Citrus Sinensis ID: 013321

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Secondary Structure (PSIPRED)
cEEEEcccccccccccccccccccEEEEcccccEEEEEccccEEEEEEccccccccEEEEEEccccccccccccccccccccccEEEEcccccEEEEEccccEEEEEEccccEEEEEEcccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEEcccccEEEccccccccccEEEEEEccEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccEEEccccEEcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccEEEEEEEccccccccccEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEEccccccccccccccccEcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccccccccccHHHHHccccccEEEEcccccEEEEEccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHccccHHHHHHHHccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mikfeggyTVETVfegskfgmepfsvavspsgellvldsensniykistslspysrpklvagspegyyghvdgrprgarmnhpkglavddrgniyiADTMNMAIRKISdtgvttiaggkwsrgvghvdgpsedakfsndfDVVYVGSSCSLLVIDRGNQAIREIQlhdddcsdnyddtfHLGIFVLVAAAFFGYMLALLQRRVQAMfsskddprtqmkrgppavapyqrppksarpplvpteddfekpeegffgsigrlvlntgstvgeiFGGLFsmfrrkpvhyqrqhqyqqrnvppstwhmqesyvipdedepppletrtptpkksyhpytikdldkrqytkqsksyyngwevdyhhgqqqqmpihhqqqqhhhrqfsphpqtyyekscetnEIVFGAvqeqdgrrEAVVIKAvdygdprynhhnirprlnymgysnsysqvy
Flexible Loop (DISEMBL)
MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKistslspysrpkLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFsskddprtqmkrgppavapyqrppksarppLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHqyqqrnvppstWHMQESyvipdedepppletrtptpkksyhpytikdldkrqyTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGavqeqdgrrEAVVIkavdygdprynhhnirprlnymgysnsysqvy
Low Complexity Region (SEG)
MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVhyqrqhqyqqrNVPPSTWHMQESYVIpdedepppletrtptpKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYhhgqqqqmpihhqqqqhhhrqfsphpqTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Disordered region (IsUnstruct)
*****GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKIS******************YYG***************GLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQA*********************************************GFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQR***********************************************************KSYYNGWEVDYH***************************YYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGY********
Disordered Region (DISOPRED)
MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDP***************************************FGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQH***********WH***SY***********************************************************************************************************AVDYGDPRYNHHNIRPRLNYMGYS**Y****
Disordered Region (DISEMBL)
MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMF*****************APYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPV***********NVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHG************************TYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Disordered Region (DISPRO)
MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK***************PYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYH******MPIHHQQ*QHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
Q9WTS6	2715	Teneurin-3 OS=Mus musculu	yes	no	0.215	0.035	0.300	0.0005

>sp|Q9WTS6|TEN3_MOUSE Teneurin-3 OS=Mus musculus GN=Tenm3 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 17/113 (15%)

Query: 6    GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE 65
            G + V+T  E +       ++AVS SG L + +++   I +I   ++      LVAG P 
Sbjct: 1410 GKHAVQTTLESAT------AIAVSYSGVLYITETDEKKINRIR-QVTTDGEISLVAGIPS 1462

Query: 66   ----------GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS 108
                        Y   DG  + A++N P  LA    G +YIAD  N+ IR +S
Sbjct: 1463 ECDCKNDANCDCYQSGDGYAKDAKLNAPSSLAASPDGTLYIADLGNIRIRAVS 1515

May function as a cellular signal transducer.
Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
255552640	494	conserved hypothetical protein [Ricinus	0.964	0.868	0.741	1e-176
449492692	516	PREDICTED: uncharacterized protein LOC10	0.986	0.850	0.671	1e-168
449449204	454	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.988	0.969	0.685	1e-167
296087695	811	unnamed protein product [Vitis vinifera]	0.984	0.540	0.721	1e-166
224140207	453	predicted protein [Populus trichocarpa]	0.973	0.955	0.687	1e-166
225452518	677	PREDICTED: uncharacterized protein LOC10	0.966	0.635	0.718	1e-163
255560011	500	conserved hypothetical protein [Ricinus	0.964	0.858	0.658	1e-157
147860395	527	hypothetical protein VITISV_043282 [Viti	0.984	0.831	0.650	1e-156
356573394	528	PREDICTED: uncharacterized protein LOC10	0.975	0.821	0.646	1e-156
356497860	508	PREDICTED: uncharacterized protein LOC10	0.984	0.862	0.625	1e-149

>gi|255552640|ref|XP_002517363.1| conserved hypothetical protein [Ricinus communis] gi|223543374|gb|EEF44905.1| conserved hypothetical protein [Ricinus communis]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 330/445 (74%), Positives = 368/445 (82%), Gaps = 16/445 (3%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           M+KFEGGYTVETVF+GSK G+EP +V VSPSGELLVLDSENSNIYKIST LS YSRPKL+
Sbjct: 62  MMKFEGGYTVETVFDGSKLGIEPHTVDVSPSGELLVLDSENSNIYKISTPLSRYSRPKLI 121

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
           AGSPEGY GHVDGR R ARMNHPKGL VD+RGNIYIADTMNMAIRKISD GVTTIAGGKW
Sbjct: 122 AGSPEGYSGHVDGRLREARMNHPKGLTVDNRGNIYIADTMNMAIRKISDGGVTTIAGGKW 181

Query: 121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH 180
           +R  GHVDGPSEDAKFSNDFD+ Y+GSSCSLLVIDRGNQAIREIQL+DDDC++ YD TFH
Sbjct: 182 TRAGGHVDGPSEDAKFSNDFDIAYIGSSCSLLVIDRGNQAIREIQLNDDDCNNQYDGTFH 241

Query: 181 LGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVP 240
           LGI VLVAAAFFGYMLALLQ RVQ +FS ++DPRT MK G P +APYQRPPK  RPPLVP
Sbjct: 242 LGIAVLVAAAFFGYMLALLQWRVQTLFSPRNDPRTYMKNGTP-MAPYQRPPKPVRPPLVP 300

Query: 241 TEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPST 300
           ++D+ +KP+EGFFGS+G+LVL          GGLFS FRRKP+HYQ Q QYQQ+    + 
Sbjct: 301 SDDEPDKPDEGFFGSLGKLVL----------GGLFSGFRRKPLHYQFQQQYQQQLKHSNP 350

Query: 301 WHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDY--- 357
           W MQES+VIPDEDEPP LETRTPT KK+Y P     ++K    KQS  YYNGW+ DY   
Sbjct: 351 WPMQESFVIPDEDEPPSLETRTPTSKKAY-PSMTNGVEKHYQFKQSSGYYNGWDGDYHQQ 409

Query: 358 -HHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAV 416
                Q QM  H +QQQHHHR ++ +P+TYYEKSCETNEIVFGAVQEQDGRREAVVIKAV
Sbjct: 410 QQMQMQVQMQQHQKQQQHHHRHYTSNPKTYYEKSCETNEIVFGAVQEQDGRREAVVIKAV 469

Query: 417 DYGDPRYNHHNIRPRLNYMGYSNSY 441
           DY DPRYNHHNIRPR NY+GYS+ Y
Sbjct: 470 DYADPRYNHHNIRPRFNYVGYSHGY 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492692|ref|XP_004159073.1| PREDICTED: uncharacterized protein LOC101226879 [Cucumis sativus]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 307/457 (67%), Positives = 368/457 (80%), Gaps = 18/457 (3%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           M+KFE GY+VETVF+GSK G++P+SV +SPSGELL+LD+ENSNI+KIS  LS +SRPKLV
Sbjct: 62  MMKFESGYSVETVFDGSKLGIDPYSVEMSPSGELLILDAENSNIHKISMPLSRFSRPKLV 121

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
           +GS EGY GHVDG  R ARMNHPKGL +D+RGNIYIADTMNMAIRKISDTGVTTIAGG+W
Sbjct: 122 SGSAEGYSGHVDGHSREARMNHPKGLTLDERGNIYIADTMNMAIRKISDTGVTTIAGGRW 181

Query: 121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH 180
           ++G GH+DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN+AIREI+L+ DDC+  Y D+ +
Sbjct: 182 NQGSGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIELNYDDCNTQYADSLN 241

Query: 181 LGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRT---QMKRGPPAVAPYQRPP-KSARP 236
           LG+ +LVAA  FGY+LALLQRRVQAMFSS+ D      QM +  P VAPYQRPP KS RP
Sbjct: 242 LGVVLLVAAGLFGYLLALLQRRVQAMFSSQKDQEIRSQQMMKATP-VAPYQRPPLKSVRP 300

Query: 237 PLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNV 296
            L+P+ED+ EK EEGFFGS+GRL +N+GS++ +IFGGL S FRRKP+++Q   Q+Q  N 
Sbjct: 301 SLIPSEDEPEKLEEGFFGSLGRLFVNSGSSMADIFGGLLSGFRRKPLNHQIHQQFQPVNR 360

Query: 297 PPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVD 356
            P+ W +QES+VIPDEDEPP +ET+TPT KK+Y P+  +DLD+    K ++SY++GW+ +
Sbjct: 361 HPNAWPLQESFVIPDEDEPPSIETKTPTIKKTY-PFMTQDLDRSHQFKPNRSYFSGWDGE 419

Query: 357 Y------------HHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQ 404
           +            H  Q  Q   H QQQQ+HHRQ+S  P TYYEKSCETNEIVFGAVQEQ
Sbjct: 420 FHQQQQQQQIQHHHQQQHIQHHHHQQQQQYHHRQYSAGPTTYYEKSCETNEIVFGAVQEQ 479

Query: 405 DGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 441
           DGRREA+VIKAVDYGDPRYNHHNIR R NY G  NSY
Sbjct: 480 DGRREAMVIKAVDYGDPRYNHHNIRARYNYTGNPNSY 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449204|ref|XP_004142355.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209861 [Cucumis sativus]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 303/442 (68%), Positives = 360/442 (81%), Gaps = 2/442 (0%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           M+KFE GY+VETVF+GSK G++P+SV +SPSGELL+LD+ENSNI+KIS  LS +SRPKLV
Sbjct: 14  MMKFESGYSVETVFDGSKLGIDPYSVEMSPSGELLILDAENSNIHKISMPLSRFSRPKLV 73

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
           +GS EGY GHVDG  R ARMNHPKGL +D+RGNIYIADTMNMAIRKISDTGVTTIAGG+W
Sbjct: 74  SGSAEGYSGHVDGHSREARMNHPKGLTLDERGNIYIADTMNMAIRKISDTGVTTIAGGRW 133

Query: 121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH 180
           ++G GH+DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN+AIREI+L+ DDC+  Y D+ +
Sbjct: 134 NQGSGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIELNYDDCNTQYADSLN 193

Query: 181 LGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPP-KSARPPLV 239
           LG+ +LVAA  FGY+LALLQRRVQAMFSS+ + R+Q       VAPYQRPP KS RP L+
Sbjct: 194 LGVVLLVAAGLFGYLLALLQRRVQAMFSSQKEIRSQQMMKATPVAPYQRPPLKSVRPSLI 253

Query: 240 PTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPS 299
           P+ED+ EK EEGFFGS+GRL +N+GS++ +IFGGL S FRRKP+++Q   Q+Q  N  P+
Sbjct: 254 PSEDEPEKLEEGFFGSLGRLFVNSGSSMADIFGGLLSGFRRKPLNHQIHQQFQPVNRHPN 313

Query: 300 TWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHH 359
            W +QES+VIPDEDEPP +ET+TPT KK+Y P+  +DLD+    K + S  N     +H 
Sbjct: 314 AWPLQESFVIPDEDEPPSIETKTPTIKKTY-PFMTQDLDRSHQFKPNNSNNNSXIQHHHQ 372

Query: 360 GQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYG 419
            Q  Q   H QQQQ+HHRQ+S  P TYYEKSCETNEIVFGAVQEQDGRREA+VIKAVDYG
Sbjct: 373 QQHIQHHHHQQQQQYHHRQYSAGPTTYYEKSCETNEIVFGAVQEQDGRREAMVIKAVDYG 432

Query: 420 DPRYNHHNIRPRLNYMGYSNSY 441
           DPRYNHHNIR R NY G  NSY
Sbjct: 433 DPRYNHHNIRARYNYTGNPNSY 454

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087695|emb|CBI34951.3| unnamed protein product [Vitis vinifera]

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 321/445 (72%), Positives = 369/445 (82%), Gaps = 7/445 (1%)

Query: 2   IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA 61
           + FE GYTVETVF+GSK G+EP+S+ VS SGELLVLDSENSNIYKIS+ LS YSRPKLVA
Sbjct: 63  MNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKLVA 122

Query: 62  GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWS 121
           GSP+GY GHVDG+ R ARMNHPKGL +D+RGNIYIADTMNMAIRKISD GVTTIAGGKW 
Sbjct: 123 GSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGKWG 182

Query: 122 RGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHL 181
           RG GHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGNQAIREIQLH +DC+  Y+ +FHL
Sbjct: 183 RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSFHL 242

Query: 182 GIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPT 241
           GI VLVAA FFGYMLALLQRRV AMFSS+ D  T MK+G P  + YQRP KS R PL+PT
Sbjct: 243 GIAVLVAAGFFGYMLALLQRRVAAMFSSQYDSSTPMKKGMPPES-YQRPLKSVRAPLIPT 301

Query: 242 EDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTW 301
           ED++EK +EGFFGS+GRL LNTGST+ EIFGGLFS  R+KP H Q Q QY Q NV  + W
Sbjct: 302 EDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNVHSNGW 361

Query: 302 HMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYY-NGWEVDYHHG 360
            MQESYVIPDEDEPP +E+R PTPKK+Y P+   +++K  + +QS+++Y NGW+ +Y   
Sbjct: 362 PMQESYVIPDEDEPPSIESRAPTPKKTY-PFMTPEMEKTHHFRQSRTFYSNGWDGNYQQL 420

Query: 361 QQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCET-NEIVFGAVQEQDGRREAVVIKAVDYG 419
           QQ+Q+    Q QQHH + +S +PQTYYE+SCET NEIVFGAVQEQDGRREA+VIKAVDYG
Sbjct: 421 QQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKAVDYG 480

Query: 420 DPRYNHHNIRPRLNYMGYSNSYSQV 444
           DP YNHHNIRPRLNYM    SYS +
Sbjct: 481 DPVYNHHNIRPRLNYMA---SYSHI 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140207|ref|XP_002323476.1| predicted protein [Populus trichocarpa] gi|222868106|gb|EEF05237.1| predicted protein [Populus trichocarpa]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 312/454 (68%), Positives = 360/454 (79%), Gaps = 21/454 (4%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           M+KFEGGYTVETVF+GSK G+EP+SV VSPSGELL+LDSENSNIYKIST  S Y RPKL+
Sbjct: 8   MMKFEGGYTVETVFDGSKLGIEPYSVEVSPSGELLLLDSENSNIYKISTQFSKYGRPKLI 67

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGK 119
            GS EGY GHVDG+ R ARMNHPKGL VD+ GNIY+ADTMNMAIRKIS D GVTTIAGGK
Sbjct: 68  TGSFEGYPGHVDGKLRDARMNHPKGLTVDEGGNIYVADTMNMAIRKISTDGGVTTIAGGK 127

Query: 120 WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF 179
           W+RG GHVDGPSEDAKFSNDFDVVY  SSCSLL+IDRG+QAIREIQLHDDDC+  +DD F
Sbjct: 128 WARGGGHVDGPSEDAKFSNDFDVVYSASSCSLLIIDRGSQAIREIQLHDDDCNYPHDDCF 187

Query: 180 HL----------GIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQR 229
           HL          G+ VLVAA FFGYMLALLQRRVQ +FSS         +GPP  APYQ 
Sbjct: 188 HLDLDNILINIAGLAVLVAAGFFGYMLALLQRRVQILFSST------RGKGPPK-APYQS 240

Query: 230 PPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQH 289
           PP S RPP +P ED+  K +EG FGS+GRL+LNT STVGEIFGG+FS FRRKP+HYQ Q 
Sbjct: 241 PPMSVRPPFIPDEDEPVKSDEGLFGSLGRLILNTSSTVGEIFGGIFSGFRRKPIHYQFQQ 300

Query: 290 QYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSY 349
            YQQ     +TW +Q+S+VIPDEDEPP +ETR+PT +K+Y P+  KD+++  + +Q++ Y
Sbjct: 301 HYQQPLKHSNTWPVQDSFVIPDEDEPPSIETRSPTSQKTY-PFMTKDVEQNHHLEQNQGY 359

Query: 350 YNGWEVDYHHGQQQQMPIHHQQQQHHHRQFS--PHPQTYYEKSCETNEIVFGAVQEQDGR 407
           Y+ W   YH  QQQQM +   +QQ         P+P+TYYEKSCETNEIVFGAVQEQ+GR
Sbjct: 360 YSNWGGGYHQQQQQQMHLQRYKQQQQQHHRHYMPNPKTYYEKSCETNEIVFGAVQEQNGR 419

Query: 408 REAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 441
           REAVVIKAVDYGDPRYNHHNIRPR NY+GYS+SY
Sbjct: 420 REAVVIKAVDYGDPRYNHHNIRPRFNYVGYSDSY 453

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452518|ref|XP_002274991.1| PREDICTED: uncharacterized protein LOC100266244 [Vitis vinifera]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 317/441 (71%), Positives = 363/441 (82%), Gaps = 11/441 (2%)

Query: 2   IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA 61
           + FE GYTVETVF+GSK G+EP+S+ VS SGELLVLDSENSNIYKIS+ LS YSRPKLVA
Sbjct: 63  MNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKLVA 122

Query: 62  GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWS 121
           GSP+GY GHVDG+ R ARMNHPKGL +D+RGNIYIADTMNMAIRKISD GVTTIAGGKW 
Sbjct: 123 GSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGKWG 182

Query: 122 RGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHL 181
           RG GHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGNQAIREIQLH +DC+  Y+ +FHL
Sbjct: 183 RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSFHL 242

Query: 182 GIFVLVAAAFFGYMLALLQRRVQAMFSSK--DDPRTQMKRGPPAVAPYQRPPKSARPPLV 239
           GI VLVAA FFGYMLALLQRRV AMFSS+   DP          +  YQRP KS R PL+
Sbjct: 243 GIAVLVAAGFFGYMLALLQRRVAAMFSSQYVSDPAFF------TLQSYQRPLKSVRAPLI 296

Query: 240 PTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPS 299
           PTED++EK +EGFFGS+GRL LNTGST+ EIFGGLFS  R+KP H Q Q QY Q NV  +
Sbjct: 297 PTEDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNVHSN 356

Query: 300 TWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYY-NGWEVDYH 358
            W MQESYVIPDEDEPP +E+R PTPKK+Y P+   +++K  + +QS+++Y NGW+ +Y 
Sbjct: 357 GWPMQESYVIPDEDEPPSIESRAPTPKKTY-PFMTPEMEKTHHFRQSRTFYSNGWDGNYQ 415

Query: 359 HGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCET-NEIVFGAVQEQDGRREAVVIKAVD 417
             QQ+Q+    Q QQHH + +S +PQTYYE+SCET NEIVFGAVQEQDGRREA+VIKAVD
Sbjct: 416 QLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKAVD 475

Query: 418 YGDPRYNHHNIRPRLNYMGYS 438
           YGDP YNHHNIRPRLNYMGYS
Sbjct: 476 YGDPVYNHHNIRPRLNYMGYS 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560011|ref|XP_002521024.1| conserved hypothetical protein [Ricinus communis] gi|223539861|gb|EEF41441.1| conserved hypothetical protein [Ricinus communis]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/442 (65%), Positives = 344/442 (77%), Gaps = 13/442 (2%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           M+KFEGGY VETVF+GSK G+EP+SV V P+GELL+LDS NSNIY+IS+SLS YSRPKLV
Sbjct: 71  MMKFEGGYNVETVFDGSKLGIEPYSVEVLPNGELLILDSANSNIYRISSSLSLYSRPKLV 130

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
           AGSP+GY GHVDG+ R ARMNHPKGL VDDRGNIYIAD MNMAIRKISD GVTTIAGGKW
Sbjct: 131 AGSPDGYSGHVDGKHREARMNHPKGLTVDDRGNIYIADAMNMAIRKISDAGVTTIAGGKW 190

Query: 121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH 180
            RG  HVDG SEDAKFSNDFDVVY+GSSCSLLVIDRGN+AIREIQLH DDC+  Y+  F 
Sbjct: 191 GRGGSHVDGASEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYESGFP 250

Query: 181 LGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVP 240
           LG+ VLVAA FFGYMLALLQRRV  + SS++D R  MK      +PYQ+P +S RPPL+P
Sbjct: 251 LGVAVLVAAGFFGYMLALLQRRVGKIVSSQND-RDAMKTSISG-SPYQKPLRSVRPPLIP 308

Query: 241 TEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPST 300
           TED+ EK EEGFFGS+G+L  N G+ V EI GG+   FR+KP++YQ   Q Q+ +   ST
Sbjct: 309 TEDEQEKHEEGFFGSLGKLFANAGACVVEILGGIVPGFRKKPLNYQYLSQQQKHS---ST 365

Query: 301 WHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHG 360
           W +Q+S+VIPDEDEPP +ETRTPTPKK+Y P+  KD +K    +Q +++Y+GW+ D+   
Sbjct: 366 WPVQDSFVIPDEDEPPSIETRTPTPKKTY-PFMSKDAEKMHQWRQGRAFYSGWDDDFQQQ 424

Query: 361 QQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCE-TNEIVFGAVQEQDGRREAVVIKAVDYG 419
           QQQQ   HH + Q      S  P TYYE+S E TNEIVFGAVQEQDG+REA V+K VDYG
Sbjct: 425 QQQQKHQHHHRYQ------SAIPHTYYEQSYEKTNEIVFGAVQEQDGKREAAVVKPVDYG 478

Query: 420 DPRYNHHNIRPRLNYMGYSNSY 441
           D  YN  +IR R + MGYSN +
Sbjct: 479 DSVYNQQSIRFRTSSMGYSNGF 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860395|emb|CAN80443.1| hypothetical protein VITISV_043282 [Vitis vinifera]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 315/484 (65%), Positives = 366/484 (75%), Gaps = 46/484 (9%)

Query: 2   IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA 61
           + FE GYTVETVF+GSK G+EP+S+ VS SGELLVLDSENSNIYKIS+ LS YSRPKLVA
Sbjct: 46  MNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKLVA 105

Query: 62  GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWS 121
           GSP+GY GHVDG+ R ARMNHPKGL +D+RGNIYIADTMNMAIRKISD GVTTIAGGKW 
Sbjct: 106 GSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGKWG 165

Query: 122 RGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHL 181
           RG GHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGNQAIREIQLH +DC+  Y+ +FHL
Sbjct: 166 RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSFHL 225

Query: 182 ------------------------------GIFVLVAAAFFGYMLA-------LLQRRVQ 204
                                         GI VLVAA FFGYMLA       LL    Q
Sbjct: 226 GKLRLANFVIAITXPWLWRFMRRFSLIAVAGIAVLVAAGFFGYMLAYAACTLFLLMETCQ 285

Query: 205 AMFSS-----KDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRL 259
           + F++       D  T MK+G P  + YQRP KS R PL+PTED++EK +EGFFGS+GRL
Sbjct: 286 SSFANSFHDKSSDSSTPMKKGMPPES-YQRPLKSVRAPLIPTEDEYEKADEGFFGSLGRL 344

Query: 260 VLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLE 319
            LNTGST+ EIFGGLFS  R+KP H Q Q QY Q NV  + W MQESYVIPDEDEPP +E
Sbjct: 345 FLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNVHSNGWPMQESYVIPDEDEPPSIE 404

Query: 320 TRTPTPKKSYHPYTIKDLDKRQYTKQSKSYY-NGWEVDYHHGQQQQMPIHHQQQQHHHRQ 378
           +R PTPKK+Y P+   +++K  + +QS+++Y NGW+ +Y   QQ+Q+    Q QQHH + 
Sbjct: 405 SRAPTPKKTY-PFMTPEMEKXHHFRQSRTFYSNGWDGNYQQLQQKQIQQKQQYQQHHQKH 463

Query: 379 FSPHPQTYYEKSCET-NEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGY 437
           +S +PQTYYE+SCET NEIVFGAVQEQDGRREA+VIKAVDYGDP YNHHNIRPRLNYMGY
Sbjct: 464 YSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKAVDYGDPVYNHHNIRPRLNYMGY 523

Query: 438 SNSY 441
           S++Y
Sbjct: 524 SHAY 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573394|ref|XP_003554846.1| PREDICTED: uncharacterized protein LOC100793916 [Glycine max]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 303/469 (64%), Positives = 350/469 (74%), Gaps = 35/469 (7%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           M+KFE GY+VET+F+GS+ G+EP SV +SP+GE LVLDSENSNIYK+S S+S YSRPKL+
Sbjct: 67  MVKFESGYSVETIFDGSQLGIEPHSVKISPNGEFLVLDSENSNIYKVSGSMSRYSRPKLL 126

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
           AGS EG  GH+DGRPR ARMNHPKGL VDDRGNIYIADT+NMAIRKISD GVTTIAGGK 
Sbjct: 127 AGSAEGNIGHIDGRPREARMNHPKGLTVDDRGNIYIADTLNMAIRKISDEGVTTIAGGKR 186

Query: 121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS--DNYDDT 178
               GHVDGPSEDAKFSNDFDVVYVGSSCSLLV+DRGN AIREIQLH DDC+  D  D++
Sbjct: 187 GYAGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVVDRGNHAIREIQLHQDDCTSYDEDDNS 246

Query: 179 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPP---KSAR 235
           F+LGI VLVAAAFFGYMLALLQ RV+AMFSS D       R P      QRPP   KS R
Sbjct: 247 FNLGIVVLVAAAFFGYMLALLQWRVRAMFSSPD------VRAPFVAQQMQRPPPTTKSVR 300

Query: 236 PPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQR- 294
           PPL+P ED+FEK +EGFF S+GRL LN+G+ + EI GGLFS  +RK + Y +  Q  Q  
Sbjct: 301 PPLIPNEDEFEKQDEGFFVSLGRLFLNSGTCMSEILGGLFSGSKRKSLQYHQYQQQYQYA 360

Query: 295 NVPPSTWHMQESYVIPDEDEPPP-LETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGW 353
           N  P+ W MQES+VIPDEDEPPP LET+TPTP+++Y P   K+L+K Q+ K S+ Y   W
Sbjct: 361 NRYPNAWPMQESFVIPDEDEPPPSLETKTPTPRETY-PIMTKELEKPQHFKPSRGYLKRW 419

Query: 354 E-VDYHHGQQQQMPIHHQQQQHH--------------------HRQFSPHPQTYYEKSCE 392
           E  DY    QQ    H Q QQ H                    H ++S  PQ YYE++CE
Sbjct: 420 EGGDYQEQHQQLQQHHQQHQQEHPKLQHQQHQQQVKLQHQHQVHTRYSSTPQGYYEQNCE 479

Query: 393 TNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 441
           TNEIVFGAVQE DGRREA+VIKAVDYGDP+Y HHNIRPRLNY+GYS+ Y
Sbjct: 480 TNEIVFGAVQEHDGRREAMVIKAVDYGDPKYTHHNIRPRLNYVGYSHGY 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497860|ref|XP_003517774.1| PREDICTED: uncharacterized protein LOC100799483 [Glycine max]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/449 (62%), Positives = 340/449 (75%), Gaps = 11/449 (2%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           M+KFE GYTVETVF+GSK G+EP++V V P+GELL+LDS NSNIY+IS+SLS  SRPKLV
Sbjct: 63  MMKFESGYTVETVFDGSKLGIEPYAVEVLPNGELLILDSANSNIYRISSSLSLNSRPKLV 122

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
           AGS EGY GHVDGR R ARMNHPKG+ VD+RGNIY+AD MNMAIRKISD+GVTTIAGGKW
Sbjct: 123 AGSAEGYSGHVDGRFREARMNHPKGITVDNRGNIYVADIMNMAIRKISDSGVTTIAGGKW 182

Query: 121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH 180
           SRG GHVDGPSE+AKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH DDC+  Y++ F 
Sbjct: 183 SRGGGHVDGPSEEAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGFP 242

Query: 181 LGIFVLVAAAFFGYMLALLQRRVQAMFSSKD-DPRTQMKRGPPAVAPYQRPPKSARPPLV 239
           LGI VL+ A FFGYMLALLQRR+  + +S+D    + M    P  +PYQ+P  SARPPL+
Sbjct: 243 LGIAVLIGAGFFGYMLALLQRRLGTIVASQDVSAHSSMSGISP--SPYQKPLNSARPPLI 300

Query: 240 PTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKP---VHYQRQHQYQQRNV 296
           P+ED+ +K EE FFGSIG+L+ N G++V EI G LF  FR+ P     +Q    +QQ   
Sbjct: 301 PSEDESDKQEESFFGSIGKLLTNAGASVVEIMGALFPGFRKNPPQSYEFQSPPLFQQPQK 360

Query: 297 PPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVD 356
             + W +QES+VIPDEDEPP ++ RTPTP+K+Y  +  KD +K Q   QS+++Y+GW+ D
Sbjct: 361 QVNAWPVQESFVIPDEDEPPSIDPRTPTPRKTY-AFMSKDAEKMQQLWQSRAFYSGWDGD 419

Query: 357 YHHGQQQQMPIHHQQQQHHHRQFSPH---PQTYYEKSC-ETNEIVFGAVQEQDGRREAVV 412
               QQ +     QQQQ  H +   H   P TYYE+S  ETNEIVFGAVQEQDG++  VV
Sbjct: 420 LQQQQQLKHQQQQQQQQLKHHRHQYHSSVPHTYYEQSHEETNEIVFGAVQEQDGKKGTVV 479

Query: 413 IKAVDYGDPRYNHHNIRPRLNYMGYSNSY 441
           IK VDYG   Y+HH IRPR++ MG+ N Y
Sbjct: 480 IKPVDYGQSVYDHHYIRPRISSMGHINKY 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2016189	509	AT1G70280 "AT1G70280" [Arabido	0.975	0.852	0.513	2.5e-104
TAIR|locus:2147780	754	AT5G14890 [Arabidopsis thalian	0.750	0.442	0.512	1.2e-102
TAIR|locus:2199862	545	AT1G23880 "AT1G23880" [Arabido	0.883	0.721	0.535	6.4e-99
TAIR|locus:2099357	493	AT3G14860 "AT3G14860" [Arabido	0.514	0.464	0.519	5.1e-58
TAIR|locus:2199872	400	AT1G23890 "AT1G23890" [Arabido	0.442	0.492	0.434	6.3e-37
UNIPROTKB|Q747P0	365	GSU3225 "NHL repeat domain lip	0.271	0.331	0.333	7e-05
TIGR_CMR|GSU_3225	365	GSU_3225 "NHL repeat domain pr	0.271	0.331	0.333	7e-05
TAIR|locus:2010728	1055	AT1G56500 [Arabidopsis thalian	0.179	0.075	0.341	0.00019

TAIR|locus:2016189 AT1G70280 "AT1G70280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 233/454 (51%), Positives = 285/454 (62%)

Query:     1 MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
             M+KFE GY+VETVF+GSK G+EP+S+ V P+GELL+LDSENSNIYKIS+SLS YSRP+LV
Sbjct:    63 MVKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRPRLV 122

Query:    61 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
              GSPEGY GHVDGR R A++NHPKGL VDDRGNIY+ADT+N AIRKIS+ GVTTIAGGK 
Sbjct:   123 TGSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKISEGGVTTIAGGKT 182

Query:   121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH 180
              R  GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN+AIREIQLH DDC+  Y   F 
Sbjct:   183 VRNGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSGFP 242

Query:   181 LGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVP 240
             LGI VLVAA FFGYMLALLQRRV ++ SS +D   +M    P     Q+P K +RP L+P
Sbjct:   243 LGIAVLVAAGFFGYMLALLQRRVGSIVSSHNDQ--EMFEADPD----QKPMKHSRPSLIP 296

Query:   241 TEDD-FEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVXXXXXXXXXXXNVPPS 299
               D+  EK EE F  S+G+LV N   +V EI     +    +                P 
Sbjct:   297 AGDEQLEKQEETFVVSLGKLVSNAWESVMEILRKKQTGTSFQQYHGTTKQSAAFSTSTP- 355

Query:   300 TWHMQESYVIXXXXXXXXXXXXXXXXKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDY-- 357
              W +QES+VI                +K+Y  +  KD +K Q  +QS+++Y+ W+ ++  
Sbjct:   356 -WPIQESFVIRDEDGPPPVEPRNPTPRKTY-AFMSKDAEKMQQLRQSRAFYSSWDAEFPN 413

Query:   358 ----XXXXXXXXXXXXXXXXXXXXXXXXXXXTYYEKSCE-TNEIVFGAVQEQDGRREAVV 412
                                            TYYE+  E +NEIVFGAVQEQ  +R A  
Sbjct:   414 QQQQQQKQHQKHQHQQQQQQQHRRHYSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRVAKP 473

Query:   413 I-KAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY 445
               K ++ GD   N  N +  L+Y  +S SY   Y
Sbjct:   474 KPKPIESGDQMNN--NTQQNLHYRSHSVSYPYGY 505

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2147780 AT5G14890 [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
 Identities = 185/361 (51%), Positives = 240/361 (66%)

Query:     1 MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKL 59
             M+K+E GY +ETVF+GSK G+EP+++ VSP+G EL+VLDSENSNI+KIS  LS Y +PKL
Sbjct:    71 MVKYESGYNMETVFDGSKLGIEPYAIEVSPNGGELIVLDSENSNIHKISMPLSRYGKPKL 130

Query:    60 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIA-GG 118
             ++GS EGY GHVDG+ + ARMN P+GLA+DDRGNIY+ADT+NMAIRKISD GV+TIA GG
Sbjct:   131 LSGSQEGYTGHVDGKLKEARMNRPRGLAMDDRGNIYVADTINMAIRKISDDGVSTIAAGG 190

Query:   119 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT 178
             +WS G        E  +FS+DFD++YV SSCSLLVIDRGNQ I+EIQLHD DCS    DT
Sbjct:   191 RWSGG-----SKEESMRFSDDFDLIYVSSSCSLLVIDRGNQLIKEIQLHDHDCSQPEPDT 245

Query:   179 --FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD-DPRTQMKRGPPAV--APYQRPPKS 233
                HLG  +LVAA FFGYMLALL RRV+++FSS   D +++     P++  APYQR P+ 
Sbjct:   246 DSLHLGTALLVAAVFFGYMLALLVRRVRSLFSSSSHDTKSKRHVATPSMTMAPYQRYPRP 305

Query:   234 ARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVXXXXXXXXXX 293
              R PL+P + + EK EEGF GS+G+LV+ TGS+V E+  G  ++    P           
Sbjct:   306 VRQPLIPPQHESEK-EEGFLGSLGKLVVKTGSSVSEMMSGSRNVI--PP-----NFHQYH 357

Query:   294 XNVPPSTWHMQESYVIXXXXXXXXXXXXXXXXKKSYHPYTIKDLDKRQYTKQSKSYYNGW 353
                 P+ W +QES+ I                     PY      + Q T Q++SYY  +
Sbjct:   358 HQQEPNQWPVQESFAIPEEDGPPALEPRSGTNPDK--PYL-----RAQGTNQNRSYYQDY 410

Query:   354 E 354
             +
Sbjct:   411 D 411

GO:0005576 "extracellular region" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2199862 AT1G23880 "AT1G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 219/409 (53%), Positives = 261/409 (63%)

Query:     1 MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
             M+KFE GY+VETV +GSK G+EP+S+ V  +GELL+LDS+NSNIY+IS+SLS YSRP+LV
Sbjct:   125 MVKFENGYSVETVLDGSKLGIEPYSIQVLSNGELLILDSQNSNIYQISSSLSLYSRPRLV 184

Query:    61 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
              GSPEGY GHVDGR R AR+N+PKGL VDDRGNIY+ADT+N AIRKIS+ GVTTIAGGK 
Sbjct:   185 TGSPEGYPGHVDGRLRDARLNNPKGLTVDDRGNIYVADTVNNAIRKISEAGVTTIAGGKM 244

Query:   121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH 180
              RG GHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGNQAIREIQLH DDC+D Y   F 
Sbjct:   245 VRGGGHVDGPSEDAKFSNDFDVVYLGSSCSLLVIDRGNQAIREIQLHFDDCADQYGSGFP 304

Query:   181 LGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVP 240
             LGI VLVAA FFGYMLALLQRR+ ++ S   D          AV P Q P K  RPPL+ 
Sbjct:   305 LGIAVLVAAVFFGYMLALLQRRLSSIVSYHTDQEVF-----EAV-PDQDPIKPVRPPLIL 358

Query:   241 TEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVXXXXXXXXXXXNVPPST 300
             T D+ EK EE F G++   + N      E+F G+F   R+K             +   ST
Sbjct:   359 TGDEQEKQEESFLGTLQIFISNAWVFSVELFSGMFPGLRKKQTVGLNFNHQETKHSAFST 418

Query:   301 --WHMQESYVIXXXXXXXXXXXXXXXXKKSYHPYTIKDL-DKRQYTKQSKSYYNGWEVDY 357
               W +QES+VI                 K Y P+  KD  +K Q  +QS++ Y   + ++
Sbjct:   419 TSWPIQESFVIHNKDEPPPVESRNATPGKIY-PFMSKDATEKMQQLRQSRALYRSLDAEF 477

Query:   358 XXXXXXXXXXXXXXXXXXXXXXXXXXXTYYEKSCE-TNEIVFGAVQEQD 405
                                        T YE+S E TNEIVFG  QEQD
Sbjct:   478 LQEQQQEKHQQYHHRHHSTIPY-----TLYEQSSEKTNEIVFGPGQEQD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2099357 AT3G14860 "AT3G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 121/233 (51%), Positives = 155/233 (66%)

Query:     1 MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
             +++FE GY VETV EG+  G+ P+ + VS  GEL  +D  NSNI KI+  LS YSR +LV
Sbjct:    70 VLQFENGYLVETVVEGNDIGVVPYKIRVSDDGELYAVDELNSNIMKITPPLSQYSRGRLV 129

Query:    61 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
             AGS +G  GH DG+P  AR NHP+G+ +DD+GN+Y+ADT+N+AIRKI D+GVTTIAGGK 
Sbjct:   130 AGSFQGKTGHADGKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGK- 188

Query:   121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH 180
             S   G+ DGPSEDAKFSNDFDVVYV  +CSLLVIDRGN A+R+I L ++DC    D +  
Sbjct:   189 SNIAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSIS 248

Query:   181 L-GIFVLVAAAFFGYMLALLQRRVQAMFSSKDD--PRTQMKRGPPAVAPYQRP 230
             L  I +++ A   GY   +LQ+     F SK      T  +   P      RP
Sbjct:   249 LTDILLVIGAVLIGYATCMLQQGFGNSFFSKTQVGSETSYEEEHPGKEKLSRP 301

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2199872 AT1G23890 "AT1G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 89/205 (43%), Positives = 121/205 (59%)

Query:     2 IKFEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLV 60
             I  E GY V TV +G K G+ P+++   P S  L+VLDS  S  Y  S  LS  S     
Sbjct:    23 IVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRF 82

Query:    61 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGK 119
             AG  +G  GHVDG+   +R + P+G AVD +GN+Y+AD  N AIRKIS +G VTTIAGG 
Sbjct:    83 AG--DGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIAGGI 140

Query:   120 WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD-- 177
              S+  GH DGP+++A FS+DF++ +V   C LLV D GN+ IR+I L ++DC +N     
Sbjct:   141 -SKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDCLENSHSNL 199

Query:   178 -TFHLGIFVLVAAAFFGYMLALLQR 201
              T+ L    +V +   G  +    R
Sbjct:   200 GTYSLWSIGIVLSCILGVAIGFAVR 224

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q747P0 GSU3225 "NHL repeat domain lipoprotein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 124 (48.7 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 48/144 (33%), Positives = 66/144 (45%)

Query:    11 ETVFEGSKFGMEP--FS----VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP 64
             ET+  G   GMEP  F+    +AV   G LLV DS NS I +I T+           G P
Sbjct:   215 ETLRIGGS-GMEPGAFNFPTDLAVMADGRLLVTDSLNSRI-QIFTA----------DGKP 262

Query:    65 EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGV 124
              G +G     P   R   PKG+AVD  G+IY+ D+    ++   +TG   +A G      
Sbjct:   263 AGSFGEAGDTP--GRFTRPKGVAVDSEGHIYVCDSQQDMVQIFDETGRLLLAFGDKGSLP 320

Query:   125 GHVDGPSEDAKFSNDFDVVYVGSS 148
             G    PS     +ND  ++YV  +
Sbjct:   321 GQFWMPS-GIHIAND--MIYVSDT 341

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3225 GSU_3225 "NHL repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 124 (48.7 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 48/144 (33%), Positives = 66/144 (45%)

Query:    11 ETVFEGSKFGMEP--FS----VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP 64
             ET+  G   GMEP  F+    +AV   G LLV DS NS I +I T+           G P
Sbjct:   215 ETLRIGGS-GMEPGAFNFPTDLAVMADGRLLVTDSLNSRI-QIFTA----------DGKP 262

Query:    65 EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGV 124
              G +G     P   R   PKG+AVD  G+IY+ D+    ++   +TG   +A G      
Sbjct:   263 AGSFGEAGDTP--GRFTRPKGVAVDSEGHIYVCDSQQDMVQIFDETGRLLLAFGDKGSLP 320

Query:   125 GHVDGPSEDAKFSNDFDVVYVGSS 148
             G    PS     +ND  ++YV  +
Sbjct:   321 GQFWMPS-GIHIAND--MIYVSDT 341

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010728 AT1G56500 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 0.00019, P = 0.00019
 Identities = 29/85 (34%), Positives = 48/85 (56%)

Query:    23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH 82
             P  V  +  G++ + DS N  I K    L P ++ ++V  +  G  G  DG+ +GA+++ 
Sbjct:   805 PLGVLCANDGQIYLTDSYNHKIKK----LDPVTK-RVVTLAGTGKAGFKDGKVKGAQLSE 859

Query:    83 PKGLAVDDRGNIYIADTMNMAIRKI 107
             P GLA+ + G +++ADT N  IR I
Sbjct:   860 PAGLAITENGRLFVADTNNSLIRYI 884


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      445       391   0.00094  117 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  257 KB (2136 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.17u 0.15s 32.32t   Elapsed:  00:00:02
  Total cpu time:  32.17u 0.15s 32.32t   Elapsed:  00:00:02
  Start:  Tue May 21 00:21:53 2013   End:  Tue May 21 00:21:55 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020773001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (542 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	5e-08
pfam01436	28	pfam01436, NHL, NHL repeat	9e-05

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 18/162 (11%)

Query: 22  EPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGY------YGHVDGR 74
           +P  +++SP   EL + DSE+S+I  +          +L+AG    +      +G  DG 
Sbjct: 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGV 797

Query: 75  PRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI--SDTGVTTIAG-GKWSRGVGHVDGPS 131
                + HP G+     G IY+AD+ N  I+K+  +   VTT+AG GK     G  DG +
Sbjct: 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK----AGFKDGKA 853

Query: 132 EDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 173
             A+ S    +  +G +  L V D  N  IR + L+  + ++
Sbjct: 854 LKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEAAE 894

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 38.9 bits (92), Expect = 9e-05
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 81  NHPKGLAVDDRGNIYIADTMNMAIRKI 107
           N P G+AVD  G++Y+AD+ N  ++  
Sbjct: 2   NRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.7
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.62
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.46
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.32
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.3
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.81
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.66
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.54
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.41
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.41
COG3391	381	Uncharacterized conserved protein [Function unknow	98.39
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.36
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.3
COG3391	381	Uncharacterized conserved protein [Function unknow	98.28
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.22
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.14
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.12
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.02
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.96
PRK11028	330	6-phosphogluconolactonase; Provisional	97.94
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.92
PRK11028	330	6-phosphogluconolactonase; Provisional	97.89
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.64
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.5
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.29
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	97.28
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.28
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.23
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.89
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.85
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.82
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.79
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.79
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.73
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.51
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.5
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.35
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.14
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.96
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.88
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.8
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.73
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.64
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.57
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.57
COG3211	616	PhoX Predicted phosphatase [General function predi	95.37
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	95.23
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.2
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	95.04
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.01
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.85
KOG1215	877	consensus Low-density lipoprotein receptors contai	94.19
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.62
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	93.0
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	92.56
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	92.26
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	92.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	89.81
KOG0266	456	consensus WD40 repeat-containing protein [General	89.37
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	89.25
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	88.76
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	88.59
KOG0266	456	consensus WD40 repeat-containing protein [General	88.57
KOG3567	501	consensus Peptidylglycine alpha-amidating monooxyg	88.55
KOG0318	603	consensus WD40 repeat stress protein/actin interac	88.27
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.52
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	86.35
PRK02888	635	nitrous-oxide reductase; Validated	85.8
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	85.68
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	85.18
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	85.16
COG3211	616	PhoX Predicted phosphatase [General function predi	85.15
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	84.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	84.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	84.79
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	84.34
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	84.25
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	83.06
PRK02888	635	nitrous-oxide reductase; Validated	81.81
COG1520	370	FOG: WD40-like repeat [Function unknown]	81.21
KOG0318	603	consensus WD40 repeat stress protein/actin interac	80.53
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	80.18

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.70  E-value=6.5e-16  Score=177.70  Aligned_cols=223  Identities=23%  Similarity=0.281  Sum_probs=155.5

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCC------CcccCCCCCccCccCCCcceEEEcCCC
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPE------GYYGHVDGRPRGARMNHPKGLAVDDRG   92 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~------G~~G~~dG~~~~a~Ln~P~GIavD~dG   92 (445)
                      +.+|.||+++++|. |||+|..+++|++++.++   +....++|...      ...|..+|....+.|++|.||+++++|
T Consensus       739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG  815 (1057)
T PLN02919        739 FAQPSGISLSPDLKELYIADSESSSIRALDLKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG  815 (1057)
T ss_pred             ccCccEEEEeCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC
Confidence            36899999999876 999999999999999874   44555554321      123444565666789999999999999


Q ss_pred             CEEEEeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321           93 NIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus        93 ~LYVAD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      +|||||+.|++|++||.++  +.+++|.  |. .|..++....+.|..|.+|+ ++++|.|||+|++|++|++|++....
T Consensus       816 ~LYVADs~N~rIrviD~~tg~v~tiaG~--G~-~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        816 QIYVADSYNHKIKKLDPATKRVTTLAGT--GK-AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             cEEEEECCCCEEEEEECCCCeEEEEecc--CC-cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCc
Confidence            9999999999999999765  5666652  21 34556777788999999997 68899999999999999999997753


Q ss_pred             e---eec--CCCCccc-------eEEEE-eccceEEEEEEeecCccceeeeccCCCccccCCCCCCCCCCCCCCCCC-CC
Q 013321          171 C---SDN--YDDTFHL-------GIFVL-VAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSA-RP  236 (445)
Q Consensus       171 ~---~~~--~~~g~P~-------gIav~-~~a~~vg~~~~ll~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~  236 (445)
                      .   ...  .+...|.       -+... ....-+..+..+. ..-+.+.+..+..+   .-+++.++|.+|.++.. .+
T Consensus       892 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  967 (1057)
T PLN02919        892 AAEILTLELKGVQPPRPKSKSLKRLRRRSSADTQVIKVDGVT-SLEGDLQLKISLPP---GYHFSKEARSKFEVEVEPEN  967 (1057)
T ss_pred             cceeEeeccccccCCCCcccchhhhhhcccccCceeecCCcc-cccceEEEEEECCC---CCccCcCCCceeEEEeccCC
Confidence            3   111  1111111       11011 1122223334433 45568888888876   88899999999987644 23


Q ss_pred             CCcCCCCCCCCCCCCccchhhhh
Q 013321          237 PLVPTEDDFEKPEEGFFGSIGRL  259 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~  259 (445)
                      .++      .++-.|++.+=|+-
T Consensus       968 ~~~------~~~~~~~~~~~~~~  984 (1057)
T PLN02919        968 AVD------IDPDEGTLSPDGRA  984 (1057)
T ss_pred             ceE------ecCCCceECCCCeE
Confidence            333      34556776555543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.62  E-value=1.8e-14  Score=165.88  Aligned_cols=144  Identities=26%  Similarity=0.362  Sum_probs=111.0

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      ..|.+|++|+ +|+|||+|+.|+||++++.+    |.+...+|.. |..|..+|.+..+.|+.|.||++|++|+ |||||
T Consensus       568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~----G~~i~~ig~~-g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD  642 (1057)
T PLN02919        568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLD----GNFIVQIGST-GEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD  642 (1057)
T ss_pred             CCCceEEEECCCCeEEEEECCCCeEEEEeCC----CCEEEEEccC-CCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence            6799999998 68899999999999999987    5555555542 4566678888889999999999999876 99999


Q ss_pred             CCCCEEEEEcCC-C-cEEEecC-cccCCCCCCCC-CccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321           99 TMNMAIRKISDT-G-VTTIAGG-KWSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus        99 ~~N~rIrkfd~d-G-v~tiaGg-~~G~g~G~~dg-p~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      +.|++|++||.. + +.++++. ..|.  ....+ ......|+.|++|++.+.++.|||+|.++++|++++.....+
T Consensus       643 t~n~~Ir~id~~~~~V~tlag~G~~g~--~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v  717 (1057)
T PLN02919        643 TENHALREIDFVNETVRTLAGNGTKGS--DYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT  717 (1057)
T ss_pred             CCCceEEEEecCCCEEEEEeccCcccC--CCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence            999999999954 4 6677663 1111  01111 122345899999975444889999999999999999866443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.46  E-value=1.1e-12  Score=147.16  Aligned_cols=167  Identities=26%  Similarity=0.326  Sum_probs=120.9

Q ss_pred             ecCCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCC--CCCccEEEecCCCCc------ccCCCCC
Q 013321            4 FEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLS--PYSRPKLVAGSPEGY------YGHVDGR   74 (445)
Q Consensus         4 ~e~G~~v~tv~~Gs~~g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~--~~G~v~~vaG~~~G~------~G~~dG~   74 (445)
                      +.+|...+++--+.....+-+.||++| +|.|||+|+..++|+|+..--.  ..+...+++|.+.-|      ||+ ++.
T Consensus       390 ~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-Gal  468 (1899)
T KOG4659|consen  390 SQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GAL  468 (1899)
T ss_pred             cCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chh
Confidence            456666666655555667889999999 9999999999999999964211  235678899987544      553 556


Q ss_pred             ccCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-cEEEecCcccCC--CCCCCC-CccCcccCCCceEEEECCCCe
Q 013321           75 PRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRG--VGHVDG-PSEDAKFSNDFDVVYVGSSCS  150 (445)
Q Consensus        75 ~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~dG-v~tiaGg~~G~g--~G~~dg-p~~~a~f~~P~gI~~vd~dG~  150 (445)
                      +.+|+|..|.||++|.+|+||+||..  +||++|.+| ++++.|...-..  -.+..+ .-.+.++.||+++++.+-+++
T Consensus       469 A~dA~L~~PkGIa~dk~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdns  546 (1899)
T KOG4659|consen  469 AQDAQLIFPKGIAFDKMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNS  546 (1899)
T ss_pred             cccceeccCCceeEccCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCe
Confidence            78999999999999999999999975  599999999 667655322110  001111 133457899999998788899


Q ss_pred             EEEEEC-------CCCeEEEEECCCCceee
Q 013321          151 LLVIDR-------GNQAIREIQLHDDDCSD  173 (445)
Q Consensus       151 LyVaD~-------gn~rIr~i~l~~~~~~~  173 (445)
                      |||.|.       -+++|++|.-....|..
T Consensus       547 l~Vld~nvvlrit~~~rV~Ii~GrP~hC~~  576 (1899)
T KOG4659|consen  547 LLVLDTNVVLRITVVHRVRIILGRPTHCDL  576 (1899)
T ss_pred             EEEeecceEEEEccCccEEEEcCCcccccc
Confidence            999995       35666655555555554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.32  E-value=1.1e-10  Score=112.34  Aligned_cols=143  Identities=22%  Similarity=0.220  Sum_probs=98.5

Q ss_pred             cEEEEEecC---CCCCCCceEEEEcCCCcEEEEeCCC--------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCcc
Q 013321            8 YTVETVFEG---SKFGMEPFSVAVSPSGELLVLDSEN--------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPR   76 (445)
Q Consensus         8 ~~v~tv~~G---s~~g~~P~gIAVdpdG~LYVaDs~n--------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~   76 (445)
                      ..++.++..   ......|++++++++|+|||+|...        ++|++++++    +++..+..              
T Consensus        70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~--------------  131 (246)
T PF08450_consen   70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD--------------  131 (246)
T ss_dssp             TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE--------------
T ss_pred             CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEec--------------
Confidence            345555553   2245789999999999999999765        579999987    45555443              


