++++.++....-...+...++..-++.|.|
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~g  112 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAGAG  112 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence            55666777788887765554    34788999999999999999999999998887777765445777777889999999


Q ss_pred             hHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHH
Q 013318          125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIV  204 (445)
Q Consensus       125 ~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i  204 (445)
                      .+...+--...+-+.+           |++-+..+|+|....+.|..+++.+...+.++.          .+||..+.. 
T Consensus       113 Iav~nVLLPslIK~~F-----------pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~----------~gW~~aL~~-  170 (395)
T COG2807         113 IAVINVLLPSLIKRDF-----------PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS----------GGWRGALGF-  170 (395)
T ss_pred             HHHHHHhhhHHHHhhc-----------ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----------ccHHHHHHH-
Confidence            9987777777776664           678999999999999999999988877776554          257743222 


Q ss_pred             HHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 013318          205 FLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT  284 (445)
Q Consensus       205 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~  284 (445)
                      -+..++++.+  .++|+..+++..+.+.   ..        ++..+++|+|.-|.+...+=++........+|+|+.+.+
T Consensus       171 WAl~allAl~--~WlPq~~r~~~~~~~~---~~--------~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~  237 (395)
T COG2807         171 WALLALLALL--IWLPQALREQAASIAT---KL--------VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID  237 (395)
T ss_pred             HHHHHHHHHH--HHhhhccccccccccc---cc--------ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            2233333333  4566532211111000   00        011246888888877543222322223335899999999


Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      ++++..+.|.+.+...+.++..++....+.+|...++.+......++.++++-  +.+.|...    ...+  .+++|+|
T Consensus       238 ~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G--~~~~P~~~----~~lw--~~llG~G  309 (395)
T COG2807         238 RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG--LLLAPGQL----PILW--ALLLGLG  309 (395)
T ss_pred             cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH--HHHhhhhH----HHHH--HHHHhCc
Confidence            99998899999999999999999999999987655554544444555555431  22443321    2223  5889999


Q ss_pred             hhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHH---HHHHHHhh-----cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          365 DGVLNTQLSALLGILFKHDTEGAFAQLKVWQCAS---IAVVFFIG-----PYISLQAMLIVMVVGICVALVGILFLT  433 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g---~~ig~~i~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~  433 (445)
                      .+...+...+++.+..++.++.+ ..-.+.|++|   ++.|+.+.     ...++....+.++...+...+.-++..
T Consensus       310 ~G~~F~laL~li~~rs~~a~~Aa-~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         310 QGGAFPLALTLILLRSSDAAIAA-ALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             cchHHHHHHHHHHhhcCChHHHH-HHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999988888888876544432 3444444444   34444333     334566666666555555555444443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.79  E-value=1.2e-15  Score=156.99  Aligned_cols=390  Identities=11%  Similarity=0.114  Sum_probs=211.2

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhh-hhhhccCCCCchHHHHHHHHH----HHHhhhhHHHHHHH-hCcchhhhhhhHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNL-ETTVNTEGNLGTISLGILYTS----FTCFSLVASLVVRV-LGSKNALILGTTGY   99 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~~~~~g~~~~~~~~~~----~ai~~l~~g~l~dr-~G~k~~l~~g~~~~   99 (445)
                      .++.++.+.+..++.-.+++..... ...+.++.+++.......+..    .....++.|++.|| +|||+++.++.+++
T Consensus        19 ~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~   98 (500)
T PRK09584         19 QPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL   98 (500)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            3456666666666666666555543 334445556655433333222    22344679999999 59999999999887


Q ss_pred             HHHHHHh-hh-cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHH
Q 013318          100 WLFVAAN-LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (445)
Q Consensus       100 ~~~~~~~-~~-~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~  177 (445)
                      .+..... .. ++...+++.|+++|+|.|...+...++++++.++        ++++|++++++++.+.++|..+||+++
T Consensus        99 ~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~--------~~~~~~~~~~~~~~~~~iG~~~gp~i~  170 (500)
T PRK09584         99 AIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK--------DDPRLDGAFTMYYMSINIGSFFSMLAT  170 (500)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC--------CchhhhhcchHHHHHHHHHHHHHHHHH
Confidence            7654443 33 3455666789999999999888888899998752        234566788988899999999999998


Q ss_pred             HHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHH----hccCCcccCccc-ccccchh----------------
Q 013318          178 LAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMC----FLRKEEDKGEKE-TADASVN----------------  236 (445)
Q Consensus       178 ~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~----~l~~~~~~~~~~-~~~~~~~----------------  236 (445)
                      ..+..+           .|||. .|.+..+...++.+..+    .+++..++++++ .+.....                
T Consensus       171 g~l~~~-----------~g~~~-~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (500)
T PRK09584        171 PWLAAK-----------YGWSV-AFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWL  238 (500)
T ss_pred             HHHHHh-----------hCHHH-HHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence            877533           35764 34444443344433222    233221111100 0000000                


Q ss_pred             -hhhHHHH------------H-HHHHHH--hhccchhHHHHHHHHHHHHHHHHH--Hhhhccccc-------ccc-cccc
Q 013318          237 -FYSYLVS------------L-SKSITT--LLADVRMLLIIPLFAYSGLQQAFV--WAEFTKEIV-------TPA-LGVS  290 (445)
Q Consensus       237 -~~~~~~~------------~-~~~~~~--~l~~~~~~~l~~~~~~~g~~~~f~--~~~~~~~~~-------~~~-~~~~  290 (445)
                       ...+...            . .+...+  -..++|.+...+.+. ...  .|+  ....+..+.       ++. .+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i--~f~~~~~q~~~~l~~~~~~~~~~~~~g~~  315 (500)
T PRK09584        239 LHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFILML-EAI--IFFVLYSQMPTSLNFFAIRNVEHSILGIA  315 (500)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-HHH--HHHHHHHHhccHHHHHHHHhccccccceE
Confidence             0000000            0 000000  011223332222221 111  111  011111110       111 1211


Q ss_pred             -hhHHHHHHHHHHHHHHHhhh----hccccCCCCccchHhHHHHHHHHHHHHHHh--hccCCCCccchhHHHHHHHHHhh
Q 013318          291 -GVGGAMAVYGAFDAICSLAA----GRLTTGLPSITFIVSGGAIAQVVVFLWILI--NYSVTSGVLGTLYPLIMAALLGI  363 (445)
Q Consensus       291 -~~g~~~~~~~i~~~~g~~~~----G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~G~  363 (445)
                       ..+.+.+...+..++..++.    +++.||.+..+ .+.+|.++.+++++.+..  ...++.............+++|+
T Consensus       316 i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~-~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~  394 (500)
T PRK09584        316 VEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPH-KFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSI  394 (500)
T ss_pred             ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence             24455566676666666555    66666665444 346777777766543211  11111111112346667889999


Q ss_pred             hhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhh-----cc------h---hHHHHHHHHHHHHHHHHHH
Q 013318          364 GDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIG-----PY------I---SLQAMLIVMVVGICVALVG  428 (445)
Q Consensus       364 ~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~-----~~------~---~~~~~~~i~~~~~~~~~~~  428 (445)
                      |+....|...+++.+..|++.+ ..+|.+.+...+|..++-.+.     +.      .   .+.+.+..+++.+++..+.
T Consensus       395 ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        395 GELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998754 578877776666665543232     11      1   2456666666655545544


Q ss_pred             HHHHHHHHHhh
Q 013318          429 ILFLTIQVEKA  439 (445)
Q Consensus       429 ~~~~~~~~~~~  439 (445)
                      .+.+.++.+|.
T Consensus       475 ~~~~~~~~~k~  485 (500)
T PRK09584        475 MLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHH
Confidence            44555544443

>PTZ00207 hypothetical protein; Provisional

Probab=99.79  E-value=1e-16  Score=164.84  Aligned_cols=119  Identities=13%  Similarity=0.062  Sum_probs=90.8

Q ss_pred             hHhhhhhhccCCCCchHHHHHHH---HHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hh------cchhhHHh
Q 013318           47 AQNLETTVNTEGNLGTISLGILY---TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF------PSWYTMVP  116 (445)
Q Consensus        47 ~~~~~~~i~~~~~~g~~~~~~~~---~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~------~~~~~li~  116 (445)
                      ...+.+.+.++.+++....+.+.   ..++.+++++|++.||+|+|++++++.+++.+..+.. ..      ++++.+++
T Consensus        46 fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         46 FNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            34556666666666554433322   2345567789999999999999999999887765543 32      58889999


Q ss_pred             HHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHH
Q 013318          117 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (445)
Q Consensus       117 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li  176 (445)
                      .|++.|+|.+..+++....+.+|+           |++||++.|+...+.++|.++.+.+
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~F-----------p~~RG~a~Gi~~~~~gLGsaI~~~l  174 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVF-----------PSNRGAVVAIMKTFTGLGSAILGSI  174 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-----------hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888888886           4789999999999999999764433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.78  E-value=9.4e-17  Score=162.44  Aligned_cols=324  Identities=13%  Similarity=0.060  Sum_probs=185.0

Q ss_pred             hhccCCCCchHHHHHHHH----HHHHhhhhHHHHHHH----hCcch-hhhhhhHHHHHHHHHh-hhcc------hhhHHh
Q 013318           53 TVNTEGNLGTISLGILYT----SFTCFSLVASLVVRV----LGSKN-ALILGTTGYWLFVAAN-LFPS------WYTMVP  116 (445)
Q Consensus        53 ~i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr----~G~k~-~l~~g~~~~~~~~~~~-~~~~------~~~li~  116 (445)
                      .+.++.+++....+.+..    ..++.+++.|+++||    +|||| .++++.....+..+.. ..|+      ...++.
T Consensus        25 ~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  104 (437)
T TIGR00792        25 FYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYI  104 (437)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            344456666655555444    457788999999998    67755 5666766666544433 3332      234456


Q ss_pred             HHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCC
Q 013318          117 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTS  196 (445)
Q Consensus       117 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~  196 (445)
                      .+++.+++.+...+...++..+..+         +++||++..++...+..+|..+++.+...+...... +   ....+
T Consensus       105 ~~~~~~~~~~~~~~~~~al~~~~~~---------~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~-~---~~~~g  171 (437)
T TIGR00792       105 TYILLGLFYSFVNIPYWSLVPAITL---------DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG-G---DDKFG  171 (437)
T ss_pred             HHHHHHHHHHhhcccHhhCcccccC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C---ccccc
Confidence            6788888887766666666666652         467899999988877777776666554333221110 0   01246


Q ss_pred             cchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 013318          197 GTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW  275 (445)
Q Consensus       197 w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~  275 (445)
                      |+. .+.+.+++.++..++. +++||++++++++ ++    ++.+.++   ..++.+|+|+++......+......... 
T Consensus       172 ~~~-~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~-~~----~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~-  241 (437)
T TIGR00792       172 WFM-FALVLALIGVVSLIICFFGTKERYSEIPKN-IE----KKLSLKQ---IFKALFKNDQLLILCLAYLFYNLAFNIK-  241 (437)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHcCCEecCCCCCcc-cc----cCCCHHH---HHHHHhCCHHHHHHHHHHHHHHHHHHHH-
Confidence            753 3444444444433332 3455543211111 00    0112222   2334678888876554444333322111 


Q ss_pred             hhhcccccccccc-cchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHH
Q 013318          276 AEFTKEIVTPALG-VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYP  354 (445)
Q Consensus       276 ~~~~~~~~~~~~~-~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (445)
                      ..+..++.+..++ ....+.......++.+++.++.+++.||+|+|+. +..+.++..++.+.  ..+.+++    ....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~--~~~~~~~----~~~~  314 (437)
T TIGR00792       242 NGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL-FAGGILLMVLGYLI--FFFAGSN----LPLI  314 (437)
T ss_pred             cchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHH--HHHcchh----HHHH
Confidence            1112222222223 2345566667789999999999999999998874 45666655554432  2222221    1334


Q ss_pred             HHHHHHHhhhhhhhhhhhhHHHHhhcc-------CC-chhhHHHHHHHHHHHHHHHHHhh
Q 013318          355 LIMAALLGIGDGVLNTQLSALLGILFK-------HD-TEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       355 ~~~~~l~G~~~~~~~~~~~~~l~~~~~-------~~-~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      .+..++.|++.+..++..+++++|..|       ++ ++.++|++++.+.+|..++..+.
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       315 LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667888888888888899888765       22 23467888888888776664443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.76  E-value=5.3e-15  Score=147.57  Aligned_cols=343  Identities=11%  Similarity=-0.002  Sum_probs=182.2

Q ss_pred             hHhhhhhhccCCCCchHHHHHHH--HHHHHhhhhHHH-----HHHHhCcchhhhhhhHHH-H--HHHHHhh--hcc-hhh
Q 013318           47 AQNLETTVNTEGNLGTISLGILY--TSFTCFSLVASL-----VVRVLGSKNALILGTTGY-W--LFVAANL--FPS-WYT  113 (445)
Q Consensus        47 ~~~~~~~i~~~~~~g~~~~~~~~--~~~ai~~l~~g~-----l~dr~G~k~~l~~g~~~~-~--~~~~~~~--~~~-~~~  113 (445)
                      .....|...++.+.+....+.+.  ....+..++.++     ..||+||||.++++..+. .  +......  ..+ ...
T Consensus        20 ~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (390)
T TIGR02718        20 AMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGW   99 (390)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHH
Confidence            33556666677778877766653  222344444444     456689999976665332 2  1122212  112 112


Q ss_pred             HHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCC
Q 013318          114 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGG  193 (445)
Q Consensus       114 li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~  193 (445)
                      ++..-.+.++..+...+....+..+..          ++++++...+.......+|.++|+.....+..+          
T Consensus       100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~----------~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~----------  159 (390)
T TIGR02718       100 AVGLLACASLASATQDIATDGMAAEHF----------NGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK----------  159 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            222333344444444444443433332          345566666666666677777777665555432          


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 013318          194 STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAF  273 (445)
Q Consensus       194 ~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f  273 (445)
                       .+||. .|.+.+++.++..+..+++++++++++++  +     +.    ..++..+.+|+|+++......+........
T Consensus       160 -~gw~~-~f~~~a~l~~~~~~~~~~~~~~~~~~~~~--~-----~~----~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~  226 (390)
T TIGR02718       160 -FGQRP-AFLLVACVPLASLVCVLWLKDRAVASPEA--P-----LA----RRASLFRFFRRPLAWSLLALALLSAMTAVS  226 (390)
T ss_pred             -hCHHH-HHHHHHHHHHHHHHHHHHcCCCCcCcccc--c-----hh----hHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence             35764 55555555555444445555432211110  0     00    112345678888876555443333332222


Q ss_pred             HHhhhcccccccccccchhHHHHHHHHH-HHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHh-hc-cCCCCccc
Q 013318          274 VWAEFTKEIVTPALGVSGVGGAMAVYGA-FDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NY-SVTSGVLG  350 (445)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i-~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~-~~-~~~~~~~~  350 (445)
                      ..+..+.++.+.+++.+++|.+....++ ...++.++.|++.||+++|+.+ ..+.++..+.....+. .. ...+.   
T Consensus       227 ~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~---  302 (390)
T TIGR02718       227 GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF-ILGVGLAGSLALLWFAQAAFWLAPG---  302 (390)
T ss_pred             HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHcccCCc---
Confidence            2234444455556777788988777765 5567788999999999988744 4454443222111111 11 00111   


Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhhHHHHhhccC-C-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHH
Q 013318          351 TLYPLIMAALLGIGDGVLNTQLSALLGILFKH-D-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICV  424 (445)
Q Consensus       351 ~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~-~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~  424 (445)
                      ....+....+.+++.+...+..++...+..++ + +++.++.++...++|..+|..+.+.    .++...+...+++.++
T Consensus       303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~  382 (390)
T TIGR02718       303 IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL  382 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            12233334444556666666667776676654 3 4567898888888888887766654    3444555555554444


Q ss_pred             HH
Q 013318          425 AL  426 (445)
Q Consensus       425 ~~  426 (445)
                      +.
T Consensus       383 a~  384 (390)
T TIGR02718       383 AI  384 (390)
T ss_pred             HH
Confidence            43

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.75  E-value=9.8e-17  Score=168.80  Aligned_cols=274  Identities=15%  Similarity=0.052  Sum_probs=167.3

Q ss_pred             hhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhhhc---------------
Q 013318           49 NLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFP---------------  109 (445)
Q Consensus        49 ~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~~~---------------  109 (445)
                      ...+++.++.+++...    .+.....++++.++.+++.||.|||+.+.+|.+++++..+.+..|               
T Consensus        54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~  133 (633)
T TIGR00805        54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSS  133 (633)
T ss_pred             hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccc
Confidence            3445665555555443    344555677888999999999999999999998887766543211               


Q ss_pred             -------------------------------------chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCcc
Q 013318          110 -------------------------------------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG  152 (445)
Q Consensus       110 -------------------------------------~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~  152 (445)
                                                           .+..++++|+++|+|.+..++...+|+.|+.          ++
T Consensus       134 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~----------~~  203 (633)
T TIGR00805       134 TGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA----------KS  203 (633)
T ss_pred             cccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC----------Cc
Confidence                                                 2456778999999999999999999999997          57


Q ss_pred             chhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccc---c-c---c-cc-CCCC--CcchhHHHHHHHHHHHHHHHHHhccC
Q 013318          153 TVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKV---C-A---A-LL-GGST--SGTTLLFIVFLGVITLGTILMCFLRK  221 (445)
Q Consensus       153 ~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~---~-~---~-~~-~~~~--~w~~~~~~i~~~l~~~~~~l~~~l~~  221 (445)
                      ++|++++|++++...+|+.+|++++..+.....+   . .   . ++ +..|  +|| ..|.+.+++.++..+..+++|+
T Consensus       204 ~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw-l~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       204 KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW-IGFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH-HHHHHHHHHHHHHHHHHHhCcc
Confidence            8999999999999999999999998876643210   0 0   0 00 0000  143 3354445544444444445554


Q ss_pred             Cccc--Ccc--cccccc---h--hh-----hhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cc
Q 013318          222 EEDK--GEK--ETADAS---V--NF-----YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PA  286 (445)
Q Consensus       222 ~~~~--~~~--~~~~~~---~--~~-----~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~  286 (445)
                      +.++  +++  +..+++   .  .+     ....++..+..++++|||.++......+...........+.|+++.+ .+
T Consensus       283 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g  362 (633)
T TIGR00805       283 ALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYG  362 (633)
T ss_pred             ccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2211  100  000000   0  00     01122334456678999988776554433322222223455555422 34


Q ss_pred             cccchhHHHHHHHHH-HHHHHHhhhhccccCCCCcc-chHhHHHHHHHH
Q 013318          287 LGVSGVGGAMAVYGA-FDAICSLAAGRLTTGLPSIT-FIVSGGAIAQVV  333 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i-~~~~g~~~~G~l~d~~g~~~-~~i~~g~~~~~~  333 (445)
                      ++.++.+++.....+ +.++|.++.|+++||++.+. ..+..+.++..+
T Consensus       363 ~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~  411 (633)
T TIGR00805       363 ISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTL  411 (633)
T ss_pred             CcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHH
Confidence            555677887776665 56789999999999987432 233444444333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=5.2e-16  Score=146.53  Aligned_cols=312  Identities=14%  Similarity=0.046  Sum_probs=186.6

Q ss_pred             HHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhc
Q 013318           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (445)
Q Consensus        68 ~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~  146 (445)
                      +.....++++..|.++||+|||++++.|.+...++-.. ....|+..++.+|++.|+-.|-+-+. -++++|..      
T Consensus        77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~------  149 (451)
T KOG2615|consen   77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVI-RAIISDVV------  149 (451)
T ss_pred             HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH-HHHHHhhc------
Confidence            44455667778899999999999999999877765444 36778866666799999998876655 67888887      


Q ss_pred             cCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHH----HHHHHhccCC
Q 013318          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLG----TILMCFLRKE  222 (445)
Q Consensus       147 ~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~----~~l~~~l~~~  222 (445)
                          +||+|++.++.....+++|.++||.++.++.+.....     + .-|.   +..-.+..+.+    +...+++||+
T Consensus       150 ----sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~-----g-~~p~---alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  150 ----SEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSIS-----G-SYPF---ALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             ----ChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhh-----c-cCch---HHHHHHHHHHHHHHHHHHHHhCCcc
Confidence                4789999999999999999999999999887622110     0 1122   22111111111    2234778875


Q ss_pred             cccCcccccccchhhhhHHHHHHH-----HHHHhhccchhHHHH--------HHHHHHHHHHHHHHhhhcccccccccc-
Q 013318          223 EDKGEKETADASVNFYSYLVSLSK-----SITTLLADVRMLLII--------PLFAYSGLQQAFVWAEFTKEIVTPALG-  288 (445)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~l~--------~~~~~~g~~~~f~~~~~~~~~~~~~~~-  288 (445)
                      -+.++++..+.+..+..+.+++..     .-...+||++..-.+        -.+.|.-+. ..+ ..+...+.+.+++ 
T Consensus       217 L~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~-s~~-~~t~~~l~~~rfg~  294 (451)
T KOG2615|consen  217 LPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELF-SGL-ENTVLFLTHGRFGY  294 (451)
T ss_pred             ccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHH-HHH-HhhHHHhhcCccCC
Confidence            432221100000000000000000     011234444322100        011111111 111 1112222223344 


Q ss_pred             -cchhHHHHHHHHHHHHHHHhhhhccccCCCC-ccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhh
Q 013318          289 -VSGVGGAMAVYGAFDAICSLAAGRLTTGLPS-ITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG  366 (445)
Q Consensus       289 -~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~-~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  366 (445)
                       ..+.|.+....|+...+.+....+..||.+. .+..+..+..+..-.++  ++.+...+     ..++....+..++.+
T Consensus       295 ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~l--lls~~~~~-----~~l~~~s~l~sf~~A  367 (451)
T KOG2615|consen  295 SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFL--LLSLARTP-----VVLYLGSTLKSFSTA  367 (451)
T ss_pred             ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH--HHhccccc-----hhhhHHHHHHHHHHH
Confidence             4467887777777777777777777777541 12233333333322322  34555442     457788888999999


Q ss_pred             hhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          367 VLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       367 ~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      ...|.+..+.....|++ ++++.|+.+...+++-++|+.+++.
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence            99999999999998876 5567899999999999999988843

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.71  E-value=2.3e-15  Score=155.60  Aligned_cols=139  Identities=19%  Similarity=0.194  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~  143 (445)
                      .+..+...+++++++|+++|++|||++++++.+.+.+..+.. .++|+..++++|++.|+|.|........|++|.+   
T Consensus        95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia---  171 (513)
T KOG0254|consen   95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA---  171 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC---
Confidence            455566677899999999999999999999999888876654 7889999999999999999999999999999998   


Q ss_pred             hhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc
Q 013318          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  223 (445)
Q Consensus       144 ~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~  223 (445)
                             |++.||...+.++.....|..+|..++......          .++||. .+.+..+.+++..+..+++||++
T Consensus       172 -------p~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~----------~~~Wr~-~~~~~~i~~~~~~~~~~~~pesp  233 (513)
T KOG0254|consen  172 -------PAHIRGTLVSLYQLFITIGILLGYCINYGTSKV----------YAGWRI-PLGLALIPAVILALGMLFLPESP  233 (513)
T ss_pred             -------ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC----------CccHHH-HHHHHHHHHHHHHHHHHhCCCCh
Confidence                   467999999999888888877775554433211          036873 33333333333333356777654


Q ss_pred             c
Q 013318          224 D  224 (445)
Q Consensus       224 ~  224 (445)
                      +
T Consensus       234 ~  234 (513)
T KOG0254|consen  234 R  234 (513)
T ss_pred             H
Confidence            3

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.69  E-value=2.9e-17  Score=148.72  Aligned_cols=355  Identities=14%  Similarity=0.203  Sum_probs=201.8

Q ss_pred             HHHHhhhHhhhhhhccCCCCchHHHHHHHHHHH----HhhhhHHHHHHH-hCcchhh-hhhhHH---HHHHHHHhhhcch
Q 013318           41 FLAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRV-LGSKNAL-ILGTTG---YWLFVAANLFPSW  111 (445)
Q Consensus        41 ~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~a----i~~l~~g~l~dr-~G~k~~l-~~g~~~---~~~~~~~~~~~~~  111 (445)
                      |.+|+....++..+..+.++.+.....+|..+.    +-+++.|+++|| +|.|+.- +.+.++   ..+++++...+.+
T Consensus        57 yfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aF  136 (459)
T KOG4686|consen   57 YFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAF  136 (459)
T ss_pred             eeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            666778888888887777777766666666553    566789999995 7877633 333332   2344445567899


Q ss_pred             hhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccccccc
Q 013318          112 YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALL  191 (445)
Q Consensus       112 ~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~  191 (445)
                      ++++..|++.|+|.-..-++|++|...|+          ..||.+.++|++-+..-+|..+--.+...+......    .
T Consensus       137 w~M~~GRF~FGIGgESlAVaQN~yav~wF----------KGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~----~  202 (459)
T KOG4686|consen  137 WTMLAGRFLFGIGGESLAVAQNKYAVYWF----------KGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR----M  202 (459)
T ss_pred             HHHHhhheeeccCchhhhhhhcceeEEEe----------cCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH----h
Confidence            99999999999999999999999999887          478999999999887777766544333333322110    0


Q ss_pred             CCCCCcchh--HHHHHHHH-HHHHHHHHH---hccCCcc-cCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHH
Q 013318          192 GGSTSGTTL--LFIVFLGV-ITLGTILMC---FLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLF  264 (445)
Q Consensus       192 ~~~~~w~~~--~~~i~~~l-~~~~~~l~~---~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  264 (445)
                      .+..+ ++.  ++..+.+. +....+...   +.+++.+ .-.++  +....+.++. +   +. + -..|.+|.+..  
T Consensus       203 ~~~~g-hT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e--~g~~Ge~pkL-t---dv-~-~f~ppfw~~~i--  271 (459)
T KOG4686|consen  203 FPGVG-HTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLE--EGFLGEEPKL-T---DV-N-TFYPPFWVLVI--  271 (459)
T ss_pred             cccch-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh--cCcccCCccc-c---cc-c-ccCccHHHHHH--
Confidence            00011 110  01111111 111111111   1111111 00000  0000000000 0   00 1 12345555432  


Q ss_pred             HHHHHHHHHHHhhhcc-----ccccccccc--chhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHH
Q 013318          265 AYSGLQQAFVWAEFTK-----EIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW  337 (445)
Q Consensus       265 ~~~g~~~~f~~~~~~~-----~~~~~~~~~--~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~  337 (445)
                          ++..|+..++|.     .+-.+.+|.  ...+-+.+..-..+++.++++|.++||.|++..++..+.+...++-..
T Consensus       272 ----icv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~  347 (459)
T KOG4686|consen  272 ----ICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG  347 (459)
T ss_pred             ----HHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh
Confidence                223333344432     121222343  345556665555567888999999999998865544444444433221


Q ss_pred             HHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhc--------c
Q 013318          338 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP--------Y  408 (445)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~--------~  408 (445)
                        +.++.       .-+++...++|+..+..--..+..++.+.|++ .+++||..+.+|++|-++..++++        +
T Consensus       348 --l~Ft~-------lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y  418 (459)
T KOG4686|consen  348 --LFFTF-------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY  418 (459)
T ss_pred             --HHhhh-------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence              22221       12456677888887777666778888899987 467999999999999877666653        3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          409 ISLQAMLIVMVVGICVALVGILFLT  433 (445)
Q Consensus       409 ~~~~~~~~i~~~~~~~~~~~~~~~~  433 (445)
                      ...+.-+.+...+.+.+....+.+.
T Consensus       419 ~~le~ffl~~~~~aL~svgil~~~N  443 (459)
T KOG4686|consen  419 DNLEAFFLIIGLMALTSVGILFYLN  443 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhee
Confidence            3455555555555555554444333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.69  E-value=4.1e-14  Score=144.94  Aligned_cols=308  Identities=11%  Similarity=0.077  Sum_probs=174.6

Q ss_pred             HHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhc
Q 013318           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (445)
Q Consensus        68 ~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~  146 (445)
                      .....++++++.|+++|.+|||+.++.+.++..+..+.. .++|..+++.+-++.|+|.|..... ...++|..      
T Consensus        87 ~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~-~~~isEl~------  159 (599)
T PF06609_consen   87 WTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELA-ALAISELV------  159 (599)
T ss_pred             HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHH-HHHHHHhc------
Confidence            344677889999999999999999999999888877654 7899999999999999999887654 33467776      


Q ss_pred             cCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCccc
Q 013318          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDK  225 (445)
Q Consensus       147 ~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l-~~~l~~~~~~  225 (445)
                          |.+.|+...++....+-....+|+.++..+..+           .+||. .|.+..++..+++++ .+|..+|++.
T Consensus       160 ----p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-----------~~WRw-~~~~~~i~~~i~~vl~~~fY~PP~~~  223 (599)
T PF06609_consen  160 ----PNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-----------SGWRW-IFYIFIIWSGIALVLIFFFYFPPPRA  223 (599)
T ss_pred             ----ccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-----------CCcch-HHHHHHHHHHHHHHHHHHHhCCCchh
Confidence                456676655554433333334566666544322           25764 444555555555543 3444333221


Q ss_pred             C--cccccccch----h----------------------h-hhH---------------------HHHHH---HH---HH
Q 013318          226 G--EKETADASV----N----------------------F-YSY---------------------LVSLS---KS---IT  249 (445)
Q Consensus       226 ~--~~~~~~~~~----~----------------------~-~~~---------------------~~~~~---~~---~~  249 (445)
                      +  .++.++++.    +                      . ..+                     .+|.+   ++   ..
T Consensus       224 ~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~  303 (599)
T PF06609_consen  224 QLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPH  303 (599)
T ss_pred             hhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCH
Confidence            1  111000000    0                      0 000                     01110   00   23


Q ss_pred             Hhhccchh-HHHHHHHHHHHHHHHHHHhhhccc---cc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchH
Q 013318          250 TLLADVRM-LLIIPLFAYSGLQQAFVWAEFTKE---IV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV  324 (445)
Q Consensus       250 ~~l~~~~~-~~l~~~~~~~g~~~~f~~~~~~~~---~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i  324 (445)
                      +++|++|- .......+..|....-....+|+.   +. ++..+....+......+++..+|..+.|.+..++++-|..+
T Consensus       304 ~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l  383 (599)
T PF06609_consen  304 RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQL  383 (599)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHH
Confidence            56777553 333333334443221111233332   11 12222235667777888888899998998888877666565


Q ss_pred             hHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHH
Q 013318          325 SGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~  403 (445)
                      +.+.++..+.+.. +....++..    ...+...++-|++.+........+..-..|++ .+.+.|+...++.+|.++|.
T Consensus       384 i~~~~~~ta~~Ga-ma~~~~~n~----~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~  458 (599)
T PF06609_consen  384 IFGSVLMTAFCGA-MAAVRPDNK----NAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGY  458 (599)
T ss_pred             HHHHHHHHHHHHH-HHHccCCCc----chHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHH
Confidence            6666555443221 223333321    22344555666766666555555555556765 45577887788888777764

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09669 putative symporter YagG; Provisional

Probab=99.68  E-value=5.6e-14  Score=142.68  Aligned_cols=320  Identities=9%  Similarity=-0.024  Sum_probs=175.0

Q ss_pred             hccCCCCchHHHHHHHH----HHHHhhhhHHHHHHH----hCcch-hhhhhhHHHHHHHHH-hhhcc------hhhHHhH
Q 013318           54 VNTEGNLGTISLGILYT----SFTCFSLVASLVVRV----LGSKN-ALILGTTGYWLFVAA-NLFPS------WYTMVPA  117 (445)
Q Consensus        54 i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr----~G~k~-~l~~g~~~~~~~~~~-~~~~~------~~~li~~  117 (445)
                      ..++.+++....+.+..    ..++..++.|.++||    +|||| .++.+....++.... +..|+      ...+++.
T Consensus        36 ~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~  115 (444)
T PRK09669         36 YTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVT  115 (444)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence            34456777665555444    456788899999998    77755 455565555554433 33443      2233345


Q ss_pred             HHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCc
Q 013318          118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSG  197 (445)
Q Consensus       118 r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w  197 (445)
                      ..+.+.+.+...+...+..++.++         +++||.+..++...+..+|..+++.+...+...... +   ....+|
T Consensus       116 ~~l~~~~~t~~~ip~~al~~~~t~---------~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~-~---~~~~g~  182 (444)
T PRK09669        116 YILLSLVYTAINVPYCAMPGAITN---------DPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK-G---DEQKGY  182 (444)
T ss_pred             HHHHHHHHHhhcchHHHhHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C---chhhhH
Confidence            556666666666566677777763         457899988888888888887777654333221110 0   001245


Q ss_pred             chhHHHHHHHHHHHHHHHHH-hccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 013318          198 TTLLFIVFLGVITLGTILMC-FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWA  276 (445)
Q Consensus       198 ~~~~~~i~~~l~~~~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~  276 (445)
                      + ..+.+++++..+..++.+ ..+|+++++ ++  +     +.+.+   ++..+.+|||.++.+....+......... +
T Consensus       183 ~-~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~--~-----~~~~~---~~~~~~~~n~~~~~l~~~~~~~~~~~~~~-~  249 (444)
T PRK09669        183 F-YAMMVMGLLGVVLFFCCFFMTKERYTPE-VD--N-----SSSVW---KDLKLLLGNSQWRIMFIFNVVLLTAVVTR-G  249 (444)
T ss_pred             H-HHHHHHHHHHHHHHHHHhCCeEEecCCC-Cc--C-----CCCHH---HHHHHHhCCchHHHHHHHHHHHHHHHHHH-h
Confidence            4 234444444433333322 234332111 11  0     11122   23445678998876654433332222111 1


Q ss_pred             hhcccccccccccc-hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHH
Q 013318          277 EFTKEIVTPALGVS-GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPL  355 (445)
Q Consensus       277 ~~~~~~~~~~~~~~-~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (445)
                      .+..++.+..++.. ..+.+.....+..+++.++++++.||+|+|+.. ..+.++..++... ....++++    ....+
T Consensus       250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~-~~~~~~~~~~~~~-~~~~~~~~----~~~~~  323 (444)
T PRK09669        250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF-KWTIVAFVILSAL-IFFIPPSN----VWLIF  323 (444)
T ss_pred             hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHH-HHHhCcch----HHHHH
Confidence            12222222222222 233445556677788888999999999987743 4554443332221 11222221    23455


Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHhhccCC-------chh-hHHHHHHHHHHHHHHHHHh
Q 013318          356 IMAALLGIGDGVLNTQLSALLGILFKHD-------TEG-AFAQLKVWQCASIAVVFFI  405 (445)
Q Consensus       356 ~~~~l~G~~~~~~~~~~~~~l~~~~~~~-------~~~-a~~~~~~~~~~g~~ig~~i  405 (445)
                      +..+++|++.+...+..+++++|..+.+       ++. .+|.+++.+.+|.++|..+
T Consensus       324 ~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i  381 (444)
T PRK09669        324 ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAV  381 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            6667899999999999999999987522       122 3677777776666655433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.67  E-value=4.5e-14  Score=138.58  Aligned_cols=376  Identities=11%  Similarity=0.090  Sum_probs=196.7

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhh-ccCCCCchHHHHHHHHHHHH----hhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTV-NTEGNLGTISLGILYTSFTC----FSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~~~~g~~~~~~~~~~~ai----~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      ..+++.+.+++.++.+|..+....+..+.= .++.+++....+++++..++    .+++.|.+.||+|.||-+++.....
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l   83 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL   83 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence            345678888888888888877665554433 33468888888888776643    5667899999999888776554332


Q ss_pred             HHH----HHHhhh----cch-hhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhh
Q 013318          100 WLF----VAANLF----PSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ  170 (445)
Q Consensus       100 ~~~----~~~~~~----~~~-~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~  170 (445)
                      .+.    ..-.+.    .|+ ...++..+..|+......+..=+|+.+++.+    .+  .|=-|.|.-      .++|.
T Consensus        84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~----~~--feYG~~R~w------GSig~  151 (412)
T PF01306_consen   84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR----NG--FEYGRARMW------GSIGF  151 (412)
T ss_dssp             HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH----HS--S-HHHHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH----hc--CCcchHHHH------hhHHH
Confidence            221    111111    222 1222233333443333333333444444322    11  111233433      35777


Q ss_pred             hhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccC--cccccccchhhhhHHHHHHHHH
Q 013318          171 FVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG--EKETADASVNFYSYLVSLSKSI  248 (445)
Q Consensus       171 ~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      +++..+++.+....+             ...+++..+..++..++.++.+++.+++  .+|..+   .++  .+...++.
T Consensus       152 ai~s~~~G~L~~i~p-------------~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~  213 (412)
T PF01306_consen  152 AIASLLAGILFNINP-------------NIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG---AKK--DKVSLKDV  213 (412)
T ss_dssp             HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS---S--------HHHH
T ss_pred             HHHHHHhheeeeeCc-------------cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc---cCC--CCCcHHHH
Confidence            777777766553221             2234443333333333333333221111  111111   011  11234567


Q ss_pred             HHhhccchhHHHHHHHHHHH-HHHHHH---HhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchH
Q 013318          249 TTLLADVRMLLIIPLFAYSG-LQQAFV---WAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV  324 (445)
Q Consensus       249 ~~~l~~~~~~~l~~~~~~~g-~~~~f~---~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i  324 (445)
                      .+++|+|++|.+..+..... ....|-   ...+.....+.+.+.+..|+..+.--+.+++.-.+.+++.+|+|.|+.++
T Consensus       214 ~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll  293 (412)
T PF01306_consen  214 LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL  293 (412)
T ss_dssp             HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH
Confidence            78999999987665333221 111221   12222233334455566788888888888888888999999999998665


Q ss_pred             hHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHH-HHHHHHHHHHHH
Q 013318          325 SGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQ-LKVWQCASIAVV  402 (445)
Q Consensus       325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~-~~~~~~~g~~ig  402 (445)
                      +.+ ++..+=+.  ...+.++     +..+...-.+-++-.........-++.+.+|++. ++.+.+ +++..++|..+.
T Consensus       294 lag-~i~~iRi~--~~~~~~~-----~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~  365 (412)
T PF01306_consen  294 LAG-VIMAIRII--GSGFATN-----PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL  365 (412)
T ss_dssp             HHH-HHHHHHHH--HHHT--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHH-HHHHHHHH--HHhhhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            444 44444332  3345544     3456677788888888888888889999998774 345664 455556665544


Q ss_pred             HHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013318          403 FFIGPY----ISLQAMLIVMVVGICVALVGILFLTIQVEK  438 (445)
Q Consensus       403 ~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  438 (445)
                      ..+.+.    .++...+.+++.+.+...+...+..++.+|
T Consensus       366 s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  366 SPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             hhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            333332    355555666666555555545555444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.66  E-value=2.5e-13  Score=135.12  Aligned_cols=346  Identities=17%  Similarity=0.083  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHHHHH----HhhhhHHHHHHHhC-cchhhhhhhHHHHHHHHH
Q 013318           31 HILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRVLG-SKNALILGTTGYWLFVAA  105 (445)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~a----i~~l~~g~l~dr~G-~k~~l~~g~~~~~~~~~~  105 (445)
                      ..++.-+++.|..+....+..+...++.+.+....+++++...    +++++.|.++||.+ +||.+.+..++-++....
T Consensus         5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~   84 (400)
T PF03825_consen    5 FRLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL   84 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            4556666666777666666666666677788777777766544    45667889999986 567776665544443332


Q ss_pred             -hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHH-HHHhhcC
Q 013318          106 -NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI-TLAVLKD  183 (445)
Q Consensus       106 -~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li-~~~l~~~  183 (445)
                       ...+++..++..-++..+...+..+-..++..++..            ++++.+|-.-...++|.+++.+. ...+...
T Consensus        85 ~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~------------~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~  152 (400)
T PF03825_consen   85 LAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG------------DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY  152 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc------------cccCCCCcchhhhhHHHHHHHHHHHHHHHhh
Confidence             234556555554455555555444444444444431            22222332222334555555432 1222111


Q ss_pred             ccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHH
Q 013318          184 DKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL  263 (445)
Q Consensus       184 ~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  263 (445)
                      .+         .+.....+.+...+..+.....+.+|+.+++++++.+.    +    +...++..+++|+|+++.....
T Consensus       153 ~~---------~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~----~----~~~~~~~~~llk~~~~~~Fll~  215 (400)
T PF03825_consen  153 LG---------ISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESV----K----KLLGLDALKLLKNPRFLVFLLA  215 (400)
T ss_pred             hc---------cccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCc----c----cccchHHHHHhcCccHHHHHHH
Confidence            11         11111223333333322222234566543211111010    0    0111234578999998766555


Q ss_pred             HHHHHHHHHHHHhhhcccccccc-cccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013318          264 FAYSGLQQAFVWAEFTKEIVTPA-LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINY  342 (445)
Q Consensus       264 ~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~  342 (445)
                      .+..+...+.+.+..+.++.+.+ ...+.+|...++..+++++.-...+++.+|+|.++ ++.++.+..++=+.  +..+
T Consensus       216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~-ll~~a~~~~~vR~~--l~a~  292 (400)
T PF03825_consen  216 AFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW-LLLLALVAYAVRWL--LYAY  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHH--HHHH
Confidence            55566554444344444443333 33456677777788888888889999999999886 45677666666543  2233


Q ss_pred             cCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHH-HHHHHHHHHHhhcc
Q 013318          343 SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVW-QCASIAVVFFIGPY  408 (445)
Q Consensus       343 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~-~~~g~~ig~~i~~~  408 (445)
                      .+++........++...+.|+..+........++.+..|++.+ ++-++++.. ..+|..+|..++++
T Consensus       293 ~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  293 FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3222110001112223568999888888888999999998854 577776654 35677666655543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.66  E-value=1.7e-14  Score=139.17  Aligned_cols=269  Identities=12%  Similarity=0.048  Sum_probs=167.2

Q ss_pred             hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccc
Q 013318          108 FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVC  187 (445)
Q Consensus       108 ~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~  187 (445)
                      ..++..++++-++.|.|.+..-++.+.|+++..          +++++.+.+++.++++++|..+||+++..+......+
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~----------~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~   76 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILG----------PIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGD   76 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHC----------CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcc
Confidence            356788888999999999999999999999997          4668999999999999999999999988665322100


Q ss_pred             cc-c---c-CCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHH-H
Q 013318          188 AA-L---L-GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI-I  261 (445)
Q Consensus       188 ~~-~---~-~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-~  261 (445)
                      .. +   . ....+|+ ..|.+.+.+..+..+...+.+.|+.+++++ ++.+. ++..      +..+.+|+|++++. .
T Consensus        77 ~~~~~~~~~~~~~~~~-~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~-~~~~~-~~~~------~~~~~~~~~~~~l~~~  147 (310)
T TIGR01272        77 LSMQVATANAEAAKVH-TPYLLLAGALAVLAIIFAFLPLPELQEADV-ARVSS-GDTT------QKTSAFQFTHLVLGAL  147 (310)
T ss_pred             hhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHccCCCCCcccc-ccccc-cccc------chhhHHhhHHHHHHHH
Confidence            00 0   0 0002343 455544444333333334554333222111 11000 0000      01134556666543 3


Q ss_pred             HHHHHHHHHHHHHHhhhcccccc---cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH
Q 013318          262 PLFAYSGLQQAFVWAEFTKEIVT---PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI  338 (445)
Q Consensus       262 ~~~~~~g~~~~f~~~~~~~~~~~---~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~  338 (445)
                      ..++|.|.+.+.. ++++.++.+   .+++.++.+...+.++.+.++|+++.+++.||+++|+. +..+.++..++.++ 
T Consensus       148 ~~f~yvg~e~~~~-~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~-l~~~~~l~~~~~~l-  224 (310)
T TIGR01272       148 GIFVYVGAEVSAG-SFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY-LAFNAFLAVLLSIG-  224 (310)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHH-
Confidence            4566777776543 445544432   25566678888999999999999999999999998774 45555554444321 


Q ss_pred             HhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhh
Q 013318          339 LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      . ...+.      .......++.|++.+...|...+...+..|++.+++.++.. ...+|.++++.+.
T Consensus       225 ~-~~~~~------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~~-~~~~Gg~i~P~l~  284 (310)
T TIGR01272       225 A-ALTHG------YVAMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGILC-LAIVGGAIVPLLQ  284 (310)
T ss_pred             H-HHcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HHHhcchHHHHHH
Confidence            1 12222      12223555789999999999999888888877666656543 3446666655443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.66  E-value=1.7e-13  Score=138.28  Aligned_cols=393  Identities=12%  Similarity=0.060  Sum_probs=198.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHH----HHHHhhhhHHHHHH----HhCcchhhhhhhHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYT----SFTCFSLVASLVVR----VLGSKNALILGTTGY   99 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~d----r~G~k~~l~~g~~~~   99 (445)
                      ++++.++..++-+=.+|.......+.+.++.+.+....+.+..    ...+.+++.|+++|    |+||||.++++....
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            3444554444444444444444444444445555544333332    44667889999999    599999998864433


Q ss_pred             H-HHHHH-hhhcchh-----------------hHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccc--hhhhh
Q 013318          100 W-LFVAA-NLFPSWY-----------------TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGT--VIGSF  158 (445)
Q Consensus       100 ~-~~~~~-~~~~~~~-----------------~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~--~rg~~  158 (445)
                      . +.... .+.++..                 ..++.-.+..++.....+...++++|..|          ++  +++++
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p----------~~~~~~~~a  153 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTG----------GDARRTRIA  153 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----------chhHHHHHH
Confidence            2 22222 2333321                 11111122333555555556677777764          33  34789


Q ss_pred             hhHHHHHHHHhhhhhhHHHHHhhcC-------ccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCcccc
Q 013318          159 NGEFWGMFASHQFVGNLITLAVLKD-------DKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKET  230 (445)
Q Consensus       159 ~g~~~~~~~lg~~iG~li~~~l~~~-------~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~  230 (445)
                      .++...+.++|.++|+.++......       ...|+..    -...+..|.+-+++.++..++. +++||++..++++.
T Consensus       154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~  229 (477)
T TIGR01301       154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVS----CANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF  229 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccc----cchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc
Confidence            9998888899999999888754211       1111100    0112344555444444444444 45676432111110


Q ss_pred             --cccchhhhhHHHHHHHHHHHhhcc--chhHHHHHHHHH--HHHHH-HHHHh-hhcccccc--cccc--cch---hH-H
Q 013318          231 --ADASVNFYSYLVSLSKSITTLLAD--VRMLLIIPLFAY--SGLQQ-AFVWA-EFTKEIVT--PALG--VSG---VG-G  294 (445)
Q Consensus       231 --~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~~~~--~g~~~-~f~~~-~~~~~~~~--~~~~--~~~---~g-~  294 (445)
                        ++.+..++.+.+..++++++.+|+  |.++.+....++  .|+.. .++.+ +..+.+..  ++-+  .++   .| +
T Consensus       230 ~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~  309 (477)
T TIGR01301       230 INSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAF  309 (477)
T ss_pred             hhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHH
Confidence              000000000111222333333333  334444443333  33321 11112 22222211  0000  011   23 3