Q ss_pred             CccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCC--Cc-----EEEecCcccCCCCCCCCCccCcccCCCceEEEECCC
Q 013321           77 GARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT--GV-----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS  148 (445)
Q Consensus        77 ~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~d--Gv-----~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~d  148 (445)
                        .|..|+||+++++|. |||+|+.+++|.+|+.+  +.     .+++....              ....|-+++ +|.+
T Consensus       132 --~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~  194 (246)
T PF08450_consen  132 --GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSD  194 (246)
T ss_dssp             --EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTT
T ss_pred             --CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCC
Confidence              277899999999997 99999999999999953  32     11111000              012467775 7999


Q ss_pred             CeEEEEECCCCeEEEEECCCCceeecCC-CCccceEEE
Q 013321          149 CSLLVIDRGNQAIREIQLHDDDCSDNYD-DTFHLGIFV  185 (445)
Q Consensus       149 G~LyVaD~gn~rIr~i~l~~~~~~~~~~-~g~P~gIav  185 (445)
                      |+|||++.++++|.+|++++........ ...|..+++
T Consensus       195 G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  195 GNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             S-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEE
T ss_pred             CCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEE
Confidence            9999999999999999999765543221 235555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.30  E-value=7.1e-12  Score=140.71  Aligned_cols=141  Identities=25%  Similarity=0.413  Sum_probs=116.7

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccc-----CCCCCccCccCCCcceEEEcCCCCE
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYG-----HVDGRPRGARMNHPKGLAVDDRGNI   94 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G-----~~dG~~~~a~Ln~P~GIavD~dG~L   94 (445)
                      .+|+.+||+| |+.|||.|  +|.|++++.+    +++..++|.|..|.-     .....+.++.+-.|.+|+|..+|.|
T Consensus       533 eWPT~LaV~Pmdnsl~Vld--~nvvlrit~~----~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l  606 (1899)
T KOG4659|consen  533 EWPTSLAVDPMDNSLLVLD--TNVVLRITVV----HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL  606 (1899)
T ss_pred             ecccceeecCCCCeEEEee--cceEEEEccC----ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Confidence            6899999999 99999999  8899999998    899999999865522     1223456778889999999999999


Q ss_pred             EEEeCCC---CEEEEEcCCC-cEEEecCcccCCC------C---CCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321           95 YIADTMN---MAIRKISDTG-VTTIAGGKWSRGV------G---HVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI  161 (445)
Q Consensus        95 YVAD~~N---~rIrkfd~dG-v~tiaGg~~G~g~------G---~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI  161 (445)
                      |||++..   +|||++.++| +..++|+++-..|      .   ..+..+.+|+|+.|..++ +.++|.|||||.+|-||
T Consensus       607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rI  685 (1899)
T KOG4659|consen  607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRI  685 (1899)
T ss_pred             EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEEecCCchhh
Confidence            9999974   6789999999 7888887764332      1   134468889999999996 89999999999999999


Q ss_pred             EEEECCC
Q 013321          162 REIQLHD  168 (445)
Q Consensus       162 r~i~l~~  168 (445)
                      +.++..-
T Consensus       686 r~Vs~~~  692 (1899)
T KOG4659|consen  686 RKVSARM  692 (1899)
T ss_pred             hhhhhcc
Confidence            9988543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.04  E-value=4.6e-09  Score=101.13  Aligned_cols=137  Identities=24%  Similarity=0.350  Sum_probs=92.2

Q ss_pred             ceEEEEc-CCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           23 PFSVAVS-PSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        23 P~gIAVd-pdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      |.|++++ ++|.|||++..+  +.+++...   +++..++....          ....++.|+++++|++|+|||+|...
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~--~~~~d~~~---g~~~~~~~~~~----------~~~~~~~~ND~~vd~~G~ly~t~~~~  106 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGG--IAVVDPDT---GKVTVLADLPD----------GGVPFNRPNDVAVDPDGNLYVTDSGG  106 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTC--EEEEETTT---TEEEEEEEEET----------TCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred             CceEEEEccCCEEEEEEcCc--eEEEecCC---CcEEEEeeccC----------CCcccCCCceEEEcCCCCEEEEecCC
Confidence            8888888 688888888543  33446552   55655554321          01247899999999999999999875


Q ss_pred             --------CEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce--
Q 013321          102 --------MAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC--  171 (445)
Q Consensus       102 --------~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~--  171 (445)
                              .+|.+++.++......                ..+..|++|++......|||+|+.+++|++++++....  
T Consensus       107 ~~~~~~~~g~v~~~~~~~~~~~~~----------------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~  170 (246)
T PF08450_consen  107 GGASGIDPGSVYRIDPDGKVTVVA----------------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL  170 (246)
T ss_dssp             BCTTCGGSEEEEEEETTSEEEEEE----------------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred             CccccccccceEEECCCCeEEEEe----------------cCcccccceEECCcchheeecccccceeEEEeccccccce
Confidence                    5799999887433221                23667999986444447999999999999999864322  


Q ss_pred             ----ee---cCCCCccceEEEEeccc
Q 013321          172 ----SD---NYDDTFHLGIFVLVAAA  190 (445)
Q Consensus       172 ----~~---~~~~g~P~gIav~~~a~  190 (445)
                          ..   ....+.|.|++++..+.
T Consensus       171 ~~~~~~~~~~~~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  171 SNRRVFIDFPGGPGYPDGLAVDSDGN  196 (246)
T ss_dssp             EEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred             eeeeeEEEcCCCCcCCCcceEcCCCC
Confidence                11   22234699999987543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.81  E-value=3e-07  Score=93.20  Aligned_cols=124  Identities=20%  Similarity=0.243  Sum_probs=83.3

Q ss_pred             CCceEEEEcCCCcEEEEeCC-----------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321           21 MEPFSVAVSPSGELLVLDSE-----------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD   89 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~-----------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD   89 (445)
                      +.|+++.|+++|.+||.|..           .++|+++++.    |.+..+...               .+..|+|||++
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~---------------~~~~~NGla~S  171 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDD---------------DLTIPNGLAFS  171 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecC---------------cEEecCceEEC
Confidence            78999999999999999987           2578888875    333333221               26789999999


Q ss_pred             CCC-CEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECC
Q 013321           90 DRG-NIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLH  167 (445)
Q Consensus        90 ~dG-~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn-~rIr~i~l~  167 (445)
                      +|| .|||+|+..++|.+++-+-.....++...    ....   ...=..|-++ ++|.+|+||++-..+ .+|.+|+++
T Consensus       172 pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~----~~~~---~~~~G~PDG~-~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         172 PDGKTLYVADTPANRIHRYDLDPATGPIGGRRG----FVDF---DEEPGLPDGM-AVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             CCCCEEEEEeCCCCeEEEEecCcccCccCCcce----EEEc---cCCCCCCCce-EEeCCCCEEEecccCCceEEEECCC
Confidence            999 59999999999999985520000000000    0000   0000245555 589999999755554 599999998


Q ss_pred             CCce
Q 013321          168 DDDC  171 (445)
Q Consensus       168 ~~~~  171 (445)
                      +...
T Consensus       244 G~l~  247 (307)
T COG3386         244 GKLL  247 (307)
T ss_pred             CcEE
Confidence            6443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.66  E-value=1.4e-06  Score=89.72  Aligned_cols=150  Identities=15%  Similarity=0.151  Sum_probs=91.6

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCC------------CeEEEEeCCCCCCCc---cEEEecCCCCcccCC
Q 013321            7 GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSEN------------SNIYKISTSLSPYSR---PKLVAGSPEGYYGHV   71 (445)
Q Consensus         7 G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n------------~rI~kid~dg~~~G~---v~~vaG~~~G~~G~~   71 (445)
                      |+.++.++..... ..|.+|++|++|+|||++..+            +||++++... -.|.   .++++.         
T Consensus         1 Gf~~~l~A~~p~~-~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~d-gdG~~d~~~vfa~---------   69 (367)
T TIGR02604         1 GFKVTLFAAEPLL-RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDAD-GDGKYDKSNVFAE---------   69 (367)
T ss_pred             CcEEEEEECCCcc-CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCC-CCCCcceeEEeec---------
Confidence            5667777765443 689999999999999998522            4888886421 0122   233332         


Q ss_pred             CCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEE-cCCC-------cEEEecCcccCCCCCCCCCccCcccCCCceEE
Q 013321           72 DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI-SDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV  143 (445)
Q Consensus        72 dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkf-d~dG-------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~  143 (445)
                             .|+.|.||++.++| |||++.  .+|.++ +.+|       ..++..+. +.  +      .......+++++
T Consensus        70 -------~l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~-~~--~------~~~~~~~~~~l~  130 (367)
T TIGR02604        70 -------ELSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGF-GG--Q------INNHHHSLNSLA  130 (367)
T ss_pred             -------CCCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEcc-CC--C------CCcccccccCce
Confidence                   27789999999999 999985  468888 4433       12222111 00  0      000123466776


Q ss_pred             EECCCCeEEEEECCC-------------------CeEEEEECCCCceee-cCCCCccceEEEEe
Q 013321          144 YVGSSCSLLVIDRGN-------------------QAIREIQLHDDDCSD-NYDDTFHLGIFVLV  187 (445)
Q Consensus       144 ~vd~dG~LyVaD~gn-------------------~rIr~i~l~~~~~~~-~~~~g~P~gIav~~  187 (445)
                       .+++|.|||++..+                   +.|+++++++..... ..+.-.|.|+++..
T Consensus       131 -~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~  193 (367)
T TIGR02604       131 -WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS  193 (367)
T ss_pred             -ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC
Confidence             68999999988732                   467777776643322 22233455555543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.54  E-value=1e-07  Score=63.09  Aligned_cols=28  Identities=46%  Similarity=0.794  Sum_probs=26.6

Q ss_pred             CCCcceEEEcCCCCEEEEeCCCCEEEEE
Q 013321           80 MNHPKGLAVDDRGNIYIADTMNMAIRKI  107 (445)
Q Consensus        80 Ln~P~GIavD~dG~LYVAD~~N~rIrkf  107 (445)
                      |+.|.|||++++|+|||||++|+||++|
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            6789999999999999999999999987

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.41  E-value=1e-05  Score=80.45  Aligned_cols=152  Identities=15%  Similarity=0.205  Sum_probs=93.8

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCC-CC----------CCccEEEecCCCCc------ccCCCCCcc------
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSL-SP----------YSRPKLVAGSPEGY------YGHVDGRPR------   76 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg-~~----------~G~v~~vaG~~~G~------~G~~dG~~~------   76 (445)
                      |..|++|.++|||..||+|+++ .|.|+++.. ..          ++.+.+.+-.+.|.      .|. -|.+.      
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~-yGrLdPa~~~i  180 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA-YGRLDPARNVI  180 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccc-ceecCcccCce
Confidence            4689999999999999999988 999998742 11          11111111111111      111 11111      


Q ss_pred             ----CccCCCcceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeE
Q 013321           77 ----GARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL  151 (445)
Q Consensus        77 ----~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~-dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~L  151 (445)
                          .-+=-.|.|||+.++|.+|++....+.|-+||+ +|...+.--.             ++.-..--. +.+|+-|.+
T Consensus       181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P-------------~~~~~gsRr-iwsdpig~~  246 (353)
T COG4257         181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQP-------------NALKAGSRR-IWSDPIGRA  246 (353)
T ss_pred             eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCC-------------Ccccccccc-cccCccCcE
Confidence                113347899999999999999999999999995 4422111100             000001112 357899999


Q ss_pred             EEEECCCCeEEEEECCCCceee---cCCCCccceEEEEe
Q 013321          152 LVIDRGNQAIREIQLHDDDCSD---NYDDTFHLGIFVLV  187 (445)
Q Consensus       152 yVaD~gn~rIr~i~l~~~~~~~---~~~~g~P~gIav~~  187 (445)
                      |+++.++.++.+|++.......   ......|..+.++.
T Consensus       247 wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~  285 (353)
T COG4257         247 WITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR  285 (353)
T ss_pred             EEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc
Confidence            9999999999999987654332   12223556665543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.41  E-value=4.4e-06  Score=83.01  Aligned_cols=136  Identities=20%  Similarity=0.185  Sum_probs=93.5

Q ss_pred             CCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           19 FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        19 ~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      .|..|+.|+.++||.+|+++.+.+.|-++++.+   |++.++.-..               =.+|++|.+++||..||+|
T Consensus        60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~t---Gev~~ypLg~---------------Ga~Phgiv~gpdg~~Witd  121 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT---GEVETYPLGS---------------GASPHGIVVGPDGSAWITD  121 (353)
T ss_pred             CCCCccccccCCCCceEEecCccccceecCCCC---CceEEEecCC---------------CCCCceEEECCCCCeeEec
Confidence            347899999999999999999999999999984   7777665321               1389999999999999999


Q ss_pred             CCCCEEEEEcC-CC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--c
Q 013321           99 TMNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--N  174 (445)
Q Consensus        99 ~~N~rIrkfd~-dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~--~  174 (445)
                      +++ .|+|+|. ++ ++++.-          ......+.|+.    ++.|+.|+||++.. ++.--++++.......  .
T Consensus       122 ~~~-aI~R~dpkt~evt~f~l----------p~~~a~~nlet----~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa  185 (353)
T COG4257         122 TGL-AIGRLDPKTLEVTRFPL----------PLEHADANLET----AVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA  185 (353)
T ss_pred             Ccc-eeEEecCcccceEEeec----------ccccCCCcccc----eeeCCCccEEEeec-cccceecCcccCceeeecc
Confidence            998 9999997 44 443311          11111222322    23699999999876 3333355544433322  2


Q ss_pred             CCCCccceEEEEec
Q 013321          175 YDDTFHLGIFVLVA  188 (445)
Q Consensus       175 ~~~g~P~gIav~~~  188 (445)
                      ...+.|.||.+...
T Consensus       186 PqG~gpyGi~atpd  199 (353)
T COG4257         186 PQGGGPYGICATPD  199 (353)
T ss_pred             CCCCCCcceEECCC
Confidence            34556888877543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1e-05  Score=83.93  Aligned_cols=140  Identities=22%  Similarity=0.368  Sum_probs=98.8

Q ss_pred             CCCceEEEEcCCC-cEEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EE
Q 013321           20 GMEPFSVAVSPSG-ELLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY   95 (445)
Q Consensus        20 g~~P~gIAVdpdG-~LYVaDs--~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY   95 (445)
                      +..|.+++++++| .+||+|.  .++.|.+++..+.   .+...  .+.       |       ..|.+++++++|+ +|
T Consensus       115 G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~--~~v-------G-------~~P~~~a~~p~g~~vy  175 (381)
T COG3391         115 GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTAT--IPV-------G-------NTPTGVAVDPDGNKVY  175 (381)
T ss_pred             ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEE--Eec-------C-------CCcceEEECCCCCeEE
Confidence            4589999999977 6999999  5799999998742   22222  111       1       1678999999999 99


Q ss_pred             EEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCe-EEEEECCC--CeEEEEECCCCcee
Q 013321           96 IADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGN--QAIREIQLHDDDCS  172 (445)
Q Consensus        96 VAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~-LyVaD~gn--~rIr~i~l~~~~~~  172 (445)
                      |+|..+++|..||..+...+- +..         ......+..|.+++ ++++|. +||++..+  ++|.+++.......
T Consensus       176 v~~~~~~~v~vi~~~~~~v~~-~~~---------~~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~  244 (381)
T COG3391         176 VTNSDDNTVSVIDTSGNSVVR-GSV---------GSLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVT  244 (381)
T ss_pred             EEecCCCeEEEEeCCCcceec-ccc---------ccccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence            999999999999988865542 111         01233567889987 677775 99999988  79999998775443


Q ss_pred             ec--CCCC-ccceEEEEecc
Q 013321          173 DN--YDDT-FHLGIFVLVAA  189 (445)
Q Consensus       173 ~~--~~~g-~P~gIav~~~a  189 (445)
                      ..  .... .|.+++....+
T Consensus       245 ~~~~~~~~~~~~~v~~~p~g  264 (381)
T COG3391         245 ATDLPVGSGAPRGVAVDPAG  264 (381)
T ss_pred             EeccccccCCCCceeECCCC
Confidence            32  1112 46666665543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.36  E-value=1.8e-05  Score=80.43  Aligned_cols=152  Identities=16%  Similarity=0.226  Sum_probs=99.2

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC-
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-  100 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~-  100 (445)
                      +.++.++..|.|++++.+-.++.. +.     +.. +.++-...           ..+++.|+++.++++|.+||.|.. 
T Consensus        69 ~~~~~~d~~g~Lv~~~~g~~~~~~-~~-----~~~~t~~~~~~~-----------~~~~~r~ND~~v~pdG~~wfgt~~~  131 (307)
T COG3386          69 SSGALIDAGGRLIACEHGVRLLDP-DT-----GGKITLLAEPED-----------GLPLNRPNDGVVDPDGRIWFGDMGY  131 (307)
T ss_pred             ccceeecCCCeEEEEccccEEEec-cC-----CceeEEeccccC-----------CCCcCCCCceeEcCCCCEEEeCCCc
Confidence            678888888888888865433332 22     233 44443321           125789999999999999999987 


Q ss_pred             ----------CCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321          101 ----------NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       101 ----------N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~  168 (445)
                                ..+|.++|++| +..+..                ..+..|++|++ ++++ .||++|+..++|++++.+.
T Consensus       132 ~~~~~~~~~~~G~lyr~~p~g~~~~l~~----------------~~~~~~NGla~-SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         132 FDLGKSEERPTGSLYRVDPDGGVVRLLD----------------DDLTIPNGLAF-SPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             cccCccccCCcceEEEEcCCCCEEEeec----------------CcEEecCceEE-CCCCCEEEEEeCCCCeEEEEecCc
Confidence                      24688888655 333311                12667899975 5566 9999999999999999872


Q ss_pred             ---Cc-----eee-cCCCCccceEEEEeccceEEEEEEeecCccceeeeccC
Q 013321          169 ---DD-----CSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD  211 (445)
Q Consensus       169 ---~~-----~~~-~~~~g~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~  211 (445)
                         ..     ... ....|.|.|++++..+.+..   +....+..-..|+.+
T Consensus       195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~---~a~~~g~~v~~~~pd  243 (307)
T COG3386         195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV---AAVWGGGRVVRFNPD  243 (307)
T ss_pred             ccCccCCcceEEEccCCCCCCCceEEeCCCCEEE---ecccCCceEEEECCC
Confidence               11     111 12458999999998765442   222222334455555

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.30  E-value=2.2e-05  Score=80.90  Aligned_cols=129  Identities=19%  Similarity=0.268  Sum_probs=81.7

Q ss_pred             CCceEEEEcCCCcEEEEeCCC-------------------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCC
Q 013321           21 MEPFSVAVSPSGELLVLDSEN-------------------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN   81 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n-------------------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln   81 (445)
                      ..++++++++||.|||++..+                   +.|+++++++   +++..++.                .++
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~----------------G~r  184 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAH----------------GFQ  184 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC---CeEEEEec----------------CcC
Confidence            348899999999999988732                   5688888874   33444432                278


Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCC------CcEEEecCc-ccCCCC---CC-------------CCCccCcccCC
Q 013321           82 HPKGLAVDDRGNIYIADTMNMAIRKISDT------GVTTIAGGK-WSRGVG---HV-------------DGPSEDAKFSN  138 (445)
Q Consensus        82 ~P~GIavD~dG~LYVAD~~N~rIrkfd~d------Gv~tiaGg~-~G~g~G---~~-------------dgp~~~a~f~~  138 (445)
                      +|.||++|++|+||++|..+....+++.-      |-..+.+.. .....+   ..             ........+..
T Consensus       185 np~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a  264 (367)
T TIGR02604       185 NPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTA  264 (367)
T ss_pred             CCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCcc
Confidence            99999999999999999876655555421      100000000 000000   00             00001112347


Q ss_pred             CceEEEECC-------CCeEEEEECCCCeEEEEECCC
Q 013321          139 DFDVVYVGS-------SCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       139 P~gI~~vd~-------dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      |.++++...       .|.++|++...++|.++.++.
T Consensus       265 p~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~  301 (367)
T TIGR02604       265 PCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEP  301 (367)
T ss_pred             ccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeec
Confidence            888887643       479999999999999999864

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=2.8e-05  Score=80.75  Aligned_cols=135  Identities=22%  Similarity=0.236  Sum_probs=97.5

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC-CEEEEe
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYVAD   98 (445)
                      ..|.++++++.|. +||++..+++|.+++....   ++......     |           ..|.+++++++| .+||+|
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---~~~~~~~v-----G-----------~~P~~~~~~~~~~~vYV~n  134 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---TVLGSIPV-----G-----------LGPVGLAVDPDGKYVYVAN  134 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCccc---ceeeEeee-----c-----------cCCceEEECCCCCEEEEEe
Confidence            6799999999777 9999999999999985421   11111111     1           279999999988 599999


Q ss_pred             C--CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCCCceee--
Q 013321           99 T--MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCSD--  173 (445)
Q Consensus        99 ~--~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~-LyVaD~gn~rIr~i~l~~~~~~~--  173 (445)
                      .  .++.|.+||.....+++....|.               .|.+++ ++++|. +||+|..+++|..|+..+.....  
T Consensus       135 ~~~~~~~vsvid~~t~~~~~~~~vG~---------------~P~~~a-~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~  198 (381)
T COG3391         135 AGNGNNTVSVIDAATNKVTATIPVGN---------------TPTGVA-VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS  198 (381)
T ss_pred             cccCCceEEEEeCCCCeEEEEEecCC---------------CcceEE-ECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence            9  57999999987744443322111               467776 677776 99999999999999987765552  


Q ss_pred             ----cCCCCccceEEEEeccc
Q 013321          174 ----NYDDTFHLGIFVLVAAA  190 (445)
Q Consensus       174 ----~~~~g~P~gIav~~~a~  190 (445)
                          ......|.++++..++.
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~  219 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGN  219 (381)
T ss_pred             cccccccCCCCceEEECCCCC
Confidence                33344678888866543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.22  E-value=4.5e-06  Score=70.10  Aligned_cols=69  Identities=17%  Similarity=0.307  Sum_probs=53.0

Q ss_pred             eEEEEcCC-CcEEEEeCC-----------------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321           24 FSVAVSPS-GELLVLDSE-----------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus        24 ~gIAVdpd-G~LYVaDs~-----------------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      .+|+|+++ |.||++|+.                 ++|++++++.+   ++.++++..                |..|+|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~----------------L~fpNG   61 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDG----------------LYFPNG   61 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEE----------------ESSEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhC----------------CCccCe
Confidence            37899997 999999963                 48999999984   666677653                789999


Q ss_pred             EEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 013321           86 LAVDDRGN-IYIADTMNMAIRKISDTG  111 (445)
Q Consensus        86 IavD~dG~-LYVAD~~N~rIrkfd~dG  111 (445)
                      |++++|+. |+||++..+||.|+=-.|
T Consensus        62 Vals~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   62 VALSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             EEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEEcCCCCEEEEEeccCceEEEEEEeC
Confidence            99999998 999999999999985443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.14  E-value=3.7e-06  Score=55.55  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=25.3

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEE
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKI   47 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~ki   47 (445)
                      ..|.|||++++|+|||+|++|+||+++
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            479999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.12  E-value=3.1e-05  Score=79.95  Aligned_cols=140  Identities=15%  Similarity=0.176  Sum_probs=96.6

Q ss_pred             CCceEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           21 MEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        21 ~~P~gIAVdpdG-~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ..|.||+++..| +|||||..- -++++++.|   +....++...       +|    ..+...+++.++++|.||++|+
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g---~~a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDS  179 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEG---GLAELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDS  179 (376)
T ss_pred             CCcceEEeccCCCeEEEEecce-eeEEECCCC---Ccceeccccc-------cC----eeeeecCceeEcCCCeEEEecc
Confidence            579999999965 999999754 578898885   3334444332       22    2477788999999999999998


Q ss_pred             CC-----------------CEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321          100 MN-----------------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI  161 (445)
Q Consensus       100 ~N-----------------~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI  161 (445)
                      ..                 +|+.++|+.. +++                .-...|..|++|+...+...|+|+++...||
T Consensus       180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~----------------VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri  243 (376)
T KOG1520|consen  180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTK----------------VLLDGLYFPNGLALSPDGSFVLVAETTTARI  243 (376)
T ss_pred             ccccchhheEEeeecCCCccceEEecCcccchh----------------hhhhcccccccccCCCCCCEEEEEeecccee
Confidence            53                 3344444322 111                1123477899998655555889999999999


Q ss_pred             EEEECCCCcee----e-cCCCCccceEEEEeccce
Q 013321          162 REIQLHDDDCS----D-NYDDTFHLGIFVLVAAAF  191 (445)
Q Consensus       162 r~i~l~~~~~~----~-~~~~g~P~gIav~~~a~~  191 (445)
                      +++-+.+....    + ..--|+|..|.....+.|
T Consensus       244 ~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~f  278 (376)
T KOG1520|consen  244 KRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHF  278 (376)
T ss_pred             eeeEecCCccCchhhHhhcCCCCCcceeECCCCCE
Confidence            99998875441    1 224678999998865533

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.02  E-value=0.00019  Score=73.17  Aligned_cols=150  Identities=17%  Similarity=0.169  Sum_probs=92.3

Q ss_pred             CCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE
Q 013321           19 FGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI   96 (445)
Q Consensus        19 ~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV   96 (445)
                      .+.+|+.+.++|+|. |||+|.+..+|+.++.+... +.+....... -.           .-..|..|+++++|. +||
T Consensus       142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~~~~~-~~-----------~G~GPRh~~f~pdg~~~Yv  208 (345)
T PF10282_consen  142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTPVDSIK-VP-----------PGSGPRHLAFSPDGKYAYV  208 (345)
T ss_dssp             SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEEEEEE-CS-----------TTSSEEEEEE-TTSSEEEE
T ss_pred             ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEEeeccc-cc-----------cCCCCcEEEEcCCcCEEEE
Confidence            347899999999876 99999999999999876321 2232211100 00           124799999999987 999


Q ss_pred             EeCCCCEEEEEcC---CCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCC--c
Q 013321           97 ADTMNMAIRKISD---TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD--D  170 (445)
Q Consensus        97 AD~~N~rIrkfd~---dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~--~  170 (445)
                      ++..++.|.+|+-   +|..+......-       .+.....-..|.+|++ +++| .|||++++.+.|..|+++..  .
T Consensus       209 ~~e~s~~v~v~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  209 VNELSNTVSVFDYDPSDGSLTEIQTIST-------LPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEEEES-------CETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             ecCCCCcEEEEeecccCCceeEEEEeee-------ccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence            9999999998883   342222111000       0000111147888874 5555 79999999999999998542  2


Q ss_pred             eee----cCCCCccceEEEEecc
Q 013321          171 CSD----NYDDTFHLGIFVLVAA  189 (445)
Q Consensus       171 ~~~----~~~~g~P~gIav~~~a  189 (445)
                      ...    ......|.++++....
T Consensus       281 l~~~~~~~~~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  281 LTLVQTVPTGGKFPRHFAFSPDG  303 (345)
T ss_dssp             EEEEEEEEESSSSEEEEEE-TTS
T ss_pred             eEEEEEEeCCCCCccEEEEeCCC
Confidence            211    1223358888885543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.96  E-value=5e-05  Score=83.99  Aligned_cols=117  Identities=21%  Similarity=0.198  Sum_probs=88.4

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      .+|.|||||- .-++|.+|+.+.+|-+..++|+.   -+++.-.               .|-+|.+|++|+ .|+||.+|
T Consensus      1068 ~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~t---------------dLVNPR~iv~D~~rgnLYwtD 1129 (1289)
T KOG1214|consen 1068 ISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFYT---------------DLVNPRAIVVDPIRGNLYWTD 1129 (1289)
T ss_pred             CCccceeeeeccceeeeeccccchhheeecCCce---eeEEEee---------------cccCcceEEeecccCceeecc
Confidence            6899999998 45799999999999999888642   1222211               377999999999 88899999


Q ss_pred             CC--CCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321           99 TM--NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus        99 ~~--N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      +.  |-.|-..+.|| ...|..               ..-+-.|++|.++.-...|-.+|.|++|+-.+..++..
T Consensus      1130 WnRenPkIets~mDG~NrRili---------------n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~g 1189 (1289)
T KOG1214|consen 1130 WNRENPKIETSSMDGENRRILI---------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTG 1189 (1289)
T ss_pred             ccccCCcceeeccCCccceEEe---------------ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCc
Confidence            97  77899999888 222211               11234688887655556788899999999999887744

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.94  E-value=0.00041  Score=69.47  Aligned_cols=143  Identities=13%  Similarity=0.132  Sum_probs=86.8

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      +..|.+++++|+|. |||++...+.|..++.+.. .+.+..+.-.. ..+....+      -.+|.+|+++++|. |||+
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~-~~p~~~~~------~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLD-MMPADFSD------TRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEe-cCCCcCCC------CccceeEEECCCCCEEEEe
Confidence            46799999999887 8899988899888876521 12222221100 00000001      13577899999998 9999


Q ss_pred             eCCCCEEEEEc--CCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCC--ce
Q 013321           98 DTMNMAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD--DC  171 (445)
Q Consensus        98 D~~N~rIrkfd--~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~--~~  171 (445)
                      +...+.|..|+  .++ ..++.+.. .  .           -..|.++. ++++| .|||+..+++.|..|..+..  ..
T Consensus       246 ~~~~~~I~v~~i~~~~~~~~~~~~~-~--~-----------~~~p~~~~-~~~dg~~l~va~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVLSFEGHQ-P--T-----------ETQPRGFN-IDHSGKYLIAAGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeEEEeEEE-e--c-----------cccCCceE-ECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence            98888888886  344 33322210 0  0           02577776 45555 89999998899988876532  22


Q ss_pred             ee---cCCCCccceEEE
Q 013321          172 SD---NYDDTFHLGIFV  185 (445)
Q Consensus       172 ~~---~~~~g~P~gIav  185 (445)
                      ..   ......|.+|++
T Consensus       311 ~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        311 TELGRYAVGQGPMWVSV  327 (330)
T ss_pred             EEccccccCCCceEEEE
Confidence            22   122345666665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.92  E-value=0.00032  Score=71.57  Aligned_cols=128  Identities=16%  Similarity=0.202  Sum_probs=84.0

Q ss_pred             CCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EE
Q 013321           18 KFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY   95 (445)
Q Consensus        18 ~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY   95 (445)
                      ..+..|..|+++++|. +||++..++.|..++.+.. .|.+..+........+. .+      -+.|.+|+++++|+ ||
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~-~~------~~~~~~i~ispdg~~ly  260 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPEGF-TG------ENAPAEIAISPDGRFLY  260 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCETTS-CS------SSSEEEEEE-TTSSEEE
T ss_pred             ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccccc-cc------cCCceeEEEecCCCEEE
Confidence            4567899999999876 8999999999999876521 14443332211000011 11      24899999999998 99


Q ss_pred             EEeCCCCEEEEEcC---CC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321           96 IADTMNMAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        96 VAD~~N~rIrkfd~---dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~  168 (445)
                      |+..+.+.|..|+-   +| +..+..-..              .-..|.++.+ +++| .|||++...+.|..|+.+.
T Consensus       261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------~G~~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  261 VSNRGSNSISVFDLDPATGTLTLVQTVPT--------------GGKFPRHFAF-SPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEECTTTEEEEEEECTTTTTEEEEEEEEE--------------SSSSEEEEEE--TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEeccCCEEEEEEEecCCCceEEEEEEeC--------------CCCCccEEEE-eCCCCEEEEEecCCCeEEEEEEeC
Confidence            99999999888874   34 333211110              1135888875 5555 7899999999999988653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.89  E-value=0.0004  Score=69.54  Aligned_cols=121  Identities=11%  Similarity=0.071  Sum_probs=78.3

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      ..|.+|+++++|+ ||++....+.|..++.+.  .|.+.......       .      ....|++++++++|. |||++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~-------~------~~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDK--DGIPVAPIQII-------E------GLEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECC--CCCCCCceeec-------c------CCCcccEeEeCCCCCEEEEee
Confidence            4799999999886 888888888888886641  12111111100       0      134689999999986 88999


Q ss_pred             CCCCEEEEEcCC--CcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC
Q 013321           99 TMNMAIRKISDT--GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH  167 (445)
Q Consensus        99 ~~N~rIrkfd~d--Gv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~  167 (445)
                      .+.+.|.++|.+  |.........      ...+    .-..|.++++ +++| .|||++...+.|..++++
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~~~~------~~~~----~g~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQEPAE------VTTV----EGAGPRHMVF-HPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCCEEEEEEECCCCcccccCCCc------eecC----CCCCCceEEE-CCCCCEEEEEecCCCEEEEEEEe
Confidence            999999999843  3211000000      0000    0134777775 5554 789999999999999876

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.64  E-value=0.00044  Score=76.86  Aligned_cols=140  Identities=18%  Similarity=0.151  Sum_probs=104.7

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      .-|.||++|= +--||.+|-..+.|.+-+++|   ++.++++.+               .|..|.|||||- ..+||.+|
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n~---------------~L~SPEGiAVDh~~Rn~ywtD 1086 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVNS---------------GLISPEGIAVDHIRRNMYWTD 1086 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccC---CCCceeecc---------------cCCCccceeeeeccceeeeec
Confidence            3477888886 445999999999999999886   456666554               388999999997 45699999


Q ss_pred             CCCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC--CCCeEEEEECCCCceee--
Q 013321           99 TMNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR--GNQAIREIQLHDDDCSD--  173 (445)
Q Consensus        99 ~~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~--gn~rIr~i~l~~~~~~~--  173 (445)
                      +.+.+|-+..-+|. ..+.+               ..-|.+|.+|+...-.|+||.+|.  .|-.|-..++++..-..  
T Consensus      1087 S~lD~IevA~LdG~~rkvLf---------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRili 1151 (1289)
T KOG1214|consen 1087 SVLDKIEVALLDGSERKVLF---------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILI 1151 (1289)
T ss_pred             cccchhheeecCCceeeEEE---------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEe
Confidence            99999998888882 22211               123678999987777789999996  57888888888865433  


Q ss_pred             cCCCCccceEEEEeccceEE
Q 013321          174 NYDDTFHLGIFVLVAAAFFG  193 (445)
Q Consensus       174 ~~~~g~P~gIav~~~a~~vg  193 (445)
                      ....++|.|+.++.-.-.+-
T Consensus      1152 n~DigLPNGLtfdpfs~~LC 1171 (1289)
T KOG1214|consen 1152 NTDIGLPNGLTFDPFSKLLC 1171 (1289)
T ss_pred             ecccCCCCCceeCcccceee
Confidence            56678999988765433333

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.50  E-value=0.00051  Score=57.75  Aligned_cols=68  Identities=19%  Similarity=0.253  Sum_probs=48.5

Q ss_pred             ceEEEcCC-CCEEEEeCC-----------------CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEE
Q 013321           84 KGLAVDDR-GNIYIADTM-----------------NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV  143 (445)
Q Consensus        84 ~GIavD~d-G~LYVAD~~-----------------N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~  143 (445)
                      ++|+|+++ |.||++|+.                 ++|+.++|+..  ..+++.                 .|..|+||+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----------------~L~fpNGVa   63 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----------------GLYFPNGVA   63 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----------------EESSEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----------------CCCccCeEE
Confidence            47899998 999999993                 57999999765  334432                 366899998


Q ss_pred             EECCCCeEEEEECCCCeEEEEECCC
Q 013321          144 YVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       144 ~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      +..+...|+|+++...||.++-+.|
T Consensus        64 ls~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   64 LSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EcCCCCEEEEEeccCceEEEEEEeC
Confidence            5444446999999999999998765

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.29  E-value=0.0013  Score=65.00  Aligned_cols=76  Identities=24%  Similarity=0.458  Sum_probs=46.8

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ..|.+|+++| .|+|||....+.+|..++.+    |++.-...-..|..|      ....+..|.|||+|++|+|||+.-
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~----G~~~~~~~L~~g~~g------l~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQ----GRVVSSLSLDRGFHG------LSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGGG-------SS---SEEEEEE-TT--EEEEET
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEECCC----CCEEEEEEeCCcccC------cccccCCccEEEECCCCCEEEEcC
Confidence            5799999999 78999999999999999987    554433322222222      223588999999999999999987


Q ss_pred             CCCEEEEE
Q 013321          100 MNMAIRKI  107 (445)
Q Consensus       100 ~N~rIrkf  107 (445)
                      -| +..+|
T Consensus       241 pN-lfy~f  247 (248)
T PF06977_consen  241 PN-LFYRF  247 (248)
T ss_dssp             TT-EEEEE
T ss_pred             Cc-eEEEe
Confidence            55 55554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=97.28  E-value=0.0039  Score=64.73  Aligned_cols=98  Identities=17%  Similarity=0.256  Sum_probs=69.5

Q ss_pred             CcceEEEcCCC-CEEEEeCCCCEEEEEcCCC-cE-EEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-
Q 013321           82 HPKGLAVDDRG-NIYIADTMNMAIRKISDTG-VT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-  157 (445)
Q Consensus        82 ~P~GIavD~dG-~LYVAD~~N~rIrkfd~dG-v~-tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g-  157 (445)
                      .|-||+++..| +|||||.. --+.+++..| .. .++...            .-..+...+++. ++++|.||++|++ 
T Consensus       116 RPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~------------~G~~~kf~N~ld-I~~~g~vyFTDSSs  181 (376)
T KOG1520|consen  116 RPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEA------------EGKPFKFLNDLD-IDPEGVVYFTDSSS  181 (376)
T ss_pred             CcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccc------------cCeeeeecCcee-EcCCCeEEEecccc
Confidence            79999999977 89999986 5688999776 32 222211            122344455665 4669999999964 


Q ss_pred             ----------------CCeEEEEECCCCcee-ecCCCCccceEEEEeccceEE
Q 013321          158 ----------------NQAIREIQLHDDDCS-DNYDDTFHLGIFVLVAAAFFG  193 (445)
Q Consensus       158 ----------------n~rIr~i~l~~~~~~-~~~~~g~P~gIav~~~a~~vg  193 (445)
                                      ++|+.++++...... ...+..+|.|+++.....++.
T Consensus       182 k~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl  234 (376)
T KOG1520|consen  182 KYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVL  234 (376)
T ss_pred             ccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEE
Confidence                            578888887765543 356677899999988777764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.28  E-value=0.024  Score=60.69  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=62.5

Q ss_pred             eecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCC
Q 013321            3 KFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH   82 (445)
Q Consensus         3 ~~e~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~   82 (445)
                      ..+.++.++++++|   ...|.+|++.|||+|||+....++|++++..+   +....+.+.+.-..        ......
T Consensus        15 ~~p~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~---~~~~~~~~l~~v~~--------~~ge~G   80 (454)
T TIGR03606        15 AASENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPET---GEVKVVFTLPEIVN--------DAQHNG   80 (454)
T ss_pred             cCCCCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC---CceeeeecCCceec--------cCCCCc
Confidence            34678888888874   34699999999999999998779999998653   23333433321100        011346


Q ss_pred             cceEEEcCCC-------CEEEEeC---------CCCEEEEEc
Q 013321           83 PKGLAVDDRG-------NIYIADT---------MNMAIRKIS  108 (445)
Q Consensus        83 P~GIavD~dG-------~LYVAD~---------~N~rIrkfd  108 (445)
                      +.|||++|+-       .|||+=+         ...+|.|+.
T Consensus        81 Llglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~  122 (454)
T TIGR03606        81 LLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYT  122 (454)
T ss_pred             eeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEE
Confidence            7799998763       5999832         246788876

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.23  E-value=0.019  Score=54.78  Aligned_cols=137  Identities=12%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      ..|..++++++|. ||++....+.|..++...   ++. ..+....   .+.      ...-..|.+++++++|. +|++
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~---~~~~~~~~~~~---~~~------~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVAT---RKVIKKITFEI---PGV------HPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCc---ceeeeeeeecc---ccc------ccccCCccceEECCCCCEEEEE
Confidence            3578899999887 456655578899898763   222 1111110   000      00112588999999998 5888


Q ss_pred             eCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-cC
Q 013321           98 DTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-NY  175 (445)
Q Consensus        98 D~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~~~~-~~  175 (445)
                      ...+++|.++|...-..+..-..               -..+.++.+ .++| .||++....+.|.++++....+.. ..
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~~~---------------~~~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYLLV---------------GQRVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEEEe---------------CCCcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            87788899998643111100000               013556654 5555 566666667899999988766533 33


Q ss_pred             CCCccceEEE
Q 013321          176 DDTFHLGIFV  185 (445)
Q Consensus       176 ~~g~P~gIav  185 (445)
                      ....|.+|++
T Consensus       289 ~~~~~~~~~~  298 (300)
T TIGR03866       289 VGRLPWGVVV  298 (300)
T ss_pred             cccccceeEe
Confidence            3456777764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.89  E-value=0.025  Score=57.81  Aligned_cols=124  Identities=21%  Similarity=0.230  Sum_probs=73.6

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCC----CCEE
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNIY   95 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d----G~LY   95 (445)
                      ..|.+|++.|||.|||++. .++|++++.++    .. ..+.....-.         ........|||++++    +.||
T Consensus         2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g----~~~~~v~~~~~v~---------~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKDG----SLKTPVADLPEVF---------ADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SSEEEEEEETTSCEEEEET-TTEEEEEETTT----EECEEEEE-TTTB---------TSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CCceEEEEeCCCcEEEEeC-CceEEEEeCCC----cCcceeccccccc---------ccccCCcccceeccccCCCCEEE
Confidence            4799999999999999998 89999999763    33 3333322100         111346789999994    8899


Q ss_pred             EEeCCC--------CEEEEEcCC-C------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC----
Q 013321           96 IADTMN--------MAIRKISDT-G------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR----  156 (445)
Q Consensus        96 VAD~~N--------~rIrkfd~d-G------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~----  156 (445)
                      |+-+..        .+|.++..+ +      ..++.-+..          ......-.-..|+ .+++|.|||+-.    
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p----------~~~~~~H~g~~l~-fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLP----------DTSSGNHNGGGLA-FGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEE----------S-CSSSS-EEEEE-E-TTSEEEEEEB-TTT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeC----------CCCCCCCCCcccc-CCCCCcEEEEeCCCCC
Confidence            987732        467777622 2      112211110          0001112233454 689999998853    


Q ss_pred             ---------CCCeEEEEECCCC
Q 013321          157 ---------GNQAIREIQLHDD  169 (445)
Q Consensus       157 ---------gn~rIr~i~l~~~  169 (445)
                               ..+.|.+|++++.
T Consensus       137 ~~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen  137 DDNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             GGGGCSTTSSTTEEEEEETTSS
T ss_pred             cccccccccccceEEEecccCc
Confidence                     2478999998774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.85  E-value=0.028  Score=57.28  Aligned_cols=135  Identities=21%  Similarity=0.288  Sum_probs=77.8

Q ss_pred             CCceEEEEcCCCcEEEEeCCC------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-
Q 013321           21 MEPFSVAVSPSGELLVLDSEN------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-   93 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-   93 (445)
                      ..+.||++.++|.+||++.+.      ++|++++.+|.    +....-.|....-...+......=....+||+.++|. 
T Consensus        85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~----~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~  160 (326)
T PF13449_consen   85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGR----VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRT  160 (326)
T ss_pred             CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCc----ccceEccccccccccCccccccCCCCeEEEEECCCCCE
Confidence            378899998899999999999      99999999843    3222111211100000000000012456999999999 


Q ss_pred             EEEEeCCC---------------CEEEEEcCC--C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEE
Q 013321           94 IYIADTMN---------------MAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI  154 (445)
Q Consensus        94 LYVAD~~N---------------~rIrkfd~d--G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVa  154 (445)
                      ||++=...               .||.++|..  |  ....+.        ..+.+.....-..+.++++ -+++.|+|.
T Consensus       161 l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y--------~ld~~~~~~~~~~isd~~a-l~d~~lLvL  231 (326)
T PF13449_consen  161 LFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAY--------PLDPPPTAPGDNGISDIAA-LPDGRLLVL  231 (326)
T ss_pred             EEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEE--------eCCccccccCCCCceeEEE-ECCCcEEEE
Confidence            88764432               467777743  3  111111        0111111113356777775 466779999


Q ss_pred             ECC-------CCeEEEEECCC
Q 013321          155 DRG-------NQAIREIQLHD  168 (445)
Q Consensus       155 D~g-------n~rIr~i~l~~  168 (445)
                      .+.       ..+|+++++..
T Consensus       232 ER~~~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  232 ERDFSPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             EccCCCCccceEEEEEEEccc
Confidence            987       45677777654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.82  E-value=0.047  Score=55.59  Aligned_cols=160  Identities=14%  Similarity=0.107  Sum_probs=95.6

Q ss_pred             eEEEEcC---CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe--
Q 013321           24 FSVAVSP---SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD--   98 (445)
Q Consensus        24 ~gIAVdp---dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD--   98 (445)
                      .|+|+..   ...||.+|..+++|-+++..-   ..+ .+.|...      |- ...+. ..|.+|... .|+|||+=  
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f---~~~-~~~g~F~------DP-~iPag-yAPFnIqni-g~~lyVtYA~  207 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSF---RPP-PLPGSFI------DP-ALPAG-YAPFNVQNL-GGTLYVTYAQ  207 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCcc---ccc-cCCCCcc------CC-CCCCC-CCCcceEEE-CCeEEEEEEe
Confidence            4667664   245999999999999998652   112 2223211      00 01111 267888665 57888862  


Q ss_pred             -----------CCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEEC-----CCCeEEEEECCCCeEE
Q 013321           99 -----------TMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-----SSCSLLVIDRGNQAIR  162 (445)
Q Consensus        99 -----------~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd-----~dG~LyVaD~gn~rIr  162 (445)
                                 .+++-|-+||.+|..+.-.             +....|+.||+|+..+     -.|.|+|-+.+.++|-
T Consensus       208 qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~-------------as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~In  274 (336)
T TIGR03118       208 QDADRNDEVAGAGLGYVNVFTLNGQLLRRV-------------ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTIN  274 (336)
T ss_pred             cCCcccccccCCCcceEEEEcCCCcEEEEe-------------ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeE
Confidence                       2356788888888332211             1233588899997432     3478999999999999


Q ss_pred             EEECCCCc-eee-cCCCCccceEEEEeccceEEEEEEeecCccceeeeccCC
Q 013321          163 EIQLHDDD-CSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  212 (445)
Q Consensus       163 ~i~l~~~~-~~~-~~~~g~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~~  212 (445)
                      .|++.... ... ....+.|.-|-.+.+.   ..-..........|+|++.-
T Consensus       275 aFD~~sG~~~g~L~~~~G~pi~i~GLWgL---~fGng~~~~~~ntLyFaAGp  323 (336)
T TIGR03118       275 AYDPQSGAQLGQLLDPDNHPVKVDGLWSL---TFGNGVSGGSANYLYFTAGP  323 (336)
T ss_pred             EecCCCCceeeeecCCCCCeEEecCeEEe---eeCCCcCCCCcceEEEEeCC
Confidence            99986432 222 3445566555555432   12223344455678887654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.79  E-value=0.017  Score=62.98  Aligned_cols=80  Identities=26%  Similarity=0.378  Sum_probs=54.0

Q ss_pred             CCCCceEEEEcC-CCcEEEEeCCCC-------------------eEEEEeCCCCC------CCccEEEecCCCCcccCCC
Q 013321           19 FGMEPFSVAVSP-SGELLVLDSENS-------------------NIYKISTSLSP------YSRPKLVAGSPEGYYGHVD   72 (445)
Q Consensus        19 ~g~~P~gIAVdp-dG~LYVaDs~n~-------------------rI~kid~dg~~------~G~v~~vaG~~~G~~G~~d   72 (445)
                      .+..|.+|+++| +|.|||+.+.++                   +|+++.+.+.-      .-.+.+++|.+........
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            347899999999 789999987666                   89999876431      1112334444321111112


Q ss_pred             CCccCccCCCcceEEEcCCCCEEEEe
Q 013321           73 GRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        73 G~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      +......|+.|.+|++|++|+|||+.
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~e  453 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQE  453 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEe
Confidence            33345679999999999999999864

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.79  E-value=0.034  Score=56.89  Aligned_cols=136  Identities=23%  Similarity=0.271  Sum_probs=74.0

Q ss_pred             CCceEEEEcCCCcEEEEeC-------------CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEE
Q 013321           21 MEPFSVAVSPSGELLVLDS-------------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA   87 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs-------------~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa   87 (445)
                      -.-.+|+++|||.|||+-.             ..+.|+|++.+|+.      ....+.-.....+...-..-|++|.+++
T Consensus       114 H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~------p~dnP~~~~~~~~~~i~A~GlRN~~~~~  187 (331)
T PF07995_consen  114 HNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI------PADNPFVGDDGADSEIYAYGLRNPFGLA  187 (331)
T ss_dssp             S-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-------TTSTTTTSTTSTTTEEEE--SEEEEEE
T ss_pred             CCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC------CCCCccccCCCceEEEEEeCCCccccEE
Confidence            4457799999999999842             23789999887531      1111100000001122233489999999


Q ss_pred             EcCC-CCEEEEeCCC---CEEEEEcCCCcEEEecCcccCCCCC-------------CCCC---ccCcc---cCCCceEEE
Q 013321           88 VDDR-GNIYIADTMN---MAIRKISDTGVTTIAGGKWSRGVGH-------------VDGP---SEDAK---FSNDFDVVY  144 (445)
Q Consensus        88 vD~d-G~LYVAD~~N---~rIrkfd~dGv~tiaGg~~G~g~G~-------------~dgp---~~~a~---f~~P~gI~~  144 (445)
                      +|+. |+||++|.+.   ..|.++...+       ..|.....             ...+   .....   -..|.++++
T Consensus       188 ~d~~tg~l~~~d~G~~~~dein~i~~G~-------nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~  260 (331)
T PF07995_consen  188 FDPNTGRLWAADNGPDGWDEINRIEPGG-------NYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIF  260 (331)
T ss_dssp             EETTTTEEEEEEE-SSSSEEEEEE-TT--------B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEE
T ss_pred             EECCCCcEEEEccCCCCCcEEEEeccCC-------cCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEE
Confidence            9998 9999999874   3455554322       11110000             0000   00001   146778876


Q ss_pred             ECC------CCeEEEEECCCCeEEEEECCCC
Q 013321          145 VGS------SCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       145 vd~------dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      ...      .|.++|++.+..+|+++.++..
T Consensus       261 y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~  291 (331)
T PF07995_consen  261 YRGSAFPEYRGDLFVADYGGGRIWRLDLDED  291 (331)
T ss_dssp             E-SSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred             ECCccCccccCcEEEecCCCCEEEEEeeecC
Confidence            533      5789999999999999998643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.73  E-value=0.015  Score=57.34  Aligned_cols=80  Identities=20%  Similarity=0.315  Sum_probs=56.3

Q ss_pred             ceEEEEcCC-CcEEEEeCCCCeEEEEe--CCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           23 PFSVAVSPS-GELLVLDSENSNIYKIS--TSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        23 P~gIAVdpd-G~LYVaDs~n~rI~kid--~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      |+||+.|.+ -.+|+.|+.|..|..++  ..++.......+.....         .+...-..|.|+++|.+|+||||-+
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk---------~~~~e~~~PDGm~ID~eG~L~Va~~  230 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRK---------SQPFESLEPDGMTIDTEGNLYVATF  230 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEecc---------CCCcCCCCCCcceEccCCcEEEEEe
Confidence            789999975 35899999999995555  44433333333333210         0111234689999999999999999


Q ss_pred             CCCEEEEEcC-CC
Q 013321          100 MNMAIRKISD-TG  111 (445)
Q Consensus       100 ~N~rIrkfd~-dG  111 (445)
                      ...+|.++|+ +|
T Consensus       231 ng~~V~~~dp~tG  243 (310)
T KOG4499|consen  231 NGGTVQKVDPTTG  243 (310)
T ss_pred             cCcEEEEECCCCC
Confidence            9999999995 45

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.084  Score=54.35  Aligned_cols=126  Identities=15%  Similarity=0.212  Sum_probs=78.9

Q ss_pred             CCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE---EEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321           18 KFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK---LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN   93 (445)
Q Consensus        18 ~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~---~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~   93 (445)
                      +.|..|.-|++.|+|. .|+...-|+.|.++.-+.. .|++.   ++.-.+.+..|          -+.-..|.++++|.
T Consensus       188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g----------~~~~aaIhis~dGr  256 (346)
T COG2706         188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTG----------TNWAAAIHISPDGR  256 (346)
T ss_pred             CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCC----------CCceeEEEECCCCC
Confidence            4567899999999988 6999888999888876542 24443   33333333333          23445899999999


Q ss_pred             -EEEEeCCCCEEEEE--cCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321           94 -IYIADTMNMAIRKI--SDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        94 -LYVAD~~N~rIrkf--d~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                       ||++|.+.+.|..|  |.++  ..++.....              .-..|-+..+.....-|+++.-..+.|.+|..+.
T Consensus       257 FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t--------------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         257 FLYASNRGHDSIAVFSVDPDGGKLELVGITPT--------------EGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEEecCCCCeEEEEEEcCCCCEEEEEEEecc--------------CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence             99999998777655  4554  333322111              1124666654334445666666555566666544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.50  E-value=0.035  Score=54.94  Aligned_cols=122  Identities=11%  Similarity=0.161  Sum_probs=64.2

Q ss_pred             CceEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           22 EPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        22 ~P~gIAVdp-dG~LYVaDs~n-~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      .-.|||.|+ ++.|||+--.+ .+|+.+..... ..........  ....      ....+..|.+|++++ .|+|||..
T Consensus       119 G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~~~~--~~~~------~~~~~~d~S~l~~~p~t~~lliLS  189 (248)
T PF06977_consen  119 GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-GFDLFVSDDQ--DLDD------DKLFVRDLSGLSYDPRTGHLLILS  189 (248)
T ss_dssp             --EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE-H--HHH-------HT--SS---EEEEETTTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-ccceeecccc--cccc------ccceeccccceEEcCCCCeEEEEE
Confidence            468999999 46688775433 35666654210 0111111110  0000      122466799999998 67799999


Q ss_pred             CCCCEEEEEcCCCc--EE--EecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 013321           99 TMNMAIRKISDTGV--TT--IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI  164 (445)
Q Consensus        99 ~~N~rIrkfd~dGv--~t--iaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i  164 (445)
                      ..+++|..+|.+|.  ..  +..+..|          -...+..|-||+ .|++|+|||+.-.| +.++|
T Consensus       190 ~es~~l~~~d~~G~~~~~~~L~~g~~g----------l~~~~~QpEGIa-~d~~G~LYIvsEpN-lfy~f  247 (248)
T PF06977_consen  190 DESRLLLELDRQGRVVSSLSLDRGFHG----------LSKDIPQPEGIA-FDPDGNLYIVSEPN-LFYRF  247 (248)
T ss_dssp             TTTTEEEEE-TT--EEEEEE-STTGGG-----------SS---SEEEEE-E-TT--EEEEETTT-EEEEE
T ss_pred             CCCCeEEEECCCCCEEEEEEeCCcccC----------cccccCCccEEE-ECCCCCEEEEcCCc-eEEEe
Confidence            99999999999993  22  2122111          123577899997 68999999998754 66665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.47  E-value=0.22  Score=47.38  Aligned_cols=103  Identities=13%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCC
Q 013321           32 GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT  110 (445)
Q Consensus        32 G~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~d  110 (445)
                      +.+|++...++.|.+++..+   +........                -..|.+++++++|. ||++....+.|+.+|..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t---~~~~~~~~~----------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTAT---LEVTRTFPV----------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             CcEEEEecCCCEEEEEECCC---CceEEEEEC----------------CCCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            46888888888999888753   332222111                11367899999987 77888888899999965


Q ss_pred             C-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc
Q 013321          111 G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       111 G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      . ..+....     .+           ..+..++ .++++ .||++....+.|+.+++....
T Consensus        62 ~~~~~~~~~-----~~-----------~~~~~~~-~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        62 TGEVIGTLP-----SG-----------PDPELFA-LHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             CCcEEEecc-----CC-----------CCccEEE-ECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence            4 2211000     00           0133344 45555 467776667789988886543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.35  E-value=0.18  Score=52.50  Aligned_cols=135  Identities=19%  Similarity=0.212  Sum_probs=72.6

Q ss_pred             ceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           23 PFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        23 P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      +.++++++||. +||+.. ++.|.++|+..   +++. .+.-.                 ..|.||++.+||. |||++.
T Consensus        39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~---~~~v~~i~~G-----------------~~~~~i~~s~DG~~~~v~n~   97 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANR-DGTVSVIDLAT---GKVVATIKVG-----------------GNPRGIAVSPDGKYVYVANY   97 (369)
T ss_dssp             EEEEE-TT-SSEEEEEET-TSEEEEEETTS---SSEEEEEE-S-----------------SEEEEEEE--TTTEEEEEEE
T ss_pred             eeEEEecCCCCEEEEEcC-CCeEEEEECCc---ccEEEEEecC-----------------CCcceEEEcCCCCEEEEEec
Confidence            45678889887 899874 67999999873   3322 22111                 2688999999998 899999


Q ss_pred             CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc---eee
Q 013321          100 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD---CSD  173 (445)
Q Consensus       100 ~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~---~~~  173 (445)
                      ..+.|..+|...   +.++..+....     ++     .-....+|+........+|+-...++|+.++.....   ...
T Consensus        98 ~~~~v~v~D~~tle~v~~I~~~~~~~-----~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~  167 (369)
T PF02239_consen   98 EPGTVSVIDAETLEPVKTIPTGGMPV-----DG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT  167 (369)
T ss_dssp             ETTEEEEEETTT--EEEEEE--EE-T-----TT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred             CCCceeEeccccccceeecccccccc-----cc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence            999999999655   44443322110     00     112233444333333344455666777777744321   112


Q ss_pred             cCCCCccceEEEEec
Q 013321          174 NYDDTFHLGIFVLVA  188 (445)
Q Consensus       174 ~~~~g~P~gIav~~~  188 (445)
                      .....+|.+..+...
T Consensus       168 i~~g~~~~D~~~dpd  182 (369)
T PF02239_consen  168 IKVGRFPHDGGFDPD  182 (369)
T ss_dssp             EE--TTEEEEEE-TT
T ss_pred             ecccccccccccCcc
Confidence            222335555555443

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.14  E-value=0.47  Score=49.03  Aligned_cols=166  Identities=14%  Similarity=0.204  Sum_probs=105.7

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      +++..-++|+|+ |+++|-+..||..++.+.   |.+.-..-.. -.+|           ..|.-|+|.|+|. .|+.--
T Consensus       146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d---g~L~~~~~~~-v~~G-----------~GPRHi~FHpn~k~aY~v~E  210 (346)
T COG2706         146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDD---GKLTPADPAE-VKPG-----------AGPRHIVFHPNGKYAYLVNE  210 (346)
T ss_pred             ccceeeeCCCCCEEEEeecCCceEEEEEccc---Cccccccccc-cCCC-----------CCcceEEEcCCCcEEEEEec
Confidence            478899999985 899999999999998762   3332211100 0111           3699999999998 888888


Q ss_pred             CCCEEEEEcCC---C-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc--ee
Q 013321          100 MNMAIRKISDT---G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD--CS  172 (445)
Q Consensus       100 ~N~rIrkfd~d---G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~--~~  172 (445)
                      .|+.|.++.-+   | ...+.--.        ..|..-...++...|. +.++| -||++|++-+.|..|..+...  ..
T Consensus       211 L~stV~v~~y~~~~g~~~~lQ~i~--------tlP~dF~g~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~~~g~L~  281 (346)
T COG2706         211 LNSTVDVLEYNPAVGKFEELQTID--------TLPEDFTGTNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDPDGGKLE  281 (346)
T ss_pred             cCCEEEEEEEcCCCceEEEeeeec--------cCccccCCCCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcCCCCEEE
Confidence            89998877632   3 22221100        0111111223445555 56666 789999999999998876542  22


Q ss_pred             e----cCCCCccceEEEEeccceEEEEEEeecCccceeeeccCCCc
Q 013321          173 D----NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPR  214 (445)
Q Consensus       173 ~----~~~~g~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~~~~  214 (445)
                      .    ....-+|-+..+..++.+   +.+.-|....-.+|..++..
T Consensus       282 ~~~~~~teg~~PR~F~i~~~g~~---Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         282 LVGITPTEGQFPRDFNINPSGRF---LIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEeccCCcCCccceeCCCCCE---EEEEccCCCcEEEEEEcCCC
Confidence            1    233335888888776544   44666777777788877644

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.96  E-value=0.24  Score=49.10  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=55.2

Q ss_pred             cCCCcceEEEcCCCC-EEEEeCCCCEEEEEc---CCCc---EEEecC-cccCCCCCCCCCccCcccCCCceEEEECCCCe
Q 013321           79 RMNHPKGLAVDDRGN-IYIADTMNMAIRKIS---DTGV---TTIAGG-KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS  150 (445)
Q Consensus        79 ~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd---~dGv---~tiaGg-~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~  150 (445)
                      .+--|+||+.|.+-. +|+.|+.|..|..+|   ..|.   ....+. ...+        ..  .-..|-+++ +|.+|.
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~--------~~--e~~~PDGm~-ID~eG~  224 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ--------PF--ESLEPDGMT-IDTEGN  224 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC--------Cc--CCCCCCcce-EccCCc
Confidence            355788999997655 999999999996666   3441   111110 0000        00  012466775 799999


Q ss_pred             EEEEECCCCeEEEEECCCCce
Q 013321          151 LLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       151 LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      |||+-..+++|.++++.....
T Consensus       225 L~Va~~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  225 LYVATFNGGTVQKVDPTTGKI  245 (310)
T ss_pred             EEEEEecCcEEEEECCCCCcE
Confidence            999999999999999876443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.88  E-value=1.6  Score=44.55  Aligned_cols=30  Identities=30%  Similarity=0.558  Sum_probs=28.4

Q ss_pred             CcceEEEcCCCCEEEEeCCC------CEEEEEcCCC
Q 013321           82 HPKGLAVDDRGNIYIADTMN------MAIRKISDTG  111 (445)
Q Consensus        82 ~P~GIavD~dG~LYVAD~~N------~rIrkfd~dG  111 (445)
                      -+.||++.++|.+||++-+.      ++|++++.+|
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G  121 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG  121 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC
Confidence            68899998899999999999      9999999988

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.80  E-value=0.071  Score=44.58  Aligned_cols=31  Identities=16%  Similarity=0.420  Sum_probs=27.4

Q ss_pred             cCCCcceEEEcCCCC-EEEEeCCCCEEEEEcC
Q 013321           79 RMNHPKGLAVDDRGN-IYIADTMNMAIRKISD  109 (445)
Q Consensus        79 ~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~  109 (445)
                      .|..|+||+++++++ ||||+...+.|+++..
T Consensus        52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   52 GFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             cCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            388999999999776 9999999999998763

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.73  E-value=0.42  Score=49.76  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=73.0

Q ss_pred             CcEEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC-------
Q 013321           32 GELLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT-------   99 (445)
Q Consensus        32 G~LYVaDs~----n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~-------   99 (445)
                      .++||.|..    .++|.+||.+.   +++...+-.                =..|.++ +.+||. ||||.+       
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~---~~v~g~i~~----------------G~~P~~~-~spDg~~lyva~~~~~R~~~   72 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEA---GRVLGMTDG----------------GFLPNPV-VASDGSFFAHASTVYSRIAR   72 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCC---CEEEEEEEc----------------cCCCcee-ECCCCCEEEEEecccccccc
Confidence            369999987    38999999763   333221111                1268887 999887 999999       


Q ss_pred             --CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECC-CCeEEEEECCCCceee
Q 013321          100 --MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-NQAIREIQLHDDDCSD  173 (445)
Q Consensus       100 --~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~g-n~rIr~i~l~~~~~~~  173 (445)
                        ..+.|.+||......+.--..+.      .| .-.....|..++ +.++| .|||++.. .+.|-+|++.......
T Consensus        73 G~~~d~V~v~D~~t~~~~~~i~~p~------~p-~~~~~~~~~~~~-ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        73 GKRTDYVEVIDPQTHLPIADIELPE------GP-RFLVGTYPWMTS-LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCCCCEEEEEECccCcEEeEEccCC------Cc-hhhccCccceEE-ECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence              88999999966533221111100      00 011234566666 56666 68999966 8999999988765544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.64  E-value=0.24  Score=53.20  Aligned_cols=118  Identities=16%  Similarity=0.243  Sum_probs=67.7

Q ss_pred             CCceEEEEcCC-------CcEEEEeC---------CCCeEEEEeCCC--CCCC-ccEEEecCCCCcccCCCCCccCccCC
Q 013321           21 MEPFSVAVSPS-------GELLVLDS---------ENSNIYKISTSL--SPYS-RPKLVAGSPEGYYGHVDGRPRGARMN   81 (445)
Q Consensus        21 ~~P~gIAVdpd-------G~LYVaDs---------~n~rI~kid~dg--~~~G-~v~~vaG~~~G~~G~~dG~~~~a~Ln   81 (445)
                      ..+.|||++|+       +.|||+-+         ...+|.|+..+.  .... ...++.+.+.+ ..+           
T Consensus        79 ~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H-----------  146 (454)
T TIGR03606        79 NGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDH-----------  146 (454)
T ss_pred             CceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCc-----------
Confidence            45799999875       35899842         246898887642  1112 22333343321 112           


Q ss_pred             CcceEEEcCCCCEEEEeCC--------------------------------CCEEEEEcCCCcEEEecCcccCCCCCCCC
Q 013321           82 HPKGLAVDDRGNIYIADTM--------------------------------NMAIRKISDTGVTTIAGGKWSRGVGHVDG  129 (445)
Q Consensus        82 ~P~GIavD~dG~LYVAD~~--------------------------------N~rIrkfd~dGv~tiaGg~~G~g~G~~dg  129 (445)
                      .=..|++++||.|||+=..                                .+.|.||+.+|.. -+.+.      ..++
T Consensus       147 ~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsi-P~dNP------f~~g  219 (454)
T TIGR03606       147 NGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSI-PKDNP------SING  219 (454)
T ss_pred             CCceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCC-CCCCC------ccCC
Confidence            2337889999999984322                                2257777777610 00000      0011


Q ss_pred             C-cc--CcccCCCceEEEECCCCeEEEEECCC
Q 013321          130 P-SE--DAKFSNDFDVVYVGSSCSLLVIDRGN  158 (445)
Q Consensus       130 p-~~--~a~f~~P~gI~~vd~dG~LyVaD~gn  158 (445)
                      . .+  ..-+.+|+++++ +++|.||++|-+-
T Consensus       220 ~~~eIyA~G~RNp~Gla~-dp~G~Lw~~e~Gp  250 (454)
T TIGR03606       220 VVSHIFTYGHRNPQGLAF-TPDGTLYASEQGP  250 (454)
T ss_pred             CcceEEEEeccccceeEE-CCCCCEEEEecCC
Confidence            0 01  124689999974 7799999999765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.57  E-value=0.53  Score=49.00  Aligned_cols=65  Identities=12%  Similarity=0.179  Sum_probs=44.5

Q ss_pred             EEEcCCCC-EEEEe-CC--------CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC--e
Q 013321           86 LAVDDRGN-IYIAD-TM--------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC--S  150 (445)
Q Consensus        86 IavD~dG~-LYVAD-~~--------N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG--~  150 (445)
                      |+++++|. |||+- ..        .+.|.+||...   +..+.-|                  ..|++|+ +++++  .
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~ia-vS~Dgkp~  313 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSIN-VSQDAKPL  313 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEE-ECCCCCeE
Confidence            99998766 99953 22        26899999655   2333211                  1567776 45555  5


Q ss_pred             EEEEECCCCeEEEEECCCC
Q 013321          151 LLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       151 LyVaD~gn~rIr~i~l~~~  169 (445)
                      ||+++..++.|..|+....
T Consensus       314 lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEEeCCCCCcEEEEECcCC
Confidence            7888888899999997664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.57  E-value=0.043  Score=55.27  Aligned_cols=64  Identities=22%  Similarity=0.387  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-CccEEEecCCCCcccCCCCCccCccCCCcceEEEcC--CCCEEEEe
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPY-SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIAD   98 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~-G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD   98 (445)
                      +-.|+++|++|+||+++..++.|.++++++.+. ....+++-.+             ..|.+|.+++++.  +|.|||.-
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEEEEE
Confidence            457999999999999999999999999985332 1455565443             1389999999999  99999975

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=95.37  E-value=0.064  Score=58.42  Aligned_cols=81  Identities=23%  Similarity=0.291  Sum_probs=53.3

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCC----------------eEEEEeCCCC------CCCccEEEecCCCCcccCCCCCccC
Q 013321           21 MEPFSVAVSP-SGELLVLDSENS----------------NIYKISTSLS------PYSRPKLVAGSPEGYYGHVDGRPRG   77 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~----------------rI~kid~dg~------~~G~v~~vaG~~~G~~G~~dG~~~~   77 (445)
                      ..|.+|++.| .|++|++.+.|+                +|+|+-+...      ....+-+.+|.+.-..+........
T Consensus       417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~  496 (616)
T COG3211         417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA  496 (616)
T ss_pred             cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence            6799999999 688999998765                5777765431      1122344455543222211222333


Q ss_pred             ccCCCcceEEEcCCCCEEEEeCCC
Q 013321           78 ARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        78 a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      .-|+.|.+|+||+.|+|||+-=++
T Consensus       497 ~~f~~PDnl~fD~~GrLWi~TDg~  520 (616)
T COG3211         497 NWFNSPDNLAFDPWGRLWIQTDGS  520 (616)
T ss_pred             ccccCCCceEECCCCCEEEEecCC
Confidence            569999999999999999975443

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=95.23  E-value=0.31  Score=51.52  Aligned_cols=134  Identities=21%  Similarity=0.301  Sum_probs=78.8

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeE------EEEeCCCCCCCccEEEecCC-CCcccCCCCCcc---------CccCCCc
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNI------YKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPR---------GARMNHP   83 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI------~kid~dg~~~G~v~~vaG~~-~G~~G~~dG~~~---------~a~Ln~P   83 (445)
                      .+|.|++++| +|.||++|.+...+      -.+ ..|..+|=+....|.. .+... .++...         -+.-..|
T Consensus       239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G~nYGWP~~~~G~~~~g~~~-~~~~~~~~~~~p~~~~~~h~Ap  316 (399)
T COG2133         239 RNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPGKNYGWPYAYFGQNYDGRAI-PDGTVVAGAIQPVYTWAPHIAP  316 (399)
T ss_pred             CCccceeecCCCCcEEEEecCCCcccCccccccc-ccCCccCCceeccCcccCcccc-CCCcccccccCCceeecccccc
Confidence            6799999999 59999999766333      111 2222233333332211 01100 011110         0111356


Q ss_pred             ceEEEcCC-------CCEEEEeCCCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEE
Q 013321           84 KGLAVDDR-------GNIYIADTMNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID  155 (445)
Q Consensus        84 ~GIavD~d-------G~LYVAD~~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD  155 (445)
                      .||+|-..       |.+||+-.+.-.+.+.+.+|. ..+..+       .+.+   + .-..|.||+ +.+||.|||+|
T Consensus       317 sGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~-------fl~~---d-~~gR~~dV~-v~~DGallv~~  384 (399)
T COG2133         317 SGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTG-------FLSG---D-LGGRPRDVA-VAPDGALLVLT  384 (399)
T ss_pred             ceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEE-------EEec---C-CCCcccceE-ECCCCeEEEee
Confidence            89999842       689999998877888888773 222111       1110   0 004678886 79999999998


Q ss_pred             CC-CCeEEEEECCC
Q 013321          156 RG-NQAIREIQLHD  168 (445)
Q Consensus       156 ~g-n~rIr~i~l~~  168 (445)
                      -. +++|++++..+
T Consensus       385 D~~~g~i~Rv~~~~  398 (399)
T COG2133         385 DQGDGRILRVSYAG  398 (399)
T ss_pred             cCCCCeEEEecCCC
Confidence            86 77999998643

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.20  E-value=1.2  Score=45.65  Aligned_cols=162  Identities=12%  Similarity=0.055  Sum_probs=81.7

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCC-----CCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEE
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTS-----LSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY   95 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~d-----g~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LY   95 (445)
                      .+|.||++.|.|-+||+|.+++....++.+     +..  +. +++-.+ ...+       ...-..|+||++......-
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~--~~-L~vtiP-~~~~-------~~~~~~PTGiVfN~~~~F~   91 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ--DP-LVVVIP-APPP-------LAAEGTPTGQVFNGSDTFV   91 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCc--cc-eEEEec-CCCC-------CCCCCCccEEEEeCCCceE
Confidence            789999999999999999999999888876     221  11 111111 0001       0112358899888644433


Q ss_pred             EEeCCCC--EEEEEc-CCC-cEEEecCcccC----CCCCCCCCccCcccCCCceEEEE--CCCCeEEEEECCCCeEEEEE
Q 013321           96 IADTMNM--AIRKIS-DTG-VTTIAGGKWSR----GVGHVDGPSEDAKFSNDFDVVYV--GSSCSLLVIDRGNQAIREIQ  165 (445)
Q Consensus        96 VAD~~N~--rIrkfd-~dG-v~tiaGg~~G~----g~G~~dgp~~~a~f~~P~gI~~v--d~dG~LyVaD~gn~rIr~i~  165 (445)
                      |.-....  ....|. .+| +.-+.....-.    ..--.|.....+ ..  .++++.  ...+.||.+|..+++|.+|+
T Consensus        92 vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~ga-vY--kGLAi~~~~~~~~LYaadF~~g~IDVFd  168 (336)
T TIGR03118        92 VSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGN-VY--KGLAVGPTGGGDYLYAANFRQGRIDVFK  168 (336)
T ss_pred             EcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcc-ee--eeeEEeecCCCceEEEeccCCCceEEec
Confidence            3332211  111222 233 22221100000    000000000000 00  233322  22468999999999999998


Q ss_pred             CCCCceee--------cCCCCccceEEEEeccceEEEEE
Q 013321          166 LHDDDCSD--------NYDDTFHLGIFVLVAAAFFGYML  196 (445)
Q Consensus       166 l~~~~~~~--------~~~~g~P~gIav~~~a~~vg~~~  196 (445)
                      ........        ....-.|-+|..+.+..++-|+.
T Consensus       169 ~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~  207 (336)
T TIGR03118       169 GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQ  207 (336)
T ss_pred             CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEe
Confidence            65432211        11122567787777777776655

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=95.04  E-value=0.049  Score=37.70  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             cCCCcceEEEcCC-CCEEEEeCCCCEEEEEcCCC
Q 013321           79 RMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG  111 (445)
Q Consensus        79 ~Ln~P~GIavD~d-G~LYVAD~~N~rIrkfd~dG  111 (445)
                      .+..|.|||+|+. +.||.+|....+|.+.+-+|
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            4789999999985 45999999999999999776

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.01  E-value=0.082  Score=38.01  Aligned_cols=41  Identities=27%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             CcEEEEeCCCC-eEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC
Q 013321           32 GELLVLDSENS-NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD   90 (445)
Q Consensus        32 G~LYVaDs~n~-rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~   90 (445)
                      |.||.+|...+ .|.+.+.+|+   ...+++..               .+.+|.|||||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~---------------~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGS---NRRTVISD---------------DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTST---SEEEEEES---------------STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCC---CeEEEEEC---------------CCCCcCEEEECC
Confidence            57999999999 9999999963   23444332               288999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.85  E-value=0.094  Score=53.15  Aligned_cols=77  Identities=23%  Similarity=0.418  Sum_probs=53.4

Q ss_pred             CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .-.|+.+++ +|.|+|...+.++++.++..|...+.+.+..|.. |.         ...+..|.|||+|++|+|||+---
T Consensus       234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~-gL---------~~dipqaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNH-GL---------SSDIPQAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             ccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCC-CC---------cccCCCcceeEECCCCCEEEEecC
Confidence            346788887 6789999889999999999865544444443331 22         123668899999999999987654


Q ss_pred             CCEEEEEcC
Q 013321          101 NMAIRKISD  109 (445)
Q Consensus       101 N~rIrkfd~  109 (445)
                      | .-.+|.+
T Consensus       304 n-lfy~F~~  311 (316)
T COG3204         304 N-LFYRFTP  311 (316)
T ss_pred             C-cceeccc
Confidence            3 3344443

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=94.19  E-value=0.47  Score=54.67  Aligned_cols=134  Identities=18%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.++++|- .+++|.+|..+..|.+.+.++..   -.+++..               .+..|..+++++ .|.+|.+|
T Consensus       480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~---------------~l~~~r~~~v~p~~g~~~wtd  541 (877)
T KOG1215|consen  480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSK---------------DLDLPRSIAVDPEKGLMFWTD  541 (877)
T ss_pred             cccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEec---------------CCCCccceeeccccCeeEEec
Confidence            5689999998 77899999999999999877532   2233322               246899999998 77899999


Q ss_pred             CC-CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCC-eEEEEECCCCcee--
Q 013321           99 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQLHDDDCS--  172 (445)
Q Consensus        99 ~~-N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~-rIr~i~l~~~~~~--  172 (445)
                      ++ ..+|.+-..+|  ..++..                ..+.+|.++++.-.+..+|-+|.-.. .|..+..++..-.  
T Consensus       542 ~~~~~~i~ra~~dg~~~~~l~~----------------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~  605 (877)
T KOG1215|consen  542 WGQPPRIERASLDGSERAVLVT----------------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVV  605 (877)
T ss_pred             CCCCchhhhhcCCCCCceEEEe----------------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEe
Confidence            98 55888888888  233211                11568889988778889999999887 7888888875542  


Q ss_pred             ecCCCCccceEEEEec
Q 013321          173 DNYDDTFHLGIFVLVA  188 (445)
Q Consensus       173 ~~~~~g~P~gIav~~~  188 (445)
                      .......|.++++...
T Consensus       606 ~~~~~~~p~~~~~~~~  621 (877)
T KOG1215|consen  606 DSEDLPHPFGLSVFED  621 (877)
T ss_pred             ccccCCCceEEEEecc
Confidence            2344556777776654

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.62  E-value=0.15  Score=35.18  Aligned_cols=31  Identities=23%  Similarity=0.030  Sum_probs=27.6

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCC
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSL   51 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg   51 (445)
                      ..|.+||+|+ .+.||.+|...+.|.+.+.+|
T Consensus         9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            5799999999 567999999999999999875

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=93.00  E-value=0.97  Score=49.48  Aligned_cols=80  Identities=21%  Similarity=0.408  Sum_probs=52.2

Q ss_pred             ccCCCcceEEEcC-CCCEEEEeCCCC-------------------EEEEEcCCCc----------EEEecCcccCCCCCC
Q 013321           78 ARMNHPKGLAVDD-RGNIYIADTMNM-------------------AIRKISDTGV----------TTIAGGKWSRGVGHV  127 (445)
Q Consensus        78 a~Ln~P~GIavD~-dG~LYVAD~~N~-------------------rIrkfd~dGv----------~tiaGg~~G~g~G~~  127 (445)
                      ..|+.|.+|++++ +|.||||-+.+.                   +|.+++..+-          ..+.++.........
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            4799999999998 688999988766                   7888885431          111122110000111


Q ss_pred             CCCccCcccCCCceEEEECCCCeEEEEECCC
Q 013321          128 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  158 (445)
Q Consensus       128 dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn  158 (445)
                      ........|..|-.|+ ++++|.|||+.-++
T Consensus       427 ~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~~  456 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLA-FDPDGNLWIQEDGG  456 (524)
T ss_pred             cCcccCCCcCCCCceE-ECCCCCEEEEeCCC
Confidence            2234456789999997 68899999886543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=92.56  E-value=3.7  Score=41.69  Aligned_cols=134  Identities=18%  Similarity=0.150  Sum_probs=83.4

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc----CCCCEEE
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGNIYI   96 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD----~dG~LYV   96 (445)
                      .+.++|..+++|+++|+-...+.|++|+..   .|++....|.+.+.    +-......|..-++..+-    .++.|-|
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~---tG~I~W~lgG~~~~----df~~~~~~f~~QHdar~~~~~~~~~~Isl  216 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRNTSTIYKIDPS---TGKIIWRLGGKRNS----DFTLPATNFSWQHDARFLNESNDDGTISL  216 (299)
T ss_pred             cEeeeeeecCCccEEEEecccCEEEEEECC---CCcEEEEeCCCCCC----cccccCCcEeeccCCEEeccCCCCCEEEE
Confidence            566788888999999999888999999976   37777777654211    111133456666666665    6777777


Q ss_pred             EeC----------CCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEE
Q 013321           97 ADT----------MNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ  165 (445)
Q Consensus        97 AD~----------~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~  165 (445)
                      -|-          ...+|..+|.... .++.-.....    .+.     .++.-.+-+-.-++|+++|....+.++..++
T Consensus       217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~----~~~-----~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~  287 (299)
T PF14269_consen  217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDH----PDG-----FYSPSQGSAQRLPNGNVLIGWGNNGRISEFT  287 (299)
T ss_pred             EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecC----CCc-----ccccCCCcceECCCCCEEEecCCCceEEEEC
Confidence            776          3567888886652 2221111000    000     0000011122347799999999999999999


Q ss_pred             CCCCc
Q 013321          166 LHDDD  170 (445)
Q Consensus       166 l~~~~  170 (445)
                      .++..
T Consensus       288 ~~G~v  292 (299)
T PF14269_consen  288 PDGEV  292 (299)
T ss_pred             CCCCE
Confidence            88754

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.48  E-value=0.2  Score=50.41  Aligned_cols=59  Identities=22%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECC--CCeEEE
Q 013321           82 HPKGLAVDDRGNIYIADTMNMAIRKISDTG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS--SCSLLV  153 (445)
Q Consensus        82 ~P~GIavD~dG~LYVAD~~N~rIrkfd~dG------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~--dG~LyV  153 (445)
                      .-.|+++|++|+||++|..++.|.+.++++      ..+++-              ..-.+.+|.++. ++.  +|.|||
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--------------d~~~l~~pd~~~-i~~~~~g~L~v  251 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--------------DPRTLQWPDGLK-IDPEGDGYLWV  251 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---------------CC-GSSEEEEE-E-T--TS-EEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--------------cCceeeccceee-eccccCceEEE
Confidence            346999999999999999999999999887      223321              122488999997 677  899999


Q ss_pred             EE
Q 013321          154 ID  155 (445)
Q Consensus       154 aD  155 (445)
                      .-
T Consensus       252 ~s  253 (287)
T PF03022_consen  252 LS  253 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=92.26  E-value=1.1  Score=46.62  Aligned_cols=98  Identities=16%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC-
Q 013321           34 LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG-  111 (445)
Q Consensus        34 LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~dG-  111 (445)
                      +||++.+++.|..+|...   .++.......               -+-+.++++.+||. +||+.. .+.|.+||..- 
T Consensus         8 ~~V~~~~~~~v~viD~~t---~~~~~~i~~~---------------~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~   68 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGAT---NKVVARIPTG---------------GAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATG   68 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT----SEEEEEE-S---------------TTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSS
T ss_pred             EEEEecCCCEEEEEECCC---CeEEEEEcCC---------------CCceeEEEecCCCCEEEEEcC-CCeEEEEECCcc
Confidence            457888888899888763   2222222110               01245788899998 999986 57999999644 


Q ss_pred             --cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCC
Q 013321          112 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       112 --v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~  169 (445)
                        +.++..|.                  .|.+++ ++++| .|||++...+.|..++....
T Consensus        69 ~~v~~i~~G~------------------~~~~i~-~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   69 KVVATIKVGG------------------NPRGIA-VSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             SEEEEEE-SS------------------EEEEEE-E--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             cEEEEEecCC------------------CcceEE-EcCCCCEEEEEecCCCceeEeccccc
Confidence              34443322                  356666 45565 68889988999999997663

...

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=92.21  E-value=3.2  Score=42.79  Aligned_cols=142  Identities=16%  Similarity=0.180  Sum_probs=78.3

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..-+.|++ .++++|++++.-+++..+++.-+..    -.. .|...+.     +....=.|-+|+|+....--||+=.+
T Consensus       103 idiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~----P~W-kPpFIs~-----la~eDRCHLNGlA~~~g~p~yVTa~~  171 (335)
T TIGR03032       103 IDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFV----PLW-KPPFISK-----LAPEDRCHLNGMALDDGEPRYVTALS  171 (335)
T ss_pred             cchhheee-cCCcEEEEECcceeEEEECCCCccc----ccc-CCccccc-----cCccCceeecceeeeCCeEEEEEEee
Confidence            34678999 6779999999989999998863321    110 0111111     01111134569999753337765432


Q ss_pred             CC---EEEEEc-CC-C-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC-CCceee
Q 013321          101 NM---AIRKIS-DT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCSD  173 (445)
Q Consensus       101 N~---rIrkfd-~d-G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~-~~~~~~  173 (445)
                      ..   .=.|=+ .+ | +.-+..+.           .....|..|++--.  -+|+|||+|.+.+.|..++++ |.....
T Consensus       172 ~sD~~~gWR~~~~~gG~vidv~s~e-----------vl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~V  238 (335)
T TIGR03032       172 QSDVADGWREGRRDGGCVIDIPSGE-----------VVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPV  238 (335)
T ss_pred             ccCCcccccccccCCeEEEEeCCCC-----------EEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEE
Confidence            10   001111 11 1 11111100           01123556666543  468999999999999999997 544433


Q ss_pred             cCCCCccceEEEE
Q 013321          174 NYDDTFHLGIFVL  186 (445)
Q Consensus       174 ~~~~g~P~gIav~  186 (445)
                      ..-.|+|.|++..
T Consensus       239 a~vpG~~rGL~f~  251 (335)
T TIGR03032       239 AFLPGFTRGLAFA  251 (335)
T ss_pred             EECCCCCccccee
Confidence            3445677777776

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.81  E-value=19  Score=36.97  Aligned_cols=148  Identities=17%  Similarity=0.252  Sum_probs=79.6

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecC--CCCcccC-CCCCccCccCCCcceEEEcC-CCCEEE
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGS--PEGYYGH-VDGRPRGARMNHPKGLAVDD-RGNIYI   96 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~--~~G~~G~-~dG~~~~a~Ln~P~GIavD~-dG~LYV   96 (445)
                      ..|.+|+.-.+|...++|....+++++..+-.  +++..+...  +-|.... +.|      |   .|+|.|+ ++.|||
T Consensus       129 ~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~--t~~~~~~~~~i~L~~~~k~N~G------f---EGlA~d~~~~~l~~  197 (316)
T COG3204         129 SDPETIEYIGGNQFVIVDERDRALYLFTVDAD--TTVISAKVQKIPLGTTNKKNKG------F---EGLAWDPVDHRLFV  197 (316)
T ss_pred             CChhHeEEecCCEEEEEehhcceEEEEEEcCC--ccEEeccceEEeccccCCCCcC------c---eeeecCCCCceEEE
Confidence            67999999888888889988888888765421  122221110  0011110 111      2   4999998 455888


Q ss_pred             EeCCC-CEEEEEcC--CCcEEEecCcccCCCCCCCCCccCc--ccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321           97 ADTMN-MAIRKISD--TGVTTIAGGKWSRGVGHVDGPSEDA--KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus        97 AD~~N-~rIrkfd~--dGv~tiaGg~~G~g~G~~dgp~~~a--~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      |--.| -+|..++.  +..+.-+.          ..+..+.  -+..-.++.+....++|+|..-..++|..++..++..
T Consensus       198 aKEr~P~~I~~~~~~~~~l~~~~~----------~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~  267 (316)
T COG3204         198 AKERNPIGIFEVTQSPSSLSVHAS----------LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI  267 (316)
T ss_pred             EEccCCcEEEEEecCCcccccccc----------cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee
Confidence            87654 34555541  11111110          1111121  1233344555455667777777777777777766542


Q ss_pred             ee----------cCCCCccceEEEEecc
Q 013321          172 SD----------NYDDTFHLGIFVLVAA  189 (445)
Q Consensus       172 ~~----------~~~~g~P~gIav~~~a  189 (445)
                      ..          .....-+.||+++..+
T Consensus       268 ~~lsL~~g~~gL~~dipqaEGiamDd~g  295 (316)
T COG3204         268 ELLSLTKGNHGLSSDIPQAEGIAMDDDG  295 (316)
T ss_pred             eeEEeccCCCCCcccCCCcceeEECCCC
Confidence            22          2222346788887653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.37  E-value=9.4  Score=40.75  Aligned_cols=113  Identities=20%  Similarity=0.220  Sum_probs=74.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~-v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .-.++++.++|.+.++-+....|+.++...  .+. +.++.|-                -+.-.++++.++|+++++=..
T Consensus       205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~--~~~~~~~l~gH----------------~~~v~~~~f~p~g~~i~Sgs~  266 (456)
T KOG0266|consen  205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKD--DGRNLKTLKGH----------------STYVTSVAFSPDGNLLVSGSD  266 (456)
T ss_pred             ceeeeEECCCCcEEEEecCCceEEEeeccC--CCeEEEEecCC----------------CCceEEEEecCCCCEEEEecC
Confidence            357899999999888888888888888721  122 3444332                223479999999998888777


Q ss_pred             CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321          101 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       101 N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      .+.|+..|..+   +.++.+..        +         .-.+ +....+++++++-...+.|+.++.....
T Consensus       267 D~tvriWd~~~~~~~~~l~~hs--------~---------~is~-~~f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  267 DGTVRIWDVRTGECVRKLKGHS--------D---------GISG-LAFSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             CCcEEEEeccCCeEEEeeeccC--------C---------ceEE-EEECCCCCEEEEcCCCccEEEEECCCCc
Confidence            88888888554   33333221        1         0112 2356677666666667777777777655

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=89.25  E-value=1.6  Score=46.20  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             CCceEEEEcC-C------CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321           21 MEPFSVAVSP-S------GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN   93 (445)
Q Consensus        21 ~~P~gIAVdp-d------G~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~   93 (445)
                      ..|.||++-. +      |.+||+-.+...+.+.++++    ...++....  ..+.  .      --.|.+|++.+||.
T Consensus       314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g----~~~~~~~~f--l~~d--~------~gR~~dV~v~~DGa  379 (399)
T COG2133         314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDG----NYKVVLTGF--LSGD--L------GGRPRDVAVAPDGA  379 (399)
T ss_pred             cccceeEEecCCcCccccCcEEEEeecceeEEEeccCC----CcceEEEEE--EecC--C------CCcccceEECCCCe
Confidence            4578999974 2      68999998888888888874    322222110  1110  0      13789999999999


Q ss_pred             EEEEeCC-CCEEEEEcCCC
Q 013321           94 IYIADTM-NMAIRKISDTG  111 (445)
Q Consensus        94 LYVAD~~-N~rIrkfd~dG  111 (445)
                      |||+|-. +.+|.|+...+
T Consensus       380 llv~~D~~~g~i~Rv~~~~  398 (399)
T COG2133         380 LLVLTDQGDGRILRVSYAG  398 (399)
T ss_pred             EEEeecCCCCeEEEecCCC
Confidence            9998877 77999998654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=88.76  E-value=1.4  Score=36.83  Aligned_cols=42  Identities=26%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCC
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTS   50 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~d   50 (445)
                      +|.....+++|   ...|.||++++++. |||++...+.|.++...
T Consensus        42 d~~~~~~va~g---~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   42 DGKEVKVVASG---FSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             eCCEeEEeecc---CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            45556666653   35699999999755 99999999999988753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=88.59  E-value=0.82  Score=32.29  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=21.0

Q ss_pred             cCCCCCCCceEEEEcCCCcEEEEeCCCC
Q 013321           15 EGSKFGMEPFSVAVSPSGELLVLDSENS   42 (445)
Q Consensus        15 ~Gs~~g~~P~gIAVdpdG~LYVaDs~n~   42 (445)
                      ++......+.+|++|++|+|||+-..++
T Consensus         7 G~~~~~~~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen    7 GGPGAQDYGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             CCCCCceeEEEEEECCCCCEEEEEeecC
Confidence            3333335799999999999999976543

SBBP stands for Seven Bladed Beta Propeller.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.57  E-value=24  Score=37.67  Aligned_cols=126  Identities=20%  Similarity=0.250  Sum_probs=79.5

Q ss_pred             cEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEE-EecCCCCcccCCCCCccCccCCCcceE
Q 013321            8 YTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGL   86 (445)
Q Consensus         8 ~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~-vaG~~~G~~G~~dG~~~~a~Ln~P~GI   86 (445)
                      ..+.++. |...  ..++++++++|+++++-...+.|+.++..+   |++.. +.+..       +         .=.++
T Consensus       237 ~~~~~l~-gH~~--~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs-------~---------~is~~  294 (456)
T KOG0266|consen  237 RNLKTLK-GHST--YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHS-------D---------GISGL  294 (456)
T ss_pred             eEEEEec-CCCC--ceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccC-------C---------ceEEE
Confidence            4444444 3333  458999999999999999899999888763   33322 22211       1         12488


Q ss_pred             EEcCCCCEEEEeCCCCEEEEEcCCC-cE----EEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321           87 AVDDRGNIYIADTMNMAIRKISDTG-VT----TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI  161 (445)
Q Consensus        87 avD~dG~LYVAD~~N~rIrkfd~dG-v~----tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI  161 (445)
                      ++.++|+++++=...+.|+.+|... ..    ++.+..               .-. |...+...+++..+++-..++.|
T Consensus       295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~---------------~~~-~~~~~~fsp~~~~ll~~~~d~~~  358 (456)
T KOG0266|consen  295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE---------------NSA-PVTSVQFSPNGKYLLSASLDRTL  358 (456)
T ss_pred             EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC---------------CCC-ceeEEEECCCCcEEEEecCCCeE
Confidence            9999999777667789999999654 32    221110               011 33334556777777676777777


Q ss_pred             EEEECCCCce
Q 013321          162 REIQLHDDDC  171 (445)
Q Consensus       162 r~i~l~~~~~  171 (445)
                      +..++....+
T Consensus       359 ~~w~l~~~~~  368 (456)
T KOG0266|consen  359 KLWDLRSGKS  368 (456)
T ss_pred             EEEEccCCcc
Confidence            7777665433

>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]

Probab=88.55  E-value=3.6  Score=44.24  Aligned_cols=129  Identities=15%  Similarity=0.098  Sum_probs=82.3

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .-|+|..+|.+|+.+++|-.-|.+.++.+.   .+.+.+..|.. ..+|.     ..+-|..|..++|..+|.|+|+|..
T Consensus       168 qvhyg~t~df~~~~d~TgV~mH~t~kp~pk---la~~~L~l~~~-tvp~~-----~~~~f~~~tsc~v~~n~~ihvfa~r  238 (501)
T KOG3567|consen  168 QVHYGLTIDFDGNYDVTGVGMHQTEKPQPK---LAKTMLLLGDG-TVPGE-----GTKHFETPTSCAVEENGPIHVFAYR  238 (501)
T ss_pred             EeccccccCCCCCcccccceeeeeccCCch---hhceEEeecCC-ccCCC-----CccccCCCceEEEecCcceeeEEee
Confidence            458999999999999999999999998876   24555555542 11221     1235888999999999999999987


Q ss_pred             -CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEE-EECCCCeEEEEECCCCeEEEEECC
Q 013321          101 -NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV-YVGSSCSLLVIDRGNQAIREIQLH  167 (445)
Q Consensus       101 -N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~-~vd~dG~LyVaD~gn~rIr~i~l~  167 (445)
                       |-+|..++..|-....- ..|  -...-+..      .|...- +.+-...+=|+|..+.|++.+...
T Consensus       239 ~hTh~Lgk~vsG~lv~q~-~~g--~w~~ig~r------~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s  298 (501)
T KOG3567|consen  239 CHTHILGKVVSGYLVAQK-HEG--HWTLIGRR------DPQLPQLFEPVNHIVCVADGDNQRVRCFFQS  298 (501)
T ss_pred             eeehhhcceeeeeEeeec-cCc--ceeecccc------CCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence             66777777666332110 000  01111111      122111 123333667889999999999755

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=88.27  E-value=32  Score=37.78  Aligned_cols=112  Identities=24%  Similarity=0.267  Sum_probs=63.8

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ++-.+++.+..|+|+.+.. ...+++++..+.             ++....    ....=.+|.|+|+.++|.+.|+=..
T Consensus       364 nqI~~~~~~~~~~~~t~g~-Dd~l~~~~~~~~-------------~~t~~~----~~~lg~QP~~lav~~d~~~avv~~~  425 (603)
T KOG0318|consen  364 NQIKGMAASESGELFTIGW-DDTLRVISLKDN-------------GYTKSE----VVKLGSQPKGLAVLSDGGTAVVACI  425 (603)
T ss_pred             ceEEEEeecCCCcEEEEec-CCeEEEEecccC-------------cccccc----eeecCCCceeEEEcCCCCEEEEEec
Confidence            4455666666666665543 345666654321             121110    0011248999999999864443333


Q ss_pred             CCEEEEEc-CCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321          101 NMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       101 N~rIrkfd-~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      .+ |..+. ..+++++..+                  ..+.+++ +.++++..++-...+.|+.+++.+..
T Consensus       426 ~~-iv~l~~~~~~~~~~~~------------------y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~  476 (603)
T KOG0318|consen  426 SD-IVLLQDQTKVSSIPIG------------------YESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDE  476 (603)
T ss_pred             Cc-EEEEecCCcceeeccc------------------cccceEE-EcCCCCEEEEecccceEEEEEecCCc
Confidence            33 44444 4556665321                  1344554 68888888777777889999988754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.52  E-value=6.6  Score=39.50  Aligned_cols=72  Identities=11%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             CceEEEEcCCCcEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           22 EPFSVAVSPSGELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~--n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      .-.|+.+..+|.||.+-..  .++|++++..+   |++....--+...              .-.||++-. +.||..-+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~~~~~~~l~~~~--------------FgEGit~~~-d~l~qLTW  107 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GKVLQSVPLPPRY--------------FGEGITILG-DKLYQLTW  107 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SSEEEEEE-TTT----------------EEEEEEET-TEEEEEES
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCC---CcEEEEEECCccc--------------cceeEEEEC-CEEEEEEe
Confidence            3568999778999999864  46899999884   5554433332222              334999984 57999999


Q ss_pred             CCCEEEEEcCCC
Q 013321          100 MNMAIRKISDTG  111 (445)
Q Consensus       100 ~N~rIrkfd~dG  111 (445)
                      .++...++|.+.
T Consensus       108 k~~~~f~yd~~t  119 (264)
T PF05096_consen  108 KEGTGFVYDPNT  119 (264)
T ss_dssp             SSSEEEEEETTT
T ss_pred             cCCeEEEEcccc
Confidence            999999999876

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=86.35  E-value=25  Score=31.72  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      ..++++++++.++++...++.|..++...   ++.......               .-.....+++++++.++++-..++
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          96 VSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCLTTLRG---------------HTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCC---cEEEEEecc---------------CCCcEEEEEEcCcCCEEEEEcCCC
Confidence            45666666666666665566666666541   111111110               112456888998877777666577


Q ss_pred             EEEEEcCC
Q 013321          103 AIRKISDT  110 (445)
Q Consensus       103 rIrkfd~d  110 (445)
                      .|+.+|..
T Consensus       158 ~i~i~d~~  165 (289)
T cd00200         158 TIKLWDLR  165 (289)
T ss_pred             cEEEEEcc
Confidence            88888854

>PRK02888 nitrous-oxide reductase; Validated

Probab=85.80  E-value=10  Score=42.56  Aligned_cols=82  Identities=9%  Similarity=0.115  Sum_probs=53.2

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCCcE-EEecCcccCCCCCCCCCccCccc-CCCceEEEECCCCeEEEEECC
Q 013321           81 NHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVT-TIAGGKWSRGVGHVDGPSEDAKF-SNDFDVVYVGSSCSLLVIDRG  157 (445)
Q Consensus        81 n~P~GIavD~dG~-LYVAD~~N~rIrkfd~dGv~-tiaGg~~G~g~G~~dgp~~~a~f-~~P~gI~~vd~dG~LyVaD~g  157 (445)
                      +.|+||+++|||. +||+......|.+||..... .+++...     ..+.-..+..+ ..|.... .|.+|+.|++=.-
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~-----~~~~vvaevevGlGPLHTa-FDg~G~aytslf~  394 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK-----PRDAVVAEPELGLGPLHTA-FDGRGNAYTTLFL  394 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC-----ccceEEEeeccCCCcceEE-ECCCCCEEEeEee
Confidence            6899999999999 88999889999999965422 1111100     00000001111 3566666 4888889888777


Q ss_pred             CCeEEEEECCC
Q 013321          158 NQAIREIQLHD  168 (445)
Q Consensus       158 n~rIr~i~l~~  168 (445)
                      ...|.+.+++.
T Consensus       395 dsqv~kwn~~~  405 (635)
T PRK02888        395 DSQIVKWNIEA  405 (635)
T ss_pred             cceeEEEehHH
Confidence            77888888765

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=85.68  E-value=44  Score=33.96  Aligned_cols=73  Identities=23%  Similarity=0.351  Sum_probs=48.2

Q ss_pred             ccCCCcceEEEcCCCCEEEEeCCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEE---CCCCeE
Q 013321           78 ARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSCSL  151 (445)
Q Consensus        78 a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd-~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~v---d~dG~L  151 (445)
                      ...-+.++|..+++|+++|+=...+.|.+|+ .+|  +..+ +|+.+.  ....   ....|.+-++.-++   +.++.|
T Consensus       141 ~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l-gG~~~~--df~~---~~~~f~~QHdar~~~~~~~~~~I  214 (299)
T PF14269_consen  141 WDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL-GGKRNS--DFTL---PATNFSWQHDARFLNESNDDGTI  214 (299)
T ss_pred             CCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe-CCCCCC--cccc---cCCcEeeccCCEEeccCCCCCEE
Confidence            3456778999999999999999999999999 667  3343 444221  1111   34456666666544   355677


Q ss_pred             EEEEC
Q 013321          152 LVIDR  156 (445)
Q Consensus       152 yVaD~  156 (445)
                      .|.|-
T Consensus       215 slFDN  219 (299)
T PF14269_consen  215 SLFDN  219 (299)
T ss_pred             EEEcC
Confidence            77775

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=85.18  E-value=13  Score=36.68  Aligned_cols=114  Identities=14%  Similarity=0.278  Sum_probs=57.7

Q ss_pred             EEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-----CccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           25 SVAVSPSGELLVLDSENSNIYKISTSLSPY-----SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        25 gIAVdpdG~LYVaDs~n~rI~kid~dg~~~-----G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      .|+++++|-||..+. ++.|+|........     +..+.+.+.               ..+...-|.++++|.||+.+.
T Consensus        85 ~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~~---------------GW~~f~~vfa~~~GvLY~i~~  148 (229)
T PF14517_consen   85 FIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGGT---------------GWNDFDAVFAGPNGVLYAITP  148 (229)
T ss_dssp             EEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE-S---------------SGGGEEEEEE-TTS-EEEEET
T ss_pred             EEEecCCccEEEecc-ccceeeccCCCccCcchhhccceecccC---------------CCccceEEEeCCCccEEEEcC
Confidence            799999999998876 67888876542210     011222111               244567899999999999996


Q ss_pred             CCCEEEEEc-CCC-------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          100 MNMAIRKIS-DTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       100 ~N~rIrkfd-~dG-------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      . .++.+.. +++       .+.+.++     .+          +..+.-| ...++|.||.+ ..++.|++-......|
T Consensus       149 d-g~~~~~~~p~~~~~~W~~~s~~v~~-----~g----------w~~~~~i-~~~~~g~L~~V-~~~G~lyr~~~p~~~~  210 (229)
T PF14517_consen  149 D-GRLYRRYRPDGGSDRWLSGSGLVGG-----GG----------WDSFHFI-FFSPDGNLWAV-KSNGKLYRGRPPQNGC  210 (229)
T ss_dssp             T-E-EEEE---SSTT--HHHH-EEEES-----SS----------GGGEEEE-EE-TTS-EEEE--ETTEEEEES---STT
T ss_pred             C-CceEEeCCCCCCCCccccccceecc-----CC----------cccceEE-eeCCCCcEEEE-ecCCEEeccCCcccCC
Confidence            5 4777663 222       1222111     11          1223334 46889999999 4578898887665444


Q ss_pred             e
Q 013321          172 S  172 (445)
Q Consensus       172 ~  172 (445)
                      .
T Consensus       211 ~  211 (229)
T PF14517_consen  211 P  211 (229)
T ss_dssp             -
T ss_pred             c
Confidence            3

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=85.16  E-value=0.73  Score=32.53  Aligned_cols=21  Identities=43%  Similarity=0.749  Sum_probs=17.6

Q ss_pred             CCcceEEEcCCCCEEEEeCCC
Q 013321           81 NHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        81 n~P~GIavD~dG~LYVAD~~N  101 (445)
                      ..+.+|++|++|+|||+=..+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeec
Confidence            468999999999999985543

SBBP stands for Seven Bladed Beta Propeller.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=85.15  E-value=18  Score=40.10  Aligned_cols=80  Identities=20%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             CccCCCcceEEEcC-CCCEEEEeCCCC----------------EEEEEcCC-C----------cEEEecCcccCCCCCCC
Q 013321           77 GARMNHPKGLAVDD-RGNIYIADTMNM----------------AIRKISDT-G----------VTTIAGGKWSRGVGHVD  128 (445)
Q Consensus        77 ~a~Ln~P~GIavD~-dG~LYVAD~~N~----------------rIrkfd~d-G----------v~tiaGg~~G~g~G~~d  128 (445)
                      ...|..|.+|++.+ .|.+|++.+.|.                .|.++-+. +          ++..+|.......+. .
T Consensus       413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~-~  491 (616)
T COG3211         413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA-S  491 (616)
T ss_pred             CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc-c
Confidence            45799999999998 677999999876                35555421 1          233333222111111 1