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH-hhc-cCC--C---------Cccc-hhHHHHHHHH
Q 013318          295 AMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INY-SVT--S---------GVLG-TLYPLIMAAL  360 (445)
Q Consensus       295 ~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~-~~~-~~~--~---------~~~~-~~~~~~~~~l  360 (445)
                      .+..+++.+.+.+++..++.+|+|+|+.+-..+.++.++++...+ ... +++  +         ...+ ....++...+
T Consensus       310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (477)
T TIGR01301       310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI  389 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence            455677777788888899999998655454566555555543222 221 100  0         0000 1346677888


Q ss_pred             HhhhhhhhhhhhhHHHHhhccCC-c--hhhHHHHHHHHHHHHHHHHH----hhcch--hHHHHHHHHHHHHHHHHHHHHH
Q 013318          361 LGIGDGVLNTQLSALLGILFKHD-T--EGAFAQLKVWQCASIAVVFF----IGPYI--SLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       361 ~G~~~~~~~~~~~~~l~~~~~~~-~--~~a~~~~~~~~~~g~~ig~~----i~~~~--~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      .|+..+..++..++++++..|++ +  +...|++|..-.+...+.-+    +.+..  +..+.+.+-++..+++.+..++
T Consensus       390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998843 2  34679999888776544332    22222  2344555555566666665554


Q ss_pred             HHH
Q 013318          432 LTI  434 (445)
Q Consensus       432 ~~~  434 (445)
                      +..
T Consensus       470 ~~~  472 (477)
T TIGR01301       470 LLP  472 (477)
T ss_pred             hCC
Confidence            443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.65  E-value=1e-12  Score=133.44  Aligned_cols=365  Identities=14%  Similarity=0.115  Sum_probs=201.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHH-HHHHh-h-hc-chhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAAN-L-FP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~-~~~~~-~-~~-~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      .++-....++..++.|.++|+-|+||.++......+. .++.. + .| ++....+.-++.-++.+...+--++++.+.+
T Consensus        76 ~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la  155 (477)
T PF11700_consen   76 NSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence            3444445677788899999999988887776654433 33333 2 23 3333333333333444444555577888877


Q ss_pred             hhhhhccCCC----------------ccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHH
Q 013318          141 LSHASNHKLH----------------EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIV  204 (445)
Q Consensus       141 ~~~~~~~~~~----------------~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i  204 (445)
                      +++.+..+..                .+.+|++..|.-++...+|..+--++...+....+...   .+..+-| ..+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~---~~~~~~r-~~~~~  231 (477)
T PF11700_consen  156 RPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTA---SNTWAIR-VAFLI  231 (477)
T ss_pred             CCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---ccchhhh-HHHHH
Confidence            5432210000                00113888888777777777666655554443332100   0011112 12222


Q ss_pred             HHHHHH-HHHHHHHhccCCcc-cCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHH-HHH-HHHHHHHH-Hhhhc
Q 013318          205 FLGVIT-LGTILMCFLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL-FAY-SGLQQAFV-WAEFT  279 (445)
Q Consensus       205 ~~~l~~-~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~-~g~~~~f~-~~~~~  279 (445)
                      .++..+ .+....+++|++++ ++.++.   +......+++..+..++..|+|.....+.. +++ -|+..... ...|.
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~---~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a  308 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPGPRPLPSG---SSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYA  308 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCcc---hhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211 22223355666543 111111   101122333333333334445554433322 222 23332111 12222


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCc--cchHhHHHHHHHHHHHHHHhhccCCC-CccchhHHHH
Q 013318          280 KEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSI--TFIVSGGAIAQVVVFLWILINYSVTS-GVLGTLYPLI  356 (445)
Q Consensus       280 ~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~--~~~i~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  356 (445)
                      ..  +-+++..+...+.....+.+++|++++|++.||+|.|  + .+..+.++..+..++.++.+.++. ..-...-.++
T Consensus       309 ~~--~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~-~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~  385 (477)
T PF11700_consen  309 TE--VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR-TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV  385 (477)
T ss_pred             HH--hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence            21  1234455666677788899999999999999999987  5 344544443222122222111110 0001245788


Q ss_pred             HHHHHhhhhhhhhhhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHHHHH
Q 013318          357 MAALLGIGDGVLNTQLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIGPY-----ISLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       357 ~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~~~-----~~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      ..+++|+..+..++..-++.+++.|++++. -||+|.+..-.++.+|+++-+.     .+....+..+.++++++.+++.
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999998775 6899998887777777765432     3678888888999999999887


Q ss_pred             HHHHHHHhh
Q 013318          431 FLTIQVEKA  439 (445)
Q Consensus       431 ~~~~~~~~~  439 (445)
                      ++..++.|+
T Consensus       466 ~v~~~~g~~  474 (477)
T PF11700_consen  466 FVDVEKGRE  474 (477)
T ss_pred             hccchhhhh
Confidence            776554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.64  E-value=4.9e-14  Score=146.12  Aligned_cols=316  Identities=11%  Similarity=0.024  Sum_probs=181.3

Q ss_pred             CCCchHHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHH
Q 013318           58 GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (445)
Q Consensus        58 ~~~g~~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i  136 (445)
                      ........++++....+|+++.|+++||+|||++++++.++..++... .+++|+..+++.|++.|++.+........++
T Consensus       117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            344455678888899999999999999999999999999988876665 4799999999999999999999999999999


Q ss_pred             HHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 013318          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM  216 (445)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~  216 (445)
                      +|+.          ++++|+.+..+ ....-.++.+++....++..             +||. .+++......+.+++.
T Consensus       197 ~E~~----------~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------------~Wr~-~~~~~~~~~~~~~~~~  251 (521)
T KOG0255|consen  197 AEIV----------SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------------DWRW-LFWIISIPSGLFLLLW  251 (521)
T ss_pred             eeec----------CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------------hHHH-HHHHHHHHHHHHHHHH
Confidence            9997          57899999998 66666777777766665542             3764 3444343333333333


Q ss_pred             HhccCCccc----Cccccc-c--cc--------hhhhhHHHHH--H-----------HHHHHhhccchhHHHHHHHHHHH
Q 013318          217 CFLRKEEDK----GEKETA-D--AS--------VNFYSYLVSL--S-----------KSITTLLADVRMLLIIPLFAYSG  268 (445)
Q Consensus       217 ~~l~~~~~~----~~~~~~-~--~~--------~~~~~~~~~~--~-----------~~~~~~l~~~~~~~l~~~~~~~g  268 (445)
                      ++.+|.++-    .+.++. +  ++        ..........  .           .....+++.|++........+..
T Consensus       252 ~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~  331 (521)
T KOG0255|consen  252 FLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIW  331 (521)
T ss_pred             HccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHH
Confidence            334354331    111100 0  00        0000000000  0           01223445544333222222222


Q ss_pred             HHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCc
Q 013318          269 LQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGV  348 (445)
Q Consensus       269 ~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~  348 (445)
                      +....  .++...+...+++. .........+.....+....+...|+.|||... ..+..+..+++++  ..+.+....
T Consensus       332 ~~~~~--~y~gl~~~~~~lg~-~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~-~~~~~~~~~~~~~--~~~~~~~~~  405 (521)
T KOG0255|consen  332 FVFSL--VYYGLSLNVSGLGG-NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPL-FLSLFLAGIGLLL--FGWLPDDLG  405 (521)
T ss_pred             HHHhH--HHHhhhhhhhhcCc-hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHH--HHHhhccch
Confidence            21111  12221121222332 223334445556666666778889999888643 4555554444332  233332210


Q ss_pred             cchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhh
Q 013318          349 LGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       349 ~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~  406 (445)
                        ..+..+...+-.++.+......+...+|++|+..+ .+.+..+....+|...++.+.
T Consensus       406 --~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~  462 (521)
T KOG0255|consen  406 --GWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFP  462 (521)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01222222222223333333447888999998855 466777777777776665444

>TIGR00788 fbt folate/biopterin transporter

Probab=99.64  E-value=3.7e-13  Score=137.32  Aligned_cols=335  Identities=13%  Similarity=0.073  Sum_probs=195.7

Q ss_pred             hhhhhhccCCCCchHHHHH----HHHHHHHhhhhHHHHHHHhC-----cchhhhhhhHHHH-HHHHHh-hhcchhhHH-h
Q 013318           49 NLETTVNTEGNLGTISLGI----LYTSFTCFSLVASLVVRVLG-----SKNALILGTTGYW-LFVAAN-LFPSWYTMV-P  116 (445)
Q Consensus        49 ~~~~~i~~~~~~g~~~~~~----~~~~~ai~~l~~g~l~dr~G-----~k~~l~~g~~~~~-~~~~~~-~~~~~~~li-~  116 (445)
                      .+.+.+.++.+++....+.    ....+++ .++.|+++||++     ||+.++++.++.+ +..... ..++..... .
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~  125 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAA  125 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            4455556566777765533    3333444 445999999998     7778888876552 221111 224433333 4


Q ss_pred             HHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCC
Q 013318          117 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTS  196 (445)
Q Consensus       117 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~  196 (445)
                      ..++.+++.+...++.-.+..|..++        +++.++...+..|.....|..+|+.+++.+...           .+
T Consensus       126 ~~~l~~~~~a~~dv~~da~~~e~~~~--------~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~-----------~~  186 (468)
T TIGR00788       126 FIFLAALAKALYDVLVDSLYSERIRE--------SPSAGPSLVSWMWGASATGGLISSLLGGPLLDK-----------TL  186 (468)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhhhc--------CCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh-----------cC
Confidence            78899999999999988888888741        233445556667777778999999888776533           25


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhccCCcc--cCcccccc------cchhhhhHHHHHHHHHHHhhccchhHHHHH-HHH-H
Q 013318          197 GTTLLFIVFLGVITLGTILMCFLRKEED--KGEKETAD------ASVNFYSYLVSLSKSITTLLADVRMLLIIP-LFA-Y  266 (445)
Q Consensus       197 w~~~~~~i~~~l~~~~~~l~~~l~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~-~  266 (445)
                      |+. .|.+.+++.++..+..++++|++.  .++.+..+      ...+.....++..++.++.+++|+++.... .++ +
T Consensus       187 ~~~-~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~  265 (468)
T TIGR00788       187 TRI-LFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSY  265 (468)
T ss_pred             cch-HHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence            654 444555555544444466777531  11110000      000011122344556667788888765332 222 1


Q ss_pred             HHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHh---hcc
Q 013318          267 SGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI---NYS  343 (445)
Q Consensus       267 ~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~---~~~  343 (445)
                      .... +...+.|.......+.+.+.+|.+....+++.+++....+++.+|++.|+ ++..+.++..++......   .|.
T Consensus       266 ~~~~-~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~-~l~~~~~l~~~~~~~~~~l~~~~~  343 (468)
T TIGR00788       266 ANLP-GASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL-LFGVTTLLYTLSSLFDLILVKRWN  343 (468)
T ss_pred             hhcC-CCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHHHhCceeeeeccc
Confidence            1110 11111111111123566778999999999999999999999999999876 445666655544321000   111


Q ss_pred             CCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhh
Q 013318          344 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       344 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      ......+....+...++.+++.+........++.+..|++. ++.+|+++..+++|..++..++
T Consensus       344 ~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g  407 (468)
T TIGR00788       344 LAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG  407 (468)
T ss_pred             cccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence            00000001123445566777777777777889999998875 4578988888888887766544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.64  E-value=5.6e-13  Score=136.48  Aligned_cols=323  Identities=12%  Similarity=0.080  Sum_probs=170.3

Q ss_pred             cCCCCchHHHHHHHH----HHHHhhhhHHHHHH----HhCcch-hhhhhhHHHHHHHHHh-hhcc------hhhHHhHHH
Q 013318           56 TEGNLGTISLGILYT----SFTCFSLVASLVVR----VLGSKN-ALILGTTGYWLFVAAN-LFPS------WYTMVPASL  119 (445)
Q Consensus        56 ~~~~~g~~~~~~~~~----~~ai~~l~~g~l~d----r~G~k~-~l~~g~~~~~~~~~~~-~~~~------~~~li~~r~  119 (445)
                      +..+++....+.+..    .-++..++.|.++|    |+|||| -+++|....++..... ..|+      +.-+++..+
T Consensus        35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~  114 (473)
T PRK10429         35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI  114 (473)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            335666655555444    34677888999999    569855 5555665555544433 2232      112334556


Q ss_pred             HhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcch
Q 013318          120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTT  199 (445)
Q Consensus       120 l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~  199 (445)
                      +.+++.+...+...+..++.++         +++||.+..++-..+.++|..+++.+...+....+.    .....+|+ 
T Consensus       115 l~~~~~t~~~ip~~al~~~lt~---------~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~----~~~~~g~~-  180 (473)
T PRK10429        115 LWGMTYTIMDIPFWSLVPTLTL---------DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG----GDRGFGFQ-  180 (473)
T ss_pred             HHHHHHHHHcchHHhhhHHhCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CchhhhHH-
Confidence            6677777777777777777763         467899988876666667665555443322111110    00011232 


Q ss_pred             hHHHHHHHHHHHHHHHHH-hccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhh
Q 013318          200 LLFIVFLGVITLGTILMC-FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEF  278 (445)
Q Consensus       200 ~~~~i~~~l~~~~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~  278 (445)
                      ....+.+++..+..+..+ ..||+.+.++++.++   +++.+.++.+   ..++|||.++.++...+......... ..+
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~---~~~~~n~~~~~ll~~~~~~~~~~~~~-~~~  253 (473)
T PRK10429        181 MFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE---GSHLTLKDIV---ALIYKNDQLSCLLGMALAYNIASNII-NGF  253 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcCceecCCcccccccc---ccCCCHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHH-hhh
Confidence            222333333333332222 244432111111000   0112233322   23457887766554433333322222 122


Q ss_pred             cccccccccc-cchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHh-hccCCCCccchhHHHH
Q 013318          279 TKEIVTPALG-VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPLI  356 (445)
Q Consensus       279 ~~~~~~~~~~-~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  356 (445)
                      ..++.....+ .+..+.+....+++.+++.++.+++.||+|+|+.+ ..+.++..++.+..+. .+.+...   ....++
T Consensus       254 ~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i  329 (473)
T PRK10429        254 AIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW-AGASIFPVLSCGVLLLMGLAAPHN---ALLIVI  329 (473)
T ss_pred             eeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHHHHHHhccCchh---HHHHHH
Confidence            2222211122 23455666677788899999999999999988754 4555443333221111 1121211   234555


Q ss_pred             HHHHHhhhhhhhhhhhhHHHHhhccCC-----c--hh-hHHHHHHHHHHHHHHHH
Q 013318          357 MAALLGIGDGVLNTQLSALLGILFKHD-----T--EG-AFAQLKVWQCASIAVVF  403 (445)
Q Consensus       357 ~~~l~G~~~~~~~~~~~~~l~~~~~~~-----~--~~-a~~~~~~~~~~g~~ig~  403 (445)
                      ..++.|++.+..++..+++++|..+.+     +  ++ .+|...+.+-+|.+++.
T Consensus       330 ~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        330 AGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence            667788888888888899999986522     2  22 46777777766665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.63  E-value=7.5e-20  Score=185.98  Aligned_cols=341  Identities=15%  Similarity=0.122  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhc---chhhHHhHHHHhhhhhHHhhhhhhhHHHHh
Q 013318           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP---SWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (445)
Q Consensus        64 ~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~---~~~~li~~r~l~Gig~g~~~~~~~~~i~~~  139 (445)
                      ..+..+....++++++|.+.||+|||+++.++..+..+..+.. +.+   ++..+.++|+++|+|.|...+....|+.|.
T Consensus        51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~  130 (451)
T PF00083_consen   51 LTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEI  130 (451)
T ss_pred             HHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455666777899999999999999999999998877766654 566   899999999999999999999999999999


Q ss_pred             hhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q 013318          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFL  219 (445)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l  219 (445)
                      .          |+++||+..++.+....+|..++..++.......        +.++||. .+..-.+..++..+...++
T Consensus       131 ~----------~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~--------~~~~Wr~-~~~~~~~~~l~~~~~~~~~  191 (451)
T PF00083_consen  131 A----------PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS--------DNWGWRI-LLIFGAIPSLLVLLLRFFL  191 (451)
T ss_pred             c----------cccccccccccccccccccccccccccccccccc--------ccccccc-ccccccccccccccccccc
Confidence            8          5788999999988888888887777765542221        1245874 2222222222223333567


Q ss_pred             cCCcc----cCccccccc---c-------hhhhhHHHHHH-------HHHHHhhccch----hHHHHHHHHHHHHHHHHH
Q 013318          220 RKEED----KGEKETADA---S-------VNFYSYLVSLS-------KSITTLLADVR----MLLIIPLFAYSGLQQAFV  274 (445)
Q Consensus       220 ~~~~~----~~~~~~~~~---~-------~~~~~~~~~~~-------~~~~~~l~~~~----~~~l~~~~~~~g~~~~f~  274 (445)
                      ||+++    +.++|+.++   +       ..+..+.+++.       ....+++++++    ......+.....+.....
T Consensus       192 pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~  271 (451)
T PF00083_consen  192 PESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINF  271 (451)
T ss_pred             ccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccc
Confidence            77543    111110000   0       00000000000       01223344432    222211122222211112


Q ss_pred             Hhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH--hhccCCCC-ccc
Q 013318          275 WAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL--INYSVTSG-VLG  350 (445)
Q Consensus       275 ~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~--~~~~~~~~-~~~  350 (445)
                      ...+.+.+. ..+.+..  -......++...++.++...+.||+|||+.. +.+.....++.+...  .....+.+ ...
T Consensus       272 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T PF00083_consen  272 IFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLL-IIGLLLMAICSLILGIIFFLGVSSSSWWS  348 (451)
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            223333221 1222222  1223345566667777778999999999744 455555444332111  11111111 000


Q ss_pred             hhHHHHHHHHHhh-hhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHH
Q 013318          351 TLYPLIMAALLGI-GDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVGICV  424 (445)
Q Consensus       351 ~~~~~~~~~l~G~-~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~~~i~~~~~~~  424 (445)
                       ....+...++.. ....+.+..+.+.+|++|.+.+ .+.++......++..++..+.+..    +....+.+.++++++
T Consensus       349 -~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  349 -ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             -cccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence             111122222222 2224556667888999998754 466666565556666555444432    223445555555555


Q ss_pred             HHH
Q 013318          425 ALV  427 (445)
Q Consensus       425 ~~~  427 (445)
                      +.+
T Consensus       428 ~~i  430 (451)
T PF00083_consen  428 AII  430 (451)
T ss_pred             HHh
Confidence            544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.59  E-value=3e-15  Score=144.63  Aligned_cols=107  Identities=16%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hh-----c--chhhHHhHHHHhhhhhHHhhhhhhhHH
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF-----P--SWYTMVPASLYLGFAASIIWVGEGTYL  136 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~-----~--~~~~li~~r~l~Gig~g~~~~~~~~~i  136 (445)
                      .++-+....++|++.|++.||+|||++....+++..+.++.+ +.     +  -...+...|+++|+|.|+-+|...++.
T Consensus        90 n~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~  169 (538)
T KOG0252|consen   90 NAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIM  169 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHh
Confidence            344455667899999999999999999999998877766543 21     1  145677899999999999999999999


Q ss_pred             HHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                      +|.++          +++||...+..++....|...|..++..+.
T Consensus       170 SE~an----------~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~  204 (538)
T KOG0252|consen  170 SESAN----------KKTRGAFIAAVFAMQGFGILAGGIVALIVS  204 (538)
T ss_pred             hhhhh----------hccccceeEEEEEecchhHhhccHHHHHHH
Confidence            98884          578999999999888888888887765443

>PRK09848 glucuronide transporter; Provisional

Probab=99.59  E-value=1.3e-12  Score=132.86  Aligned_cols=311  Identities=14%  Similarity=0.031  Sum_probs=161.4

Q ss_pred             hhccCCCCchHHHHHHHH----HHHHhhhhHHHHHHHh----Ccchhh-hhhhHHHHHHHH-Hhhhc-----c--hhhHH
Q 013318           53 TVNTEGNLGTISLGILYT----SFTCFSLVASLVVRVL----GSKNAL-ILGTTGYWLFVA-ANLFP-----S--WYTMV  115 (445)
Q Consensus        53 ~i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~----G~k~~l-~~g~~~~~~~~~-~~~~~-----~--~~~li  115 (445)
                      .+.+..+++....+.+..    ..++..++.|+++||.    ||||.. .++.+...+... .+..+     +  ..-.+
T Consensus        34 y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (448)
T PRK09848         34 YYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAY  113 (448)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHH
Confidence            333445666655555443    4567888999999996    666644 555543333222 22111     1  11123


Q ss_pred             hHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHH-----HHhhhhhhHHHHHhhcCccccccc
Q 013318          116 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF-----ASHQFVGNLITLAVLKDDKVCAAL  190 (445)
Q Consensus       116 ~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~-----~lg~~iG~li~~~l~~~~~~~~~~  190 (445)
                      ..-.+.+++.+...+...+...+...         +++||.+..++-....     .++..+||++.........     
T Consensus       114 ~~~~~~~~~~~~~~~~~~al~~~~~~---------~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~-----  179 (448)
T PRK09848        114 LTYMGLGLCYSLVNIPYGSLATAMTQ---------QPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMV-----  179 (448)
T ss_pred             HHHHHHHHHHHHhcccHhhhhhhhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-----
Confidence            34567788888877766666555542         3567887766543322     2344445554432211000     


Q ss_pred             cCCCCCcchhHHHHHHHHHHHHHHHHH----hccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHH
Q 013318          191 LGGSTSGTTLLFIVFLGVITLGTILMC----FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAY  266 (445)
Q Consensus       191 ~~~~~~w~~~~~~i~~~l~~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  266 (445)
                          .+|.    ....++.+++.++.+    ..||+.+  +++  +     +.+.++   ...+++|||+++......+.
T Consensus       180 ----~~~~----~~~~~~~v~~~~~~~~~~~~~~e~~~--~~~--~-----~~~~~~---~~~~l~~n~~f~~~~~~~~~  239 (448)
T PRK09848        180 ----SVYH----FWTIVLAIAGMVLYFICFKSTRENVV--RIV--A-----QPSLKI---SLQTLKRNRPLFMLCIGALC  239 (448)
T ss_pred             ----hhHH----HHHHHHHHHHHHHHHHHHcCcEeccC--CCc--c-----CCCHHH---HHHHHhCCchHHHHHHHHHH
Confidence                0111    111222223332221    1233211  111  0     111222   24457889998765544333


Q ss_pred             HHHHHHHHHhhhcccccccccccc-hh-HHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccC
Q 013318          267 SGLQQAFVWAEFTKEIVTPALGVS-GV-GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV  344 (445)
Q Consensus       267 ~g~~~~f~~~~~~~~~~~~~~~~~-~~-g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~  344 (445)
                      ............+ ++....++.+ .. ++......++.+++.++.+++.||+++|+. +..|.++..++.+.  +.+.+
T Consensus       240 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~-~~~g~~~~~i~~~~--~~~~~  315 (448)
T PRK09848        240 VLISTFAVSASSL-FYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT-FLIGALLGTCGYLL--FFWVS  315 (448)
T ss_pred             HHHHHHHHhhhhe-eeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHH--HHHcC
Confidence            2222111111222 2222223332 23 333344456778889999999999998874 45676665555432  22332


Q ss_pred             CCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc--------hhhHHHHHHHHHHHHHHHHH
Q 013318          345 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT--------EGAFAQLKVWQCASIAVVFF  404 (445)
Q Consensus       345 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~--------~~a~~~~~~~~~~g~~ig~~  404 (445)
                      +.+   ....++..++.|+|.+...+..+++.+|..|+++        +..+|.+++.+.+|.++|..
T Consensus       316 ~~~---~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~  380 (448)
T PRK09848        316 VWS---LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS  380 (448)
T ss_pred             chh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence            222   2334455667899999888888999988876431        33567888888887766543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.57  E-value=1.4e-12  Score=126.34  Aligned_cols=305  Identities=14%  Similarity=0.024  Sum_probs=165.1

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh---hhc----chh--hHHhHHHHhhhhhHHhhhhhhhHHHHhhh
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN---LFP----SWY--TMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~---~~~----~~~--~li~~r~l~Gig~g~~~~~~~~~i~~~~~  141 (445)
                      ......+.+-|+.||+|-|..+.++...-++....-   ..|    .+.  ....+..+.+.++-.+......+...|+ 
T Consensus        91 v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF-  169 (480)
T KOG2563|consen   91 VSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF-  169 (480)
T ss_pred             HHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC-
Confidence            344456677799999999999999998777665542   122    222  3334445555444433333233344444 


Q ss_pred             hhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchh-HHHHHHHHHHHHHHHHHhcc
Q 013318          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTL-LFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~-~~~i~~~l~~~~~~l~~~l~  220 (445)
                               ++++|..+..+-.....+|.++|.++...+..+..+     ....+|... ++....++..+.+++..+.+
T Consensus       170 ---------~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~-----~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~  235 (480)
T KOG2563|consen  170 ---------PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKD-----SEDNSWLFFTLFLGVECLAALLLALVLFVF  235 (480)
T ss_pred             ---------CcchhhhhhhHHHhcchHHHHHHhhccceecCCCCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     688999998887777789999999888777655421     122455431 23333333433333333333


Q ss_pred             C--CcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH--HhhhcccccccccccchhHHHH
Q 013318          221 K--EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFV--WAEFTKEIVTPALGVSGVGGAM  296 (445)
Q Consensus       221 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~--~~~~~~~~~~~~~~~~~~g~~~  296 (445)
                      +  |+.++...  . ......+   -.+.+.+.+||+++..+.+.+- .|+. .|+  .+.+...+...+++....|++.
T Consensus       236 ~~~P~tPps~s--~-~~~~~~~---f~~si~~~~~n~~F~il~~~yg-i~~g-~F~~l~~~l~~~l~~sgY~~~~aG~ig  307 (480)
T KOG2563|consen  236 TKKPPTPPSAS--Q-AALQDAS---FPKSIKSCFKNRQFIILAICYG-IGLG-LFNSLSTLLNLALCPSGYEGVFAGYIG  307 (480)
T ss_pred             CCCCCCCCchh--H-hhhhcCc---HHHHHHHHHcCccHHHHHHHHh-hhHH-HHHHHHHHhhhccccccCCccccchhH
Confidence            2  22212111  0 0000111   2346778899999987764321 1111 122  1111111212333334677888


Q ss_pred             HHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHH
Q 013318          297 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALL  376 (445)
Q Consensus       297 ~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l  376 (445)
                      ...-++.++++...|.+.||.+.-+...........++-. .+.........  ..+++....++|++.....|.-..+-
T Consensus       308 ~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~-~l~~~t~~~~~--~viv~~t~~~~g~~~~~~~Pig~Elg  384 (480)
T KOG2563|consen  308 ALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL-MLLTCTLFLGD--SVIVFTTCGLLGFFGTGYLPIGFELG  384 (480)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHhhccCCc--eEehhhhHHHHHHhhcCCCCcceeee
Confidence            8888889999999999999975433222232233222211 11111211111  24567777788888877777766665


Q ss_pred             Hhh-ccCCchhhHHHHH-HHHHHHHHH
Q 013318          377 GIL-FKHDTEGAFAQLK-VWQCASIAV  401 (445)
Q Consensus       377 ~~~-~~~~~~~a~~~~~-~~~~~g~~i  401 (445)
                      .|. ||...++..|+.+ +.|..+...
T Consensus       385 vE~TyPv~E~tSsGll~~~gq~f~~~~  411 (480)
T KOG2563|consen  385 VETTYPVAEGTSSGLLNLSGQIFGVIL  411 (480)
T ss_pred             eeeccccCCcccceeEEeehhHHHHHH
Confidence            555 5655555556433 333444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.54  E-value=5.9e-11  Score=120.50  Aligned_cols=357  Identities=8%  Similarity=-0.019  Sum_probs=188.0

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhhhc-cCCCCchHHHHHHH----HHHHHhhhhHHHHHHHh-CcchhhhhhhHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVN-TEGNLGTISLGILY----TSFTCFSLVASLVVRVL-GSKNALILGTTGY   99 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~g~~~~~~~~----~~~ai~~l~~g~l~dr~-G~k~~l~~g~~~~   99 (445)
                      .++.++.+....+....+++....+.+... ++.+++....+..+    ....++++++|+++||+ ||||++++|.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            455566666666666666666665555443 33455554433333    34456778999999999 9999999999877


Q ss_pred             HHHHHHh-hhc-chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHH
Q 013318          100 WLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (445)
Q Consensus       100 ~~~~~~~-~~~-~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~  177 (445)
                      .+..... ..+ +...++..-.+.++|.|...+...+++++..|+        ++++|...+++++...++|..+||.+.
T Consensus        87 ~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~--------~~~~R~sgf~i~Y~~~nlG~~iap~l~  158 (493)
T PRK15462         87 AIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEP--------TDPRRDGGFSLMYAAGNVGSIIAPIAC  158 (493)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCC--------CCccccceehHHHHHHHHHHHHHHHHH
Confidence            6654332 212 212233333455566777667677888888742        234799999999999999999999998


Q ss_pred             HHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCC-ccc---Ccccccccchhh----------------
Q 013318          178 LAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKE-EDK---GEKETADASVNF----------------  237 (445)
Q Consensus       178 ~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~-~~~---~~~~~~~~~~~~----------------  237 (445)
                      ..+...           .||+. .|.+.++.++++.+..++.++. ++.   ++++.++++...                
T Consensus       159 g~L~~~-----------~Gw~~-~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (493)
T PRK15462        159 GYAQEE-----------YSWAM-GFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPAL  226 (493)
T ss_pred             HHHHhh-----------hChHH-HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            877533           35654 3444333334444433332211 110   000000000000                


Q ss_pred             -hhHHHHHHHH----------------HH-Hhh--cc-chhHHHHHHHH-----HHHHHHHHH-Hhhhcccccccc-ccc
Q 013318          238 -YSYLVSLSKS----------------IT-TLL--AD-VRMLLIIPLFA-----YSGLQQAFV-WAEFTKEIVTPA-LGV  289 (445)
Q Consensus       238 -~~~~~~~~~~----------------~~-~~l--~~-~~~~~l~~~~~-----~~g~~~~f~-~~~~~~~~~~~~-~~~  289 (445)
                       .....+....                .. +..  .+ +|+....++++     +..+++..- .+.|.....++. .|.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~  306 (493)
T PRK15462        227 ITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGY  306 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcce
Confidence             0000000000                00 001  01 24433333322     222333211 123332222222 122


Q ss_pred             c-hhHHHHHHHHHHHHHHHhhhhccccCCCC--c---cc-hHhHHHHHHHHHHHHHHh--hccCCCCccchhHHHHHHHH
Q 013318          290 S-GVGGAMAVYGAFDAICSLAAGRLTTGLPS--I---TF-IVSGGAIAQVVVFLWILI--NYSVTSGVLGTLYPLIMAAL  360 (445)
Q Consensus       290 ~-~~g~~~~~~~i~~~~g~~~~G~l~d~~g~--~---~~-~i~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l  360 (445)
                      + ......+...+..++.+++..++-.|..+  |   .+ -...|+++..++++....  ...++.....+..+....++
T Consensus       307 ~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~  386 (493)
T PRK15462        307 TVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAV  386 (493)
T ss_pred             eeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            2 24455677777778777776655333311  1   01 135677666666532211  11111111113346677888


Q ss_pred             HhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHH-HHHHHHHH
Q 013318          361 LGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVW-QCASIAVV  402 (445)
Q Consensus       361 ~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~-~~~g~~ig  402 (445)
                      +++|+-+..|.-.+.++++.|++.+ ..+|.+.+. ..+|..++
T Consensus       387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~  430 (493)
T PRK15462        387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLA  430 (493)
T ss_pred             HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998754 467876442 24554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.54  E-value=7.8e-13  Score=133.66  Aligned_cols=314  Identities=13%  Similarity=0.083  Sum_probs=182.3

Q ss_pred             cCCCCchHHHHHHHH----HHHHhhhhHHHHHH----HhCcchhhh-hhhHHHHHHHHHhh-h-c-ch------hhHHhH
Q 013318           56 TEGNLGTISLGILYT----SFTCFSLVASLVVR----VLGSKNALI-LGTTGYWLFVAANL-F-P-SW------YTMVPA  117 (445)
Q Consensus        56 ~~~~~g~~~~~~~~~----~~ai~~l~~g~l~d----r~G~k~~l~-~g~~~~~~~~~~~~-~-~-~~------~~li~~  117 (445)
                      +..+++....+.+..    ..++..++.|.++|    |+||||..+ +|....++.....+ . | ++      .-+.+.
T Consensus        30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~  109 (428)
T PF13347_consen   30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF  109 (428)
T ss_pred             HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence            335666665555544    34667788999999    899777665 45555555444433 3 3 11      113445


Q ss_pred             HHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCC-CC
Q 013318          118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGS-TS  196 (445)
Q Consensus       118 r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~-~~  196 (445)
                      -++..++.........++..+.++         +++||.+..+.-..+..+|..+.+.+...+....+.     ... .+
T Consensus       110 ~~l~~~~~t~~~i~~~al~~~lt~---------~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~-----~~~~~~  175 (428)
T PF13347_consen  110 YILFDIAYTFVQIPYNALIPELTP---------DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGG-----GDTSNG  175 (428)
T ss_pred             HHHHHHhhhhccCchhhcCccccc---------cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----CccchH
Confidence            566677777777777777777764         357899998887777777775555444443322221     001 14


Q ss_pred             cchhHHHHHHHHHHHHHHHH-HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 013318          197 GTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW  275 (445)
Q Consensus       197 w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~  275 (445)
                      |+. ...+.+++..+..++. +.+||++++.+++  +    ++.+.++   ..++.+|||+++.+....++..+......
T Consensus       176 ~~~-~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~--~----~~~~~~~---~~~~~~~nr~~~~l~~~~~~~~~~~~~~~  245 (428)
T PF13347_consen  176 YRW-MALVLAIVGLVFFLITFFFVKERSVEVTEQ--E----KKISLRD---SLRSLFRNRPFRILLLAFFLQWLAFALMN  245 (428)
T ss_pred             HHH-HHHHHHHHHHHHhhhhhheeeecccccccc--c----ccccccc---chhhhcccchHHHHHHHHHHHHhhhhhhh
Confidence            543 3334444444444333 3455511111111  0    1112222   23456778888766555554433322221


Q ss_pred             ---hhhccccccccccc-chhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccch
Q 013318          276 ---AEFTKEIVTPALGV-SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGT  351 (445)
Q Consensus       276 ---~~~~~~~~~~~~~~-~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  351 (445)
                         .+|.++.    ++. +..+.......++.+++.+++++++||+|+|+. ...+.++.+++.++.  .+.+..+   .
T Consensus       246 ~~~~y~~~~v----l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~-~~~~~~~~~~~~~~~--~~~~~~~---~  315 (428)
T PF13347_consen  246 TFLPYYFTYV----LGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV-YIIGLLLAALGFLLL--FFLGPGS---P  315 (428)
T ss_pred             hHHHHHHHHH----hcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceee-hhhhHHHHHHHHHHH--HHHHhhh---H
Confidence               2222222    222 345666677888899999999999999999884 456666665554321  2222111   2


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-------hh-hHHHHHHHHHHHHHHHH
Q 013318          352 LYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-------EG-AFAQLKVWQCASIAVVF  403 (445)
Q Consensus       352 ~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-------~~-a~~~~~~~~~~g~~ig~  403 (445)
                      ...++..++.|++.+..+...+++++|..++++       ++ .+|++++.+-++.+++.
T Consensus       316 ~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~  375 (428)
T PF13347_consen  316 WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAG  375 (428)
T ss_pred             HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence            567788888999999999999999999886431       12 46777777766655543

>PRK11462 putative transporter; Provisional

Probab=99.51  E-value=5.2e-11  Score=121.39  Aligned_cols=309  Identities=10%  Similarity=0.027  Sum_probs=162.2

Q ss_pred             CCCCchHHHHHHHH----HHHHhhhhHHHHHHH----hCcchhhh-hhhHHHHHHHHHh-hhcc------hhhHHhHHHH
Q 013318           57 EGNLGTISLGILYT----SFTCFSLVASLVVRV----LGSKNALI-LGTTGYWLFVAAN-LFPS------WYTMVPASLY  120 (445)
Q Consensus        57 ~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr----~G~k~~l~-~g~~~~~~~~~~~-~~~~------~~~li~~r~l  120 (445)
                      ..+++....+.++.    .-++..++.|.++||    +||||..+ +|....++..... ..|+      ..-+.+...+
T Consensus        39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~  118 (460)
T PRK11462         39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL  118 (460)
T ss_pred             hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence            34666555454444    447888999999996    68876655 4555555544443 3342      1123344556


Q ss_pred             hhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchh
Q 013318          121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTL  200 (445)
Q Consensus       121 ~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~  200 (445)
                      ..++.......-.+..++.++         +++||.+..++...+..+|..+++.+...+....+. +   ....+|+. 
T Consensus       119 ~~~~~t~~~ipy~al~~~lt~---------d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~-~---~~~~g~~~-  184 (460)
T PRK11462        119 LTLLYTVVNIPYCALGGVITN---------DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG-D---NKPLGFQG-  184 (460)
T ss_pred             HHHHHHHHhccHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C---chhhhHHH-
Confidence            677777777777777777764         478999999998888888877776664433322110 0   00123432 


Q ss_pred             HHHHHHHHHHHHHHHHHh-ccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH---HHh
Q 013318          201 LFIVFLGVITLGTILMCF-LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAF---VWA  276 (445)
Q Consensus       201 ~~~i~~~l~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f---~~~  276 (445)
                      ...+++++.++...+.++ .+|+++.+ ++        +.+.++   .....+|||.++.+....+........   ...
T Consensus       185 ~~~i~~ii~~i~~~i~~~~~kE~~~~~-~~--------~~~~~~---~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~  252 (460)
T PRK11462        185 GIAVLSVVAFMMLAFCFFTTKERVEAP-PT--------TTSMRE---DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMM  252 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhcceeccCCC-cc--------CCCHHH---HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            233333333333322222 23322111 10        111232   233457787776554332222221111   112


Q ss_pred             hhccccccccccc-chhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHH
Q 013318          277 EFTKEIVTPALGV-SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPL  355 (445)
Q Consensus       277 ~~~~~~~~~~~~~-~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (445)
                      .|.+++    ++. +..+.++..++++.+++.++.+++.||+++|+.. ..+..+..+.... +...++.+    ....+
T Consensus       253 y~~~y~----~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~-~~~~~~~~~~~~~-~~~~~~~~----~~~~~  322 (460)
T PRK11462        253 YYVTWI----LGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF-WWTNALLAVISLA-MFFVPMQA----SITMF  322 (460)
T ss_pred             hhhhhh----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHH-HHHhchhH----HHHHH
Confidence            333333    222 2334556678888999999999999999887643 3232222221111 11222211    12234


Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHhhccCC------c-hh-hHHHHHHHHHHHHHH
Q 013318          356 IMAALLGIGDGVLNTQLSALLGILFKHD------T-EG-AFAQLKVWQCASIAV  401 (445)
Q Consensus       356 ~~~~l~G~~~~~~~~~~~~~l~~~~~~~------~-~~-a~~~~~~~~~~g~~i  401 (445)
                      +..++.|++.+...+..+++++|..+.+      + +. .++...+.+-+|.++
T Consensus       323 ~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~al  376 (460)
T PRK11462        323 VFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAF  376 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            4455677777777777788888876521      2 22 255555555555444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.40  E-value=1.4e-10  Score=112.12  Aligned_cols=339  Identities=13%  Similarity=0.097  Sum_probs=193.4

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHH-HHHHh-h-hc--chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhh
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAAN-L-FP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~-~~~~~-~-~~--~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~  145 (445)
                      ..++-.++.|.++|..|+||-.+--.....+ .++.. + .+  ++...++.-++..++.....+-.++++.+..+    
T Consensus        70 lia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~----  145 (438)
T COG2270          70 LIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTT----  145 (438)
T ss_pred             HHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcC----
Confidence            4566778899999999988876555444333 33332 2 33  45555666777888887777777888888874    


Q ss_pred             ccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccccccc--------CCCCCcchhHHHHHHHHHHHH-HHHH
Q 013318          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALL--------GGSTSGTTLLFIVFLGVITLG-TILM  216 (445)
Q Consensus       146 ~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~--------~~~~~w~~~~~~i~~~l~~~~-~~l~  216 (445)
                            +++.++..++-|..-.+|.++--.+........++.+.+.        ++.. - +..+.+.++..++. +.+.
T Consensus       146 ------k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~-ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         146 ------KDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-V-RITGLLAALWWLLFALPMI  217 (438)
T ss_pred             ------ccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-c-hhHHHHHHHHHHHHHhHHH
Confidence                  4566666666666555555444333211111111000000        0111 1 22233322222222 2233


Q ss_pred             HhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHH-HHHHHH-HHHHHHHH-HhhhcccccccccccchhH
Q 013318          217 CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI-IPLFAY-SGLQQAFV-WAEFTKEIVTPALGVSGVG  293 (445)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~~~~-~g~~~~f~-~~~~~~~~~~~~~~~~~~g  293 (445)
                      +.++++++.+.+.    ++...+..++.....++..+++.+.+. +--+++ -|....+- .+.|...  .-+++..++.
T Consensus       218 ~~v~~~~~~~~~~----~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~--~~gls~~~ll  291 (438)
T COG2270         218 LNVHDAEKISSPP----PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAA--DLGLSSTELL  291 (438)
T ss_pred             hcccccccccccc----hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHH--HcCccHHHHH
Confidence            4455544321111    111223444444444455555544332 222333 23332221 2333321  1234445677


Q ss_pred             HHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhh
Q 013318          294 GAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLS  373 (445)
Q Consensus       294 ~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  373 (445)
                      ++.....+.+++|.++.|++.||++.|+ ++..+.++.....+...  +...+     .-.+++..+.|+..+..+...-
T Consensus       292 l~g~~~~vvA~lg~ii~g~Ld~rfg~k~-vl~~~lvi~~~~~~~~~--~~~~~-----~~f~i~gll~g~s~G~~qA~SR  363 (438)
T COG2270         292 LIGIALSVVAALGAIIAGFLDERFGSKP-VLMIGLVILSIAALYLI--FLEGE-----LDFWILGLLVGTSLGGAQASSR  363 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCce-eehHHHHHHHHHHHHHH--Hcccc-----HHHHHHHHHHHHhcchHHHHHH
Confidence            7778888999999999999999999986 45566665443322222  22121     3466777889999999999999


Q ss_pred             HHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          374 ALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIGP-----YISLQAMLIVMVVGICVALVGILFLTIQ  435 (445)
Q Consensus       374 ~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~  435 (445)
                      ++++++.|+++++ .||+|+...-.++..|++.-.     ..+....+..+.+++.++.+.++++..+
T Consensus       364 Sy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         364 SYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            9999999998775 689999988777777664432     2355666777777778888777655433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.38  E-value=5.8e-10  Score=110.93  Aligned_cols=316  Identities=11%  Similarity=0.083  Sum_probs=175.9

Q ss_pred             cCCCCchHHHHHHHH----HHHHhhhhHHHHHHH----hCcch-hhhhhhHHHHHHHHHh-hhcc------hhhHHhHHH
Q 013318           56 TEGNLGTISLGILYT----SFTCFSLVASLVVRV----LGSKN-ALILGTTGYWLFVAAN-LFPS------WYTMVPASL  119 (445)
Q Consensus        56 ~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr----~G~k~-~l~~g~~~~~~~~~~~-~~~~------~~~li~~r~  119 (445)
                      +..+++....+.++.    .-++.-++.|.++||    +||+| -+++|.+.+++...+. ..|+      +.-.++.-.
T Consensus        41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~  120 (467)
T COG2211          41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM  120 (467)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence            346777766666554    347788899999995    77665 4555656677665554 4442      223335678


Q ss_pred             HhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcch
Q 013318          120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTT  199 (445)
Q Consensus       120 l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~  199 (445)
                      +.|++...+...-.+..++..+         +++||.+..+.-+.+.++|..+-..+...+....+..    +...||+ 
T Consensus       121 l~~l~YT~vniPy~al~~~iT~---------d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~----~~~~g~~-  186 (467)
T COG2211         121 LLGLGYTLVNIPYGALGPEITQ---------DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG----DKALGYQ-  186 (467)
T ss_pred             HHHHHHHheeCchhhcchhhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----cchhhHH-
Confidence            8888888888777778887774         4789999888877777777544433332222221110    0123443 


Q ss_pred             hHHHHHHHHHHHHHHHHHh-ccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH---
Q 013318          200 LLFIVFLGVITLGTILMCF-LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW---  275 (445)
Q Consensus       200 ~~~~i~~~l~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~---  275 (445)
                      ...++++++..+..+.+++ ++|+..+..+.    +...+.+.++   .....+|||.++.+....++.........   
T Consensus       187 ~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~----~~~~~~~~~~---~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~  259 (467)
T COG2211         187 GTALVLGVIGVILLLFCFFNVKERVVETQPT----KTGVKLKLKD---SFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIM  259 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCccccC----cccccccHHH---HHHHHHccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            2222223322222222222 44443211111    0001112222   22346778887665543333222111111   


Q ss_pred             hhhcccccccccccc--hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhH
Q 013318          276 AEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLY  353 (445)
Q Consensus       276 ~~~~~~~~~~~~~~~--~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (445)
                      .+|.++    .+|..  ...........+.+++.++..++.+|+|+|+. ...+.++..++.+.  +.+.+...   ..+
T Consensus       260 ~yy~~y----~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~-~~~~~~~~~i~~~~--~~f~~~~~---~~l  329 (467)
T COG2211         260 VYYVTY----VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKL-FLIGLLLLAVGYLL--LYFTPAGS---VVL  329 (467)
T ss_pred             heeEEE----EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHH-HHHHHHHHHHHHHH--HHhhcCcc---hHH
Confidence            223322    23332  34455666777777778999999999998874 45666666655432  22333222   245


Q ss_pred             HHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-------hh-hHHHHHHHHHHHHHHH
Q 013318          354 PLIMAALLGIGDGVLNTQLSALLGILFKHDT-------EG-AFAQLKVWQCASIAVV  402 (445)
Q Consensus       354 ~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-------~~-a~~~~~~~~~~g~~ig  402 (445)
                      .++..++.+++.+..++..+++++|..+.++       ++ .+|.+.+++=+|.+++
T Consensus       330 ~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala  386 (467)
T COG2211         330 IVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALA  386 (467)
T ss_pred             HHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence            5666688889999999999999988764221       12 3676666665555443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.38  E-value=1.4e-09  Score=107.40  Aligned_cols=399  Identities=12%  Similarity=0.041  Sum_probs=224.4

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhh-hhhccCCC----CchHHHHHHHHHH----HHhhhhHHHHHHH-hCcchhhhh
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLE-TTVNTEGN----LGTISLGILYTSF----TCFSLVASLVVRV-LGSKNALIL   94 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~----~g~~~~~~~~~~~----ai~~l~~g~l~dr-~G~k~~l~~   94 (445)
                      +..|....+...=++.-.+|++++.+. -.+..+.+    ++......++..|    -+..++.|+++|| +|+|++++.
T Consensus        18 ~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~l   97 (498)
T COG3104          18 GQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVL   97 (498)
T ss_pred             CCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            345666666667788888888776432 23322222    3333322333333    2467789999998 899999999