Q ss_pred             CCccCcccCCCceEEEECCCCeEEEEECCC
Q 013321          129 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  158 (445)
Q Consensus       129 gp~~~a~f~~P~gI~~vd~dG~LyVaD~gn  158 (445)
                      ..-...-|..|-+|+ +|+.|+|||+.-++
T Consensus       492 ~~~~~~~f~~PDnl~-fD~~GrLWi~TDg~  520 (616)
T COG3211         492 ANINANWFNSPDNLA-FDPWGRLWIQTDGS  520 (616)
T ss_pred             cCcccccccCCCceE-ECCCCCEEEEecCC
Confidence            112225688999996 79999999987553

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=84.95  E-value=27  Score=35.88  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      -.+|+++|-++.|++-+....|+.+|....             .+.|.       -.+..+--+|+||+|.||.+=.++.
T Consensus       103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-------------~cqg~-------l~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen  103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-------------KCQGL-------LNLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEEEEecCCCCeEEecccCCeEEeeEecCC-------------CCceE-------EecCCCcceeECCCCcEEEEecCCC
Confidence            457777776677777776667776665410             11110       1234556789999999988877777


Q ss_pred             EEEEEc
Q 013321          103 AIRKIS  108 (445)
Q Consensus       103 rIrkfd  108 (445)
                      .|..+|
T Consensus       163 ~IkLyD  168 (311)
T KOG1446|consen  163 LIKLYD  168 (311)
T ss_pred             eEEEEE
Confidence            999998

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=84.87  E-value=28  Score=39.81  Aligned_cols=124  Identities=22%  Similarity=0.253  Sum_probs=73.6

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-----------CCc---ccCCCCCccCc---------
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-----------EGY---YGHVDGRPRGA---------   78 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~-----------~G~---~G~~dG~~~~a---------   78 (445)
                      .-..++.+|||.+.++....+.|.+++...+   ...+....+           .|.   +-..||..+..         
T Consensus       352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR  428 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR  428 (893)
T ss_pred             ceeeEEECCCCcEEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence            4578999999999999988888888876532   111111111           011   11234543322         


Q ss_pred             cCCCcc-----eEEEcCCCCEEEEeC-CCCEEEEEcC-CC-c-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC
Q 013321           79 RMNHPK-----GLAVDDRGNIYIADT-MNMAIRKISD-TG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC  149 (445)
Q Consensus        79 ~Ln~P~-----GIavD~dG~LYVAD~-~N~rIrkfd~-dG-v-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG  149 (445)
                      .|..|.     .||+|+.|.|.+|=. .+..|.+.+. .| . -++.| ..                 .|..-++.++.+
T Consensus       429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HE-----------------gPVs~l~f~~~~  490 (893)
T KOG0291|consen  429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HE-----------------GPVSGLSFSPDG  490 (893)
T ss_pred             eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CC-----------------CcceeeEEcccc
Confidence            233443     899999998666544 4567888883 45 2 33333 21                 122212357888


Q ss_pred             eEEEEECCCCeEEEEEC
Q 013321          150 SLLVIDRGNQAIREIQL  166 (445)
Q Consensus       150 ~LyVaD~gn~rIr~i~l  166 (445)
                      ++++.-.....|++.+.
T Consensus       491 ~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  491 SLLASGSWDKTVRIWDI  507 (893)
T ss_pred             CeEEeccccceEEEEEe
Confidence            88888888888887774

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=84.79  E-value=47  Score=33.50  Aligned_cols=115  Identities=13%  Similarity=0.081  Sum_probs=66.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      .-.||++-. +.||..-..++...+++.+.  ...+..+.-..                 .--|||.| ...||++|. +
T Consensus        91 FgEGit~~~-d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~-----------------EGWGLt~d-g~~Li~SDG-S  148 (264)
T PF05096_consen   91 FGEGITILG-DKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG-----------------EGWGLTSD-GKRLIMSDG-S  148 (264)
T ss_dssp             -EEEEEEET-TEEEEEESSSSEEEEEETTT--TEEEEEEE-SS-----------------S--EEEEC-SSCEEEE-S-S
T ss_pred             cceeEEEEC-CEEEEEEecCCeEEEEcccc--ceEEEEEecCC-----------------cceEEEcC-CCEEEEECC-c
Confidence            357888875 58999999999999999863  11222221111                 22399976 346999996 7


Q ss_pred             CEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 013321          102 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  172 (445)
Q Consensus       102 ~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~  172 (445)
                      .+|+.+|+..   +.++.-...|.            ....-+.+=++  +|.||.-=-..++|.+|++..+.+.
T Consensus       149 ~~L~~~dP~~f~~~~~i~V~~~g~------------pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~  208 (264)
T PF05096_consen  149 SRLYFLDPETFKEVRTIQVTDNGR------------PVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVV  208 (264)
T ss_dssp             SEEEEE-TTT-SEEEEEE-EETTE------------E---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEE
T ss_pred             cceEEECCcccceEEEEEEEECCE------------ECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEE
Confidence            8999999765   22222111110            11122334444  5777777677888888888775554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=84.34  E-value=3.1  Score=42.91  Aligned_cols=55  Identities=25%  Similarity=0.337  Sum_probs=41.7

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEE
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA   97 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA   97 (445)
                      ..|++... .+|.|||+|++.+.|.+++++.   |+...++--+    |            .|.||++.  |++.|+
T Consensus       203 smPhSPRW-hdgrLwvldsgtGev~~vD~~~---G~~e~Va~vp----G------------~~rGL~f~--G~llvV  257 (335)
T TIGR03032       203 SMPHSPRW-YQGKLWLLNSGRGELGYVDPQA---GKFQPVAFLP----G------------FTRGLAFA--GDFAFV  257 (335)
T ss_pred             cCCcCCcE-eCCeEEEEECCCCEEEEEcCCC---CcEEEEEECC----C------------CCccccee--CCEEEE
Confidence            45666666 3789999999999999999873   6777776543    1            57799998  776665

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=84.25  E-value=38  Score=34.79  Aligned_cols=120  Identities=13%  Similarity=0.056  Sum_probs=71.8

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      .+--+|+||+|-|+++-.++..|..+|...-..|=..++. -       .+     .....=++|-+.++|...+.-+.+
T Consensus       142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i-------~~-----~~~~ew~~l~FS~dGK~iLlsT~~  208 (311)
T KOG1446|consen  142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-I-------TD-----NDEAEWTDLEFSPDGKSILLSTNA  208 (311)
T ss_pred             CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-c-------CC-----CCccceeeeEEcCCCCEEEEEeCC
Confidence            3456799999988888877778888876411001111111 0       01     123344589999999966666667


Q ss_pred             CEEEEEcC-CC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321          102 MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       102 ~rIrkfd~-dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      +-|..+|. +|  ..++.+-..              ....|-+ ++..+++..++.-.++++|....++..
T Consensus       209 s~~~~lDAf~G~~~~tfs~~~~--------------~~~~~~~-a~ftPds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  209 SFIYLLDAFDGTVKSTFSGYPN--------------AGNLPLS-ATFTPDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             CcEEEEEccCCcEeeeEeeccC--------------CCCccee-EEECCCCcEEEEecCCCcEEEEEcCCC
Confidence            88888883 66  334332111              1112222 345677877777777888888887553

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=83.06  E-value=35  Score=30.73  Aligned_cols=111  Identities=16%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N  101 (445)
                      ...+++++++.++++...++.|..++...   ++.......               .-.....+++.++|. |+++.. +
T Consensus       138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~-~  198 (289)
T cd00200         138 VNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCVATLTG---------------HTGEVNSVAFSPDGEKLLSSSS-D  198 (289)
T ss_pred             EEEEEEcCcCCEEEEEcCCCcEEEEEccc---cccceeEec---------------CccccceEEECCCcCEEEEecC-C
Confidence            56666666666555555456666666541   111111100               011356888999885 555554 7


Q ss_pred             CEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          102 MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       102 ~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      +.|+.+|... .......      +         .-.....+. ..+++.++++...++.|+.++...
T Consensus       199 ~~i~i~d~~~~~~~~~~~------~---------~~~~i~~~~-~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLR------G---------HENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             CcEEEEECCCCceecchh------h---------cCCceEEEE-EcCCCcEEEEEcCCCcEEEEEcCC
Confidence            8888888653 2111100      0         001233444 455566777666677888887664

>PRK02888 nitrous-oxide reductase; Validated

Probab=81.81  E-value=5  Score=44.89  Aligned_cols=78  Identities=23%  Similarity=0.262  Sum_probs=54.2

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCC---CCc---cEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSP---YSR---PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG   92 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~---~G~---v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG   92 (445)
                      +.+|+||+++|||. +||+.-..+.|-+|+...-.   .++   -.++++...             -=..|...++|.+|
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-------------vGlGPLHTaFDg~G  386 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-------------LGLGPLHTAFDGRG  386 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-------------cCCCcceEEECCCC
Confidence            48999999999998 78888778889999865210   000   011222210             01368899999999


Q ss_pred             CEEEEeCCCCEEEEEcCC
Q 013321           93 NIYIADTMNMAIRKISDT  110 (445)
Q Consensus        93 ~LYVAD~~N~rIrkfd~d  110 (445)
                      +.|++=.....|.+.|-+
T Consensus       387 ~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        387 NAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             CEEEeEeecceeEEEehH
Confidence            999887777788888843

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=81.21  E-value=51  Score=33.79  Aligned_cols=70  Identities=19%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEE
Q 013321           28 VSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI  107 (445)
Q Consensus        28 VdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkf  107 (445)
                      +..+|.+|+. ..+++|..+++++   +++... ...   .+      ....++.|..++   +|.|||.+... .+..+
T Consensus        65 ~~~dg~v~~~-~~~G~i~A~d~~~---g~~~W~-~~~---~~------~~~~~~~~~~~~---~G~i~~g~~~g-~~y~l  126 (370)
T COG1520          65 ADGDGTVYVG-TRDGNIFALNPDT---GLVKWS-YPL---LG------AVAQLSGPILGS---DGKIYVGSWDG-KLYAL  126 (370)
T ss_pred             EeeCCeEEEe-cCCCcEEEEeCCC---CcEEec-ccC---cC------cceeccCceEEe---CCeEEEecccc-eEEEE
Confidence            6668888887 4456888888874   222210 000   00      112355555544   89999999854 89999


Q ss_pred             cC-CCcEEE
Q 013321          108 SD-TGVTTI  115 (445)
Q Consensus       108 d~-dGv~ti  115 (445)
                      |. +|....
T Consensus       127 d~~~G~~~W  135 (370)
T COG1520         127 DASTGTLVW  135 (370)
T ss_pred             ECCCCcEEE
Confidence            98 785444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=80.53  E-value=44  Score=36.77  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=67.5

Q ss_pred             CCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEE
Q 013321           18 KFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA   97 (445)
Q Consensus        18 ~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA   97 (445)
                      +.+.+|.++|+.++|.+.|+-... .|..+...    +.+..+-                 --..|.++|+.+++.....
T Consensus       403 ~lg~QP~~lav~~d~~~avv~~~~-~iv~l~~~----~~~~~~~-----------------~~y~~s~vAv~~~~~~vaV  460 (603)
T KOG0318|consen  403 KLGSQPKGLAVLSDGGTAVVACIS-DIVLLQDQ----TKVSSIP-----------------IGYESSAVAVSPDGSEVAV  460 (603)
T ss_pred             ecCCCceeEEEcCCCCEEEEEecC-cEEEEecC----Ccceeec-----------------cccccceEEEcCCCCEEEE
Confidence            456899999999987654443223 34444322    1111110                 1126889999999987776


Q ss_pred             eCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321           98 DTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus        98 D~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      =....+|+.+.-.|-.......            ....-..+++|.+ .+++..+++---++.|..++......
T Consensus       461 GG~Dgkvhvysl~g~~l~ee~~------------~~~h~a~iT~vay-Spd~~yla~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  461 GGQDGKVHVYSLSGDELKEEAK------------LLEHRAAITDVAY-SPDGAYLAAGDASRKVVLYDVASREV  521 (603)
T ss_pred             ecccceEEEEEecCCcccceee------------eecccCCceEEEE-CCCCcEEEEeccCCcEEEEEcccCce
Confidence            6666777777755521111000            0011123456664 66666555555577888888765443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=80.18  E-value=15  Score=38.83  Aligned_cols=79  Identities=20%  Similarity=0.351  Sum_probs=50.5

Q ss_pred             CCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEec-CCCCcccCCCCCccCccCCCcceEEEc--C--CCC
Q 013321           20 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVD--D--RGN   93 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG-~~~G~~G~~dG~~~~a~Ln~P~GIavD--~--dG~   93 (445)
                      ..+|.|+++|. .|.|||++. +.-|+++..+-........++. ...+.            ..-..||++-  .  .|-
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l------------~aDvEGlaly~~~~g~gY  273 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGL------------VADVEGLALYYGSDGKGY  273 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EEEEEEEE-CCC-EE
T ss_pred             CCcceEEEEecccCCEEEecC-ccEEEEEecCCCCCCcceeeeccccccc------------ccCccceEEEecCCCCeE
Confidence            36899999998 789999995 5789999876322111222221 11011            1234588884  3  345


Q ss_pred             EEEEeCCCCEEEEEcCCC
Q 013321           94 IYIADTMNMAIRKISDTG  111 (445)
Q Consensus        94 LYVAD~~N~rIrkfd~dG  111 (445)
                      |+|++.+++...+|+..+
T Consensus       274 LivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  274 LIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEEGGGTEEEEEESST
T ss_pred             EEEEcCCCCeEEEEecCC
Confidence            999999999999999765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	4e-36
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	8e-07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	2e-04
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	7e-36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	4e-18
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	1e-17
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	4e-17
3kya_A	496	Putative phosphatase; structural genomics, joint c	8e-28
3kya_A	496	Putative phosphatase; structural genomics, joint c	1e-16
3kya_A	496	Putative phosphatase; structural genomics, joint c	5e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	8e-18
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-15
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	7e-12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	7e-12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	7e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	9e-13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	8e-06
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-12
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-11
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-09
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	4e-08
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	8e-11
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	3e-10
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	3e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2p4o_A	306	Hypothetical protein; putative lactonase, structur	5e-05

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  137 bits (345), Expect = 4e-36
 Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 15/182 (8%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELL-VLDSENSNIYKISTSLS--PYSRP 57
           + +++      T     +     F +   PSG    ++      I +          + P
Sbjct: 250 VFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTP 309

Query: 58  KLVAGSPEGYYGHVDGRPRGARMNHPKGLA---------VDDRGNIYIADTMNMAIRKIS 108
            +V G   G    VDG  + ARM+ P+              D  + Y  D  N  IR ++
Sbjct: 310 YIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368

Query: 109 DTG-VTTIAGGKWSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 166
             G VTT AG   +   G+ DG   ++A+F++   +VY        + DR N+ IR+I  
Sbjct: 369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428

Query: 167 HD 168
            +
Sbjct: 429 EE 430

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 30/166 (18%)

Query: 5   EGGYTVETVFEGSKFGMEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGS 63
           EGG     +  G  FG +   + V+  G +  V+ ++  ++Y +                
Sbjct: 27  EGGLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVV--------------- 71

Query: 64  PEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRG 123
                      P  A     K   ++D G        N          VTT  G  +   
Sbjct: 72  -----------PAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGN 120

Query: 124 --VGHVDGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 166
                 DGP  +   F     + +   + + L +       R I  
Sbjct: 121 TKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDF 166

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 18/174 (10%), Positives = 35/174 (20%), Gaps = 47/174 (27%)

Query: 23  PFSVAVSPSGE-LLVLDSENSNIYKI-------STSLSPYSRPKLVAGSPEG-------- 66
              ++  P     L L  E      I       ST  S  S+ + +  + E         
Sbjct: 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITND 198

Query: 67  -------------YYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG- 111
                                    +  +  G       G +Y        + +   T  
Sbjct: 199 QNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258

Query: 112 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
             T +                       +F + +  S     ++      I   
Sbjct: 259 ETTPLFTI---------------QDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score =  135 bits (342), Expect = 7e-36
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 11/145 (7%)

Query: 23  PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH 82
           P+ +         + D   S++YKI+         +   GS        DG    A    
Sbjct: 270 PYLIYYFVDSNFYMSDQNLSSVYKITPD----GECEWFCGSA-TQKTVQDGLREEALFAQ 324

Query: 83  PKGLAVDDRGNIYIADTM-NMAIRKI--SDTGVTTIAGGKWSRGVGHVDGPSEDAKFSND 139
           P G+ VD+ GN YI D      +RK+   D  V+T+A G+       +DG   +A F+  
Sbjct: 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA-GQVDVA-SQIDGTPLEATFNYP 382

Query: 140 FDVVYVGSSCSLLVIDRGNQAIREI 164
           +D+          + +   +AIR+ 
Sbjct: 383 YDIC-YDGEGGYWIAEAWGKAIRKY 406

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 85.0 bits (210), Expect = 4e-18
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 22  EPFSVAVSPSGELLVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARM 80
           +P  + V   G   ++D  +   + K+       S    VAG        +DG P  A  
Sbjct: 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS---TVAGQV-DVASQIDGTPLEATF 379

Query: 81  NHPKGLAVDDRGNIYIADTMNMAIRKIS 108
           N+P  +  D  G  +IA+    AIRK +
Sbjct: 380 NYPYDICYDGEGGYWIAEAWGKAIRKYA 407

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 83.5 bits (206), Expect = 1e-17
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 16  GSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRP 75
           GS F  +  +VA+  + E L     N N  + +      +   L+           +   
Sbjct: 214 GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQL--------ELSG 262

Query: 76  RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDA 134
                  P  +      N Y++D    ++ KI+  G      G    +     DG  E+A
Sbjct: 263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQK--TVQDGLREEA 320

Query: 135 KFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHDDDCS 172
            F+    +  V    +  ++D      +R++ + D   S
Sbjct: 321 LFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGYVS 358

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 30/166 (18%)

Query: 5   EGGYTVETVFEGSKFGMEPFSVAVSPSG-----ELLVLDSENSNIYKISTSLSPYSRPKL 59
           EG    + + +GS FG +   V V            V+  +N+ +Y ++    P      
Sbjct: 27  EGKLREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIK 86

Query: 60  V------------------------AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY 95
           V                        +GS     G+ DG    A+  +  G+A      + 
Sbjct: 87  VIVDGKEVTTDGTFKYEQAQNVSTISGSA-SKDGNDDGDLASAKFKYMWGIAAVGNNTVL 145

Query: 96  IADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 141
                +  +R IS             +G        +   +S  ++
Sbjct: 146 AYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE 191

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score =  114 bits (286), Expect = 8e-28
 Identities = 37/180 (20%), Positives = 58/180 (32%), Gaps = 20/180 (11%)

Query: 6   GGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKIS--TSLSPYSRPKLVAG 62
                             F + + P+G+        N    +         +  P    G
Sbjct: 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVG 354

Query: 63  SPEGYYGHVDGRPRGARMNHP--------KGLAVDDRGNIYIADTMNMAIRKISDTG-VT 113
                 G+ D     ARMN+P             ++  + Y  D +N  +RK++  G V+
Sbjct: 355 GY-KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVS 413

Query: 114 TIAGGKWSRG------VGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 166
           T AG   S         G  DG   E A+F +   +VY        V D+    IR I +
Sbjct: 414 TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 80.7 bits (198), Expect = 1e-16
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 21  MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE-------GYYGHVDG 73
           ++          +   +D  N  + K++            AG            +G  DG
Sbjct: 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTPE----GIVSTYAGRGASTSLADGNQWGTDDG 435

Query: 74  RPRG-ARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPS 131
             R  AR     GL  DD     Y+ D +   IR IS      +AG +        + P 
Sbjct: 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE--------NIPE 487

Query: 132 EDAKFSND 139
           +++   ++
Sbjct: 488 DESTVESN 495

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 47.6 bits (112), Expect = 5e-06
 Identities = 17/172 (9%), Positives = 34/172 (19%), Gaps = 10/172 (5%)

Query: 2   IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK--L 59
           I  +    + +    +                    D     I  I         P   +
Sbjct: 167 IDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI 225

Query: 60  VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADTMNMAIRKIS-DTGVTTIAG 117
           +  + +G +         A      G  +    G +Y        + ++       TI  
Sbjct: 226 IKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN 285

Query: 118 G-----KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
           G                    A  S +F +    +          N      
Sbjct: 286 GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS 337

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 82.3 bits (204), Expect = 8e-18
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 41/178 (23%)

Query: 3   KFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAG 62
           K   G   +TV   +    +P  VAV  SG + V D++N+ + K+               
Sbjct: 133 KLAAGSKTQTVLPFTGLN-DPDGVAVDNSGNVYVTDTDNNRVVKLE-------------- 177

Query: 63  SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI-SDTGVTTIAGGKWS 121
             E     V        +  P G+AVD+ G +Y+ +     + K+ + +  +T+      
Sbjct: 178 -AESNNQVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF--- 230

Query: 122 RGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF 179
                ++ P            V V S  ++ V DRGN  + ++        +++    
Sbjct: 231 ---TGLNTPLA----------VAVDSDRTVYVADRGNDRVVKL-----TSLEHHHHHH 270

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 37/164 (22%)

Query: 2   IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA 61
           +K   G T  TV   +    +P  +AV  +G + V D  N  +   + S +    P    
Sbjct: 49  VKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP---- 103

Query: 62  GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKW 120
                             +N+P+GLAVD +G +Y+AD  N  + K++  +   T+     
Sbjct: 104 ---------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-- 146

Query: 121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
                           ++   V  V +S ++ V D  N  + ++
Sbjct: 147 -------------TGLNDPDGVA-VDNSGNVYVTDTDNNRVVKL 176

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 36/159 (22%)

Query: 7   GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSN-IYKISTSLSPYSRPKLVAGSPE 65
           G TV   F G  F + P  VAV  +G + V        + K++T                
Sbjct: 11  GQTVLP-FTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATG--------------- 54

Query: 66  GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVG 125
                         +  P+GLAVD  G +Y+ D  N  +   + +   T+          
Sbjct: 55  ---STGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF------- 104

Query: 126 HVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
                      +    +  V +  ++ V DRGN  + ++
Sbjct: 105 --------DGLNYPEGLA-VDTQGAVYVADRGNNRVVKL 134

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 35/157 (22%)

Query: 9   TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY 68
                ++    G  P  + +     L   +++N++I +I+ +                  
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT------------------ 175

Query: 69  GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHV 127
           G ++  P       P G+   + G ++  + M   I +I+ TG ++              
Sbjct: 176 GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIP------TPN 229

Query: 128 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
             P            +  G +  +   + G   I  I
Sbjct: 230 ARPHA----------ITAGKNSEIWFTEWGANQIGRI 256

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 35/154 (22%)

Query: 12  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 71
             FE      +   + VS  G++   ++  + I K+S                    G  
Sbjct: 53  KEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK------------------GGF 94

Query: 72  DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGP 130
              P     + P G+     G+I+        I K++ D  +                  
Sbjct: 95  TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL------------- 141

Query: 131 SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
               K S    +  +GS  +L   +  N +I  I
Sbjct: 142 --PNKGSYPAFIT-LGSDNALWFTENQNNSIGRI 172

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 18/143 (12%), Positives = 36/143 (25%), Gaps = 35/143 (24%)

Query: 23  PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH 82
           P+ +  S  G++     + + I  +  S                  G +           
Sbjct: 22  PYGITSSEDGKVWFTQHKANKISSLDQS------------------GRIKEFEVPTPDAK 63

Query: 83  PKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 141
              L V   G+I+  +     I K+S   G T                       S  + 
Sbjct: 64  VMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLP---------------QPDSGPYG 108

Query: 142 VVYVGSSCSLLVIDRGNQAIREI 164
           +   G +  +         I ++
Sbjct: 109 IT-EGLNGDIWFTQLNGDRIGKL 130

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 17/157 (10%), Positives = 46/157 (29%), Gaps = 35/157 (22%)

Query: 9   TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY 68
              T +   +    P+ +    +G++         I K++                    
Sbjct: 92  GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD------------------ 133

Query: 69  GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHV 127
           G +       + ++P  + +     ++  +  N +I +I++TG +             + 
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLP------TNA 187

Query: 128 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
             P            +  G+  +L  ++     I  I
Sbjct: 188 AAPVG----------ITSGNDGALWFVEIMGNKIGRI 214

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 11/103 (10%), Positives = 26/103 (25%), Gaps = 18/103 (17%)

Query: 12  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 71
             +        P  +     G L  ++   + I +I+T+                  G +
Sbjct: 179 EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT------------------GEI 220

Query: 72  DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTT 114
                      P  +       I+  +     I +I++     
Sbjct: 221 SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQ 263

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 33/142 (23%)

Query: 23  PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH 82
           P+ + VS  G++ +   + + I  I+                    G +   P       
Sbjct: 17  PYGITVSDKGKVWITQHKANMISCINLD------------------GKITEYPLPTPDAK 58

Query: 83  PKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV 142
              L +   G ++  +     I +I+  G+                 P+     S  + +
Sbjct: 59  VMCLTISSDGEVWFTENAANKIGRITKKGIIKE-----------YTLPNP---DSAPYGI 104

Query: 143 VYVGSSCSLLVIDRGNQAIREI 164
              G +  +   +     I  I
Sbjct: 105 T-EGPNGDIWFTEMNGNRIGRI 125

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 19/154 (12%), Positives = 44/154 (28%), Gaps = 35/154 (22%)

Query: 12  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 71
             +E    G  P  + +     L   +++N+ I +I+ S                  G +
Sbjct: 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITES------------------GDI 173

Query: 72  DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGP 130
                    + P G+   +   ++  + +   I +I+ +G +T                 
Sbjct: 174 TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIP---TPNARPHA- 229

Query: 131 SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
                       +  G+   L   + G   I  +
Sbjct: 230 ------------ITAGAGIDLWFTEWGANKIGRL 251

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 35/154 (22%)

Query: 12  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 71
           T +       +   + +S  GE+   ++  + I +I+                    G +
Sbjct: 48  TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK------------------GII 89

Query: 72  DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGP 130
                    + P G+     G+I+  +     I +I+D G +                  
Sbjct: 90  KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELP------------ 137

Query: 131 SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
               K S    +  +GS  +L   +  N AI  I
Sbjct: 138 ---NKGSYPSFIT-LGSDNALWFTENQNNAIGRI 167

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 18/103 (17%)

Query: 12  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 71
           T F+       P  +       L  ++   + I +I+TS                  G +
Sbjct: 174 TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS------------------GEI 215

Query: 72  DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTT 114
                      P  +      +++  +     I +++   +  
Sbjct: 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIE 258

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 20/103 (19%)

Query: 12  TVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHV 71
           T F+       P ++      +L   +   + I +++++                    +
Sbjct: 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN------------------NII 257

Query: 72  DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTT 114
           +  P   +   P G+  D    I+ A   +  I K++      
Sbjct: 258 EEYPIQIKSAEPHGICFDG-ETIWFAMECD-KIGKLTLIKDNM 298

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 14/144 (9%)

Query: 15  EGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGR 74
                G +   VA+     L++    +      S       + + +    E     +D  
Sbjct: 19  VYLLPG-QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN 77

Query: 75  PRG-------ARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-----VTTIAGGKWSR 122
                          P GL++D  GN ++ D     + K+         +      +   
Sbjct: 78  NAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS 137

Query: 123 GVGHVDGPSEDAKFSNDFDVVYVG 146
              H   P++ A        V+V 
Sbjct: 138 DQNHFCQPTDVA-VEPSTGAVFVS 160

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 19/144 (13%)

Query: 23  PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE-GYYGHVDGRPRGARMN 81
           P  +++   G   V D     ++K+     P+S+   +         G            
Sbjct: 93  PHGLSIDTDGNYWVTDVALHQVFKLD----PHSKEGPLLILGRSMQPGSDQNH-----FC 143

Query: 82  HPKGLAVD-DRGNIYIADTM-NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSN 138
            P  +AV+   G ++++D   N  I + S +G   T  G + S             +FS 
Sbjct: 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESS------GSSPRPGQFSV 197

Query: 139 DFDVVYVGSSCSLLVIDRGNQAIR 162
              +  V     L V DR N  I+
Sbjct: 198 PHSLALVPHLDQLCVADRENGRIQ 221

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 22/113 (19%)

Query: 5   EGGYTVETVFEGSKFGMEPFS------VAVSPSGELLVLDSENSNIYKISTSLSPYSRPK 58
           +    V  +   S FG   F+         + +G+    D E    + ++ S        
Sbjct: 226 DTKEFVREIKHAS-FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS-------- 276

Query: 59  LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 111
             +G     +      P     + P  +   + G +YI D     + K + T 
Sbjct: 277 --SGEIIDVFK-----PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 23/141 (16%)

Query: 23  PFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN 81
           P S+A+ P   +L V D EN  I    T    + R    A      +           ++
Sbjct: 198 PHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA----------IS 247

Query: 82  HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 141
           +  G      G  Y  D   +    ++ +    I    +     H D P +         
Sbjct: 248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII--DVFKPVRKHFDMPHD--------- 296

Query: 142 VVYVGSSCSLLVIDRGNQAIR 162
            +      ++ + D     + 
Sbjct: 297 -IVASEDGTVYIGDAHTNTVW 316

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 11/108 (10%), Positives = 23/108 (21%), Gaps = 12/108 (11%)

Query: 66  GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGV- 124
                +D            G+A+D + N+ I    +      S                 
Sbjct: 9   HVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEE 68

Query: 125 ----------GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 162
                       +   S    F     +  + +  +  V D     + 
Sbjct: 69  DTILVIDPNNAEILQSSGKNLFYLPHGLS-IDTDGNYWVTDVALHQVF 115

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 36/153 (23%)

Query: 9   TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY 68
            V   F  SK    P  V V+   E+ + D+    +   +                EG Y
Sbjct: 152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN---------------YEGQY 196

Query: 69  GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA-IRKISDTG--VTTIAGGKWSRGVG 125
               G       N+P G+ ++  G I IAD  N   +   +  G  ++ +          
Sbjct: 197 LRQIGGEG--ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK------V 248

Query: 126 HVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 158
                 +          V +    S+++  +  
Sbjct: 249 KHAQCFD----------VALMDDGSVVLASKDY 271

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 19/104 (18%)

Query: 16  GSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRP 75
           G+     P  V V   G ++V++ +   +                     G   H  G  
Sbjct: 116 GATILQHPRGVTVDNKGRIIVVECKVMRVIIFD---------------QNGNVLHKFGCS 160

Query: 76  RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAG 117
               +  P G+ V+D+  I+I+D     ++  +  G  +  I G
Sbjct: 161 --KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG 202

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 38/146 (26%)

Query: 21  MEPFSVAVSPSGELLVL--DSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGA 78
           + P  VAV  +   +++   S    I   +     Y +     G+               
Sbjct: 77  LYPNRVAVVRNSGDIIVTERSPTHQIQIYN----QYGQFVRKFGATI------------- 119

Query: 79  RMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKF 136
            + HP+G+ VD++G I + +   M +      G  +    G        H++ P+     
Sbjct: 120 -LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF-GCS-----KHLEFPN----- 167

Query: 137 SNDFDVVYVGSSCSLLVIDRGNQAIR 162
                 V V     + + D     ++
Sbjct: 168 -----GVVVNDKQEIFISDNRAHCVK 188

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 79  RMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSN 138
           +   P G+AV+ + +I +ADT N  I+     G      G+  +    +  P+  A   N
Sbjct: 28  QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN 87

Query: 139 DFDVVYVG 146
             D++   
Sbjct: 88  SGDIIVTE 95

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 40/156 (25%)

Query: 15  EGSKFGM--EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVD 72
            G   G   EP  VAV+   +++V D+ N  I                    EG +    
Sbjct: 22  FGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIF---------------DKEGRFKFQF 66

Query: 73  GR--PRGARMNHPKGLAVDDRGN--IYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGH 126
           G    R +++ +P  +AV       I    +    I+  +  G  V          G   
Sbjct: 67  GECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF-------GATI 119

Query: 127 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 162
           +  P            V V +   ++V++     + 
Sbjct: 120 LQHPRG----------VTVDNKGRIIVVECKVMRVI 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 48/447 (10%), Positives = 96/447 (21%), Gaps = 157/447 (35%)

Query: 10  VETVFEGS-KFGMEPFSV-AVSPSGELLVLDSENSNIYKISTSLSPY--SRPKLVAG--- 62
           VE V   + KF M P       PS    +   +   +Y  +   + Y  SR +       
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 63  -----SPEGYYGHVDGRPRGARMNHPKG-----LAVDDRGNIYIADTMNMAIRKISDTGV 112
                 P      +DG      +    G     +A+D                      V
Sbjct: 143 ALLELRPAKNVL-IDG------V---LGSGKTWVALD-------------VCL---SYKV 176

Query: 113 TTIAGGK--WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL--------LVIDRGNQAIR 162
                 K  W   + + + P    +           +  S         L I      +R
Sbjct: 177 QCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 163 EIQLH----------DDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD 212
            +              +  +    + F+L   +L+                    +++  
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--------------------TTRF- 274

Query: 213 PRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPE-EGFFG---------------SI 256
                      V  +     +    L          E +                   + 
Sbjct: 275 ---------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 257 GRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPP 316
               L   S + E         R     +     ++  N    T  ++ S      +   
Sbjct: 326 NPRRL---SIIAE-------SIRDGLATWDN---WKHVNCDKLTTIIESSL-----NVLE 367

Query: 317 PLETRTPTPKKSYHPYTI--KDL-----------------DKRQYTKQ--SKSYYNGWEV 355
           P E R     K +   ++                      D      +    S       
Sbjct: 368 PAEYR-----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 356 DYH---HGQQQQMPIHHQQQQHHHRQF 379
           +          ++ +  + +   HR  
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSI 449

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 27/156 (17%), Positives = 42/156 (26%), Gaps = 33/156 (21%)

Query: 9   TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYY 68
             + +           ++A +P G + V + E   I  I    +P    ++ A       
Sbjct: 21  PAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSI----TPDGNQQIHATVEGK-- 73

Query: 69  GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVD 128
                           GLA    G++        +I  +S            S G     
Sbjct: 74  --------------VSGLAFTSNGDLVATGWNADSIPVVSLVK---------SDGTVETL 110

Query: 129 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
               DA F N    +   S    L  D    AI  I
Sbjct: 111 LTLPDAIFLNG---ITPLSDTQYLTADSYRGAIWLI 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.81
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.6
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.6
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.53
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.49
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.47
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.45
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.41
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.4
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.4
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.39
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.38
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.38
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.37
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.36
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.36
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.31
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.3
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.29
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.28
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.27
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.21
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.21
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.21
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.17
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.11
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.04
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.01
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.0
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.99
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.98
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.98
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.97
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.82
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.81
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.8
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.8
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.77
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.71
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.71
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.7
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.65
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.64
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.57
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.54
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.46
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.45
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.39
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.29
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.26
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.25
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.15
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.13
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.11
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.08
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.08
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.08
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.05
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.02
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.95
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.88
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.74
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.72
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.69
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.61
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.56
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.5
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.37
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.36
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.32
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.27
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.26
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.25
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.23
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.18
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.08
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.07
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.92
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.73
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.7
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.66
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.55
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.52
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.49
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.42
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.41
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.38
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.24
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.01
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.0
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.95
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.91
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.85
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.8
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.76
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.74
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.72
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.63
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.06
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.91
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.68
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.53
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	94.4
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.78
3ow8_A	321	WD repeat-containing protein 61; structural genomi	93.62
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.5
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.42
4a2l_A	795	BT_4663, two-component system sensor histidine kin	93.26
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.86
3ow8_A	321	WD repeat-containing protein 61; structural genomi	92.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	92.6
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	92.52
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.38
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	92.32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	92.19
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.19
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	91.68
3ott_A	758	Two-component system sensor histidine kinase; beta	91.57
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	91.43
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	91.15
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	91.07
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	90.99
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	90.85
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	90.68
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	90.63
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	90.39
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	90.38
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.32
4a2l_A	795	BT_4663, two-component system sensor histidine kin	90.24
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	90.24
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	90.19
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	90.08
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	89.99
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	89.69
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	89.48
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	89.48
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	88.85
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	88.71
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	88.53
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	88.47
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	88.46
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	88.45
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	88.2
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	87.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	87.45
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	86.69
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	86.63
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	86.59
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	86.34
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	86.22
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	86.1
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	85.9
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	85.76
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	85.36
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	85.33
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	85.27
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	85.25
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	85.08
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	84.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	84.89
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	84.67
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	84.65
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	84.28
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	83.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	83.84
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	83.77
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	83.76
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.34
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	83.13
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	83.04
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	82.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	82.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	82.47
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	82.36
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	82.06
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	81.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	81.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	81.3
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	81.22
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	80.7
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	80.44
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	80.12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	80.1

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=3.6e-21  Score=203.59  Aligned_cols=151  Identities=25%  Similarity=0.335  Sum_probs=124.2

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCC--CCccEEEecCCCCcccCCCCCccCccCCCcc-eEEEc-------
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSP--YSRPKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAVD-------   89 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~--~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~-GIavD-------   89 (445)
                      ..|++||++++|+ |||+|+.+|+|++++.++..  ...+.+++|.. |..|+.||.+..++|+.|. +++++       
T Consensus       310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~  388 (496)
T 3kya_A          310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE  388 (496)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred             CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CCCcccCCcccccccCCCeEEEEEcccccccc
Confidence            5799999999998 89999999999999877432  11237888864 5677778999999999999 89998       


Q ss_pred             CCCCEEEEeCCCCEEEEEcCCC-cEEEecCcc------cCCCCCCCC-CccCcccCCCceEEEECC-CCeEEEEECCCCe
Q 013321           90 DRGNIYIADTMNMAIRKISDTG-VTTIAGGKW------SRGVGHVDG-PSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQA  160 (445)
Q Consensus        90 ~dG~LYVAD~~N~rIrkfd~dG-v~tiaGg~~------G~g~G~~dg-p~~~a~f~~P~gI~~vd~-dG~LyVaD~gn~r  160 (445)
                      .+|+|||||+.|||||+|+++| +++++|...      +..+|..+| ++..+.|+.|.+|+ +++ +|.|||+|++|+|
T Consensus       389 ~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa-vd~~~g~lyVaD~~N~r  467 (496)
T 3kya_A          389 EEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV-YDDVKEMFYVHDQVGHT  467 (496)
T ss_dssp             CCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE-EETTTTEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEE-EECCCCEEEEEeCCCCE
Confidence            6899999999999999999999 788887532      122355677 78899999999997 566 4999999999999


Q ss_pred             EEEEECCCCceee
Q 013321          161 IREIQLHDDDCSD  173 (445)
Q Consensus       161 Ir~i~l~~~~~~~  173 (445)
                      ||+|++++..|.-
T Consensus       468 Irki~~~~~~~~~  480 (496)
T 3kya_A          468 IRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEECCCC---
T ss_pred             EEEEECCCCcccc
Confidence            9999999877763

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.81  E-value=5.3e-19  Score=182.95  Aligned_cols=146  Identities=27%  Similarity=0.398  Sum_probs=120.1

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCC--CCCCccEEEecCCCCcccCCCCCccCccCCCcceEEE---------
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSL--SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAV---------   88 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg--~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav---------   88 (445)
                      ..+.+|+++++|+ |||+|..+++|++++.++  ...+.+.+++|.. +..|..+|....++|+.|.||++         
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d  351 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE  351 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT-TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC-CCCccCCCcccceEEcCCccEEEEcccccccc
Confidence            3577899999998 999999999999998763  2234567888863 55667788888899999999999         


Q ss_pred             cCCCCEEEEeCCCCEEEEEcCCC-cEEEecCcccCCCCCCCC-CccCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 013321           89 DDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  166 (445)
Q Consensus        89 D~dG~LYVAD~~N~rIrkfd~dG-v~tiaGg~~G~g~G~~dg-p~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l  166 (445)
                      |++|+|||||+.|+||++|+++| +.+++|.......|+.++ .+..+.|..|.+|++..++|.|||+|.+|+||++|++
T Consensus       352 d~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          352 EDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            89999999999999999999999 677776532112345566 7778899999999753389999999999999999987


Q ss_pred             C
Q 013321          167 H  167 (445)
Q Consensus       167 ~  167 (445)
                      +
T Consensus       432 e  432 (433)
T 4hw6_A          432 E  432 (433)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.78  E-value=5.8e-18  Score=173.14  Aligned_cols=139  Identities=25%  Similarity=0.400  Sum_probs=117.7

Q ss_pred             CCce-EEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           21 MEPF-SVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        21 ~~P~-gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      ..|. +|++++ +|.|||+|..+++|++++.+    |.+.+++|.. +..|..+|....++|+.|.||++|++|+|||||
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~----g~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad  340 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD----GECEWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD  340 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTT----CCEEEEEECT-TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecC----CCEEEEEeCC-CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence            4577 999999 68999999999999999988    5677888864 345666777778899999999999999999999


Q ss_pred             C-CCCEEEEEc-CCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 013321           99 T-MNMAIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  167 (445)
Q Consensus        99 ~-~N~rIrkfd-~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~  167 (445)
                      + .|+||++++ .+| +.++++....  .|..++....+.|..|.+|+ ++++|.|||+|.+|++|++|+++
T Consensus       341 ~~~~~~I~~~~~~~G~v~~~~g~~~~--~g~~~g~~~~~~~~~P~gia-vd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          341 GFKGYCLRKLDILDGYVSTVAGQVDV--ASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTTCEEEEEETTTTEEEEEEECTTC--BSCCCBSTTTCCBSSEEEEE-ECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCCEEEEEECCCCEEEEEeCCCCC--CCcCCCChhceEeCCceEEE-EcCCCCEEEEECCCCeEEEEEeC
Confidence            9 999999999 788 6677664221  35567777888999999997 68889999999999999999863

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=2.9e-18  Score=176.98  Aligned_cols=144  Identities=29%  Similarity=0.439  Sum_probs=117.4

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCC--CCCccEEEecCCCCcccCCCCCccCccCCCcc-eEEEc-------
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLS--PYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAVD-------   89 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~--~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~-GIavD-------   89 (445)
                      ..|.+|+++++|+ |||+|..+++|++++.++.  ....+.+++|.. +..|..+|....++|+.|. |++++       
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT-TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC-CCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            5799999999998 9999999999999988742  123367788764 5566667877888999999 89994       


Q ss_pred             -CCCCEEEEeCCCCEEEEEcCCC-cEEEecCc-ccCCCCCCCC-CccCcccCCCceEEEECC-CCeEEEEECCCCeEEEE
Q 013321           90 -DRGNIYIADTMNMAIRKISDTG-VTTIAGGK-WSRGVGHVDG-PSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREI  164 (445)
Q Consensus        90 -~dG~LYVAD~~N~rIrkfd~dG-v~tiaGg~-~G~g~G~~dg-p~~~a~f~~P~gI~~vd~-dG~LyVaD~gn~rIr~i  164 (445)
                       ++|+|||||+.|+||++|+.+| +.+++|.. .+. .|+.++ ++..+.|..|.+|+ +++ ++.|||+|.+|+||++|
T Consensus       349 D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~-~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGT-SGYNDGDLRQEARFNHPEGIV-YDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSS-SSCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEE
T ss_pred             CCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCC-CcccCCCchhhcEeCCCcEEE-EECCCCEEEEEECCCCeEEEE
Confidence             6699999999999999999999 66776642 122 244455 67888999999997 565 79999999999999999


Q ss_pred             ECC
Q 013321          165 QLH  167 (445)
Q Consensus       165 ~l~  167 (445)
                      +++
T Consensus       427 ~~e  429 (430)
T 3tc9_A          427 GYE  429 (430)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.61  E-value=5.1e-14  Score=137.62  Aligned_cols=139  Identities=19%  Similarity=0.269  Sum_probs=102.8

Q ss_pred             CCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEE
Q 013321           19 FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIA   97 (445)
Q Consensus        19 ~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVA   97 (445)
                      ....|.+|+++++|+|||+|..+++|++++.++.. ..+..+...  +..|..     ...|+.|.+|++++ +|+||||
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~--~~~g~~-----~~~~~~P~~ia~~~~~g~lyv~  160 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRS--MQPGSD-----QNHFCQPTDVAVEPSTGAVFVS  160 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBT--TBCCCS-----TTCCSSEEEEEECTTTCCEEEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEeccc--CCCCCC-----ccccCCCcEEEEeCCCCeEEEE
Confidence            34689999999999999999999999999998531 123333221  222221     23688999999999 8999999


Q ss_pred             eC-CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCC-CeEEEEECCCCeEEEEECC-CCce
Q 013321           98 DT-MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS-CSLLVIDRGNQAIREIQLH-DDDC  171 (445)
Q Consensus        98 D~-~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~d-G~LyVaD~gn~rIr~i~l~-~~~~  171 (445)
                      |. .+++|++++.+|..+...+..+.+     .......|..|.+|+ ++++ +.|||+|.++++|++++++ +...
T Consensus       161 d~~~~~~I~~~~~~g~~~~~~~~~g~~-----~~~~~~~~~~p~gia-~d~~~g~l~v~d~~~~~I~~~~~~~G~~~  231 (329)
T 3fvz_A          161 DGYCNSRIVQFSPSGKFVTQWGEESSG-----SSPRPGQFSVPHSLA-LVPHLDQLCVADRENGRIQCFKTDTKEFV  231 (329)
T ss_dssp             ECSSCCEEEEECTTSCEEEEECEECCS-----SSCCTTEESCEEEEE-EETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eCCCCCeEEEEcCCCCEEEEeccCCCC-----CCCCCcccCCCcEEE-EECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            97 799999999998443333222211     122345788999997 4665 9999999999999999998 4433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.2e-14  Score=149.99  Aligned_cols=131  Identities=16%  Similarity=0.188  Sum_probs=101.9

Q ss_pred             CCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           20 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      +..|++|++++ +|.|||+|..+++|+++++++   +....+....              ....|.+|+++++|+ |||+
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~---~~~~~~~~~~--------------~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT---QETTPLFTIQ--------------DSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT---TEEEEEEECS--------------SSSCCEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---CcEEEEEEcC--------------CCCcceeEEEcCCCCEEEEE
Confidence            46799999999 899999999999999999984   3332332221              134799999999999 9999


Q ss_pred             eCCCCEEEEEcCCC-------cEEEecCcccCCCCCCCCCccCcccCCCc-eEEEE--------CCCCeEEEEECCCCeE
Q 013321           98 DTMNMAIRKISDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDF-DVVYV--------GSSCSLLVIDRGNQAI  161 (445)
Q Consensus        98 D~~N~rIrkfd~dG-------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~-gI~~v--------d~dG~LyVaD~gn~rI  161 (445)
                      |..+++|++++.++       +.++++.. +. .|..++....+.|..|. +++ +        |.+|.|||+|.+|++|
T Consensus       288 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~~gv~-v~~~~y~~~D~~g~lyvaD~~n~~I  364 (430)
T 3tc9_A          288 VVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GA-KDWVDGVGKKARMHAPRQGTF-VKNPAYKGSSDEYDFYFCDRENHCI  364 (430)
T ss_dssp             ETTTTEEEEEEEETTTTEECCCEEEEECT-TC-BCCBCEEGGGCBBSSEEEEEE-EECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred             ECCCCEEEEEeCCcccccccceEEEeccC-CC-CCCCCCCCcceEeCCCcceEE-EccccccccCCCCeEEEEECCCcEE
Confidence            99999999998664       34565531 11 34456677788999999 554 5        4679999999999999


Q ss_pred             EEEECCCCc
Q 013321          162 REIQLHDDD  170 (445)
Q Consensus       162 r~i~l~~~~  170 (445)
                      ++|+.++..
T Consensus       365 ~~i~~~G~v  373 (430)
T 3tc9_A          365 RILTPQGRV  373 (430)
T ss_dssp             EEECTTSEE
T ss_pred             EEECCCCcE
Confidence            999977643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.60  E-value=1.7e-14  Score=149.18  Aligned_cols=132  Identities=16%  Similarity=0.197  Sum_probs=103.1

Q ss_pred             CCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE
Q 013321           20 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI   96 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV   96 (445)
                      +..|.+|++++ +|+|||+|..+++|+++++++   |.+ ..+....              ....+.+|+++++|+ |||
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~---g~~~~~~~~~~--------------~~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT---GTLTEEEVMMD--------------TKGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTTT---CCEEEEEEECS--------------CCSSCEEEEECTTSSEEEE
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC---CeEEEEEeccC--------------CCCCcccEEEeCCCCEEEE
Confidence            46799999999 899999999999999999873   444 3333221              012456899999998 999


Q ss_pred             EeCCCCEEEEEcCC---C----cEEEecCcccCCCCCCCCCccCcccCCCceEEEE--------CCCCeEEEEECCCCeE
Q 013321           97 ADTMNMAIRKISDT---G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV--------GSSCSLLVIDRGNQAI  161 (445)
Q Consensus        97 AD~~N~rIrkfd~d---G----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~v--------d~dG~LyVaD~gn~rI  161 (445)
                      +|..+++|++++.+   +    ..+++|.. +. .|..+++...+.|..|.+|+++        +.+|.|||+|.+|++|
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I  367 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SS-PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV  367 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEECT-TC-CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEecC-CC-CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence            99999999998854   2    24666531 21 3555777888999999999743        8899999999999999


Q ss_pred             EEEECCCCc
Q 013321          162 REIQLHDDD  170 (445)
Q Consensus       162 r~i~l~~~~  170 (445)
                      ++|++++..
T Consensus       368 ~~~~~~G~v  376 (433)
T 4hw6_A          368 RVLTPEGRV  376 (433)
T ss_dssp             EEECTTSEE
T ss_pred             EEECCCCCE
Confidence            999987743

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=8.7e-15  Score=154.87  Aligned_cols=134  Identities=16%  Similarity=0.204  Sum_probs=101.8

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCC-------CCCCCc---------cEEEecCCCCcccCCCCCccCccCCCc
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTS-------LSPYSR---------PKLVAGSPEGYYGHVDGRPRGARMNHP   83 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~d-------g~~~G~---------v~~vaG~~~G~~G~~dG~~~~a~Ln~P   83 (445)
                      .+|++|++++ +|.|||+|..+++|++++++       +.....         ...++-.              ..-..|
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~--------------~~~~~p  312 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI--------------ADPSWE  312 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC--------------SSSSCC
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec--------------CCCCCc
Confidence            5799999999 78999999999999999986       211100         0111111              012468


Q ss_pred             ceEEEcCCCC-EEEEeCCCCEEEEEcCCCc-------EEEecCcccCCCCCCCCCccCcccCCCceEEEEC-------CC
Q 013321           84 KGLAVDDRGN-IYIADTMNMAIRKISDTGV-------TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-------SS  148 (445)
Q Consensus        84 ~GIavD~dG~-LYVAD~~N~rIrkfd~dGv-------~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd-------~d  148 (445)
                      .+||++++|+ |||||+.+|||++++.++.       .+++|.. |. .|+.||++..++|+.|.++++++       .+
T Consensus       313 ~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~-~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~  390 (496)
T 3kya_A          313 FQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQ-SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEE  390 (496)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TB-CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCC
T ss_pred             eEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CC-CcccCCcccccccCCCeEEEEEccccccccCC
Confidence            9999999999 8999999999999886652       4666632 22 35568899999999999544566       68


Q ss_pred             CeEEEEECCCCeEEEEECCCCc
Q 013321          149 CSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       149 G~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      |.|||+|.+|+|||+|++++..
T Consensus       391 g~lyVaD~~N~rIr~i~~~G~v  412 (496)
T 3kya_A          391 YDFYFVDRLNFCVRKVTPEGIV  412 (496)
T ss_dssp             EEEEEEEGGGTEEEEECTTCBE
T ss_pred             CeEEEEECCCCEEEEEeCCCCE
Confidence            8999999999999999987743

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=1.1e-13  Score=141.46  Aligned_cols=133  Identities=21%  Similarity=0.256  Sum_probs=102.9

Q ss_pred             CCCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcc-eEEEcC-CCCEE
Q 013321           19 FGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAVDD-RGNIY   95 (445)
Q Consensus        19 ~g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~-GIavD~-dG~LY   95 (445)
                      .+..|.+|++++ +|.|||+|. +++|++++.++   +...++++..  ..+.        .-..|. +|++++ +|.||
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~---~~~~~~~~~~--~~g~--------~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKT---QEVTLIKQLE--LSGS--------LGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECT-TCEEEEEETTT---CCEEEEEECC--CCSC--------CCCSSCCEEEEETTTTEEE
T ss_pred             hcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCC---CCEEEEeccc--ccCC--------CCCCccccEEEeCCCCEEE
Confidence            346899999999 899999886 78999999874   4455554432  1111        112477 999999 68899


Q ss_pred             EEeCCCCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC-CCCeEEEEECCC
Q 013321           96 IADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHD  168 (445)
Q Consensus        96 VAD~~N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~-gn~rIr~i~l~~  168 (445)
                      |+|..+++|++++.+| +.++++....  .|..+++...+.|..|.+|+ ++++|.|||+|. ++++|++|++..
T Consensus       283 v~d~~~~~I~~~~~~g~~~~~~g~~~~--~g~~dg~~~~~~~~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGECEWFCGSATQ--KTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             EEETTTTEEEEECTTCCEEEEEECTTC--CSCBCEEGGGCBCSSEEEEE-ECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             EEeCCCCEEEEEecCCCEEEEEeCCCC--CCcCCCcccccEeCCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCC
Confidence            9999999999999888 5566553211  35566777788999999997 689999999999 999999999543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.53  E-value=4e-13  Score=131.27  Aligned_cols=145  Identities=17%  Similarity=0.229  Sum_probs=105.8

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCC------------------------eEEEEeCCCCCCCccEEEecCCCCcccCCCCCc
Q 013321           20 GMEPFSVAVSPSGELLVLDSENS------------------------NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRP   75 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~------------------------rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~   75 (445)
                      ...|.+||++++|+|||++..++                        +|++++.+.   |++....+.            
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~------------   87 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---AEILQSSGK------------   87 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---CCEEEEECT------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---CeEEeccCC------------
Confidence            46899999999999999999884                        578887752   444443332            


Q ss_pred             cCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECC-CCeEE
Q 013321           76 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLL  152 (445)
Q Consensus        76 ~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~-dG~Ly  152 (445)
                        ..|+.|.+|++|++|+|||+|..+++|++++.+|.  .+...+..+. .|     .....|..|.+|+ +++ +|.||
T Consensus        88 --~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-~g-----~~~~~~~~P~~ia-~~~~~g~ly  158 (329)
T 3fvz_A           88 --NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-PG-----SDQNHFCQPTDVA-VEPSTGAVF  158 (329)
T ss_dssp             --TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB-CC-----CSTTCCSSEEEEE-ECTTTCCEE
T ss_pred             --CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC-CC-----CCccccCCCcEEE-EeCCCCeEE
Confidence              24789999999999999999999999999998873  2222222111 11     1234688999997 576 89999


Q ss_pred             EEEC-CCCeEEEEECCCCceeecCC-----------CCccceEEEEec
Q 013321          153 VIDR-GNQAIREIQLHDDDCSDNYD-----------DTFHLGIFVLVA  188 (445)
Q Consensus       153 VaD~-gn~rIr~i~l~~~~~~~~~~-----------~g~P~gIav~~~  188 (445)
                      |+|. ++++|++++.++........           ...|.+|++...
T Consensus       159 v~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~  206 (329)
T 3fvz_A          159 VSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH  206 (329)
T ss_dssp             EEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred             EEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence            9997 89999999987765444321           124778888753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.49  E-value=1.2e-12  Score=131.03  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=106.6

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||+|+ +|+||++|..+++|.+++.+|..   ..++..               ..|..|.+|++|+ +|.||++|
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l~~---------------~~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLW---------------QSLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------TTCSCEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---eEEEEe---------------CCCCCcceEEEecCcCeEEEec
Confidence            5799999997 78899999999999999998532   222221               1377899999997 77899999


Q ss_pred             CCC-CEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--c
Q 013321           99 TMN-MAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--N  174 (445)
Q Consensus        99 ~~N-~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~--~  174 (445)
                      +.+ ++|.+++.+|. .+...               ...+..|++|++...++.||++|.++++|+++++++.....  .
T Consensus       178 ~~~~~~I~r~~~dG~~~~~~~---------------~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~  242 (349)
T 3v64_C          178 WGNTPRIEASSMDGSGRRIIA---------------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS  242 (349)
T ss_dssp             CSSSCEEEEEETTSCSCEESC---------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             cCCCCEEEEEeCCCCCcEEEE---------------ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe
Confidence            998 99999999882 22211               11367899998644788999999999999999998855332  2


Q ss_pred             CCCCccceEEEEeccceEE
Q 013321          175 YDDTFHLGIFVLVAAAFFG  193 (445)
Q Consensus       175 ~~~g~P~gIav~~~a~~vg  193 (445)
                      ...+.|.||++..+..++.
T Consensus       243 ~~~~~P~giav~~~~ly~t  261 (349)
T 3v64_C          243 QGLPHPFAITVFEDSLYWT  261 (349)
T ss_dssp             SSCSSEEEEEEETTEEEEE
T ss_pred             CCCCCceEEEEECCEEEEe
Confidence            3456899999965444433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.47  E-value=2.1e-12  Score=130.95  Aligned_cols=139  Identities=19%  Similarity=0.173  Sum_probs=106.4

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||||+ +|+||++|..+++|.+++++|..   ..+++.               ..|..|.||++|+ +|.||++|
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---~~~l~~---------------~~l~~P~giavdp~~g~ly~td  220 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLW---------------QSLEKPRAIALHPMEGTIYWTD  220 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---CEEEEC---------------SSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---eEEeec---------------CCCCCCcEEEEEcCCCeEEEec
Confidence            4799999997 78899999999999999998532   233321               1377999999996 67799999


Q ss_pred             CCC-CEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--
Q 013321           99 TMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--  173 (445)
Q Consensus        99 ~~N-~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~--  173 (445)
                      +.+ ++|.+++.+|  ..++..                ..+..|++|++...++.|||+|..+++|+++++++.....  
T Consensus       221 ~~~~~~I~r~~~dG~~~~~~~~----------------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  284 (386)
T 3v65_B          221 WGNTPRIEASSMDGSGRRIIAD----------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI  284 (386)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC----------------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE
T ss_pred             cCCCCEEEEEeCCCCCcEEEEE----------------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE
Confidence            998 9999999988  333321                1266899998654788999999999999999998755332  


Q ss_pred             cCCCCccceEEEEeccceEE
Q 013321          174 NYDDTFHLGIFVLVAAAFFG  193 (445)
Q Consensus       174 ~~~~g~P~gIav~~~a~~vg  193 (445)
                      ....+.|.||++..+..++.
T Consensus       285 ~~~~~~P~giav~~~~ly~t  304 (386)
T 3v65_B          285 SQGLPHPFAITVFEDSLYWT  304 (386)
T ss_dssp             CSSCSSEEEEEEETTEEEEE
T ss_pred             ECCCCCceEEEEECCEEEEe
Confidence            23456899999965544433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.46  E-value=1.8e-12  Score=132.31  Aligned_cols=138  Identities=17%  Similarity=0.155  Sum_probs=105.2

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||||. .++||++|..+++|.+++++|.   ...+++..               .|..|.+|++|+ .|.||++|
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~---~~~~l~~~---------------~~~~P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTC---SEEEEEEC---------------SSCCEEEEEEETTTTEEEEEE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCC---ceEEEEeC---------------CCCCcceEEEecccCeEEEEe
Confidence            5799999998 7899999999999999999852   23333221               377899999998 67899999


Q ss_pred             CC-CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec-
Q 013321           99 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-  174 (445)
Q Consensus        99 ~~-N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~-  174 (445)
                      ++ +++|.+++.+|  ..++..                ..+.+|++|++...++.||++|+.+++|+++++++...... 
T Consensus       221 ~~~~~~I~~~~~dG~~~~~~~~----------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  284 (400)
T 3p5b_L          221 WGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  284 (400)
T ss_dssp             CSSSCCEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred             CCCCCEEEEEeCCCCccEEEEE----------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence            87 58999999988  333311                13678999986557889999999999999999988654332 


Q ss_pred             ---CCCCccceEEEEeccceE
Q 013321          175 ---YDDTFHLGIFVLVAAAFF  192 (445)
Q Consensus       175 ---~~~g~P~gIav~~~a~~v  192 (445)
                         .....|.++++..+..++
T Consensus       285 ~~~~~l~~P~gl~v~~~~lyw  305 (400)
T 3p5b_L          285 EDEKRLAHPFSLAVFEDKVFW  305 (400)
T ss_dssp             ECSSTTSSEEEEEEETTEEEE
T ss_pred             eCCCCCCCCEEEEEeCCEEEE
Confidence               224568888886543333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.46  E-value=2.5e-12  Score=126.46  Aligned_cols=139  Identities=17%  Similarity=0.134  Sum_probs=104.4

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||+|+ +|+||++|..+++|.+++++|.   ...+++..               .+..|.+|++|+ +|.|||+|
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~---------------~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEEC---------------TTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC---ceEEEEEC---------------CCCCcceEEeCCCCCEEEEEc
Confidence            5799999996 7889999999999999999842   22333211               367899999997 78899999


Q ss_pred             CCC-CEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec--
Q 013321           99 TMN-MAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--  174 (445)
Q Consensus        99 ~~N-~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~--  174 (445)
                      .++ ++|.+++.+|. .....               ...+..|++|++...++.||++|..+++|.++++++......  
T Consensus       139 ~~~~~~I~~~~~dG~~~~~~~---------------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~  203 (316)
T 1ijq_A          139 WGTPAKIKKGGLNGVDIYSLV---------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  203 (316)
T ss_dssp             CSSSCEEEEEETTSCCEEEEE---------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCCeEEEE---------------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee
Confidence            986 89999999883 22211               113678999986546789999999999999999987544332  


Q ss_pred             --CCCCccceEEEEeccceE
Q 013321          175 --YDDTFHLGIFVLVAAAFF  192 (445)
Q Consensus       175 --~~~g~P~gIav~~~a~~v  192 (445)
                        .....|.||++..+..++
T Consensus       204 ~~~~~~~P~giav~~~~ly~  223 (316)
T 1ijq_A          204 DEKRLAHPFSLAVFEDKVFW  223 (316)
T ss_dssp             CTTTTSSEEEEEEETTEEEE
T ss_pred             cCCccCCcEEEEEECCEEEE
Confidence              224578999987543333

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.45  E-value=2.6e-12  Score=127.48  Aligned_cols=134  Identities=16%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||+|+ +|+||++|..+++|.+++++|.   ...++..               ..+..|.||++|+ .|.||++|
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~---------------~~~~~P~giavdp~~g~ly~td  140 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS---LRKVLFW---------------QELDQPRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEC---------------SSCSSEEEEEEEGGGTEEEEEE
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCC---cEEEEEe---------------CCCCCccEEEEeCCCCEEEEEe
Confidence            5799999997 7899999999999999999852   1233321               1377899999997 68899999


Q ss_pred             CC-CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--
Q 013321           99 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--  173 (445)
Q Consensus        99 ~~-N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~--  173 (445)
                      .+ +++|.+++.+|  ..++..                ..+..|++|++...++.||++|+.+++|+++++++.....  
T Consensus       141 ~~~~~~I~r~~~dG~~~~~~~~----------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  204 (318)
T 3sov_A          141 WGEVPKIERAGMDGSSRFIIIN----------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV  204 (318)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             cCCCCEEEEEEcCCCCeEEEEE----------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence            86 79999999988  333321                1367899998544688999999999999999998755433  


Q ss_pred             cCCCCccceEEEEec
Q 013321          174 NYDDTFHLGIFVLVA  188 (445)
Q Consensus       174 ~~~~g~P~gIav~~~  188 (445)
                      ....+.|.|+++..+
T Consensus       205 ~~~~~~P~glav~~~  219 (318)
T 3sov_A          205 KGSLPHPFALTLFED  219 (318)
T ss_dssp             CSCCSCEEEEEEETT
T ss_pred             cCCCCCceEEEEeCC
Confidence            224568999998754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.42  E-value=1.2e-11  Score=123.57  Aligned_cols=144  Identities=13%  Similarity=0.093  Sum_probs=108.8

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321            7 GYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus         7 G~~v~tv~~Gs~~g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      |..++.+..   ....|.+|++++ ++.||++|..+++|+++++++.   ....+...               .+..|.|
T Consensus        62 g~~~~~~~~---~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~~~~~---------------~~~~p~g  120 (349)
T 3v64_C           62 RSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEEVVST---------------GLESPGG  120 (349)
T ss_dssp             SCCEEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSCCCE
T ss_pred             CCeeEEeec---CCCceEEEEEeccccEEEEEeccCCceEEEecCCC---CceEEEeC---------------CCCCccE
Confidence            444444443   235699999996 7889999999999999999853   23333322               2668999


Q ss_pred             EEEcC-CCCEEEEeCCCCEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC-CeE
Q 013321           86 LAVDD-RGNIYIADTMNMAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAI  161 (445)
Q Consensus        86 IavD~-dG~LYVAD~~N~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn-~rI  161 (445)
                      ||+|. .|+||++|..+++|.+++.+|.  .++.                ...+..|.+|++...++.||++|.++ ++|
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~----------------~~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL----------------WQSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----------------CTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE----------------eCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence            99996 7889999999999999998882  3321                12356799998544688999999998 999


Q ss_pred             EEEECCCCceeec--CCCCccceEEEEe
Q 013321          162 REIQLHDDDCSDN--YDDTFHLGIFVLV  187 (445)
Q Consensus       162 r~i~l~~~~~~~~--~~~g~P~gIav~~  187 (445)
                      .++++++......  .....|.||++..
T Consensus       185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~  212 (349)
T 3v64_C          185 EASSMDGSGRRIIADTHLFWPNGLTIDY  212 (349)
T ss_dssp             EEEETTSCSCEESCCSSCSCEEEEEEET
T ss_pred             EEEeCCCCCcEEEEECCCCCcceEEEeC
Confidence            9999998665443  3455799999984

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.42  E-value=1.1e-11  Score=116.93  Aligned_cols=137  Identities=15%  Similarity=0.241  Sum_probs=101.3

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.+|+++++|+|||+|..+++|++++.+    |+.....+..             ..+..|.+|++|++|+|||+|..
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~-------------~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN----GNVLHKFGCS-------------KHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEEECT-------------TTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcCC----CCEEEEeCCC-------------CccCCcEEEEECCCCCEEEEECC
Confidence            579999999999999999999999999987    4443333321             13678999999999999999999


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCC-eEEEEECCCCceeecC---C
Q 013321          101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQLHDDDCSDNY---D  176 (445)
Q Consensus       101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~-rIr~i~l~~~~~~~~~---~  176 (445)
                      +++|++++.+|........             ...+..|.+|+ ++++|.|||++.+++ +|.+++.++.......   .
T Consensus       184 ~~~i~~~~~~g~~~~~~~~-------------~g~~~~p~~i~-~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~  249 (286)
T 1q7f_A          184 AHCVKVFNYEGQYLRQIGG-------------EGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQLISALESKVK  249 (286)
T ss_dssp             GTEEEEEETTCCEEEEESC-------------TTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC
T ss_pred             CCEEEEEcCCCCEEEEEcc-------------CCccCCCcEEE-ECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCC
Confidence            9999999988843221111             11246788886 688999999999886 9999998765433321   1


Q ss_pred             CCccceEEEEec
Q 013321          177 DTFHLGIFVLVA  188 (445)
Q Consensus       177 ~g~P~gIav~~~  188 (445)
                      ...|.++++...
T Consensus       250 ~~~~~~i~~~~~  261 (286)
T 1q7f_A          250 HAQCFDVALMDD  261 (286)
T ss_dssp             CSCEEEEEEETT
T ss_pred             CCcceeEEECCC
Confidence            223556666543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.41  E-value=4.4e-12  Score=140.99  Aligned_cols=138  Identities=17%  Similarity=0.164  Sum_probs=104.0

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||||. .++|||+|..+++|.+++++|.   ...+++..               .|..|.|||||+ .|.|||+|
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---~~~~l~~~---------------~l~~P~gIaVDp~~g~LYwtD  532 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTD  532 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEEC---------------TTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCC---eEEEEEeC---------------CCCCcceEEEecCCCCEEEec
Confidence            5799999998 4589999999999999999852   23333321               377899999998 58899999


Q ss_pred             CCC-CEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeecC
Q 013321           99 TMN-MAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY  175 (445)
Q Consensus        99 ~~N-~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~  175 (445)
                      +++ ++|.+++.+|.  .++..                ..|.+|.+|++...++.|||+|.++++|+++++++.......
T Consensus       533 ~g~~~~I~~~~~dG~~~~~lv~----------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~  596 (791)
T 3m0c_C          533 WGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  596 (791)
T ss_dssp             CSSSCEEEEEETTSCCEEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCCCCeEEEEecCCCceEEEEe----------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence            986 89999999983  33311                236789999865578999999999999999999986544321


Q ss_pred             ----CCCccceEEEEeccceE
Q 013321          176 ----DDTFHLGIFVLVAAAFF  192 (445)
Q Consensus       176 ----~~g~P~gIav~~~a~~v  192 (445)
                          ....|.+|++..+.+|+
T Consensus       597 ~~~~~l~~P~glav~~~~lYw  617 (791)
T 3m0c_C          597 EDEKRLAHPFSLAVFEDKVFW  617 (791)
T ss_dssp             ECTTTTSSEEEEEEETTEEEE
T ss_pred             cCCCccCCCCEEEEeCCEEEE
Confidence                23356667665543333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.40  E-value=1.1e-11  Score=117.09  Aligned_cols=134  Identities=16%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.+|++++ +|.|||+|..+++|.+++.++..   ...+...               .+..|.+|++|+ +|.|||+|
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~~~~~~~---------------~~~~P~~i~vd~~~g~lyv~~  140 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---RRVLFDT---------------GLVNPRGIVTDPVRGNLYWTD  140 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECS---------------SCSSEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---EEEEEEC---------------CCCCccEEEEeeCCCEEEEEE
Confidence            5899999998 57899999999999999998532   2223211               256899999999 68899999


Q ss_pred             CC--CCEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee-e
Q 013321           99 TM--NMAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS-D  173 (445)
Q Consensus        99 ~~--N~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~-~  173 (445)
                      ..  +++|.+++.+|.  .++..                ..+..|.+|++....+.|||+|.++++|.++++++.... .
T Consensus       141 ~~~~~~~I~~~~~dg~~~~~~~~----------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  204 (267)
T 1npe_A          141 WNRDNPKIETSHMDGTNRRILAQ----------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV  204 (267)
T ss_dssp             CCSSSCEEEEEETTSCCCEEEEC----------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             CCCCCcEEEEEecCCCCcEEEEE----------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence            87  689999998872  22210                135679999754446799999999999999999864322 2


Q ss_pred             cCCCCccceEEEEec
Q 013321          174 NYDDTFHLGIFVLVA  188 (445)
Q Consensus       174 ~~~~g~P~gIav~~~  188 (445)
                      ......|.+|++..+
T Consensus       205 ~~~~~~P~gi~~d~~  219 (267)
T 1npe_A          205 LEGLQYPFAVTSYGK  219 (267)
T ss_dssp             EECCCSEEEEEEETT
T ss_pred             ecCCCCceEEEEeCC
Confidence            234567888887643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.40  E-value=1e-11  Score=134.29  Aligned_cols=138  Identities=13%  Similarity=0.137  Sum_probs=107.1

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||||. .++||++|..+++|.+++++|..   ..++...               .|+.|.+|++|+ +|.||++|
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~---~~~l~~~---------------~l~~P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM---RKILISE---------------DLEEPRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECT---------------TCCSEEEEEEETTTTEEEEEE
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe---EEEEEEC---------------CCCCeeeEEEEcCCCcEEEec
Confidence            5799999996 78899999999999999998532   2333321               388999999998 59999999


Q ss_pred             CCC-CEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--
Q 013321           99 TMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--  173 (445)
Q Consensus        99 ~~N-~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~--  173 (445)
                      +++ .+|.+++.+|  ..++..                ..|.+|++|++...++.||++|.++++|.++++++.....  
T Consensus       454 ~g~~~~I~r~~~dG~~~~~l~~----------------~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~  517 (619)
T 3s94_A          454 WGEIPKIERAALDGSDRVVLVN----------------TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV  517 (619)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred             CCCCCEEEEEccCCCccEEEEe----------------CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence            885 8999999888  333321                1467999998655688999999999999999998865433  


Q ss_pred             cCCCCccceEEEEeccceE
Q 013321          174 NYDDTFHLGIFVLVAAAFF  192 (445)
Q Consensus       174 ~~~~g~P~gIav~~~a~~v  192 (445)
                      ......|.||++..+-.|+
T Consensus       518 ~~~l~~P~glav~~~~ly~  536 (619)
T 3s94_A          518 EDKIPHIFGFTLLGDYVYW  536 (619)
T ss_dssp             ECCCCSSCCEEEETTEEEE
T ss_pred             ccCCCCcEEEEEECCEEEE
Confidence            2345578899887653333

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.39  E-value=1.8e-11  Score=123.98  Aligned_cols=133  Identities=14%  Similarity=0.119  Sum_probs=104.3

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.+|++++ ++.||++|..+++|+++++++.   .+..+...               .+..|.|||+|+ .|+|||+|
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~~~~~---------------~~~~p~glavd~~~g~lY~~d  177 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEEVVST---------------GLESPGGLAVDWVHDKLYWTD  177 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CEEEEECS---------------SCSCCCCEEEETTTTEEEEEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---CcEEEEeC---------------CCCCccEEEEEeCCCeEEEEc
Confidence            5799999996 7889999999999999999852   23344322               266899999996 78899999


Q ss_pred             CCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceeec-
Q 013321           99 TMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSDN-  174 (445)
Q Consensus        99 ~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn-~rIr~i~l~~~~~~~~-  174 (445)
                      ..+++|.+++.+|  ..++..                ..+..|.+|++...++.||++|.++ ++|+++++++...... 
T Consensus       178 ~~~~~I~~~~~dg~~~~~l~~----------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  241 (386)
T 3v65_B          178 SGTSRIEVANLDGAHRKVLLW----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA  241 (386)
T ss_dssp             TTTTEEEECBTTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             CCCCeEEEEeCCCCceEEeec----------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence            9999999999887  233311                2356899998544688999999998 9999999998654432 


Q ss_pred             -CCCCccceEEEEe
Q 013321          175 -YDDTFHLGIFVLV  187 (445)
Q Consensus       175 -~~~g~P~gIav~~  187 (445)
                       .....|.||++..
T Consensus       242 ~~~~~~PnGlavd~  255 (386)
T 3v65_B          242 DTHLFWPNGLTIDY  255 (386)
T ss_dssp             CSSCSCEEEEEEEG
T ss_pred             ECCCCCeeeEEEeC
Confidence             3455799999984

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.38  E-value=2.2e-11  Score=119.64  Aligned_cols=126  Identities=21%  Similarity=0.261  Sum_probs=94.2

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP   83 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdp-dG~LYVaDs~n-~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P   83 (445)
                      +|....++...  ....|.+|++|| +|.||++|.++ ++|.+++++|    ....+...              ..+..|
T Consensus       107 ~g~~~~~~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG----~~~~~~~~--------------~~~~~P  166 (316)
T 1ijq_A          107 KGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----VDIYSLVT--------------ENIQWP  166 (316)
T ss_dssp             TSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS----CCEEEEEC--------------SSCSCE
T ss_pred             CCCceEEEEEC--CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC----CCeEEEEE--------------CCCCCc
Confidence            34444444432  235899999998 78899999886 8999999984    33332221              137799


Q ss_pred             ceEEEcC-CCCEEEEeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCe
Q 013321           84 KGLAVDD-RGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA  160 (445)
Q Consensus        84 ~GIavD~-dG~LYVAD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~r  160 (445)
                      +||++|+ ++.|||+|..+++|.+++.+|  ..++...              ...+..|.+|++ + ++.||++|.++++
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~--------------~~~~~~P~giav-~-~~~ly~~d~~~~~  230 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAV-F-EDKVFWTDIINEA  230 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--------------TTTTSSEEEEEE-E-TTEEEEEETTTTE
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec--------------CCccCCcEEEEE-E-CCEEEEEECCCCe
Confidence            9999996 567999999999999999887  3443221              123568999974 4 5899999999999


Q ss_pred             EEEEECC
Q 013321          161 IREIQLH  167 (445)
Q Consensus       161 Ir~i~l~  167 (445)
                      |.++++.
T Consensus       231 V~~~~~~  237 (316)
T 1ijq_A          231 IFSANRL  237 (316)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999974

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.38  E-value=2.6e-11  Score=114.49  Aligned_cols=134  Identities=15%  Similarity=0.109  Sum_probs=100.9

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|++|++|+ ++.|||+|..+++|.+++.++.   ....+...               .+..|.+|++|+ .|.|||+|
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~---------------~~~~p~~ia~d~~~~~lyv~d   97 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---EPTTIIRQ---------------DLGSPEGIALDHLGRTIFWTD   97 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC---CCEEEECT---------------TCCCEEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC---CcEEEEEC---------------CCCCccEEEEEecCCeEEEEE
Confidence            3689999998 5789999999999999999853   23333211               267899999998 47899999


Q ss_pred             CCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC--CCeEEEEECCCCceeec
Q 013321           99 TMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG--NQAIREIQLHDDDCSDN  174 (445)
Q Consensus        99 ~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g--n~rIr~i~l~~~~~~~~  174 (445)
                      ..+++|.+++.+|  ..++..                ..+..|.+|++...++.|||+|.+  +++|.++++++......
T Consensus        98 ~~~~~I~~~~~~g~~~~~~~~----------------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~  161 (267)
T 1npe_A           98 SQLDRIEVAKMDGTQRRVLFD----------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (267)
T ss_dssp             TTTTEEEEEETTSCSCEEEEC----------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEE----------------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence            9999999999887  233211                124578999754347899999987  78999999987554322


Q ss_pred             --CCCCccceEEEEec
Q 013321          175 --YDDTFHLGIFVLVA  188 (445)
Q Consensus       175 --~~~g~P~gIav~~~  188 (445)
                        .....|.++++...
T Consensus       162 ~~~~~~~P~gia~d~~  177 (267)
T 1npe_A          162 AQDNLGLPNGLTFDAF  177 (267)
T ss_dssp             ECTTCSCEEEEEEETT
T ss_pred             EECCCCCCcEEEEcCC
Confidence              33457899998763

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.37  E-value=1.7e-11  Score=132.77  Aligned_cols=138  Identities=15%  Similarity=0.121  Sum_probs=106.1

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||||. .|+||++|..+++|.+++++|..   ..++...               .|..|.+|++|+ +|.||++|
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~---~~~l~~~---------------~l~~P~~iavdp~~G~lY~tD  141 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH---RQVLVWK---------------DLDSPRALALDPAEGFMYWTE  141 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---CEEEECS---------------SCCCEEEEEEETTTTEEEEEE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---EEEEEeC---------------CCCCcccEEEccCCCeEEEeC
Confidence            4799999997 68899999999999999998532   2333211               378999999997 78999999


Q ss_pred             CC-CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-c
Q 013321           99 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-N  174 (445)
Q Consensus        99 ~~-N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~-~  174 (445)
                      ++ +.+|.+++.+|  +.++..                 .+.+|++|++...++.||++|.++++|+++++++..... .
T Consensus       142 ~g~~~~I~r~~~dG~~~~~l~~-----------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~  204 (628)
T 4a0p_A          142 WGGKPKIDRAAMDGSERTTLVP-----------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA  204 (628)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC-----------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCCCCEEEEEeCCCCceEEEEC-----------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee
Confidence            87 89999999888  344321                 256899998655578999999999999999998854332 2


Q ss_pred             CCCCccceEEEEeccceEE
Q 013321          175 YDDTFHLGIFVLVAAAFFG  193 (445)
Q Consensus       175 ~~~g~P~gIav~~~a~~vg  193 (445)
                      .....|.|+++..+..++.
T Consensus       205 ~~l~~P~glav~~~~ly~t  223 (628)
T 4a0p_A          205 DDLPHPFGLTQYQDYIYWT  223 (628)
T ss_dssp             ECCSCEEEEEEETTEEEEE
T ss_pred             ccCCCceEEEEECCEEEEe
Confidence            3345788888876544443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.36  E-value=3e-11  Score=119.81  Aligned_cols=131  Identities=19%  Similarity=0.201  Sum_probs=97.0

Q ss_pred             CCCceEEEEcC-CCcEEEEeCC-CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEE
Q 013321           20 GMEPFSVAVSP-SGELLVLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI   96 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~-n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV   96 (445)
                      ...|.+|++|+ .|.||++|.+ +++|.+++++|.   ....++..               .+..|+||++|+ ++.|||
T Consensus       121 ~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---~~~~~~~~---------------~l~~Pnglavd~~~~~lY~  182 (318)
T 3sov_A          121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFIIINS---------------EIYWPNGLTLDYEEQKLYW  182 (318)
T ss_dssp             CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC---SCEEEECS---------------SCSCEEEEEEETTTTEEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC---CeEEEEEC---------------CCCCccEEEEeccCCEEEE
Confidence            46899999998 6899999975 799999999852   12233221               378999999997 677999


Q ss_pred             EeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC-CCceee
Q 013321           97 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCSD  173 (445)
Q Consensus        97 AD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~-~~~~~~  173 (445)
                      +|+.+++|.+++.+|  ..++..                ..+..|.+|++ + ++.||++|.++++|.++++. +.....
T Consensus       183 aD~~~~~I~~~d~dG~~~~~~~~----------------~~~~~P~glav-~-~~~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          183 ADAKLNFIHKSNLDGTNRQAVVK----------------GSLPHPFALTL-F-EDILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEC----------------SCCSCEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EECCCCEEEEEcCCCCceEEEec----------------CCCCCceEEEE-e-CCEEEEEecCCCeEEEEECCCCCceEE
Confidence            999999999999887  333321                13568999974 4 56999999999999999984 433222


Q ss_pred             -cCCCCccceEEEE
Q 013321          174 -NYDDTFHLGIFVL  186 (445)
Q Consensus       174 -~~~~g~P~gIav~  186 (445)
                       ......|.+|++.
T Consensus       245 i~~~~~~P~~i~v~  258 (318)
T 3sov_A          245 IHSDIFSPMDIHAF  258 (318)
T ss_dssp             EECCCSSCCCEEEE
T ss_pred             EeCCCCCCcEEEEe
Confidence             2233456666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.36  E-value=5.4e-11  Score=112.08  Aligned_cols=136  Identities=18%  Similarity=0.283  Sum_probs=101.8

Q ss_pred             CCceEEEE-cCCCcEEEEeCC-CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           21 MEPFSVAV-SPSGELLVLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAV-dpdG~LYVaDs~-n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      ..|.+|++ +++|+|||++.. +++|.+++.+    |+.....+.              ..+..|.+|+++++|+|||+|
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~----g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~  138 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY----GQFVRKFGA--------------TILQHPRGVTVDNKGRIIVVE  138 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECTT----SCEEEEECT--------------TTCSCEEEEEECTTSCEEEEE
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECCC----CcEEEEecC--------------ccCCCceEEEEeCCCCEEEEE
Confidence            57999999 579999999975 8999999976    443333222              135689999999999999999


Q ss_pred             CCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeecCCC-
Q 013321           99 TMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD-  177 (445)
Q Consensus        99 ~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~~~-  177 (445)
                      ..+++|.+++.+|......+.             ...+..|.+|+ ++++|.|||+|..+++|++++..+......... 
T Consensus       139 ~~~~~i~~~~~~g~~~~~~~~-------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g  204 (286)
T 1q7f_A          139 CKVMRVIIFDQNGNVLHKFGC-------------SKHLEFPNGVV-VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEG  204 (286)
T ss_dssp             TTTTEEEEECTTSCEEEEEEC-------------TTTCSSEEEEE-ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTT
T ss_pred             CCCCEEEEEcCCCCEEEEeCC-------------CCccCCcEEEE-ECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCC
Confidence            999999999988843221110             12345788886 688999999999999999999877654433222 


Q ss_pred             --CccceEEEEec
Q 013321          178 --TFHLGIFVLVA  188 (445)
Q Consensus       178 --g~P~gIav~~~  188 (445)
                        ..|.+|++...
T Consensus       205 ~~~~p~~i~~d~~  217 (286)
T 1q7f_A          205 ITNYPIGVGINSN  217 (286)
T ss_dssp             TSCSEEEEEECTT
T ss_pred             ccCCCcEEEECCC
Confidence              46777777643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.34  E-value=5e-11  Score=121.58  Aligned_cols=138  Identities=20%  Similarity=0.130  Sum_probs=103.4

Q ss_pred             CCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCC-CccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEE
Q 013321           20 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPY-SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI   96 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~-G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV   96 (445)
                      ...|.+|++++ ++.||++|..+++|++++.++... +....++..               .+..|.|||+|. .++|||
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---------------~~~~p~glavD~~~~~lY~  175 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------DIQAPDGLAVDWIHSNIYW  175 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS---------------SCSCEEEEEEETTTTEEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC---------------CCCCcccEEEEecCCceEE
Confidence            36799999997 688999999999999999875210 122333322               367899999997 788999


Q ss_pred             EeCCCCEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCCCceee
Q 013321           97 ADTMNMAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD  173 (445)
Q Consensus        97 AD~~N~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g-n~rIr~i~l~~~~~~~  173 (445)
                      +|..+++|.+++.+|.  .++..                ..+..|.+|++....|.||++|.+ +++|+++++++.....
T Consensus       176 ~d~~~~~I~~~~~~g~~~~~l~~----------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          176 TDSVLGTVSVADTKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             EETTTTEEEEECTTTCSEEEEEE----------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             EECCCCeEEEEeCCCCceEEEEe----------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence            9999999999998882  33311                135679999854568899999987 5899999999865443


Q ss_pred             c--CCCCccceEEEEec
Q 013321          174 N--YDDTFHLGIFVLVA  188 (445)
Q Consensus       174 ~--~~~g~P~gIav~~~  188 (445)
                      .  .....|.||+++..
T Consensus       240 ~~~~~l~~P~glavd~~  256 (400)
T 3p5b_L          240 LVTENIQWPNGITLDLL  256 (400)
T ss_dssp             EECSSCSCEEEEEEETT
T ss_pred             EEECCCCceEEEEEEeC
Confidence            2  34568999999843

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.31  E-value=7.4e-11  Score=131.17  Aligned_cols=138  Identities=19%  Similarity=0.109  Sum_probs=103.2

Q ss_pred             CCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCC-CccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC-CEEE
Q 013321           20 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPY-SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYI   96 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~-G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYV   96 (445)
                      ...|.+|++++ ++.||++|..+++|++++.++... +....++..               .|..|.|||||..+ +|||
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---------------~l~~P~GLAvD~~~~~LY~  487 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------DIQAPDGLAVDWIHSNIYW  487 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---------------SCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---------------CCCCcceeeeeecCCcEEE
Confidence            35799999998 788999999999999999885311 223344332               37799999999754 7999


Q ss_pred             EeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceee
Q 013321           97 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSD  173 (445)
Q Consensus        97 AD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn-~rIr~i~l~~~~~~~  173 (445)
                      +|..+++|.+++.+|  ..++..                ..+..|.+|++....|.||++|.++ ++|+++++++.....
T Consensus       488 tD~~~~~I~v~~ldG~~~~~l~~----------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          488 TDSVLGTVSVADTKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             EETTTTEEEEEETTSSSEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             EecCCCeEEEEeCCCCeEEEEEe----------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            999999999999988  233321                1356799998555569999999987 999999999876544


Q ss_pred             c--CCCCccceEEEEec
Q 013321          174 N--YDDTFHLGIFVLVA  188 (445)
Q Consensus       174 ~--~~~g~P~gIav~~~  188 (445)
                      .  .....|.||+++..
T Consensus       552 lv~~~l~~P~GLavD~~  568 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLL  568 (791)
T ss_dssp             EECSSCSCEEEEEEETT
T ss_pred             EEeCCCCCceEEEEecC
Confidence            3  33468999999843

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.31  E-value=4.9e-11  Score=129.14  Aligned_cols=139  Identities=13%  Similarity=0.150  Sum_probs=105.8

Q ss_pred             CCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEE
Q 013321           20 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIA   97 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVA   97 (445)
                      ...|.|||||. .++||++|+.+++|.+++.+|    ....+...              ..++.|.+||+|+ +|.||++
T Consensus       388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G----~~~~~l~~--------------~~l~~Pr~iavdp~~g~ly~t  449 (628)
T 4a0p_A          388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG----RSVGVVLK--------------GEQDRPRAVVVNPEKGYMYFT  449 (628)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS----CEEEEEEE--------------CTTCCEEEEEEETTTTEEEEE
T ss_pred             cCCcceEEeeccCCeEEEEcCCCCEEEEEECCC----CeEEEEEe--------------CCCCceeeEEEecCCCeEEEe
Confidence            35799999998 477999999999999999984    43322211              1377899999999 8999999


Q ss_pred             eCCCC--EEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee
Q 013321           98 DTMNM--AIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  173 (445)
Q Consensus        98 D~~N~--rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~  173 (445)
                      |++++  +|.+++.+|  ..++..                ..+.+|++|++...++.||++|..+++|.++++++.....
T Consensus       450 D~g~~~~~I~r~~~dG~~~~~l~~----------------~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~  513 (628)
T 4a0p_A          450 NLQERSPKIERAALDGTEREVLFF----------------SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIV  513 (628)
T ss_dssp             EEETTEEEEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ecCCCCCeEEEEeCCCCCcEEEEe----------------ccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEE
Confidence            99977  799999998  333321                1367899998655568999999999999999998865443


Q ss_pred             c--CCCCccceEEEEeccceE
Q 013321          174 N--YDDTFHLGIFVLVAAAFF  192 (445)
Q Consensus       174 ~--~~~g~P~gIav~~~a~~v  192 (445)
                      .  .....|.||++..+-.++
T Consensus       514 ~~~~~~~~P~glav~~~~ly~  534 (628)
T 4a0p_A          514 LEDSNILQPVGLTVFENWLYW  534 (628)
T ss_dssp             EECSSCSCEEEEEEETTEEEE
T ss_pred             EEcCCCCCcEEEEEECCEEEE
Confidence            3  234567888776543333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.30  E-value=6.2e-11  Score=109.95  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=98.0

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.+|+++++|+|||+|..+++|.+++...   .... ...              ...+..|.+|+++++|+|||+|..
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~~~~-~~~--------------~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---KTQT-VLP--------------FTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTC---CSCE-ECC--------------CCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCC---ceeE-eec--------------cccCCCceeEEEeCCCCEEEEECC
Confidence            5799999999999999999999999996532   1111 110              113668999999999999999999


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeecCC--CC
Q 013321          101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD--DT  178 (445)
Q Consensus       101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~~--~g  178 (445)
                      +++|.+++.++.......              ...+..|.+|+ ++++|.|||++..+++|.++++.+........  ..
T Consensus       170 ~~~i~~~~~~~~~~~~~~--------------~~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  234 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLP--------------FTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  234 (270)
T ss_dssp             GTEEEEECTTTCCEEECC--------------CSSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred             CCEEEEEecCCCceEeec--------------ccCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence            999999998773322110              11235788886 68899999999999999999988765443222  23


Q ss_pred             ccceEEEEe
Q 013321          179 FHLGIFVLV  187 (445)
Q Consensus       179 ~P~gIav~~  187 (445)
                      .|.++++..
T Consensus       235 ~p~~i~~~~  243 (270)
T 1rwi_B          235 TPLAVAVDS  243 (270)
T ss_dssp             CEEEEEECT
T ss_pred             CceeEEECC
Confidence            466666543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.29  E-value=3.6e-11  Score=129.98  Aligned_cols=134  Identities=16%  Similarity=0.120  Sum_probs=101.2

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||||. .++||++|..+++|.+++.+|.   ...++...               .|+.|.+|++|+ +|.||++|
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~---~~~~l~~~---------------~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS---LRKVLFWQ---------------ELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSCCCCEEEETTTTEEEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC---CEEEEEeC---------------CCCCCceEEEecCCCeEEEec
Confidence            5799999998 7789999999999999999852   22333321               378999999998 57899999


Q ss_pred             CC-CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeecC
Q 013321           99 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY  175 (445)
Q Consensus        99 ~~-N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~  175 (445)
                      ++ +.+|.+++.+|  ..++..                ..+.+|++|++...++.||++|..+++|+++++++.......
T Consensus       146 ~g~~~~I~r~~~dG~~~~~l~~----------------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~  209 (619)
T 3s94_A          146 WGEVPKIERAGMDGSSRFIIIN----------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV  209 (619)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC----------------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---
T ss_pred             cCCCCEEEEEECCCCceEEEEe----------------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE
Confidence            87 68999999988  333321                136789999865567999999999999999999885543322


Q ss_pred             --CCCccceEEEEec
Q 013321          176 --DDTFHLGIFVLVA  188 (445)
Q Consensus       176 --~~g~P~gIav~~~  188 (445)
                        ....|.||++...
T Consensus       210 ~~~~~~P~gi~~~~~  224 (619)
T 3s94_A          210 KGSLPHPFALTLFED  224 (619)
T ss_dssp             ------CCCEEESSS
T ss_pred             eCCCCCceEEEEeCC
Confidence              3456888887654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.28  E-value=3.9e-10  Score=105.14  Aligned_cols=135  Identities=15%  Similarity=0.223  Sum_probs=100.8

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ...|.+|+++++|+|||++..++.|.+++.+    +++..+...              ..+..|.+|++|++|+|||++.
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITNT----GKLEEYPLP--------------TNAAAPVGITSGNDGALWFVEI  206 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECTT----CCEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECCC----CcEEEeeCC--------------CCCCCcceEEECCCCCEEEEcc
Confidence            4679999999999999999999999999986    444443211              1256899999999999999999


Q ss_pred             CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec--CCC
Q 013321          100 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDD  177 (445)
Q Consensus       100 ~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~--~~~  177 (445)
                      .+++|.+++.+|.......              ...+..|.+|+ ++++|.|||++.++++|.++++.+....+.  ...
T Consensus       207 ~~~~i~~~~~~g~~~~~~~--------------~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~  271 (300)
T 2qc5_A          207 MGNKIGRITTTGEISEYDI--------------PTPNARPHAIT-AGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTEN  271 (300)
T ss_dssp             TTTEEEEECTTCCEEEEEC--------------SSTTCCEEEEE-ECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTT
T ss_pred             CCCEEEEEcCCCcEEEEEC--------------CCCCCCceEEE-ECCCCCEEEeccCCCeEEEECCCCcEEEEECCccC
Confidence            9999999998774332110              01245688886 688999999999999999999865443331  123


Q ss_pred             CccceEEEEe
Q 013321          178 TFHLGIFVLV  187 (445)
Q Consensus       178 g~P~gIav~~  187 (445)
                      ..|.+|++..
T Consensus       272 ~~~~~i~~~~  281 (300)
T 2qc5_A          272 AEPHGITFGK  281 (300)
T ss_dssp             CCCCCEEECT
T ss_pred             CccceeEeCC
Confidence            4566776653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.27  E-value=4.3e-11  Score=111.07  Aligned_cols=115  Identities=24%  Similarity=0.386  Sum_probs=90.2

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.+|+++++|+|||++..+++|.+++.++.    ......              ...+..|.+|++|++|+|||++..
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~----~~~~~~--------------~~~~~~p~~i~~d~~g~l~v~~~~  211 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN----NQVVLP--------------FTDITAPWGIAVDEAGTVYVTEHN  211 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTC----CEEECC--------------CSSCCSEEEEEECTTCCEEEEETT
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCC----ceEeec--------------ccCCCCceEEEECCCCCEEEEECC
Confidence            47999999999999999999999999998742    221111              012578999999999999999999


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      +++|.+++.++.......              ...+..|.+|+ ++++|.|||+|.++++|++|++..
T Consensus       212 ~~~v~~~~~~~~~~~~~~--------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          212 TNQVVKLLAGSTTSTVLP--------------FTGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             TSCEEEECTTCSCCEECC--------------CCSCSCEEEEE-ECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCcEEEEcCCCCcceeec--------------cCCCCCceeEE-ECCCCCEEEEECCCCEEEEEcCCC
Confidence            999999998873222110              11246788886 688999999999999999999765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.21  E-value=3.7e-11  Score=131.47  Aligned_cols=134  Identities=17%  Similarity=0.149  Sum_probs=100.1

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.||||+. .|+|||+|..+++|.++++++.   ...+++..               .+..|.||++|+ .|.|||+|
T Consensus       453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~---~~~~l~~~---------------~~~~P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------QGSKPRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             --CCCEECCCSSSBCEECCTTTSCEEEEBSSSC---CEEEECCC---------------SSCCCCCEECCSSSSCCEECC
T ss_pred             CCcceEEEEeeCCcEEEEeccCCeEEEEecCCC---ceEEEEeC---------------CCCCcceEEEccCCCcEEEcc
Confidence            4799999995 7899999999999999999842   23333221               367899999998 67899999


Q ss_pred             CCC-CEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeecC
Q 013321           99 TMN-MAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY  175 (445)
Q Consensus        99 ~~N-~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~  175 (445)
                      +++ ++|.+++.+|.  .++.                ...|..|++|++....+.|||+|..+++|+++++++.......
T Consensus       515 ~~~~~~I~~~~~dG~~~~~l~----------------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~  578 (699)
T 1n7d_A          515 WGTPAKIKKGGLNGVDIYSLV----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  578 (699)
T ss_dssp             CSSSCCEEBCCSSSCCCCEES----------------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred             cCCCCeEEEEeCCCCCeeEEE----------------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence            886 89999998872  2221                1136789999853356899999999999999999875433321


Q ss_pred             ----CCCccceEEEEec
Q 013321          176 ----DDTFHLGIFVLVA  188 (445)
Q Consensus       176 ----~~g~P~gIav~~~  188 (445)
                          ....|.+|++...
T Consensus       579 ~~~~~~~~P~glavd~~  595 (699)
T 1n7d_A          579 EDEKRLAHPFSLAVFED  595 (699)
T ss_dssp             CCSSSCSSCCCCEEETT
T ss_pred             ecCCcCCCceEeEEECC
Confidence                2356888888764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.21  E-value=1.6e-09  Score=101.07  Aligned_cols=135  Identities=11%  Similarity=0.132  Sum_probs=100.3

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      +..|.+|+++++|+|||++..++.|.+++.+    |++..+...              ..+..|.+|++|++|+|||++.
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD----GTIYEYDLP--------------NKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEECTT----SCEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCCccceECCCCCEEEEccCCCeEEEECCC----CCEEEccCC--------------CCCCCceeEEECCCCCEEEEec
Confidence            3679999999999999999989999999987    444433211              0245899999999999999999


Q ss_pred             CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec--CCC
Q 013321          100 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDD  177 (445)
Q Consensus       100 ~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~--~~~  177 (445)
                      .+++|.+++.+|..+....              ...+..|.+|+ ++++|.|||++..+++|.++++.+......  ...
T Consensus       165 ~~~~i~~~~~~g~~~~~~~--------------~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~  229 (300)
T 2qc5_A          165 QNNSIGRITNTGKLEEYPL--------------PTNAAAPVGIT-SGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPN  229 (300)
T ss_dssp             TTTEEEEECTTCCEEEEEC--------------SSTTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTT
T ss_pred             CCCeEEEECCCCcEEEeeC--------------CCCCCCcceEE-ECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCC
Confidence            9999999998774332110              11245688886 688999999999999999999865443331  223


Q ss_pred             CccceEEEEe
Q 013321          178 TFHLGIFVLV  187 (445)
Q Consensus       178 g~P~gIav~~  187 (445)
                      ..|.+|++..
T Consensus       230 ~~~~~i~~d~  239 (300)
T 2qc5_A          230 ARPHAITAGK  239 (300)
T ss_dssp             CCEEEEEECS
T ss_pred             CCceEEEECC
Confidence            4566666654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.21  E-value=1.5e-10  Score=112.39  Aligned_cols=135  Identities=14%  Similarity=0.101  Sum_probs=96.5

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.||++++ +|+|||+|.. +.|+++++++   +.+..++...       .+    ..++.|++|++|+ +|+|||+|
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~---g~~~~~~~~~-------~~----~~~~~p~~i~~d~~~G~l~v~d  144 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEG---GHATQLATSV-------DG----VPFKWLYAVTVDQRTGIVYFTD  144 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETT-TEEEEECTTC---EECEEEESEE-------TT----EECSCEEEEEECTTTCCEEEEE
T ss_pred             CCCceEEEcCCCCcEEEEECC-CCEEEEeCCC---CEEEEecccC-------CC----CcccccceEEEecCCCEEEEEC
Confidence            4699999997 8999999986 4599998873   4455554321       11    2477899999999 99999999


Q ss_pred             CCC-----------------CEEEEEcCC-Cc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCC
Q 013321           99 TMN-----------------MAIRKISDT-GV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGN  158 (445)
Q Consensus        99 ~~N-----------------~rIrkfd~d-Gv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn  158 (445)
                      ..+                 ++|.++|.+ +. ..+.                 ..+..|++|+ ++++| .|||+|..+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-----------------~~~~~p~gia-~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-----------------KELHVPGGAE-VSADSSFVLVAEFLS  206 (322)
T ss_dssp             SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-----------------EEESCCCEEE-ECTTSSEEEEEEGGG
T ss_pred             CcccccccccceehcccCCCceEEEEeCCCCEEEEec-----------------cCCccCcceE-ECCCCCEEEEEeCCC
Confidence            763                 679999875 42 2221                 1245788986 57777 599999999


Q ss_pred             CeEEEEECCCCc----eeecCCCCccceEEEEecc
Q 013321          159 QAIREIQLHDDD----CSDNYDDTFHLGIFVLVAA  189 (445)
Q Consensus       159 ~rIr~i~l~~~~----~~~~~~~g~P~gIav~~~a  189 (445)
                      ++|++|++++..    .......+ |.+|+++..+
T Consensus       207 ~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G  240 (322)
T 2fp8_A          207 HQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG  240 (322)
T ss_dssp             TEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS
T ss_pred             CeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC
Confidence            999999987521    11111223 8888776543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.17  E-value=2.8e-09  Score=99.28  Aligned_cols=133  Identities=14%  Similarity=0.184  Sum_probs=97.5

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      +..|.+|+++++|+|||++..++.|.+++.+    +++..+...              ..+..|.+|++|++|+|||++.
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~  201 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITES----GDITEFKIP--------------TPASGPVGITKGNDDALWFVEI  201 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcCC----CcEEEeeCC--------------CCCCcceeEEECCCCCEEEEcc
Confidence            4579999999999999999989999999985    455443221              1256799999999999999999


Q ss_pred             CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec--CCC
Q 013321          100 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDD  177 (445)
Q Consensus       100 ~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~--~~~  177 (445)
                      .+++|.+++.+|.......              ...+..|.+|+ ++++|.|||++..+++|.++++.+......  ...
T Consensus       202 ~~~~i~~~~~~g~~~~~~~--------------~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~  266 (299)
T 2z2n_A          202 IGNKIGRITTSGEITEFKI--------------PTPNARPHAIT-AGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKS  266 (299)
T ss_dssp             TTTEEEEECTTCCEEEEEC--------------SSTTCCEEEEE-ECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSS
T ss_pred             CCceEEEECCCCcEEEEEC--------------CCCCCCceeEE-ECCCCCEEEeccCCceEEEECCCCceEEEeCCCCC
Confidence            9999999998774322100              01245688886 688999999999999999999865333221  122


Q ss_pred             CccceEEE
Q 013321          178 TFHLGIFV  185 (445)
Q Consensus       178 g~P~gIav  185 (445)
                      ..|.++++
T Consensus       267 ~~~~~i~~  274 (299)
T 2z2n_A          267 AEPHGICF  274 (299)
T ss_dssp             CCEEEEEE
T ss_pred             CccceEEe
Confidence            34555555

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.13  E-value=1.8e-09  Score=102.53  Aligned_cols=148  Identities=14%  Similarity=0.136  Sum_probs=106.8

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcc
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK   84 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~   84 (445)
                      .+..++.+..+   ...|.+++++++|+ ||++|..+++|.++++++   + ...+...                ...|.
T Consensus        16 ~~~~~~~l~~~---~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---~-~~~~~~~----------------~~~~~   72 (296)
T 3e5z_A           16 AGAEARRLADG---FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---Q-LSPEMHP----------------SHHQN   72 (296)
T ss_dssp             TTCCCEEEECC---CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---C-EEEEESS----------------CSSEE
T ss_pred             CCCcEEEEecC---CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---C-eEEEECC----------------CCCcc
Confidence            45556666653   34699999999998 999999999999999984   3 4443321                23689


Q ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC------
Q 013321           85 GLAVDDRGNIYIADTMNMAIRKISD-TGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR------  156 (445)
Q Consensus        85 GIavD~dG~LYVAD~~N~rIrkfd~-dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~------  156 (445)
                      +|+++++|+|||++..+++|.++|. +|. ..+....            ....+..|.+++ ++++|+|||+|.      
T Consensus        73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~------------~~~~~~~~~~i~-~d~~G~l~vtd~~~g~~~  139 (296)
T 3e5z_A           73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF------------EGKKLNSPNDVC-LAPDGSLWFSDPTYGIDK  139 (296)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE------------TTEECCCCCCEE-ECTTSCEEEEECSHHHHC
T ss_pred             eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc------------CCCCCCCCCCEE-ECCCCCEEEECCcccccc
Confidence            9999999999999999999999997 674 3332111            112356788886 689999999975      