Q ss_pred             hhHHHHHHHHHhhh---cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhh
Q 013318           95 GTTGYWLFVAANLF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQF  171 (445)
Q Consensus        95 g~~~~~~~~~~~~~---~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~  171 (445)
                      |.+++.+..+....   .+...++++=++.++|.|.+=+...+++.+..+++        +.||-..+++++...++|..
T Consensus        98 Gail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~--------DprrD~gFt~fY~~iNiGsl  169 (498)
T COG3104          98 GAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD--------DPRRDGGFTLFYMGINIGSL  169 (498)
T ss_pred             HHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCC--------CcccCCCccEEEEEeehHHH
Confidence            99988876655432   35667777888888999999988889999988652        23466778888888899999


Q ss_pred             hhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc--------cCcccccccch--------
Q 013318          172 VGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED--------KGEKETADASV--------  235 (445)
Q Consensus       172 iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~--------~~~~~~~~~~~--------  235 (445)
                      ++|++...+..+.           +|. ..|...++-+..+++..++.|....        .+.+.....+.        
T Consensus       170 ~~p~i~~~~~~~~-----------g~~-~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (498)
T COG3104         170 IAPIITGLLAINY-----------GWH-VGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMI  237 (498)
T ss_pred             HHHHHHHHHHHhh-----------CHH-HHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHH
Confidence            9998888776443           443 4455555555566655544442111        11100000000        


Q ss_pred             --------hhhhHHH---------HHHHHHHHhh------cc-chhHHHHHHHHHHHH-----HHH-HHHhhhccccccc
Q 013318          236 --------NFYSYLV---------SLSKSITTLL------AD-VRMLLIIPLFAYSGL-----QQA-FVWAEFTKEIVTP  285 (445)
Q Consensus       236 --------~~~~~~~---------~~~~~~~~~l------~~-~~~~~l~~~~~~~g~-----~~~-f~~~~~~~~~~~~  285 (445)
                              ...+...         .......+.+      .+ +|.+..++++...-+     ++. -..+.+.....++
T Consensus       238 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~  317 (498)
T COG3104         238 LAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR  317 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence                    0000000         0000001111      11 234444444333222     221 1112233222223


Q ss_pred             c-cccc-hhHHHHHHHHHHHHHHHhhhhccccCCCC--cc----chHhHHHHHHHHHHHHHHhh--ccCC-CCccchhHH
Q 013318          286 A-LGVS-GVGGAMAVYGAFDAICSLAAGRLTTGLPS--IT----FIVSGGAIAQVVVFLWILIN--YSVT-SGVLGTLYP  354 (445)
Q Consensus       286 ~-~~~~-~~g~~~~~~~i~~~~g~~~~G~l~d~~g~--~~----~~i~~g~~~~~~~~~~~~~~--~~~~-~~~~~~~~~  354 (445)
                      + +|.+ ..+..-++..+..++.+++.-++..|+++  |+    .-..+|..++.++++.....  +..+ .........
T Consensus       318 ~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~l  397 (498)
T COG3104         318 QIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWL  397 (498)
T ss_pred             cccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHH
Confidence            3 3322 24455667777777777766665544322  11    11245555555554321111  2211 111113456


Q ss_pred             HHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhc-------c---hhHHHHHHHHHHHHH
Q 013318          355 LIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP-------Y---ISLQAMLIVMVVGIC  423 (445)
Q Consensus       355 ~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~-------~---~~~~~~~~i~~~~~~  423 (445)
                      ...+++.++|+=+..|+-.+...++.|+.. ..++|++-+.+..|..++-.+++       .   ......+..++...+
T Consensus       398 il~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i  477 (498)
T COG3104         398 VLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAI  477 (498)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHH
Confidence            678889999999999999999999999874 34788877777777776654544       1   123445566666666


Q ss_pred             HHHHHHHHHHHHHHhhhcCC
Q 013318          424 VALVGILFLTIQVEKAFYSP  443 (445)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~  443 (445)
                      ...+..+...++.+|....+
T Consensus       478 ~~~~~~~~~~~~~~r~~~~~  497 (498)
T COG3104         478 VIGILLLLLSPKLNRMMKGV  497 (498)
T ss_pred             HHHHHHHHhhHHHHHhhcCC
Confidence            66666666777777766544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.37  E-value=5.3e-11  Score=112.34  Aligned_cols=330  Identities=11%  Similarity=0.037  Sum_probs=170.9

Q ss_pred             HHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHH-HhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhc
Q 013318           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (445)
Q Consensus        68 ~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~-~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~  146 (445)
                      .+...-+++...|.+.|++||||...+..+.-.++-. +...||+..+++.|.+.|+|.|+ .+...++-.+.-      
T Consensus       122 v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~l------  194 (528)
T KOG0253|consen  122 VFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFL------  194 (528)
T ss_pred             HHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhc------
Confidence            4445667888999999999999999888776555433 45789999999999999999988 333333333444      


Q ss_pred             cCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc-
Q 013318          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK-  225 (445)
Q Consensus       147 ~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~-  225 (445)
                          |...|+.-+=.. +.+..|.++-..++..+...           .|||...+..-..++ +.....++++|+++- 
T Consensus       195 ----p~~~r~~~~V~~-~~waig~v~ea~law~vm~~-----------~gwr~~l~~~~~pl~-~~a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  195 ----PSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-----------FGWRYLLFTSSTPLM-FAARFLVWVYESPRFY  257 (528)
T ss_pred             ----cCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHhHHH-HHHHHHhhcccCcchh
Confidence                344566544433 56678888888888776543           368754443332222 222233567765431 


Q ss_pred             ---Ccccc-------------c----------c--cchhhhh--------HHHHHHHHHHHhhccchhH----HHHHHHH
Q 013318          226 ---GEKET-------------A----------D--ASVNFYS--------YLVSLSKSITTLLADVRML----LIIPLFA  265 (445)
Q Consensus       226 ---~~~~~-------------~----------~--~~~~~~~--------~~~~~~~~~~~~l~~~~~~----~l~~~~~  265 (445)
                         .+++.             .          .  +++++..        ..++.-..+.+++ .|++.    ++....+
T Consensus       258 ~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwf  336 (528)
T KOG0253|consen  258 LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWF  336 (528)
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhc-ChHHHHHHHHHHHHHH
Confidence               11100             0          0  0000000        0000001112222 22221    1221111


Q ss_pred             -----HHHHHH----HHHHhh--------hccccc---ccccccchhHHH-HHHHHHHHHHHHhhhhccccCCCCccchH
Q 013318          266 -----YSGLQQ----AFVWAE--------FTKEIV---TPALGVSGVGGA-MAVYGAFDAICSLAAGRLTTGLPSITFIV  324 (445)
Q Consensus       266 -----~~g~~~----~f~~~~--------~~~~~~---~~~~~~~~~g~~-~~~~~i~~~~g~~~~G~l~d~~g~~~~~i  324 (445)
                           |.|...    -+..+.        +|.+..   .+... +..-+. ...-.+....|.++.+++.||+|||+.+ 
T Consensus       337 gnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s-~~~dYrdllitslaefPGlLIt~~iverlGRKkTM-  414 (528)
T KOG0253|consen  337 GNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLS-VAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTM-  414 (528)
T ss_pred             hhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCcc-chhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHH-
Confidence                 222110    010110        111110   01111 112222 1244566778889999999999999965 


Q ss_pred             hHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHH
Q 013318          325 SGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~  403 (445)
                      ...+++..++.++.+...  +.     ....+..+..-++.++.....|.+..|+||...+ ...|.-....-+|+.+.+
T Consensus       415 al~l~~f~iflfll~~c~--~r-----n~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p  487 (528)
T KOG0253|consen  415 ALSLILFGIFLFLLTTCK--TR-----NAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSP  487 (528)
T ss_pred             HHHHHHHHHHHHHHHHhc--Cc-----chhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhh
Confidence            455555544432211111  21     1222223333344444455778899999998754 455554444445666666


Q ss_pred             Hhhcc--hhHHHHHHHHHHHHHHHHHHHHH
Q 013318          404 FIGPY--ISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       404 ~i~~~--~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      +++-.  .+......+..++++++.++..+
T Consensus       488 ~iA~~~e~s~sl~i~vy~~~~ilagIavcf  517 (528)
T KOG0253|consen  488 VIAMRAELSTSLPIFVYGALFILAGIAVCF  517 (528)
T ss_pred             HHHHHhccceeehHHHHHHHHHHHHHHhee
Confidence            55521  24455566666666766665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.36  E-value=4.5e-09  Score=101.97  Aligned_cols=327  Identities=16%  Similarity=0.089  Sum_probs=182.1

Q ss_pred             HHHhhhhHHHHHHHhC-----cchhhhhhhHHH-HHHH-HH-h----hhc--------ch---hhHHhHHHHhhhhhHHh
Q 013318           72 FTCFSLVASLVVRVLG-----SKNALILGTTGY-WLFV-AA-N----LFP--------SW---YTMVPASLYLGFAASII  128 (445)
Q Consensus        72 ~ai~~l~~g~l~dr~G-----~k~~l~~g~~~~-~~~~-~~-~----~~~--------~~---~~li~~r~l~Gig~g~~  128 (445)
                      .+...+..|+.+|+.+     ||...+++.... .... .+ .    +..        .+   ......-.+.|+|.+..
T Consensus        27 ~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s  106 (403)
T PF03209_consen   27 VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHAS  106 (403)
T ss_pred             HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHh
Confidence            4456678899999999     888777766433 2211 11 1    112        22   12334556778888777


Q ss_pred             hhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHH
Q 013318          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGV  208 (445)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l  208 (445)
                      -++-.++++|.+          +|++|+++.++.|.+.-.|.+++..+...+......           .+ +.-++-..
T Consensus       107 ~T~~lALl~D~~----------~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~-----------~r-L~~v~~~~  164 (403)
T PF03209_consen  107 GTSFLALLADLA----------PEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP-----------ER-LIQVIQGV  164 (403)
T ss_pred             HHHHHHHHHhcC----------CHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH-----------HH-HHHHHHHH
Confidence            777777777776          688999999999999999999999887766644321           12 12222222


Q ss_pred             HHHHHHH---HHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-
Q 013318          209 ITLGTIL---MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-  284 (445)
Q Consensus       209 ~~~~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-  284 (445)
                      .++...+   .++=.|++..++++..+   .+..++++..++   ...+|+...... +.+.+....+.......-|.. 
T Consensus       165 a~i~~~l~~ia~wg~E~r~~~~~~~~~---~~~~~f~~a~~~---~~~~~~a~~f~~-fl~l~t~a~~~QD~iLEPygg~  237 (403)
T PF03209_consen  165 ALIALLLNLIALWGQEPRRSRRAAAAE---RPRPPFREAWRQ---VWASPQARRFFV-FLFLGTLAFFMQDVILEPYGGE  237 (403)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccCCC---CCCccHHHHHHH---HHhCCChhHHHH-HHHHHHHHHHhhHHHcCCchhH
Confidence            3333222   22222332222221111   112334444443   345666544322 222222211221111101111 


Q ss_pred             -cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHh-hccCCCCccchhHHHHHHHHHh
Q 013318          285 -PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPLIMAALLG  362 (445)
Q Consensus       285 -~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G  362 (445)
                       -+++++++.-.....+.+..+|-...|++..|-.++++....|+...+.++.++.. ...++     ...+-...+++|
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~-----~~~~~~~~~l~G  312 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS-----PWLFRPGVFLLG  312 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHH
Confidence             24556677778888888988888888887664333334556777766666543222 22222     245667788999


Q ss_pred             hhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhh--------------cchhHHHHHHHHHHHHHHHHH
Q 013318          363 IGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIG--------------PYISLQAMLIVMVVGICVALV  427 (445)
Q Consensus       363 ~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~--------------~~~~~~~~~~i~~~~~~~~~~  427 (445)
                      ++.+....-.-+..-++.++++. ...|.....|..+..++.+.+              +...|...|.+=+++++++..
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            99999887766777788765544 356776666765554443322              223455556555555555555


Q ss_pred             HHHHH
Q 013318          428 GILFL  432 (445)
Q Consensus       428 ~~~~~  432 (445)
                      ....+
T Consensus       393 ll~~l  397 (403)
T PF03209_consen  393 LLGRL  397 (403)
T ss_pred             HHHHh
Confidence            44443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.17  E-value=6.3e-10  Score=118.34  Aligned_cols=129  Identities=12%  Similarity=0.022  Sum_probs=99.8

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~  149 (445)
                      ...++++++++++||+|||++++++.++.++..+.. +.++...+++.+++.|+..+..|++...+++++.         
T Consensus       607 ~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~---------  677 (742)
T TIGR01299       607 AVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY---------  677 (742)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence            445688899999999999999999988777665543 5566666777888999998899999999999997         


Q ss_pred             CccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 013318          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  222 (445)
Q Consensus       150 ~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~  222 (445)
                       |.++||+++|+..+...+|.++||+++..+....             ....+.+++++.+++.++.+++||+
T Consensus       678 -Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-------------~~~pf~i~a~~lll~~ll~~~LPET  736 (742)
T TIGR01299       678 -PSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-------------KAAPILFASAALACGGLLALKLPDT  736 (742)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHhCCCC
Confidence             4678999999999999999999998887654321             1334555666666666666667654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.15  E-value=3.3e-09  Score=105.83  Aligned_cols=104  Identities=20%  Similarity=0.107  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHhCc-chhhhhhhHHHHHHHHH----hh-hc-chhhHHhHHHHhhhhhHHhhhhhhhHHHH
Q 013318           66 GILYTSFTCFSLVASLVVRVLGS-KNALILGTTGYWLFVAA----NL-FP-SWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (445)
Q Consensus        66 ~~~~~~~ai~~l~~g~l~dr~G~-k~~l~~g~~~~~~~~~~----~~-~~-~~~~li~~r~l~Gig~g~~~~~~~~~i~~  138 (445)
                      +..-...+++++..|+...|.+. |+.++.|.++..+.-..    .. .+ .-+.++++|++.|+|.|..-. .-+|+++
T Consensus        78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~  156 (488)
T KOG2325|consen   78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV-LRAYIAD  156 (488)
T ss_pred             HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH-HHHHHHh
Confidence            33344556677788889999885 77777777654433222    22 23 467778899999999775433 3677777


Q ss_pred             hhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      .+          .+++|-|+++.......+|.++||.+...+
T Consensus       157 ~s----------~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  157 AS----------TVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             cc----------CccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            65          356788888887777788888888776544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.11  E-value=3.2e-09  Score=106.16  Aligned_cols=135  Identities=16%  Similarity=0.096  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhh
Q 013318           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (445)
Q Consensus        66 ~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~  144 (445)
                      +.......++.++.|++.||+|+|+.+..+..+..+.... ...++...+++..++.|++.+..++.....+.+..    
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~----  331 (399)
T PRK05122        256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV----  331 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----
Confidence            3344455678889999999999999998887765554433 24567767777899999999988877666666654    


Q ss_pred             hccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 013318          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  222 (445)
Q Consensus       145 ~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~  222 (445)
                            |+++||+++|++.....+|..+|+.+.+.+..+           .||+ ..+.+.+++.+++.++.++++++
T Consensus       332 ------~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----------~g~~-~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        332 ------PPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-----------FGYP-SIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCHH-HHHHHHHHHHHHHHHHHHHhccc
Confidence                  568899999999999999998888777665432           2343 34555555555665555555543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.10  E-value=7.6e-08  Score=92.07  Aligned_cols=236  Identities=11%  Similarity=0.053  Sum_probs=125.6

Q ss_pred             ccCCCCchHHHHHHHHHH----HHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhhhcchhhHHhHHHHhhhhhHHhhh
Q 013318           55 NTEGNLGTISLGILYTSF----TCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWV  130 (445)
Q Consensus        55 ~~~~~~g~~~~~~~~~~~----ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~~~~~~~li~~r~l~Gig~g~~~~  130 (445)
                      .++.+...-..+.+|...    ++...+.|.+.||+|||+..+..++++.+..+.-..+++..++++|++.|++.++++.
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            345677766666665533    4455678899999999998888877766655444578999999999999999999988


Q ss_pred             hh-hhHHHHhhhhhhhccCCCccchhhhhhhHHH-HHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHH
Q 013318          131 GE-GTYLTAAALSHASNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGV  208 (445)
Q Consensus       131 ~~-~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~-~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l  208 (445)
                      +. .-++.|+-+     ++. |++..+.-++... ....+-.+..++++..+....+         .+ +...|....++
T Consensus       141 ~FEsW~V~Eh~~-----~g~-~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~---------~g-~vaPF~~a~~~  204 (354)
T PF05631_consen  141 AFESWMVHEHNK-----RGF-PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG---------FG-PVAPFDAAIVL  204 (354)
T ss_pred             HHHHHHHHHHHH-----cCC-ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC---------CC-CcchHHHHHHH
Confidence            84 445555532     121 2233333333211 1112223344445544432221         11 12235444444


Q ss_pred             HHHHHHHHHh-ccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHH-HHHHHHHHHHhhhcccccccc
Q 013318          209 ITLGTILMCF-LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA-YSGLQQAFVWAEFTKEIVTPA  286 (445)
Q Consensus       209 ~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~g~~~~f~~~~~~~~~~~~~  286 (445)
                      ..++.++... -+|...++.+.     .+...+.++.   .....+|||++.+..... +-|....|+.-|-| .+...+
T Consensus       205 l~~~~~~I~~~W~ENyg~~~~~-----~~~~~~~~~a---~~~i~~d~ril~LG~~qslFE~smy~FVflWtP-aL~~~~  275 (354)
T PF05631_consen  205 LAVAAVLILKTWPENYGDTSSS-----SSLSGSFREA---WRAILSDPRILLLGLIQSLFEGSMYLFVFLWTP-ALDPDD  275 (354)
T ss_pred             HHHHHHHHHhcccccCCCcccc-----cchHHHHHHH---HHHHHcCchhHHHHHHHHHHHHHHHHheeeeec-eecCCC
Confidence            4444333221 22221111110     0011122222   223456899887754322 22222233322333 221111


Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccC
Q 013318          287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTG  316 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~  316 (445)
                       ..-..|++++.+-++.++|+.++.++..|
T Consensus       276 -~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  276 -EELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence             11257899999999999999999876544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.08  E-value=3.8e-09  Score=106.47  Aligned_cols=136  Identities=15%  Similarity=0.224  Sum_probs=97.7

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h-hc---chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhh
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-FP---SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~-~~---~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~  145 (445)
                      ...++.++.|++.||+|+|+++.++.++..+..... . .+   ++..+++.+++.|++.+...+....++++..     
T Consensus       263 ~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~-----  337 (418)
T TIGR00889       263 SEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV-----  337 (418)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence            445677899999999999999999988776643332 2 22   2455667899999999988888888888887     


Q ss_pred             ccCCCccchhhhhhhHHH-HHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCC
Q 013318          146 NHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKE  222 (445)
Q Consensus       146 ~~~~~~~~~rg~~~g~~~-~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~  222 (445)
                           |+++||+++|+.+ ...++|..+||++++.+..+.+.     .+.+||+ ..|.+.+++.++..++. +++||+
T Consensus       338 -----p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~-----~~~~~~~-~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       338 -----PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA-----YGTFDWQ-TMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             -----CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-----ccCCchH-HHHHHHHHHHHHHHHHHHHHhCCc
Confidence                 4679999999996 56789999999999877654320     1124675 34555555555554443 556664

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10054 putative transporter; Provisional

Probab=99.07  E-value=3.1e-09  Score=106.26  Aligned_cols=165  Identities=16%  Similarity=0.101  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHH
Q 013318          257 MLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVF  335 (445)
Q Consensus       257 ~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~  335 (445)
                      ++.+....+..........+.++.++.+ .+++.+++|+..+.+.++..+++++.|+++||+|||+. +..+.++..++.
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~-~~~~~~~~~~~~   87 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY-MLLAITAFASGF   87 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHH
Confidence            3444333444443333444455554432 35666789999999999999999999999999999874 456665555443


Q ss_pred             HHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch---hH
Q 013318          336 LWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI---SL  411 (445)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~---~~  411 (445)
                      +  ...+.++     +...++...+.|.+.+...+...++..|.+|+++ +.++|+.+...++|..+++.+.+.+   ++
T Consensus        88 ~--~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~  160 (395)
T PRK10054         88 I--AIPLVNN-----VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSI  160 (395)
T ss_pred             H--HHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3  2233433     1333444556676666777778889999987664 4578988888888888877666543   45


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013318          412 QAMLIVMVVGICVALVGI  429 (445)
Q Consensus       412 ~~~~~i~~~~~~~~~~~~  429 (445)
                      +..+++.+++++++.+..
T Consensus       161 ~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        161 NLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            556666666656554433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.03  E-value=4.8e-09  Score=107.41  Aligned_cols=151  Identities=11%  Similarity=0.139  Sum_probs=107.3

Q ss_pred             hhhcccccc---cccccchhHHHHHHHHHHHHHHHhhhhccccC-CCCccchHhHHHHHHHHHHHHHHhhccCCCCccch
Q 013318          276 AEFTKEIVT---PALGVSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGT  351 (445)
Q Consensus       276 ~~~~~~~~~---~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~-~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  351 (445)
                      +.++.++.+   .+++..+.|.+...+.++..++++++|+++|| +|||+. +..+.++..++.+  ++.+.++     +
T Consensus        31 ~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~-l~~~~~~~~~g~~--~~~~~~~-----~  102 (475)
T TIGR00924        31 GILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT-MVLGGIVLMLGHF--MLAMSIY-----P  102 (475)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH-HHHHHHHHHHHHH--HHHhccc-----H
Confidence            344444433   24555678999999999999999999999999 799874 4677766666543  2334332     1


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC----chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHH
Q 013318          352 LYPLIMAALLGIGDGVLNTQLSALLGILFKHD----TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGIC  423 (445)
Q Consensus       352 ~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~----~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~  423 (445)
                      ...++...+.|++.+...+...+++++.+|++    ++.++++++...++|..+|+.+.+.    .++++.+.+.++.++
T Consensus       103 ~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~  182 (475)
T TIGR00924       103 DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMV  182 (475)
T ss_pred             hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            34455666789999998899999999999754    3347888888888898888777654    367777777776666


Q ss_pred             HHHHHHHHHHH
Q 013318          424 VALVGILFLTI  434 (445)
Q Consensus       424 ~~~~~~~~~~~  434 (445)
                      ++.+.++...+
T Consensus       183 ~~~l~~~~~~~  193 (475)
T TIGR00924       183 IGLLTFFAGRH  193 (475)
T ss_pred             HHHHHHHHccc
Confidence            66655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.02  E-value=4.8e-09  Score=102.84  Aligned_cols=142  Identities=15%  Similarity=0.102  Sum_probs=98.1

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH-HhhccCCCCccchhHHHHHHHHHhh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMAALLGI  363 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~G~  363 (445)
                      .+.+..++|.+.+...++.++++++.|+++||+|||+.+ ..+.++..++..+. .....++.+   ...+++..++.|+
T Consensus        29 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~  104 (365)
T TIGR00900        29 GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM-IGADLIRAVLVAVLPFVALLGGLN---IWQVYVLAGILAI  104 (365)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH-HHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH
Confidence            344556789999999999999999999999999998854 45544433332211 111111112   3456677888899


Q ss_pred             hhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHH
Q 013318          364 GDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       364 ~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      +.+...+...+++.|.+|+++ +.+++..+....+|..+++.+.+.    .+..+.+.+.++..+++.+...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       105 AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764 457899988888888887766644    3455566665555555544433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.02  E-value=7.8e-09  Score=86.34  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=84.4

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~  149 (445)
                      ...+++++.|++.||+|||+.+..+.....+..... ..++...+...+++.|++.+..++....++.|..         
T Consensus        10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------   80 (141)
T TIGR00880        10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY---------   80 (141)
T ss_pred             HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC---------
Confidence            345678889999999999999998887666554433 4577778888999999999999988888888887         


Q ss_pred             CccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       150 ~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                       ++++|++..++.+....+|..+|+.+...+.
T Consensus        81 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        81 -PPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             -ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence             4678999999999999999999998887765

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.02  E-value=2.2e-08  Score=100.02  Aligned_cols=128  Identities=13%  Similarity=-0.004  Sum_probs=87.7

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~  149 (445)
                      ...+++++.|++.||+|+|+.+..+.....+..... ..++...++..+++.+++.|...+....+..+..         
T Consensus       264 ~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~---------  334 (393)
T PRK15011        264 LEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLM---------  334 (393)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------
Confidence            334567899999999999998887765443332222 3456666667888888887776666556666664         


Q ss_pred             CccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 013318          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRK  221 (445)
Q Consensus       150 ~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~  221 (445)
                        |++||++.++++...++|..+|+++++.+..+           .+|+. .+.+..++.+++.+..+++|+
T Consensus       335 --p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-----------~g~~~-~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        335 --PGQAGSATTLYTNTSRVGWIIAGSLAGIVAEI-----------WNYHA-VFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             --CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHH-HHHHHHHHHHHHHHHHHhhcC
Confidence              45799999999988999999999998877533           24543 344445555555555556653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.98  E-value=1.3e-07  Score=95.50  Aligned_cols=332  Identities=15%  Similarity=0.121  Sum_probs=172.3

Q ss_pred             hhhhhccCCCCchHHHHHHHHHHHH---hhhhHHHHHHHhC-----cchhhhhhhHHHHHHHHHh-h----hcchhhHHh
Q 013318           50 LETTVNTEGNLGTISLGILYTSFTC---FSLVASLVVRVLG-----SKNALILGTTGYWLFVAAN-L----FPSWYTMVP  116 (445)
Q Consensus        50 ~~~~i~~~~~~g~~~~~~~~~~~ai---~~l~~g~l~dr~G-----~k~~l~~g~~~~~~~~~~~-~----~~~~~~li~  116 (445)
                      +.+.+.++.+++......+.....+   ..++.|.++|-+-     ||+-++++.++..+..... .    ..+......
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            4445555667776655554443332   4568999999763     5555666665443323221 1    234445545


Q ss_pred             HHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCC
Q 013318          117 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTS  196 (445)
Q Consensus       117 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~  196 (445)
                      .-++.-+|.+...+..-+.+.|...+        +|++||...+..|.....|.++|..+++.+....+           
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~--------~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-----------  152 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARR--------EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-----------  152 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhc--------CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-----------
Confidence            55777888888888888888888865        34559999999999999999999888776654432           


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhccCCccc-Ccccc---cccch-hhhhHHHHHHHHHHHhhccchhHHHHH-HHHHHHHH
Q 013318          197 GTTLLFIVFLGVITLGTILMCFLRKEEDK-GEKET---ADASV-NFYSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQ  270 (445)
Q Consensus       197 w~~~~~~i~~~l~~~~~~l~~~l~~~~~~-~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~g~~  270 (445)
                      ++. .|.+...+..+..+..+++.+++++ ++++.   .+++. ......++..++.++.+++|.++.... ..++....
T Consensus       153 ~~~-~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~  231 (433)
T PF03092_consen  153 PQG-VFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLP  231 (433)
T ss_pred             CeE-EehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            222 2444444444444444444432211 11110   01101 111225566777888888888775544 22222221


Q ss_pred             HHHHHh-hhcccccccc---cccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHH-HHh--hcc
Q 013318          271 QAFVWA-EFTKEIVTPA---LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW-ILI--NYS  343 (445)
Q Consensus       271 ~~f~~~-~~~~~~~~~~---~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~-~~~--~~~  343 (445)
                      ...-.+ .+...-...+   ++.+..+.+..+..++.++|..+..+...+..-|+.+ ....++..+..+. +.+  .+.
T Consensus       232 ~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~-~~t~~~~~~~~l~~~~lv~~~n  310 (433)
T PF03092_consen  232 PSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIF-VVTTLVSVLASLFDLLLVTRWN  310 (433)
T ss_pred             cCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHhcccEEEEEEEe
Confidence            111011 1100001122   4444567777777778888888777665555555533 3333332222110 000  110


Q ss_pred             CCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHH
Q 013318          344 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEG-AFAQLKVWQCASIAVV  402 (445)
Q Consensus       344 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig  402 (445)
                      -.-+.-+....+.-.++..+......-....+.+++.|+..++ .|++...+.++|..++
T Consensus       311 ~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s  370 (433)
T PF03092_consen  311 LDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVS  370 (433)
T ss_pred             eeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHH
Confidence            0000000011122223333333333333346788999988654 6776666666665444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.98  E-value=2.2e-07  Score=93.75  Aligned_cols=295  Identities=17%  Similarity=0.153  Sum_probs=170.0

Q ss_pred             HhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhhhcchhhHHhHHHHhhhh--hHHhhhhhhhHHHHhhhhhhhccCCCc
Q 013318           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFA--ASIIWVGEGTYLTAAALSHASNHKLHE  151 (445)
Q Consensus        74 i~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~~~~~~~li~~r~l~Gig--~g~~~~~~~~~i~~~~~~~~~~~~~~~  151 (445)
                      +....-|.++||+|||..+.+......+.........++.++    +.|+.  .+..+....+|+++.+          .
T Consensus        77 i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a~vadis----------~  142 (463)
T KOG2816|consen   77 ISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFAYVADIS----------S  142 (463)
T ss_pred             HHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhhheeecc----------c
Confidence            566788999999999999999987655544443334454443    33332  3456667788888887          4


Q ss_pred             cchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccCccc-
Q 013318          152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKE-  229 (445)
Q Consensus       152 ~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~~~~~~~-  229 (445)
                      +++|....|+....+..+.++||.++.......+            ....+.+..+..++..+.. +++||+..+++++ 
T Consensus       143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~------------~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~  210 (463)
T KOG2816|consen  143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG------------IALVFLIAAASGILSLLYMLLFLPESLQEKERSD  210 (463)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC------------chHHHHHHHHHHHHHHHHHhhccccccCcccccc
Confidence            6789999999999999999999999887764432            1334545455444554433 5677765433322 


Q ss_pred             cccc--c-hh-hhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh-hhccccc-ccccccchhHHHHHHHHHHH
Q 013318          230 TADA--S-VN-FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWA-EFTKEIV-TPALGVSGVGGAMAVYGAFD  303 (445)
Q Consensus       230 ~~~~--~-~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~-~~~~~~~-~~~~~~~~~g~~~~~~~i~~  303 (445)
                      .+.+  . .+ ......+.++...+.-.+|..+.+.+..++.-.....-.. ..+.+.. .-+.+.++.+...+..++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~  290 (463)
T KOG2816|consen  211 ATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILG  290 (463)
T ss_pred             ccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHH
Confidence            1110  0 00 0011112222333322234444444333222211110001 1111111 12456667777777777777


Q ss_pred             HHHHhhhh-ccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhcc-
Q 013318          304 AICSLAAG-RLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK-  381 (445)
Q Consensus       304 ~~g~~~~G-~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~-  381 (445)
                      .++.++.. .+...++.|+ ++..|+........+  ..+..+.     +.++....+ ........|...++.+.+.+ 
T Consensus       291 ~i~~l~~~~~l~~~l~~~~-~i~lGl~~~~~~~~~--~af~~~~-----w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~  361 (463)
T KOG2816|consen  291 IISQLLLLPLLSSILGEKR-LISLGLLSEFLQLLL--FAFATET-----WMMFAAGVV-VALAGIVFPAIRAFASILVSP  361 (463)
T ss_pred             HHHHHHHHHHHHHHHhhhh-HhhHHHHHHHHHHHH--HHHhccc-----hhhhHHHHH-HHhhcchhHHHHhHHHhhccc
Confidence            78887654 6777777776 677888777766543  2333222     233433333 33344566777788888875 


Q ss_pred             CCchhhHHHHHHHHHHHHHHHH
Q 013318          382 HDTEGAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       382 ~~~~~a~~~~~~~~~~g~~ig~  403 (445)
                      ++++.++++....+.+...++.
T Consensus       362 ~e~g~v~~~is~i~~l~~~~~~  383 (463)
T KOG2816|consen  362 EEQGKVFGIISGIEGLSGVVSP  383 (463)
T ss_pred             ccccchhhHHHHHHHHhhhhhH
Confidence            4566789998888888776654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.95  E-value=4.1e-08  Score=97.70  Aligned_cols=145  Identities=9%  Similarity=0.011  Sum_probs=103.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHHHH----HHhhhhHHHHHHHhCcchhhhhhhHHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF----TCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~----ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~  103 (445)
                      ++++.+.+..++...++.......|...++.+.+....+..+...    .+..++++++.||+|+|+.+.++.+...+..
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~  284 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRW  284 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            445555555555555544444444444445566655545444433    3345678899999999999999988776654


Q ss_pred             HH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHH-HHHHHhhhhhhHHHHHhh
Q 013318          104 AA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVL  181 (445)
Q Consensus       104 ~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~-~~~~lg~~iG~li~~~l~  181 (445)
                      .. ...++++.++...+++|++.+..+++...|+.+.           |+++|++..++++ ...++|.++|+++++.+.
T Consensus       285 ~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-----------~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~  353 (382)
T TIGR00902       285 AIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-----------PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY  353 (382)
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 3578888888899999999999999988888765           3567899999886 456789999999998887


Q ss_pred             cC
Q 013318          182 KD  183 (445)
Q Consensus       182 ~~  183 (445)
                      .+
T Consensus       354 ~~  355 (382)
T TIGR00902       354 PT  355 (382)
T ss_pred             Hh
Confidence            54

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12382 putative transporter; Provisional

Probab=98.94  E-value=3.3e-08  Score=98.63  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=93.1

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~  149 (445)
                      ...+++++.|++.||+|+||.+..+..+..+..... ..++...+++..++.|++.+...+...+.+.+..         
T Consensus       261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---------  331 (392)
T PRK12382        261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV---------  331 (392)
T ss_pred             HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc---------
Confidence            445678899999999999999998877665544433 4566666777889999999988877666666665         


Q ss_pred             CccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 013318          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCF  218 (445)
Q Consensus       150 ~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~  218 (445)
                       ++++||+++|+++....+|..+|+.+...+..+.           ||+. .|...+++.+++.++.++
T Consensus       332 -~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-----------g~~~-~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        332 -PSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-----------GYPS-VFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CchH-HHHHHHHHHHHHHHHHHh
Confidence             5788999999999999999999998888775432           3543 455555555555554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.94  E-value=1e-08  Score=100.10  Aligned_cols=135  Identities=20%  Similarity=0.222  Sum_probs=104.3

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+..+++++.+.+.++..+++++.|+++||+|||+ ++..+.++..++.+. . .+.++     ....++..++.|++.
T Consensus        28 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~l~~~~~~~~~~~~~-~-~~~~~-----~~~~~~~~~l~g~~~   99 (352)
T PF07690_consen   28 GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR-VLIIGLLLFALGSLL-L-AFASN-----FWLLLIARFLLGIGS   99 (352)
T ss_dssp             TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-HHHHHHHHHHHHHHH-H-HHHCC-----HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eEeehhhhhhhHHHH-h-hhhhh-----HHHHhhhcccccccc
Confidence            455668899999999999999999999999999988 566777776666322 2 23322     246777888999999


Q ss_pred             hhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVGICVALVG  428 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~~~i~~~~~~~~~~~  428 (445)
                      +...+...+++.+.+|++ ++.+++..+....+|..+++.+.+.+    ++.+.+++.+++.+++.++
T Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  100 GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            999999999999999885 45588999999999988887777543    4666778878777777664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.94  E-value=1.6e-08  Score=100.21  Aligned_cols=138  Identities=16%  Similarity=0.087  Sum_probs=98.6

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      .+.+.++++++.+.+.++..+++++.|++.||+|||+. +..+.++..++.+.  ..+.++     ....++..++.|++
T Consensus        35 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~g~~  106 (385)
T TIGR00710        35 LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV-LLLGLFIFALSSLG--LALSNN-----IETLLVLRFVQAFG  106 (385)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHH--HHHHcc-----HHHHHHHHHHHHcc
Confidence            34555678999999999999999999999999999874 45666555544332  223332     24566677889999


Q ss_pred             hhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHH
Q 013318          365 DGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      .+...+..++++.|.+|+++ +.+++..+....+|..++..+.+.    .++.+.+.+..+..++..+...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (385)
T TIGR00710       107 ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIF  177 (385)
T ss_pred             hhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            99998999999999998764 457888888888887777665543    3455666666655555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.93  E-value=2.1e-08  Score=100.05  Aligned_cols=136  Identities=13%  Similarity=0.146  Sum_probs=98.8

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+.+++|...+.+.++..+++++.|++.||+|||+ ++..+.++..++.+.  ..+.++     +..+++..++.|++.
T Consensus        40 ~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~--~~~~~~-----~~~l~~~r~~~G~~~  111 (390)
T PRK03545         40 HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK-LLIGLFVLFIASHVL--SALAWN-----FTVLLISRIGIAFAH  111 (390)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHH
Confidence            455668899999999999999999999999999997 445666555554332  233433     245666677889988


Q ss_pred             hhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~~~~~~~~~~~~  429 (445)
                      +...+...+++.+.+|+++ +.+.|+++....+|..+++.+..    ..++++.+.+.+++.++..+..
T Consensus       112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL  180 (390)
T ss_pred             HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999998764 45889888888888887766653    3466777777776665554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.92  E-value=2.5e-08  Score=99.25  Aligned_cols=163  Identities=12%  Similarity=0.034  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH
Q 013318          257 MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  336 (445)
Q Consensus       257 ~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~  336 (445)
                      ++.+....+..+.......+.++....+-+.+.++.|+..+.+.++.++++++.|++.||+|||+ ++..+.++..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~   83 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH-ILLFLVALCVIGNA   83 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH-HHHHHHHHHHHHHH
Confidence            33333333444444333334444332223445567889999999999999999999999999887 45566666555543


Q ss_pred             HHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhh----cchhH
Q 013318          337 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIG----PYISL  411 (445)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~----~~~~~  411 (445)
                        +..+.++     +..+++..++.|++.+...+...+++.+.+|++++ .+.+.+.....+|..+++.+.    ...++
T Consensus        84 --l~~~~~~-----~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  156 (382)
T PRK10091         84 --MFTLSSS-----YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSW  156 (382)
T ss_pred             --HHHHhCc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccH
Confidence              2344433     34566778889999988888888889999887644 478888777777777665444    33456


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013318          412 QAMLIVMVVGICVALV  427 (445)
Q Consensus       412 ~~~~~i~~~~~~~~~~  427 (445)
                      .+.+.+.++..++..+
T Consensus       157 r~~f~~~~~~~~~~~~  172 (382)
T PRK10091        157 RYTFLLIAVFNIAVLA  172 (382)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6777776665554443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.91  E-value=5.5e-08  Score=100.24  Aligned_cols=179  Identities=17%  Similarity=0.230  Sum_probs=107.0

Q ss_pred             hhccch-hHHHHHHHHHHHHHHHHHHhhhccccccccccc--chhHHHHHHHHHHHHHHHhhhhccccC-CCCccchHhH
Q 013318          251 LLADVR-MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSG  326 (445)
Q Consensus       251 ~l~~~~-~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~--~~~g~~~~~~~i~~~~g~~~~G~l~d~-~g~~~~~i~~  326 (445)
                      .+|+|+ ++.+....+...+.........+.++ .+.++.  ++.+.+...+........+++|+++|| +|||+. +..
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl-~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~-~~~   93 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYL-VKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV-IML   93 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-HHH
Confidence            456765 44443333333332222223333333 223343  345555555544444555688999999 599874 456


Q ss_pred             HHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-h--hhHHHHHHHHHHHHHHHH
Q 013318          327 GAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-E--GAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       327 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~--~a~~~~~~~~~~g~~ig~  403 (445)
                      +.++..++..  .+.+.++.    ...+++..++.|++.+...+...+++++.+|+++ +  .++++++...++|..+|+
T Consensus        94 g~~~~~ig~~--l~~~~~~~----~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp  167 (500)
T PRK09584         94 GAIVLAIGYA--LVAWSGHD----AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM  167 (500)
T ss_pred             HHHHHHHHHH--HHHHhccc----HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence            6666555533  22333221    1334455677889988888888899999998643 2  367888888888888887


Q ss_pred             Hhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          404 FIGPY----ISLQAMLIVMVVGICVALVGILFLTIQVE  437 (445)
Q Consensus       404 ~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  437 (445)
                      .+.++    .++++.+.+.++...++.+.++...+..+
T Consensus       168 ~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~  205 (500)
T PRK09584        168 LATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVK  205 (500)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence            66654    36777788777666666666655544433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.91  E-value=2.8e-08  Score=100.08  Aligned_cols=176  Identities=13%  Similarity=-0.005  Sum_probs=107.3

Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHH
Q 013318          252 LADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ  331 (445)
Q Consensus       252 l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~  331 (445)
                      .|+|++..+....+...+..+......|....+.+.+..+.|++.+...++..+++++.|+++||++||+.+ ..+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l-~~~~~~~   92 (417)
T PRK10489         14 KTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI-LLARGTC   92 (417)
T ss_pred             HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE-EehHHHH
Confidence            356766655443333333322222222322222233455789999999999999999999999999998754 4555444


Q ss_pred             HHHHHHHH-hhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch
Q 013318          332 VVVFLWIL-INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       332 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~  409 (445)
                      .++..+.. ..+.+.++   +..+++..++.|++.+...+...+++.+..|+++ +.+.++.+....+|..+|+.+.+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l  169 (417)
T PRK10489         93 GLGFIGLALNAFLPEPS---LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL  169 (417)
T ss_pred             HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence            43322111 11222222   2345566777788888777888888999997764 4577888777788877777666442


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHH
Q 013318          410 ----SLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       410 ----~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                          ++.+.+.+.++..+++.+...+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T PRK10489        170 IAAGGVAWNYGLAAAGTFITLLPLLR  195 (417)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence                4566666655555555444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.89  E-value=7.4e-08  Score=96.47  Aligned_cols=124  Identities=15%  Similarity=0.000  Sum_probs=86.4

Q ss_pred             hhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhcchhhHHhHHHHhhhh
Q 013318           50 LETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFA  124 (445)
Q Consensus        50 ~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~~~~~li~~r~l~Gig  124 (445)
                      ..|.+..+.+.+...    .+.......++.++.|++.||+|+|+.+..+.....+.... ...++...+....++.|++
T Consensus       242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            344444444444332    22333345667889999999999999988765544443333 2345555566677888888


Q ss_pred             hHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcC
Q 013318          125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (445)
Q Consensus       125 ~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~  183 (445)
                      .+...+...+++.+..          |+++||+..|+......+|..+||.+.+.+..+
T Consensus       322 ~~~~~~~~~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        322 VVGGQSVLYALAPLFY----------PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             HHhHHHHHHHHHHHHc----------chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence            7776666677777776          577899999999999999999999998877643

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.88  E-value=5.4e-08  Score=99.91  Aligned_cols=143  Identities=14%  Similarity=0.160  Sum_probs=97.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccC-CCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~-~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      ++.++.+.+...+.....+..+++|+++|| +|||+. +..|.++..++.+.  ....++..    ..+++..++.|+|.
T Consensus        47 ~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~-~~~g~~~~~~g~~~--~~~~~~~~----~ll~~~~~l~~ig~  119 (489)
T PRK10207         47 FSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT-IVLGAIVLAIGYFM--TGMSLLKP----DLIFIALGTIAVGN  119 (489)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH-HHHHHHHHHHHHHH--HHHhccch----hHHHHHHHHHHhcc
Confidence            334455666666776677777889999999 999985 46777666665432  22332221    23445667789999


Q ss_pred             hhhhhhhhHHHHhhccCCc---hhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDT---EGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGILFLTIQV  436 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~---~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~  436 (445)
                      +...+...++++|.+|++.   +++++.+....++|..+|+.+.++    .++++.|++..+..+++.+.+....++.
T Consensus       120 g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~  197 (489)
T PRK10207        120 GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMV  197 (489)
T ss_pred             ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence            9999999999999998653   236888888888888777666544    4677788776665566665555544343

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.88  E-value=5.5e-08  Score=98.97  Aligned_cols=144  Identities=17%  Similarity=0.184  Sum_probs=98.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCC-CCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~-g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      +++..+.+.++..+.....++.+++|+++||+ |||+. +..|.++..++.++  +...++..    ...++...+..++
T Consensus        41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~-iliG~il~~lg~ll--l~~~~~~~----~~~~l~l~li~iG  113 (493)
T PRK15462         41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA-VMLGALLMAIGHVV--LGASEIHP----SFLYLSLAIIVCG  113 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH-HHHHHHHHHHHHHH--HHHhhcch----hHHHHHHHHHHHh
Confidence            45556778888888888899999999999999 98874 46777766655432  22222111    2233334445566


Q ss_pred             hhhhhhhhhHHHHhhccCC---chhhHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          365 DGVLNTQLSALLGILFKHD---TEGAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVGICVALVGILFLTIQV  436 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~---~~~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~  436 (445)
                      .+...+..+++++|.+|++   |.++++++....++|+.+++.+.+++    ++++.|.+.++..+++.+.++...++.
T Consensus       114 ~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l  192 (493)
T PRK15462        114 YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF  192 (493)
T ss_pred             cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            6677777789999999864   33478887777788888888777654    567777777666667766665444444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.88  E-value=4.9e-08  Score=97.62  Aligned_cols=133  Identities=15%  Similarity=0.073  Sum_probs=97.2

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      .+.+.+++|...+...++..+++++.|++.||+|||+ ++..+.++..++.+.  ..+.++     ...+++..++.|++
T Consensus        50 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~-~~~~~~~~~~~~~~~--~~~~~~-----~~~l~~~r~l~G~~  121 (394)
T PRK10213         50 LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY-VVILFAVLLTLSCLL--VSFANS-----FSLLLIGRACLGLA  121 (394)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-HHHHHHHHHHHHHHH--HHHHCh-----HHHHHHHHHHHHHh
Confidence            3455667899888999999999999999999999987 455666666555432  233332     35667778899999


Q ss_pred             hhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHH
Q 013318          365 DGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVMVVGICVA  425 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~~~~~~~~  425 (445)
                      .+...+...+++.|.+|++++ .+.+......++|..+++.+.+    ..++++.+++.+++.++.
T Consensus       122 ~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~  187 (394)
T PRK10213        122 LGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLC  187 (394)
T ss_pred             hHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            999889999999999987644 5788877777777777665554    346677777666554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.87  E-value=7.1e-08  Score=97.71  Aligned_cols=133  Identities=13%  Similarity=0.083  Sum_probs=94.9

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      .+++..+.|++.+.+.++.++++++.|++.||+|+|+ ++..+.++..++.+  ...+.++     +..+++..++.|++
T Consensus        53 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-~~~~~~~~~~~~~~--~~~~~~~-----~~~l~~~~~l~g~~  124 (434)
T PRK11663         53 LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY-FMGIGLIATGIINI--LFGFSSS-----LWAFALLWVLNAFF  124 (434)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch-hHHHHHHHHHHHHH--HHHHHhH-----HHHHHHHHHHHHHH
Confidence            3455567899999999999999999999999999987 44566666555433  2233332     23445556677888


Q ss_pred             hhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHH
Q 013318          365 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVMVVGICVA  425 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~~~~~~~~  425 (445)
                      .+...+...+++.+.+|++ ++.+.++++..+.+|..++..+.+    ..++.+.+++.+++.++.
T Consensus       125 ~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        125 QGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            8877788889999999865 556889998888888877765543    346666776666554433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.87  E-value=7.4e-08  Score=93.58  Aligned_cols=136  Identities=21%  Similarity=0.233  Sum_probs=100.8