Q ss_pred             -----------CCCeEEEEECCCCceeecCCCCccceEEEEecc
Q 013321          157 -----------GNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAA  189 (445)
Q Consensus       157 -----------gn~rIr~i~l~~~~~~~~~~~g~P~gIav~~~a  189 (445)
                                 .+++|++++..+...........|.++++....
T Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg  183 (296)
T 3e5z_A          140 PEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSG  183 (296)
T ss_dssp             GGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTS
T ss_pred             ccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCC
Confidence                       246999999875444444455667777765443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.13  E-value=2.7e-09  Score=103.33  Aligned_cols=113  Identities=19%  Similarity=0.165  Sum_probs=84.7

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      +..|.+|+++++|+|||+|..+++|++++++    +....++..+                ..|.||+++++|+|||||.
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~----g~~~~~~~~~----------------~~p~gia~~~dG~l~vad~   90 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPD----GNQQIHATVE----------------GKVSGLAFTSNGDLVATGW   90 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEEECS----------------SEEEEEEECTTSCEEEEEE
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCC----CceEEEEeCC----------------CCceeEEEcCCCcEEEEec
Confidence            4689999999999999999999999999987    3444443321                1599999999999999997


Q ss_pred             CCC--EEEEEc-CCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          100 MNM--AIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       100 ~N~--rIrkfd-~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      .++  +|.+++ .+| +..++...               ....|.+++ +..++.+||+|..+++|++++..+
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~---------------~~~~~~g~~-~~~~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLP---------------DAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECT---------------TCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTT
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCC---------------CccccCccc-ccCCCcEEEEECCCCeEEEEeCCC
Confidence            753  588887 556 44433210               122355664 567778999998889999999765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.11  E-value=8.1e-09  Score=96.13  Aligned_cols=135  Identities=13%  Similarity=0.184  Sum_probs=98.7

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      +..|.+|+++++|.|||++..++.|.+++++    +.+..+...              .....|.+|++|++|+|||++.
T Consensus        98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~----g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           98 DSAPYGITEGPNGDIWFTEMNGNRIGRITDD----GKIREYELP--------------NKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEECS--------------STTCCEEEEEECTTSCEEEEET
T ss_pred             CCCceeeEECCCCCEEEEecCCceEEEECCC----CCEEEecCC--------------CCCCCCceEEEcCCCCEEEEeC
Confidence            4579999999999999999989999999985    444443321              0245799999999999999999


Q ss_pred             CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec--CCC
Q 013321          100 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDD  177 (445)
Q Consensus       100 ~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~--~~~  177 (445)
                      .++.|.++|.+|.......              ...+..|.+|+ ++++|.|||++..++.|.++++.+......  ...
T Consensus       160 ~~~~i~~~~~~g~~~~~~~--------------~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~  224 (299)
T 2z2n_A          160 QNNAIGRITESGDITEFKI--------------PTPASGPVGIT-KGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPN  224 (299)
T ss_dssp             TTTEEEEECTTCCEEEEEC--------------SSTTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTT
T ss_pred             CCCEEEEEcCCCcEEEeeC--------------CCCCCcceeEE-ECCCCCEEEEccCCceEEEECCCCcEEEEECCCCC
Confidence            9999999999774332100              01234678886 688899999999999999999854433221  122


Q ss_pred             CccceEEEEe
Q 013321          178 TFHLGIFVLV  187 (445)
Q Consensus       178 g~P~gIav~~  187 (445)
                      ..|.++++..
T Consensus       225 ~~~~~i~~~~  234 (299)
T 2z2n_A          225 ARPHAITAGA  234 (299)
T ss_dssp             CCEEEEEECS
T ss_pred             CCceeEEECC
Confidence            4566666653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.11  E-value=3.7e-10  Score=123.56  Aligned_cols=127  Identities=21%  Similarity=0.263  Sum_probs=92.5

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP   83 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdp-dG~LYVaDs~n-~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P   83 (445)
                      +|....+++..  .+..|.+|||++ .|.||++|.++ ++|.+++++|.    ...+...              ..|..|
T Consensus       483 dg~~~~~l~~~--~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~----~~~~l~~--------------~~l~~P  542 (699)
T 1n7d_A          483 KGVKRKTLFRE--QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVT--------------ENIQWP  542 (699)
T ss_dssp             SSCCEEEECCC--SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC----CCCEESC--------------SSCSSC
T ss_pred             CCCceEEEEeC--CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC----CeeEEEe--------------CCCCCc
Confidence            34444444432  235799999998 68899999876 89999998842    2211111              147899


Q ss_pred             ceEEEcC-CCCEEEEeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCe
Q 013321           84 KGLAVDD-RGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA  160 (445)
Q Consensus        84 ~GIavD~-dG~LYVAD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~r  160 (445)
                      +|||+|+ .+.|||+|+.+++|.+++.+|  ..++...              ...+..|.+|++ +. +.|||+|.++++
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~--------------~~~~~~P~glav-d~-~~lywtd~~~~~  606 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAV-FE-DKVFWTDIINEA  606 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC--------------SSSCSSCCCCEE-ET-TEEEEECSTTTC
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec--------------CCcCCCceEeEE-EC-CEEEEEeCCCCe
Confidence            9999997 577999999999999999887  3343211              124567889874 54 489999999999


Q ss_pred             EEEEECCC
Q 013321          161 IREIQLHD  168 (445)
Q Consensus       161 Ir~i~l~~  168 (445)
                      |+++++..
T Consensus       607 V~~~d~~~  614 (699)
T 1n7d_A          607 IFSANRLT  614 (699)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEccC
Confidence            99999643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.11  E-value=7.3e-10  Score=107.52  Aligned_cols=118  Identities=10%  Similarity=0.025  Sum_probs=86.8

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ..|.||+++++|+ |||+|+.+++|++++.++...+....++.                 +..|.||++|++|+||||+.
T Consensus       185 ~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-----------------~~gP~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-----------------IPNPGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-----------------CSSEEEEEECTTSCEEEEEE
T ss_pred             ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-----------------CCCCCCeEECCCCCEEEEec
Confidence            5799999999986 99999999999999987543333333321                 11299999999999999997


Q ss_pred             C----------CCEEEEEcCCCcEEE-ecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          100 M----------NMAIRKISDTGVTTI-AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       100 ~----------N~rIrkfd~dGv~ti-aGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      .          +++|.+||.+|..+. ....        ++    ..+..|.+++.  .++.|||++..+++|.+|++..
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~--------~g----~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEFGNILEVIPLP--------PP----FAGEHFEQIQE--HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTTSCEEEEEECC--------TT----TTTSCCCEEEE--ETTEEEEECSSCSEEEEEEC--
T ss_pred             CcccccccCCCccEEEEECCCCCEEEEEECC--------CC----CccccceEEEE--eCCEEEEeecCCCceEEEeccc
Confidence            6          688999999884322 1111        00    12667787753  5789999999999999999865


Q ss_pred             C
Q 013321          169 D  169 (445)
Q Consensus       169 ~  169 (445)
                      .
T Consensus       314 ~  314 (322)
T 2fp8_A          314 K  314 (322)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.04  E-value=4.2e-09  Score=101.38  Aligned_cols=145  Identities=12%  Similarity=0.119  Sum_probs=103.7

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321            7 GYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus         7 G~~v~tv~~Gs~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      +..++.+..+.   ..+.|++++++|+ ||++|..+++|++++.+    |.+..+...                -..|.+
T Consensus        34 ~~~~~~l~~~~---~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~----g~~~~~~~~----------------~~~~~g   90 (305)
T 3dr2_A           34 DARLLTLYDQA---TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED----GTVDVLLDA----------------TAFTNG   90 (305)
T ss_dssp             TCCCEEEECCC---SSEEEEEEEGGGTEEEEEETTTTEEEEEETT----SCEEEEEES----------------CSCEEE
T ss_pred             CCceEEEecCC---cCccCCeEeCCCCEEEEEECCCCEEEEEeCC----CCEEEEeCC----------------CCccce
Confidence            44566776643   4589999999887 99999999999999886    444444321                236899


Q ss_pred             EEEcCCCCEEEEeCCCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC--------
Q 013321           86 LAVDDRGNIYIADTMNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR--------  156 (445)
Q Consensus        86 IavD~dG~LYVAD~~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~--------  156 (445)
                      +++|++|+|||++..+++|.+++.+|. ..++...            ....++.|++++ ++++|+|||+|.        
T Consensus        91 l~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~------------~~~~~~~~~~i~-~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           91 NAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRY------------AGKRLNSPNDLI-VARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTSCEEEEECEE------------TTEECSCCCCEE-ECTTSCEEEECCSGGGSCGG
T ss_pred             eeECCCCCEEEEECCCCEEEEECCCCCEEEEEecc------------CCCccCCCCCEE-ECCCCCEEEeCcCCCccccc
Confidence            999999999999999999999998884 3332211            112467789986 689999999974        


Q ss_pred             ---------CCCeEEEEECCCCc-eeecCCCCccceEEEEec
Q 013321          157 ---------GNQAIREIQLHDDD-CSDNYDDTFHLGIFVLVA  188 (445)
Q Consensus       157 ---------gn~rIr~i~l~~~~-~~~~~~~g~P~gIav~~~  188 (445)
                               ..+.|+++++.+.. .... ....|.++++...
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spd  198 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPD  198 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTT
T ss_pred             cccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCC
Confidence                     24689999985433 2222 3445666666443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.01  E-value=9.7e-09  Score=97.42  Aligned_cols=137  Identities=15%  Similarity=0.174  Sum_probs=98.5

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC-
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT-   99 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~-   99 (445)
                      ..|.+|+++++|+|||++..+++|.+++...   |++..+.....           ...++.|.+|++|++|+|||+|. 
T Consensus        69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~---g~~~~~~~~~~-----------~~~~~~~~~i~~d~~G~l~vtd~~  134 (296)
T 3e5z_A           69 HHQNGHCLNKQGHLIACSHGLRRLERQREPG---GEWESIADSFE-----------GKKLNSPNDVCLAPDGSLWFSDPT  134 (296)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTEEEEECSTT---CCEEEEECEET-----------TEECCCCCCEEECTTSCEEEEECS
T ss_pred             CCcceeeECCCCcEEEEecCCCeEEEEcCCC---CcEEEEeeccC-----------CCCCCCCCCEEECCCCCEEEECCc
Confidence            4699999999999999999889999999842   55555543211           12467899999999999999986 


Q ss_pred             ----------------CCCEEEEEcCCCcE-EEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEE
Q 013321          100 ----------------MNMAIRKISDTGVT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR  162 (445)
Q Consensus       100 ----------------~N~rIrkfd~dGv~-tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr  162 (445)
                                      ..++|.+++.+|.. .+..                 .+..|.+++ .+++|.++|+|..+++|+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-----------------~~~~~~gi~-~s~dg~~lv~~~~~~~i~  196 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIR-----------------DRVKPNGLA-FLPSGNLLVSDTGDNATH  196 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEEC-----------------CCSSEEEEE-ECTTSCEEEEETTTTEEE
T ss_pred             cccccccccccccccCCCcEEEEECCCCCEEEeec-----------------CCCCCccEE-ECCCCCEEEEeCCCCeEE
Confidence                            24689999987733 3211                 234677886 588887779999999999


Q ss_pred             EEECCC-Cce-----eecCCCCccceEEEEecc
Q 013321          163 EIQLHD-DDC-----SDNYDDTFHLGIFVLVAA  189 (445)
Q Consensus       163 ~i~l~~-~~~-----~~~~~~g~P~gIav~~~a  189 (445)
                      ++++.. ...     ......+.|.++++...+
T Consensus       197 ~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          197 RYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             EEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred             EEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence            999862 112     112234567777776543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.00  E-value=1.3e-08  Score=98.01  Aligned_cols=136  Identities=17%  Similarity=0.239  Sum_probs=97.5

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC-
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT-   99 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~-   99 (445)
                      ..|.+++++++|+|||++..+++|.+++.+    |++..++....           ...++.|++|+++++|+|||+|. 
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~----g~~~~~~~~~~-----------~~~~~~~~~i~~d~dG~l~~td~~  150 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD----GQAHLLVGRYA-----------GKRLNSPNDLIVARDGAIWFTDPP  150 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEECEET-----------TEECSCCCCEEECTTSCEEEECCS
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC----CCEEEEEeccC-----------CCccCCCCCEEECCCCCEEEeCcC
Confidence            469999999999999999988999999987    55665553211           12478899999999999999985 


Q ss_pred             ----------------CCCEEEEEcC-CC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCC--
Q 013321          100 ----------------MNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGN--  158 (445)
Q Consensus       100 ----------------~N~rIrkfd~-dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn--  158 (445)
                                      ....|.+++. +| +..+.                  .+..|++++ .++++ .|||+|..+  
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------------------~~~~p~gl~-~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------------------DLDHPNGLA-FSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------------------EESSEEEEE-ECTTSSEEEEEECCC--
T ss_pred             CCccccccccccccccCCCeEEEEcCCCCcEEEEe------------------cCCCCcceE-EcCCCCEEEEEecCCcC
Confidence                            1367999997 45 33332                  234678886 57777 599999974  


Q ss_pred             ---CeEEEEECCCCcee-----ecCCCCccceEEEEeccc
Q 013321          159 ---QAIREIQLHDDDCS-----DNYDDTFHLGIFVLVAAA  190 (445)
Q Consensus       159 ---~rIr~i~l~~~~~~-----~~~~~g~P~gIav~~~a~  190 (445)
                         ++|+++++.+....     .....+.|.+|+++..+.
T Consensus       212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~  251 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW  251 (305)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred             CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence               89999997653211     112345677777765433

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.99  E-value=1.5e-08  Score=97.96  Aligned_cols=143  Identities=13%  Similarity=0.038  Sum_probs=97.0

Q ss_pred             CCceEEEEcCCCcEEEEeCCCC--eEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           21 MEPFSVAVSPSGELLVLDSENS--NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~--rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      ..|.+|+++++|+|||+|..++  +|++++..   .|++..++..+              ....|.|+++.+++.+||+|
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~---~g~~~~~~~~~--------------~~~~~~g~~~~~~~~~~v~d  134 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKS---DGTVETLLTLP--------------DAIFLNGITPLSDTQYLTAD  134 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECT---TSCEEEEEECT--------------TCSCEEEEEESSSSEEEEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCC---CCeEEEEEeCC--------------CccccCcccccCCCcEEEEE
Confidence            4699999999999999997654  58888754   26666665432              13467899998888899999


Q ss_pred             CCCCEEEEEcCCC-c-EEE-ecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce----
Q 013321           99 TMNMAIRKISDTG-V-TTI-AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC----  171 (445)
Q Consensus        99 ~~N~rIrkfd~dG-v-~ti-aGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~----  171 (445)
                      ..+++|.++|.++ . .+. ..+. .. .     ......|..|++|  ....+.|||+|+.+++|++|++++...    
T Consensus       135 ~~~g~i~~~d~~~~~~~v~~~~~~-~~-~-----~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~  205 (306)
T 2p4o_A          135 SYRGAIWLIDVVQPSGSIWLEHPM-LA-R-----SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP  205 (306)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECGG-GS-C-----SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred             CCCCeEEEEeCCCCcEeEEEECCc-cc-c-----ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence            9999999999764 1 221 1110 00 0     0112346678887  334568999999999999999875211    


Q ss_pred             eecCCCCccceEEEEecc
Q 013321          172 SDNYDDTFHLGIFVLVAA  189 (445)
Q Consensus       172 ~~~~~~g~P~gIav~~~a  189 (445)
                      ........|.+|++...+
T Consensus       206 ~~~~~~~~P~gi~vd~dG  223 (306)
T 2p4o_A          206 EIFVEQTNIDDFAFDVEG  223 (306)
T ss_dssp             EEEEESCCCSSEEEBTTC
T ss_pred             EEEeccCCCCCeEECCCC
Confidence            111112468888887543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.98  E-value=1.7e-08  Score=96.86  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=84.7

Q ss_pred             CCceEEEEcCCCcEEEEeC-----------CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321           21 MEPFSVAVSPSGELLVLDS-----------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD   89 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs-----------~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD   89 (445)
                      ..|++|+++++|+|||++.           ..++|++++.+    +.+..+..                .+..|+||+++
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----g~~~~~~~----------------~~~~pngi~~s  157 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----HHVKKYFD----------------QVDISNGLDWS  157 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----SCEEEEEE----------------EESBEEEEEEC
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----CCEEEEee----------------ccccccceEEc
Confidence            5689999999999999984           34689999876    44444432                25679999999


Q ss_pred             CCCC-EEEEeCCCCEEEEEc---CCCcEE----EecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321           90 DRGN-IYIADTMNMAIRKIS---DTGVTT----IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI  161 (445)
Q Consensus        90 ~dG~-LYVAD~~N~rIrkfd---~dGv~t----iaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI  161 (445)
                      ++|. |||+|+.+++|.+++   .+|...    +....              .....|.+++ +|++|+|||++.++++|
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~--------------~~~~~p~g~~-~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE--------------KEEQIPDGMC-IDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC--------------GGGCEEEEEE-EBTTSCEEEEEETTTEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC--------------CCCCCCCeeE-ECCCCCEEEEEcCCCEE
Confidence            9997 999999999999997   345211    11000              0113577775 79999999999999999


Q ss_pred             EEEECCC
Q 013321          162 REIQLHD  168 (445)
Q Consensus       162 r~i~l~~  168 (445)
                      .+|+++.
T Consensus       223 ~~~d~~t  229 (297)
T 3g4e_A          223 IRLDPVT  229 (297)
T ss_dssp             EEECTTT
T ss_pred             EEEcCCC
Confidence            9999873

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.98  E-value=1.1e-08  Score=102.35  Aligned_cols=133  Identities=20%  Similarity=0.250  Sum_probs=92.8

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      ..+.++.++.+   ...|.+|+++++|+|||+|.. ++|++++ +    |....++..+..          ...+..|.|
T Consensus        19 ~~~~~~~va~~---l~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~----g~~~~~~~~~v~----------~~g~~~p~g   79 (352)
T 2ism_A           19 QGLRVEEVVGG---LEVPWALAFLPDGGMLIAERP-GRIRLFR-E----GRLSTYAELSVY----------HRGESGLLG   79 (352)
T ss_dssp             -CCCEEEEECC---CSCEEEEEECTTSCEEEEETT-TEEEEEE-T----TEEEEEEECCCC----------CSTTCSEEE
T ss_pred             CCcEEEEEECC---CCCceEEEEcCCCeEEEEeCC-CeEEEEE-C----CCccEeecceEe----------ecCCCCcee
Confidence            35677788764   457999999999999999976 8999998 5    455555543210          112568999


Q ss_pred             EEEcCC----CCEEEEeCCC-----CEEEEEcCCCc-----EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeE
Q 013321           86 LAVDDR----GNIYIADTMN-----MAIRKISDTGV-----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL  151 (445)
Q Consensus        86 IavD~d----G~LYVAD~~N-----~rIrkfd~dGv-----~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~L  151 (445)
                      |+++++    |.|||+++.+     ++|.+++.++-     .++..+.          +........|.+|+ ++++|.|
T Consensus        80 ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~----------p~~~~~~h~~~~l~-~~pdG~L  148 (352)
T 2ism_A           80 LALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGI----------PARPHGLHSGGRIA-FGPDGML  148 (352)
T ss_dssp             EEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEE----------CCCTTCCCCCCCEE-ECTTSCE
T ss_pred             EEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeC----------CCCCCCCcCCceEE-ECCCCCE
Confidence            999997    7899999865     89999986541     1111100          00011234577886 6899999


Q ss_pred             EEEECC-------------CCeEEEEECCC
Q 013321          152 LVIDRG-------------NQAIREIQLHD  168 (445)
Q Consensus       152 yVaD~g-------------n~rIr~i~l~~  168 (445)
                      ||++..             .++|.+|++++
T Consensus       149 yv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          149 YVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             EEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             EEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence            999742             36999999886

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.97  E-value=1.3e-08  Score=102.32  Aligned_cols=151  Identities=21%  Similarity=0.187  Sum_probs=102.4

Q ss_pred             cCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcc
Q 013321            5 EGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK   84 (445)
Q Consensus         5 e~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~   84 (445)
                      +.++.++.++.+   ...|.+|+++++|+|||++.. ++|++++.+    |. ..+...+..          ...+..|.
T Consensus        16 ~~~~~~~~va~~---l~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~----G~-~~~~~~~v~----------~~g~~g~~   76 (354)
T 3a9g_A           16 EWKFKISEVASD---LEVPWSIAPLGGGRYLVTERP-GRLVLISPS----GK-KLVASFDVA----------NVGEAGLL   76 (354)
T ss_dssp             CCCEEEEEEECS---CSCEEEEEEEETTEEEEEETT-TEEEEECSS----CE-EEEEECCCC----------CSTTCSEE
T ss_pred             CCCeEEEEEeCC---CCCCeEEEEcCCCeEEEEeCC-CEEEEEeCC----Cc-eEeecccee----------ecCCCcee
Confidence            567888998874   457999999999999999986 899999865    55 555443200          01245799


Q ss_pred             eEEEcCC----CCEEEEeCC---C----CEEEEEcCCCc-------EEEecCcccCCCCCCCCCccCcccCCCceEEEEC
Q 013321           85 GLAVDDR----GNIYIADTM---N----MAIRKISDTGV-------TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG  146 (445)
Q Consensus        85 GIavD~d----G~LYVAD~~---N----~rIrkfd~dGv-------~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd  146 (445)
                      ||+++++    |.|||++..   +    ++|.+++.++.       .++.-+.          +  ......|.+|+ ++
T Consensus        77 gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~----------~--~~~~h~~~~l~-~~  143 (354)
T 3a9g_A           77 GLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGI----------P--GAYIHNGGRIR-FG  143 (354)
T ss_dssp             EEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEE----------E--CCSSCCCCCEE-EC
T ss_pred             eEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcC----------C--CCCCcCCceEE-EC
Confidence            9999996    889999974   3    78999985431       1111100          0  11234577776 68


Q ss_pred             CCCeEEEEECC-------------CCeEEEEECCCCc---------eeecCCCCccceEEEEe
Q 013321          147 SSCSLLVIDRG-------------NQAIREIQLHDDD---------CSDNYDDTFHLGIFVLV  187 (445)
Q Consensus       147 ~dG~LyVaD~g-------------n~rIr~i~l~~~~---------~~~~~~~g~P~gIav~~  187 (445)
                      ++|.|||++..             +++|.+|++++..         ..+..+.-.|.||++..
T Consensus       144 pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~  206 (354)
T 3a9g_A          144 PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHR  206 (354)
T ss_dssp             TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECT
T ss_pred             CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeC
Confidence            99999999642             3689999988741         12223344567777665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.82  E-value=5.7e-08  Score=91.65  Aligned_cols=139  Identities=14%  Similarity=0.171  Sum_probs=95.3

Q ss_pred             CCceEEEEcCCCcEEEE-------eCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCC-C
Q 013321           21 MEPFSVAVSPSGELLVL-------DSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-G   92 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVa-------Ds~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G   92 (445)
                      ..|.+++++++|+|||+       +..+++|.+++...   +++..+...  ..    .+     ....|.+|+++++ |
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~--~~----~~-----~~~~~~~i~~~~~~g   83 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT---GKKTVICKP--EV----NG-----YGGIPAGCQCDRDAN   83 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT---CCEEEEECC--EE----TT-----EECCEEEEEECSSSS
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC---CcEEEEEec--cc----CC-----CCCCCceEEEecCCC
Confidence            57999999999999999       88889999999653   555544321  00    00     1357999999999 9


Q ss_pred             CEEEEeCCCCEEEEEcCCCcEEEe-cCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC-------------
Q 013321           93 NIYIADTMNMAIRKISDTGVTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-------------  158 (445)
Q Consensus        93 ~LYVAD~~N~rIrkfd~dGv~tia-Gg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn-------------  158 (445)
                      +|||++..+ +|.++|.+|..... ...           .....+..|.+|+ ++++|.|||++.++             
T Consensus        84 ~l~v~~~~~-~l~~~d~~g~~~~~~~~~-----------~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~~~~~~  150 (314)
T 1pjx_A           84 QLFVADMRL-GLLVVQTDGTFEEIAKKD-----------SEGRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEETTT-EEEEEETTSCEEECCSBC-----------TTSCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cEEEEECCC-CEEEEeCCCCEEEEEecc-----------CCCccccCCcCEE-ECCCCCEEEEecCcccccccccccccC
Confidence            999999854 89999977743321 110           0012345788886 68899999999865             


Q ss_pred             --CeEEEEECCCCceeecCCCCccceEEEE
Q 013321          159 --QAIREIQLHDDDCSDNYDDTFHLGIFVL  186 (445)
Q Consensus       159 --~rIr~i~l~~~~~~~~~~~g~P~gIav~  186 (445)
                        +.|++++.++...........|.++++.
T Consensus       151 ~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~  180 (314)
T 1pjx_A          151 KFGSIYCFTTDGQMIQVDTAFQFPNGIAVR  180 (314)
T ss_dssp             SCEEEEEECTTSCEEEEEEEESSEEEEEEE
T ss_pred             CCCeEEEECCCCCEEEeccCCCCcceEEEe
Confidence              6899998774332222223446666655

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.81  E-value=7.7e-08  Score=96.22  Aligned_cols=133  Identities=13%  Similarity=0.167  Sum_probs=82.6

Q ss_pred             CCceEEEEcCC----CcEEEEeCCC-----CeEEEEeCCCCCCCccEEEe-cCCCCcccCCCCCccCccCCCcceEEEcC
Q 013321           21 MEPFSVAVSPS----GELLVLDSEN-----SNIYKISTSLSPYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD   90 (445)
Q Consensus        21 ~~P~gIAVdpd----G~LYVaDs~n-----~rI~kid~dg~~~G~v~~va-G~~~G~~G~~dG~~~~a~Ln~P~GIavD~   90 (445)
                      ..|.||+++++    |.|||+++.+     ++|.+++.++........+. +.+.          .......|.+|++++
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~----------~~~~~h~~~~l~~~p  144 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA----------RPHGLHSGGRIAFGP  144 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC----------CTTCCCCCCCEEECT
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC----------CCCCCcCCceEEECC
Confidence            57999999997    7899999865     79999987642111222222 2210          001356789999999


Q ss_pred             CCCEEEEeCC-------------CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECC-CCeEEEEEC
Q 013321           91 RGNIYIADTM-------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDR  156 (445)
Q Consensus        91 dG~LYVAD~~-------------N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~-dG~LyVaD~  156 (445)
                      +|.|||++..             +++|.+|+.+|... ..+......+. ....-...+..|++|+ .++ +|.|||+|.
T Consensus       145 dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p-~~npf~~~~~~-~~~i~a~G~rnp~g~a-~d~~~g~l~v~d~  221 (352)
T 2ism_A          145 DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA-PGNPFLGRRGA-RPEVYSLGHRNPQGLA-WHPKTGELFSSEH  221 (352)
T ss_dssp             TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC-TTCTTTTCTTS-CTTEEEECCSEECCCE-ECTTTCCEEEEEE
T ss_pred             CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC-CCCcccCCCCC-CccEEEEcCCCcccEE-EECCCCCEEEEEc
Confidence            9999999742             36899999887210 11100000000 0000112357899997 466 899999999


Q ss_pred             CCCe--------EEEEEC
Q 013321          157 GNQA--------IREIQL  166 (445)
Q Consensus       157 gn~r--------Ir~i~l  166 (445)
                      +.++        |.++..
T Consensus       222 g~~~~~~~~~dei~~i~~  239 (352)
T 2ism_A          222 GPSGEQGYGHDEVNLIVP  239 (352)
T ss_dssp             CC------CCCEEEEECT
T ss_pred             CCCCCCCCCCeEEEEecc
Confidence            8877        666654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.80  E-value=1e-07  Score=93.72  Aligned_cols=132  Identities=14%  Similarity=0.094  Sum_probs=89.8

Q ss_pred             EEEEecCCCCCCCceEEEEcCCCcEEEEeCC--C--CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321           10 VETVFEGSKFGMEPFSVAVSPSGELLVLDSE--N--SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus        10 v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~--n--~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      ++.+....   ..|.+|+++++|+|||+...  +  .+|.+++ +    |++..+....         ......|..|.+
T Consensus         9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~----g~~~~~p~~~---------~~~~~~~~~p~g   71 (343)
T 2qe8_A            9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-Q----DGLIPFPPQS---------GNAIITFDTVLG   71 (343)
T ss_dssp             CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-T----TEEEESCCCC---------SSCCCCCSCEEE
T ss_pred             eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-C----CCeecCCCcc---------cCcccceeEeeE
Confidence            44454433   57999999999999999752  2  3889888 4    4433221110         001135889999


Q ss_pred             EEEcCCCCEEEEeCC-----CCEEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC-
Q 013321           86 LAVDDRGNIYIADTM-----NMAIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-  156 (445)
Q Consensus        86 IavD~dG~LYVAD~~-----N~rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~-  156 (445)
                      |++|++|+|||+|.+     ..+|.++|.. |.  .++.....           .......|.+|++...++.+||+|. 
T Consensus        72 v~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~-----------~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           72 IKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP-----------ITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             EEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-----------TSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             EEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-----------hcccccccceEEEecCCCEEEEEcCc
Confidence            999999999999987     5899999964 52  33322110           0112346789875435689999999 


Q ss_pred             --CCCeEEEEECCCC
Q 013321          157 --GNQAIREIQLHDD  169 (445)
Q Consensus       157 --gn~rIr~i~l~~~  169 (445)
                        .++.|.++++...
T Consensus       141 ~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A          141 PDDKAALIRVDLQTG  155 (343)
T ss_dssp             SGGGCEEEEEETTTC
T ss_pred             cCCCCeEEEEECCCC
Confidence              8899999998754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.80  E-value=5.1e-08  Score=93.57  Aligned_cols=134  Identities=11%  Similarity=0.052  Sum_probs=94.0

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC-
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT-   99 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~-   99 (445)
                      ..|.+|+++++|+|||+.  ++.|.+++.++   +++..++....+           ..++.|++|++|++|+|||++. 
T Consensus        54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~---g~~~~~~~~~~~-----------~~~~~~~di~~d~dG~l~~~~~~  117 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI--GTKFCALNWKE---QSAVVLATVDND-----------KKNNRFNDGKVDPAGRYFAGTMA  117 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE--TTEEEEEETTT---TEEEEEEECCTT-----------CSSEEEEEEEECTTSCEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEE--CCeEEEEECCC---CcEEEEEecCCC-----------CCCCCCCCEEECCCCCEEEecCC
Confidence            468999999999999997  57999999873   566665543211           1356789999999999999984 


Q ss_pred             ----------CCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC
Q 013321          100 ----------MNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH  167 (445)
Q Consensus       100 ----------~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~  167 (445)
                                ...+|.+++.+|. ..+..                 .+..|++++ .++++ .|||+|+.+++|++++.+
T Consensus       118 ~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------------~~~~pngi~-~spdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          118 EETAPAVLERHQGALYSLFPDHHVKKYFD-----------------QVDISNGLD-WSLDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             CCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------------EESBEEEEE-ECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred             cccccccccCCCcEEEEEECCCCEEEEee-----------------ccccccceE-EcCCCCEEEEecCCCCcEEEEecc
Confidence                      3458999998773 33211                 234678887 46666 699999999999999864


Q ss_pred             C--Ccee----e---cCCCCccceEEEEec
Q 013321          168 D--DDCS----D---NYDDTFHLGIFVLVA  188 (445)
Q Consensus       168 ~--~~~~----~---~~~~g~P~gIav~~~  188 (445)
                      .  ....    .   ....+.|.+++++..
T Consensus       180 ~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          180 LQTGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             TTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             CCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence            2  1111    1   112356777777654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.77  E-value=1.5e-07  Score=92.35  Aligned_cols=157  Identities=16%  Similarity=0.106  Sum_probs=97.4

Q ss_pred             CCCceEEEEcCCCcEEEEeCC-----CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCC
Q 013321           20 GMEPFSVAVSPSGELLVLDSE-----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGN   93 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~-----n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~   93 (445)
                      ...|++|++|++|+|||+|.+     .++|+++++.+   |++......+... +        .....|.+|++|+ +|.
T Consensus        66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t---g~~~~~~~~~~~~-~--------~~~~~~~~v~vd~~~g~  133 (343)
T 2qe8_A           66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN---NQLSRVIYLPPPI-T--------LSNSFVNDLAVDLIHNF  133 (343)
T ss_dssp             CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT---TEEEEEEECCTTT-S--------CTTCCCCEEEEETTTTE
T ss_pred             eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC---CeEEEEEECChhh-c--------ccccccceEEEecCCCE
Confidence            378999999999999999987     58999999863   5543333221100 0        1235789999996 578


Q ss_pred             EEEEeC---CCCEEEEEcCC-C-cEEEecCcccCCC--C--CCCCC-----ccCc----ccCCCceEEEECCCC-eEEEE
Q 013321           94 IYIADT---MNMAIRKISDT-G-VTTIAGGKWSRGV--G--HVDGP-----SEDA----KFSNDFDVVYVGSSC-SLLVI  154 (445)
Q Consensus        94 LYVAD~---~N~rIrkfd~d-G-v~tiaGg~~G~g~--G--~~dgp-----~~~a----~f~~P~gI~~vd~dG-~LyVa  154 (445)
                      +||+|.   .++.|.++|.. | ...+..+......  +  ..++.     ....    ....|++|+ ++++| .||++
T Consensus       134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia-~s~dg~~ly~~  212 (343)
T 2qe8_A          134 VYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV-LDAENEWLYLS  212 (343)
T ss_dssp             EEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE-ECTTSCEEEEE
T ss_pred             EEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE-eccCCCEEEEE
Confidence            999999   88999999964 4 3333222100000  0  00110     0000    013578887 56677 69999


Q ss_pred             ECCCCeEEEEECCC----Cc--------eeecCCCCccceEEEEecc
Q 013321          155 DRGNQAIREIQLHD----DD--------CSDNYDDTFHLGIFVLVAA  189 (445)
Q Consensus       155 D~gn~rIr~i~l~~----~~--------~~~~~~~g~P~gIav~~~a  189 (445)
                      +..+++|++++...    ..        .......+.|.|++++..+
T Consensus       213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G  259 (343)
T 2qe8_A          213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH  259 (343)
T ss_dssp             ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC
T ss_pred             eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC
Confidence            99999999998531    10        0111223468888887543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.77  E-value=9.9e-08  Score=93.32  Aligned_cols=134  Identities=9%  Similarity=0.148  Sum_probs=91.1

Q ss_pred             CCCceEEEEcCCCcEEEEeCCC----------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321           20 GMEPFSVAVSPSGELLVLDSEN----------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD   89 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n----------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD   89 (445)
                      +..|.+|+++++|++||++.++          +.|.+++..+   +++......+.              -..|.+|+++
T Consensus       171 g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t---~~v~~~~~~~~--------------g~~p~~la~~  233 (328)
T 3dsm_A          171 GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET---FTVEKQFKFKL--------------GDWPSEVQLN  233 (328)
T ss_dssp             SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT---TEEEEEEECCT--------------TCCCEEEEEC
T ss_pred             CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC---CeEEEEEecCC--------------CCCceeEEEe
Confidence            4579999999999999999876          8999999863   44443222210              1379999999


Q ss_pred             CCCC-EEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECC-CCeEEEEE----CCCCeEEE
Q 013321           90 DRGN-IYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVID----RGNQAIRE  163 (445)
Q Consensus        90 ~dG~-LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~-dG~LyVaD----~gn~rIr~  163 (445)
                      ++|. |||++.   .|.++|...-..... .      ...     .....|.+|+ +++ ++.|||++    ..+++|.+
T Consensus       234 ~d~~~lyv~~~---~v~~~d~~t~~~~~~-~------~~~-----~~~~~p~gi~-vdp~~g~lyva~~~~y~~~~~V~v  297 (328)
T 3dsm_A          234 GTRDTLYWINN---DIWRMPVEADRVPVR-P------FLE-----FRDTKYYGLT-VNPNNGEVYVADAIDYQQQGIVYR  297 (328)
T ss_dssp             TTSCEEEEESS---SEEEEETTCSSCCSS-C------SBC-----CCSSCEEEEE-ECTTTCCEEEEECTTSSSEEEEEE
T ss_pred             cCCCEEEEEcc---EEEEEECCCCceeee-e------eec-----CCCCceEEEE-EcCCCCeEEEEcccccccCCEEEE
Confidence            8665 999986   799999654211100 0      000     0145789987 565 89999999    88999999


Q ss_pred             EECCCCceeecCCCCccceEEEE
Q 013321          164 IQLHDDDCSDNYDDTFHLGIFVL  186 (445)
Q Consensus       164 i~l~~~~~~~~~~~g~P~gIav~  186 (445)
                      |++++.......-...|.+++.-
T Consensus       298 ~d~~g~~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          298 YSPQGKLIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             ECTTCCEEEEEEEEESEEEEEEE
T ss_pred             ECCCCCEEEEEEeccCcceEEEe
Confidence            99886544443333345555543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.75  E-value=8.6e-08  Score=90.45  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=84.2

Q ss_pred             CCceEEEEcCCCcEEEEeCCC---------------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321           21 MEPFSVAVSPSGELLVLDSEN---------------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n---------------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      ..|.+|+++++|+|||++..+               +.|++++.+    +++..+..                .+..|.+
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~~----------------~~~~~~~  176 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVDT----------------AFQFPNG  176 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEEE----------------EESSEEE
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC----CCEEEecc----------------CCCCcce
Confidence            469999999999999999865               689999876    44444322                1457899


Q ss_pred             EEEc----CCC-CEEEEeCCCCEEEEEcC--CCcE----EEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEE
Q 013321           86 LAVD----DRG-NIYIADTMNMAIRKISD--TGVT----TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI  154 (445)
Q Consensus        86 IavD----~dG-~LYVAD~~N~rIrkfd~--dGv~----tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVa  154 (445)
                      |+++    ++| .|||+|..+++|.+++.  +|..    .+....             ...+..|.+|+ ++++|.|||+
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-------------~~~~~~p~~i~-~d~~G~l~v~  242 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-------------GTHEGGADGMD-FDEDNNLLVA  242 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-------------CCSSCEEEEEE-EBTTCCEEEE
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-------------CCCCCCCCceE-ECCCCCEEEE
Confidence            9999    999 59999999999999984  3421    111100             00113577775 7899999999


Q ss_pred             ECCCCeEEEEECC
Q 013321          155 DRGNQAIREIQLH  167 (445)
Q Consensus       155 D~gn~rIr~i~l~  167 (445)
                      +..+++|.++++.
T Consensus       243 ~~~~~~i~~~d~~  255 (314)
T 1pjx_A          243 NWGSSHIEVFGPD  255 (314)
T ss_dssp             EETTTEEEEECTT
T ss_pred             EcCCCEEEEEcCC
Confidence            9989999999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.73  E-value=4.3e-07  Score=88.76  Aligned_cols=135  Identities=11%  Similarity=0.051  Sum_probs=95.0

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      +..|.+|+++++|.|||++..++.|.+++..+   +++......+.          ...++..|.+|++ .++.|||++.
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t---~~~~~~i~~g~----------~~~~~~~p~~i~~-~~~~lyv~~~  148 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT---YEITGYIECPD----------MDMESGSTEQMVQ-YGKYVYVNCW  148 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT---TEEEEEEECTT----------CCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC---CeEEEEEEcCC----------ccccCCCcceEEE-ECCEEEEEcC
Confidence            46799999988899999998789999999873   44432222110          0124568999999 5788999998


Q ss_pred             C-CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC----------CeEEEEE
Q 013321          100 M-NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN----------QAIREIQ  165 (445)
Q Consensus       100 ~-N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn----------~rIr~i~  165 (445)
                      + .+.|.+||...   +.++..+                  ..|.+++ ++++|.+||++.++          +.|.+|+
T Consensus       149 ~~~~~v~viD~~t~~~~~~i~~g------------------~~p~~i~-~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id  209 (328)
T 3dsm_A          149 SYQNRILKIDTETDKVVDELTIG------------------IQPTSLV-MDKYNKMWTITDGGYEGSPYGYEAPSLYRID  209 (328)
T ss_dssp             TTCCEEEEEETTTTEEEEEEECS------------------SCBCCCE-ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEEcC------------------CCccceE-EcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence            4 88999999654   2232111                  2466775 68899999999876          8999999


Q ss_pred             CCCCceee-c--CCCCccceEEEEe
Q 013321          166 LHDDDCSD-N--YDDTFHLGIFVLV  187 (445)
Q Consensus       166 l~~~~~~~-~--~~~g~P~gIav~~  187 (445)
                      +....... .  .....|.++++..
T Consensus       210 ~~t~~v~~~~~~~~g~~p~~la~~~  234 (328)
T 3dsm_A          210 AETFTVEKQFKFKLGDWPSEVQLNG  234 (328)
T ss_dssp             TTTTEEEEEEECCTTCCCEEEEECT
T ss_pred             CCCCeEEEEEecCCCCCceeEEEec
Confidence            87654332 1  1123677777764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.72  E-value=1.8e-07  Score=89.55  Aligned_cols=122  Identities=11%  Similarity=0.140  Sum_probs=86.0

Q ss_pred             CCCceEEEEcCCCcEEEEeCC------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321           20 GMEPFSVAVSPSGELLVLDSE------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN   93 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~   93 (445)
                      +..|.+|+++++|+|||++..      ++.|++++.++   +++..+..                .+..|.+|+++++|.
T Consensus       134 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~----------------~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          134 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQ----------------NISVANGIALSTDEK  194 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEE----------------EESSEEEEEECTTSS
T ss_pred             CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC---CEEEEeec----------------CCCcccceEECCCCC
Confidence            357999999999999999875      47899998763   33433321                144689999999997


Q ss_pred             -EEEEeCCCCEEEEEcC--CC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321           94 -IYIADTMNMAIRKISD--TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus        94 -LYVAD~~N~rIrkfd~--dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                       |||+|..+++|.+++.  +| ..........  .   .    ......|.+|+ ++++|.|||++.++++|+++++++.
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~--~---~----~~~~~~~~~i~-~d~~G~l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIP--Y---Y----FTGHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE--E---E----CCSSSEEEEEE-EBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEE--E---e----cCCCCCCCceE-ECCCCCEEEEEcCCCEEEEECCCCC
Confidence             9999998899999985  44 2211100000  0   0    00013567775 7899999999998999999998664


Q ss_pred             c
Q 013321          170 D  170 (445)
Q Consensus       170 ~  170 (445)
                      .
T Consensus       265 ~  265 (333)
T 2dg1_A          265 P  265 (333)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.71  E-value=7.1e-07  Score=85.40  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=86.6

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.+++++++|+||+++..++.|++++.++   +++..+....               -..|.+|+++++|+|||++..
T Consensus        45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~---~~~~~~~~~~---------------~~~~~~i~~~~dg~l~v~~~~  106 (333)
T 2dg1_A           45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPET---KEIKRPFVSH---------------KANPAAIKIHKDGRLFVCYLG  106 (333)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECS---------------SSSEEEEEECTTSCEEEEECT
T ss_pred             ccccCcEECCCCCEEEEECCCCEEEEEeCCC---CcEEEEeeCC---------------CCCcceEEECCCCcEEEEeCC
Confidence            4689999999999999999999999999874   4444433110               236899999999999999987


Q ss_pred             C----CEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC------CCeEEEEECCC
Q 013321          101 N----MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG------NQAIREIQLHD  168 (445)
Q Consensus       101 N----~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g------n~rIr~i~l~~  168 (445)
                      +    +.|.++|.++  ...+....              .....|.+++ ++++|.|||++..      +..|++++..+
T Consensus       107 ~~~~~~~i~~~d~~~~~~~~~~~~~--------------~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          107 DFKSTGGIFAATENGDNLQDIIEDL--------------STAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             TSSSCCEEEEECTTSCSCEEEECSS--------------SSCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             CCCCCceEEEEeCCCCEEEEEEccC--------------ccCCcccceE-ECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence            6    7999999766  22121100              0123577876 6889999999875      57899998765


Q ss_pred             Cc
Q 013321          169 DD  170 (445)
Q Consensus       169 ~~  170 (445)
                      ..
T Consensus       172 ~~  173 (333)
T 2dg1_A          172 RT  173 (333)
T ss_dssp             CC
T ss_pred             CE
Confidence            43

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.71  E-value=1.5e-07  Score=94.32  Aligned_cols=139  Identities=10%  Similarity=0.071  Sum_probs=90.9

Q ss_pred             eecCCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccC
Q 013321            3 KFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARM   80 (445)
Q Consensus         3 ~~e~G~~v~tv~~Gs~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~L   80 (445)
                      ..++|+.++.++.+   ...|.+|+++++|+ |||++. .++|++++.++    ... .+++.+.-         .....
T Consensus         3 ~~p~g~~~~~va~~---l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g----~~~~~~~~~~~v---------~~~g~   65 (353)
T 2g8s_A            3 MAPATVNVEVLQDK---LDHPWALAFLPDNHGMLITLR-GGELRHWQAGK----GLSAPLSGVPDV---------WAHGQ   65 (353)
T ss_dssp             ---CCSEEEEEEEE---ESSEEEEEECSTTCCEEEEET-TTEEEEEETTT----EECCCCBSCCCC---------CCSTT
T ss_pred             CCCCCcEEEEEECC---CCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCC----ceeeEecCCccc---------ccCCC
Confidence            45789999999873   35799999999999 999997 58999998763    221 22222100         00113


Q ss_pred             CCcceEEEcC----CCCEEEEeCC-------CCEEEEEcCCC-------cEEEecCcccCCCCCCCCCccCcccCCCceE
Q 013321           81 NHPKGLAVDD----RGNIYIADTM-------NMAIRKISDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV  142 (445)
Q Consensus        81 n~P~GIavD~----dG~LYVAD~~-------N~rIrkfd~dG-------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI  142 (445)
                      ..|.||++++    +|.|||+++.       .++|.+++.++       ..++.-+          .+........+.+|
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~----------~p~~~~~~h~~~~l  135 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQ----------MPKLSTGNHFGGRL  135 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEEC----------SSCCBSSSCCCCCE
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEE----------CCCCCCCcccCccE
Confidence            4678999998    5889999875       46899887432       1111110          01111223456777


Q ss_pred             EEECCCCeEEEEECC-------------CCeEEEEECCCC
Q 013321          143 VYVGSSCSLLVIDRG-------------NQAIREIQLHDD  169 (445)
Q Consensus       143 ~~vd~dG~LyVaD~g-------------n~rIr~i~l~~~  169 (445)
                      + .+++|.|||+...             .++|.+|++++.
T Consensus       136 ~-~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A          136 V-FDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             E-ECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             E-ECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            6 6899999999633             368999998864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.70  E-value=4.2e-07  Score=91.67  Aligned_cols=137  Identities=17%  Similarity=0.145  Sum_probs=88.6

Q ss_pred             CCceEEEE---cCCCcEEE-EeC------------CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcc
Q 013321           21 MEPFSVAV---SPSGELLV-LDS------------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK   84 (445)
Q Consensus        21 ~~P~gIAV---dpdG~LYV-aDs------------~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~   84 (445)
                      ..|.||.+   |++|.||| +|.            +.+.|.+++++++..++....+.-..-..+..  ......+..|+
T Consensus        63 ~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~--~~~g~~~~~~n  140 (334)
T 2p9w_A           63 QQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFE--KKAGKRPFGVV  140 (334)
T ss_dssp             EEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHH--HHHSSCCEEEE
T ss_pred             ceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccc--ccccccccCCc
Confidence            46899999   78999998 562            35789999987433344444443210000000  00000234689


Q ss_pred             eEEEcCCCCEEEEeCCC-CEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEE
Q 013321           85 GLAVDDRGNIYIADTMN-MAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE  163 (445)
Q Consensus        85 GIavD~dG~LYVAD~~N-~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~  163 (445)
                      +|++|++|++||+|+.. ..|.|++++|....++...        .+ .......+++|++.+....|+|++. +++|.+
T Consensus       141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~--------~~-~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~  210 (334)
T 2p9w_A          141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWE--------SG-NGGQRPGYSGITFDPHSNKLIAFGG-PRALTA  210 (334)
T ss_dssp             EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEEC--------CC-CSSSCCSCSEEEEETTTTEEEEESS-SSSEEE
T ss_pred             eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeec--------CC-CcccccCcceEEEeCCCCEEEEEcC-CCeEEE
Confidence            99999999999999999 9999999999533322110        00 1122456889986544447788887 999999


Q ss_pred             EECCCC
Q 013321          164 IQLHDD  169 (445)
Q Consensus       164 i~l~~~  169 (445)
                      |++...
T Consensus       211 fD~~~p  216 (334)
T 2p9w_A          211 FDVSKP  216 (334)
T ss_dssp             EECSSS
T ss_pred             EcCCCC
Confidence            998753

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.65  E-value=4.2e-07  Score=91.24  Aligned_cols=126  Identities=16%  Similarity=0.191  Sum_probs=81.8

Q ss_pred             CCceEEEEcCC----CcEEEEeCC---C----CeEEEEeCCCCC--CCccEEE-ecCCCCcccCCCCCccCccCCCcceE
Q 013321           21 MEPFSVAVSPS----GELLVLDSE---N----SNIYKISTSLSP--YSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGL   86 (445)
Q Consensus        21 ~~P~gIAVdpd----G~LYVaDs~---n----~rI~kid~dg~~--~G~v~~v-aG~~~G~~G~~dG~~~~a~Ln~P~GI   86 (445)
                      ..|.||+++|+    |.|||+++.   +    ++|.+++.++..  .....++ .+.+            ......|.+|
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~------------~~~~h~~~~l  140 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP------------GAYIHNGGRI  140 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE------------CCSSCCCCCE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC------------CCCCcCCceE
Confidence            56999999996    899999974   3    799999876421  1112222 2211            0125578999


Q ss_pred             EEcCCCCEEEEeCC-------------CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECC-CCeEE
Q 013321           87 AVDDRGNIYIADTM-------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLL  152 (445)
Q Consensus        87 avD~dG~LYVAD~~-------------N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~-dG~Ly  152 (445)
                      +++++|.|||++..             +++|.+|+.+|... ..+.      ......-...+..|++|+ +++ +|.||
T Consensus       141 ~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p-~~np------f~~~~i~a~G~rnp~Gla-~d~~~g~l~  212 (354)
T 3a9g_A          141 RFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP-ADNP------FPNSPIWSYGHRNPQGID-WHRASGVMV  212 (354)
T ss_dssp             EECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC-TTSS------STTCCEEEECCSCCCEEE-ECTTTCCEE
T ss_pred             EECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC-CCCC------CCCCcEEEEccCCcceEE-EeCCCCCEE
Confidence            99999999999642             36899999887310 0000      000000112367899997 566 89999


Q ss_pred             EEECCCCe---EEEEEC
Q 013321          153 VIDRGNQA---IREIQL  166 (445)
Q Consensus       153 VaD~gn~r---Ir~i~l  166 (445)
                      |+|.+.++   |..+..
T Consensus       213 v~d~g~~~~dei~~i~~  229 (354)
T 3a9g_A          213 ATEHGPVGHDEVNIILK  229 (354)
T ss_dssp             EEECCSSSCCEEEEECT
T ss_pred             EEecCCCCCcEEEEecC
Confidence            99998765   666653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.64  E-value=7.9e-07  Score=92.56  Aligned_cols=126  Identities=17%  Similarity=0.249  Sum_probs=84.3

Q ss_pred             ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc
Q 013321            4 FEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP   83 (445)
Q Consensus         4 ~e~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P   83 (445)
                      .+.|+.++.++.+   ...|.+|+++++|+|||++...++|++++...   |....+...+.....       ......+
T Consensus        13 ~~~gf~~~~~a~~---l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~-------~~g~~Gl   79 (454)
T 1cru_A           13 KSENFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIVND-------ADGQNGL   79 (454)
T ss_dssp             CCTTSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCC-------TTSSCSE
T ss_pred             CCCCeEEEEEECC---CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC---CcEeEEecCCccccc-------cCCCCce
Confidence            4578899999874   35799999999999999998878999998642   555555543321100       0013357


Q ss_pred             ceEEEcC----CCCEEEEeCC------------CCEEEEEcCC---C----cEEEecCcccCCCCCCCCCccCcccCCCc
Q 013321           84 KGLAVDD----RGNIYIADTM------------NMAIRKISDT---G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDF  140 (445)
Q Consensus        84 ~GIavD~----dG~LYVAD~~------------N~rIrkfd~d---G----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~  140 (445)
                      .|||+++    +|.|||+++.            ..+|.+++.+   +    ..++.-+.          +.  .....+.
T Consensus        80 lgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~----------p~--~~~H~~~  147 (454)
T 1cru_A           80 LGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGL----------PS--SKDHQSG  147 (454)
T ss_dssp             EEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEE----------CC--CSSCCEE
T ss_pred             eEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcC----------CC--CCCCCCC
Confidence            7999998    7889999964            4689998732   1    11221100          00  1123567


Q ss_pred             eEEEECCCCeEEEEE
Q 013321          141 DVVYVGSSCSLLVID  155 (445)
Q Consensus       141 gI~~vd~dG~LyVaD  155 (445)
                      +|+ .+++|.|||+-
T Consensus       148 ~l~-f~pDG~Lyv~~  161 (454)
T 1cru_A          148 RLV-IGPDQKIYYTI  161 (454)
T ss_dssp             EEE-ECTTSCEEEEE
T ss_pred             eEe-ECCCCeEEEEE
Confidence            776 68999999984

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.57  E-value=6e-07  Score=91.15  Aligned_cols=134  Identities=13%  Similarity=0.097  Sum_probs=93.3

Q ss_pred             CCceEEEEcC--CC--cEEEEeCC--CCe--EEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC
Q 013321           21 MEPFSVAVSP--SG--ELLVLDSE--NSN--IYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG   92 (445)
Q Consensus        21 ~~P~gIAVdp--dG--~LYVaDs~--n~r--I~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG   92 (445)
                      ..|+||.+..  +|  .|||++..  +++  |++++.+    +.....+....       +    ..|+.|++++++++|
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~----~~~~~~~~~~~-------g----~~~~~pND~~v~~~G  176 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEE----EKSLLHLKTIR-------H----KLLPSVNDIVAVGPE  176 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETT----TTEEEEEEEEC-------C----TTCSSEEEEEEEETT
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECC----CCEEEEEeccc-------c----CCCCCCceEEEeCCC
Confidence            5899999965  45  59999986  455  5556665    23333332211       1    258999999999999


Q ss_pred             CEEEEeC-----------------CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEE
Q 013321           93 NIYIADT-----------------MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVI  154 (445)
Q Consensus        93 ~LYVAD~-----------------~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVa  154 (445)
                      .+||++.                 ..++|.+++.+.+..++.                 .+..|++|++ ++++ .|||+
T Consensus       177 ~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~-----------------~l~~pNGia~-spDg~~lYva  238 (355)
T 3sre_A          177 HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-----------------GFDFANGINI-SPDGKYVYIA  238 (355)
T ss_dssp             EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEE-----------------EESSEEEEEE-CTTSSEEEEE
T ss_pred             CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeec-----------------CCcccCcceE-CCCCCEEEEE
Confidence            9999875                 246788888754444322                 3568999975 6665 89999


Q ss_pred             ECCCCeEEEEECCCCcee----ecCCCCccceEEEEe
Q 013321          155 DRGNQAIREIQLHDDDCS----DNYDDTFHLGIFVLV  187 (445)
Q Consensus       155 D~gn~rIr~i~l~~~~~~----~~~~~g~P~gIav~~  187 (445)
                      |+..++|++++.+.....    .....+.|.|++++.
T Consensus       239 dt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~  275 (355)
T 3sre_A          239 ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  275 (355)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             eCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeC
Confidence            999999999998643211    122357899999986

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.55  E-value=2.1e-06  Score=86.89  Aligned_cols=154  Identities=18%  Similarity=0.161  Sum_probs=99.2

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      +...+++++++-   ..|.+|++.|+|.|||++...++|++++.++   |....+.+.+.-.         ......|.|
T Consensus        20 ~~~~~~~va~gL---~~P~~ia~~pdG~llVter~~G~I~~v~~~~---g~~~~v~~~~~v~---------~~g~~GllG   84 (347)
T 3das_A           20 SVKVLRTVATGL---NSPWGLAPLPGGDLLVSSRDEATITRVDAKT---GRKTELGEVPGVS---------PSGEGGLLG   84 (347)
T ss_dssp             CEEEEEEEECCC---SSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCC---------CBTTBSEEE
T ss_pred             CCceeEEeecCC---CCceEEEEcCCCcEEEEEecCCEEEEEECCC---CcEeeecccCcee---------ecCCCCcee
Confidence            345677777643   4699999999999999998889999998753   4455454432110         112457899


Q ss_pred             EEEcC----CCCEEEEeC--CCCEEEEEcCCC----------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC
Q 013321           86 LAVDD----RGNIYIADT--MNMAIRKISDTG----------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC  149 (445)
Q Consensus        86 IavD~----dG~LYVAD~--~N~rIrkfd~dG----------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG  149 (445)
                      ||+++    +|.|||+.+  ..++|.++..++          ..++.-+.          +.  ...-....|+ .+++|
T Consensus        85 ia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~----------p~--~~~H~g~~l~-fgpDG  151 (347)
T 3das_A           85 IALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGI----------PK--GVIHNGGRIA-FGPDK  151 (347)
T ss_dssp             EEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEE----------CC--CSSCCCCCEE-ECTTS
T ss_pred             eEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcC----------CC--CCCccCcccc-CCCCC
Confidence            99998    488999764  457899986432          11211100          00  1122455665 68999


Q ss_pred             eEEEEEC-------------CCCeEEEEECCCCc---------eeecCCCCccceEEEEe
Q 013321          150 SLLVIDR-------------GNQAIREIQLHDDD---------CSDNYDDTFHLGIFVLV  187 (445)
Q Consensus       150 ~LyVaD~-------------gn~rIr~i~l~~~~---------~~~~~~~g~P~gIav~~  187 (445)
                      .|||+-.             ..++|++|++++..         ..+..+.-.|.|+++..
T Consensus       152 ~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp  211 (347)
T 3das_A          152 MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDD  211 (347)
T ss_dssp             CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECT
T ss_pred             CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECC
Confidence            9999942             36899999988741         12233344566776654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.54  E-value=3.5e-06  Score=81.15  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=84.8

Q ss_pred             CceEEEEcCCCcEEEEeCC-CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~-n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..+++.+.++|+++|++.. +++|+.++++    |+...-.+...+.         ...+..|.+++++++|+++|++..
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~----Gk~l~~~~~~~~~---------~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNMK----GEVLSKTEFETGI---------ERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECTT----SCEEEEEEECCSC---------SSGGGSCSCCEECTTSCEEEEETT
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeCC----CCEEEEEeccCCC---------CcccccccCceECCCCCEEEEecC
Confidence            4567788888888888887 8888888877    4432222211011         113456889999999999999999


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC-CCc
Q 013321          101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDD  170 (445)
Q Consensus       101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~-~~~  170 (445)
                      +++|..||.+|..+......                ..|+++. ...+|.++|++..+++|..|++. +..
T Consensus       145 ~~~v~~~d~~G~~~w~~~~~----------------~~~~~~~-~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSVKLS----------------GTPFSSA-FLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             TTEEEEECTTSCEEEEEECS----------------SCCCEEE-ECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             CCEEEEECCCCCEEEEEECC----------------CCcccee-EcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            99999999889544432110                2456654 57889999999999999999988 443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.48  E-value=3e-06  Score=82.70  Aligned_cols=114  Identities=14%  Similarity=0.190  Sum_probs=82.6

Q ss_pred             CCceEEEEcCCCcEEEEeCC------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-
Q 013321           21 MEPFSVAVSPSGELLVLDSE------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-   93 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-   93 (445)
                      ..|.+++++++|+|||++..      .+.|++++ +    |++..+..                .+..|.+|+++++|. 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~----g~~~~~~~----------------~~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K----GKVTKLFA----------------DISIPNSICFSPDGTT  192 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T----TEEEEEEE----------------EESSEEEEEECTTSCE
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C----CcEEEeeC----------------CCcccCCeEEcCCCCE
Confidence            46899999999999999853      46899998 5    44444321                134688999999996 


Q ss_pred             EEEEeCCCCEEEEEcC---CC-c----EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEE
Q 013321           94 IYIADTMNMAIRKISD---TG-V----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ  165 (445)
Q Consensus        94 LYVAD~~N~rIrkfd~---dG-v----~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~  165 (445)
                      |||+|..+++|.+++.   +| .    ..+...         .     .....|.+++ +|.+|.|||++.++++|.+++
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~---------~-----~~~~~p~gi~-~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---------T-----GIKGGMDGSV-CDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC---------T-----TSSSEEEEEE-ECTTSCEEEEEETTTEEEEEC
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEEC---------C-----CCCCCCCeeE-ECCCCCEEEEEeCCCEEEEEC
Confidence            9999999999999984   34 1    111100         0     0112466765 799999999998889999999


Q ss_pred             CCCCc
Q 013321          166 LHDDD  170 (445)
Q Consensus       166 l~~~~  170 (445)
                      +.+..
T Consensus       258 ~~g~~  262 (326)
T 2ghs_A          258 TDGNH  262 (326)
T ss_dssp             TTCCE
T ss_pred             CCCCE
Confidence            86543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.47  E-value=1.1e-07  Score=96.52  Aligned_cols=113  Identities=13%  Similarity=0.072  Sum_probs=79.5

Q ss_pred             CCCCceEEEEcCCCcEEEEeC-----------------CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCC
Q 013321           19 FGMEPFSVAVSPSGELLVLDS-----------------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN   81 (445)
Q Consensus        19 ~g~~P~gIAVdpdG~LYVaDs-----------------~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln   81 (445)
                      ..+.|++++++++|.+||++.                 ..++|+++++     ++++.++.                .|.
T Consensus       163 ~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-----~~~~~~~~----------------~l~  221 (355)
T 3sre_A          163 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-----NDVRVVAE----------------GFD  221 (355)
T ss_dssp             TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-----TCCEEEEE----------------EES
T ss_pred             CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-----CeEEEeec----------------CCc
Confidence            457899999999999999874                 2478889886     24454443                277


Q ss_pred             CcceEEEcCCCC-EEEEeCCCCEEEEEcC--CCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECC-CCeEEEEE-C
Q 013321           82 HPKGLAVDDRGN-IYIADTMNMAIRKISD--TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVID-R  156 (445)
Q Consensus        82 ~P~GIavD~dG~-LYVAD~~N~rIrkfd~--dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~-dG~LyVaD-~  156 (445)
                      .|+|||+++||. |||||+..++|++|+-  +|..... ..    .   +      .-..|-++. +|. +|+|||+. .
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~-~~----~---~------~~g~PDGi~-vD~e~G~lwva~~~  286 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL-RV----L---S------FDTLVDNIS-VDPVTGDLWVGCHP  286 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE-EE----E---E------CSSEEEEEE-ECTTTCCEEEEEES
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC-EE----E---e------CCCCCceEE-EeCCCCcEEEEecC
Confidence            899999999985 9999999999999984  3421110 00    0   0      012466775 788 59999966 4


Q ss_pred             CCCeEEEEECC
Q 013321          157 GNQAIREIQLH  167 (445)
Q Consensus       157 gn~rIr~i~l~  167 (445)
                      +..+|.+++++
T Consensus       287 ~g~~v~~~~P~  297 (355)
T 3sre_A          287 NGMRIFFYDAE  297 (355)
T ss_dssp             CHHHHHSCCTT
T ss_pred             CceEEEEECCC
Confidence            55666666554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.46  E-value=3.9e-06  Score=80.80  Aligned_cols=120  Identities=12%  Similarity=0.018  Sum_probs=89.6

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.+++++++|+++|++..+++|+.++++    |+.....+..                ..|.++++.++|+++|++..
T Consensus       125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~----G~~~w~~~~~----------------~~~~~~~~~~~g~~~v~~~~  184 (276)
T 3no2_A          125 AQFRQINKNKKGNYLVPLFATSEVREIAPN----GQLLNSVKLS----------------GTPFSSAFLDNGDCLVACGD  184 (276)
T ss_dssp             GSCSCCEECTTSCEEEEETTTTEEEEECTT----SCEEEEEECS----------------SCCCEEEECTTSCEEEECBT
T ss_pred             ccccCceECCCCCEEEEecCCCEEEEECCC----CCEEEEEECC----------------CCccceeEcCCCCEEEEeCC
Confidence            357889999999999999999999999997    4544443321                25788999999999999999


Q ss_pred             CCEEEEEcCC-CcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC----------CCeEEEEECCCC
Q 013321          101 NMAIRKISDT-GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG----------NQAIREIQLHDD  169 (445)
Q Consensus       101 N~rIrkfd~d-Gv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g----------n~rIr~i~l~~~  169 (445)
                      +++|..||.+ |..+........         ....|..|.++. +.++|++||++..          +.++..|+.++.
T Consensus       185 ~~~v~~~d~~tG~~~w~~~~~~~---------~~~~l~~~~~~~-~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~  254 (276)
T 3no2_A          185 AHCFVQLNLESNRIVRRVNANDI---------EGVQLFFVAQLF-PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK  254 (276)
T ss_dssp             TSEEEEECTTTCCEEEEEEGGGS---------BSCCCSEEEEEE-ECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB
T ss_pred             CCeEEEEeCcCCcEEEEecCCCC---------CCccccccccce-EcCCCCEEEEeccCccccccccCCceEEEECCCCC
Confidence            9999999987 844332221100         112467788886 6889999999962          447888887775


Q ss_pred             c
Q 013321          170 D  170 (445)
Q Consensus       170 ~  170 (445)
                      .
T Consensus       255 ~  255 (276)
T 3no2_A          255 V  255 (276)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.45  E-value=9.2e-07  Score=89.20  Aligned_cols=125  Identities=16%  Similarity=0.046  Sum_probs=85.2

Q ss_pred             CceEEEEcCCCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           22 EPFSVAVSPSGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n-~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      .+.+|++|++|++||+|+.. +.|+|++++|.   .+..+.-.. ..         ......++||+++++|+ |+|+|.
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~---~~~~~~~~~-~~---------~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGK---TVSTFAWES-GN---------GGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSC---CEEEEEECC-CC---------SSSCCSCSEEEEETTTTEEEEESS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCC---EEeeeeecC-CC---------cccccCcceEEEeCCCCEEEEEcC
Confidence            48899999999999999998 99999999953   122222111 10         11245789999999997 778888


Q ss_pred             CCCEEEEEcCCCcEE--EecCcccCCCCCCCCCccCcccCCCceEEEECCCCeE-EEEECCCCeEEEEECCCCc
Q 013321          100 MNMAIRKISDTGVTT--IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL-LVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       100 ~N~rIrkfd~dGv~t--iaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~L-yVaD~gn~rIr~i~l~~~~  170 (445)
                       .++|.+||......  +.-...|          ....|..|.+|+.+..+|.+ +|++..++++...+.++..
T Consensus       205 -~g~L~~fD~~~pv~~~v~~~~~G----------~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~  267 (334)
T 2p9w_A          205 -PRALTAFDVSKPYAWPEPVKING----------DFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWK  267 (334)
T ss_dssp             -SSSEEEEECSSSSCCCEECEESS----------CCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTS
T ss_pred             -CCeEEEEcCCCCcceeecccccC----------CcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcc
Confidence             99999999664211  1100001          01245667776445567766 9999888888888877733

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.39  E-value=4.7e-06  Score=80.11  Aligned_cols=125  Identities=20%  Similarity=0.205  Sum_probs=84.5

Q ss_pred             CCceEEEEcCCCcEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           21 MEPFSVAVSPSGELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~--n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      ..|.+|+++|+|.||+++..  ++.|+.++.++   +....+....             .....|.+|+++++|. ||++
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~---g~~~~~~~~~-------------~~~~~p~~~a~spdg~~l~~~  103 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDG---QTAHKLNTVV-------------APGTPPAYVAVDEARQLVYSA  103 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEET---TEEEEEEEEE-------------EESCCCSEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecC---CcEEEeeeee-------------cCCCCCEEEEECCCCCEEEEE
Confidence            57999999999999999863  67888888753   3333332100             0134789999999998 9999


Q ss_pred             eCCCCEEEEEc--CCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 013321           98 DTMNMAIRKIS--DTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  167 (445)
Q Consensus        98 D~~N~rIrkfd--~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~  167 (445)
                      +..++.|..++  .+|. ..+.... ..  +  .++........|.+++ ++++|.||+++.++++|+.+++.
T Consensus       104 ~~~~~~v~v~~~~~~g~~~~~~~~~-~~--~--~~p~~~~~~~~~~~~~-~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          104 NYHKGTAEVMKIAADGALTLTDTVQ-HS--G--HGPRPEQDGSHIHYTD-LTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEE-CC--C--CCSSTTCSSCCEEEEE-ECTTSCEEEEETTTTEEEEEEEC
T ss_pred             eCCCCEEEEEEeCCCCCeeecceee-cC--C--CCCCccccCCCceEEE-ECCCCcEEEEeCCCCEEEEEEEC
Confidence            98888888887  3442 2221110 00  0  0111122334577776 68888899999999999999987

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.29  E-value=1.3e-05  Score=76.95  Aligned_cols=125  Identities=15%  Similarity=0.178  Sum_probs=82.7

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      ..|++++++|+|+||+++..+++|..++.+.  .|++..+.... ..           .-..|.+|+++++|. |||++.
T Consensus       141 ~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~--~g~~~~~~~~~-~~-----------~g~~p~~~~~spdg~~l~v~~~  206 (347)
T 3hfq_A          141 SHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD--AGQLSEQSVLT-ME-----------AGFGPRHLVFSPDGQYAFLAGE  206 (347)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEEEECT--TSCEEEEEEEE-CC-----------TTCCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEECCCCcEEEEeCCCCEEEEEEECC--CCcEEEeeeEE-cC-----------CCCCCceEEECCCCCEEEEEeC
Confidence            3588999999999999999999998888651  14443322110 00           113588999999998 999999


Q ss_pred             CCCEEEEEcCC---CcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECC
Q 013321          100 MNMAIRKISDT---GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLH  167 (445)
Q Consensus       100 ~N~rIrkfd~d---Gv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~-LyVaD~gn~rIr~i~l~  167 (445)
                      .+++|.+++.+   |...........       +........|.+++ ++++|. |||++.+++.|..++++
T Consensus       207 ~~~~v~v~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~i~-~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          207 LSSQIASLKYDTQTGAFTQLGIVKTI-------PADYTAHNGAAAIR-LSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEESS-------CTTCCSCCEEEEEE-ECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CCCEEEEEEecCCCCceEEeeeeeec-------CCCCCCCCcceeEE-ECCCCCEEEEEeCCCCEEEEEEEC
Confidence            99998888733   432211100000       00011124577776 577775 88999999999999976

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.28  E-value=1.4e-05  Score=80.76  Aligned_cols=126  Identities=14%  Similarity=0.209  Sum_probs=81.2

Q ss_pred             CCceEEEEcC----CCcEEEEeC--CCCeEEEEeCCCC-----CCCccEEEe-cCCCCcccCCCCCccCccCCCcceEEE
Q 013321           21 MEPFSVAVSP----SGELLVLDS--ENSNIYKISTSLS-----PYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAV   88 (445)
Q Consensus        21 ~~P~gIAVdp----dG~LYVaDs--~n~rI~kid~dg~-----~~G~v~~va-G~~~G~~G~~dG~~~~a~Ln~P~GIav   88 (445)
                      ..|.|||++|    +|.|||+.+  ..++|.|++.++.     ......++. +.+.            ........|++
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~------------~~~H~g~~l~f  147 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK------------GVIHNGGRIAF  147 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC------------CSSCCCCCEEE
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC------------CCCccCccccC
Confidence            5689999998    488999864  4679999987641     122333332 3221            02345678999


Q ss_pred             cCCCCEEEEeC-------------CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEE
Q 013321           89 DDRGNIYIADT-------------MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID  155 (445)
Q Consensus        89 D~dG~LYVAD~-------------~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD  155 (445)
                      +++|.|||+-.             ..++|.||+.+|... ..+.      +.+...-..-+.+|++++ .+++|.||++|
T Consensus       148 gpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip-~~nP------f~~~~i~a~G~RNp~Gla-~dp~G~L~~~d  219 (347)
T 3das_A          148 GPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA-PGNP------FPGSPVYSYGHRNVQGLA-WDDKQRLFASE  219 (347)
T ss_dssp             CTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC-TTCS------STTCCEEEBCCSBCCEEE-ECTTCCEEEEE
T ss_pred             CCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc-CCCC------CCCCeEEeeCCCCcceEE-ECCCCCEEEEe
Confidence            99999999932             357899999887310 0000      000011112467899997 57789999999


Q ss_pred             CCC---CeEEEEEC
Q 013321          156 RGN---QAIREIQL  166 (445)
Q Consensus       156 ~gn---~rIr~i~l  166 (445)
                      .+.   ..|.++..
T Consensus       220 ~g~~~~deln~i~~  233 (347)
T 3das_A          220 FGQDTWDELNAIKP  233 (347)
T ss_dssp             CCSSSCEEEEEECT
T ss_pred             cCCCCCceeeEEcC
Confidence            876   45666653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.26  E-value=1.6e-05  Score=77.52  Aligned_cols=112  Identities=13%  Similarity=0.134  Sum_probs=80.0

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.+|+++++|++||+.  .+.|++++..+   |++..+.....       +    ...+.|.++++|++|+|||++..
T Consensus        90 ~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~---g~~~~~~~~~~-------~----~~~~~~~~i~~d~~G~l~v~~~~  153 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS--DDGLFLRDTAT---GVLTLHAELES-------D----LPGNRSNDGRMHPSGALWIGTMG  153 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE--TTEEEEEETTT---CCEEEEECSST-------T----CTTEEEEEEEECTTSCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEE--CCCEEEEECCC---CcEEEEeeCCC-------C----CCCCCCCCEEECCCCCEEEEeCC
Confidence            368899999999999987  45699998763   55555543210       0    12456889999999999999863


Q ss_pred             ------CCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC
Q 013321          101 ------NMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH  167 (445)
Q Consensus       101 ------N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~  167 (445)
                            ..+|.+++ +|. ..+..                 .+..|.+++ .+++| .|||+|..+++|++++.+
T Consensus       154 ~~~~~~~~~l~~~~-~g~~~~~~~-----------------~~~~~~~i~-~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          154 RKAETGAGSIYHVA-KGKVTKLFA-----------------DISIPNSIC-FSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             TTCCTTCEEEEEEE-TTEEEEEEE-----------------EESSEEEEE-ECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CcCCCCceEEEEEe-CCcEEEeeC-----------------CCcccCCeE-EcCCCCEEEEEECCCCEEEEEEcc
Confidence                  46899998 663 22211                 123466776 56677 699999999999999975

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.25  E-value=8.9e-06  Score=81.33  Aligned_cols=141  Identities=11%  Similarity=0.114  Sum_probs=83.6

Q ss_pred             CCceEEEEcCCCcEEEEeCC-------------CCeEEEEeCCCCCCCccEEEecCCCCcccC--CCCCccCccCCCcce
Q 013321           21 MEPFSVAVSPSGELLVLDSE-------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGH--VDGRPRGARMNHPKG   85 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~-------------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~--~dG~~~~a~Ln~P~G   85 (445)
                      ..|.+|++++||.|||+...             .++|+|++++|+..      .+++  ..+.  .....-..-+.+|.|
T Consensus       130 h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p------~~np--f~~~~~~~~~i~a~G~rnp~g  201 (353)
T 2g8s_A          130 HFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP------DDNP--FIKESGVRAEIWSYGIRNPQG  201 (353)
T ss_dssp             CCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC------TTCT--TTTSTTSCTTEEEECCSEEEE
T ss_pred             ccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC------CCCC--CcCCCCCCccEEEEcCcCccc
Confidence            45889999999999999633             36899999985320      1111  0000  011111234789999


Q ss_pred             EEEcC-CCCEEEEeCCCC---EEEEEcCCCcE---EEecCcc--cCCCC-----CCCCCc-cC---cccCCCceEEEECC
Q 013321           86 LAVDD-RGNIYIADTMNM---AIRKISDTGVT---TIAGGKW--SRGVG-----HVDGPS-ED---AKFSNDFDVVYVGS  147 (445)
Q Consensus        86 IavD~-dG~LYVAD~~N~---rIrkfd~dGv~---tiaGg~~--G~g~G-----~~dgp~-~~---a~f~~P~gI~~vd~  147 (445)
                      |++|+ +|.||++|.+.+   +|.++...+..   ...++..  +....     ...+.. ..   .....|.++++...
T Consensus       202 l~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g  281 (353)
T 2g8s_A          202 MAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNS  281 (353)
T ss_dssp             EEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECC
T ss_pred             eEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECC
Confidence            99999 899999998753   56666544321   0011000  00000     000000 00   01236788876542


Q ss_pred             ------CCeEEEEECCCCeEEEEECCCC
Q 013321          148 ------SCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       148 ------dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                            +|.|||+|..+++|+++++++.
T Consensus       282 ~~fp~~~g~l~v~~~~~~~v~~~~~~~~  309 (353)
T 2g8s_A          282 DKFPQWQQKLFIGALKDKDVIVMSVNGD  309 (353)
T ss_dssp             SSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred             ccCcccCCcEEEEEccCCEEEEEEeCCC
Confidence                  5899999999999999998753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.15  E-value=9.1e-05  Score=70.21  Aligned_cols=142  Identities=12%  Similarity=0.176  Sum_probs=91.6

Q ss_pred             CCceEEEEcCCCc-EEEEeCC------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321           21 MEPFSVAVSPSGE-LLVLDSE------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN   93 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~   93 (445)
                      ..|.+++++++|. ||+++..      ++.|.+++..+   +++......                -..|.+++++++|.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~----------------~~~~~~~~~s~dg~  101 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---LEVTQAIHN----------------DLKPFGATINNTTQ  101 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT---CCEEEEEEE----------------SSCCCSEEEETTTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---CeEEEEEec----------------CCCcceEEECCCCC
Confidence            5699999999875 8999876      56899999863   333322211                12488999999998


Q ss_pred             -EEEEeCCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC-CCCeEEEEECCC
Q 013321           94 -IYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHD  168 (445)
Q Consensus        94 -LYVAD~~N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~-gn~rIr~i~l~~  168 (445)
                       |||++..++.|.++|.. |  +.++..+....        ........|.++++......||+++. .+++|+.+++..
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEESCCCCC--------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             EEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence             99999999999999964 4  23332211000        00111224677775444456999984 578899999876


Q ss_pred             Cceeec-C-CCCccceEEEEecc
Q 013321          169 DDCSDN-Y-DDTFHLGIFVLVAA  189 (445)
Q Consensus       169 ~~~~~~-~-~~g~P~gIav~~~a  189 (445)
                      ...... . ....|.++++....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEETTT
T ss_pred             CceEEEecCCCCccceEEECCCC
Confidence            554432 2 22346666665443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.13  E-value=0.00026  Score=67.04  Aligned_cols=134  Identities=10%  Similarity=0.123  Sum_probs=86.0

Q ss_pred             CceEEEEcCCCc-EEEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           22 EPFSVAVSPSGE-LLVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs-~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      .|.+++++++|+ ||+++. .+++|.+++...   ++........               -..|.+++++++|. ||+++
T Consensus       142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~---~~~~~~~~~~---------------~~~~~~~~~s~dg~~l~~~~  203 (353)
T 3vgz_A          142 QPRELVADDATNTVYISGIGKESVIWVVDGGN---IKLKTAIQNT---------------GKMSTGLALDSEGKRLYTTN  203 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEESSSCEEEEEETTT---TEEEEEECCC---------------CTTCCCCEEETTTTEEEEEC
T ss_pred             CCceEEECCCCCEEEEEecCCCceEEEEcCCC---CceEEEecCC---------------CCccceEEECCCCCEEEEEc
Confidence            389999999877 899984 578899999863   3333322210               12588999999988 88887


Q ss_pred             CCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeecC
Q 013321           99 TMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY  175 (445)
Q Consensus        99 ~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~  175 (445)
                      . ++.|.++|...   +..+..+..             .....+.++++......||+++..++.|..+++.........
T Consensus       204 ~-~~~i~~~d~~~~~~~~~~~~~~~-------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  269 (353)
T 3vgz_A          204 A-DGELITIDTADNKILSRKKLLDD-------------GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV  269 (353)
T ss_dssp             T-TSEEEEEETTTTEEEEEEECCCS-------------SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             C-CCeEEEEECCCCeEEEEEEcCCC-------------CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            6 78999999644   222222110             011245667654444469999999999999998765543322


Q ss_pred             CCCccceEEEEe
Q 013321          176 DDTFHLGIFVLV  187 (445)
Q Consensus       176 ~~g~P~gIav~~  187 (445)
                      ..+.+.++++..
T Consensus       270 ~~~~~~~~~~s~  281 (353)
T 3vgz_A          270 AAPESLAVLFNP  281 (353)
T ss_dssp             ECSSCCCEEEET
T ss_pred             EcCCCceEEECC
Confidence            233344444443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.11  E-value=0.00015  Score=68.64  Aligned_cols=130  Identities=13%  Similarity=0.238  Sum_probs=86.6

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc---EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-E
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP---KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I   94 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v---~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L   94 (445)
                      +..|.+++++|+|. ||+++..++.|.+++...   ++.   ......                -..|.+++++++|. |
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~---~~~~~~~~~~~~----------------~~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQN---PENITLLNAVGT----------------NNLPGTIVVSRDGSTV  235 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSS---TTSCEEEEEEEC----------------SSCCCCEEECTTSSEE
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCC---CcccceeeeccC----------------CCCCceEEECCCCCEE
Confidence            45699999999997 999999999999999763   333   111111                13688999999999 9


Q ss_pred             EEEeCCCCEEEEEcCC-C-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCce
Q 013321           95 YIADTMNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus        95 YVAD~~N~rIrkfd~d-G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      ||++...+.|.++|.. | +..+.....+.   ..+    ........+++ .+++| .|||+...++.|..+++.....
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGL---LID----PRPLFGANQMA-LNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECCC---CCC----CGGGTTCCCEE-ECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             EEEEcCCCEEEEEECCCCceeeeccccccc---ccC----CCCcccccceE-ECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            9999888899999965 4 22221111000   000    01111224565 45665 6899999999999999887665


Q ss_pred             eecCC
Q 013321          172 SDNYD  176 (445)
Q Consensus       172 ~~~~~  176 (445)
                      .....
T Consensus       308 ~~~~~  312 (331)
T 3u4y_A          308 GYVAG  312 (331)
T ss_dssp             EECTT
T ss_pred             cceec
Confidence            54433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.08  E-value=0.00014  Score=70.94  Aligned_cols=115  Identities=11%  Similarity=-0.011  Sum_probs=77.1

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      .+.|++++. +.||+++..+++|.++|...   .++...+-.  +             ...+.||+.| .+.|||+| +.
T Consensus        67 fgeGi~~~g-~~lyv~t~~~~~v~viD~~t---~~v~~~i~~--g-------------~~~g~glt~D-g~~l~vs~-gs  125 (266)
T 2iwa_A           67 FGEGLTLLN-EKLYQVVWLKNIGFIYDRRT---LSNIKNFTH--Q-------------MKDGWGLATD-GKILYGSD-GT  125 (266)
T ss_dssp             CEEEEEEET-TEEEEEETTCSEEEEEETTT---TEEEEEEEC--C-------------SSSCCEEEEC-SSSEEEEC-SS
T ss_pred             ceEEEEEeC-CEEEEEEecCCEEEEEECCC---CcEEEEEEC--C-------------CCCeEEEEEC-CCEEEEEC-CC
Confidence            466888874 58999999999999999863   222211111  1             0023456554 34599999 68


Q ss_pred             CEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          102 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       102 ~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      ++|.+||...   +.++.-+..+            ..+..|+.+.++  +|.||+.....+.|.+|++....+
T Consensus       126 ~~l~viD~~t~~v~~~I~Vg~~~------------~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          126 SILYEIDPHTFKLIKKHNVKYNG------------HRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTL  184 (266)
T ss_dssp             SEEEEECTTTCCEEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCE
T ss_pred             CeEEEEECCCCcEEEEEEECCCC------------cccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcE
Confidence            8999999776   3343322111            123467788765  679999998899999999977544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.08  E-value=9.9e-05  Score=72.00  Aligned_cols=112  Identities=10%  Similarity=0.087  Sum_probs=77.6

Q ss_pred             CCceEEEEcCCCcEEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           21 MEPFSVAVSPSGELLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs--~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      ..|.||+++++|.||++..  +.+.|.+++...   |++....-.+.              -..+.|++++ .+.||+++
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t---g~v~~~i~l~~--------------~~fgeGi~~~-g~~lyv~t   82 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQT---GKVENIHKMDD--------------SYFGEGLTLL-NEKLYQVV   82 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEEEETTT---CCEEEEEECCT--------------TCCEEEEEEE-TTEEEEEE
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEEEECCC---CCEEEEEecCC--------------CcceEEEEEe-CCEEEEEE
Confidence            3589999999899999975  478999999874   55443322210              2245688888 45799999


Q ss_pred             CCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321           99 TMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus        99 ~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      +.+++|.++|...   +.++..+ .+                .++++.  .+.+.|||+| +.++|..|++....
T Consensus        83 ~~~~~v~viD~~t~~v~~~i~~g-~~----------------~g~glt--~Dg~~l~vs~-gs~~l~viD~~t~~  137 (266)
T 2iwa_A           83 WLKNIGFIYDRRTLSNIKNFTHQ-MK----------------DGWGLA--TDGKILYGSD-GTSILYEIDPHTFK  137 (266)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECC-SS----------------SCCEEE--ECSSSEEEEC-SSSEEEEECTTTCC
T ss_pred             ecCCEEEEEECCCCcEEEEEECC-CC----------------CeEEEE--ECCCEEEEEC-CCCeEEEEECCCCc
Confidence            9999999999764   3333222 11                123333  3456899998 68899999987633

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.08  E-value=3e-05  Score=83.26  Aligned_cols=120  Identities=23%  Similarity=0.250  Sum_probs=78.7

Q ss_pred             CCceEEEEcC-CCcEEEEeCCC---------------------CeEEEEeCCCCC------CCccEEEecCCCCccc---
Q 013321           21 MEPFSVAVSP-SGELLVLDSEN---------------------SNIYKISTSLSP------YSRPKLVAGSPEGYYG---   69 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n---------------------~rI~kid~dg~~------~G~v~~vaG~~~G~~G---   69 (445)
                      ..|.+|+++| +|+|||+-+.|                     +.|+++..++.-      ...+.+++|.+....+   
T Consensus       384 dRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~  463 (592)
T 4a9v_A          384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK  463 (592)
T ss_dssp             ECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred             cCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccccc
Confidence            5699999999 89999997643                     779999764321      1133455665531110   


Q ss_pred             -CCCCCccCccCCCcceEEEcCCCCEEE-EeCC-----------CCEEEEEcC-CC-cEEEecCcccCCCCCCCCCccCc
Q 013321           70 -HVDGRPRGARMNHPKGLAVDDRGNIYI-ADTM-----------NMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDA  134 (445)
Q Consensus        70 -~~dG~~~~a~Ln~P~GIavD~dG~LYV-AD~~-----------N~rIrkfd~-dG-v~tiaGg~~G~g~G~~dgp~~~a  134 (445)
                       ...+......|+.|.+|+||++|+||| +|..           ++.|.++++ .| +..++.+.               
T Consensus       464 ~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P---------------  528 (592)
T 4a9v_A          464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---------------  528 (592)
T ss_dssp             GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---------------
T ss_pred             cCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---------------
Confidence             001122345799999999999999999 8863           668999997 45 44443221               


Q ss_pred             ccCCCceEEEECCCCeEEEEE
Q 013321          135 KFSNDFDVVYVGSSCSLLVID  155 (445)
Q Consensus       135 ~f~~P~gI~~vd~dG~LyVaD  155 (445)
                      .+..|+++++.++...|||+-
T Consensus       529 ~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          529 IGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             TTCEEEEEEECTTSSEEEEEE
T ss_pred             CCccccCCEECCCCCEEEEEE
Confidence            134678887654445777774

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.05  E-value=0.00013  Score=70.57  Aligned_cols=120  Identities=11%  Similarity=0.162  Sum_probs=80.6

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      +..|.+++++|+|. ||+++..++.|..++.+.   |.+..+.... ..         ...+..|.+|+++++|. |||+
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~---g~~~~~~~~~-~~---------~~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD---GMLDEIQTVA-AD---------TVNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEET---TEEEEEEEEE-SC---------SSCCCCEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC---CceEEeEEEe-cC---------CCCCCCcccEEECCCCCEEEEE
Confidence            45799999999997 899998889999998752   4443322111 00         01245688999999998 8899


Q ss_pred             eCC-CCEEEEEcC---CCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC
Q 013321           98 DTM-NMAIRKISD---TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH  167 (445)
Q Consensus        98 D~~-N~rIrkfd~---dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~  167 (445)
                      +.. +++|..++.   +|..........              -..|.+++ .+++| .||+++..++.|..+..+
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~--------------g~~~~~~~-~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLT--------------GIHPRNFI-ITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEEC--------------SSCCCEEE-ECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecC--------------CCCCceEE-ECCCCCEEEEEECCCCCEEEEEEE
Confidence            998 788888763   343222111000              12567776 57777 589999888888886544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.02  E-value=0.00026  Score=68.42  Aligned_cols=119  Identities=14%  Similarity=0.187  Sum_probs=79.1

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCC----c-cEEE-----ecCCCCcccCCCCCccCccCCCcceEEEcC
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYS----R-PKLV-----AGSPEGYYGHVDGRPRGARMNHPKGLAVDD   90 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G----~-v~~v-----aG~~~G~~G~~dG~~~~a~Ln~P~GIavD~   90 (445)
                      .|++++++|+|. ||+++..+++|..++.+... +    + +...     .-..              .-..|.++++++
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~--------------~~~~~~~~~~sp  220 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNA-NADNKEKFLTKGTPEAFKVA--------------PGSGPRHLIFNS  220 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTC-CTTTCCCCEEEEEEEEEECC--------------TTCCEEEEEECT
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC-CcccccceeecccccceecC--------------CCCCCeEEEEcC
Confidence            458899999997 99999988988888655211 1    1 2111     0000              123688999999


Q ss_pred             CCC-EEEEeCCCCEEEEEcC-CCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECC-CCeEEEEE
Q 013321           91 RGN-IYIADTMNMAIRKISD-TGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-NQAIREIQ  165 (445)
Q Consensus        91 dG~-LYVAD~~N~rIrkfd~-dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~g-n~rIr~i~  165 (445)
                      +|. |||++..+++|.+++. +|. ..+.....           ....+..|.+++ .+++| .||+++.+ .+.|..++
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~-----------~~~~~~~~~~i~-~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA-----------DTVNAQGSGDIH-LSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEES-----------CSSCCCCEEEEE-ECTTSSEEEEEECSSSCEEEEEE
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEec-----------CCCCCCCcccEE-ECCCCCEEEEECCCCCCEEEEEE
Confidence            997 9999988899999984 342 22211000           011234567776 57777 58899998 88999988


Q ss_pred             CC
Q 013321          166 LH  167 (445)
Q Consensus       166 l~  167 (445)
                      ++
T Consensus       289 ~~  290 (361)
T 3scy_A          289 VD  290 (361)
T ss_dssp             EC
T ss_pred             Ec
Confidence            75

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.95  E-value=0.001  Score=62.27  Aligned_cols=121  Identities=13%  Similarity=0.143  Sum_probs=78.8

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEE---EecCCCCcccCCCCCccCccCCCcceEEEcCCCC-E
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKL---VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I   94 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~---vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L   94 (445)
                      +..|.+++++|+|. ||+++..+++|..++.+.. .+.+..   +...+.+.          .....|.+|+++++|. |
T Consensus       177 ~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~----------~~~~~~~~i~~s~dg~~l  245 (343)
T 1ri6_A          177 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGNIECVQTLDMMPENF----------SDTRWAADIHITPDGRHL  245 (343)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSCCEEEEEEECSCTTC----------CSCCCEEEEEECTTSSEE
T ss_pred             CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEeeccccCccc----------cccCCccceEECCCCCEE
Confidence            35799999999987 8899988899999987521 133322   21111111          1245688999999996 8


Q ss_pred             EEEeCCCCEEEEEcCC---C-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC
Q 013321           95 YIADTMNMAIRKISDT---G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH  167 (445)
Q Consensus        95 YVAD~~N~rIrkfd~d---G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~  167 (445)
                      ||++..++.|.+++.+   + ...+.....               -..|.+++ .+++| .||+++..++.|..++.+
T Consensus       246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~-~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          246 YACDRTASLITVFSVSEDGSVLSKEGFQPT---------------ETQPRGFN-VDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEEC---------------SSSCCCEE-ECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEecCCCEEEEEEEcCCCCceEEeeeecC---------------CCccceEE-ECCCCCEEEEecCCCCeEEEEEEc
Confidence            8899888999999854   2 222211000               01256666 46666 588888778888887543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.88  E-value=9.1e-05  Score=76.99  Aligned_cols=122  Identities=13%  Similarity=0.116  Sum_probs=75.0

Q ss_pred             CCceEEEEcC----CCcEEEEeCC------------CCeEEEEeCCCCC--CCccEEEe-cCCCCcccCCCCCccCccCC
Q 013321           21 MEPFSVAVSP----SGELLVLDSE------------NSNIYKISTSLSP--YSRPKLVA-GSPEGYYGHVDGRPRGARMN   81 (445)
Q Consensus        21 ~~P~gIAVdp----dG~LYVaDs~------------n~rI~kid~dg~~--~G~v~~va-G~~~G~~G~~dG~~~~a~Ln   81 (445)
                      ..+.|||++|    +|.|||+++.            .++|.|++.+...  .....++. +.+.            ....
T Consensus        77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------------~~~H  144 (454)
T 1cru_A           77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------------SKDH  144 (454)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------------CSSC
T ss_pred             CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------------CCCC
Confidence            4577999999    7889999964            4689999864211  11222232 2221            1245


Q ss_pred             CcceEEEcCCCCEEEEeC--C------------------------------CCEEEEEcCCCcEEEecCcccCCCCCCCC
Q 013321           82 HPKGLAVDDRGNIYIADT--M------------------------------NMAIRKISDTGVTTIAGGKWSRGVGHVDG  129 (445)
Q Consensus        82 ~P~GIavD~dG~LYVAD~--~------------------------------N~rIrkfd~dGv~tiaGg~~G~g~G~~dg  129 (445)
                      .+.+|+++++|.|||+-.  .                              .++|.||+.+|... .++...  .+. ..
T Consensus       145 ~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip-~~Npf~--~~~-~~  220 (454)
T 1cru_A          145 QSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP-KDNPSF--NGV-VS  220 (454)
T ss_dssp             CEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC-TTCCEE--TTE-EC
T ss_pred             CCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCC-CCCCCC--CCC-cc
Confidence            789999999999999833  1                              36899999887310 000000  000 00


Q ss_pred             CccCcccCCCceEEEECCCCeEEEEECCCC
Q 013321          130 PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  159 (445)
Q Consensus       130 p~~~a~f~~P~gI~~vd~dG~LyVaD~gn~  159 (445)
                      -.-..-+.+|++++ .+++|.||++|.+.+
T Consensus       221 ei~a~G~RNp~gla-~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          221 HIYTLGHRNPQGLA-FTPNGKLLQSEQGPN  249 (454)
T ss_dssp             SEEEBCCSEEEEEE-ECTTSCEEEEEECSS
T ss_pred             eEEEECCCCcceEE-ECCCCCEEEEecCCC
Confidence            00112357899997 577899999998654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.82  E-value=9.7e-05  Score=71.57  Aligned_cols=79  Identities=20%  Similarity=0.305  Sum_probs=61.0

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ..+.+|++|| .|+|||+...+++|..++.+    |++..+.--..|..|-      ...+..|.|||+|++|+|||+.-
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~----g~~~~~~~L~~g~~~l------~~~~~qpEGia~d~~G~lyIvsE  242 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV----GEVIGEMSLTKGSRGL------SHNIKQAEGVAMDASGNIYIVSE  242 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTT----CCEEEEEECSTTGGGC------SSCCCSEEEEEECTTCCEEEEET
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCC----CCEEEEEEcCCccCCc------ccccCCCCeeEECCCCCEEEEcC
Confidence            5789999999 78999999999999999998    5554444332233331      22478999999999999999976


Q ss_pred             CCCEEEEEcCC
Q 013321          100 MNMAIRKISDT  110 (445)
Q Consensus       100 ~N~rIrkfd~d  110 (445)
                      .| .+.+|.+.
T Consensus       243 ~n-~~y~f~~~  252 (255)
T 3qqz_A          243 PN-RFYRFTPQ  252 (255)
T ss_dssp             TT-EEEEEEC-
T ss_pred             Cc-eEEEEEec
Confidence            65 89999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.74  E-value=0.0007  Score=63.88  Aligned_cols=112  Identities=13%  Similarity=0.158  Sum_probs=74.7

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcce-EEEcCCCC-EEE
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKG-LAVDDRGN-IYI   96 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~G-IavD~dG~-LYV   96 (445)
                      ..| +++++++|. ||+++..++.|++++..+   +++ ......                -..|.. ++++++|. ||+
T Consensus        41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~~----------------~~~~~~~~~~s~dg~~l~~  100 (331)
T 3u4y_A           41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQL---EPPKVVAIQE----------------GQSSMADVDITPDDQFAVT  100 (331)
T ss_dssp             CEE-EEEECSSSCEEEEEESTTCEEEEEECSS---SSCEEEEEEE----------------CSSCCCCEEECTTSSEEEE
T ss_pred             Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCC---CceeEEeccc----------------CCCCccceEECCCCCEEEE
Confidence            346 999999987 999999889999999874   343 222111                125667 99999998 564


Q ss_pred             EeCCCC--EEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCe-EEEEECCC
Q 013321           97 ADTMNM--AIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQA-IREIQLHD  168 (445)
Q Consensus        97 AD~~N~--rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~r-Ir~i~l~~  168 (445)
                      ++..++  .|.++|...-..+.-...               -..|.+++ .+++| .||+++..++. |+.++++.
T Consensus       101 ~~~~~~~~~i~v~d~~~~~~~~~~~~---------------~~~~~~~~-~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A          101 VTGLNHPFNMQSYSFLKNKFISTIPI---------------PYDAVGIA-ISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CCCSSSSCEEEEEETTTTEEEEEEEC---------------CTTEEEEE-ECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             ecCCCCcccEEEEECCCCCeEEEEEC---------------CCCccceE-ECCCCCEEEEEecCCCceEEEEEECC
Confidence            444335  899999654221111000               01356776 57777 59999998778 88777664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.74  E-value=0.0019  Score=62.99  Aligned_cols=112  Identities=12%  Similarity=0.071  Sum_probs=74.2

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ..||+++. +.||+++..++++.++|...   .++ ..+.-..                 .+.|++.| .+.||++|. .
T Consensus        89 geGit~~g-~~ly~ltw~~~~v~v~D~~t---~~~~~ti~~~~-----------------eG~glt~d-g~~L~~SdG-s  145 (262)
T 3nol_A           89 GEGISDWK-DKIVGLTWKNGLGFVWNIRN---LRQVRSFNYDG-----------------EGWGLTHN-DQYLIMSDG-T  145 (262)
T ss_dssp             EEEEEEET-TEEEEEESSSSEEEEEETTT---CCEEEEEECSS-----------------CCCCEEEC-SSCEEECCS-S
T ss_pred             eeEEEEeC-CEEEEEEeeCCEEEEEECcc---CcEEEEEECCC-----------------CceEEecC-CCEEEEECC-C
Confidence            46678764 58999999999999999863   222 2221110                 33477766 357999995 7


Q ss_pred             CEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          102 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       102 ~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      ++|..+|+..   +.++.-+..|            ..+..++.+.++  +|.||+.....+.|.+|++....+
T Consensus       146 ~~i~~iDp~T~~v~~~I~V~~~g------------~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V  204 (262)
T 3nol_A          146 PVLRFLDPESLTPVRTITVTAHG------------EELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKV  204 (262)
T ss_dssp             SEEEEECTTTCSEEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBE
T ss_pred             CeEEEEcCCCCeEEEEEEeccCC------------ccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcE
Confidence            8999999765   2333221111            123344556554  678999998888999999876544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.72  E-value=0.00067  Score=65.64  Aligned_cols=126  Identities=10%  Similarity=0.140  Sum_probs=80.7

Q ss_pred             ceEEEEcCCC-cEEEEeCCCC-eEEEEeCCCCCCC-ccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           23 PFSVAVSPSG-ELLVLDSENS-NIYKISTSLSPYS-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        23 P~gIAVdpdG-~LYVaDs~n~-rI~kid~dg~~~G-~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|||+|+++ .||++.-... .|+.++.  -..+ .+..+ ..+. ..       ....+..+.+|++|+ .|.|||..
T Consensus       123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~g--~~~~~~l~i~-~~~~-~~-------~~~~~~d~S~l~~dp~tg~lliLS  191 (255)
T 3qqz_A          123 FEGLAYSRQDHTFWFFKEKNPIEVYKVNG--LLSSNELHIS-KDKA-LQ-------RQFTLDDVSGAEFNQQKNTLLVLS  191 (255)
T ss_dssp             CEEEEEETTTTEEEEEEESSSEEEEEEES--TTCSSCCEEE-ECHH-HH-------HTCCSSCCCEEEEETTTTEEEEEE
T ss_pred             cceEEEeCCCCEEEEEECcCCceEEEEcc--cccCCceeee-cchh-hc-------cccccCCceeEEEcCCCCeEEEEE
Confidence            4999999965 6998876554 7888872  1111 12221 1100 00       011355789999998 77799999


Q ss_pred             CCCCEEEEEcCCCcEEEe-cCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321           99 TMNMAIRKISDTGVTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        99 ~~N~rIrkfd~dGv~tia-Gg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      ..+++|..+|.+|..+-. --..|.       ......+..|.||+ +|++|+|||+.-.| .+++|....
T Consensus       192 ~~s~~L~~~d~~g~~~~~~~L~~g~-------~~l~~~~~qpEGia-~d~~G~lyIvsE~n-~~y~f~~~~  253 (255)
T 3qqz_A          192 HESRALQEVTLVGEVIGEMSLTKGS-------RGLSHNIKQAEGVA-MDASGNIYIVSEPN-RFYRFTPQS  253 (255)
T ss_dssp             TTTTEEEEECTTCCEEEEEECSTTG-------GGCSSCCCSEEEEE-ECTTCCEEEEETTT-EEEEEEC--
T ss_pred             CCCCeEEEEcCCCCEEEEEEcCCcc-------CCcccccCCCCeeE-ECCCCCEEEEcCCc-eEEEEEecC
Confidence            999999999999942111 111010       01123467899997 69999999997764 999998653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.72  E-value=0.0028  Score=61.15  Aligned_cols=113  Identities=21%  Similarity=0.315  Sum_probs=80.3

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      .+.+++++++|. ||++...++.|..++...   ++.......                -..+.+++++++|. |||+..
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  135 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS---NTVAGTVKT----------------GKSPLGLALSPDGKKLYVTNN  135 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEEC----------------SSSEEEEEECTTSSEEEEEET
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCC---CeEEEEEeC----------------CCCcceEEECCCCCEEEEEeC
Confidence            689999999887 788988889999999873   343332221                12468999999998 779999


Q ss_pred             CCCEEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCcee
Q 013321          100 MNMAIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCS  172 (445)
Q Consensus       100 ~N~rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~~~  172 (445)
                      .++.|+.+|.. +.  .++..+                  ..|.+++ ..+++ .||++...++.|+.+++....+.
T Consensus       136 ~~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~-~~~dg~~l~~~~~~~~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          136 GDKTVSVINTVTKAVINTVSVG------------------RSPKGIA-VTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECC------------------SSEEEEE-ECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCCcEEEEEecC------------------CCcceEE-ECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence            89999999954 42  222111                  1245555 45555 67788888899999998765443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.69  E-value=0.00085  Score=62.87  Aligned_cols=117  Identities=12%  Similarity=0.087  Sum_probs=77.9

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      ..|.+++++|+|. ||+++..++.|..++.+.. .+....+....    .          -..|.+|+++++|. ||+++
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~----~----------~~~~~~~~~s~dg~~l~~~~  102 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD-DGALTFAAESA----L----------PGSLTHISTDHQGQFVFVGS  102 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEE----C----------SSCCSEEEECTTSSEEEEEE
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCC-CCceeeccccc----c----------CCCCcEEEEcCCCCEEEEEe
Confidence            4789999999987 8888887788888765411 13333322110    0          11688999999998 88999


Q ss_pred             CCCCEEEEEcC-CCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321           99 TMNMAIRKISD-TGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        99 ~~N~rIrkfd~-dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~  168 (445)
                      ...+.|..++. +|.  ..+....               ....|.+++ .+++| .||+++..+++|+.+++..
T Consensus       103 ~~~~~i~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~-~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A          103 YNAGNVSVTRLEDGLPVGVVDVVE---------------GLDGCHSAN-ISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEEEC---------------CCTTBCCCE-ECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCCeEEEEECCCCcccccccccc---------------CCCCceEEE-ECCCCCEEEEecCCCCEEEEEEecC
Confidence            88888998885 331  1111000               012356665 46666 6899988889999999865

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.66  E-value=0.0034  Score=60.49  Aligned_cols=112  Identities=17%  Similarity=0.148  Sum_probs=73.9

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ..||+++. +.||+++..+++++++|...   .++ ..+.-.                 ..+.||+.| .+.||++|. .
T Consensus        67 geGi~~~~-~~ly~ltw~~~~v~v~D~~t---l~~~~ti~~~-----------------~~Gwglt~d-g~~L~vSdg-s  123 (243)
T 3mbr_X           67 GAGIVAWR-DRLIQLTWRNHEGFVYDLAT---LTPRARFRYP-----------------GEGWALTSD-DSHLYMSDG-T  123 (243)
T ss_dssp             EEEEEEET-TEEEEEESSSSEEEEEETTT---TEEEEEEECS-----------------SCCCEEEEC-SSCEEEECS-S
T ss_pred             eeEEEEeC-CEEEEEEeeCCEEEEEECCc---CcEEEEEeCC-----------------CCceEEeeC-CCEEEEECC-C
Confidence            46777764 68999999999999999863   222 222111                 034577766 457999995 8