Q ss_pred             CCchHHHHHHHH----HHHHhhhhHHHHHHHhCcch-hhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhh
Q 013318           59 NLGTISLGILYT----SFTCFSLVASLVVRVLGSKN-ALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGE  132 (445)
Q Consensus        59 ~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k~-~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~  132 (445)
                      +.+....+....    ...++.++.+++.||+|+|+ .+.++..+..+..... ..++...+++..++.|++.+..++..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  286 (352)
T cd06174         207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL  286 (352)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence            555544443333    44567778899999999999 9988887776655543 45667777888999999999999999


Q ss_pred             hhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHH
Q 013318          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLG  212 (445)
Q Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~  212 (445)
                      .+++.+..          |+++|++.+|+.....+.|..+|+.+...+....           +|+ ..+.+.+++.+++
T Consensus       287 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-----------~~~-~~~~~~~~~~~i~  344 (352)
T cd06174         287 LTLASELA----------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-----------GYG-GVFLILAALALLA  344 (352)
T ss_pred             HHHHHhhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------Ccc-hHHHHHHHHHHHH
Confidence            99998887          4689999999999999999999999888775432           343 3355555555555


Q ss_pred             HHHH
Q 013318          213 TILM  216 (445)
Q Consensus       213 ~~l~  216 (445)
                      .++.
T Consensus       345 ~i~~  348 (352)
T cd06174         345 ALLL  348 (352)
T ss_pred             HHHh
Confidence            4443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.86  E-value=1.4e-07  Score=93.15  Aligned_cols=125  Identities=10%  Similarity=0.078  Sum_probs=88.4

Q ss_pred             HHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCc
Q 013318           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE  151 (445)
Q Consensus        73 ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~  151 (445)
                      .++.++.|++.||+|+|+.+.++..+..+.... ...++...++..+++.|++.+...+....++.+..           
T Consensus       249 ~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-----------  317 (375)
T TIGR00899       249 IPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLM-----------  317 (375)
T ss_pred             HHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Confidence            446678999999999999988876654443332 23466666777889999998888777667776664           


Q ss_pred             cchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       152 ~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                      |+++++++|++....++|..+|+.+...+....           +|+ ..+.+.+++.+++.++..+++
T Consensus       318 ~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-----------g~~-~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       318 PGRAGAATTLYTNTGRVGWIIAGSVGGILAERW-----------SYH-AVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cch-hHHHHHHHHHHHHHHHHheec
Confidence            456789999999999999999999888765432           343 345555555555555545554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.85  E-value=1.4e-07  Score=96.12  Aligned_cols=176  Identities=13%  Similarity=0.128  Sum_probs=123.3

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhc-cCCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcc--hhhhhhhH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVN-TEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSK--NALILGTT   97 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k--~~l~~g~~   97 (445)
                      +..|+....-++.++.-.+..+...+...+. ++.+++...+..+..    +-.++++..|++.||+|.|  +++..+..
T Consensus       278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            4567777776777776666665554444433 346666655333322    3456888999999999999  89888887


Q ss_pred             HHHHHHH-Hhh--------hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHH
Q 013318           98 GYWLFVA-ANL--------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS  168 (445)
Q Consensus        98 ~~~~~~~-~~~--------~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~l  168 (445)
                      ++.+..+ +.+        .++.+.+.+..++.|+..|..++..-++.++..          |+++.++++|+|......
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li----------P~g~e~efFgly~i~gk~  427 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI----------PPGREAEFFGLYAITGKA  427 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC----------CCchhhHHHHHHHHHHHH
Confidence            7643222 333        456667778899999999999999999999998          467889999999999999


Q ss_pred             hhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 013318          169 HQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRK  221 (445)
Q Consensus       169 g~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~  221 (445)
                      +..+||++-..+....+          +.| .-+....++.+++.++.++++.
T Consensus       428 ss~lGPll~g~i~~~tg----------~~r-~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  428 SSWLGPLLFGLITDATG----------SQR-YGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHHHHHHHHHHHHHHhC----------Cch-hHHHHHHHHHHHHHHHHhhccc
Confidence            99999988777665432          123 2233444455566666566654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=98.84  E-value=5.2e-08  Score=99.72  Aligned_cols=167  Identities=11%  Similarity=0.042  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH
Q 013318          257 MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  336 (445)
Q Consensus       257 ~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~  336 (445)
                      ++.+...++...+........+|....+.+.+..+.+.+.+.+.++..++.++.|+++||+|||+. ...+.++..++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~   90 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI-FFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHH
Confidence            344444444444443333344554433344555567888888889999999999999999999874 4455555444433


Q ss_pred             HHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhcc----hhH
Q 013318          337 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGPY----ISL  411 (445)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~~----~~~  411 (445)
                      .  ..+.++     ...+++..++.|++.+...+...+.+.+.+|++++ .+++.++....+|..+++.+.+.    .++
T Consensus        91 ~--~~~~~~-----~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw  163 (471)
T PRK10504         91 F--CALSGT-----LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASW  163 (471)
T ss_pred             H--HHHhCC-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccH
Confidence            2  223332     24456678889999999888889999999987644 57888888888887777655533    456


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013318          412 QAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       412 ~~~~~i~~~~~~~~~~~~~~  431 (445)
                      .+.+.+...+..++.+....
T Consensus       164 ~~~f~~~~~~~~l~~~~~~~  183 (471)
T PRK10504        164 HWIFLINIPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77777766655555544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.83  E-value=4.5e-08  Score=98.48  Aligned_cols=133  Identities=13%  Similarity=0.123  Sum_probs=97.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++..+.|++.+.+.++..+++++.|++.||+|||+ ++..+.++..++..  ...+.++     +..+++.-++.|++.
T Consensus        39 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~-~~~~~~~~~~~~~~--~~~~~~~-----~~~l~~~r~l~G~~~  110 (412)
T TIGR02332        39 GLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR-WIAGIMVLWGIAST--ATMFATG-----PESLYLLRILVGIAE  110 (412)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH-HHHHHHHHHHHHHH--HHHHhcC-----HHHHHHHHHHHHHHH
Confidence            445567899999999999999999999999999988 44566666555433  2234433     245667788899999


Q ss_pred             hhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----------hhHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----------ISLQAMLIVMVVGICVAL  426 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----------~~~~~~~~i~~~~~~~~~  426 (445)
                      +...+...+++.+.+|++ ++.+.++++....+|..++..+.+.          .+.++.+.+.++..++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~  182 (412)
T TIGR02332       111 AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILG  182 (412)
T ss_pred             hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHH
Confidence            998888888999999875 5568899888888888777665532          256667777655544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.83  E-value=7.1e-08  Score=94.84  Aligned_cols=144  Identities=12%  Similarity=-0.043  Sum_probs=92.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHH
Q 013318           29 DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA  104 (445)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~  104 (445)
                      +.+.+.+.+++............+...++.+.+...    .+.......+++++.|++.||+|||+.+.++..+..+...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  285 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMA  285 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            344444444444333332223333333334444332    2233334556788999999999999999888776655444


Q ss_pred             Hh-hhcc--hhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          105 AN-LFPS--WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       105 ~~-~~~~--~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                      .. ..++  ...++...++.|++.+..++....++.|..          ++++||++.|++.....+|..+|+.+...+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  355 (377)
T TIGR00890       286 AMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIF----------GPANSAANYGFLYTAKAVAGIFGGLIASHAL  355 (377)
T ss_pred             HHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHh----------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            32 3332  223334567888888877776677777776          4678999999999999999999998887765


Q ss_pred             c
Q 013318          182 K  182 (445)
Q Consensus       182 ~  182 (445)
                      .
T Consensus       356 ~  356 (377)
T TIGR00890       356 T  356 (377)
T ss_pred             h
Confidence            3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.83  E-value=5.2e-08  Score=97.38  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=83.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhh
Q 013318          287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG  366 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  366 (445)
                      .+....+.+...+.+...+..++.|++.||++||+. +..+.++..++.+.  ..+.++        .++..++.|++.+
T Consensus        35 ~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v-l~~~~~~~~~~~~~--~~~~~~--------~~~~r~l~G~~~a  103 (393)
T PRK11195         35 YPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV-MFIANGIKLLGCLL--MLFGIH--------PLLAYGLVGIGAA  103 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh-hHHHHHHHHHHHHH--HHHHHH--------HHHHHHHHHHHHH
Confidence            344567888889999999999999999999999984 45666555443321  122211        1345567899999


Q ss_pred             hhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhcch
Q 013318          367 VLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       367 ~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~~~  409 (445)
                      ...|...+++.|.+|++++ ++.|+.+....+|..+|+.+++.+
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987654 588988888888888887776543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.83  E-value=6.9e-08  Score=99.38  Aligned_cols=176  Identities=15%  Similarity=0.113  Sum_probs=110.4

Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHH---HhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhH
Q 013318          250 TLLADVRMLLIIPLFAYSGLQQAFV---WAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSG  326 (445)
Q Consensus       250 ~~l~~~~~~~l~~~~~~~g~~~~f~---~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~  326 (445)
                      ..+|+|.+..++.......+.....   .+++...   .+-+...++++.+...+-.++.+++.|.+.||+.||+.+ +.
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~---lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril-i~   80 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ---LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL-IL   80 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH-HH
Confidence            4578888877766555444432111   2333221   122344678888888889999999999999999998854 44


Q ss_pred             HHHHHHH-HHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHH
Q 013318          327 GAIAQVV-VFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFF  404 (445)
Q Consensus       327 g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~  404 (445)
                      +-++.++ ..++..+.+....+   +..+++..++.|++.+...|..++++.++.|+++- .+.++.+...+++..+|+.
T Consensus        81 ~~~~~~~~~~~L~~l~~~~~~~---~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPa  157 (524)
T PF05977_consen   81 SQLLRALVALLLAVLAFFGLLS---PWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPA  157 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccch
Confidence            4443332 22211222222222   35677888999999999999999999999997654 4667666555555555544


Q ss_pred             hhc----chhHHHHHHHHHHHHHHHHHHHHHH
Q 013318          405 IGP----YISLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       405 i~~----~~~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      +++    ..+..+.+.+-++..++++......
T Consensus       158 lgG~Lva~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  158 LGGILVAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            443    4466667776666555555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.83  E-value=8.7e-08  Score=95.58  Aligned_cols=135  Identities=20%  Similarity=0.152  Sum_probs=93.6

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+.++++...+.+.++..++.++.|+++||+|||+ ++..+.++..++..  ...+.++     ....++..++.|++.
T Consensus        34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-~l~~~~~~~~i~~~--~~~~~~~-----~~~~~~~~~l~g~~~  105 (392)
T PRK10473         34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP-VAIPGAALFIIASL--LCSLAET-----SSLFLAGRFLQGIGA  105 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH-HHHHHHHHHHHHHH--HHHHhCc-----HHHHHHHHHHHHhhh
Confidence            444557888888999999999999999999999987 44566655555433  2233332     234556677889988


Q ss_pred             hhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVMVVGICVALVG  428 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~~~~~~~~~~~  428 (445)
                      +...+..++++.+.+|+++ +.+.+..+....+|..+++.+..    ..++.+.+++.+++.++..+.
T Consensus       106 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        106 GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence            8888888899999997654 45778877777777666655543    335556666666555544443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.82  E-value=2.9e-07  Score=94.75  Aligned_cols=162  Identities=9%  Similarity=0.026  Sum_probs=93.9

Q ss_pred             HHHhhhHhhhhhhc-cCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH---h-hhcchh
Q 013318           42 LAYGAAQNLETTVN-TEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA---N-LFPSWY  112 (445)
Q Consensus        42 ~~~~~~~~~~~~i~-~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~---~-~~~~~~  112 (445)
                      ..++......|.+. .+.+.+...    .........+++++.|++.||+|||+++..+.++..+....   . ..++..
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG  343 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            34444444445443 333444322    22223344566778999999999999998887643322211   1 234566


Q ss_pred             hHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccC
Q 013318          113 TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLG  192 (445)
Q Consensus       113 ~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~  192 (445)
                      .++..+++.|++.+..+.....++.+.+          |++.||+.+|+.+.....+..++|.+...+....        
T Consensus       344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~----------p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--------  405 (490)
T PRK10642        344 LIFAGLLMLAVILNCFTGVMASTLPAMF----------PTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--------  405 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            6677888888877766666666777766          5788999999754444455566666655544221        


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHhccCCcc
Q 013318          193 GSTSGTTLLFIVFLGVITLGTILMCFLRKEED  224 (445)
Q Consensus       193 ~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~  224 (445)
                        .+|+...+ ...+..+++.+..+++||+++
T Consensus       406 --~~~~~~~~-~~~~~~~i~~~~~~~~pes~~  434 (490)
T PRK10642        406 --QNLMMPAY-YLMVVAVIGLITGVTMKETAN  434 (490)
T ss_pred             --CCchHHHH-HHHHHHHHHHHHHHHhccccC
Confidence              12443222 333444444445566777543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.82  E-value=7.5e-08  Score=96.47  Aligned_cols=136  Identities=13%  Similarity=0.166  Sum_probs=98.1

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      .+.+...+|+......+...+.+++.|+++||++||+ ++..+.++..++.+.  ..+.++     +..+++..++.|++
T Consensus        41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~-~l~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~l~g~~  112 (400)
T PRK11646         41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP-MIVTGMLMRAAGFAT--MAIAHE-----PWLLWLSCILSGLG  112 (400)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH-HHHHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHH
Confidence            3555668899999999999999999999999999887 456666666655432  233332     24556677888998


Q ss_pred             hhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHHH
Q 013318          365 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI---SLQAMLIVMVVGICVALVG  428 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~---~~~~~~~i~~~~~~~~~~~  428 (445)
                      .+...+...+++.+.+|++ ++.++|+++....+|..+|+.+.+.+   ++.+.+++.++.+++..+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        113 GTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            8888888889999999765 45688999888888888877666543   4555666655555544433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.82  E-value=9.7e-08  Score=95.96  Aligned_cols=146  Identities=12%  Similarity=0.035  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHH
Q 013318          257 MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  336 (445)
Q Consensus       257 ~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~  336 (445)
                      +..+...++..|+..+......|..-.+.+++..+.|++.+.+.++..+++++.|++.||+|+|+ .+..+.++..++.+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-~~~~g~~l~~~g~~   83 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA-GILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHH
Confidence            34444556666766544433333322223455668899999999999999999999999999987 45677766665543


Q ss_pred             HHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhc
Q 013318          337 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGP  407 (445)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~  407 (445)
                      + .......++   +...++..++.|++.+..++..++++.+..|++++ +..+..+..+++|..+++.+.+
T Consensus        84 l-~~~~~~~~~---~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885        84 L-FWPAAEIMN---YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             H-HHHHHhhcc---HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 111111111   34566777888999999999888999888877644 4678888888888887766553

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.80  E-value=6.1e-08  Score=95.95  Aligned_cols=137  Identities=15%  Similarity=0.178  Sum_probs=98.3

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      .+++.++++...+.+.++..+++++.|++.||+|||+ ++..+.++..++...  ..+.++     ....++..++.|++
T Consensus        21 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~i~~~~--~~~~~~-----~~~~~~~~~l~g~~   92 (377)
T PRK11102         21 FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP-VILGGTLVFALAAVA--CALAQT-----IDQLIYMRFLHGLA   92 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH-HHHHHHHHHHHHHHH--HHHHcc-----HHHHHHHHHHHHHH
Confidence            3455668899999999999999999999999999887 455666665554332  223322     24566677888999


Q ss_pred             hhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHH
Q 013318          365 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~  429 (445)
                      .+...+...+++.+.+|++ ++.+.++.+....+|..+++.+.+.    .+..+.+++.++++++..+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         93 AAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            9888888899999999876 4557888888878887777666543    355566666666655554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.80  E-value=1e-07  Score=94.88  Aligned_cols=114  Identities=11%  Similarity=-0.026  Sum_probs=86.1

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++..+.|.+.+.+.++..+++++.|++.||+|||+.+ ..+.++..++.+  ...+.++     +..+++..++.|++.
T Consensus        43 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~-~~~~~~~~~~~~--~~~~~~~-----~~~l~~~~~l~G~~~  114 (405)
T TIGR00891        43 GLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM-VTSIVLFSAGTL--ACGFAPG-----YITMFIARLVIGIGM  114 (405)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHH--HHHHhcc-----HHHHHHHHHHHHhhh
Confidence            45566789999999999999999999999999998854 455555444432  2233332     345677788999999


Q ss_pred             hhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhc
Q 013318          366 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  407 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~  407 (445)
                      +...+...+++.|.+|++ ++.+.++++....+|..++..+.+
T Consensus       115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~  157 (405)
T TIGR00891       115 GGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS  157 (405)
T ss_pred             hhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888899999999866 445788888888888877765553

>PRK03699 putative transporter; Provisional

Probab=98.80  E-value=2.1e-07  Score=92.97  Aligned_cols=171  Identities=13%  Similarity=0.031  Sum_probs=104.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhc-cCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVN-TEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      +.++.+.++.++....+.......|.+. ++.+++...    .+.......++.+..|++.||+++|+.+..+..+..+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL  284 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence            3445555555555444444444445443 334555433    23344456788999999999999999988776554443


Q ss_pred             HHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       103 ~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                      .... ..++...+.+..++.|++.+..++...++..+..           ++++++..|.......+|..+||.+...+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~  353 (394)
T PRK03699        285 MYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-----------KVASPKLVNFILTCGTIGTMLTFVVTSPIV  353 (394)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------cCCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3322 3455555556678888888877777665555543           345667788888888899999998887775


Q ss_pred             cCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 013318          182 KDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRK  221 (445)
Q Consensus       182 ~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~  221 (445)
                      ...           |++. .+++..++..++.++.+++++
T Consensus       354 ~~~-----------g~~~-~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        354 AHF-----------GLQA-ALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHh-----------Cchh-hhhhhHHHHHHHHHHHHHHHH
Confidence            432           3433 333444444455444444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.80  E-value=9.9e-08  Score=95.37  Aligned_cols=115  Identities=16%  Similarity=0.071  Sum_probs=89.5

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+.++.|++.+.+.++..+++++.|++.||+|||+ ++..+..+..++.+  ...+.++     +..+++..++.|++.
T Consensus        40 ~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~-~l~~~~~l~~~~~~--~~~~a~~-----~~~ll~~r~l~Gig~  111 (393)
T PRK09705         40 GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERR-SVAISLLLIAVGAL--MRELYPQ-----SALLLSSALLGGVGI  111 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchH-HHHHHHHHHHHHHH--HHHHCcc-----hHHHHHHHHHHHhHH
Confidence            445567899999999999999999999999999998 45677777666644  2344544     245667788999999


Q ss_pred             hhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          366 GVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      +...+..++++.+.+|++++.+.+.+......|..++..+.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~  154 (393)
T PRK09705        112 GIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPW  154 (393)
T ss_pred             HHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888999999998666668888888777777777666554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.79  E-value=1.3e-05  Score=78.84  Aligned_cols=294  Identities=17%  Similarity=0.139  Sum_probs=166.7

Q ss_pred             HHhhhhHHHHHHHhCcchhhhhhhHHHHH-HHHHhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCc
Q 013318           73 TCFSLVASLVVRVLGSKNALILGTTGYWL-FVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE  151 (445)
Q Consensus        73 ai~~l~~g~l~dr~G~k~~l~~g~~~~~~-~~~~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~  151 (445)
                      ...-++...+.|.++.|++++++.+...+ ..+..+.++...+-+.-++-|++.+... +-.+|+=...          +
T Consensus        55 l~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v----------~  123 (412)
T PF01770_consen   55 LAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEV-AYYSYIYSVV----------D  123 (412)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHH-HHHHHheeec----------C
Confidence            34556788999999999999999986544 4444567888888888999999887633 3345554333          4


Q ss_pred             cchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc----Cc
Q 013318          152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK----GE  227 (445)
Q Consensus       152 ~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~----~~  227 (445)
                      +++-.++.+..-+....|-.+|.+++-.+.....         .+.+...+ +-.....+++++.+++|.+++.    +.
T Consensus       124 ~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~---------~sy~~L~~-isl~~~~~a~~~~~fLP~~~~S~~f~r~  193 (412)
T PF01770_consen  124 KEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG---------VSYFQLNY-ISLASVSLALLIALFLPMPKRSLFFHRK  193 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCHHHHHH-HHHHHHHHHHHHHHHcCCCCcccceecc
Confidence            6677788888888888888888888876653221         12223223 3333344566666888865431    10


Q ss_pred             c---------ccc------ccc------h-hhhhH----HHHHHHHHHHhhccchhHH--HHHHHHHHHHHH--HHHHhh
Q 013318          228 K---------ETA------DAS------V-NFYSY----LVSLSKSITTLLADVRMLL--IIPLFAYSGLQQ--AFVWAE  277 (445)
Q Consensus       228 ~---------~~~------~~~------~-~~~~~----~~~~~~~~~~~l~~~~~~~--l~~~~~~~g~~~--~f~~~~  277 (445)
                      +         +.+      +.+      . .....    .+...++.++..++|+++.  +.-.+-.+|+.+  .++...
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~L  273 (412)
T PF01770_consen  194 PPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSL  273 (412)
T ss_pred             CccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            0         000      000      0 00111    1223344555667777643  333344455443  233221


Q ss_pred             hcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHH--HHHHHHHHHHHhhccCCCCccchhHHH
Q 013318          278 FTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA--IAQVVVFLWILINYSVTSGVLGTLYPL  355 (445)
Q Consensus       278 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (445)
                      +- .+..++-....-|.+-+...+.++++++..|++..+..+...+ ..+.  ++.+.++  .++.+.++     .++.+
T Consensus       274 W~-~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l-~l~~~S~l~a~~L--~lm~~t~~-----Iwv~Y  344 (412)
T PF01770_consen  274 WD-TVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGEL-ALGVFSLLQAGLL--FLMSFTGN-----IWVCY  344 (412)
T ss_pred             HH-hcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHH-HHHHHHHHHHHHH--HHHHHhhH-----HHHHH
Confidence            11 1111122223457777888888888899999985544433222 2222  2222222  23344433     35677


Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHH
Q 013318          356 IMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQC  396 (445)
Q Consensus       356 ~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~  396 (445)
                      +.+++++.......+....-++....+++ +-.||+.++...
T Consensus       345 ~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al  386 (412)
T PF01770_consen  345 AGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVAL  386 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHH
Confidence            88888887776666666666666554443 336787766543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.79  E-value=6.9e-08  Score=96.01  Aligned_cols=146  Identities=12%  Similarity=-0.024  Sum_probs=101.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHH
Q 013318          256 RMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVF  335 (445)
Q Consensus       256 ~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~  335 (445)
                      .++.+....+..+...+.....+|.+..+.+.+..++|.+.+.+.++..+++++.|+++||+|||+. +..+.++..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~-~~~~~~~~~~~~   85 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS-YYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            3444444444455444444444554444445566689999999999999999999999999999874 456666655544


Q ss_pred             HHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch
Q 013318          336 LWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~  409 (445)
                      ..  ..+.++     +..+++..++.|++.+...+...+.+.+..+++ ++.+++.++....+|..+|..+.+..
T Consensus        86 ~~--~~~~~~-----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         86 AG--LGLMVG-----FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HH--HHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            32  234433     245667788899998888887777777777654 45688988888888888887776543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.77  E-value=7.5e-08  Score=98.73  Aligned_cols=137  Identities=16%  Similarity=0.099  Sum_probs=99.1

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+.++.+.+.+.+.++.+++.++.|++.||+|||+. +..+.++..++.+  .....++     ...+++..++.|++.
T Consensus        33 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~--~~~~~~~-----~~~l~~~~~~~G~~~  104 (485)
T TIGR00711        33 GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL-FLISTFAFTLGSL--LCGVAPN-----LELMIIFRVIQGFGG  104 (485)
T ss_pred             CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH-HHHHHHHHHHHHH--HHhCcCC-----HHHHHHHHHHHHhhh
Confidence            4455678899999999999999999999999999874 4566666555433  2233333     245667788899999


Q ss_pred             hhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      +...+..++++.+.+|++ ++.+.++++....+|..+++.+.+.    .++.+.+++...+.++..+...
T Consensus       105 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  174 (485)
T TIGR00711       105 GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF  174 (485)
T ss_pred             hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHH
Confidence            999999999999999865 4457888888888888777666543    3556666666555555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.77  E-value=1.3e-07  Score=94.55  Aligned_cols=124  Identities=14%  Similarity=0.086  Sum_probs=92.0

Q ss_pred             HHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCc
Q 013318           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE  151 (445)
Q Consensus        73 ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~  151 (445)
                      .++.+..|++.||+|+|+.+..+..+..+..+.. ..++...+++.+++.|++.+...+...+++.+..          +
T Consensus       272 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~  341 (408)
T PRK09874        272 LLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS----------S  341 (408)
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC----------C
Confidence            4556678899999999999998877655544432 4566777778899999999998888777776554          4


Q ss_pred             cchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 013318          152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCF  218 (445)
Q Consensus       152 ~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~  218 (445)
                      +++||+.+|++.....+|..+|+++++.+...           .+|+ ..|.+.+++.+++.++.++
T Consensus       342 ~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-----------~g~~-~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        342 NQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-----------YGFR-AVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             cccceeeehHHHHHHHHHHHhhHHHHHHHHhh-----------cchh-HHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999998877533           2344 3455666666666555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.77  E-value=1.8e-07  Score=93.73  Aligned_cols=159  Identities=11%  Similarity=-0.027  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCC-----CCccchHhHHHHHHHHHHHH
Q 013318          263 LFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-----PSITFIVSGGAIAQVVVFLW  337 (445)
Q Consensus       263 ~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~-----g~~~~~i~~g~~~~~~~~~~  337 (445)
                      +++.+|+..++.....|.++++++++.+++|++....-.  .+.++++|+++||+     |||+.++..+.++..+++..
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence            355677777777777888888888888999987655444  58889999999999     78776666666665554432


Q ss_pred             HHhhcc-CCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhh----c-chh
Q 013318          338 ILINYS-VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIG----P-YIS  410 (445)
Q Consensus       338 ~~~~~~-~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~----~-~~~  410 (445)
                      +  .+. +..+   ...+++..++.+++.+...+...+++.+.+|++++ .+.++......+|..++..+.    + ..+
T Consensus        85 l--~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g  159 (402)
T PRK11902         85 M--AFCPPHAA---LWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG  159 (402)
T ss_pred             H--HhcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence            2  232 2222   23345555667777888888889999999987744 466766666666665554332    2 235


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013318          411 LQAMLIVMVVGICVALVG  428 (445)
Q Consensus       411 ~~~~~~i~~~~~~~~~~~  428 (445)
                      ....+.+.+++.++....
T Consensus       160 w~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        160 WGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666777766665554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.76  E-value=2.5e-07  Score=93.23  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=92.3

Q ss_pred             HHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccC
Q 013318           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (445)
Q Consensus        70 ~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~  148 (445)
                      ...+++.++.|++.||+|+|+.+..+.++.++..... +.++...++..+++.|++.+...+....++.+..        
T Consensus       273 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------  344 (420)
T PRK09528        273 FLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF--------  344 (420)
T ss_pred             HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence            3456788899999999999999998888776654443 5677777888899999999888777777777776        


Q ss_pred             CCccchhhhhhhH-HHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHH-hccC
Q 013318          149 LHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMC-FLRK  221 (445)
Q Consensus       149 ~~~~~~rg~~~g~-~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~-~l~~  221 (445)
                        +++.++...+. ++....+|.++|+++.+.+...           .||+ ..|.+.+++.++..++.+ ++++
T Consensus       345 --~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-----------~G~~-~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        345 --DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-----------IGFQ-GTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             --CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-----------hCch-HHHHHHHHHHHHHHHHHHHHhcC
Confidence              35667776554 5566788999999888776543           2454 345555555554444443 3443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.75  E-value=3.3e-07  Score=95.45  Aligned_cols=196  Identities=16%  Similarity=0.159  Sum_probs=115.8

Q ss_pred             hhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccccc-
Q 013318          111 WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAA-  189 (445)
Q Consensus       111 ~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~-  189 (445)
                      +..++++-++.|+|+.++++-.-+|+.|+.          .+++-..++|+.+++..+|+++|-+++...++...+=+. 
T Consensus       237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnv----------k~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~  306 (735)
T KOG3626|consen  237 FLLFFLGQLLLGIGATPIFTLGISYIDDNV----------KKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLS  306 (735)
T ss_pred             HHHHHHHHHHhhcCCCCCccCCCccccccc----------cccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccC
Confidence            346677899999999999999999999997          356788999999999999999999998877654321100 


Q ss_pred             ----cc-CC-CCC-cchhHHHHHHHHHHHHHHHHHhccCCcccC-------cc----cccc---cchhhhhHHHHHHHHH
Q 013318          190 ----LL-GG-STS-GTTLLFIVFLGVITLGTILMCFLRKEEDKG-------EK----ETAD---ASVNFYSYLVSLSKSI  248 (445)
Q Consensus       190 ----~~-~~-~~~-w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~-------~~----~~~~---~~~~~~~~~~~~~~~~  248 (445)
                          ++ +. +.| || .=|++.+.+.++..+.++++|+..++.       +.    +.++   .+.......++-++.+
T Consensus       307 ~~~it~~DPrWIGAWW-lGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~  385 (735)
T KOG3626|consen  307 PIGITPTDPRWIGAWW-LGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSI  385 (735)
T ss_pred             CCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHH
Confidence                00 00 012 32 334455555555555556777532211       00    0000   0001122445666778


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccccccccc--hhHHHHHHHHH-HHHHHHhhhhccccCCC
Q 013318          249 TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGA-FDAICSLAAGRLTTGLP  318 (445)
Q Consensus       249 ~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~--~~g~~~~~~~i-~~~~g~~~~G~l~d~~g  318 (445)
                      +++++||-+..........-....-+.+..|+++ ++.++.+  .+-+++...++ +..+|-+++|++.+|+.
T Consensus       386 ~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyL-E~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  386 KRLLSNPIFMLVVLASVIESLAITGYITFLPKYL-ETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHH-HHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence            8899999887665433222211112224455553 5555543  44444433333 33467778899998874

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.73  E-value=5.9e-07  Score=91.11  Aligned_cols=140  Identities=9%  Similarity=0.070  Sum_probs=93.7

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhh
Q 013318          284 TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  363 (445)
Q Consensus       284 ~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  363 (445)
                      +.+++.++.+...+.+.++..+++++.|+++||+|||+. +..+.++..++...  ....++... ....+++..++.|+
T Consensus        55 ~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~~--~~~~~~~~~-~~~~l~~~~~l~g~  130 (438)
T TIGR00712        55 EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILSAAVMLL--MGFVPWATS-SIAIMFVLLFLNGW  130 (438)
T ss_pred             HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee-hHHHHHHHHHHHHH--Hhccccccc-hHHHHHHHHHHHHH
Confidence            345666788999999999999999999999999998874 45666555544321  122221100 02334555667888


Q ss_pred             hhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHHHHHHH
Q 013318          364 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG-----PYISLQAMLIVMVVGICVALV  427 (445)
Q Consensus       364 ~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~-----~~~~~~~~~~i~~~~~~~~~~  427 (445)
                      +.+...+.....+.+.+|++ ++.+.|+++....+|..++..+.     ...++.+.+++.+++.++..+
T Consensus       131 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       131 FQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             HhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            88877777788888999765 55688998888887776654332     223556667776666555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.73  E-value=1.8e-07  Score=93.70  Aligned_cols=136  Identities=15%  Similarity=0.136  Sum_probs=93.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+.++.+.....+.++..+++++.|+++||+|||+ ++..+..+..++.+.  ..+.++     ...+++..++.|++.
T Consensus        44 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~l~G~~~  115 (406)
T PRK15402         44 NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP-VMLAGVAFFILTCLA--ILLAQS-----IEQFTLLRFLQGIGL  115 (406)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHH--HHHHcc-----HHHHHHHHHHHHhHh
Confidence            344457788888999999999999999999999987 445665555544332  233332     245566778889988


Q ss_pred             hhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~~~~~~~~~~~~  429 (445)
                      +...+..++.+.|.+|++++ .+.+.......+|..+++.+.+    ..++.+.+++.+++.+++.+..
T Consensus       116 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        116 CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL  184 (406)
T ss_pred             hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            88888888999999987755 3567666666666666655543    3355666766666665555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.73  E-value=2.5e-07  Score=93.14  Aligned_cols=135  Identities=14%  Similarity=0.128  Sum_probs=94.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhh
Q 013318          287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG  366 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  366 (445)
                      .+.+..+...+.+.++.++++++.|+++||+|||+ ++..+.++..++.+  ...+.++     ...+++.-++.|++.+
T Consensus        48 ~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~--~~~~a~~-----~~~l~~~r~l~Gi~~~  119 (413)
T PRK15403         48 ADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP-VLITGALIFTLACA--ATLFTTS-----MTQFLIARFIQGTSIC  119 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH-HHHHHHHHHHHHHH--HHHHcCC-----HHHHHHHHHHHHHHHH
Confidence            34456777788889999999999999999999987 44566665555433  2233433     2456677788888887


Q ss_pred             hhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHHH
Q 013318          367 VLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       367 ~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~~~~~~~~~~~~  429 (445)
                      ...+..++++.|.+|++++ .+.+.++....+|..+|+.+.+    ..++.+.+++.++..+++.+..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~  187 (413)
T PRK15403        120 FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL  187 (413)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            6666677888899987654 4678777777777777665554    3466777777777666665443

>PRK11043 putative transporter; Provisional

Probab=98.72  E-value=2.5e-07  Score=92.59  Aligned_cols=138  Identities=15%  Similarity=0.106  Sum_probs=93.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+.++++...+.+.++..+++++.|+++||+|||+. +..+.++..++..  ...+.++     ...+++..++.|++.
T Consensus        37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~--~~~~~~~-----~~~l~~~~~l~G~~~  108 (401)
T PRK11043         37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV-LLAGLSLFALGSL--GMLWVES-----AAQLLVLRFVQAVGV  108 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH-HHHHHHHHHHHHH--HHHHhcC-----HHHHHHHHHHHHhhh
Confidence            4556688999999999999999999999999999874 4566555544432  2233332     244556667788887


Q ss_pred             hhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      +...+...+++.+.+|++++ .+++..+....+|..+++.+.+    ..++++.+++..++.++..+...+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        109 CSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            77777777889999987754 4667666666666666554443    345666676666655555544433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.72  E-value=2.7e-07  Score=92.10  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=93.1

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHH
Q 013318          276 AEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPL  355 (445)
Q Consensus       276 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (445)
                      +.++....+.+.+..+.+...+.+.++..+++++.|+++||+|||+. +..+.++..++.+.  ....++     ...++
T Consensus        29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~--~~~~~~-----~~~l~  100 (394)
T PRK11652         29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV-ILVGMSIFILGTLV--ALFAHS-----LTVLI  100 (394)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHH--HHHHcc-----HHHHH
Confidence            33443323345556678999999999999999999999999999874 45665555544321  223322     24566


Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHH
Q 013318          356 IMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICV  424 (445)
Q Consensus       356 ~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~  424 (445)
                      +..++.|++.+...+...++..+.+++++ +.+.+.++....++..+++.+.+.    .++.+.+++.++..++
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~  174 (394)
T PRK11652        101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAG  174 (394)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            67788888888777777788888887554 446777777777776666555433    3455566665554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.71  E-value=2.9e-07  Score=94.90  Aligned_cols=158  Identities=14%  Similarity=0.064  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCC
Q 013318          266 YSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT  345 (445)
Q Consensus       266 ~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~  345 (445)
                      ...+..+......|....+-+.+.++.+.+...+.++..++.++.|+++||+|||+ ++..+.++..++.+.  ....++
T Consensus        17 ~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~-~l~~~~~~~~~~~~~--~~~a~~   93 (495)
T PRK14995         17 PVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR-LLMLGGTLFGLASLA--AAFSPT   93 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH--HHHcCC
Confidence            33333333333344332222334456788888999999999999999999999987 445666665555432  233433


Q ss_pred             CCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhc-cCC-chhhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHH
Q 013318          346 SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF-KHD-TEGAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVMV  419 (445)
Q Consensus       346 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~-~~~-~~~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~~  419 (445)
                           ...+++.-++.|++.+...+....++.+.+ |++ ++.++|++.....+|..+|+.+.+    ..++++.+++..
T Consensus        94 -----~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~  168 (495)
T PRK14995         94 -----ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINV  168 (495)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence                 245667778899999888887777777776 433 445788888888888777766654    446788888877


Q ss_pred             HHHHHHHHHHHH
Q 013318          420 VGICVALVGILF  431 (445)
Q Consensus       420 ~~~~~~~~~~~~  431 (445)
                      .++++..+...+
T Consensus       169 ~~~~~~~~l~~~  180 (495)
T PRK14995        169 PIVLVVMGLTAR  180 (495)
T ss_pred             HHHHHHHHHHHH
Confidence            666665554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.71  E-value=9.9e-08  Score=94.24  Aligned_cols=136  Identities=13%  Similarity=0.015  Sum_probs=98.8

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+..+.+++.+.+.++..+++++.|++.||+|||+.+ ..+.++..++..  ...+.++     +..+++..++.|++.
T Consensus        25 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~-~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~l~g~~~   96 (399)
T TIGR00893        25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL-AVFIVIWGVFTG--LQAFAGA-----YVSLYILRVLLGAAE   96 (399)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee-HHHHHHHHHHHH--HHHHHcC-----HHHHHHHHHHHHHHH
Confidence            45556789999999999999999999999999998754 556555444432  2233332     345677788999999


Q ss_pred             hhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~  429 (445)
                      +...+..++++.|.+|++ ++.+++..+....+|..++..+.+.    .++.+.+.+.++..++..+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  165 (399)
T TIGR00893        97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLW  165 (399)
T ss_pred             HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence            999999999999999876 4457888888888888877666543    355666666655555544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.70  E-value=8.8e-07  Score=88.11  Aligned_cols=145  Identities=8%  Similarity=0.034  Sum_probs=93.1

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~  103 (445)
                      ++++.+.+..++....+.......+...+|.+.+....+....    ...+.+++.|++.||+|+|+.+..+.....+..
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRW  284 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            3344443433333333322223333333344544433333333    334456778999999999999998887766544


Q ss_pred             HH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHH-HHHHHhhhhhhHHHHHhh
Q 013318          104 AA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVL  181 (445)
Q Consensus       104 ~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~-~~~~lg~~iG~li~~~l~  181 (445)
                      .. ...++.+.+++..++.|++.+..++....++.+.           +++++++..+.+. .....|..+|+.+++.+.
T Consensus       285 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        285 GLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-----------PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 3567777778889999999999888877776654           2456788888876 445667789999888876


Q ss_pred             cC
Q 013318          182 KD  183 (445)
Q Consensus       182 ~~  183 (445)
                      ..
T Consensus       354 ~~  355 (382)
T PRK11128        354 QH  355 (382)
T ss_pred             Hh
Confidence            44

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.70  E-value=3.4e-07  Score=88.93  Aligned_cols=177  Identities=12%  Similarity=0.124  Sum_probs=118.1

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhcc-CCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      +.++|+++.-++-+++-.+-++...+...... +.+++...+..+-.    .-+.++++.|++.||+|.|+++.++.+++
T Consensus       249 ~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~  328 (438)
T COG2270         249 RGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVIL  328 (438)
T ss_pred             hcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHH
Confidence            44557766655555544444444444444443 56777665333222    33568899999999999999999999877


Q ss_pred             HHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHH
Q 013318          100 WLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (445)
Q Consensus       100 ~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~  178 (445)
                      .+..+. .+...-..+.+...+.|...|+.+...-+|.++..          |++|-++++|+|...-..+...||.+-.
T Consensus       329 ~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv----------p~~k~~~fFglyaltgra~S~~gp~lv~  398 (438)
T COG2270         329 SIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLV----------PKGKEGRFFGLYALTGRAASFLGPFLVA  398 (438)
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhC----------CCccccceeehhhhhhhHHHHHHHHHHH
Confidence            665543 33334444555779999999999999999999998          5678899999999988999999997765


Q ss_pred             HhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 013318          179 AVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  222 (445)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~  222 (445)
                      .+.+..+          +-|.- +....++..++.++.+++|++
T Consensus       399 v~t~iTg----------~~r~g-~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         399 VITQITG----------SSRAG-VLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHhc----------chhhH-HHHHHHHHHhhHhhEEeecCC
Confidence            5543332          12322 223334445565555566654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.68  E-value=1.1e-06  Score=89.41  Aligned_cols=139  Identities=12%  Similarity=0.110  Sum_probs=92.3

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccC--CCCccchhHHHHHHH
Q 013318          282 IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV--TSGVLGTLYPLIMAA  359 (445)
Q Consensus       282 ~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  359 (445)
                      +.+++++.++.|+..+...++.++++++.|+++||+|+|+ ++..+.++..++.+.  ..+.+  +.+   ....++..+
T Consensus        55 l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~-~l~~~~~~~~i~~~~--~~~~~~~~~~---~~~~~~~~~  128 (452)
T PRK11273         55 LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLF--MGFVPWATSS---IAVMFVLLF  128 (452)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch-hHHHHHHHHHHHHHH--HHhhhccccc---HHHHHHHHH
Confidence            3334666778999999999999999999999999999987 445666555444321  22221  111   234556667


Q ss_pred             HHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHH-HHHHhh----cchhHHHHHHHHHHHHHHHH
Q 013318          360 LLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIA-VVFFIG----PYISLQAMLIVMVVGICVAL  426 (445)
Q Consensus       360 l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~-ig~~i~----~~~~~~~~~~i~~~~~~~~~  426 (445)
                      +.|++.+...+...+.+.+.+|++ ++.+.|+++....+|.. .++.+.    ...++.+.+++.+++.++..
T Consensus       129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~  201 (452)
T PRK11273        129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA  201 (452)
T ss_pred             HHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            888888877777777888888766 45588888888877753 344332    12255666776665555443

>TIGR00897 2A0118 polyol permease family

Probab=98.67  E-value=5e-07  Score=90.56  Aligned_cols=118  Identities=14%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH-HhhccCCCCccchhHHHHHHHHHh
Q 013318          284 TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMAALLG  362 (445)
Q Consensus       284 ~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~G  362 (445)
                      +.+.+.+++|+..+.+.++..+++++.|++.||+|||+. +..+.++..++.+.. ....... +   +..+++..++.|
T Consensus        42 ~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~-l~~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~~~i~G  116 (402)
T TIGR00897        42 ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT-MMIGLLLWCVGHAAFIVFGLGHA-N---YPLILLFYGIRG  116 (402)
T ss_pred             HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHhccCc-c---HHHHHHHHHHHH
Confidence            345666789999999999999999999999999999884 456665555443211 1112111 1   234556677788


Q ss_pred             hhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHH-HHHHHhh
Q 013318          363 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASI-AVVFFIG  406 (445)
Q Consensus       363 ~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~-~ig~~i~  406 (445)
                      ++.+...+...+.+.+.+|++ ++.+.|.++...++|. .++..+.
T Consensus       117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~  162 (402)
T TIGR00897       117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS  162 (402)
T ss_pred             cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776666677777877655 5568898888888775 3555544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.67  E-value=1.7e-07  Score=93.73  Aligned_cols=175  Identities=9%  Similarity=0.065  Sum_probs=99.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHH
Q 013318          254 DVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQV  332 (445)
Q Consensus       254 ~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~  332 (445)
                      ||.++.+....++.....+.+.+.++.++.+ .+++..++|.+.+.+.++..+++++.|+++||+|||+.++ .+.+...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~-~~~~~~~   79 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLL-WIISGLL   79 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHH
Confidence            3555555443333333223333444444432 3566678999999999999999999999999999988543 3333322


Q ss_pred             HHHHH-HHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcch--
Q 013318          333 VVFLW-ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI--  409 (445)
Q Consensus       333 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~~--  409 (445)
                      +.... ....+.+..........++..++.|++.+...+...++..+..+ +++..+|..+...++|.++|..+.+..  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  158 (396)
T TIGR00882        80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR-NSNFEYGKARMFGCVGWALCASIAGILFS  158 (396)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-hcccccchhhhhcccHHHHHHHHHhhhhc
Confidence            22111 01111111000001123344566777777777766666666433 233366777777778877777666432  


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHH
Q 013318          410 -SLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       410 -~~~~~~~i~~~~~~~~~~~~~  430 (445)
                       +....+++.+++.++..+..+
T Consensus       159 ~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       159 IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             cCchHHHHHHHHHHHHHHHHHH
Confidence             556667666655555444333

>PRK10133 L-fucose transporter; Provisional

Probab=98.66  E-value=8.4e-07  Score=90.00  Aligned_cols=115  Identities=13%  Similarity=0.075  Sum_probs=87.1

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH-hhccCCCCccchhHHHHHHHHHhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      +++.++.|+....+.++..+++++.|++.||+|||+ ++..+.++..++.++.. ....++     +..+++..++.|++
T Consensus        57 ~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~-~l~~g~~~~~~~~~l~~~~~~a~~-----~~~ll~~r~l~G~g  130 (438)
T PRK10133         57 TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-GIITGLFLYALGAALFWPAAEIMN-----YTLFLVGLFIIAAG  130 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHH
Confidence            455668899999999999999999999999999997 45677777666543211 122222     34567788899999


Q ss_pred             hhhhhhhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhh
Q 013318          365 DGVLNTQLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~  406 (445)
                      .+...+..++++.+..|++++. ..+.++....+|..++..+.
T Consensus       131 ~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988876666554 57888888888888776554

>TIGR00898 2A0119 cation transport protein

Probab=98.66  E-value=7.6e-07  Score=91.96  Aligned_cols=128  Identities=14%  Similarity=0.066  Sum_probs=88.6

Q ss_pred             HHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcch--hhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccC
Q 013318           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSW--YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (445)
Q Consensus        72 ~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~--~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~  148 (445)
                      ...+.++.+++.||+|||+++.++.++.++..+.. ..++.  ...+..-++.+++.+..++....+.+|..        
T Consensus       368 ~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------  439 (505)
T TIGR00898       368 ELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY--------  439 (505)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------
Confidence            34577889999999999999999887665544432 33322  33344556677777777777778888876        


Q ss_pred             CCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc
Q 013318          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  223 (445)
Q Consensus       149 ~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~  223 (445)
                        |++.|++++|+......+|.++||.+.. +....            + ...+.+++++.+++.++.+++||++
T Consensus       440 --p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~------------~-~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       440 --PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKW------------L-FLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             --cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHH------------H-hhHHHHHHHHHHHHHHHHHcCcCCC
Confidence              4678999999999999999999998776 32211            1 2235556666666655566777644

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.66  E-value=7.9e-07  Score=90.98  Aligned_cols=181  Identities=13%  Similarity=0.010  Sum_probs=102.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhh-ccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTV-NTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      ++++.+.+..++.+..+.......|.. .++.+++...    .+.......++.++.|++.||+|+|+.+..+.....+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII  337 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            345666666666666655555555543 3445555433    23334456678899999999999999877654433322


Q ss_pred             HH--Hh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHH-hhhhhhHHHH
Q 013318          103 VA--AN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITL  178 (445)
Q Consensus       103 ~~--~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~l-g~~iG~li~~  178 (445)
                      ..  .. ..++...+++.+++.|+.........+....+..          |+++||.+.|+.....++ |..+++.+.+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----------p~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFV----------PKKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc----------chhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            11  11 2245555556777777644322222234444554          567899999999887776 6688887776


Q ss_pred             HhhcCccccccc-c-CCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          179 AVLKDDKVCAAL-L-GGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       179 ~l~~~~~~~~~~-~-~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                      .+..... +|.. + ....+|+. .|.+..++.+++.+..+++.
T Consensus       408 ~i~~~~~-~g~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        408 MIADPTK-NGTPIFGYTLTGWAG-TFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             HHhcccc-cccccccccccChHH-HHHHHHHHHHHHHHHHHHHH
Confidence            6654100 0000 0 00235643 45555556666665555553

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.66  E-value=9.8e-07  Score=90.87  Aligned_cols=175  Identities=10%  Similarity=0.067  Sum_probs=110.9

Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCC-----CCccchH
Q 013318          250 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-----PSITFIV  324 (445)
Q Consensus       250 ~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~-----g~~~~~i  324 (445)
                      +..++||...+..+.+.+|.......+..+..+.+.+.+.+++|... ..+... ++++++|.++||+     |||+.++
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~l   84 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWL   84 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCCCchHHH
Confidence            34456777666666777777665554555555555566666777752 222222 6889999999998     8887656


Q ss_pred             hHHHHHHHHHHHHHHhhcc-CCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHH
Q 013318          325 SGGAIAQVVVFLWILINYS-VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVV  402 (445)
Q Consensus       325 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig  402 (445)
                      ..+.+...++...  +.+. +..+   ...+....++.+++.+...+...++..|.+|++ ++.+.++......+|..++
T Consensus        85 l~~~i~~~~~~~~--~a~~~~~~~---l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg  159 (491)
T PRK11010         85 LATQLLLLVAIAA--MGFLEPGTQ---LRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS  159 (491)
T ss_pred             HHHHHHHHHHHHH--HHHcCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence            5665555444322  2222 2222   234555677778888888888889999999855 4446777777777776665


Q ss_pred             HHhh----c-chhHHHHHHHHHHHHHHHHHHHHH
Q 013318          403 FFIG----P-YISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       403 ~~i~----~-~~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      ..+.    . ..++...+++.+++.++..+..++
T Consensus       160 ~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        160 GGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            4332    3 346777777777766665554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.64  E-value=3.5e-07  Score=92.95  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=97.3

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhh
Q 013318          289 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  368 (445)
Q Consensus       289 ~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  368 (445)
                      ..+.+.+.+.+.++..+++++.|+++||+|||+. +..+.++..++.++  ....++..  ....+++..++.|++.+..
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~r~l~G~~~~~~  144 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS-LLIIALLFVIGAIL--MGLAAFAL--SVEMLIVGRVLLGIGVGIA  144 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH-HHHHHHHHHHHHHH--HHHhcccc--chHHHHHHHHHHHhhhhHH
Confidence            5678899999999999999999999999999874 45555555444322  11222211  0235667888899999999


Q ss_pred             hhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhh---c----chhHHHHHHHHHHHHHHHHHHH
Q 013318          369 NTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIG---P----YISLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       369 ~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~---~----~~~~~~~~~i~~~~~~~~~~~~  429 (445)
                      .+...+++++.+|+++ +.+.++++....+|..+++.+.   .    ..++.+.+.+.+...++..+..
T Consensus       145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       145 SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            8888999999998764 4578898888889988888776   2    3456666766555544444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.64  E-value=5.7e-07  Score=91.26  Aligned_cols=167  Identities=13%  Similarity=0.120  Sum_probs=103.4

Q ss_pred             HHHHHHHHHH--HHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhcccc----CCCCccchHhHHHHHHHHHHHH
Q 013318          264 FAYSGLQQAF--VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTT----GLPSITFIVSGGAIAQVVVFLW  337 (445)
Q Consensus       264 ~~~~g~~~~f--~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d----~~g~~~~~i~~g~~~~~~~~~~  337 (445)
                      ....|++.++  ..+..++++.+-+.+...++.+.....+..++.+++.|+++|    |+|||++++..+.....+++. 
T Consensus        11 ~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~-   89 (477)
T TIGR01301        11 SVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVI-   89 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHH-
Confidence            3445555433  223333333333455567888888999999999999999999    599999876666655555543 


Q ss_pred             HHhhccCCCC----------ccch--hHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch---hhHHHHHHHHHHHHHHH
Q 013318          338 ILINYSVTSG----------VLGT--LYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE---GAFAQLKVWQCASIAVV  402 (445)
Q Consensus       338 ~~~~~~~~~~----------~~~~--~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~---~a~~~~~~~~~~g~~ig  402 (445)
                       ++.+.++..          ....  ....+...++.++....++...++++|+.|++++   .++++.+....+|..+|
T Consensus        90 -ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg  168 (477)
T TIGR01301        90 -LIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLG  168 (477)
T ss_pred             -HHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence             223332210          0000  1122333344556666777778999999997643   37888888888888887


Q ss_pred             HHhhcch-------------------hHHHHHHHHHHHHHHHHHHHHHH
Q 013318          403 FFIGPYI-------------------SLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       403 ~~i~~~~-------------------~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      +.+....                   ++...|++.+++++++.....+.
T Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~  217 (477)
T TIGR01301       169 YAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSA  217 (477)
T ss_pred             HHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeee
Confidence            7654321                   45666777666666666555443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.63  E-value=2.4e-05  Score=71.53  Aligned_cols=320  Identities=14%  Similarity=0.082  Sum_probs=154.0

Q ss_pred             HhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhhhcchhhHHhHHHHhhhhhHHhhhhh-hhHHHHhhhhhhhccCCCcc
Q 013318           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGE-GTYLTAAALSHASNHKLHEG  152 (445)
Q Consensus        74 i~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~~~~~~~li~~r~l~Gig~g~~~~~~-~~~i~~~~~~~~~~~~~~~~  152 (445)
                      +...+.|.+.||.|||+..+.-++.|.+..+.--.|.+-.++++|++.|+..+.++.+. .-+++|+-+           
T Consensus        87 LFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne-----------  155 (454)
T KOG4332|consen   87 LFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE-----------  155 (454)
T ss_pred             HHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh-----------
Confidence            44567889999999999776555444333333346889999999999999999998884 345555532           


Q ss_pred             chhhhhhhHHHHH--------HHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc
Q 013318          153 TVIGSFNGEFWGM--------FASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  224 (445)
Q Consensus       153 ~~rg~~~g~~~~~--------~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~  224 (445)
                       +|+.---+....        ..+=.++.++.+..+.....         .|.-. .|-...  +++++...+.+++=.+
T Consensus       156 -kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s---------lGPVA-PFdAAa--cfLaigmAvil~~W~E  222 (454)
T KOG4332|consen  156 -KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS---------LGPVA-PFDAAA--CFLAIGMAVILSSWSE  222 (454)
T ss_pred             -ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc---------cCCCC-chHHHH--HHHHHHHHHHHhhhhh
Confidence             222111111111        11222223333322221111         12211 232222  2222222222332111


Q ss_pred             cCcccccccchhhhhHHHHHHHH-HHHhhccchhHHHHHHH-HHHHHHHHHHHhhhcccccccccc--cc--hhHHHHHH
Q 013318          225 KGEKETADASVNFYSYLVSLSKS-ITTLLADVRMLLIIPLF-AYSGLQQAFVWAEFTKEIVTPALG--VS--GVGGAMAV  298 (445)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~-~~~g~~~~f~~~~~~~~~~~~~~~--~~--~~g~~~~~  298 (445)
                      +- .|.+     ++++.....+. ...+..|+|+.++...- .+-|....|..-|      +..++  ..  .-|++++.
T Consensus       223 Ny-gdps-----~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLW------TPaLspn~e~iPhGfiFat  290 (454)
T KOG4332|consen  223 NY-GDPS-----ENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLW------TPALSPNDEEIPHGFIFAT  290 (454)
T ss_pred             cc-CChh-----hhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeee------cccCCCCcccCCchhHHHH
Confidence            00 0000     01111111211 12245677776554321 1112111121111      22233  22  35788899


Q ss_pred             HHHHHHHHHhhhhccccCCCCc-cchHhHHHHHHHHHHHH-HHhh-ccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHH
Q 013318          299 YGAFDAICSLAAGRLTTGLPSI-TFIVSGGAIAQVVVFLW-ILIN-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL  375 (445)
Q Consensus       299 ~~i~~~~g~~~~G~l~d~~g~~-~~~i~~g~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  375 (445)
                      +-+++++|+-+..|+..|-..| .....+..+...+.+.+ ++.. ..|+.+  .+..-++.+.++-.+.+.++|.+.-+
T Consensus       291 FMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~ke--s~~~s~i~F~~~E~cvGlfwPSimkm  368 (454)
T KOG4332|consen  291 FMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKE--SPSESLIGFCLFEACVGLFWPSIMKM  368 (454)
T ss_pred             HHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcC--CchHHHHHHHHHHHHHhhcchHHHHH
Confidence            9999999999988876654322 11222333332222211 1111 223322  13445677778888899999998888


Q ss_pred             HHhhccCCch-hhHHHHHHHHHHHHHHHHHh--hc--chhHHHHHHHHHHHHHHHHHHHHH
Q 013318          376 LGILFKHDTE-GAFAQLKVWQCASIAVVFFI--GP--YISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       376 l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i--~~--~~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      =.+..|++.+ +++-.++.=...-.+++...  ..  -..-+.++.++-+....+.+....
T Consensus       369 RsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~~~  429 (454)
T KOG4332|consen  369 RSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQRR  429 (454)
T ss_pred             HHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHHHH
Confidence            8888887644 23333333223333333211  11  123456677766666666554433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.63  E-value=3.9e-07  Score=93.47  Aligned_cols=137  Identities=11%  Similarity=0.020  Sum_probs=88.9

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++.++.+.+.+.+.++..++.++.|+++||+|||+. +..+.++..++.+  ...+.++     +..+++..++.|++.
T Consensus        67 gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~-~~~~~~~~~~~~~--~~~~~~s-----~~~l~~~r~l~G~~~  138 (476)
T PLN00028         67 NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG-SAFLLMLTAPAVF--CMSLVSS-----ATGFIAVRFFIGFSL  138 (476)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHH--HHHHhcC-----HHHHHHHHHHHHHHH
Confidence            4555577888888889999999999999999999874 4455555444432  2233332     234555667788887


Q ss_pred             hhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc-------------hhHHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY-------------ISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~-------------~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      +...+ ...++++.+|++ ++.+.|+.+....+|..++..+.+.             .++.+.+++.+++.++..+...+
T Consensus       139 ~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        139 ATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            76543 456788999865 5568888877766666555333221             24666777777666555444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.63  E-value=5.2e-09  Score=107.99  Aligned_cols=257  Identities=16%  Similarity=0.105  Sum_probs=3.0

Q ss_pred             hhhhhccCCCCchHHHHHHHHHHHHhhh----hHHHHHHHhCcchhhhhhhHHHHHHHHHhhhc----------------
Q 013318           50 LETTVNTEGNLGTISLGILYTSFTCFSL----VASLVVRVLGSKNALILGTTGYWLFVAANLFP----------------  109 (445)
Q Consensus        50 ~~~~i~~~~~~g~~~~~~~~~~~ai~~l----~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~~~----------------  109 (445)
                      ..+++.+..++.....+.+..++=+++.    +..++.+|-.|-|.+..|.++.++..+.+..|                
T Consensus        25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~  104 (539)
T PF03137_consen   25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSN  104 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccc
Confidence            3445666678888877887777755554    45556666555556666665554433321100                


Q ss_pred             -----------------------------------chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccch
Q 013318          110 -----------------------------------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTV  154 (445)
Q Consensus       110 -----------------------------------~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~  154 (445)
                                                         -+..++++.+++|+|.+++|+..-+|+.|+.          ++++
T Consensus       105 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv----------~~~~  174 (539)
T PF03137_consen  105 GNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV----------SKKN  174 (539)
T ss_dssp             -----------------------------------------------SSS------------------------------
T ss_pred             cccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc----------cccc
Confidence                                               0456778999999999999999999999998          4677


Q ss_pred             hhhhhhHHHHHHHHhhhhhhHHHHHhhcCc---cc-c----cccc-CC-CCC-cchhHHHHHHHHHHHHHHHHHhccCCc
Q 013318          155 IGSFNGEFWGMFASHQFVGNLITLAVLKDD---KV-C----AALL-GG-STS-GTTLLFIVFLGVITLGTILMCFLRKEE  223 (445)
Q Consensus       155 rg~~~g~~~~~~~lg~~iG~li~~~l~~~~---~~-~----~~~~-~~-~~~-w~~~~~~i~~~l~~~~~~l~~~l~~~~  223 (445)
                      -+.+.|+.++...+|+++|-++++......   .. +    +-.+ +. +.| || .-|++.+++.++..+.++++|+.-
T Consensus       175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWW-LGfli~g~~~~l~aipl~~FPk~l  253 (539)
T PF03137_consen  175 SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWW-LGFLICGILLFLSAIPLFFFPKKL  253 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHH-HHHHHHHHHHHHHHHHHHcCCccC
Confidence            889999999999999999988887655321   10 0    0001 10 112 43 334444444444444344555321


Q ss_pred             ccC-----cc-----ccc---ccchhh-------hhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 013318          224 DKG-----EK-----ETA---DASVNF-------YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  283 (445)
Q Consensus       224 ~~~-----~~-----~~~---~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~  283 (445)
                      +..     ++     +.+   +++..+       ....++.++..+++++||-+...........+...-+.+..|+++ 
T Consensus       254 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKyl-  332 (539)
T PF03137_consen  254 PGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYL-  332 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            111     00     000   000000       112344456677788888877665433222221111223345543 


Q ss_pred             cccccc--chhHHHHHH-HHHHHHHHHhhhhccccCCC
Q 013318          284 TPALGV--SGVGGAMAV-YGAFDAICSLAAGRLTTGLP  318 (445)
Q Consensus       284 ~~~~~~--~~~g~~~~~-~~i~~~~g~~~~G~l~d~~g  318 (445)
                      +..++.  +...++... .-.+.++|.+++|.+.+|++
T Consensus       333 E~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k  370 (539)
T PF03137_consen  333 ESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK  370 (539)
T ss_dssp             --------------------------------------
T ss_pred             HHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence            444443  344444433 23355688888999998874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00895 2A0115 benzoate transport

Probab=98.62  E-value=5.5e-07  Score=89.27  Aligned_cols=140  Identities=11%  Similarity=0.004  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh
Q 013318           31 HILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN  106 (445)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~  106 (445)
                      +.+.+..++....+.......|.+.++.+.+...    .+.......++.++.+++.||+|+|+.+..............
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  332 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVG  332 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            3333444443334333334444444444444332    233334456788899999999999954443332222222222


Q ss_pred             -hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          107 -LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       107 -~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                       ..++....+...++.|++.+..++...+++.+..          |+++||+++|+......+|..+||.+.+.+
T Consensus       333 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       333 STLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY----------PTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence             2455555666788999999998888888888886          567899999999999999999999887643

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.61  E-value=1.3e-07  Score=93.11  Aligned_cols=134  Identities=14%  Similarity=0.115  Sum_probs=94.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+..+.|++.+...++..+++++.|+++||+|||+. +..+.++..++.++  ..+.++     ....++..++.|++.
T Consensus        26 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~g~~~   97 (379)
T TIGR00881        26 GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF-LPIGLILCAIVNLF--FGFSTS-----LWVMAALWALNGIFQ   97 (379)
T ss_pred             CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh-hHHHHHHHHHHHHH--HHHhhh-----HHHHHHHHHHHHhhc
Confidence            4556678999999999999999999999999999874 45666655554332  233332     245667788889999


Q ss_pred             hhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHH-Hhh----cchhHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVF-FIG----PYISLQAMLIVMVVGICVALV  427 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~-~i~----~~~~~~~~~~i~~~~~~~~~~  427 (445)
                      +...+..++++.+.+|+++ +.+.++.+....+|..++. .+.    ...+..+.+.+.+++.++..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (379)
T TIGR00881        98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL  165 (379)
T ss_pred             cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            9888999999999998764 4577877777777776665 232    333555666665555444433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.61  E-value=6.8e-07  Score=87.96  Aligned_cols=113  Identities=17%  Similarity=0.242  Sum_probs=79.0

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++..+.+++.....++.++++++.|+++||+|||+. +..+.++..++.++  ..+.+. +   +..+++..++.|++.
T Consensus        33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~~--~~~~~~-~---~~~~~~~~~~~g~~~  105 (366)
T TIGR00886        33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT-TTLSLLLLAIPCLW--AGLAVQ-S---YSVLLLLRLFIGIAG  105 (366)
T ss_pred             CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHH--HHHHhh-h---HHHHHHHHHHHHHhc
Confidence            4555678899999999999999999999999999874 45666665555432  233331 1   245566677788886


Q ss_pred             hhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhh
Q 013318          366 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~  406 (445)
                      +.. +...+++++.+|++ ++.+.+++.....+|..++..+.
T Consensus       106 ~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  146 (366)
T TIGR00886       106 GSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM  146 (366)
T ss_pred             hhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            654 45678889999865 45578888766666766655444

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.60  E-value=4.9e-07  Score=91.17  Aligned_cols=124  Identities=12%  Similarity=-0.056  Sum_probs=90.4

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +.+..+.++..+.+.++..+++++.|++.||+|||+. +..+.++..++.+  ...+.++     ...+++..++.|++.
T Consensus        49 ~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~--~~~~~~~-----~~~l~~~r~l~G~g~  120 (426)
T PRK12307         49 GLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL-MMWSIVAYSVGTG--LSGLASG-----VIMLTLSRFIVGMGM  120 (426)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHH--HHHHHhH-----HHHHHHHHHHHHHHH
Confidence            3445578888889999999999999999999999874 4566665555433  1233332     245677788899999


Q ss_pred             hhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIV  417 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i  417 (445)
                      +...+....++.|.+|+++ +.+.++++....+|..++..+.+.    .++.+.+.+
T Consensus       121 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            9888888999999998774 457888888888887777655432    355555554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.57  E-value=9.7e-07  Score=100.34  Aligned_cols=113  Identities=15%  Similarity=0.082  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH-HhhccCCCCccchhHHHHHHHHHhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      ..+++.+++.++..+++++.|+++||+|||+. +..+.++..+..++. +....++     ...+++..++.|++.+...
T Consensus        48 ~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~-l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~r~l~G~~~~~~~  121 (1146)
T PRK08633         48 LTAIVNALFLLPFLLLSSPAGFLADKFSKNRV-IRIVKLFEVGLTLLIVLAYYLGW-----FWLAFAVTFLLGAQSAIYS  121 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHcc-----HHHHHHHHHHHHHHHHhhc
Confidence            45777888999999999999999999999874 445544433322211 1112221     2456777888999999999


Q ss_pred             hhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch
Q 013318          370 TQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       370 ~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~  409 (445)
                      +..++++++.+|+++ +.++|++.....+|..+|..+.+.+
T Consensus       122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l  162 (1146)
T PRK08633        122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFL  162 (1146)
T ss_pred             hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764 4588998888888888877666543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.57  E-value=2.1e-06  Score=78.86  Aligned_cols=145  Identities=14%  Similarity=0.134  Sum_probs=99.1

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhccC-CCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      .....++++.+.+++++.+......+.|.+..+ .+++..+    .+..|...++..++.|.++||+|++...+.+..+.
T Consensus       261 ~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~  340 (459)
T KOG4686|consen  261 TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL  340 (459)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence            355567778788888888876666666665443 5665543    57778888889999999999999999988887654


Q ss_pred             HHHH-HHhhhcchhhHHhHHHHhhhhhHH----hhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhh
Q 013318          100 WLFV-AANLFPSWYTMVPASLYLGFAASI----IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (445)
Q Consensus       100 ~~~~-~~~~~~~~~~li~~r~l~Gig~g~----~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~  174 (445)
                      .+.. ...+.+-+. =+++-.++|...+.    .||...    ...          ||++.|.+.|..++..++|..+-+
T Consensus       341 tl~~H~~l~Ft~ls-Py~~m~~lGLsysllAcslWP~va----~~v----------pE~qLGTaygf~qsIqNLgla~i~  405 (459)
T KOG4686|consen  341 TLLGHSGLFFTFLS-PYTSMTFLGLSYSLLACSLWPCVA----SLV----------PEEQLGTAYGFIQSIQNLGLAFIP  405 (459)
T ss_pred             HHHHhhhHHhhhcc-HHHHHHHHhhhHHHHHHHHhhhhh----hhC----------CHHHhcchHHHHHHHHhhhhhHHh
Confidence            3321 111111111 12244677776554    555543    333          567899999999999999999999


Q ss_pred             HHHHHhhcCc
Q 013318          175 LITLAVLKDD  184 (445)
Q Consensus       175 li~~~l~~~~  184 (445)
                      .++..+..+.
T Consensus       406 Iiag~i~d~~  415 (459)
T KOG4686|consen  406 IIAGFIADGD  415 (459)
T ss_pred             hhhheeecCC
Confidence            9888776443

>TIGR00896 CynX cyanate transporter

Probab=98.56  E-value=7.3e-07  Score=87.64  Aligned_cols=114  Identities=17%  Similarity=0.067  Sum_probs=84.6

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      .+.+.++.|+..+.+.++..+++++.|+++||+|+|+. +..+.++..++.+  .. ..++     ...+++..++.|++
T Consensus        30 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~--~~-~~~~-----~~~l~~~~~~~g~g  100 (355)
T TIGR00896        30 LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS-VAAGLLLIAAGIL--IR-SAPG-----TALLFAGTALIGVG  100 (355)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH-HHHHHHHHHHHHH--HH-Hhcc-----HHHHHHHHHHHHHH
Confidence            34566688999999999999999999999999999874 4566555444432  12 2222     24456677788998


Q ss_pred             hhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhc
Q 013318          365 DGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGP  407 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~  407 (445)
                      .+...+..++++.+.+|++++.+.+.++..+.+|..++..+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  143 (355)
T TIGR00896       101 IAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATV  143 (355)
T ss_pred             HHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887778888888988876667889888888888877665543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.55  E-value=1.1e-06  Score=90.53  Aligned_cols=125  Identities=10%  Similarity=-0.044  Sum_probs=89.8

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++..+.+.....+.++.+++.++.|++.||+|||+. +..+.++..++.+  ...+.++     +..+++..++.|++.
T Consensus        51 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~--~~~~~~~-----~~~l~~~~~l~G~~~  122 (496)
T PRK03893         51 GLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA-MVISIVLFSVGTL--ACGFAPG-----YWTLFIARLVIGMGM  122 (496)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHH--HHHHHhH-----HHHHHHHHHHHHHHH
Confidence            4455578888888999999999999999999999874 4556555544433  2233322     245667788889998


Q ss_pred             hhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGP----YISLQAMLIVM  418 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~----~~~~~~~~~i~  418 (445)
                      +...+...+++.+.+|++++ .+.+.++....+|..+++.+.+    ..++.+.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~  180 (496)
T PRK03893        123 AGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            88888888999999987644 5788888888888777765553    33555555543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.55  E-value=3.5e-06  Score=85.03  Aligned_cols=111  Identities=8%  Similarity=0.012  Sum_probs=77.3

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhcc-C--CCCccchhHHHHHHHHHh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYS-V--TSGVLGTLYPLIMAALLG  362 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~G  362 (445)
                      +++.++.++..+.+.++..++++..|++.||+|.|+.. ..+.++..+...  +..+. +  .++   +..++++.++.|
T Consensus        66 ~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~-~~~~ll~~i~~~--~~~~a~~~~~~s---~~~lli~r~l~G  139 (462)
T PRK15034         66 NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT-VFSTAILIIPCV--WLGIAVQNPNTP---FGIFIVIALLCG  139 (462)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHH--HHHHHHcccCCC---HHHHHHHHHHHH
Confidence            45556789888999999999999999999999998744 455544443322  22222 1  112   456778888999


Q ss_pred             hhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHH
Q 013318          363 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       363 ~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~  403 (445)
                      ++ +...+.....+++.+|++ ++.+.|++....++|..++.
T Consensus       140 ig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        140 FA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            97 556677888899999876 66688888655556655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.54  E-value=3.6e-06  Score=83.17  Aligned_cols=147  Identities=12%  Similarity=0.080  Sum_probs=94.4

Q ss_pred             hhccCCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH-HHhhhcchhhHHhHHHHhhhhhHH
Q 013318           53 TVNTEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGTTGYWLFV-AANLFPSWYTMVPASLYLGFAASI  127 (445)
Q Consensus        53 ~i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~-~~~~~~~~~~li~~r~l~Gig~g~  127 (445)
                      ...++.+.|+...+....    ..++.-.++|++.+|+|.|+.++++..+.++=. ...+.++.+.+.+.+.++|+..+.
T Consensus       249 ~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l  328 (412)
T PF01306_consen  249 SFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPL  328 (412)
T ss_dssp             HTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            334444444443333332    344556689999999999999999998877743 345788888999999999999999


Q ss_pred             hhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHH-HHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHH
Q 013318          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEF-WGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFL  206 (445)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~-~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~  206 (445)
                      ...+...|+++..+          ++-.++...+. +...++|.++.+.+++.+..+.+           - +..|.+.+
T Consensus       329 ~lva~fkYI~~~fd----------~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-----------~-~~tylimg  386 (412)
T PF01306_consen  329 LLVAAFKYITAHFD----------KRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-----------F-QHTYLIMG  386 (412)
T ss_dssp             HHHHHHHHHHHHS-----------GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHH
T ss_pred             HHHHHHHHHHHhCC----------HhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-----------c-HHHHHHHH
Confidence            99999999999973          33334444442 34456666666666666654332           1 23466666


Q ss_pred             HHHHHHHHHHHh-ccC
Q 013318          207 GVITLGTILMCF-LRK  221 (445)
Q Consensus       207 ~l~~~~~~l~~~-l~~  221 (445)
                      .+.++..++..+ +++
T Consensus       387 ~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  387 LIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHheeeecC
Confidence            665555555544 444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.53  E-value=3.7e-07  Score=76.05  Aligned_cols=126  Identities=16%  Similarity=0.116  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHH
Q 013318          297 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALL  376 (445)
Q Consensus       297 ~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l  376 (445)
                      ..++++..+++++.|++.||++||+.+ ..+.....++.+  ...+.++     .....+..++.|++.+...+..++++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~-~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~   76 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVL-LVGLFIFVLSTA--MFALSSN-----ITVLIIARFLQGFGAAFALVAGAALI   76 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHH-HHHHHHHHHHHH--HHHHhcc-----HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            345677889999999999999988754 455554444432  1223322     24556677888999888888889999


Q ss_pred             HhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHH
Q 013318          377 GILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       377 ~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      .|.+|++ ++.+.+..+....+|..++..+.+..    ++.+.+.+.....+++.+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            9999876 44578888888888887776665433    445556665555555544443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.52  E-value=1.2e-06  Score=86.63  Aligned_cols=144  Identities=13%  Similarity=-0.064  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHhhhHhhhhhhc-cCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH-
Q 013318           30 VHILSCAFLLIFLAYGAAQNLETTVN-TEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV-  103 (445)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~-  103 (445)
                      ++...+..++....+.......|.+. ++.+.+....    ........++.++.|++.||+|+|+.+..+..+..+.. 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  300 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV  300 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            44443444444444444444444433 3344443332    22333456677889999999999998876554333221 


Q ss_pred             -HH-hh--hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHH-HHHHHHhhhhhhHHHH
Q 013318          104 -AA-NL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEF-WGMFASHQFVGNLITL  178 (445)
Q Consensus       104 -~~-~~--~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~-~~~~~lg~~iG~li~~  178 (445)
                       .. ..  .++...++...++.|++.+..++...+++.|..          |+++|+++.|+. .....+|..+||.+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       301 PLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELF----------PTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhC----------CccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence             11 11  245555666778889988888888888888887          467899999984 4445678888998887


Q ss_pred             HhhcC
Q 013318          179 AVLKD  183 (445)
Q Consensus       179 ~l~~~  183 (445)
                      .+..+
T Consensus       371 ~l~~~  375 (394)
T TIGR00883       371 ALVAM  375 (394)
T ss_pred             HHHHH
Confidence            77654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.52  E-value=4.9e-07  Score=92.19  Aligned_cols=145  Identities=10%  Similarity=0.039  Sum_probs=92.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHHHH----HHhhhhHHHHHHHh--Ccchhhhhhh--HHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF----TCFSLVASLVVRVL--GSKNALILGT--TGY   99 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~----ai~~l~~g~l~dr~--G~k~~l~~g~--~~~   99 (445)
                      ++++...+..++...++.......+...++.+.+....+......    .+++++.+++.||.  ++|+...++.  +..
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            444444444444444443333333444344555554444443333    34556688999973  3444444333  222


Q ss_pred             HHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHH
Q 013318          100 WLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (445)
Q Consensus       100 ~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~  178 (445)
                      .+..+. ...+++..+++.+++.|++.+..++...+++.+..          +++++|+.+|++....++|..+||.+.+
T Consensus       321 ~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~~~lg~~igp~i~G  390 (455)
T TIGR00892       321 GLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLV----------GAQRFSSAVGLVTIVECCAVLIGPPLAG  390 (455)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh----------hHHHHhhHHhHHHHHHHHHHHcccccee
Confidence            222222 24567777888899999999998888888888876          4678999999999999999999998887


Q ss_pred             Hhhc
Q 013318          179 AVLK  182 (445)
Q Consensus       179 ~l~~  182 (445)
                      .+..
T Consensus       391 ~l~~  394 (455)
T TIGR00892       391 RLVD  394 (455)
T ss_pred             eeeh
Confidence            6653

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.51  E-value=2.1e-06  Score=86.78  Aligned_cols=110  Identities=10%  Similarity=-0.104  Sum_probs=80.1

Q ss_pred             HHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hh-cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhcc
Q 013318           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (445)
Q Consensus        70 ~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~-~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~  147 (445)
                      ....++.++.+++.||+|+|+++.++..+..+..... .. ++...+++..++.|++.+...+...+++++..+.+..  
T Consensus       268 i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--  345 (437)
T TIGR00792       268 VAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEW--  345 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--
Confidence            3445677889999999999999999887665544332 22 3555566677888999998888888888877642111  


Q ss_pred             CCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhc
Q 013318          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (445)
Q Consensus       148 ~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~  182 (445)
                       +.+++++|.++|++..+..+|..+|+.+.+.+..
T Consensus       346 -~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       346 -KTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             -hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1124568999999999999999999988776653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.51  E-value=7.4e-07  Score=87.60  Aligned_cols=128  Identities=14%  Similarity=0.025  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHHH-----HHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHH
Q 013318           30 VHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTS-----FTCFSLVASLVVRVLGSKNALILGTTGYWLFVA  104 (445)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~-----~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~  104 (445)
                      ++.+.+..++...++.......+....+.+.+....+.....     ..++.+++|++.||+|+|+.+..+.++..+...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~  290 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNA  290 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444433456665554444432     236778899999999999999888876655433


Q ss_pred             Hh-h-h----------cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHH
Q 013318          105 AN-L-F----------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA  167 (445)
Q Consensus       105 ~~-~-~----------~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~  167 (445)
                      .. . .          ++...++...++.|++.+..++...+++.+.+          |+++||+.+|++++..+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       291 GFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLS----------NPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHHh
Confidence            22 2 1          34456667788999999999999999999987          58899999999876543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.50  E-value=4.4e-06  Score=81.78  Aligned_cols=169  Identities=17%  Similarity=0.100  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHH
Q 013318          258 LLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW  337 (445)
Q Consensus       258 ~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~  337 (445)
                      +.+....|..|.......+..|+.-.+-+.+....|...+.|+++.++++++...+.||+.||+ +++..+.+..++-++
T Consensus        16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~-lLl~~l~lFi~~n~l   94 (394)
T COG2814          16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRR-LLLGLLALFIVSNLL   94 (394)
T ss_pred             HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHHHHHHHHH
Confidence            3333334444433323334444432222344457899999999999999999999999999887 444444444444332


Q ss_pred             HHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHH----HHHhhcchhHH
Q 013318          338 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAV----VFFIGPYISLQ  412 (445)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~i----g~~i~~~~~~~  412 (445)
                        ....++     +..+++.-++.|+.-+..++...++..++.|+++ +++.++......++..+    |..++...+++
T Consensus        95 --~alAp~-----f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR  167 (394)
T COG2814          95 --SALAPS-----FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR  167 (394)
T ss_pred             --HHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence              233443     4678888999999999999999999999998765 46888877777766555    45666777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013318          413 AMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       413 ~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                      ..|....++.++..+.......
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC
Confidence            8888888777777665554433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.49  E-value=2.8e-08  Score=97.20  Aligned_cols=138  Identities=13%  Similarity=0.130  Sum_probs=106.1

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++.+..|++..++.+..++.+++.|++.||+.|+. ++.+|..+...+.+  ...+.  ..   .+.+.++-.+.|+|.
T Consensus        64 ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~-v~~vG~~iW~~Av~--~~~fs--~~---Fwq~~l~R~~vGiGe  135 (493)
T KOG1330|consen   64 NISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR-VIAVGIFIWTLAVF--ASGFS--NH---FWQVLLCRGFVGIGE  135 (493)
T ss_pred             CCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce-EEeeHHHHHHHHHH--HHHHH--HH---HHHHHHHHHHhccch
Confidence            355677889999999999999999999999998876 56788877665532  22333  12   356778899999999


Q ss_pred             hhhhhhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIGPYI-----SLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~~~~-----~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      +...|..+++++|++|+++++ .++++++....|..+|++++...     .+.|.+...+++.++..++.+.
T Consensus       136 As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  136 ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFL  207 (493)
T ss_pred             hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHh
Confidence            999999999999999988665 79999999999999998877543     2555676666665555554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.49  E-value=1.5e-06  Score=86.09  Aligned_cols=137  Identities=13%  Similarity=0.045  Sum_probs=90.5

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++.++.|++.+.+.++.+++++..|+++||+|||+ ++..+......+..  .....++     ...+++.-++.|++.
T Consensus        22 ~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~-~~~~~~~~~~~~~~--~~~~~~~-----~~~l~~~R~l~G~g~   93 (368)
T TIGR00903        22 DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW-FLFGSLATFAAAAG--RLLDPFN-----YEWLLACQLLAALGQ   93 (368)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHH--HHHHhcc-----HHHHHHHHHHHHhHh
Confidence            345567889989999999999999999999999876 43333222222211  1111122     345677788889988


Q ss_pred             hhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      +... ...+.+++.+|++++ .+.++.+....+|..++..+.+.    .+.++.+.+.+++.++..+...+
T Consensus        94 ~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903        94 PFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            7643 444556888886644 57898888888888777655544    36677777766665555444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09952 shikimate transporter; Provisional

Probab=98.48  E-value=1.1e-05  Score=81.97  Aligned_cols=130  Identities=10%  Similarity=-0.012  Sum_probs=80.4

Q ss_pred             HHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h---h-cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhc
Q 013318           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L---F-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (445)
Q Consensus        72 ~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~---~-~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~  146 (445)
                      ..++.++.|+++||+|||+++..+.++..+..... .   . ++...++..-++.|++.+..++...++++|..      
T Consensus       299 ~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~------  372 (438)
T PRK09952        299 SCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMF------  372 (438)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
Confidence            34567789999999999999888765443322211 1   1 22334344556668888887877788888887      


Q ss_pred             cCCCccchhhhhhhHHHHH-HHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 013318          147 HKLHEGTVIGSFNGEFWGM-FASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRK  221 (445)
Q Consensus       147 ~~~~~~~~rg~~~g~~~~~-~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~  221 (445)
                          |.+.|+...|+.+.. ..+|+.++|.+...+....+         .+|+ ..+....++.+++.+..+.+++
T Consensus       373 ----p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~---------~~~~-~~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        373 ----GASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG---------GSWH-SVAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             ----CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCch-HHHHHHHHHHHHHHHHHHHccc
Confidence                456788888875433 34677778877766643221         1343 2333344445555555555654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=4.5e-07  Score=87.18  Aligned_cols=139  Identities=14%  Similarity=0.131  Sum_probs=111.1

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhh
Q 013318          289 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  368 (445)
Q Consensus       289 ~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  368 (445)
                      .+++|.+++...+.+.+.+++.|.+.||+|+|.++ ++|++.....-+  +..+..+     +.++++.-.+-|+|+++.
T Consensus       105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm-~~Gl~vmf~sTi--lFafg~s-----y~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen  105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPM-VAGLFVMFLSTI--LFAFGNS-----YPMLFVARSLQGVGSAFA  176 (464)
T ss_pred             ccchhHHHHHHHHHHHHhcccchhhHHHhccccHH-HHHHHHHHHHHH--HHHHcch-----hHHHHHHHHHhhhhHHHH
Confidence            35789999999999999999999999999999765 678766554422  2344432     357888999999999999


Q ss_pred             hhhhhHHHHhhccCCc--hhhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          369 NTQLSALLGILFKHDT--EGAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGILFLTIQ  435 (445)
Q Consensus       369 ~~~~~~~l~~~~~~~~--~~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~  435 (445)
                      .+.-.+++++.||+|.  ++++|+.-.+.++|..+|+-+++.    .+.+..|.++++++++...+-+++...
T Consensus       177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence            9999999999999875  457888777778888887766654    478899999999999888877766443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.46  E-value=8e-06  Score=81.57  Aligned_cols=101  Identities=16%  Similarity=0.244  Sum_probs=78.4

Q ss_pred             HhhhhHHHHHHHhCcchhhhhhhHHHHH-HHHH-hhhcchhhH----HhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhcc
Q 013318           74 CFSLVASLVVRVLGSKNALILGTTGYWL-FVAA-NLFPSWYTM----VPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (445)
Q Consensus        74 i~~l~~g~l~dr~G~k~~l~~g~~~~~~-~~~~-~~~~~~~~l----i~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~  147 (445)
                      ..-.+++++.+|+|.|+++.++.+.+.+ +..- ...++.+..    +..-.++|+.-+..+.+...|+.+..       
T Consensus       258 ~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~-------  330 (400)
T PF03825_consen  258 PFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA-------  330 (400)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC-------
Confidence            3445789999999999999999988776 3332 232443322    23346799999999999999999987       


Q ss_pred             CCCccchhhhhhhHHHHH-HHHhhhhhhHHHHHhhcCc
Q 013318          148 KLHEGTVIGSFNGEFWGM-FASHQFVGNLITLAVLKDD  184 (445)
Q Consensus       148 ~~~~~~~rg~~~g~~~~~-~~lg~~iG~li~~~l~~~~  184 (445)
                         |++.|+++-|++.+. .++|..+|+++++.+.++.
T Consensus       331 ---p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~  365 (400)
T PF03825_consen  331 ---PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF  365 (400)
T ss_pred             ---CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence               578899999998775 5799999999999887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.46  E-value=1.4e-06  Score=89.17  Aligned_cols=140  Identities=12%  Similarity=-0.018  Sum_probs=93.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhcc-----C--CCCccchhHHHHHHH
Q 013318          287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYS-----V--TSGVLGTLYPLIMAA  359 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~  359 (445)
                      .+..+.+++.+.+.++.++++++.|+++||+|||+.+ ..+.++..++.+.  ..++     +  .++......+++.-+
T Consensus        52 ~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~-~~~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~R~  128 (479)
T PRK10077         52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL-KIAAVLFFISALG--SAWPEFGFTSIGPDNTGYVPEFVIYRI  128 (479)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHH--HHhhccccccccccchhHHHHHHHHHH
Confidence            3445778889999999999999999999999999854 5555554443221  1111     0  011000123456778


Q ss_pred             HHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhc------------chhHHHHHHHHHHHHHHHH
Q 013318          360 LLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP------------YISLQAMLIVMVVGICVAL  426 (445)
Q Consensus       360 l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~------------~~~~~~~~~i~~~~~~~~~  426 (445)
                      +.|++.+...+...++++|.+|++ |+.+.+..+....+|..+++++..            ..++++.+.+.++..++..
T Consensus       129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  208 (479)
T PRK10077        129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL  208 (479)
T ss_pred             HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH
Confidence            899999999999999999999876 445788888777777776654431            1245666666555444444


Q ss_pred             HHH
Q 013318          427 VGI  429 (445)
Q Consensus       427 ~~~  429 (445)
                      +..
T Consensus       209 ~~~  211 (479)
T PRK10077        209 MLL  211 (479)
T ss_pred             HHH
Confidence            333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.45  E-value=3.5e-06  Score=95.85  Aligned_cols=114  Identities=19%  Similarity=0.021  Sum_probs=81.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  370 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  370 (445)
                      ..++..+++.+..++.+++.|+++||++||+.+..........+.........++     +..++++.++.|++.+...|
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~l~~~~~l~gi~~a~~~p  127 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNS-----VPLLFAALFLMGIHSALFGP  127 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHhhch
Confidence            4677778899999999999999999999887432211111111111111111122     35677888999999999999


Q ss_pred             hhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch
Q 013318          371 QLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       371 ~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~  409 (445)
                      ...+++.+++|+++ +.++|+.+...++|.++|+.+.+.+
T Consensus       128 ~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l  167 (1140)
T PRK06814        128 IKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLA  167 (1140)
T ss_pred             HHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998775 4589999999998888887777553

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.42  E-value=2.8e-06  Score=87.81  Aligned_cols=138  Identities=10%  Similarity=-0.020  Sum_probs=75.1

Q ss_pred             HhhhhHHHHHHHhCcchhhhhhhHHHHHHHH--Hhhh---cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccC
Q 013318           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVA--ANLF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (445)
Q Consensus        74 i~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~--~~~~---~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~  148 (445)
                      ++.+++++++||+|||+.++++..+.++...  ....   ++...+...-+...++....++....+.+|..        
T Consensus       350 ~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~--------  421 (502)
T TIGR00887       350 PGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF--------  421 (502)
T ss_pred             HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC--------
Confidence            4667889999999999999888765443322  2111   11111111111111111111223344556665        


Q ss_pred             CCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc
Q 013318          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  223 (445)
Q Consensus       149 ~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~  223 (445)
                        |++.|++..|+......++.++++.+...+......... .....+. ...|.+++++.+++.+..+++||++
T Consensus       422 --p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       422 --PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKG-YPTGIWM-GHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             --chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccc-ccccccc-hHHHHHHHHHHHHHHHHheEeccCC
Confidence              567899999999999999999998777665432110000 0000121 2345666666666655445666643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09848 glucuronide transporter; Provisional

Probab=98.42  E-value=2.4e-06  Score=86.90  Aligned_cols=153  Identities=12%  Similarity=-0.059  Sum_probs=96.1

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhhhccC-CCCchHHHHHH----HHHHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISLGIL----YTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~----~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      ..|++..+.+..++.+.++.......+...++ .+.........    .....+++++.+++.||+|+|+++.+|..+..
T Consensus       226 ~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~  305 (448)
T PRK09848        226 RNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGT  305 (448)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            34555555566666555554444444433322 23322211111    12234567788999999999999999987655


Q ss_pred             HHHHHh-hh--cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHH
Q 013318          101 LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (445)
Q Consensus       101 ~~~~~~-~~--~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~  177 (445)
                      +..... +.  ++++.+++.-++.|+|.+...+...+..++..+++...   ..++++|..+|++.....+|..+|+.+.
T Consensus       306 i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~---~g~r~~G~~~~~~~~~~klg~aig~~i~  382 (448)
T PRK09848        306 CGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL---TGVRIEGLTYSLFSFTRKCGQAIGGSIP  382 (448)
T ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh---hCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            543332 22  34555566678899999999988888888776532111   1123468999999999999999998877


Q ss_pred             HHhh
Q 013318          178 LAVL  181 (445)
Q Consensus       178 ~~l~  181 (445)
                      ..+.
T Consensus       383 g~~l  386 (448)
T PRK09848        383 AFIL  386 (448)
T ss_pred             HHHH
Confidence            6554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.42  E-value=1.1e-06  Score=89.68  Aligned_cols=139  Identities=9%  Similarity=-0.015  Sum_probs=97.0

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++..+.|.+.+.+.++.++++++.|++.||+|+|+. +..+.++..++.++.......  .   ...+++..++.|++.
T Consensus        72 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~~~~~--~---~~~l~~~r~~~G~~~  145 (465)
T TIGR00894        72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWS-IGIGMFLSSVISIVIPWAAGG--G---IALVVFCRVIQGLAQ  145 (465)
T ss_pred             CCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchh-hHHHHHHHHHHHHHHHHHHHc--C---chHHHHHHHHHHHhc
Confidence            3445568888999999999999999999999999874 455555544432211111111  1   235667788899999


Q ss_pred             hhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY-----ISLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~-----~~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      +...+....++++.+|++ ++.+.|+.+....+|..+++.+.+.     .++.+.+++.++..++..+..+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~  216 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF  216 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence            999999999999999865 4557888888888888777655533     2455567776665554444433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.39  E-value=4.1e-06  Score=81.52  Aligned_cols=142  Identities=13%  Similarity=0.078  Sum_probs=104.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhh
Q 013318          287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG  366 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  366 (445)
                      ++.+++|.+.+.+.++..++.++.|.++||...|+ ++..|+++.+++.+  +..+.++     ..++.++.++-|...+
T Consensus        61 lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~-fm~~gLilsai~ni--l~Gfs~s-----~~~~~~l~~lng~fQg  132 (448)
T COG2271          61 LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-FMAFGLILSAIVNI--LFGFSPS-----LFLFAVLWVLNGWFQG  132 (448)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce-eehHHHHHHHHHHH--HHhhhhH-----HHHHHHHHHHHHHHhc
Confidence            77779999999999999999999999999998887 55678877766543  3455432     2456667778899999


Q ss_pred             hhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          367 VLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG------PYISLQAMLIVMVVGICVALVGILFLTIQV  436 (445)
Q Consensus       367 ~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  436 (445)
                      ...|.....+++-+|++ |++..|+-|.-.++|.++.+.+.      ...+....|++-+++.++-.+..++..+..
T Consensus       133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            98999999999999865 56678887777777766544333      223566778777776665555555554433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.37  E-value=9.8e-06  Score=82.06  Aligned_cols=129  Identities=11%  Similarity=-0.020  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCc---cchhHHHHHHHHHhhhhhhhh
Q 013318          293 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGV---LGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       293 g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      +.+.....++..+|++++|+++||+|||+. +..+.++..++.+  ...+.++...   ..+..+++.-++.|++.+...
T Consensus        66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~  142 (432)
T PRK10406         66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKS-MLISVCMMCFGSL--VIACLPGYETIGTWAPALLLLARLFQGLSVGGEY  142 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHH--HHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            334444555666999999999999999984 4566655544432  2233333110   001235667788999999999


Q ss_pred             hhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhh----c--------chhHHHHHHHHHHHHHH
Q 013318          370 TQLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIG----P--------YISLQAMLIVMVVGICV  424 (445)
Q Consensus       370 ~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~----~--------~~~~~~~~~i~~~~~~~  424 (445)
                      +...++++|.+|++++. +.+..+.....|..++..+.    .        ..++++.|.+.++..++
T Consensus       143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence            99999999999876554 56776666666655554332    1        23455666655444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.36  E-value=2.4e-06  Score=90.41  Aligned_cols=119  Identities=15%  Similarity=0.080  Sum_probs=86.9

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccC---------------------
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV---------------------  344 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~---------------------  344 (445)
                      +++..+.|.+.+.+-++.+++.++.|++.||.+||+ ++..|.++.+++.++  ...++                     
T Consensus        64 ~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-~i~~g~ll~~lg~ll--~alphf~~~~y~~~~~~~~~~~~~~~  140 (633)
T TIGR00805        64 KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI-VIGIGCAIMGLGSFL--LSLPHFLSGRYSYSTTVSSTGNLSSA  140 (633)
T ss_pred             CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce-EEEecHHHHHHHHHH--HhChHHhcCCcccccccccccccccc
Confidence            344557899999999999999999999999999887 446666665554321  12221                     


Q ss_pred             -------C-----------------CC-ccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHH
Q 013318          345 -------T-----------------SG-VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCAS  398 (445)
Q Consensus       345 -------~-----------------~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g  398 (445)
                             +                 .. ...+..+++.-++.|+|.+...+...+++.|.+|++++ .+.|+++....+|
T Consensus       141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG  220 (633)
T TIGR00805       141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG  220 (633)
T ss_pred             ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence                   0                 00 00123456788899999999999999999999987755 4788988888888


Q ss_pred             HHHHHHhhc
Q 013318          399 IAVVFFIGP  407 (445)
Q Consensus       399 ~~ig~~i~~  407 (445)
                      .++|+.+.+
T Consensus       221 ~~lG~llgg  229 (633)
T TIGR00805       221 PAFGYLLGS  229 (633)
T ss_pred             hHHHHHHHH
Confidence            888876654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.35  E-value=0.0012  Score=67.02  Aligned_cols=281  Identities=12%  Similarity=0.060  Sum_probs=138.8

Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhHhhhhhhccC-CCCch--HH---HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhH
Q 013318           24 KNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGT--IS---LGILYTSFTCFSLVASLVVRVLGSKNALILGTT   97 (445)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~--~~---~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~   97 (445)
                      +.+.+.++.+++.++|+..+|...-.+-+++..+ .+-|.  +.   ...+..+..+..+..+++++|++|++.+-+-..
T Consensus         3 ~~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         3 VHELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            3466788889999999999998877776665332 22222  22   122222223336778999999999999887776


Q ss_pred             HHHHHHHHh---hhcchhh--------------------------------HHh-HHHHhhhhhHHhhhhhhhHHHHhhh
Q 013318           98 GYWLFVAAN---LFPSWYT--------------------------------MVP-ASLYLGFAASIIWVGEGTYLTAAAL  141 (445)
Q Consensus        98 ~~~~~~~~~---~~~~~~~--------------------------------li~-~r~l~Gig~g~~~~~~~~~i~~~~~  141 (445)
                      .+..+.+.+   .+|+-..                                +++ +.+..-+-.+   ...-++++|.. 
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS---~lFW~fandi~-  158 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLS---LLFWGFANQIT-  158 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHhcC-
Confidence            655444332   2222111                                110 1111111111   01123444554 


Q ss_pred             hhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchh---HHHHHHHHHHHHHHHHHh
Q 013318          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTL---LFIVFLGVITLGTILMCF  218 (445)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~---~~~i~~~l~~~~~~l~~~  218 (445)
                               .++|-.|.++++.++.++|..+|+.+...+.+....   .+.+...|...   ++.+..++..+...+...
T Consensus       159 ---------t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  226 (472)
T TIGR00769       159 ---------TIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRAS---LGPGVDGWHVSLKNLMVIVICSGLAIILLYWW  226 (472)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     466778999999999999999999776665422100   00011123211   122222222222222233


Q ss_pred             ccC-CcccCc--c-cccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccccccccccc----c
Q 013318          219 LRK-EEDKGE--K-ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV----S  290 (445)
Q Consensus       219 l~~-~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~----~  290 (445)
                      +.+ ..++++  + +..+++++++.+..+   ..+.++|+|..+.+..+.+..+.+.++....+-..+.+..-+.    .
T Consensus       227 l~~~~~~~~~~~~~~~~~~k~k~k~~~~e---s~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~  303 (472)
T TIGR00769       227 VNRNVLTDPRSYNPALKEKKVKPKMSTME---SLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSA  303 (472)
T ss_pred             HHhcccCCccccchhhccccCCCCCCHHH---HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            322 111111  0 000001111122233   3344678888777766666666655443221111111100011    1


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccch
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFI  323 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~  323 (445)
                      ..|.+....++...+..++.+++.+|+|-+...
T Consensus       304 f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a  336 (472)
T TIGR00769       304 FMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAA  336 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            244445556666667777779999999866433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.33  E-value=1.6e-05  Score=80.44  Aligned_cols=152  Identities=16%  Similarity=0.066  Sum_probs=102.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhh----ccCCCCchHHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTV----NTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i----~~~~~~g~~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~  103 (445)
                      |++..+.+..++...+........+..    ....+.......+......++.++.+++.||+|+|+++..+.++..+..
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~  304 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF  304 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence            455555555555555544333222222    1112222222334444556677889999999999999999998877655


Q ss_pred             HHh-hh--cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          104 AAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       104 ~~~-~~--~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      +.. +.  ++...+++.-++.|+|.+..++...+.++|..+.+....+   +++.|..+|.+.....++..+++.+...+
T Consensus       305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg---~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTG---RRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcC---CCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            543 33  4888888899999999999999999999999864422222   34568888888888888988888776655


Q ss_pred             hc
Q 013318          181 LK  182 (445)
Q Consensus       181 ~~  182 (445)
                      ..
T Consensus       382 l~  383 (428)
T PF13347_consen  382 LA  383 (428)
T ss_pred             HH
Confidence            43

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.32  E-value=2.8e-05  Score=77.47  Aligned_cols=125  Identities=14%  Similarity=-0.016  Sum_probs=79.5

Q ss_pred             hhhhhccCCCCchHHHHHHHH-----HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hh------hcchhhHHhH
Q 013318           50 LETTVNTEGNLGTISLGILYT-----SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL------FPSWYTMVPA  117 (445)
Q Consensus        50 ~~~~i~~~~~~g~~~~~~~~~-----~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~------~~~~~~li~~  117 (445)
                      ..+....|.+.+....+....     ...++.++.|++.||+|+|+.+.++..+..+.... ..      .++...+...
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            333333455666655555443     22345778999999999999998877544221111 11      1222333334


Q ss_pred             HHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcC
Q 013318          118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (445)
Q Consensus       118 r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~  183 (445)
                      -.+.+++.+...++..+.+.+..+         +++++|+.+++.++..++|..+|+.+++.+...
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~  366 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAG---------DGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR  366 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC---------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666665666555542         246889999999999999999999998877643

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.27  E-value=4.8e-05  Score=73.43  Aligned_cols=105  Identities=14%  Similarity=0.064  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhh
Q 013318           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (445)
Q Consensus        65 ~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~  143 (445)
                      .+.....++++.++.+++.||+|+||.+.++..+..+..... ..++...+ ..-++.|++.+..+|...+...+..   
T Consensus       184 ~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~---  259 (310)
T TIGR01272       184 TAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNAL---  259 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence            455666778899999999999999999888876555544333 23333222 2445789999999998776666654   


Q ss_pred             hhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhc
Q 013318          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (445)
Q Consensus       144 ~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~  182 (445)
                              +++.+++.++. ....+|..++|++.+.+..
T Consensus       260 --------~~~~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       260 --------GRHTSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             --------hhhhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence                    33456666765 4566788888876666654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PTZ00207 hypothetical protein; Provisional

Probab=98.27  E-value=2e-05  Score=81.98  Aligned_cols=138  Identities=11%  Similarity=0.048  Sum_probs=87.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCC--CCccchhHHHHHHHHHhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT--SGVLGTLYPLIMAALLGI  363 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~G~  363 (445)
                      +++.++++.+... +.....+.++.|++.||+|+|+ ++.++.++..++.++..+.....  .+   ...+++..++.|+
T Consensus        58 gls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~-vllig~ll~~iG~ll~ala~~~~i~~s---~~~l~l~r~l~G~  132 (591)
T PTZ00207         58 NLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRP-IFVLSMTVFCLGTLLFALTFQEVIEGS---VVRLSVYNGLMTL  132 (591)
T ss_pred             CcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHhcccccCc---HHHHHHHHHHHHH
Confidence            4444566665544 3333456667899999999987 55677777666544222221110  11   2456667778899


Q ss_pred             hhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHH-HHHhhcch--hHHHHHHHHHHHHHHHHHH
Q 013318          364 GDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAV-VFFIGPYI--SLQAMLIVMVVGICVALVG  428 (445)
Q Consensus       364 ~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~i-g~~i~~~~--~~~~~~~i~~~~~~~~~~~  428 (445)
                      +.+...+.....+.+.+|++|+.+.|+.+....+|+++ +.+....+  +....+++++++.++.++.
T Consensus       133 G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        133 GCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            98888777778888899988888899999999998864 33333332  3445555555544444333

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.23  E-value=1.8e-05  Score=79.16  Aligned_cols=139  Identities=16%  Similarity=0.099  Sum_probs=103.9

Q ss_pred             cccccch-hHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhh
Q 013318          285 PALGVSG-VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  363 (445)
Q Consensus       285 ~~~~~~~-~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  363 (445)
                      .+++.++ .|.+...+..+.++..++.|+++||+|.|+ ++..+.+...+..+  ++.+..+     ...+.++-+++|+
T Consensus        56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-vL~l~~l~Wsl~t~--L~~fa~S-----l~~L~i~R~llGv  127 (511)
T TIGR00806        56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-VLVLQALSFVCVWL--LLLLGTS-----VWHMQLMEVFYSV  127 (511)
T ss_pred             cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHH--HHHHHHH-----HHHHHHHHHHHHH
Confidence            4556667 899999999999999999999999999987 45566655554432  2334322     2457788999999


Q ss_pred             hhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhc------chhHHHHHHHHHHHHHHHHHHHHHH
Q 013318          364 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP------YISLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       364 ~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~------~~~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      +.+... ..+.++...+|++ ++.+.|+.+....+|.+++..+.+      +..+..-.++..+..++++++.+++
T Consensus       128 aEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       128 TMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            999988 8889999999876 455889999999999887765553      3345555677777777777766665

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.23  E-value=5.4e-05  Score=70.06  Aligned_cols=122  Identities=14%  Similarity=0.089  Sum_probs=76.6

Q ss_pred             hhhhhhccCCCCchHHHHHHHHHHHH---hhhhHHHHHHHhCcchhhhhhhHHHHH-HHHHh--h-----hcchhhHHhH
Q 013318           49 NLETTVNTEGNLGTISLGILYTSFTC---FSLVASLVVRVLGSKNALILGTTGYWL-FVAAN--L-----FPSWYTMVPA  117 (445)
Q Consensus        49 ~~~~~i~~~~~~g~~~~~~~~~~~ai---~~l~~g~l~dr~G~k~~l~~g~~~~~~-~~~~~--~-----~~~~~~li~~  117 (445)
                      ...|++.+..+.+..+...+-..--+   ..+++|.+.|++|++.++.+|.+...+ |....  .     .++.+.+...
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~  102 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLF  102 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHH
Confidence            45566655555555443333322212   347899999999999999999875443 32221  1     1456667666


Q ss_pred             HHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       118 r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                      .++.|.|.+...++......+++           |++||++.|+.-+.++++..+=..+...+.
T Consensus       103 ~~l~~~s~~~~~ta~lvt~~~NF-----------P~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  103 LFLGGNSSCWFNTASLVTCVRNF-----------PRSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHHcccHHHhhhHHHHHHHHhC-----------ccccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            67777776655555444334443           578999999999999888765554444443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.21  E-value=0.0011  Score=63.87  Aligned_cols=355  Identities=14%  Similarity=0.083  Sum_probs=155.0

Q ss_pred             cccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHHHHHHhh--hhHHHHHH-----HhCcchhhhhh
Q 013318           23 PKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFS--LVASLVVR-----VLGSKNALILG   95 (445)
Q Consensus        23 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ai~~--l~~g~l~d-----r~G~k~~l~~g   95 (445)
                      .+...+++..+....+.=-..+ +.+...|.+.+..+.++.+.+++-..+.-.+  +...+++|     |+||||..++=
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeee
Confidence            3445666666544333321111 1223556677778888887776655554333  35667777     99999987544


Q ss_pred             h-HHHHHHHHHh--h----------hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHH
Q 013318           96 T-TGYWLFVAAN--L----------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEF  162 (445)
Q Consensus        96 ~-~~~~~~~~~~--~----------~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~  162 (445)
                      + .+.+.+....  .          .|+-..+-..-++.-+.++....+.-...-..-          ++++.|-+..-.
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmL----------s~e~lgyaST~q  174 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTML----------SRENLGYASTCQ  174 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhc----------CHhhcCchhHHH
Confidence            3 2222222211  1          122222222334555555554444332222222          345666665555


Q ss_pred             HHHHHHhhhhhhHHHHHhhcCccccccc----c--CCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchh
Q 013318          163 WGMFASHQFVGNLITLAVLKDDKVCAAL----L--GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVN  236 (445)
Q Consensus       163 ~~~~~lg~~iG~li~~~l~~~~~~~~~~----~--~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~  236 (445)
                      ..+.+.|..+|+.+-..+.. ..-|+.-    +  .|...--.. ++.-+.+.+++..+..+.+++++++.+++.     
T Consensus       175 ~Vg~~~GyfL~~~ifLaL~s-~dF~N~y~rs~P~~~g~ItL~gy-~~fwg~~~~vat~Lv~~~kke~~~~~~~e~-----  247 (510)
T KOG3574|consen  175 SVGQTAGYFLGNVVFLALES-PDFCNTYLRSIPLDQGFITLAGY-LWFWGALFIVATTLVALLKKENDESVDEEL-----  247 (510)
T ss_pred             HHHHhhhHHhhcceeeEecC-hhhhhHHHhcCcCccceEEhhHH-HHHHHHHHHHHHHHHHHhcCCCchhhhhhh-----
Confidence            55555555555543322221 1122220    0  010000011 111233344444444444443322221111     


Q ss_pred             hhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH--hhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccc
Q 013318          237 FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW--AEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT  314 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~--~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~  314 (445)
                       ..+..+..+-..+.+|-|.+..+.......-  .+|.-  +..+..+.+.|+..++.+++....--.+++.....|+.+
T Consensus       248 -~~~i~~~yk~l~~vLklk~v~~la~i~lt~K--~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~t  324 (510)
T KOG3574|consen  248 -ELGIHESYKLLRDVLKLKSVRWLAGILLTGK--LGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWT  324 (510)
T ss_pred             -hcCHHHHHHHHHHHHcCccHHHHHHHHHHHH--HHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeec
Confidence             1122333444556666777655543222211  12321  122222345566555655544444444555555556554


Q ss_pred             cC------CCCccchHhHHHHHHHHHHHHHHhhccC-CCCc-cchhH-HHHHHHHHhhhhhhhhhhhhHHHHhhccCCch
Q 013318          315 TG------LPSITFIVSGGAIAQVVVFLWILINYSV-TSGV-LGTLY-PLIMAALLGIGDGVLNTQLSALLGILFKHDTE  385 (445)
Q Consensus       315 d~------~g~~~~~i~~g~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~  385 (445)
                      .+      +-|+.+ ..++.......+++..-.+.+ +..+ ..+.+ .+....+.+...-.......+..+++.|+..+
T Consensus       325 a~~~pl~~~lka~~-~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~ig  403 (510)
T KOG3574|consen  325 AGPRPLNVFLKAVP-YRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIG  403 (510)
T ss_pred             CCCCcchHHHHhhh-HHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccC
Confidence            32      111111 112211111122211112222 1111 01122 22234455554444445566777888776655


Q ss_pred             -hhHHHHHHHHHHHH
Q 013318          386 -GAFAQLKVWQCASI  399 (445)
Q Consensus       386 -~a~~~~~~~~~~g~  399 (445)
                       +.+.+.|...++|.
T Consensus       404 gTymTlLNTLsnLGg  418 (510)
T KOG3574|consen  404 GTYMTLLNTLSNLGG  418 (510)
T ss_pred             ccHHHHHHHHHHhcC
Confidence             46788888888873

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.21  E-value=3.3e-05  Score=75.27  Aligned_cols=168  Identities=16%  Similarity=0.129  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHH-HHHH
Q 013318          260 IIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVV-VFLW  337 (445)
Q Consensus       260 l~~~~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~-~~~~  337 (445)
                      +....+..+++.-...+.....+. +-+++.++.+++.+...+...+.+++.|.+.||+|.|+.. ..+.++.++ ++. 
T Consensus        18 ~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~-~~s~~l~~IP~~~-   95 (417)
T COG2223          18 LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT-ILSMLLLLIPCLG-   95 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH-HHHHHHHHHHHHH-
Confidence            333444555554333333333332 2344455899999999999999999999999999988744 455444333 332 


Q ss_pred             HHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----hh--
Q 013318          338 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----IS--  410 (445)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----~~--  410 (445)
                        ..+..+...  +..++++..+.|++.+.. ..-.+.++..||++ ++.|.|++- ..++|.++.-++.|.    ..  
T Consensus        96 --~~~a~~~~~--~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~  169 (417)
T COG2223          96 --LAFAVTYPS--TWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFL  169 (417)
T ss_pred             --HHHHccCCc--hHHHHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhH
Confidence              122222111  235677888888876554 44556788899987 556888887 667777665555543    33  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          411 -LQAMLIVMVVGICVALVGILFLTIQ  435 (445)
Q Consensus       411 -~~~~~~i~~~~~~~~~~~~~~~~~~  435 (445)
                       .+....+..+.+++..+.+.+..+.
T Consensus       170 ~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         170 AWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             4445566666666666666555433

>PRK15075 citrate-proton symporter; Provisional

Probab=98.21  E-value=6.1e-05  Score=76.27  Aligned_cols=127  Identities=15%  Similarity=0.016  Sum_probs=73.1

Q ss_pred             hhHhhhhhhccC-CCCchHHHHHH----HHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHH--HH-h--hhcchhhHH
Q 013318           46 AAQNLETTVNTE-GNLGTISLGIL----YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV--AA-N--LFPSWYTMV  115 (445)
Q Consensus        46 ~~~~~~~~i~~~-~~~g~~~~~~~----~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~--~~-~--~~~~~~~li  115 (445)
                      ......|.+.++ .+.+....+..    .....++.++.|++.||+|||++++.+..+..+..  .. .  ..+++..+.
T Consensus       256 ~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (434)
T PRK15075        256 LITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML  335 (434)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            333445554332 45554332222    22345677889999999999999887654332211  11 1  123333333


Q ss_pred             hHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHH-HhhhhhhHHHHHhhc
Q 013318          116 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA-SHQFVGNLITLAVLK  182 (445)
Q Consensus       116 ~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~-lg~~iG~li~~~l~~  182 (445)
                      ....+.|++.+...+....++.|..          |+++||...|+.+.... ++..++|.+...+..
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~e~~----------p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        336 AVELWLSFLYGSYNGAMVVALTEVM----------PAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHC----------CCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3345566666666665566777776          56789999998654333 345667777665543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.13  E-value=4e-05  Score=79.42  Aligned_cols=138  Identities=17%  Similarity=0.123  Sum_probs=86.1

Q ss_pred             cccccc-hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhh
Q 013318          285 PALGVS-GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  363 (445)
Q Consensus       285 ~~~~~~-~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  363 (445)
                      .++|.+ ...++.....++..++.++.|+++|.+|||. +++.+.++..++.+.  ..-.++     .........+.|+
T Consensus        72 ~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-~~i~g~~l~vvG~Iv--~atA~~-----~~~~iag~~l~Gv  143 (599)
T PF06609_consen   72 ADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-FFIIGSLLGVVGSIV--CATAQN-----MNTFIAGMVLYGV  143 (599)
T ss_pred             HhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-HHHHHHHHHHhHHHH--hhcCCc-----HHHHHHHHHHHHH
Confidence            345543 4556667788899999999999999999997 556777777666542  232322     2346667888899


Q ss_pred             hhhhhhhhhhHHHHhhccCCchh-hHHHHHHHHHH----HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013318          364 GDGVLNTQLSALLGILFKHDTEG-AFAQLKVWQCA----SIAVVFFIGPYISLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       364 ~~~~~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~----g~~ig~~i~~~~~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                      |.+... .....++|+.|.+.|. ..++.......    |..++..+...-+++|.+++......++++..++
T Consensus       144 gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  144 GAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             hhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence            865554 4566789999876553 23322221111    2223333333447888888877766666554433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.12  E-value=3.5e-05  Score=73.67  Aligned_cols=119  Identities=18%  Similarity=0.206  Sum_probs=85.3

Q ss_pred             HhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHhh---hcchh--hHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccC
Q 013318           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAANL---FPSWY--TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (445)
Q Consensus        74 i~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~~---~~~~~--~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~  148 (445)
                      -|.++.++++||+|||++|.++.++++++.+...   .+|..  .+.++|++.-.+    +.+.+.|-.|+.        
T Consensus       396 PGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~----fqvaYvYtPEVy--------  463 (528)
T KOG0253|consen  396 PGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGA----FQVAYVYTPEVY--------  463 (528)
T ss_pred             CchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhch----heEEEEecCccc--------
Confidence            4778999999999999999999999888877532   34443  334567665433    345577778887        


Q ss_pred             CCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       149 ~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                        |.+-|+...|.-.+..-+|+++.|+++.-..  .+            ......+++++++++.+..+++|
T Consensus       464 --PTavRatgvGtcSsmaRIggI~~p~iA~~~e--~s------------~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  464 --PTAVRATGVGTCSSMARIGGIFSPVIAMRAE--LS------------TSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             --chhhhhcchhhhhhHHhhhhhhhhHHHHHhc--cc------------eeehHHHHHHHHHHHHHHheeee
Confidence              4678999999988888888888888883222  11            12234567888888877777887

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.12  E-value=2.2e-05  Score=78.17  Aligned_cols=142  Identities=23%  Similarity=0.293  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCC-CCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~-g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      +..-.+..++...-+..+++||++||+ |+|++ +..|.++.+++.+.  +..++...   +..+++..++.++|.|...
T Consensus        62 ~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t-I~lGail~~iGh~~--L~~~~~~~---~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          62 HATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT-IVLGAILMAIGHLV--LAISSVSG---PGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHH--Hhcccccc---ccHHHHHHHHHHhcccccc
Confidence            333344556555567778899999996 77775 46788887777642  34442111   3567788888889999999


Q ss_pred             hhhhHHHHhhccCC--ch-hhHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013318          370 TQLSALLGILFKHD--TE-GAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVGICVALVGILFLTIQVEK  438 (445)
Q Consensus       370 ~~~~~~l~~~~~~~--~~-~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  438 (445)
                      +-..+++++++|++  |+ +.++++....++|+.+++.+.++.    ++++.|.+.++...++.+.+...+++...
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence            99999999999754  33 368877777778887777776654    67888888888888998888776665543

>PRK09669 putative symporter YagG; Provisional

Probab=98.10  E-value=7.9e-05  Score=75.73  Aligned_cols=107  Identities=7%  Similarity=0.007  Sum_probs=75.3

Q ss_pred             HHhhhhHHHHHHHhCcchhhhhhhHHHHHHHH-Hhh--hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (445)
Q Consensus        73 ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~-~~~--~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~  149 (445)
                      .++.++.+++.||+|+|+.+.++..+..+... ...  .++...+++..++.|+|.+...+...+.++|..+.....   
T Consensus       278 ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~---  354 (444)
T PRK09669        278 LFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKR---  354 (444)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---
Confidence            35667889999999999999888765543222 222  245666677788999999999999888998887521100   


Q ss_pred             CccchhhhhhhHHHHHHHHhhhhhhHHHHHhhc
Q 013318          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (445)
Q Consensus       150 ~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~  182 (445)
                      .-+++.|..+|.+..+..+|..+|+.+++.+..
T Consensus       355 ~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        355 SGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             cCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            012234567788877888999999988766554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.00028  Score=70.73  Aligned_cols=153  Identities=14%  Similarity=0.010  Sum_probs=98.7

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHH-----HHHHHHH-HHHhhhhHHHHHHHhCcchhhhhhhHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS-----LGILYTS-FTCFSLVASLVVRVLGSKNALILGTTGY   99 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~-----~~~~~~~-~ai~~l~~g~l~dr~G~k~~l~~g~~~~   99 (445)
                      ..|++..+.+.+++.+.+++....+..... +..+|...     ....+.+ ..++.++.+++.+|+|+|+++.++.+++
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~-~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~  312 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYV-TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLL  312 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeE-EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHH
Confidence            445566666677777777665444433322 22333211     2222222 3344788999999999999999999888


Q ss_pred             HHHHHHh-hh--cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHH
Q 013318          100 WLFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (445)
Q Consensus       100 ~~~~~~~-~~--~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li  176 (445)
                      .+..+.. +.  ++...+++..++.++|.+..++-.-+.++|..+..-...+   .++-|...|....+..+|..+|+.+
T Consensus       313 ~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG---~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         313 AVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTG---VRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhC---CCchhhHHHHHHHHHHHHHHHHHHH
Confidence            7766654 33  4677778888999999999888888888887643211111   2334566677666678888888866


Q ss_pred             HHHhhc
Q 013318          177 TLAVLK  182 (445)
Q Consensus       177 ~~~l~~  182 (445)
                      .++.+.
T Consensus       390 ~g~~L~  395 (467)
T COG2211         390 PGWILG  395 (467)
T ss_pred             HHHHHH
Confidence            554443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.98  E-value=0.00012  Score=75.05  Aligned_cols=112  Identities=15%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccC----CCCccchHhHHHHHHHHHHHHHHhhccCCCC-ccchhHHHHHHHH
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTG----LPSITFIVSGGAIAQVVVFLWILINYSVTSG-VLGTLYPLIMAAL  360 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~----~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l  360 (445)
                      +++...+|.++.+.-+..++..++.|+++||    +|||++.++.+.+...+++.+  +..+|+.+ .......++...+
T Consensus        38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l--lf~~p~~~~~~~~~~~~~~~~l  115 (473)
T PRK10429         38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL--LFSAHLFEGTAQYVFVCVTYIL  115 (473)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH--HHcCCCCCccHHHHHHHHHHHH
Confidence            5666788999999999999999999999994    599888888887776665432  22333211 1001234455667


Q ss_pred             HhhhhhhhhhhhhHHHHhhccCC-chh-hHHHHHHHHHHHH
Q 013318          361 LGIGDGVLNTQLSALLGILFKHD-TEG-AFAQLKVWQCASI  399 (445)
Q Consensus       361 ~G~~~~~~~~~~~~~l~~~~~~~-~~~-a~~~~~~~~~~g~  399 (445)
                      ++++....+....++.+++.+|+ +++ ..+.-+.+.++|.
T Consensus       116 ~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~  156 (473)
T PRK10429        116 WGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAG  156 (473)
T ss_pred             HHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            78888888888889999998544 333 4555455555553

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.97  E-value=2.4e-05  Score=78.23  Aligned_cols=121  Identities=18%  Similarity=0.264  Sum_probs=91.1

Q ss_pred             HhhhhHHHHHHHhCcchhhhhhhHHHHH-HHHHhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCcc
Q 013318           74 CFSLVASLVVRVLGSKNALILGTTGYWL-FVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG  152 (445)
Q Consensus        74 i~~l~~g~l~dr~G~k~~l~~g~~~~~~-~~~~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~  152 (445)
                      ..-++++++++|+|+-+++.+|+++... ++.....+|++..++.-+++|+..+.+|.+..+|++..+          ||
T Consensus       421 ~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va----------Pp  490 (618)
T KOG3762|consen  421 LFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA----------PP  490 (618)
T ss_pred             HHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC----------CC
Confidence            3445788999999999999999988766 444456789999999999999999999999999999998          56


Q ss_pred             chhhhhhhHHHHHH-HHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 013318          153 TVIGSFNGEFWGMF-ASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM  216 (445)
Q Consensus       153 ~~rg~~~g~~~~~~-~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~  216 (445)
                      +-|..+-|+....+ ++|--+|.+|++.+.....           - +..|.++++.+++..++.
T Consensus       491 ~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-----------~-~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  491 GLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-----------A-RTTFRIFGIACLVTLALF  543 (618)
T ss_pred             cchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-----------h-HHHHHHHHHHHHHHHHHH
Confidence            77778778776554 6777778888776654432           2 344556665555444433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.95  E-value=3e-05  Score=74.42  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHH-HHHHHhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI-MAALLGIGDGVLN  369 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~~~~~  369 (445)
                      ..|++-+.+++.+.+.++.+|.++||.|||. ++..|++..++..+    .|.-+..    ...++ .-++.|+..+-. 
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp-vll~c~~~va~s~l----l~~~S~~----F~afv~aR~l~Gi~kgnl-  138 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKP-VLLACLIGVALSYL----LWALSRN----FAAFVLARFLGGIFKGNL-  138 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCchH-HHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHhhhhccCch-
Confidence            5788899999999999999999999999885 66677666555432    2322221    12333 366777765544 


Q ss_pred             hhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcchhH
Q 013318          370 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYISL  411 (445)
Q Consensus       370 ~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~~~  411 (445)
                      ..+.++++|+++++ ++.+++..+.-.++|..+|+.+++++..
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            57789999999765 4457887777777888888777766544

>PRK11462 putative transporter; Provisional

Probab=97.93  E-value=0.00027  Score=72.16  Aligned_cols=115  Identities=23%  Similarity=0.165  Sum_probs=80.0

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccC----CCCccchHhHHHHHHHHHHHHHHhhccCCCCccc-hhHHHHHHHH
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTG----LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG-TLYPLIMAAL  360 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~----~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  360 (445)
                      +++...+|.++.+.-+..++..++.|+++||    +|||++.++.|.+..++++.+  +.+.|+.+..+ ....++.+.+
T Consensus        41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l--lf~~p~~s~~~~~~y~~~~~~~  118 (460)
T PRK11462         41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL--AYSTPDLSMNGKMIYAAITYTL  118 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH--HHhCCCCCcchHHHHHHHHHHH
Confidence            5666678999999999999999999999997    588888888887766665432  22333211100 1234556777


Q ss_pred             HhhhhhhhhhhhhHHHHhhccCCch--hhHHHHHHHHHHHHHHH
Q 013318          361 LGIGDGVLNTQLSALLGILFKHDTE--GAFAQLKVWQCASIAVV  402 (445)
Q Consensus       361 ~G~~~~~~~~~~~~~l~~~~~~~~~--~a~~~~~~~~~~g~~ig  402 (445)
                      +.++..+.+....++.+++.+|.++  +..+....+..+|..++
T Consensus       119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~  162 (460)
T PRK11462        119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLS  162 (460)
T ss_pred             HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888999999976533  35666666666665444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.92  E-value=9.7e-05  Score=76.59  Aligned_cols=130  Identities=13%  Similarity=0.135  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  370 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  370 (445)
                      +.+.+.+...+++.+++++.|+++|++|||+.+ ..+.+...++.+  ....+++     ...+.+.-++.|+|.+....
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l-~~~~~~~~iG~i--i~~~a~~-----~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL-LLAVVLFLIGAI--IIALAPS-----WYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHH--HHHHhhh-----HHHHHHHHHHhccchhhhhh
Confidence            347888999999999999999999999999854 566666655543  2334433     35788899999999999998


Q ss_pred             hhhHHHHhhccCCchhh-HHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHH
Q 013318          371 QLSALLGILFKHDTEGA-FAQLKVWQCASIAVVFFIGPYI-----SLQAMLIVMVVGICVALVG  428 (445)
Q Consensus       371 ~~~~~l~~~~~~~~~~a-~~~~~~~~~~g~~ig~~i~~~~-----~~~~~~~i~~~~~~~~~~~  428 (445)
                      ..+.+++|+.|++.|.. .+.++.....|..+++.++...     ++...+.+..+.+++-.+.
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence            99999999999875554 5677777778888887666433     3444444444444444443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.87  E-value=0.00017  Score=72.51  Aligned_cols=143  Identities=21%  Similarity=0.135  Sum_probs=93.9

Q ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhccccCCCC-ccchHhHHHHHHHHHHH-HHHhhccCCCCccchhHHHHHHHHHh
Q 013318          285 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPS-ITFIVSGGAIAQVVVFL-WILINYSVTSGVLGTLYPLIMAALLG  362 (445)
Q Consensus       285 ~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~-~~~~i~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G  362 (445)
                      .+-+.+-.|.+.+...++.+++++.+|+.+.|.++ |+++ +.|.++++++-+ +..+.+.++..   ..+++++-++.|
T Consensus        66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl-i~s~ii~~~g~llY~~l~~~~~~~---~y~mL~~R~l~G  141 (488)
T KOG2325|consen   66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL-IVSFLIAIIGNLLYLALAYVPNGV---KYLMLVARILTG  141 (488)
T ss_pred             CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH-HHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHcC
Confidence            33344567899999999999999999999999875 5555 466665555432 21233444422   256888999999


Q ss_pred             hhhhhhhhhhhHHHHhhc-cCCchhhHHHHHHHHHHHHHHHHHhhcc-----------------hhHHHHHHHHHHHHHH
Q 013318          363 IGDGVLNTQLSALLGILF-KHDTEGAFAQLKVWQCASIAVVFFIGPY-----------------ISLQAMLIVMVVGICV  424 (445)
Q Consensus       363 ~~~~~~~~~~~~~l~~~~-~~~~~~a~~~~~~~~~~g~~ig~~i~~~-----------------~~~~~~~~i~~~~~~~  424 (445)
                      +|.+.. ..+-+++++.. ++||.+|++.....+.+|..+|+.+++.                 .-+...-++.+.++++
T Consensus       142 vg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~  220 (488)
T KOG2325|consen  142 VGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWII  220 (488)
T ss_pred             cCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHH
Confidence            986655 45667777753 5667778777666666666665544321                 1245566777777777


Q ss_pred             HHHHHHHH
Q 013318          425 ALVGILFL  432 (445)
Q Consensus       425 ~~~~~~~~  432 (445)
                      .++...+.
T Consensus       221 ~~v~i~~~  228 (488)
T KOG2325|consen  221 YIVIILFF  228 (488)
T ss_pred             HHHHHHhh
Confidence            77666554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.86  E-value=0.00016  Score=75.03  Aligned_cols=131  Identities=13%  Similarity=0.044  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  370 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  370 (445)
                      ...+..+++-++.++|++++|.++||+|||. +++.+.++..++-+  ...+.++     +...++.-++-|++.+....
T Consensus       119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~-~~~~~~~~~~i~~~--~~a~a~~-----~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKP-VLLVSLLLFIIFGI--LTAFAPN-----YWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhhheehHhhcccHH-HHHHHHHHHHHHHH--HHHHhCc-----HHHHHHHHHHHHhhccchhH
Confidence            4556678899999999999999999999987 45677666655432  3345544     35678889999999999999


Q ss_pred             hhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHH
Q 013318          371 QLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIGPYI--SLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       371 ~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~~~~--~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      ..+.+.+|+++++.|. +..+ ......+..++.....++  ++.+..++......+.++.++
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~  252 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWF  252 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999776554 4444 333333333333222222  455555555555554444433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.84  E-value=0.041  Score=56.26  Aligned_cols=281  Identities=15%  Similarity=0.101  Sum_probs=137.6

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhccC-CCCchHHHHHHHH---HHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISLGILYT---SFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~---~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      .+++.++.+++.++|+...|...-.+-+.+-.+ .+-..+..--.+.   ...+..+...++.+|++++++.-+....+.
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~  100 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFL  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            577888899999999888887666655544322 2222222211222   222344568899999999998877766655


Q ss_pred             HHHHHh---hhcchhh-----------HHhHHHHhhh-hhHHhhhhh------------------hhHHHHhhhhhhhcc
Q 013318          101 LFVAAN---LFPSWYT-----------MVPASLYLGF-AASIIWVGE------------------GTYLTAAALSHASNH  147 (445)
Q Consensus       101 ~~~~~~---~~~~~~~-----------li~~r~l~Gi-g~g~~~~~~------------------~~~i~~~~~~~~~~~  147 (445)
                      .+.+.+   .+|+-..           ....+.+.|. ..--.|+..                  -.+.++..       
T Consensus       101 ~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~it-------  173 (491)
T PF03219_consen  101 GFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEIT-------  173 (491)
T ss_pred             HHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence            443322   2332000           0000111110 000011111                  12233333       


Q ss_pred             CCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH---HhccC---
Q 013318          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM---CFLRK---  221 (445)
Q Consensus       148 ~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~---~~l~~---  221 (445)
                         ..+|-.|.++++..+.++|.++++.+...+..+...  ..+.+...|...+...+.++.+.+.++.   ..+.+   
T Consensus       174 ---t~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl  248 (491)
T PF03219_consen  174 ---TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRK--SLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVL  248 (491)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence               466788999999999999999888776666541100  0001223454333333333333333322   22321   


Q ss_pred             --CcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH----hhhcccccccccc-cchhHH
Q 013318          222 --EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW----AEFTKEIVTPALG-VSGVGG  294 (445)
Q Consensus       222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~----~~~~~~~~~~~~~-~~~~g~  294 (445)
                        |+..+ ++..+++++++.+.++.   ..-++|+|....+..+....|++....-    ...-..+.++ -. .+..|-
T Consensus       249 ~~~~~~~-~~~~~kk~k~k~s~~es---~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~-~~ysafmG~  323 (491)
T PF03219_consen  249 TDPRFYP-SAKKKKKKKPKMSLKES---FKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDP-NDYSAFMGK  323 (491)
T ss_pred             Cccccch-hhhcccccCCCccHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-hHHHHHHHH
Confidence              11100 01011111112233332   2335677777777666666666554331    1111111111 11 123455


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCccc
Q 013318          295 AMAVYGAFDAICSLAAGRLTTGLPSITF  322 (445)
Q Consensus       295 ~~~~~~i~~~~g~~~~G~l~d~~g~~~~  322 (445)
                      .....|+...+..++.+++.+|+|.+..
T Consensus       324 ~~~~tGivtii~~~l~~~iir~~GW~~~  351 (491)
T PF03219_consen  324 FSSWTGIVTIIMMFLSSNIIRRFGWRTA  351 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            5566677777777788899999986653

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.83  E-value=0.00026  Score=68.79  Aligned_cols=116  Identities=17%  Similarity=0.099  Sum_probs=87.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++..+.+++...+-.+..+.++..|++.||+|.|+. +..|+.+++++..   +.|+... ...+...+...++.|.|.
T Consensus        44 ~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-i~lgL~l~avg~~---lF~pAa~-~~~y~~FL~~lFila~Gi  118 (422)
T COG0738          44 DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-IVLGLLLYAVGAA---LFWPAAS-SKSYGFFLVALFILASGI  118 (422)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-HHHHHHHHHHHHH---HHhhhhh-hhhHHHHHHHHHHHHhhh
Confidence            3555678888888889999999999999999999875 4688888887643   2343211 111456677788899999


Q ss_pred             hhhhhhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhh
Q 013318          366 GVLNTQLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~  406 (445)
                      +..++..+++++.+.|++.++ -....+.+..+|+.+++.+.
T Consensus       119 ~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g  160 (422)
T COG0738         119 GLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG  160 (422)
T ss_pred             HHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            999999999999999876443 35677777778877776554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.0001  Score=74.86  Aligned_cols=141  Identities=11%  Similarity=0.116  Sum_probs=101.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhh
Q 013318          288 GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV  367 (445)
Q Consensus       288 ~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  367 (445)
                      +.++.++++..+..|.+++.+..|++.||+|.|+.+ ..+.++.+++-++...  ..+.+   ...++++-++.|++.+.
T Consensus        71 s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~-~~~~~~sa~~t~l~P~--aa~~~---~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   71 SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF-FISGLISALLTLLTPL--AASIG---FYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH-HHHHHHHHHHHHHHHH--HHHhc---chhhHHHHHHhHHHHhH
Confidence            445788999999999999999999999999999844 4554444433222222  11111   13567889999999999


Q ss_pred             hhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          368 LNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGP-----YISLQAMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       368 ~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                      ..|.+..++++-.|.+++ ...++...+..+|..++.-+++     ..+....+|+.+++.++-.+.++....
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999986544 4567766666777766544443     356788999999988888877766544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.78  E-value=0.055  Score=54.42  Aligned_cols=127  Identities=13%  Similarity=0.004  Sum_probs=72.1

Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH-hhccCCCC--ccchhHHH
Q 013318          279 TKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INYSVTSG--VLGTLYPL  355 (445)
Q Consensus       279 ~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~  355 (445)
                      ..+...++++...+|..-....+..+.|.+...++.+|+|..+.- ..+.....+++.+.. ..|.+..+  ......++
T Consensus       282 t~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G-~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~  360 (432)
T PF06963_consen  282 TAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG-LWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLL  360 (432)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHH
Confidence            334455678878889888888899999999999999999965532 344454444432221 12333321  11011222


Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhh
Q 013318          356 IMAALLGIGDGVLNTQLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       356 ~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~  406 (445)
                      ...++-=+|--.+.-...-++.|..|++++. ..|+-+..|++-..+.+...
T Consensus       361 ~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  361 GGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222223334455777878876554 56777777776665555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.76  E-value=0.0005  Score=63.72  Aligned_cols=124  Identities=15%  Similarity=0.048  Sum_probs=79.6

Q ss_pred             hhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHH
Q 013318          276 AEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYP  354 (445)
Q Consensus       276 ~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (445)
                      +.|.+.+.+ .+++.++...+.....++..+ +++.|.+.|+.|.+. ++.+|.+...+++.+..+...........+.+
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~-~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWV-VLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence            455555533 355666777777777777766 488899999999875 55788888777764332222221110112334


Q ss_pred             HHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHH
Q 013318          355 LIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAV  401 (445)
Q Consensus       355 ~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~i  401 (445)
                      .+..++-|.+.+..++.......+.||++|+.+.|+...+..+++++
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai  146 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAI  146 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHH
Confidence            44445555665555665555555789999999999888888888765

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.00033  Score=72.02  Aligned_cols=144  Identities=13%  Similarity=0.071  Sum_probs=102.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCch----HHHHHHHHHHHHhhhhHHHHHHHhCcc--hhhhhhhHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSK--NALILGTTGYWL  101 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~----~~~~~~~~~~ai~~l~~g~l~dr~G~k--~~l~~g~~~~~~  101 (445)
                      +.++.+.++..+...+|.......|...++.+...    ...+++-....++.+..|++.|+...|  ....++.+..++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            45566777777777777766655555444433333    335555566677888999999998843  344444444444


Q ss_pred             HHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          102 FVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       102 ~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      ..... +.+++..++...++.|+..|....-...++.+..          ..++-..++|+...+..++..+||+++..+
T Consensus       378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~----------g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~  447 (509)
T KOG2504|consen  378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV----------GLEKLSNAYGLLLLFQGIGALVGPPIAGLL  447 (509)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence            44332 5788889999999999999988877766777775          467888999999999999999999988754


Q ss_pred             h
Q 013318          181 L  181 (445)
Q Consensus       181 ~  181 (445)
                      .
T Consensus       448 ~  448 (509)
T KOG2504|consen  448 Y  448 (509)
T ss_pred             e
Confidence            3

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.70  E-value=0.00034  Score=68.96  Aligned_cols=113  Identities=18%  Similarity=0.035  Sum_probs=71.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhh
Q 013318          290 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       290 ~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      ...+.+.+.-.++.++|++++|++.||+|||+ +.-..+++..++-+.+-+....++..--...+...-+++|+|.+.=.
T Consensus        84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~-vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY  162 (538)
T KOG0252|consen   84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKK-VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY  162 (538)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence            35678888899999999999999999999987 33334444333322111222222110001335567788999999988


Q ss_pred             hhhhHHHHhhccCCchhh-----HHHHHHHHHHHHHHHH
Q 013318          370 TQLSALLGILFKHDTEGA-----FAQLKVWQCASIAVVF  403 (445)
Q Consensus       370 ~~~~~~l~~~~~~~~~~a-----~~~~~~~~~~g~~ig~  403 (445)
                      |..-++.+|...++++++     +++..+....|..++.
T Consensus       163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~  201 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVAL  201 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHH
Confidence            988889999887665543     3444444444444443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.63  E-value=0.00069  Score=68.11  Aligned_cols=186  Identities=13%  Similarity=0.107  Sum_probs=119.1

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccccccccc--hhHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 013318          244 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSIT  321 (445)
Q Consensus       244 ~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~--~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~  321 (445)
                      .++...+++.+++..+.++..+..|...++..+.+  +++.++++..  -.|.+.+..-.+.++.-++.+|+.+|+|+-+
T Consensus       360 v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFL--fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~  437 (618)
T KOG3762|consen  360 VLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFL--FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN  437 (618)
T ss_pred             HHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHH--HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc
Confidence            34455577888877665554455555444332211  1222223321  2344445566667777778899999999876


Q ss_pred             chHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHH-----HHHHH
Q 013318          322 FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQ-----LKVWQ  395 (445)
Q Consensus       322 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~-----~~~~~  395 (445)
                       ++..|+.+...=++  ++++..++     +..+-+=++-|+..+..+..+-+++++..|++.+ ++-++     +.+..
T Consensus       438 -v~~lgLa~~~~Rf~--~~S~L~n~-----W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~  509 (618)
T KOG3762|consen  438 -VMYLGLACNVGRFL--YYSYLQNP-----WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGK  509 (618)
T ss_pred             -eeeehhhHHHHHHH--HHHHhcCc-----hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCc
Confidence             44677666665543  34555443     4555666778888888888888999999998744 44443     33344


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013318          396 CASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKA  439 (445)
Q Consensus       396 ~~g~~ig~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  439 (445)
                      ++|+.||-.+..+++....+.++++.|++.++.+..+.+..+|+
T Consensus       510 g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l~~~  553 (618)
T KOG3762|consen  510 GLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLLKRR  553 (618)
T ss_pred             chhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            67778877777777878888887887777777777776666554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.00061  Score=68.95  Aligned_cols=108  Identities=15%  Similarity=0.159  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhh
Q 013318          294 GAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLS  373 (445)
Q Consensus       294 ~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  373 (445)
                      .+.+.+.++.++|+++.|.+.||+|||..++ ...++..++-+........+.    +-++.+.-++.|+..+......+
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~-~~~~l~~~~~~~~~~s~~~~~----~e~li~GR~i~Gl~~gl~~~~~p  138 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALL-LSNLLAVLAALLMGLSKSAPS----FEMLILGRLIVGLACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhHHHHHHHH
Confidence            4456888999999999999999999997543 443333322111122222111    23566788899999999888999


Q ss_pred             HHHHhhccCCchhhHH-HHHHHHHHHHHHHHHhh
Q 013318          374 ALLGILFKHDTEGAFA-QLKVWQCASIAVVFFIG  406 (445)
Q Consensus       374 ~~l~~~~~~~~~~a~~-~~~~~~~~g~~ig~~i~  406 (445)
                      -++.|..|++.|+..| +.+....+|..++..++
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999776555 56666667777775444

>TIGR00788 fbt folate/biopterin transporter

Probab=97.60  E-value=0.00082  Score=68.80  Aligned_cols=117  Identities=10%  Similarity=-0.042  Sum_probs=85.5

Q ss_pred             CCCchHHHHHHHHHH----HHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh--h---------hcchhhHHhHHHHhh
Q 013318           58 GNLGTISLGILYTSF----TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--L---------FPSWYTMVPASLYLG  122 (445)
Q Consensus        58 ~~~g~~~~~~~~~~~----ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~--~---------~~~~~~li~~r~l~G  122 (445)
                      .+.+....+..+...    .++....+++.+|++.|+++.++.++..+.....  .         .++...++...++.+
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~  362 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE  362 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence            344444444444433    3455667788889999999999988766544221  1         133334555678999


Q ss_pred             hhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCc
Q 013318          123 FAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (445)
Q Consensus       123 ig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~  184 (445)
                      ++.+..+.....++.+..          |++.+|..++++.+..++|..+|+.++..+....
T Consensus       363 ~~~g~~~~~~~~~~~~~~----------p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       363 VLAQLKFMPFLVLLARLC----------PSGCESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHccHHHHHHHhC----------CCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999887          5788999999999999999999998888776543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.57  E-value=0.018  Score=55.11  Aligned_cols=331  Identities=16%  Similarity=0.154  Sum_probs=169.3

Q ss_pred             hhHHHHHHHhCcchhhhhhhH-HHHHHHHHhhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchh
Q 013318           77 LVASLVVRVLGSKNALILGTT-GYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVI  155 (445)
Q Consensus        77 l~~g~l~dr~G~k~~l~~g~~-~~~~~~~~~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~r  155 (445)
                      ++.=.+.|-.-.|+++++-.+ ...+.....+.++...+=+.-++-|...+... +-.+|+=.          +.+|+++
T Consensus        60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-AYysYIYs----------~Vd~~~Y  128 (433)
T KOG3810|consen   60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-AYYSYIYS----------KVDPEMY  128 (433)
T ss_pred             HHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-hhhheeee----------ecCHHHH
Confidence            344468899999998887654 33444444455666655556677777654322 22333322          2357888


Q ss_pred             hhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc----Cccc--
Q 013318          156 GSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK----GEKE--  229 (445)
Q Consensus       156 g~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~----~~~~--  229 (445)
                      .++.|..-+..-.|-..|..++-.+.....         .+....-+ +-.....++.++.+|+|.+++.    ++++  
T Consensus       129 qrvt~y~RaA~L~g~~~g~vlaQlLvs~~~---------~sy~~LN~-ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~  198 (433)
T KOG3810|consen  129 KRVTGYCRAAFLVGKFVGSVLAQLLVSLET---------LSYTTLNY-ISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI  198 (433)
T ss_pred             HHHHHHhHHHHHHHhHHHhHHHHHHhhhcc---------cchhhhch-hhHHHHHHHHHHHhhCCCCchhhhhhcccccc
Confidence            899998888777777777777665543211         12222223 3334445666777888876532    1111  


Q ss_pred             ----cccc-chhhhhH-----HHHHHHHHHHhhccchhHH--HHHHHHHHHHHHHHHHhhhcccc-ccccccc--chhHH
Q 013318          230 ----TADA-SVNFYSY-----LVSLSKSITTLLADVRMLL--IIPLFAYSGLQQAFVWAEFTKEI-VTPALGV--SGVGG  294 (445)
Q Consensus       230 ----~~~~-~~~~~~~-----~~~~~~~~~~~l~~~~~~~--l~~~~~~~g~~~~f~~~~~~~~~-~~~~~~~--~~~g~  294 (445)
                          .++. +..+..+     .....++..+..++|+.+.  +.-.+-.+|+.+   ...|.+.+ .+-.-+.  ..-|.
T Consensus       199 ~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~Q---V~nY~Q~LW~~~~~~~~~vyNG~  275 (433)
T KOG3810|consen  199 SVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQ---VTNYTQILWKEVAPNPANVYNGA  275 (433)
T ss_pred             eeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHH---HHHHHHHHHHhhCCCchhhhcCH
Confidence                0000 0000111     1112234445567777643  332333344432   11122111 0000011  12344


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCc-cchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhh
Q 013318          295 AMAVYGAFDAICSLAAGRLTTGLPSI-TFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLS  373 (445)
Q Consensus       295 ~~~~~~i~~~~g~~~~G~l~d~~g~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  373 (445)
                      +-++..+..+++.+..|.+.-...|. ..++..+....+.+..  .+.++++     .++.++.+.++........+...
T Consensus       276 veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf--~m~~t~~-----Iw~~Ya~yvlfr~~y~l~itiA~  348 (433)
T KOG3810|consen  276 VEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLF--IMAQTQH-----IWVCYAGYVLFRVIYQLTITIAT  348 (433)
T ss_pred             HHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhh--hhhcccc-----eehhhhhHHHHHhhHhhhhhHHH
Confidence            55566666678888888876433332 3344555555444322  2344443     25677888888776666666655


Q ss_pred             HHHHhhccCCch-hhHHHHHHHHHHHHHHHHH--hh---------cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013318          374 ALLGILFKHDTE-GAFAQLKVWQCASIAVVFF--IG---------PY-ISLQAMLIVMVVGICVALVGILFLTIQVEK  438 (445)
Q Consensus       374 ~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~--i~---------~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  438 (445)
                      .-++....+++- -.||+..++.-+-..+-.+  ++         ++ .-+...+.+++++.++++.......+|.++
T Consensus       349 ~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~~  426 (433)
T KOG3810|consen  349 FQIARNLSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRRNKV  426 (433)
T ss_pred             HHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            555555544433 3688877765443333221  11         11 234556677777777776654434433333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.52  E-value=0.003  Score=59.11  Aligned_cols=110  Identities=19%  Similarity=0.118  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH-hhhc--chhhHHhHHHHhhhhhHHhhhhhhhHHHHhh
Q 013318           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (445)
Q Consensus        64 ~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~-~~~~--~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~  140 (445)
                      ..+.......+++++.|.+.||+|||+.+..+.......... ...+  +...++..|+.+|++.+..++....++.+..
T Consensus        44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  123 (338)
T COG0477          44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF  123 (338)
T ss_pred             HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            344455556667789999999999998888887653333222 2333  4788888999999999999999999999887


Q ss_pred             hhhhhccCCCcc-chhhhhhhHHHH-HHHHhhhhhhHHHHHhhcC
Q 013318          141 LSHASNHKLHEG-TVIGSFNGEFWG-MFASHQFVGNLITLAVLKD  183 (445)
Q Consensus       141 ~~~~~~~~~~~~-~~rg~~~g~~~~-~~~lg~~iG~li~~~l~~~  183 (445)
                      +          + ++|+...+.... ....|..+|+.++..+...
T Consensus       124 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         124 P----------EATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             C----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3          3 478888888887 5777888888766655433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.49  E-value=0.0027  Score=61.07  Aligned_cols=138  Identities=16%  Similarity=0.005  Sum_probs=103.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      +++.+..|+..+.+-++-.+.+++..++.+|+|.++. +..++++..++..  .-.+. +     ...++....+.|.+.
T Consensus        43 gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~-l~~~Llli~~G~~--iR~~~-~-----~~~L~~gt~l~G~gI  113 (395)
T COG2807          43 GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERS-LFLALLLIAAGIL--IRSLG-G-----LPLLFLGTLLAGAGI  113 (395)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH-HHHHHHHHHHHHH--HHhcc-c-----HHHHHHHHHHHHhhH
Confidence            4555678999999999999999999999999998874 4566555444432  22222 1     245777888999999


Q ss_pred             hhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcc----h-hHHHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY----I-SLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~----~-~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      +..|..++.++-+.||++.+...|+|..-.+.|++.+...+..    . +.+..+..-+...+++++.++..
T Consensus       114 av~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         114 AVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999988777888888888877776655532    2 45666777777777777777665

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.48  E-value=0.0032  Score=61.70  Aligned_cols=137  Identities=18%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             HHHHhhhhccccCCC-----CccchHhHHHHHHHHHHHHHH---hhccC-----C-CCccchhHHHHHHHHHhhhhhhhh
Q 013318          304 AICSLAAGRLTTGLP-----SITFIVSGGAIAQVVVFLWIL---INYSV-----T-SGVLGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       304 ~~g~~~~G~l~d~~g-----~~~~~i~~g~~~~~~~~~~~~---~~~~~-----~-~~~~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      ...++.+|+.+|+-+     ||.+.++.|.++...+.....   .....     + +...+.....+.+.++|+|.+..+
T Consensus        28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~  107 (403)
T PF03209_consen   28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG  107 (403)
T ss_pred             HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence            356889999999988     888888888876555432111   11111     1 111222345677888999999999


Q ss_pred             hhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHH-----HhhcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013318          370 TQLSALLGILFKHDTEG-AFAQLKVWQCASIAVVF-----FIGPYISL---QAMLIVMVVGICVALVGILFLTIQVEKAF  440 (445)
Q Consensus       370 ~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~-----~i~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  440 (445)
                      +...+++.|..|+|+++ +.++......+|..++.     .++++-..   .+.-....+...+.++..+..|+|.++++
T Consensus       108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~  187 (403)
T PF03209_consen  108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRA  187 (403)
T ss_pred             HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc
Confidence            99999999999887654 66766666566665543     34443221   12223333444555666667777765554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.43  E-value=0.043  Score=54.36  Aligned_cols=92  Identities=12%  Similarity=0.022  Sum_probs=50.9

Q ss_pred             HhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCcc
Q 013318           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG  152 (445)
Q Consensus        74 i~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~  152 (445)
                      +..+.+|+..+|...+.=...+.++..+..+.. +.++...=+++-++.+++.|.--.....+.. ..           +
T Consensus        74 ~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y-----------~  141 (402)
T PF02487_consen   74 LVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY-----------G  141 (402)
T ss_pred             HHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc-----------C
Confidence            456789999999886555555555544444432 4566655555556666666654333333322 21           1


Q ss_pred             chhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          153 TVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       153 ~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      +   ...+-+.++.+.++++|++.-..+
T Consensus       142 ~---~~l~~wssGTG~aGl~Ga~~y~~l  166 (402)
T PF02487_consen  142 K---SSLSAWSSGTGGAGLVGALYYLGL  166 (402)
T ss_pred             c---cccccccCCcChhhHHHHHHHHHH
Confidence            1   234545555666777777554433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.12  E-value=0.005  Score=65.33  Aligned_cols=140  Identities=16%  Similarity=0.151  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHhhhhccccCC-CCccchHhHHHHHHHHHHHHHHhhccCCCC---ccchhHHHHHHHHHhhhhhhhh
Q 013318          294 GAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSG---VLGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       294 ~~~~~~~i~~~~g~~~~G~l~d~~-g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      .+...+....-+..+++|++.|+. |+++. +..+.++..++.++  +...+.+.   .......++..++.++|.+...
T Consensus        27 ~i~~~f~~l~yl~pilGg~iAD~~lG~~~t-Il~~~ii~~lG~~l--lai~a~~~~~~~~~~~~~l~gLaLia~G~GgiK  103 (654)
T TIGR00926        27 VLFHTFTYLCYLTPLIGAIIADGWLGKFKT-ILYLSIVYVVGHAL--LSFGAIPSSGHPLHDLLDLLGLALIALGTGGIK  103 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHH--HHhccCcccccchHHHHHHHHHHHHHhhccccc
Confidence            334444444456667788999885 66654 45666666665432  22221111   0001235566777888899999


Q ss_pred             hhhhHHHHhhccCC-ch---hhHHHHHHHHHHHHHHHHHhhcch-----------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          370 TQLSALLGILFKHD-TE---GAFAQLKVWQCASIAVVFFIGPYI-----------SLQAMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       370 ~~~~~~l~~~~~~~-~~---~a~~~~~~~~~~g~~ig~~i~~~~-----------~~~~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                      |...+..++.++++ ++   +.|.++....++|+.++..+.++.           ++...+.+.+++.+++++.+..-.+
T Consensus       104 p~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k  183 (654)
T TIGR00926       104 PCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSK  183 (654)
T ss_pred             cCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999653 22   256777777778887776665443           3566778888888888777765444


Q ss_pred             HH
Q 013318          435 QV  436 (445)
Q Consensus       435 ~~  436 (445)
                      ++
T Consensus       184 ~y  185 (654)
T TIGR00926       184 MY  185 (654)
T ss_pred             cc
Confidence            43

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.10  E-value=0.0014  Score=49.01  Aligned_cols=51  Identities=16%  Similarity=0.073  Sum_probs=41.9

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhH
Q 013318          276 AEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSG  326 (445)
Q Consensus       276 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~  326 (445)
                      +.++.++.+.+++..++|.+.++..+...++++++|++.||.++++.++..
T Consensus        21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence            445555556788888999999999999999999999999999988755433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.02  E-value=0.016  Score=61.48  Aligned_cols=131  Identities=15%  Similarity=0.105  Sum_probs=80.3

Q ss_pred             HhhhhHHHHHH-HhCcchhhhhhhHHHHHHHHHh-hh--cc------hhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhh
Q 013318           74 CFSLVASLVVR-VLGSKNALILGTTGYWLFVAAN-LF--PS------WYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (445)
Q Consensus        74 i~~l~~g~l~d-r~G~k~~l~~g~~~~~~~~~~~-~~--~~------~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~  143 (445)
                      +..++.|.+.| ++|+++++.++.+++.+..+.. ..  +.      ....+.+=++..+|.|+.=+...+...+-.++ 
T Consensus        38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~-  116 (654)
T TIGR00926        38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE-  116 (654)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc-
Confidence            45667889999 5999999999998776644322 21  11      12233444667778888888878777776531 


Q ss_pred             hhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 013318          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM  216 (445)
Q Consensus       144 ~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~  216 (445)
                            .++++|-+++.+++.+.++|..++.++...+..... |-   ....+|. ..|.+.++++++++++.
T Consensus       117 ------~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~-~f---g~~~~~~-~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       117 ------RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVG-CF---GCQDCYP-LAFGVPAILMILALIVF  178 (654)
T ss_pred             ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc---ccCcchH-HHHHHHHHHHHHHHHHH
Confidence                  012346777888888888888888877666542211 00   0013453 34555566565555544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.92  E-value=0.057  Score=52.23  Aligned_cols=87  Identities=15%  Similarity=-0.023  Sum_probs=59.7

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhh
Q 013318          284 TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  363 (445)
Q Consensus       284 ~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  363 (445)
                      +.++..++++..+...-..+++...+.|.+.||+|||+.- +.-.+++.++.+.     ...++   +.++++.-++-|+
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c-l~~cily~~scl~-----k~~~~---~~~L~~GRvlgGi  133 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC-LLFCILYSLSCLT-----KHSSN---YPVLLLGRVLGGI  133 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH-HHHHHHHHHHHHH-----Hhccc---cHHHHHHHHHHHH
Confidence            3466667888888888888899999999999999999844 3444455544321     11222   3567778888899


Q ss_pred             hhhhhhhhhh-HHHHhh
Q 013318          364 GDGVLNTQLS-ALLGIL  379 (445)
Q Consensus       364 ~~~~~~~~~~-~~l~~~  379 (445)
                      +.+...+.-- +++.|.
T Consensus       134 aTSLLfS~FEsW~V~Eh  150 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEH  150 (354)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            8888776444 455554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.0038  Score=63.88  Aligned_cols=130  Identities=15%  Similarity=-0.013  Sum_probs=89.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhh
Q 013318          289 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  368 (445)
Q Consensus       289 ~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  368 (445)
                      -.+.+.+.+++.++.+++.++.|.+.||++-.+.+...+ ++..+. . .+..+.++     ...+++.-++.|+..++.
T Consensus        80 ~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~-~~w~~~-~-~~~~~~~s-----~~~~ialr~llGl~es~~  151 (495)
T KOG2533|consen   80 GNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG-ILWGLF-G-FLTAAVHS-----FPGLIALRFLLGLFESGG  151 (495)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH-HHHHHH-H-HHHHHHhh-----hHHHHHHHHHHHHHhccc
Confidence            346777888999999999999999999998444222222 222111 1 12223333     245677889999999999


Q ss_pred             hhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc----------hhHHHHHHHHHHHHHHHH
Q 013318          369 NTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY----------ISLQAMLIVMVVGICVAL  426 (445)
Q Consensus       369 ~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~----------~~~~~~~~i~~~~~~~~~  426 (445)
                      .|....+++.-|.++ ++..+|++...+++|..+|.+++..          .++.|.|.+-+++.++..
T Consensus       152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g  220 (495)
T KOG2533|consen  152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG  220 (495)
T ss_pred             chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence            999999999999765 4457899888887777776666533          256777777666555444

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.12  Score=51.53  Aligned_cols=28  Identities=14%  Similarity=0.110  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHhhhhccccCCCCccch
Q 013318          296 MAVYGAFDAICSLAAGRLTTGLPSITFI  323 (445)
Q Consensus       296 ~~~~~i~~~~g~~~~G~l~d~~g~~~~~  323 (445)
                      +..+.+...+-+....++.||+|.|+++
T Consensus       338 L~ins~~lgi~S~~~~~l~~~~g~r~~y  365 (498)
T KOG0637|consen  338 LMLNSIVLGIYSLLVEKLSRKFGTRKRY  365 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcceEE
Confidence            4567777788888899999999955533

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.72  E-value=0.0001  Score=74.82  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCC-CccchhHHHHHHHHHhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS-GVLGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      ..+...+...++..+|++++|+++||+|||+.+ ..+.++..++.+  +..+.++. +   +..+.+.-++.|++.+...
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~-~~~~~~~~i~~~--~~~~~~~~~~---~~~~~~~R~~~G~~~g~~~  120 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPAL-IISALLMIIGSI--LIAFAPSYNN---FWMLLIGRFLIGFGIGGAY  120 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccc-cccccccccccc--cccccccccc---ccccccccccccccccccc
Confidence            456777888999999999999999999999754 455555555432  23444411 1   2456677888999999999


Q ss_pred             hhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhh
Q 013318          370 TQLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIG  406 (445)
Q Consensus       370 ~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~  406 (445)
                      +..+.++.|..|++.+. ..+..+....+|..++..+.
T Consensus       121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccc
Confidence            99999999999877554 45567776677766655444

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.33  E-value=0.01  Score=58.78  Aligned_cols=145  Identities=12%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHH--HhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccC----CCCccchHhHHHHHHHHHHHH
Q 013318          264 FAYSGLQQAFV--WAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTG----LPSITFIVSGGAIAQVVVFLW  337 (445)
Q Consensus       264 ~~~~g~~~~f~--~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~----~g~~~~~i~~g~~~~~~~~~~  337 (445)
                      ....|.+.++.  .++.++++.+-+..-++.+.+-...-+...+.+++.|..+||    +|||++.+..+....++++.+
T Consensus        39 ~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~L  118 (498)
T KOG0637|consen   39 SIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFL  118 (498)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhh
Confidence            34455554332  344555543222222333333333334456777788999986    689999888877776666542


Q ss_pred             HHhhccC--------CCCc--cchh--HHHHHHHHHhhhhhhhhhhhhHHHHhhcc-CCchh-hHHHHHHHHHHHHHHHH
Q 013318          338 ILINYSV--------TSGV--LGTL--YPLIMAALLGIGDGVLNTQLSALLGILFK-HDTEG-AFAQLKVWQCASIAVVF  403 (445)
Q Consensus       338 ~~~~~~~--------~~~~--~~~~--~~~~~~~l~G~~~~~~~~~~~~~l~~~~~-~~~~~-a~~~~~~~~~~g~~ig~  403 (445)
                        +.+.+        +..-  ...+  +..+..-++=++....+...-+++.|+.. +++.+ |++.+.++.++|..+||
T Consensus       119 --ig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY  196 (498)
T KOG0637|consen  119 --IGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGY  196 (498)
T ss_pred             --hhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeee
Confidence              23322        2110  0011  12233333444444556667799999984 44555 89999999999999999


Q ss_pred             Hhhcchh
Q 013318          404 FIGPYIS  410 (445)
Q Consensus       404 ~i~~~~~  410 (445)
                      ...++++
T Consensus       197 ~~g~y~~  203 (498)
T KOG0637|consen  197 ALGSYLG  203 (498)
T ss_pred             ecccccC
Confidence            8876653

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.11  E-value=0.048  Score=40.64  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcchhhhhhhHH
Q 013318           31 HILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGTTG   98 (445)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k~~l~~g~~~   98 (445)
                      +.+....++.|.+.....+..|...++.+++....+++.+    ...+++++.|.++||+++++.++.....
T Consensus         3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    3 LPLKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3445556666666666556666666667787776666555    3456778899999999999988776653

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.04  E-value=0.029  Score=55.52  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=77.4

Q ss_pred             HhHHHHHHHHHHHHH-HhhccCCC-CccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-ch---hhHHHHHHHHHH
Q 013318          324 VSGGAIAQVVVFLWI-LINYSVTS-GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TE---GAFAQLKVWQCA  397 (445)
Q Consensus       324 i~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~---~a~~~~~~~~~~  397 (445)
                      +..|.++..++.++. +...++.. +......+++...+.++|.|...|.+.++.+|.++++ ..   +.|..+....++
T Consensus         4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~   83 (372)
T PF00854_consen    4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI   83 (372)
T ss_dssp             HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence            346666666665421 11222211 0011246777788899999999999999999999765 22   367888888899


Q ss_pred             HHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013318          398 SIAVVFFIGPYI----SLQAMLIVMVVGICVALVGILFLTIQVEKA  439 (445)
Q Consensus       398 g~~ig~~i~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  439 (445)
                      |+.++....++.    ++.+.|.+..+..+++.+.++.-.++++++
T Consensus        84 G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   84 GSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            999998777664    577888888888888888776554444444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.83  E-value=0.61  Score=47.57  Aligned_cols=64  Identities=8%  Similarity=0.086  Sum_probs=39.0

Q ss_pred             hhhHHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhhcchh----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 013318          371 QLSALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIGPYIS----------------LQAMLIVMVVGICVALVGILFLT  433 (445)
Q Consensus       371 ~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~  433 (445)
                      .-+....|++..++++ -|+++..+.++|..++..+..+++                ....+.+..+++.+...++.+++
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~  228 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVN  228 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888988766654 589888888888777654443322                11233444445556666666665


Q ss_pred             H
Q 013318          434 I  434 (445)
Q Consensus       434 ~  434 (445)
                      +
T Consensus       229 ~  229 (472)
T TIGR00769       229 R  229 (472)
T ss_pred             h
Confidence            4

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.67  E-value=2.9  Score=42.52  Aligned_cols=73  Identities=12%  Similarity=0.145  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhc--ccccccccccchhHHHHHHHHHHHHHHHhhhhccc
Q 013318          240 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT--KEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT  314 (445)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~--~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~  314 (445)
                      +.++..+.+++.+|-|.+..+.......-+  +|..++=.  .-+.+.|+..+..+......--.+++.....||.+
T Consensus       263 ~i~~~Y~~l~~ilkLp~V~~li~ilL~~Ki--gF~a~da~T~LKLlEkG~~KE~LAl~~li~~P~qii~~~~~~Kws  337 (544)
T PF13000_consen  263 SIKDVYKSLWKILKLPNVQTLIIILLTAKI--GFQANDAVTSLKLLEKGLSKEDLALLVLIDFPFQIILPYYIGKWS  337 (544)
T ss_pred             hHHHHHHHHHHHHcCchHHHHHHHHHHHHh--ccccchhhhHHHHHHcCCCHHHhHHHHHHhhhHHHHHHHHhhhhh
Confidence            345666778888888888766554433222  22211111  12346777777666654444444555555555554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.98  E-value=0.47  Score=40.62  Aligned_cols=94  Identities=16%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             HHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhh
Q 013318          300 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL  379 (445)
Q Consensus       300 ~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~  379 (445)
                      .....+..++.+.+.+++|.|+.+ .+|.+...+-.+ .  .+-++     ...++...++.|++.+..++..-.++.+.
T Consensus        47 Y~~~~~s~l~~P~iv~~lg~K~sm-~lg~~~y~~y~~-~--~~~~~-----~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNKLGPKWSM-ILGSLGYAIYIA-S--FFYPN-----SYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHhHHHHHHHHhhHHHH-HHHHHHHHHHHH-H--HHhhh-----HHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            333455666677788889988754 566655543221 1  12222     24678889999999999888877888777


Q ss_pred             ccCC-chhhHHHHHHHHHHHHHHH
Q 013318          380 FKHD-TEGAFAQLKVWQCASIAVV  402 (445)
Q Consensus       380 ~~~~-~~~a~~~~~~~~~~g~~ig  402 (445)
                      .+++ +++-.+++-.+...+..+|
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G  141 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFG  141 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHH
Confidence            6544 3334454444444444444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.91  E-value=0.94  Score=45.27  Aligned_cols=116  Identities=13%  Similarity=0.023  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCC-CCccchhHHHHHHHHHhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT-SGVLGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      ..-....++.+.++...+.+-|+.||.|-|..+ +++..++.++-..-...-.|. ++.+..-+....-.+-+.+.-...
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~-llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim  158 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTAL-LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL  158 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHH-HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence            444556678888888888899999999988754 577777666532111111111 011101123333444344332222


Q ss_pred             hhhhHHHHh-hccCC-chhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          370 TQLSALLGI-LFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       370 ~~~~~~l~~-~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      . +++-+++ -||++ +..|.+.--+...+|.++|+++.|.
T Consensus       159 ~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppi  198 (480)
T KOG2563|consen  159 G-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPI  198 (480)
T ss_pred             c-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccce
Confidence            2 2223334 35554 4456655555666888888877754

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.81  E-value=0.45  Score=47.26  Aligned_cols=65  Identities=12%  Similarity=0.075  Sum_probs=50.9

Q ss_pred             hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhh
Q 013318          107 LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (445)
Q Consensus       107 ~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~  181 (445)
                      +.|+.+.+++.-+..|+-.|..++.....+.+-.          ++++|...+|.....-+.|..++++++..+.
T Consensus       331 fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~----------~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  331 FIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEV----------PPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3578888877888999999988876655554432          5789999999999889999999988887653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.75  E-value=5.4  Score=40.44  Aligned_cols=149  Identities=12%  Similarity=0.074  Sum_probs=81.6

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHhhhhhhccC-CCCchHHH---HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISL---GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~~~~---~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      ..++.++-+++.++|+...|...-++-+++... .+-.....   -...-+..+..++..++.+++.+.++.-+-...+.
T Consensus        24 ~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~  103 (509)
T COG3202          24 YELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFL  103 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            477888899999999888887766665554322 12112211   11111233455677888999999998876665554


Q ss_pred             HHHHHh---hhcch----hhHHhHHHHhhhhh---------------------HHhhhh------hhhHHHHhhhhhhhc
Q 013318          101 LFVAAN---LFPSW----YTMVPASLYLGFAA---------------------SIIWVG------EGTYLTAAALSHASN  146 (445)
Q Consensus       101 ~~~~~~---~~~~~----~~li~~r~l~Gig~---------------------g~~~~~------~~~~i~~~~~~~~~~  146 (445)
                      .+.+.+   .+|.-    +-....|=+++..-                     +=+|++      -.....|.+      
T Consensus       104 ~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit------  177 (509)
T COG3202         104 GFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT------  177 (509)
T ss_pred             HHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Confidence            433332   22210    00001111111111                     001211      112223333      


Q ss_pred             cCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcC
Q 013318          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (445)
Q Consensus       147 ~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~  183 (445)
                          ..+|-.|.++++..+.+++..+++.+...+..+
T Consensus       178 ----t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         178 ----TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             ----hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                345778899999999999998888777776653

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.74  E-value=0.41  Score=48.75  Aligned_cols=149  Identities=18%  Similarity=0.161  Sum_probs=89.8

Q ss_pred             cccCcccccchhHHH-HHHHHHHHHHHhhhHhhhhh-hccCCCCchHHHHHHH----HHHHHhhhh-HHHHHHHhCcchh
Q 013318           19 QVLTPKNYTRDVHIL-SCAFLLIFLAYGAAQNLETT-VNTEGNLGTISLGILY----TSFTCFSLV-ASLVVRVLGSKNA   91 (445)
Q Consensus        19 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~~~~~~~~----~~~ai~~l~-~g~l~dr~G~k~~   91 (445)
                      +++++.+..|..+.+ ...+++........+-.... +....+++....+-+.    ....+++++ .+.+...+|.|++
T Consensus       231 ~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~  310 (463)
T KOG2816|consen  231 QSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL  310 (463)
T ss_pred             hhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            444444555555543 34444444444333311122 1223666665544322    233456655 5588889999998


Q ss_pred             hhhhhHHHHHHHHH-hhhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhh
Q 013318           92 LILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ  170 (445)
Q Consensus        92 l~~g~~~~~~~~~~-~~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~  170 (445)
                      ..+|++.-.+-.+. .++++.+.++...++.+ ..+...++..++++.+.          +++|+|++.++....-.++.
T Consensus       311 i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v----------~~~e~g~v~~~is~i~~l~~  379 (463)
T KOG2816|consen  311 ISLGLLSEFLQLLLFAFATETWMMFAAGVVVA-LAGIVFPAIRAFASILV----------SPEEQGKVFGIISGIEGLSG  379 (463)
T ss_pred             hhHHHHHHHHHHHHHHHhccchhhhHHHHHHH-hhcchhHHHHhHHHhhc----------ccccccchhhHHHHHHHHhh
Confidence            88888765543333 24555555554544444 44556667777777776          57899999999999999998


Q ss_pred             hhhhHHHH
Q 013318          171 FVGNLITL  178 (445)
Q Consensus       171 ~iG~li~~  178 (445)
                      .+++.+-.
T Consensus       380 ~~~~~~~~  387 (463)
T KOG2816|consen  380 VVSPALYG  387 (463)
T ss_pred             hhhHHHHH
Confidence            88886543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.34  E-value=1.3  Score=40.96  Aligned_cols=110  Identities=24%  Similarity=0.202  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhh
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  370 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  370 (445)
                      ..+.......+...++.++.|++.||.|||+ .+..+......+.+  ...+.++..   .....+.....|++.+...+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~  113 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-VLIIGLLLFLLGTL--LLALAPNVG---LALLLILRLLQGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchH-HHHHHHHHHHHHHH--HHHhCccch---HHHHHHHHHHHHhhhHHHHH
Confidence            4677778888888888899999999998875 34444433222211  112222211   23444555557888888888


Q ss_pred             hhhHHHHhhccC--CchhhHHHHHH-HHHHHHHHHHHhh
Q 013318          371 QLSALLGILFKH--DTEGAFAQLKV-WQCASIAVVFFIG  406 (445)
Q Consensus       371 ~~~~~l~~~~~~--~~~~a~~~~~~-~~~~g~~ig~~i~  406 (445)
                      ...+++.+.+|+  +++...+.... ....|..++..+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLA  152 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999986  34445555544 3445555554333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.98  E-value=0.37  Score=47.67  Aligned_cols=108  Identities=13%  Similarity=0.033  Sum_probs=73.0

Q ss_pred             hhhhhhhHHHHHHHHHh---hh-cc------hhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhh
Q 013318           90 NALILGTTGYWLFVAAN---LF-PS------WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN  159 (445)
Q Consensus        90 ~~l~~g~~~~~~~~~~~---~~-~~------~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~  159 (445)
                      |++++|.+++.+.....   .. +.      ...++++=.+.++|.|..=+....++++-.+++       .+++|.+++
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~-------~~~~~~~~F   74 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED-------DDSRRDSFF   74 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT-------TTTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc-------chhhhhhhH
Confidence            45667777666544431   11 22      256677778899999999988888888887542       256788899


Q ss_pred             hHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 013318          160 GEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM  216 (445)
Q Consensus       160 g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~  216 (445)
                      .+++...++|..++..+...+.++           ++|. ..|.+..+.++++.+..
T Consensus        75 ~~fY~~in~G~~~~~~~~~~i~~~-----------~~~~-~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   75 NWFYWGINIGSLFSPTLVPYIQQN-----------YGWF-LGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHC-----------S-HH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHhhcccchhhccc-----------cchh-hhhhHHHHHHHHHHHHH
Confidence            999999999999998877776533           3453 34555555555555544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03612 spermidine synthase; Provisional

Probab=93.82  E-value=1.9  Score=44.71  Aligned_cols=26  Identities=8%  Similarity=-0.031  Sum_probs=17.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccC
Q 013318          291 GVGGAMAVYGAFDAICSLAAGRLTTG  316 (445)
Q Consensus       291 ~~g~~~~~~~i~~~~g~~~~G~l~d~  316 (445)
                      ..+.+.+++-.+..+|+.+.+++.++
T Consensus        51 ~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         51 QFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34556666777777787777776543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=93.69  E-value=0.84  Score=42.25  Aligned_cols=81  Identities=11%  Similarity=-0.046  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHhhhhccccCCCCccchHhH----HHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhh
Q 013318          294 GAMAVYGAFDAICSLAAGRLTTGLPSITFIVSG----GAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       294 ~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  369 (445)
                      ....++-.+..+|-+..|..++..-+||+.+..    |.++..+..+. .....++.. .+....++..++.|++.-..|
T Consensus       145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~-~~~~g~~~~-~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVV-VYFVGPGNA-AGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHhCcchH-HHHHHHHHHHHHHHHHHHhhh
Confidence            334455555556667778777654444444332    22222222111 112233321 112345666667777766666


Q ss_pred             hhhhHHH
Q 013318          370 TQLSALL  376 (445)
Q Consensus       370 ~~~~~~l  376 (445)
                      +++..+.
T Consensus       223 ~ViL~lP  229 (267)
T PF07672_consen  223 GVILNLP  229 (267)
T ss_pred             HHHhcCh
Confidence            6544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.26  E-value=0.72  Score=46.73  Aligned_cols=121  Identities=13%  Similarity=0.067  Sum_probs=68.0

Q ss_pred             HHHhhhhccccCCC----CccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhc
Q 013318          305 ICSLAAGRLTTGLP----SITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF  380 (445)
Q Consensus       305 ~g~~~~G~l~d~~g----~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~  380 (445)
                      ...++.|.++|.+.    ||+..++++.++..+.... +...+.....  .....+..++..+|.+......-++..|..
T Consensus        39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~-~~~~~~~~~s--~~~~~~~l~la~~g~a~~DV~aDa~vvE~~  115 (433)
T PF03092_consen   39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALV-LALLPASESS--AAIAVVLLFLASFGYAFADVAADALVVELA  115 (433)
T ss_pred             HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHH-HHhcccccch--hhhHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            44677899999874    6666777777766544321 2222221111  123334445556666666666677888877


Q ss_pred             cCCchh---hHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHH
Q 013318          381 KHDTEG---AFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVG  428 (445)
Q Consensus       381 ~~~~~~---a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~  428 (445)
                      .++...   .-+.....+.+|..++..+.+.    .+..+.+.+...+..+..+.
T Consensus       116 ~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen  116 RREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            544322   3456666677777766555533    34555666655554544433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.03  E-value=11  Score=38.11  Aligned_cols=110  Identities=17%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHH-HHhhccCCCC---cc-chhHHHHHHHHHhhhhhh
Q 013318          293 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW-ILINYSVTSG---VL-GTLYPLIMAALLGIGDGV  367 (445)
Q Consensus       293 g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~-~~~~~~~~~~---~~-~~~~~~~~~~l~G~~~~~  367 (445)
                      -.....+.++-.+|+.+..+..- -++|.+.+.+..++-.+.+-+ .+....+...   .. .-...++..+++|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            34566899999999987665321 111211222333332221111 1112221100   00 013455678888998877


Q ss_pred             hhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHH
Q 013318          368 LNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVF  403 (445)
Q Consensus       368 ~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~  403 (445)
                      ..+.......+..+++ ++.+-.+..+...+|..+|-
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs  425 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGA  425 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666555555555433 33343455555555555443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.06  E-value=0.56  Score=49.90  Aligned_cols=172  Identities=14%  Similarity=0.101  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccc--cchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHh
Q 013318          263 LFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI  340 (445)
Q Consensus       263 ~~~~~g~~~~f~~~~~~~~~~~~~~~--~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~  340 (445)
                      ..+..+...+++.+..+.  .++-++  .++.|++...+-+++.+...+..+..-|..|-+ ++-.|.++.+++-++.  
T Consensus       105 ~~~~q~l~~~y~~s~Itt--iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr-~Ig~G~~~m~lgsll~--  179 (735)
T KOG3626|consen  105 AAFAQGLYVGYFNSVITT--IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR-WIGIGLVLMGLGSLLF--  179 (735)
T ss_pred             HHHHHHhhhhhhhhhhhh--hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccc-eeeechhHHHHHHHHH--
Confidence            344445444444333332  233333  346777777788888888877777777765444 5566666554432211  


Q ss_pred             hccC------------------CC---------------------Cc--------cchhHHHHHHHHHhhhhhhhhhhhh
Q 013318          341 NYSV------------------TS---------------------GV--------LGTLYPLIMAALLGIGDGVLNTQLS  373 (445)
Q Consensus       341 ~~~~------------------~~---------------------~~--------~~~~~~~~~~~l~G~~~~~~~~~~~  373 (445)
                      ..++                  .+                     +.        ..+.++++.-++.|+|..-.+|.-.
T Consensus       180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi  259 (735)
T KOG3626|consen  180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI  259 (735)
T ss_pred             hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence            1110                  00                     00        0112445677788999888888777


Q ss_pred             HHHHhhccCCchh-hHHHHHHHHHHHHHHHHHhhcc----------------------hh-HHHHHHHHHHHHHHHHHHH
Q 013318          374 ALLGILFKHDTEG-AFAQLKVWQCASIAVVFFIGPY----------------------IS-LQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       374 ~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig~~i~~~----------------------~~-~~~~~~i~~~~~~~~~~~~  429 (445)
                      +++=|...++..+ ..|+......+|.++|++++..                      .+ ++..|.+++.+.+++.+.+
T Consensus       260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~  339 (735)
T KOG3626|consen  260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL  339 (735)
T ss_pred             ccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            8887766554444 4689989999999999877521                      22 3446888888888888888


Q ss_pred             HHHHHHHHhh
Q 013318          430 LFLTIQVEKA  439 (445)
Q Consensus       430 ~~~~~~~~~~  439 (445)
                      ++.-++++++
T Consensus       340 f~fPk~lp~~  349 (735)
T KOG3626|consen  340 FFFPKELPKS  349 (735)
T ss_pred             HhCcccCccc
Confidence            8876666543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.63  E-value=15  Score=36.45  Aligned_cols=107  Identities=19%  Similarity=0.240  Sum_probs=53.5

Q ss_pred             HHHHHH-HHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHH-HHHHhhccCCCCccc-hhHHHHHHHHHhhhhhhhh
Q 013318          293 GGAMAV-YGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVF-LWILINYSVTSGVLG-TLYPLIMAALLGIGDGVLN  369 (445)
Q Consensus       293 g~~~~~-~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~~~~~  369 (445)
                      -..... +.+...+|+....++.++ ++|+..  +..++-.+.+ +..+..+.|.+...+ -....+...++|+..|=..
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~--i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWP-DPRKLT--IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCC-CCceeh--HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            334445 899999998888887665 344432  2222222211 001122222111100 1345566777888777666


Q ss_pred             hhhhHHHHhhccCCchhhHH-HHHHHHHHHHHHH
Q 013318          370 TQLSALLGILFKHDTEGAFA-QLKVWQCASIAVV  402 (445)
Q Consensus       370 ~~~~~~l~~~~~~~~~~a~~-~~~~~~~~g~~ig  402 (445)
                      +....+..+.+|++...+-| +..++...|...|
T Consensus       362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G  395 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALG  395 (406)
T ss_pred             hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence            66556666666544333333 4444444454444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=91.00  E-value=3.8  Score=41.51  Aligned_cols=59  Identities=7%  Similarity=-0.000  Sum_probs=38.3

Q ss_pred             hhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHh
Q 013318          112 YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (445)
Q Consensus       112 ~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l  180 (445)
                      ...++.-++.|+..|-..+....+..+..          +++||..+-.+...+..+|..+|..++..+
T Consensus       373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v----------~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYLGSLSMCLAPRQV----------DPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444578889998877766655554443          356776666665666677778887776544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.96  E-value=6.3  Score=39.99  Aligned_cols=79  Identities=16%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             HHHhCcchhhhhhhHHHHHHHHHh-h-----h-------------cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhh
Q 013318           83 VRVLGSKNALILGTTGYWLFVAAN-L-----F-------------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (445)
Q Consensus        83 ~dr~G~k~~l~~g~~~~~~~~~~~-~-----~-------------~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~  143 (445)
                      ++++|+++++.++..+..++.+.. .     +             |+.....+..+++|++.+..-+....++....   
T Consensus       306 ir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~---  382 (461)
T KOG3098|consen  306 IRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY---  382 (461)
T ss_pred             hhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh---
Confidence            467999999999988776655442 1     1             13545667789999999998888888888886   


Q ss_pred             hhccCCCccchhhhhhhHHHHHHHHhhhh
Q 013318          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFV  172 (445)
Q Consensus       144 ~~~~~~~~~~~rg~~~g~~~~~~~lg~~i  172 (445)
                              |++|.++++++-.-...+..+
T Consensus       383 --------~~~~~~~fsi~kfyq~~~s~v  403 (461)
T KOG3098|consen  383 --------PDDRAQAFSLFKFYQSVASCV  403 (461)
T ss_pred             --------cCchHHHHHHHHHHHHHHHHH
Confidence                    456777666654433444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=90.27  E-value=0.079  Score=55.13  Aligned_cols=119  Identities=16%  Similarity=0.054  Sum_probs=2.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHH-HHhhcc--C------C------------
Q 013318          287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW-ILINYS--V------T------------  345 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~-~~~~~~--~------~------------  345 (445)
                      +..+++|.+.+.+-++.++..++..++.+|-. |.+++-.|.++.+++.++ .+-.+.  +      +            
T Consensus        35 l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~h-rprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~  113 (539)
T PF03137_consen   35 LSSSQSGLISSSYDIGSLVVVLFVSYFGGRGH-RPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNL  113 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccc
Confidence            44457899999999999999999988888754 444566666655544321 110000  0      0            


Q ss_pred             C--------------------C-c-cchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchh-hHHHHHHHHHHHHHHH
Q 013318          346 S--------------------G-V-LGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEG-AFAQLKVWQCASIAVV  402 (445)
Q Consensus       346 ~--------------------~-~-~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~-a~~~~~~~~~~g~~ig  402 (445)
                      .                    . . ....++++.-++.|+|.+...+.-.+++=|..+++..+ ..|++.....+|.++|
T Consensus       114 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~G  193 (539)
T PF03137_consen  114 CDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALG  193 (539)
T ss_dssp             --------------------------------------SSS---------------------------------------
T ss_pred             ccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHH
Confidence            0                    0 0 00123456778889999888888889998888776655 4588888888898888


Q ss_pred             HHhh
Q 013318          403 FFIG  406 (445)
Q Consensus       403 ~~i~  406 (445)
                      ++++
T Consensus       194 f~lg  197 (539)
T PF03137_consen  194 FLLG  197 (539)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            7765

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=88.27  E-value=1.5  Score=33.26  Aligned_cols=61  Identities=15%  Similarity=0.031  Sum_probs=43.9

Q ss_pred             HHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHH
Q 013318          274 VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVF  335 (445)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~  335 (445)
                      +.+.+|....+.+++.++.|++.+...++..+|.+...++.++..+++ ++..+++...+..
T Consensus        11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~-~~~~~l~~~~~~~   71 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR-LLRAGLLLTVLST   71 (85)
T ss_pred             HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHH
Confidence            334555444455677788999999999999999999999888754443 5566666655543

Note that many members are hypothetical proteins.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=85.42  E-value=18  Score=36.58  Aligned_cols=140  Identities=15%  Similarity=0.137  Sum_probs=77.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHHHHHHHHH----HhhhhHHHHHHHhCcchhhhhhhHHHHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~a----i~~l~~g~l~dr~G~k~~l~~g~~~~~~~~  103 (445)
                      ..++..+++..+.|..-.+..+++.....+.+.+....+++-+..+    .+.+..|++.+|+|..|.=+++.....+..
T Consensus       258 q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  258 QPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            3445666666555554333334444444445777766666555443    356789999999999999888876543222


Q ss_pred             ----HHhhhcch--hhHHhHHHHhhhhhH--Hhhhh---hhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhh
Q 013318          104 ----AANLFPSW--YTMVPASLYLGFAAS--IIWVG---EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFV  172 (445)
Q Consensus       104 ----~~~~~~~~--~~li~~r~l~Gig~g--~~~~~---~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~i  172 (445)
                          ...+.+.-  ...-..-++.|+..+  ++|.-   ...++-|.          .|++|||...|...+..++--.+
T Consensus       338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~----------V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQEN----------VPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhccc----------CCHHHhhHHHHHHHHHHHHHHHH
Confidence                22333221  111112233344332  23332   22222222          36889999999888777666555


Q ss_pred             hhHHH
Q 013318          173 GNLIT  177 (445)
Q Consensus       173 G~li~  177 (445)
                      -..+.
T Consensus       408 ~~~~~  412 (432)
T PF06963_consen  408 SFVLT  412 (432)
T ss_pred             HHHHH
Confidence            54443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=83.13  E-value=23  Score=37.29  Aligned_cols=151  Identities=15%  Similarity=0.081  Sum_probs=79.1

Q ss_pred             HhhhhhhccCCCCchH----HHHHHHHHHHHhhhhHHHHHHH-hCcchhhhhhhHHHHHHHHHh----hh----c-----
Q 013318           48 QNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN----LF----P-----  109 (445)
Q Consensus        48 ~~~~~~i~~~~~~g~~----~~~~~~~~~ai~~l~~g~l~dr-~G~k~~l~~g~~~~~~~~~~~----~~----~-----  109 (445)
                      .++...+..+.+....    ....+.+......+..+.++|. +||=+++.++.+++.+...+.    ..    |     
T Consensus        58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~  137 (571)
T KOG1237|consen   58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF  137 (571)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence            3555555444444332    1333444444566788899995 788899999988765543221    11    1     


Q ss_pred             -------------chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhh--hhhhHHHHHHHHhhhhhh
Q 013318          110 -------------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIG--SFNGEFWGMFASHQFVGN  174 (445)
Q Consensus       110 -------------~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg--~~~g~~~~~~~lg~~iG~  174 (445)
                                   ....++.+--+..+|.|+.=+...++-++-.++      ..+++++.  ..+.+++...+.|..+..
T Consensus       138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~------~~~~~~~~~~~fFnW~yf~~~~g~l~a~  211 (571)
T KOG1237|consen  138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDE------LDPVEVKGIPSFFNWFYFSQNGGALLAQ  211 (571)
T ss_pred             CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCc------cCcchhhCcccchhHHHHHHHHHHHHHH
Confidence                         022455555666677777655544444554431      11233344  556666555565555555


Q ss_pred             HHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 013318          175 LITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM  216 (445)
Q Consensus       175 li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~  216 (445)
                      .+..+...           ..+|. +-|.+..+++.++++++
T Consensus       212 t~~vyiq~-----------~~~w~-lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  212 TVLVYIQD-----------NVGWK-LGFGIPTVLNALAILIF  241 (571)
T ss_pred             HHHHhhhh-----------cccce-eeccHHHHHHHHHHHHH
Confidence            44433321           12442 33555555555555443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=82.47  E-value=22  Score=35.16  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=38.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhcccc-----CCCCccchHhHHH
Q 013318          256 RMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTT-----GLPSITFIVSGGA  328 (445)
Q Consensus       256 ~~~~l~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d-----~~g~~~~~i~~g~  328 (445)
                      ++..+..++..+|+..+... ..|..+..++.+.+..+.....++=.+  -.+++..+.|     |+||||..+.-+.
T Consensus        32 ~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccceeeehH
Confidence            45666667777888765543 445444445555444444333222221  1234445555     9999986654443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=82.41  E-value=7.7  Score=29.38  Aligned_cols=63  Identities=22%  Similarity=0.096  Sum_probs=45.1

Q ss_pred             HhhhHhhhhhhccCCCCchHH----HHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh
Q 013318           44 YGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN  106 (445)
Q Consensus        44 ~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~  106 (445)
                      +.....+.|.+.+|.+++...    .+.-|..|-++++.+.++.++..+++.+..+.+...+.++..
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            334445677777777776544    566777888999999999988787888888877665555543

Note that many members are hypothetical proteins.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=81.52  E-value=9.6  Score=38.08  Aligned_cols=115  Identities=14%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             hhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhh
Q 013318          309 AAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGA  387 (445)
Q Consensus       309 ~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a  387 (445)
                      +...+.|.++.| ++++++.+...++..  ++.|.++     ...+-++-+++|.+.+.- ...++++=...|++ ..++
T Consensus        60 ~vflltd~l~Yk-pviil~~~~~i~t~~--lll~~~s-----v~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~v  130 (412)
T PF01770_consen   60 PVFLLTDYLRYK-PVIILQALSYIITWL--LLLFGTS-----VLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKV  130 (412)
T ss_pred             HHHHHHHHhhhh-HHHHHHHHHHHHHHH--HHHHHCc-----HHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHH
Confidence            345677887665 566777776666543  2345533     244567788888887663 34445544444443 2335


Q ss_pred             HHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHHHHH
Q 013318          388 FAQLKVWQCASIAVVFFIG------PYISLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       388 ~~~~~~~~~~g~~ig~~i~------~~~~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                      .|.-+....+|-.++.+++      ...++....++..+...++++..+++
T Consensus       131 ts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  131 TSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            5555555555544444333      24567777788777777777766654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 23/352 (6%)

Query: 21  LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGIL----YTSFTCFS 76
              ++Y     +L   F L  +A      L         L     G++    Y  +    
Sbjct: 19  GQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIP 78

Query: 77  LVASLVVRVLGSKNALILG----TTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGE 132
           + A ++++ L  K  +I G      G  LF  A    ++   +     +      +    
Sbjct: 79  IPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA 138

Query: 133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKV----CA 188
             ++T      + + +L+      SF      +F     + N+   +    DK+     +
Sbjct: 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS 198

Query: 189 ALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSI 248
           A            +++ + ++ L  +L+   +    + +  +     +F + L  L++  
Sbjct: 199 AYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIR 258

Query: 249 TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSL 308
               A      ++  F Y G Q A  W+   +  V    G++    A  + G        
Sbjct: 259 HWRWA------VLAQFCYVGAQTA-CWSYLIRYAVEEIPGMTAGFAANYLTGTM---VCF 308

Query: 309 AAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL 360
             GR  TG   I+       +A   +    L   S  +G    L  L + + 
Sbjct: 309 FIGRF-TGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSA 359

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 30/210 (14%), Positives = 53/210 (25%), Gaps = 84/210 (40%)

Query: 131 GEG-TYLTAAALSHASNHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKVCA 188
           G G T++         ++K+         + + FW            + L      +   
Sbjct: 160 GSGKTWVALDVCL---SYKVQC-----KMDFKIFW------------LNLKNCNSPETVL 199

Query: 189 ALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSI 248
            +L        LL+ +                   D      +D S N    + S+   +
Sbjct: 200 EML------QKLLYQI-------------------DPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 249 TTLLAD---VRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 305
             LL        LL+        L    V      +                   AF+  
Sbjct: 235 RRLLKSKPYENCLLV--------LLN--VQ---NAKAWN----------------AFNLS 265

Query: 306 C-SLAAGRLTTGLPSITFIVSGGAIAQVVV 334
           C  L    LTT    +T  +S      + +
Sbjct: 266 CKIL----LTTRFKQVTDFLSAATTTHISL 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.93
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.92
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
2xut_A	524	Proton/peptide symporter family protein; transport	99.85
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.1
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.06
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.96
2xut_A	524	Proton/peptide symporter family protein; transport	98.89
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.68
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.41

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=8.4e-29  Score=249.01  Aligned_cols=380  Identities=10%  Similarity=-0.013  Sum_probs=251.6

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchH----HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318           27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (445)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~  102 (445)
                      ++.++.+.++.++............|.+.++. .+..    ..+.......+++++.|++.||+|||++++++.++.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~  105 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  105 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence            34444555555555555444555666665555 4432    244555567788999999999999999999999988776


Q ss_pred             HHHh-h----hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHH
Q 013318          103 VAAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (445)
Q Consensus       103 ~~~~-~----~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~  177 (445)
                      .+.. +    .+++..+++.|+++|+|.+..+++..++++++.          ++++|++++|+......+|.++|++++
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~  175 (451)
T 1pw4_A          106 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLF  175 (451)
T ss_dssp             HHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6654 5    789999999999999999999999999999997          468999999999999999999999998


Q ss_pred             HHhhcCccccccccCCCCC-cchhHHHHHHHHHHHHHHH-HHhccCCcccCcc---cccccc----hhhhhHHHHHHHH-
Q 013318          178 LAVLKDDKVCAALLGGSTS-GTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEK---ETADAS----VNFYSYLVSLSKS-  247 (445)
Q Consensus       178 ~~l~~~~~~~~~~~~~~~~-w~~~~~~i~~~l~~~~~~l-~~~l~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~-  247 (445)
                      ..+...           .+ ||. .|.+.+++.++..++ .+++||+++.+++   +..+++    ..++.+.+...++ 
T Consensus       176 ~~l~~~-----------~g~w~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (451)
T 1pw4_A          176 LLGMAW-----------FNDWHA-ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI  243 (451)
T ss_dssp             HHHHHH-----------TCCSTT-CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHH
T ss_pred             HHHHHH-----------hccHHH-HHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccc
Confidence            765532           24 764 344555555444433 3567764332111   100000    0000000000111 


Q ss_pred             -HHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCC--CCccch
Q 013318          248 -ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFI  323 (445)
Q Consensus       248 -~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~--g~~~~~  323 (445)
                       ..+.+|+|+++......+..+........+++.++.+ .+.+..+.+.+.+..+++.++++++.|++.||+  ++|+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  323 (451)
T 1pw4_A          244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  323 (451)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence             2456788888766655444443332233444444433 345556788999999999999999999999999  887644


Q ss_pred             HhHHHHHHH-HHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHH-HHH
Q 013318          324 VSGGAIAQV-VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCA-SIA  400 (445)
Q Consensus       324 i~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~-g~~  400 (445)
                       ..+.++.. ++++  .+.+.++.+   .....+..++.|++.+...+..+++..+.+|++ ++.++|+++....+ |..
T Consensus       324 -~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~  397 (451)
T 1pw4_A          324 -GVFFMTLVTIATI--VYWMNPAGN---PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV  397 (451)
T ss_dssp             -HHHHHHHHHHHHH--HTTSCCTTC---HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHH--HHHHhcccC---HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence             34444433 4432  223333222   244556677788888888888889999999987 55688999998888 888


Q ss_pred             HHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          401 VVFFIGPY----ISLQAMLIVMVVGICVALVGILFLTIQ  435 (445)
Q Consensus       401 ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~  435 (445)
                      ++..+.+.    .++...+++.+++.+++.+..++..++
T Consensus       398 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          398 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77666543    356777777777777777766665433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=1.7e-28  Score=246.03  Aligned_cols=372  Identities=10%  Similarity=0.052  Sum_probs=236.6

Q ss_pred             cccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHH----HHHHHHHHhhhhHHHHHHHhCcchhhhhhhHH
Q 013318           23 PKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLG----ILYTSFTCFSLVASLVVRVLGSKNALILGTTG   98 (445)
Q Consensus        23 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~----~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~   98 (445)
                      .++.++.++.+.+++++....+.....+.|.+.++.+++....+    .......+++++.|++.||+|||++++++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            33455556666666666665555566667777766777665544    34445567888999999999999999999998


Q ss_pred             HHHHHHHh----hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhh
Q 013318           99 YWLFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (445)
Q Consensus        99 ~~~~~~~~----~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~  174 (445)
                      +++..+..    ..++++.+++.|++.|+|.+..+++..++++++.          |+++|++++|+......+|..+|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~  170 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAV  170 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHH
Confidence            87766543    4689999999999999999999999999999997          578999999999999999999999


Q ss_pred             HHHHHhh-cCccccc--------c--cc----CCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhh
Q 013318          175 LITLAVL-KDDKVCA--------A--LL----GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS  239 (445)
Q Consensus       175 li~~~l~-~~~~~~~--------~--~~----~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  239 (445)
                      +++..+. .....-+        .  ..    ....+||. .|.+.+++..+..++.++.+.|+++++++.++++    .
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~  245 (438)
T 3o7q_A          171 VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQT-PYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ----G  245 (438)
T ss_dssp             HHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST----T
T ss_pred             HHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHcCCcccccccccccc----c
Confidence            9988776 3321000        0  00    00001543 3444444433333333444444332221111111    1


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccc-cccc-ccccchhHHHHHHHHHHHHHHHhhhhccccCC
Q 013318          240 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKE-IVTP-ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL  317 (445)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~-~~~~-~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~  317 (445)
                      +.+   +...+.+|+|+++......+...........+.+.+ ..+. +.+....+......+++.++++++.|++.||+
T Consensus       246 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~  322 (438)
T 3o7q_A          246 SFS---ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF  322 (438)
T ss_dssp             SHH---HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chh---hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111   234467888888766554433332222222344444 3222 55566788888999999999999999999999


Q ss_pred             CCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHH
Q 013318          318 PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCA  397 (445)
Q Consensus       318 g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~  397 (445)
                      +||+. +..+.++..+++++  ..+.++      .......++.|++.+...+..+++..+.+|++++.+.+... ...+
T Consensus       323 ~~~~~-~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  392 (438)
T 3o7q_A          323 APHKV-LAAYALIAMALCLI--SAFAGG------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTII  392 (438)
T ss_dssp             CHHHH-HHHHHHHHHHHHHH--HHHCCH------HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTH
T ss_pred             cchHH-HHHHHHHHHHHHHH--HHHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHH
Confidence            98874 45555555554332  233322      12334457788888888888999988999877555555444 4446


Q ss_pred             HHHHHHHhhcc----hh-HHHHHHHHHHHH
Q 013318          398 SIAVVFFIGPY----IS-LQAMLIVMVVGI  422 (445)
Q Consensus       398 g~~ig~~i~~~----~~-~~~~~~i~~~~~  422 (445)
                      |..+++.+.+.    .+ +...+++.+++.
T Consensus       393 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  422 (438)
T 3o7q_A          393 GGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            66665554433    23 555555544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.93  E-value=8.1e-24  Score=215.44  Aligned_cols=389  Identities=12%  Similarity=0.001  Sum_probs=225.7

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHh-hhhhhcc-----CCCCchHHH----HHHHHHHHHhhhhHHHHHHH-hCcchhhh
Q 013318           25 NYTRDVHILSCAFLLIFLAYGAAQN-LETTVNT-----EGNLGTISL----GILYTSFTCFSLVASLVVRV-LGSKNALI   93 (445)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~~-----~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr-~G~k~~l~   93 (445)
                      +.++.++.+.+..++...++..... +.+.+.+     +.+.+....    +.......+++++.|+++|| +|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            4455666666666666555554433 2222322     256665443    44445667788999999999 89999999


Q ss_pred             hhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccch--hhhhhhHHHHHHHHhh
Q 013318           94 LGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTV--IGSFNGEFWGMFASHQ  170 (445)
Q Consensus        94 ~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~--rg~~~g~~~~~~~lg~  170 (445)
                      ++.++..+..+.. ..+++..+++.|+++|+|.+..++...++++|+.+          +++  |+++++++....++|.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~r~~~~~~~~~~~~~g~  159 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD----------EHDRRRDAGFSIFVFGINLGA  159 (491)
T ss_dssp             HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------SCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC----------cccccceeeehHHHHHHHHHH
Confidence            9998887766654 67899999999999999999999999999999984          455  8888998999999999


Q ss_pred             hhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhc-cCCcccC-cccccccchhhhhHHHHH----
Q 013318          171 FVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFL-RKEEDKG-EKETADASVNFYSYLVSL----  244 (445)
Q Consensus       171 ~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l-~~~~~~~-~~~~~~~~~~~~~~~~~~----  244 (445)
                      .+|++++..+...           .+||. .|.+.++..+++.++.++. ++..+++ +++.++.+..+..+..+.    
T Consensus       160 ~~~~~~~~~l~~~-----------~g~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  227 (491)
T 4aps_A          160 FIAPLIVGAAQEA-----------AGYHV-AFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA  227 (491)
T ss_dssp             HHHHHHHHHHHHH-----------SCHHH-HHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhh-----------hhHHH-HHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH
Confidence            9999998877543           25754 4444444444444443333 2211111 000000000000000000    


Q ss_pred             -----------------------------------------HHHHHHhhccc-h---hHHHHHHHHHHHHHHHHHHhhhc
Q 013318          245 -----------------------------------------SKSITTLLADV-R---MLLIIPLFAYSGLQQAFVWAEFT  279 (445)
Q Consensus       245 -----------------------------------------~~~~~~~l~~~-~---~~~l~~~~~~~g~~~~f~~~~~~  279 (445)
                                                               .++.....+++ +   .+.+....+............++
T Consensus       228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (491)
T 4aps_A          228 VAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLA  307 (491)
T ss_dssp             CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHH
T ss_pred             HHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence                                                     00000000111 1   11111111111111111111222


Q ss_pred             ccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchH----hHHHHHHHHHHHHHHh-h--ccCCCCccch
Q 013318          280 KEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV----SGGAIAQVVVFLWILI-N--YSVTSGVLGT  351 (445)
Q Consensus       280 ~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i----~~g~~~~~~~~~~~~~-~--~~~~~~~~~~  351 (445)
                      .+..+ .+.+....+......+++.+++.++.|++.||++||+...    ..+.++..+++.+... .  ..++.+ ...
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  386 (491)
T 4aps_A          308 TFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK-VSP  386 (491)
T ss_dssp             HHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT-CCT
T ss_pred             HHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ccH
Confidence            12111 1223345666777888888999999999999999875321    1444444444321111 0  000100 012


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHH
Q 013318          352 LYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI---SLQAMLIVMVVGICVALV  427 (445)
Q Consensus       352 ~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~---~~~~~~~i~~~~~~~~~~  427 (445)
                      ....+..++.|++.+...+..+++..+.+|++ ++.+.|+++....+|..++..+.+..   ++...+.+++++++++.+
T Consensus       387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (491)
T 4aps_A          387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGI  466 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            44566778889999888888899999999987 55678999999999999988777654   455666666666666665


Q ss_pred             HHHHHHHHH
Q 013318          428 GILFLTIQV  436 (445)
Q Consensus       428 ~~~~~~~~~  436 (445)
                      ..+...++.
T Consensus       467 ~~~~~~~~~  475 (491)
T 4aps_A          467 VLVFLSKRI  475 (491)
T ss_dssp             HHHHC----
T ss_pred             HHHHHHHHH
Confidence            555444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.93  E-value=3.2e-24  Score=218.33  Aligned_cols=348  Identities=9%  Similarity=-0.000  Sum_probs=197.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-------------------hhcchhhHHhHHHHhhhhhH
Q 013318           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-------------------LFPSWYTMVPASLYLGFAAS  126 (445)
Q Consensus        66 ~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-------------------~~~~~~~li~~r~l~Gig~g  126 (445)
                      +..+....+++++.|+++||+|||+++.++.+++.+..+.+                   .++++..+++.|+++|+|.|
T Consensus        62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G  141 (491)
T 4gc0_A           62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVG  141 (491)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            44556677899999999999999999999999888776643                   36789999999999999999


Q ss_pred             HhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHH
Q 013318          127 IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFL  206 (445)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~  206 (445)
                      ...+....|++|++          |+++||+..++.+.....|..+++.++.........   ...+..+|| ..+.+..
T Consensus       142 ~~~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~  207 (491)
T 4gc0_A          142 LASMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA---SWLNTDGWR-YMFASEC  207 (491)
T ss_dssp             HHHHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT---TTTTTTHHH-HHHHTTH
T ss_pred             HHHHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc---ccccchhhH-HHhhhhh
Confidence            99999999999998          578999999999998888888888877665443221   000112333 2333222


Q ss_pred             HHHHHHHHHHHhccCCccc----Cccccccc----ch------hhhhHHHHHHH------HHHHhhccchhHHHHHHHHH
Q 013318          207 GVITLGTILMCFLRKEEDK----GEKETADA----SV------NFYSYLVSLSK------SITTLLADVRMLLIIPLFAY  266 (445)
Q Consensus       207 ~l~~~~~~l~~~l~~~~~~----~~~~~~~~----~~------~~~~~~~~~~~------~~~~~l~~~~~~~l~~~~~~  266 (445)
                      +..++..+..+++||+++.    .++|+.++    ..      .+....++...      ......+.++........++
T Consensus       208 ~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (491)
T 4gc0_A          208 IPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIF  287 (491)
T ss_dssp             HHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHH
Confidence            2222333333556765431    11110000    00      00000000000      01112223333322222222


Q ss_pred             HHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCC
Q 013318          267 SGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT  345 (445)
Q Consensus       267 ~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~  345 (445)
                      ..+........+.+.+. ..+.............++...++.++.+++.||+|||+.. ..+.....+++..........
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~-~~~~~~~~~~~~~l~~~~~~~  366 (491)
T 4gc0_A          288 QQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGTAFYTQ  366 (491)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh-ccchHHHHHHHHHHHHHHhcc
Confidence            22211111122222221 1222223344556677888899999999999999998754 455544444332111111111


Q ss_pred             CCccchhHHHHHHHHHhhh-hhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch----------hHHH
Q 013318          346 SGVLGTLYPLIMAALLGIG-DGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI----------SLQA  413 (445)
Q Consensus       346 ~~~~~~~~~~~~~~l~G~~-~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~----------~~~~  413 (445)
                      ..   .....+...++..+ ...+.+..+.+.+|++|.+. +++.|+.+..+.++..++..+.|.+          ....
T Consensus       367 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~  443 (491)
T 4gc0_A          367 AP---GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF  443 (491)
T ss_dssp             CC---HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred             cc---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            11   12222222222222 23345677889999999885 4578888777777777665454432          2234


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013318          414 MLIVMVVGICVALVGILF  431 (445)
Q Consensus       414 ~~~i~~~~~~~~~~~~~~  431 (445)
                      .+++++++++++.+..++
T Consensus       444 ~~~i~~~~~~~~~i~~~~  461 (491)
T 4gc0_A          444 SYWIYGCMGVLAALFMWK  461 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            566777777776665433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.92  E-value=1.6e-24  Score=212.86  Aligned_cols=338  Identities=13%  Similarity=0.021  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-
Q 013318           32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-  106 (445)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-  106 (445)
                      .+.+..++............|.+.++.+.+....    +.......+++++.|++.||+|||+++.++..+..+..... 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   83 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV   83 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            3344444444444445556666666666665443    44444667788999999999999999999998887766654 


Q ss_pred             hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccc
Q 013318          107 LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKV  186 (445)
Q Consensus       107 ~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~  186 (445)
                      ..+++..+++.|+++|++.+..++...+++.|+.+          +++|++++++......+|..+|+.++..+..+   
T Consensus        84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---  150 (375)
T 2gfp_A           84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYE----------RTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---  150 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---
T ss_pred             HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---
Confidence            67899999999999999999999999999999984          67899999999999999999999998876532   


Q ss_pred             cccccCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHH
Q 013318          187 CAALLGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA  265 (445)
Q Consensus       187 ~~~~~~~~~~w~~~~~~i~~~l~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  265 (445)
                              .+||. .|.+.+++.++..+ ..+++||+++.++++  + +  ...+       ..+.+|+|+++......+
T Consensus       151 --------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~-------~~~~~~~~~~~~~~~~~~  209 (375)
T 2gfp_A          151 --------WNWRA-CYLFLLVLCAGVTFSMARWMPETRPVDAPR--T-R--LLTS-------YKTLFGNSGFNCYLLMLI  209 (375)
T ss_dssp             --------HHHHH-HHHHHHHHHHHHHCCCCCSSCCCSTTTCCC--C-C--TTTC-------STHHHHHHHHHHHHHHHH
T ss_pred             --------ccHHH-HHHHHHHHHHHHHHHHHHHCcccCCCCccc--c-c--HHHH-------HHHHhcCcchHHHHHHHH
Confidence                    24653 34444444333333 223455543222111  0 0  0111       123456777766554444


Q ss_pred             HHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHH-HHHHHHHHHhhcc
Q 013318          266 YSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIA-QVVVFLWILINYS  343 (445)
Q Consensus       266 ~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~-~~~~~~~~~~~~~  343 (445)
                      ..+..........+.++.+ .+.+..+.+......+++.++++++.|++.||.+++  . ..+..+ ...+.........
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~-~~~~~~~~~~~~~~~~~~~~  286 (375)
T 2gfp_A          210 GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--M-WQSVICCLLAGLLMWIPDWF  286 (375)
T ss_dssp             HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--H-HHHHHHHHHTSSSSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhhh
Confidence            4333332333445544432 345556788888999999999999999999998752  2 233322 1111110011111


Q ss_pred             CCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcch
Q 013318          344 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       344 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~~  409 (445)
                      +..+   .....+..++.|++.+...+..+++..+.+|++++++.|+++..+.+|..++..+.+..
T Consensus       287 ~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          287 GVMN---VWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             cccc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111   23345667788999999899999999999996666788999999888888776555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=4.5e-22  Score=198.80  Aligned_cols=372  Identities=12%  Similarity=0.067  Sum_probs=204.2

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHhhhhh-hccCCCCch----HHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHH
Q 013318           27 TRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (445)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~----~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~  101 (445)
                      +|+.+.+....++.+..+.....+.|. +.++.+++.    ...+.......+++++.|+++||+|||++++++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            345566666656655555444444433 333334433    234555567778999999999999999999988876543


Q ss_pred             HHHH----hhhcch-hhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHH
Q 013318          102 FVAA----NLFPSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (445)
Q Consensus       102 ~~~~----~~~~~~-~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li  176 (445)
                      ....    ...+.. ..++..+.+.|++.+..+++....+.++.++.        ++++++.+|.......+|..+|+.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~g~~~~~~l  157 (417)
T 2cfq_A           86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--------SRRSNFEFGRARMFGCVGWALGASI  157 (417)
T ss_dssp             CHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--------HHHHTCCHHHHSSSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--------hhhcccchHHHHHHHHHHHHHHHHH
Confidence            2111    111211 12334566777766666655555555554321        2356777777666667888888888


Q ss_pred             HHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc-ccCcccccccchhhhhHHHHHHHHHHHhhccc
Q 013318          177 TLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE-DKGEKETADASVNFYSYLVSLSKSITTLLADV  255 (445)
Q Consensus       177 ~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (445)
                      +..+...            +|+. .|++.++..++..++.++.++++ +.+++++.+++..++.+    .++..+.+|+|
T Consensus       158 ~~~l~~~------------~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  220 (417)
T 2cfq_A          158 VGIMFTI------------NNQF-VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS----LKLALELFRQP  220 (417)
T ss_dssp             HHHHHHH------------CSHH-HHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCC----HHHHHHHTTCH
T ss_pred             HHHHHHh------------chhH-HHHHHHHHHHHHHHHHHHcCccccccccccccccccccccc----HHHHHHHhcCC
Confidence            7766421            3543 33332222222222222333221 11110100000001111    12334577888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhccccc----ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHH
Q 013318          256 RMLLIIPLFAYSGLQQAFVWAEFTKEIV----TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ  331 (445)
Q Consensus       256 ~~~~l~~~~~~~g~~~~f~~~~~~~~~~----~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~  331 (445)
                      +++......+...........+++.++.    ..+.+.+..++......++.+++.++.|+++||++||+. +..+.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-l~~~~~~~  299 (417)
T 2cfq_A          221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHH
Confidence            8765543322211111111122332221    111223456777778888899999999999999998874 44555555


Q ss_pred             HHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHH-HHHHHHHHHHHHHHhhcch
Q 013318          332 VVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQ-LKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~-~~~~~~~g~~ig~~i~~~~  409 (445)
                      .+.++  ...+.++     ...+.+...+.+++.+...+..+++.+|.+|++. +++++. ++..+.+|..+++.+.+.+
T Consensus       300 ~~~~~--~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l  372 (417)
T 2cfq_A          300 SVRII--GSSFATS-----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHHH--HHTTCCS-----HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred             HHHHH--HHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence            54432  2233322     1334445555666666666667889999999774 456776 5777778877776665542


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHH
Q 013318          410 ----SLQAMLIVMVVGICVALVGILF  431 (445)
Q Consensus       410 ----~~~~~~~i~~~~~~~~~~~~~~  431 (445)
                          ++...+.+.+++.+++.+..+.
T Consensus       373 ~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          373 YESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence                4555667777776777665543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.85  E-value=7.7e-20  Score=187.61  Aligned_cols=384  Identities=10%  Similarity=0.032  Sum_probs=205.1

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhh-hhhccCCC------CchH----HHHHHHHHHHHhhhhHHHHHHHh-Ccchhhh
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLE-TTVNTEGN------LGTI----SLGILYTSFTCFSLVASLVVRVL-GSKNALI   93 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~------~g~~----~~~~~~~~~ai~~l~~g~l~dr~-G~k~~l~   93 (445)
                      .+++++.+.+..++...++....... +.+.++.+      .+..    ..+.......+++++.|++.||+ |||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34455555555555555554433322 23333333      4432    24445556677889999999999 9999999


Q ss_pred             hhhHHHHHHHHHh-hhc-chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhH---HHHHHHH
Q 013318           94 LGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGE---FWGMFAS  168 (445)
Q Consensus        94 ~g~~~~~~~~~~~-~~~-~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~---~~~~~~l  168 (445)
                      ++.++..+..+.. ..+ ++..+++.|++.|+|.+...+...++++++.          |+++|++..+.   +....++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~~~~  159 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQF----------DQSNKSLAQKAFDMFYFTINF  159 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTC----------STTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHc----------CccchHHHHHHHHHHHHHHHH
Confidence            9998877766554 566 8888999999999999999999999999997          46678766555   8888899


Q ss_pred             hhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc--cCcccc-cc---------cchh
Q 013318          169 HQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED--KGEKET-AD---------ASVN  236 (445)
Q Consensus       169 g~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~--~~~~~~-~~---------~~~~  236 (445)
                      |..+|++++..+...           .+|+. .|.+.+++.+++.++.++.+++.+  +++++. .+         ++..
T Consensus       160 g~~~g~~~~~~l~~~-----------~g~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (524)
T 2xut_A          160 GSFFASLSMPLLLKN-----------FGAAV-AFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV  227 (524)
T ss_dssp             HHHHHHHTSTHHHHT-----------SCHHH-HHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred             HHHHHHHHHHHHhcc-----------ccHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence            999999888766532           25653 455555444444443333322111  111000 00         0000


Q ss_pred             hhhHHHHHHHH-------------------------------------HH---H---------hhccc-hhHHHHHHHHH
Q 013318          237 FYSYLVSLSKS-------------------------------------IT---T---------LLADV-RMLLIIPLFAY  266 (445)
Q Consensus       237 ~~~~~~~~~~~-------------------------------------~~---~---------~l~~~-~~~~l~~~~~~  266 (445)
                      ...+.......                                     .+   +         ..+++ +.+...+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (524)
T 2xut_A          228 EGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFAL  307 (524)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTT
T ss_pred             cccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHH
Confidence            00000000000                                     00   0         01122 22222221111


Q ss_pred             HHHHHHHH---Hhhhccccccccccc---chhHHHHHHHHHHHHHHHhhhhccc----cCCCCc---cchHhHHHHHHHH
Q 013318          267 SGLQQAFV---WAEFTKEIVTPALGV---SGVGGAMAVYGAFDAICSLAAGRLT----TGLPSI---TFIVSGGAIAQVV  333 (445)
Q Consensus       267 ~g~~~~f~---~~~~~~~~~~~~~~~---~~~g~~~~~~~i~~~~g~~~~G~l~----d~~g~~---~~~i~~g~~~~~~  333 (445)
                      ........   .+.++.+.  .+.+.   ...+.+.....++.+++..+.+++.    ||.++|   ...+..+.++..+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  385 (524)
T 2xut_A          308 VTPFWSLFDQKASTWILQA--NDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGL  385 (524)
T ss_dssp             SHHHHTTTSSTTTHHHHHH--HHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHH
T ss_pred             HHHHHHHHhccchhhHHhH--HhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence            11100000   01111111  11122   1345555566667777777777764    444332   1233455555555


Q ss_pred             HHHHHHhhccCC----CCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc
Q 013318          334 VFLWILINYSVT----SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  408 (445)
Q Consensus       334 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~  408 (445)
                      +++  .+.+.+.    ..........+..+++|++.+...+..+++..+..|++ ++.+.|+++..+.+|..++..+.+.
T Consensus       386 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~  463 (524)
T 2xut_A          386 SWI--VVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVS  463 (524)
T ss_dssp             HHH--TTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443  2222210    00001234556778889999999999999999999876 5568899999888888887766543


Q ss_pred             hhH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          409 ISL---------------QAMLIVMVVGICVALVGILFLTIQ  435 (445)
Q Consensus       409 ~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~  435 (445)
                      ..-               ...+.+.+++++++.+.+++..++
T Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (524)
T 2xut_A          464 VKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARS  505 (524)
T ss_dssp             TTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             hcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            210               122556666666666665544433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.10  E-value=7e-10  Score=110.28  Aligned_cols=142  Identities=12%  Similarity=0.035  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH-h
Q 013318          262 PLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-I  340 (445)
Q Consensus       262 ~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~-~  340 (445)
                      ..++..++.........+....+-+++..++|++.+.+.++.++++++.|+++||+|||+. +..+.++..++.++.. .
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~~~  111 (438)
T 3o7q_A           33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-IITGLFLYALGAALFWPA  111 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-HHHHHHHHHHHHHHHHhc
Confidence            3344445443333233333222335566789999999999999999999999999999874 4566666555543211 0


Q ss_pred             hccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhcch
Q 013318          341 NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGPYI  409 (445)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~~~  409 (445)
                      ...++     +..+++..++.|++.+...+..++++++.+|++++ .+.+.++....+|..+++.+.+.+
T Consensus       112 ~~~~~-----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A          112 AEIMN-----YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccccc-----HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23322     35677788899999999999999999999987755 468999999999998887776543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.06  E-value=3.6e-09  Score=106.97  Aligned_cols=141  Identities=14%  Similarity=0.200  Sum_probs=105.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccC-CCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318          286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  364 (445)
Q Consensus       286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~-~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  364 (445)
                      +.+..+.+.+.+.+.++..+++++.|+++|| +|||+ ++..+.++..++.+  ...+.++     ...+++..++.|++
T Consensus        50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~l~g~~  121 (491)
T 4aps_A           50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP-AVFWGGVLIMLGHI--VLALPFG-----ASALFGSIILIIIG  121 (491)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHH--HHHSCCS-----TTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHH--HHHHhhh-----HHHHHHHHHHHHHH
Confidence            4455678999999999999999999999999 89987 45667666665543  2344433     24567778889999


Q ss_pred             hhhhhhhhhHHHHhhccCCc--h-hhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318          365 DGVLNTQLSALLGILFKHDT--E-GAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGILFLTI  434 (445)
Q Consensus       365 ~~~~~~~~~~~l~~~~~~~~--~-~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~  434 (445)
                      .+...+...++++|.+|+++  + .+++.++...++|..+++.+.+.    .++.+.+++.++..+++.+...+..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          122 TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999998654  2 36788888888888887766644    46777788877777777666655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.96  E-value=2e-09  Score=104.88  Aligned_cols=153  Identities=15%  Similarity=0.113  Sum_probs=106.9

Q ss_pred             HHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCC
Q 013318          267 SGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS  346 (445)
Q Consensus       267 ~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~  346 (445)
                      .++....+...++....+.+.+.++.+.+.+.+.++..+++++.|+++||+|||+.+ ..+.++..++.+.  ....++ 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~--~~~~~~-   87 (375)
T 2gfp_A           12 GQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLV--AVTTSS-   87 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC-HHHHHHHHHHHHH--HHHHHH-
T ss_pred             HHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHH--HHHhcc-
Confidence            333333333444433233355566789999999999999999999999999998854 5666665554432  223322 


Q ss_pred             CccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHH
Q 013318          347 GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVG  421 (445)
Q Consensus       347 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~~~i~~~~  421 (445)
                          ...+++..++.|++.+...+...+++.|.+|++ ++.+++.++....+|..+++.+.+.+    ++.+.+.+.++.
T Consensus        88 ----~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  163 (375)
T 2gfp_A           88 ----LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL  163 (375)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence                245667788899999999999999999999865 55588999998888888887776543    455566666655


Q ss_pred             HHHHHH
Q 013318          422 ICVALV  427 (445)
Q Consensus       422 ~~~~~~  427 (445)
                      .++..+
T Consensus       164 ~~~~~~  169 (375)
T 2gfp_A          164 CAGVTF  169 (375)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            555544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.96  E-value=1.2e-08  Score=101.60  Aligned_cols=171  Identities=12%  Similarity=-0.023  Sum_probs=116.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhHhhhhhhccC-CCCchHHHHHHHH----HHHHhhhhHHHHHHHh--CcchhhhhhhHHHH
Q 013318           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISLGILYT----SFTCFSLVASLVVRVL--GSKNALILGTTGYW  100 (445)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~--G~k~~l~~g~~~~~  100 (445)
                      ++++.+.+..++....+.......|.+..+ .+.+....+....    ...++.++.|++.||+  |+|+.+.++..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            455666666666665655555556665544 5666554333333    4456778899999999  99999988876654


Q ss_pred             -HHHHHh-hh--cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHH-hhhhhhH
Q 013318          101 -LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNL  175 (445)
Q Consensus       101 -~~~~~~-~~--~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~l-g~~iG~l  175 (445)
                       +..... ..  .+...++..-++.|++.+..++....++.+..          |+++||+++|++.....+ |..+|+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence             433333 23  35666667778889988888887778888876          567899999999999999 9999998


Q ss_pred             HHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318          176 ITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR  220 (445)
Q Consensus       176 i~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~  220 (445)
                      +...+....           ++ ...|.+.+++.+++.++.++++
T Consensus       402 ~~g~l~~~~-----------g~-~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          402 IVGYTVDFF-----------GW-DGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHSS-----------CS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----------Cc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            887776442           33 3345555666656655544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.89  E-value=1.6e-08  Score=103.09  Aligned_cols=137  Identities=12%  Similarity=0.018  Sum_probs=100.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccCC-CCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318          287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  365 (445)
Q Consensus       287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~-g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  365 (445)
                      ++..+.|.+.+.+.++..+++++.|+++||+ |||+. +..+.++..++.+  +..+.+. +   ...+++..++.|++.
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-~~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~~l~g~~~  123 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-ILWLSLIYCVGHA--FLAIFEH-S---VQGFYTGLFLIALGS  123 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-HHHHHHHHHHHHH--HHHHTSS-C---HHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHH--HHHHhcc-c---HHHHHHHHHHHHHhc
Confidence            5666889999999999999999999999999 99874 4566666555543  2233331 1   245667788899999


Q ss_pred             hhhhhhhhHHHHhhccCCch-h---hHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHH
Q 013318          366 GVLNTQLSALLGILFKHDTE-G---AFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGIL  430 (445)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~-~---a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~  430 (445)
                      +...+..++++++.+|++++ .   .++.++...++|..+++.+.+.    .++.+.+.+.+++.+++.+..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          124 GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987654 2   3555888888888888776653    3566677776666666555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.68  E-value=1.8e-07  Score=92.70  Aligned_cols=125  Identities=17%  Similarity=0.086  Sum_probs=87.5

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~  149 (445)
                      ...++.++.+++.||+|||+++..+..+..+..... ..++...+++..++.|++.+...+....+++|..         
T Consensus       271 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------  341 (417)
T 2cfq_A          271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF---------  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence            445678899999999999999988877665544332 4456666666777788887766666677888776         


Q ss_pred             CccchhhhhhhH-HHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 013318          150 HEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMC  217 (445)
Q Consensus       150 ~~~~~rg~~~g~-~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~  217 (445)
                       |++.||++.|+ +.....+|..+||.+.+.+..+.           ++ ...|.+.+++.+++.++.+
T Consensus       342 -p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-----------g~-~~~f~~~~~~~l~~~~~~~  397 (417)
T 2cfq_A          342 -EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----------GF-QGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             -CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----------HH-HHHHHHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----------Cc-HHHHHHHHHHHHHHHHHHH
Confidence             56789999888 46677789999998887665322           22 2345555655556555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.41  E-value=2.5e-06  Score=85.86  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=79.9

Q ss_pred             HHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH--h-hh---cchhhHHhHHHHhhhhhHH-hhhhhhhHHHHhhhh
Q 013318           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-LF---PSWYTMVPASLYLGFAASI-IWVGEGTYLTAAALS  142 (445)
Q Consensus        70 ~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~--~-~~---~~~~~li~~r~l~Gig~g~-~~~~~~~~i~~~~~~  142 (445)
                      ....++.++++++.||+|||+.++.+.....+..+.  . ..   +++..++ .-.+...+.+. ..+....|.+|..  
T Consensus       323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~f--  399 (491)
T 4gc0_A          323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL-SMLFYVAAFAMSWGPVCWVLLSEIF--  399 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTTTHHHHHHHHHSS--
T ss_pred             HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHhHHHHHHHHHHHHhC--
Confidence            345567788999999999999999888765543332  1 11   2222221 11222222111 1233456778886  


Q ss_pred             hhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccC
Q 013318          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRK  221 (445)
Q Consensus       143 ~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~  221 (445)
                              |.+.|++.+|+..+...++..+++.+...+......     ....++ ...|++++++++++.+.. +++||
T Consensus       400 --------Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-----~~~~~~-~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          400 --------PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-----VAHFHN-GFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             --------CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-----HHHHTT-CHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             --------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhhh-hHHHHHHHHHHHHHHHHHHheecC
Confidence                    567899999998888888887777554433221100     000111 224667777777766544 67887


Q ss_pred             Ccc
Q 013318          222 EED  224 (445)
Q Consensus       222 ~~~  224 (445)
                      ++.
T Consensus       466 Tkg  468 (491)
T 4gc0_A          466 TKG  468 (491)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.89
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.93

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-27  Score=237.46  Aligned_cols=369  Identities=10%  Similarity=-0.022  Sum_probs=224.9

Q ss_pred             HHHHHHhhhHhhhhhhccCCCCchH----HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h----hc
Q 013318           39 LIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L----FP  109 (445)
Q Consensus        39 ~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~----~~  109 (445)
                      +.+........+.|.+. |.+++..    ..+.....+++++++.|+++||+|||+++.++.++.++..+.. .    .+
T Consensus        36 ~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  114 (447)
T d1pw4a_          36 AYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS  114 (447)
T ss_dssp             HHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS
T ss_pred             HHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh
Confidence            33333344455566654 4455443    2455666778899999999999999999999998776655432 2    35


Q ss_pred             chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccccc
Q 013318          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAA  189 (445)
Q Consensus       110 ~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~  189 (445)
                      ++..+++.|++.|++.|..+++...+++++.          ++++|++++|+......+|..+|++++.......     
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----  179 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-----  179 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH----------HhhcccccccccccccchhhhhhhhhhhhHhhhh-----
Confidence            7888999999999999999999999999987          5789999999999999999999998876654332     


Q ss_pred             ccCCCCCcchhHHHHHHHHHHHH-HHHHHhccCCcccCc---cccccc---c-hhhh--hHHHHHHHHHHHhhccchhHH
Q 013318          190 LLGGSTSGTTLLFIVFLGVITLG-TILMCFLRKEEDKGE---KETADA---S-VNFY--SYLVSLSKSITTLLADVRMLL  259 (445)
Q Consensus       190 ~~~~~~~w~~~~~~i~~~l~~~~-~~l~~~l~~~~~~~~---~~~~~~---~-~~~~--~~~~~~~~~~~~~l~~~~~~~  259 (445)
                           .+||.. +.+..++..+. ++...+++++++...   .++.+.   + ..++  .+.........+.+++|.++.
T Consensus       180 -----~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
T d1pw4a_         180 -----NDWHAA-LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWY  253 (447)
T ss_dssp             -----CCSTTC-THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHH
T ss_pred             -----hccccc-chhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHH
Confidence                 246543 44444444433 333345555432211   000000   0 0000  000000112334667777766


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH
Q 013318          260 IIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI  338 (445)
Q Consensus       260 l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~  338 (445)
                      .....++..........+.+.++.+ .+.+..+.+.......++.++++++.|++.||.++++.................
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (447)
T d1pw4a_         254 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  333 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHH
Confidence            5544443333222222334433322 345556788888899999999999999999999876533212111111121111


Q ss_pred             HhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHH-HHHHHHhhc----chhHH
Q 013318          339 LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCAS-IAVVFFIGP----YISLQ  412 (445)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g-~~ig~~i~~----~~~~~  412 (445)
                      .....+..+   .....++.++.|++.+...+..+++..+.+|++. +.+.|+.+....++ ..+++.+.+    ..++.
T Consensus       334 ~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~  410 (447)
T d1pw4a_         334 VYWMNPAGN---PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  410 (447)
T ss_dssp             HTTSCCTTC---HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            122222222   2455666777888888888888899999999875 45788887776664 444544443    33556


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013318          413 AMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       413 ~~~~i~~~~~~~~~~~~~~~  432 (445)
                      ..++++.++.+++.++...+
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         411 GGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666666655555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.2e-22  Score=191.35  Aligned_cols=375  Identities=12%  Similarity=0.077  Sum_probs=213.8

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHhhhhh-hccCCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318           26 YTRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (445)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~  100 (445)
                      ++||++++.+.+++.+..+....++.|. +.++.+++....+.+..    ...+++++.|+++||+||||+++++..+..
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            4688899988888887777665555554 44456777665544443    556788899999999999999999887766


Q ss_pred             HHHHHh-hhc----chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhH
Q 013318          101 LFVAAN-LFP----SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL  175 (445)
Q Consensus       101 ~~~~~~-~~~----~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~l  175 (445)
                      +..... ..+    .....+..+.+.|.+.+...........+..++        +++++.+..+........+..+|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--------HHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc--------hhhhhHHHHHHHhhhhccccccccc
Confidence            544432 222    223334456666666655554444333333321        1335566677777777888888888


Q ss_pred             HHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccc
Q 013318          176 ITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADV  255 (445)
Q Consensus       176 i~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (445)
                      ++..+...            +|+...+...........+..++.+++++.++++.++++..+.....    ...+..+++
T Consensus       157 ~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  220 (417)
T d1pv7a_         157 IVGIMFTI------------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK----LALELFRQP  220 (417)
T ss_dssp             HHHHHHHH------------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHH----HHHHHTTSS
T ss_pred             cccccccc------------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccccccc----ccccccccc
Confidence            87766532            23332233222222223333334444332221111111000001111    112233444


Q ss_pred             hhHHHHHHHHHHHHHH-HH--HHhhhcccc-cccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHH
Q 013318          256 RMLLIIPLFAYSGLQQ-AF--VWAEFTKEI-VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ  331 (445)
Q Consensus       256 ~~~~l~~~~~~~g~~~-~f--~~~~~~~~~-~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~  331 (445)
                      +.+............. .+  ....+.... .+.+.+....+.......++..++..+.+++.||.++|+. +..+.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-~~~~~~~~  299 (417)
T d1pv7a_         221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH-HHHHHHHH
T ss_pred             cccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc-hhhhHHHH
Confidence            4333222222111111 11  111121111 1122233456667778888999999999999999998874 45555555


Q ss_pred             HHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHH-HHHHHHHHHHHHHHhhcc-
Q 013318          332 VVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQ-LKVWQCASIAVVFFIGPY-  408 (445)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~-~~~~~~~g~~ig~~i~~~-  408 (445)
                      .++.+  ...+.++     ....++..++.|++.+...+..++++.+.+|++. ++++|. ++....+|..+++.+.+. 
T Consensus       300 ~~~~~--~~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l  372 (417)
T d1pv7a_         300 SVRII--GSSFATS-----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHHH--HHHTCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHhhh--ccccccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54433  2334433     2456677788899999999999999999998774 457775 455666776666555433 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHH
Q 013318          409 ---ISLQAMLIVMVVGICVALVGILFL  432 (445)
Q Consensus       409 ---~~~~~~~~i~~~~~~~~~~~~~~~  432 (445)
                         .++...+.+.+++.++..+...+.
T Consensus       373 ~~~~g~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         373 YESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHh
Confidence               456677777777666666655554

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.7e-09  Score=104.81  Aligned_cols=142  Identities=11%  Similarity=0.087  Sum_probs=98.7

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccC--CCCccchhHHHHHHH
Q 013318          282 IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV--TSGVLGTLYPLIMAA  359 (445)
Q Consensus       282 ~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  359 (445)
                      +.+.+++.+++|++.+.+.++..+++++.|+++||+|||+ ++..+.++..++.++  ....+  ...   ....++..+
T Consensus        51 ~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~  124 (447)
T d1pw4a_          51 LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLF--MGFVPWATSS---IAVMFVLLF  124 (447)
T ss_dssp             TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHH--HHHCHHHHSS---SSHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-HHHHHHHHHHHHHhh--ccccchhhhh---HHHHHHHHH
Confidence            3455677789999999999999999999999999999987 455666665554332  12211  011   245677788


Q ss_pred             HHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHHHH
Q 013318          360 LLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPY-----ISLQAMLIVMVVGICVALVGI  429 (445)
Q Consensus       360 l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~-----~~~~~~~~i~~~~~~~~~~~~  429 (445)
                      +.|++.+...+...+++++.+|+++ +.++++.+....+|..++..+...     .+..+.+++...+.++..+..
T Consensus       125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  200 (447)
T d1pw4a_         125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA  200 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHH
Confidence            8999999988999999999998774 457898888888887666544322     233444555554444444333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=4.5e-09  Score=99.72  Aligned_cols=131  Identities=16%  Similarity=0.070  Sum_probs=97.9

Q ss_pred             HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (445)
Q Consensus        71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~  149 (445)
                      ...++..+.+++.||.|+|+.+.++..+..+..... ..++...+++..++.|++.+..++...+++.+..         
T Consensus       271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---------  341 (417)
T d1pv7a_         271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF---------  341 (417)
T ss_dssp             HHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred             ccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence            445577789999999999999999988776655543 5678888888889999999999999999998887         


Q ss_pred             CccchhhhhhhHHH-HHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCc
Q 013318          150 HEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEE  223 (445)
Q Consensus       150 ~~~~~rg~~~g~~~-~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~  223 (445)
                       |+++||+..|+.. ....+|..+|+++.+.+..+.           |++ ..|.+.+++.++..++. +++++++
T Consensus       342 -~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-----------g~~-~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         342 -EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----------GFQ-GAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             -CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-----------CHH-HHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             -CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------CHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence             5778999999754 455688899998887765432           333 34556666665555544 4455443