Q ss_pred             CEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          102 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       102 ~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      ++|..+|+..   +.++.-+..+            ..+...+.+.++  +|.||+.....+.|.+|++....+
T Consensus       124 ~~l~~iDp~t~~~~~~I~V~~~g------------~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V  182 (243)
T 3mbr_X          124 AVIRKLDPDTLQQVGSIKVTAGG------------RPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKV  182 (243)
T ss_dssp             SEEEEECTTTCCEEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBE
T ss_pred             CeEEEEeCCCCeEEEEEEEccCC------------cccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCE
Confidence            8999999765   2333222111            122344555543  678998888888999999876544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.66  E-value=0.0011  Score=64.74  Aligned_cols=112  Identities=12%  Similarity=0.014  Sum_probs=75.6

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ..||+++. +.||+++..++++.++|...   .++ ..+.-.                 ..+.||+.| .+.||++| +.
T Consensus        98 geGit~~g-~~Ly~ltw~~~~v~V~D~~T---l~~~~ti~~~-----------------~eGwGLt~D-g~~L~vSd-Gs  154 (268)
T 3nok_A           98 AEGLASDG-ERLYQLTWTEGLLFTWSGMP---PQRERTTRYS-----------------GEGWGLCYW-NGKLVRSD-GG  154 (268)
T ss_dssp             EEEEEECS-SCEEEEESSSCEEEEEETTT---TEEEEEEECS-----------------SCCCCEEEE-TTEEEEEC-SS
T ss_pred             eeEEEEeC-CEEEEEEccCCEEEEEECCc---CcEEEEEeCC-----------------CceeEEecC-CCEEEEEC-CC
Confidence            46788875 58999999999999999863   222 222111                 124588876 35799999 58


Q ss_pred             CEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          102 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       102 ~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      ++|..+|+..   +.++.-+..+            ..+..++.+.++  +|.||+.....+.|.+|++....+
T Consensus       155 ~~l~~iDp~T~~v~~~I~V~~~g------------~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          155 TMLTFHEPDGFALVGAVQVKLRG------------QPVELINELECA--NGVIYANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             SEEEEECTTTCCEEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBE
T ss_pred             CEEEEEcCCCCeEEEEEEeCCCC------------cccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcE
Confidence            9999999765   2333221111            123345666654  679999998889999999876544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.61  E-value=0.0019  Score=63.07  Aligned_cols=131  Identities=17%  Similarity=0.124  Sum_probs=80.0

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      +..|++++++|||. ||++|.++++|..++.+.  .|++..+.... ...          .-..|.+++++++|. |||+
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~--~g~~~~~~~~~-~~~----------~g~~p~~~~~spdg~~l~v~  210 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLA--SGEVELVGSVD-APD----------PGDHPRWVAMHPTGNYLYAL  210 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSCEEEEEEEE-CSS----------TTCCEEEEEECTTSSEEEEE
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECC--CCCEEEeeeEe-cCC----------CCCCCCEeEECCCCCEEEEE
Confidence            35799999999997 899998889999998751  14443321100 000          023689999999996 8999


Q ss_pred             eCCCCEEEEEc--C-CCcEE-----EecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCC-----eEEE
Q 013321           98 DTMNMAIRKIS--D-TGVTT-----IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQ-----AIRE  163 (445)
Q Consensus        98 D~~N~rIrkfd--~-dGv~t-----iaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~-----rIr~  163 (445)
                      +..++.|..++  . +|...     +.....+. .+. ..+  ......|.++++++++| .||+++.+.+     +|..
T Consensus       211 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-~g~-~~~--~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v  286 (365)
T 1jof_A          211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI-PDR-DPE--TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG  286 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC-CCB-CTT--TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred             ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc-CCc-ccc--cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEE
Confidence            98888888875  2 35321     21111000 000 000  00112466775256777 6899988766     8888


Q ss_pred             EECC
Q 013321          164 IQLH  167 (445)
Q Consensus       164 i~l~  167 (445)
                      ++++
T Consensus       287 ~~~~  290 (365)
T 1jof_A          287 FKLR  290 (365)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.56  E-value=0.0046  Score=59.67  Aligned_cols=113  Identities=19%  Similarity=0.389  Sum_probs=78.5

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      ..|.+++++++|. ||++...++.|..++...   +++.......                ..+.+++++++|. ||++.
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---~~~~~~~~~~----------------~~v~~~~~spdg~~l~~~~   92 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPAG----------------SSPQGVAVSPDGKQVYVTN   92 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEECS----------------SSEEEEEECTTSSEEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCC---CeEEEEEECC----------------CCccceEECCCCCEEEEEE
Confidence            3589999999987 778988889999999763   4443332211                1578999999998 88999


Q ss_pred             CCCCEEEEEcCCCc---EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCce
Q 013321           99 TMNMAIRKISDTGV---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus        99 ~~N~rIrkfd~dGv---~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      ...+.|+++|...-   .++..+                  ..+.+++ ..+++ .||++...++.|+.+++....+
T Consensus        93 ~~~~~v~v~d~~~~~~~~~~~~~------------------~~~~~~~-~s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           93 MASSTLSVIDTTSNTVAGTVKTG------------------KSPLGLA-LSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS------------------SSEEEEE-ECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCCeEEEEEeCC------------------CCcceEE-ECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            88899999996542   222111                  1245555 45555 4667888788888888765443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.50  E-value=0.0016  Score=62.75  Aligned_cols=109  Identities=15%  Similarity=0.067  Sum_probs=75.5

Q ss_pred             CCceEEEEcCCCcEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           21 MEPFSVAVSPSGELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~--n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      ..-.|++++. +.||++...  .+.|.+++...   |++......+..              ....||+++ .+.||+++
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t---gkv~~~~~l~~~--------------~fgeGi~~~-~~~ly~lt   81 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLET---GRILQRAEVPPP--------------YFGAGIVAW-RDRLIQLT   81 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTT---CCEEEEEECCTT--------------CCEEEEEEE-TTEEEEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCC---CCEEEEEeCCCC--------------cceeEEEEe-CCEEEEEE
Confidence            3457999987 799999764  57999999973   555544332211              133578887 46799999


Q ss_pred             CCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321           99 TMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus        99 ~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      +.+++|.++|.+.   +.++..+.                  .+++|+  ...+.||++| +.++|+.+++...
T Consensus        82 w~~~~v~v~D~~tl~~~~ti~~~~------------------~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~  134 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTPRARFRYPG------------------EGWALT--SDDSHLYMSD-GTAVIRKLDPDTL  134 (243)
T ss_dssp             SSSSEEEEEETTTTEEEEEEECSS------------------CCCEEE--ECSSCEEEEC-SSSEEEEECTTTC
T ss_pred             eeCCEEEEEECCcCcEEEEEeCCC------------------CceEEe--eCCCEEEEEC-CCCeEEEEeCCCC
Confidence            9999999999765   33332211                  245554  3456899998 5888999998763

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.41  E-value=0.0013  Score=61.82  Aligned_cols=117  Identities=9%  Similarity=0.029  Sum_probs=77.5

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N  101 (445)
                      +.|+++.+++.+||+...++.|.+++...   +++......+              ....|.+++++++|. +||++..+
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~--------------~~~~~~~~~~s~dg~~~~v~~~~~   64 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMP--------------DKFGPGTAMMAPDNRTAYVLNNHY   64 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTTEEEEEETTT---TEEEEEEECS--------------SCCSSCEEEECTTSSEEEEEETTT
T ss_pred             CccccccCCCEEEEEeCCCCeEEEEECCC---CcEEEEEecC--------------CCCCCceeEECCCCCEEEEEeCCC
Confidence            45778888899999999999999999863   4433222111              012488999999997 89999989


Q ss_pred             CEEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECC-----------CCeEEEEEC
Q 013321          102 MAIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-----------NQAIREIQL  166 (445)
Q Consensus       102 ~rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~g-----------n~rIr~i~l  166 (445)
                      +.|.++|.. +.  ..+.....         +  ...-..|.+++ .+++| .||+++..           ++.|+.+++
T Consensus        65 ~~i~~~d~~t~~~~~~~~~~~~---------~--~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~  132 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHANLSSV---------P--GEVGRSMYSFA-ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  132 (349)
T ss_dssp             TEEEEEETTTTEEEEEEESCCS---------T--TEEEECSSCEE-ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             CcEEEEeCCCCcEEEEEEcccc---------c--ccccccccceE-ECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence            999999965 42  22221100         0  00112466776 46666 67887754           579999997


Q ss_pred             CC
Q 013321          167 HD  168 (445)
Q Consensus       167 ~~  168 (445)
                      ..
T Consensus       133 ~~  134 (349)
T 1jmx_B          133 AD  134 (349)
T ss_dssp             GG
T ss_pred             CC
Confidence            65

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.37  E-value=0.0021  Score=62.94  Aligned_cols=106  Identities=12%  Similarity=0.097  Sum_probs=73.3

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      -.||.++ ++.||++....++|.+++...   |++.... .+..              ....||+++. +.||++++.++
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~T---gkv~~~~-l~~~--------------~FgeGit~~g-~~Ly~ltw~~~  116 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLES---AQPVWME-RLGN--------------IFAEGLASDG-ERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSC---SSCSEEE-ECTT--------------CCEEEEEECS-SCEEEEESSSC
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCC---CcEEeEE-CCCC--------------cceeEEEEeC-CEEEEEEccCC
Confidence            3699998 479999999999999999874   4432222 2111              1335788874 57999999999


Q ss_pred             EEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321          103 AIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       103 rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      +|.++|...   +.++....                  .+++++  ...+.||++| +.++|+.|++...
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~~------------------eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~  165 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYSG------------------EGWGLC--YWNGKLVRSD-GGTMLTFHEPDGF  165 (268)
T ss_dssp             EEEEEETTTTEEEEEEECSS------------------CCCCEE--EETTEEEEEC-SSSEEEEECTTTC
T ss_pred             EEEEEECCcCcEEEEEeCCC------------------ceeEEe--cCCCEEEEEC-CCCEEEEEcCCCC
Confidence            999999765   33332211                  234554  2346899998 5889999997763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.36  E-value=0.0019  Score=62.91  Aligned_cols=106  Identities=11%  Similarity=-0.002  Sum_probs=71.4

Q ss_pred             eEEEEcCCCcEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           24 FSVAVSPSGELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        24 ~gIAVdpdG~LYVaDs~--n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      .||.++ +|.||++...  .+.|.+++...   |++......+..              ....||+++. +.||++++.+
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~T---gkv~~~~~l~~~--------------~FgeGit~~g-~~ly~ltw~~  106 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIES---GKTLQQIELGKR--------------YFGEGISDWK-DKIVGLTWKN  106 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTT---CCEEEEEECCTT--------------CCEEEEEEET-TEEEEEESSS
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCC---CcEEEEEecCCc--------------cceeEEEEeC-CEEEEEEeeC
Confidence            899998 7899999864  46999999874   555433322111              1335788874 5799999999


Q ss_pred             CEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321          102 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       102 ~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      +++.++|.+.   +.++.-+.                  .+++++  .+.+.||++| +.++|+.|++...
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~------------------eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~  156 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDG------------------EGWGLT--HNDQYLIMSD-GTPVLRFLDPESL  156 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSS------------------CCCCEE--ECSSCEEECC-SSSEEEEECTTTC
T ss_pred             CEEEEEECccCcEEEEEECCC------------------CceEEe--cCCCEEEEEC-CCCeEEEEcCCCC
Confidence            9999999754   33443221                  223443  3346788888 4788888887653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.32  E-value=0.0039  Score=58.11  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=72.3

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      .|.+++++++|. ||+++..++.|.+++..+   ++........  ..+        ..-..|.+++++++|. ||+++.
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~--~~~--------~~~~~~~~~~~s~dg~~l~~~~~  101 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLS--TPE--------ERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECC--BTT--------EEEECTTCEEECTTSSEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCC---CCeEeeEEcC--Ccc--------cccccccceEECCCCCEEEEEec
Confidence            589999999984 899999889999999763   4433222111  000        0112588999999995 999962


Q ss_pred             -----------CCCEEEEEcCCCc---EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCe-EEEEECCCCeEEEE
Q 013321          100 -----------MNMAIRKISDTGV---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREI  164 (445)
Q Consensus       100 -----------~N~rIrkfd~dGv---~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~-LyVaD~gn~rIr~i  164 (445)
                                 .++.|.++|....   ..+..+                  ..|.+++ .+++|. ||++   ++.|+.+
T Consensus       102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------------------~~~~~~~-~s~dg~~l~~~---~~~i~~~  159 (337)
T 1pby_B          102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAP------------------RQITMLA-WARDGSKLYGL---GRDLHVM  159 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECC------------------SSCCCEE-ECTTSSCEEEE---SSSEEEE
T ss_pred             ccccccccccccCceEEEEECCCCcEEEEEeCC------------------CCcceeE-ECCCCCEEEEe---CCeEEEE
Confidence                       3588999996542   222111                  1245555 455554 7776   3677777


Q ss_pred             ECCCC
Q 013321          165 QLHDD  169 (445)
Q Consensus       165 ~l~~~  169 (445)
                      ++...
T Consensus       160 d~~~~  164 (337)
T 1pby_B          160 DPEAG  164 (337)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            76653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.27  E-value=0.0059  Score=57.36  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      .|.+++++++|. +|+++..++.|.+++..+   ++.......... .        ...-..|.+++++++|. ||+++.
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---~~~~~~~~~~~~-~--------~~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLSSV-P--------GEVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESCCS-T--------TEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCC---CcEEEEEEcccc-c--------ccccccccceEECCCCCEEEEEcc
Confidence            589999999986 899998899999999863   444322221100 0        00123588999999997 888874


Q ss_pred             C-----------CCEEEEEcCC
Q 013321          100 M-----------NMAIRKISDT  110 (445)
Q Consensus       100 ~-----------N~rIrkfd~d  110 (445)
                      .           ++.|.++|..
T Consensus       112 ~~~~~~~~~~~~~~~i~~~d~~  133 (349)
T 1jmx_B          112 PTQRLNDHYVVKPPRLEVFSTA  133 (349)
T ss_dssp             EEEECSSCEEECCCEEEEEEGG
T ss_pred             cccccccccccCCCeEEEEECC
Confidence            4           5789998843

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.26  E-value=0.01  Score=62.36  Aligned_cols=142  Identities=10%  Similarity=-0.032  Sum_probs=86.0

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC----CCC-EE
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD----RGN-IY   95 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~----dG~-LY   95 (445)
                      .|++++++|+|. ||+++.. +.|.+++.+.. .+++....-.                -..|.+|++++    +|. ||
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~-t~~~~~~i~~----------------g~~p~~va~sp~~~~dg~~l~  241 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-ARIDMIDLWAK-EPTKVAEIKI----------------GIEARSVESSKFKGYEDRYTI  241 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-SEEEEEETTSS-SCEEEEEEEC----------------CSEEEEEEECCSTTCTTTEEE
T ss_pred             ccceEEECCCCCEEEEECCC-CeEEEEECcCC-CCcEEEEEec----------------CCCcceEEeCCCcCCCCCEEE
Confidence            489999999986 7888866 89999998310 1332211111                12589999999    887 89


Q ss_pred             EEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 013321           96 IADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  172 (445)
Q Consensus        96 VAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~  172 (445)
                      |++...+.|..+|...   +.++......     .++.. -..-..+.+|++......+||+....++|+.++.....+.
T Consensus       242 v~~~~~~~v~v~D~~t~~~~~~i~~~g~~-----~~~~~-~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l  315 (543)
T 1nir_A          242 AGAYWPPQFAIMDGETLEPKQIVSTRGMT-----VDTQT-YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL  315 (543)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEECCEEC-----SSSCC-EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred             EEEccCCeEEEEeccccccceeecccCcc-----cCccc-cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence            9998888999999543   3344321100     00000 0001245566654445688889899999999997653221


Q ss_pred             ---ecCCCCccceEEEEe
Q 013321          173 ---DNYDDTFHLGIFVLV  187 (445)
Q Consensus       173 ---~~~~~g~P~gIav~~  187 (445)
                         .......|.++++..
T Consensus       316 ~~~~i~~~~~~~~~~~sp  333 (543)
T 1nir_A          316 TVTSIGAAPFLHDGGWDS  333 (543)
T ss_dssp             EEEEEECCSSCCCEEECT
T ss_pred             eeEEeccCcCccCceECC
Confidence               122233455555543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.25  E-value=0.0072  Score=60.56  Aligned_cols=79  Identities=13%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             CCCceEEEEcCCCc-EEEEeC---------CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321           20 GMEPFSVAVSPSGE-LLVLDS---------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD   89 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs---------~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD   89 (445)
                      +..| +|+++|||. |||++.         ..+.|.+|+...   .++...+-.+ +.     +  .......|.+++++
T Consensus        66 g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t---~~~~~~i~~~-~~-----~--~~~~g~~p~~~~~s  133 (373)
T 2mad_H           66 GFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---FLPIADIELP-DA-----P--RFDVGPYSWMNANT  133 (373)
T ss_pred             CCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC---CcEEEEEECC-Cc-----c--ccccCCCccceEEC
Confidence            3568 999999986 999985         246788998752   2221111110 00     0  00012479999999


Q ss_pred             CCCC-EEEEeCC-CCEEEEEcCCC
Q 013321           90 DRGN-IYIADTM-NMAIRKISDTG  111 (445)
Q Consensus        90 ~dG~-LYVAD~~-N~rIrkfd~dG  111 (445)
                      ++|. |||+... .+.|.+|| ..
T Consensus       134 pDG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H          134 PNNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             CCCCEEEEEecCCCCeEEEEE-CC
Confidence            9998 9999875 68899999 65

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.23  E-value=0.0037  Score=61.00  Aligned_cols=133  Identities=16%  Similarity=0.115  Sum_probs=77.1

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE----EEecCCCCcccCCCCCccCccCCCcceEE-EcCCCC
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK----LVAGSPEGYYGHVDGRPRGARMNHPKGLA-VDDRGN   93 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~----~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa-vD~dG~   93 (445)
                      +..|.+++++|+|. ||+++..++.|..++.+.. .|++.    .+...+.+..|.. +...  ....|.+|+ ++++|.
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~g~~-~~~~--~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGIPDRD-PETG--KGLYRADVCALTFSGK  267 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTCCCBC-TTTS--SBSEEEEEEEECTTSS
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCcCCcc-cccc--cccccccEEEECCCCC
Confidence            45799999999995 8899887888877754311 14432    1222221111110 0000  122588999 999997


Q ss_pred             -EEEEeCCCC-----EEEEEc--CCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEEC---CCCeEEEEECCCCeE
Q 013321           94 -IYIADTMNM-----AIRKIS--DTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG---SSCSLLVIDRGNQAI  161 (445)
Q Consensus        94 -LYVAD~~N~-----rIrkfd--~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd---~dG~LyVaD~gn~rI  161 (445)
                       |||++...+     +|.+++  .+|. ..+......             .-..|.++++.+   +...||+++..++.|
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~-------------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-------------PTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-------------SSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec-------------CCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence             899987655     888776  3453 221100000             001244454433   345789998888888


Q ss_pred             EEEECCCC
Q 013321          162 REIQLHDD  169 (445)
Q Consensus       162 r~i~l~~~  169 (445)
                      ..++.+..
T Consensus       335 ~v~~~~~~  342 (365)
T 1jof_A          335 EIYRWKDE  342 (365)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEchh
Confidence            88877654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.18  E-value=0.0097  Score=62.08  Aligned_cols=160  Identities=13%  Similarity=0.078  Sum_probs=93.8

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCc--EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSPSGE--LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP   83 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdpdG~--LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P   83 (445)
                      .|+.+++++++   ...|.+|++.|+|.  |||++. .++|++++.++...  ...+++.+.-.   ..|. .......+
T Consensus         2 ~gf~v~~va~g---L~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~--~~~~~~~~~~~---~~g~-~~~~e~Gl   71 (463)
T 2wg3_C            2 NCFCIQEVVSG---LRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIF--KEPYLDIHKLV---QSGI-KGGDERGL   71 (463)
T ss_dssp             CCEEEEEEEEE---ESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBC--SSCSEECTTTB---CCCC-SSSCCCSE
T ss_pred             CceEEEEeccC---CCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCee--eeeecCCccee---ccCc-cccCCCcc
Confidence            47888888874   35799999999985  999996 68999998764311  11122221000   0000 00012356


Q ss_pred             ceEEEcCC----CCEEEEeCCC------------CEEEEEcCC----C------cEEEecCcccCCCCCCCCCccCcccC
Q 013321           84 KGLAVDDR----GNIYIADTMN------------MAIRKISDT----G------VTTIAGGKWSRGVGHVDGPSEDAKFS  137 (445)
Q Consensus        84 ~GIavD~d----G~LYVAD~~N------------~rIrkfd~d----G------v~tiaGg~~G~g~G~~dgp~~~a~f~  137 (445)
                      .|||++++    |.|||+-+..            .+|.++..+    .      ..+|.....            ...--
T Consensus        72 lgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~------------~~~~H  139 (463)
T 2wg3_C           72 LSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE------------LHRKH  139 (463)
T ss_dssp             EEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE------------SSSSS
T ss_pred             eeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC------------CCCcc
Confidence            79999985    8899985421            477777621    1      122211100            00111


Q ss_pred             CCceEEEECCCCeEEEEEC--C---------------CCeEEEEECCCCc---------------------eeecCCCCc
Q 013321          138 NDFDVVYVGSSCSLLVIDR--G---------------NQAIREIQLHDDD---------------------CSDNYDDTF  179 (445)
Q Consensus       138 ~P~gI~~vd~dG~LyVaD~--g---------------n~rIr~i~l~~~~---------------------~~~~~~~g~  179 (445)
                      ....|+ .+++|.|||+--  +               .++|.+|++++..                     ..+..+.-.
T Consensus       140 ~g~~l~-fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN  218 (463)
T 2wg3_C          140 LGGQLL-FGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD  218 (463)
T ss_dssp             CEEEEE-ECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS
T ss_pred             cCCcEe-ECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC
Confidence            234455 689999999832  2               3679999998831                     122333446


Q ss_pred             cceEEEEec
Q 013321          180 HLGIFVLVA  188 (445)
Q Consensus       180 P~gIav~~~  188 (445)
                      |.++++...
T Consensus       219 p~gla~dp~  227 (463)
T 2wg3_C          219 PGRCAVDRH  227 (463)
T ss_dssp             CCBEEEESS
T ss_pred             cceEEECCC
Confidence            888888865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.16  E-value=0.0093  Score=58.33  Aligned_cols=109  Identities=13%  Similarity=0.093  Sum_probs=76.6

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      .|.+++++++|. ||++...++.|..++...   +++......                ...|.+++++++|. ||+++.
T Consensus       304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPV----------------FDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             CEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEEC----------------SSSEEEEEECTTSSEEEEEEC
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecC----------------CCCCCeEEEcCCCCEEEEEec
Confidence            688999999885 899999999999999873   333332221                12578999999997 888887


Q ss_pred             CC--------------CEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeE
Q 013321          100 MN--------------MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAI  161 (445)
Q Consensus       100 ~N--------------~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rI  161 (445)
                      .+              +.|+.+|.. +  +.++.+                  -..|.++++ .++| .|++++..++.|
T Consensus       365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~-s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------------------GNQPTGLDV-SPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC------------------SSSEEEEEE-CTTSCEEEEEETTTTEE
T ss_pred             CCCccccccccccccceEEEEEECCCCcEEEEecC------------------CCCCceEEE-cCCCCEEEEEECCCCeE
Confidence            64              389999964 4  222211                  113566664 5666 567777778999


Q ss_pred             EEEECCC
Q 013321          162 REIQLHD  168 (445)
Q Consensus       162 r~i~l~~  168 (445)
                      +.+++++
T Consensus       426 ~v~~~~~  432 (433)
T 3bws_A          426 RVYRRDG  432 (433)
T ss_dssp             EEEEETT
T ss_pred             EEEEecC
Confidence            9998653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.08  E-value=0.0042  Score=64.23  Aligned_cols=78  Identities=9%  Similarity=-0.010  Sum_probs=55.4

Q ss_pred             CCCceEEEEcCCCc-EEEEeC---------CCCeEEEEeCCCCCCCccE-EE-ecCCCCcccCCCCCccCccCCCcceEE
Q 013321           20 GMEPFSVAVSPSGE-LLVLDS---------ENSNIYKISTSLSPYSRPK-LV-AGSPEGYYGHVDGRPRGARMNHPKGLA   87 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs---------~n~rI~kid~dg~~~G~v~-~v-aG~~~G~~G~~dG~~~~a~Ln~P~GIa   87 (445)
                      +..| +|+++|||. |||++.         .++.|.+||...   +++. .+ .+.. +.         ......|.+++
T Consensus       118 G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t---~~vv~~I~v~g~-~r---------~~~g~~P~~~~  183 (426)
T 3c75_H          118 GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT---FLPIADIELPDA-PR---------FLVGTYQWMNA  183 (426)
T ss_dssp             CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTC-CC---------CCBSCCGGGSE
T ss_pred             CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC---CcEEEEEECCCc-cc---------cccCCCcceEE
Confidence            4679 999999886 999986         356799999863   3332 22 2211 00         00125799999


Q ss_pred             EcCCCC-EEEEeCC-CCEEEEEcCCC
Q 013321           88 VDDRGN-IYIADTM-NMAIRKISDTG  111 (445)
Q Consensus        88 vD~dG~-LYVAD~~-N~rIrkfd~dG  111 (445)
                      +++||. |||++.. .+.|.+||...
T Consensus       184 ~spDGk~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          184 LTPDNKNLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             EcCCCCEEEEEecCCCCeEEEEECCC
Confidence            999997 9999975 78999999655

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.07  E-value=0.0096  Score=58.23  Aligned_cols=136  Identities=9%  Similarity=0.058  Sum_probs=87.3

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.++++++++.++++...++.|..++...   ++........ ...+         ......++++.++|.+|++...
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~~-~~~~---------~~~~v~~~~~~~~~~~~~s~~~  189 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINS---GQTVRLSPPE-KYKK---------KLGFVETISIPEHNELWVSQMQ  189 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTT---CCEEEECCCH-HHHT---------TCCEEEEEEEGGGTEEEEEEGG
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCC---CeEeeecCcc-cccc---------cCCceeEEEEcCCCEEEEEECC
Confidence            4578899999888999988888999999873   4443322110 0011         1224568999999999999999


Q ss_pred             CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-cCC
Q 013321          101 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYD  176 (445)
Q Consensus       101 N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~-~~~  176 (445)
                      .+.|+.+|.+.   +.++..                 .-..+.++++......||++...++.|+.+++....+.. ...
T Consensus       190 d~~v~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~  252 (433)
T 3bws_A          190 ANAVHVFDLKTLAYKATVDL-----------------TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK  252 (433)
T ss_dssp             GTEEEEEETTTCCEEEEEEC-----------------SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC
T ss_pred             CCEEEEEECCCceEEEEEcC-----------------CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC
Confidence            99999999554   222221                 012356666544444677888888999999987654433 222


Q ss_pred             CCccceEEEE
Q 013321          177 DTFHLGIFVL  186 (445)
Q Consensus       177 ~g~P~gIav~  186 (445)
                      .+.+.++++.
T Consensus       253 ~~~~~~~~~~  262 (433)
T 3bws_A          253 IGLPRGLLLS  262 (433)
T ss_dssp             CSEEEEEEEC
T ss_pred             CCCceEEEEc
Confidence            2334444443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.92  E-value=0.039  Score=55.17  Aligned_cols=48  Identities=10%  Similarity=0.068  Sum_probs=32.0

Q ss_pred             CCceEEEECCCCe--EEEEECCCCeEEEEECCCCceeec-C-CCCccceEEEE
Q 013321          138 NDFDVVYVGSSCS--LLVIDRGNQAIREIQLHDDDCSDN-Y-DDTFHLGIFVL  186 (445)
Q Consensus       138 ~P~gI~~vd~dG~--LyVaD~gn~rIr~i~l~~~~~~~~-~-~~g~P~gIav~  186 (445)
                      .|++|. ++++|.  +|++..+.+.|..|+......... . -...|.+|...
T Consensus       319 ~p~~i~-~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~~~  370 (373)
T 2mad_H          319 DVDAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             CcCeEE-ECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEEEc
Confidence            478886 577775  777777889999999877554432 2 23456666543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.87  E-value=0.0082  Score=61.41  Aligned_cols=113  Identities=16%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             cCCC-cEEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCC--
Q 013321           29 SPSG-ELLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM--  100 (445)
Q Consensus        29 dpdG-~LYVaDs~----n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~--  100 (445)
                      .|+| .|||+|..    .++|.+||...   +++...+-.     |           ..|. |+++++|. |||+++.  
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t---~~v~~~I~v-----G-----------~~P~-va~spDG~~lyVan~~~~  100 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEA---GRVIGMIDG-----G-----------FLPN-PVVADDGSFIAHASTVFS  100 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTT---TEEEEEEEE-----C-----------SSCE-EEECTTSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCC---CeEEEEEEC-----C-----------CCCc-EEECCCCCEEEEEccccc
Confidence            4565 49999986    68999999863   333322211     1           1475 99999998 9999852  


Q ss_pred             -------CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECC-CCeEEEEECCC
Q 013321          101 -------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-NQAIREIQLHD  168 (445)
Q Consensus       101 -------N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~g-n~rIr~i~l~~  168 (445)
                             .+.|.+||...   +.++.-+.     |.    . ...-..|.+++ ++++| .|||++.. .+.|..|++..
T Consensus       101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~-----g~----r-~~~g~~P~~~a-~spDGk~lyVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D          101 RIARGERTDYVEVFDPVTLLPTADIELPD-----AP----R-FLVGTYPWMTS-LTPDGKTLLFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETT-----CC----C-CCBSCCGGGEE-ECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCC-----cc----c-cccCCCCceEE-EcCCCCEEEEEEcCCCCeEEEEECCC
Confidence                   45699999765   23332111     00    0 00123688887 46666 78999974 78999999887


Q ss_pred             Ccee
Q 013321          169 DDCS  172 (445)
Q Consensus       169 ~~~~  172 (445)
                      ....
T Consensus       170 ~~vv  173 (386)
T 3sjl_D          170 KAFK  173 (386)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            5443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.73  E-value=0.01  Score=61.33  Aligned_cols=108  Identities=13%  Similarity=0.093  Sum_probs=71.5

Q ss_pred             cEEEEeCCC----CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC--------
Q 013321           33 ELLVLDSEN----SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT--------   99 (445)
Q Consensus        33 ~LYVaDs~n----~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~--------   99 (445)
                      .+||++...    +.|.+||...   +++...+-.     |           ..| +|++++||. |||++.        
T Consensus        86 ~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~v-----G-----------~~P-gia~SpDgk~lyVan~~~~~~~~G  145 (426)
T 3c75_H           86 RVYIQDPAHFAAITQQFVIDGST---GRILGMTDG-----G-----------FLP-HPVAAEDGSFFAQASTVFERIARG  145 (426)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTT---TEEEEEEEE-----C-----------SSC-EEEECTTSSCEEEEEEEEEETTEE
T ss_pred             EEEEECCCcCCCCCeEEEEECCC---CEEEEEEEC-----C-----------CCC-ceEECCCCCEEEEEeccccccccC
Confidence            599999865    7999999863   333222111     1           258 999999998 999996        


Q ss_pred             -CCCEEEEEcCCC---cEEEecC-cccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECC-CCeEEEEECCCCcee
Q 013321          100 -MNMAIRKISDTG---VTTIAGG-KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-NQAIREIQLHDDDCS  172 (445)
Q Consensus       100 -~N~rIrkfd~dG---v~tiaGg-~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~g-n~rIr~i~l~~~~~~  172 (445)
                       ..+.|.+||...   +.++.-+ ...           ......|.+++ ++++| .|||++.. .+.|.+|++......
T Consensus       146 ~~~~~VsviD~~t~~vv~~I~v~g~~r-----------~~~g~~P~~~~-~spDGk~lyV~n~~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          146 KRTDYVEVFDPVTFLPIADIELPDAPR-----------FLVGTYQWMNA-LTPDNKNLLFYQFSPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEETTCCC-----------CCBSCCGGGSE-ECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEECCCccc-----------cccCCCcceEE-EcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence             356799999654   2333211 100           00113577877 46665 89999875 789999998875443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.70  E-value=0.011  Score=63.62  Aligned_cols=98  Identities=22%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             CCCceEEEEcC-CCcEEEEeCCC---------------------CeEEEEeCCCCC------CCccEEEecCCCCccc--
Q 013321           20 GMEPFSVAVSP-SGELLVLDSEN---------------------SNIYKISTSLSP------YSRPKLVAGSPEGYYG--   69 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~n---------------------~rI~kid~dg~~------~G~v~~vaG~~~G~~G--   69 (445)
                      +..|.+|+++| +|+|||+-+.+                     +.|+++.++...      ...+.+++|.+....+  
T Consensus       383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~  462 (592)
T 3zwu_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence            36799999998 89999997743                     579999764321      1123455555421111  


Q ss_pred             --CCCCCccCccCCCcceEEEcCCCCEEEEe-C-----------CCCEEEEEcCC-C-cEEEec
Q 013321           70 --HVDGRPRGARMNHPKGLAVDDRGNIYIAD-T-----------MNMAIRKISDT-G-VTTIAG  117 (445)
Q Consensus        70 --~~dG~~~~a~Ln~P~GIavD~dG~LYVAD-~-----------~N~rIrkfd~d-G-v~tiaG  117 (445)
                        ..........|+.|.+|+||+.|+|||+. .           +|+.+..++.. | +..++.
T Consensus       463 ~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~  526 (592)
T 3zwu_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV  526 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE
T ss_pred             cccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe
Confidence              11112234569999999999999999974 3           35677777754 4 455443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.66  E-value=0.0089  Score=62.86  Aligned_cols=106  Identities=10%  Similarity=-0.025  Sum_probs=74.9

Q ss_pred             EEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEE
Q 013321           27 AVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIR  105 (445)
Q Consensus        27 AVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIr  105 (445)
                      +++++|.+||+....+.|..++...   +++......     |          . .|++++++++|. |||++.. +.|+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t---~~~~~~i~~-----g----------~-~~~~v~~spdg~~l~v~~~d-~~V~  203 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDS---KKIVKVIDT-----G----------Y-AVHISRMSASGRYLLVIGRD-ARID  203 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTT---CCEEEEEEC-----S----------T-TEEEEEECTTSCEEEEEETT-SEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCC---ceEEEEEec-----C----------c-ccceEEECCCCCEEEEECCC-CeEE
Confidence            4788899999999999999998763   444332211     1          1 278999999997 9999987 8999


Q ss_pred             EEcC--C-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECC----CC-eEEEEECCCCeEEEEECCCCce
Q 013321          106 KISD--T-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS----SC-SLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       106 kfd~--d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~----dG-~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      ++|.  . +  +.++..+                  ..|.++++ ++    +| .|||++...+.|..++.....+
T Consensus       204 v~D~~~~t~~~~~~i~~g------------------~~p~~va~-sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          204 MIDLWAKEPTKVAEIKIG------------------IEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             EEETTSSSCEEEEEEECC------------------SEEEEEEE-CCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             EEECcCCCCcEEEEEecC------------------CCcceEEe-CCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            9997  3 3  2222211                  24677764 55    55 7888887788899998765443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.65  E-value=0.0063  Score=61.55  Aligned_cols=82  Identities=5%  Similarity=-0.117  Sum_probs=56.6

Q ss_pred             CCCceEEEEcCCCc-EEEEeC---------CCCeEEEEeCCCCCCCccE-EE-ecCCCCcccCCCCCccCccCCCcceEE
Q 013321           20 GMEPFSVAVSPSGE-LLVLDS---------ENSNIYKISTSLSPYSRPK-LV-AGSPEGYYGHVDGRPRGARMNHPKGLA   87 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs---------~n~rI~kid~dg~~~G~v~-~v-aG~~~G~~G~~dG~~~~a~Ln~P~GIa   87 (445)
                      +..| +|+++|||. |||+++         ..+.|.+||...   +++. .+ .+....          .-....|.+|+
T Consensus        65 G~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T---~~vv~~I~v~~~~~----------~~~g~~P~~ia  130 (368)
T 1mda_H           65 AFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT---FLPIADIELPDAPR----------FSVGPRVHIIG  130 (368)
T ss_dssp             CTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT---CCEEEEEEETTSCS----------CCBSCCTTSEE
T ss_pred             CCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---CCEEEEEECCCccc----------cccCCCcceEE
Confidence            3569 999999875 999984         367899999874   3332 22 221100          00135799999


Q ss_pred             EcCCCC-EEEEeCC-CCEEEE--EcCCCcEEE
Q 013321           88 VDDRGN-IYIADTM-NMAIRK--ISDTGVTTI  115 (445)
Q Consensus        88 vD~dG~-LYVAD~~-N~rIrk--fd~dGv~ti  115 (445)
                      +++||. |||++.. .+.|.+  ||...+.++
T Consensus       131 ~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i  162 (368)
T 1mda_H          131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLT  162 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEEETTTEEEEEE
T ss_pred             EcCCCCEEEEEccCCCCeEEEEEEchhhceEE
Confidence            999996 9999976 678888  886544444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.56  E-value=0.045  Score=58.29  Aligned_cols=73  Identities=11%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEc----CCCC
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGN   93 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD----~dG~   93 (445)
                      +..|++++++|||. |||++ ..+.|.+|+.... .+++. .+..      |           ..|.+|+++    ++|.
T Consensus       196 g~~p~~v~~SpDGr~lyv~~-~dg~V~viD~~~~-t~~~v~~i~~------G-----------~~P~~ia~s~~~~pDGk  256 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMK-EPTTVAEIKI------G-----------SEARSIETSKMEGWEDK  256 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSS-SCCEEEEEEC------C-----------SEEEEEEECCSTTCTTT
T ss_pred             CCCccceEECCCCCEEEEEc-CCCeEEEEECCCC-CCcEeEEEec------C-----------CCCceeEEccccCCCCC
Confidence            45799999999987 78887 4679999997310 02221 1110      1           258999999    5886


Q ss_pred             -EEEEeCCCCEEEEEcCCC
Q 013321           94 -IYIADTMNMAIRKISDTG  111 (445)
Q Consensus        94 -LYVAD~~N~rIrkfd~dG  111 (445)
                       |||++...+.|.+||...
T Consensus       257 ~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          257 YAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             EEEEEEEETTEEEEEETTT
T ss_pred             EEEEEEccCCeEEEEECCC
Confidence             999999999999999544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.55  E-value=0.029  Score=57.34  Aligned_cols=116  Identities=11%  Similarity=0.015  Sum_probs=71.6

Q ss_pred             CCCceEEEEcCCCc-EEEEeC---------CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321           20 GMEPFSVAVSPSGE-LLVLDS---------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD   89 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs---------~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD   89 (445)
                      +..|. |+++|||. |||++.         ..+.|.+||..+   .++...+-.+.|...        ..-..|.+++++
T Consensus        78 G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t---~~v~~~I~v~~g~r~--------~~g~~P~~~a~s  145 (386)
T 3sjl_D           78 GFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---LLPTADIELPDAPRF--------LVGTYPWMTSLT  145 (386)
T ss_dssp             CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCCCC--------CBSCCGGGEEEC
T ss_pred             CCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---CeEEEEEECCCcccc--------ccCCCCceEEEc
Confidence            45686 99999987 999985         246799999874   333221111101100        012489999999


Q ss_pred             CCCC-EEEEeCC-CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCce---EEEECCCCeEEEEECCC-Ce
Q 013321           90 DRGN-IYIADTM-NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFD---VVYVGSSCSLLVIDRGN-QA  160 (445)
Q Consensus        90 ~dG~-LYVAD~~-N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~g---I~~vd~dG~LyVaD~gn-~r  160 (445)
                      +||. |||++.. .+.|.+||...   +.++.-.      |+        ....|.+   ++.+..+|.+++++... ++
T Consensus       146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~------g~--------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~  211 (386)
T 3sjl_D          146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------DC--------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  211 (386)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC------SE--------EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC------Cc--------ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence            9998 9999975 78999999655   3344211      10        0012322   23456788888888764 56


Q ss_pred             E
Q 013321          161 I  161 (445)
Q Consensus       161 I  161 (445)
                      +
T Consensus       212 v  212 (386)
T 3sjl_D          212 P  212 (386)
T ss_dssp             C
T ss_pred             E
Confidence            5

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.52  E-value=0.03  Score=58.62  Aligned_cols=155  Identities=9%  Similarity=0.003  Sum_probs=84.1

Q ss_pred             cCCcEEEEEecCCCCCCCceEEEE--cCCCc-EEEEeC-----CCCeEEEEeCCCCCCCccE--EEecCCCCcccCCCCC
Q 013321            5 EGGYTVETVFEGSKFGMEPFSVAV--SPSGE-LLVLDS-----ENSNIYKISTSLSPYSRPK--LVAGSPEGYYGHVDGR   74 (445)
Q Consensus         5 e~G~~v~tv~~Gs~~g~~P~gIAV--dpdG~-LYVaDs-----~n~rI~kid~dg~~~G~v~--~vaG~~~G~~G~~dG~   74 (445)
                      ..+..+.++--|.. +..|..|++  +|+|. +||+..     .++.|.++..+.   |...  .++..+...   ..+.
T Consensus       236 ~~~k~~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~---g~~~~~~vIdi~~~~---v~~~  308 (462)
T 2ece_A          236 RKRKRIHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED---GKWNAEKVIEIPAEP---LEGN  308 (462)
T ss_dssp             TTTEEEEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET---TEEEEEEEEEECCEE---CCSS
T ss_pred             CCCcEeeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC---CceeEEEEEeCCCcc---cccc
Confidence            33444444443322 356888877  88876 899887     788888776552   3221  111111000   0000


Q ss_pred             ccC------ccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCC--C-cEEEecCcccCCCCCCCCCccCcccCCCceEEE
Q 013321           75 PRG------ARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT--G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVY  144 (445)
Q Consensus        75 ~~~------a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~d--G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~  144 (445)
                      +..      +.-+.|.+|.+++||. |||++++.+.|.+||-.  + ...+.--..|-.....+.+.....-..|.++. 
T Consensus       309 lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~-  387 (462)
T 2ece_A          309 LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE-  387 (462)
T ss_dssp             CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE-
T ss_pred             ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE-
Confidence            000      0024699999999998 99999999999999842  2 22221111100000011111111123688887 


Q ss_pred             ECCCC-eEEEEE--------C-----CCCeEEEEECC
Q 013321          145 VGSSC-SLLVID--------R-----GNQAIREIQLH  167 (445)
Q Consensus       145 vd~dG-~LyVaD--------~-----gn~rIr~i~l~  167 (445)
                      ++++| .|||++        .     .+..+.+++.+
T Consensus       388 lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd  424 (462)
T 2ece_A          388 ISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNAN  424 (462)
T ss_dssp             ECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEEC
T ss_pred             EcCCCCEEEEEcCCcccccccccCCCCceEEEEEEec
Confidence            56666 799998        2     45667666544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.49  E-value=0.039  Score=52.88  Aligned_cols=112  Identities=20%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCC----CCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEE
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSP----YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA   97 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~----~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA   97 (445)
                      +-..||++|+|.||++  .++.++++++....    .+. .+.+|.. |..+          |   ..|.+|++|+||++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~-Gw~~----------F---~a~~fD~~G~LYav  104 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNG-GWNQ----------F---QFLFFDPNGYLYAV  104 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECS-CGGG----------C---SEEEECTTSCEEEE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEeccc-cccc----------c---eEEEECCCCCEEEe
Confidence            4569999999999999  57789999975211    111 2333321 1111          1   38999999999999


Q ss_pred             eCCCCEEEEEcC--CCcEEEec--CcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 013321           98 DTMNMAIRKISD--TGVTTIAG--GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  166 (445)
Q Consensus        98 D~~N~rIrkfd~--dGv~tiaG--g~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l  166 (445)
                        .+.+|.|+++  ++-.++++  .+.|. +|+.           -...++.+++|.||.++  ++++++-..
T Consensus       105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~-~gw~-----------~~~~lff~p~G~Lyav~--dg~lyr~~~  161 (236)
T 1tl2_A          105 --SKDKLYKASPPQSDTDNWIARATEVGS-GGWS-----------GFKFLFFHPNGYLYAVH--GQQFYKALP  161 (236)
T ss_dssp             --ETTEEEEESCCCSTTCCHHHHSEEEEC-SSGG-----------GEEEEEECTTSCEEEEE--TTEEEEECC
T ss_pred             --CCCEEEEeCCCcCCCCceeccccEecc-CCCC-----------ceEEEEECCCceEEEEe--CCcEEecCC
Confidence              3589999995  44211111  11111 1111           11334689999999999  455765443

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.42  E-value=0.0073  Score=64.97  Aligned_cols=61  Identities=11%  Similarity=0.216  Sum_probs=49.2

Q ss_pred             CCCceEEEEcCCCcEEE-EeCC-----------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEE
Q 013321           20 GMEPFSVAVSPSGELLV-LDSE-----------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA   87 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYV-aDs~-----------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa   87 (445)
                      ++.|.+|+|+++|+||| +|..           ++.|++++++.   |++..++..+.              +..|+||+
T Consensus       475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t---Gel~~fl~~P~--------------~aEpnGia  537 (592)
T 4a9v_A          475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT---GEIRRFMVGPI--------------GCEVTGIS  537 (592)
T ss_dssp             CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT---CCEEEEEECCT--------------TCEEEEEE
T ss_pred             cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC---CeEEEEEeCCC--------------CccccCCE
Confidence            48899999999999999 8863           56899998863   77777765431              34789999


Q ss_pred             EcCCCC-EEEE
Q 013321           88 VDDRGN-IYIA   97 (445)
Q Consensus        88 vD~dG~-LYVA   97 (445)
                      +.+|+. |||+
T Consensus       538 fSPD~ktLfV~  548 (592)
T 4a9v_A          538 FSPDQKTLFVG  548 (592)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            999987 8887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.41  E-value=0.051  Score=53.52  Aligned_cols=30  Identities=7%  Similarity=0.091  Sum_probs=25.0

Q ss_pred             CCceEEEEcCCCc-EEEEeCC-CCeEEEEeCC
Q 013321           21 MEPFSVAVSPSGE-LLVLDSE-NSNIYKISTS   50 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~-n~rI~kid~d   50 (445)
                      ..|.+|+++|||. |||++.. .+.|.+++..
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~  139 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVA  139 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETT
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECC
Confidence            5799999999986 8999865 6788888765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.38  E-value=0.034  Score=54.76  Aligned_cols=77  Identities=12%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             CCceEEEEcCCCc-EEEEeC---------CCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321           21 MEPFSVAVSPSGE-LLVLDS---------ENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVD   89 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs---------~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD   89 (445)
                      ..| +|+++|||. |||++.         ..+.|.+++...   +++. .+.-.. +..         ..-..|.+|+++
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t---~~~~~~i~~~~-~~~---------~~g~~p~~i~~s  116 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK---LTFEKEISLPP-KRV---------QGLNYDGLFRQT  116 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT---CCEEEEEEECT-TBC---------CBCCCGGGEEEC
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC---CcEEEEEEcCc-ccc---------ccCCCcceEEEC
Confidence            568 999999986 899974         245699998752   2322 221110 000         012579999999


Q ss_pred             CCCC-EEEEeCC-CCEEEEEcCCC
Q 013321           90 DRGN-IYIADTM-NMAIRKISDTG  111 (445)
Q Consensus        90 ~dG~-LYVAD~~-N~rIrkfd~dG  111 (445)
                      ++|. |||+... .+.|.+||...
T Consensus       117 pdg~~l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A          117 TDGKFIVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             TTSSEEEEEEESSSEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCCeEEEEECCC
Confidence            9997 9999876 68899999654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.24  E-value=0.0062  Score=65.72  Aligned_cols=75  Identities=21%  Similarity=0.271  Sum_probs=56.2

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCC---CC----ccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSP---YS----RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG   92 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~---~G----~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG   92 (445)
                      .+|+||+++|||. +||++...++|.+++.....   .|    +-..++-..   .           =..|.+++++++|
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---v-----------G~gP~h~aF~~dG  342 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---L-----------GLGPLHTAFDGRG  342 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---C-----------CSCEEEEEECTTS
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---C-----------CCCcceEEECCCC
Confidence            6899999999997 89999999999999875210   00    000111111   0           1379999999999


Q ss_pred             CEEEEeCCCCEEEEEcC
Q 013321           93 NIYIADTMNMAIRKISD  109 (445)
Q Consensus        93 ~LYVAD~~N~rIrkfd~  109 (445)
                      ++|++-...+.|.++|-
T Consensus       343 ~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          343 NAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             EEEEEETTTTEEEEEEH
T ss_pred             eEEEEEecCCcEEEEEh
Confidence            99999999999999993

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.19  E-value=0.032  Score=56.36  Aligned_cols=106  Identities=9%  Similarity=-0.110  Sum_probs=69.5

Q ss_pred             CcEEEEeCCCC----eEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC-------
Q 013321           32 GELLVLDSENS----NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT-------   99 (445)
Q Consensus        32 G~LYVaDs~n~----rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~-------   99 (445)
                      ..+||++...+    +|..||.+.   +++...+-.     |           ..| +|+++++|. |||++.       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t---~~v~~~i~v-----G-----------~~P-~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGC---GVTLGHSLG-----A-----------FLS-LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEE-----C-----------TTC-EEEECTTSSCEEEEEEEETTTTS
T ss_pred             CeEEEECCccCCccceEEEEECCC---CeEEEEEeC-----C-----------CCC-ceEECCCCCEEEEEccccccccc
Confidence            57999999877    888999873   333221111     1           158 999999987 999984       


Q ss_pred             --CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECC-CCeEEE--EECCC
Q 013321          100 --MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-NQAIRE--IQLHD  168 (445)
Q Consensus       100 --~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~g-n~rIr~--i~l~~  168 (445)
                        ..+.|.+||...   +.++..+..+          .......|.+++ ++++| .|||++.+ ++.|..  |++..
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~v~~~~----------~~~~g~~P~~ia-~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIELPDAP----------RFSVGPRVHIIG-NCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSC----------SCCBSCCTTSEE-ECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcc----------ccccCCCcceEE-EcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence              367899999654   3444221000          001124688887 46666 89999975 677888  77654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.01  E-value=0.054  Score=57.68  Aligned_cols=103  Identities=13%  Similarity=-0.024  Sum_probs=71.5

Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEEE
Q 013321           28 VSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRK  106 (445)
Q Consensus        28 VdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrk  106 (445)
                      +|+.+.+||+....+.|..||..+   +++......     |           ..|++++++++|. |||++. .+.|.+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t---~~v~~~i~~-----g-----------~~p~~v~~SpDGr~lyv~~~-dg~V~v  222 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGST---YEIKTVLDT-----G-----------YAVHISRLSASGRYLFVIGR-DGKVNM  222 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTT---CCEEEEEEC-----S-----------SCEEEEEECTTSCEEEEEET-TSEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCC---CeEEEEEeC-----C-----------CCccceEECCCCCEEEEEcC-CCeEEE
Confidence            445567999999999999999873   444332221     1           2588999999998 899985 568999


Q ss_pred             EcCC---C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEEC----CCC-eEEEEECCCCeEEEEECCCC
Q 013321          107 ISDT---G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG----SSC-SLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       107 fd~d---G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd----~dG-~LyVaD~gn~rIr~i~l~~~  169 (445)
                      ||..   +  +..+..|                  ..|.++++ +    ++| .|||++...+.|..|+....
T Consensus       223 iD~~~~t~~~v~~i~~G------------------~~P~~ia~-s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKIG------------------SEARSIET-SKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             EETTSSSCCEEEEEECC------------------SEEEEEEE-CCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             EECCCCCCcEeEEEecC------------------CCCceeEE-ccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            9973   3  2222211                  13667764 5    355 78999988899999886553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.00  E-value=0.22  Score=46.09  Aligned_cols=125  Identities=10%  Similarity=0.015  Sum_probs=71.9

Q ss_pred             cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCC-
Q 013321           33 ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-  110 (445)
Q Consensus        33 ~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~d-  110 (445)
                      +++|+...++.|..++...   +++......+        +     ....|.+++++++|. |||++...+.|.++|.. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~--------~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~   65 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK---MAVDKVITIA--------D-----AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT---TEEEEEEECT--------T-----CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCC---CcEEEEEEcC--------C-----CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            4566666777777777652   3332222110        0     001388999999995 89999988999999954 


Q ss_pred             Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEEC-----------CCCeEEEEECCCCceee-cC
Q 013321          111 GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDR-----------GNQAIREIQLHDDDCSD-NY  175 (445)
Q Consensus       111 Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~-----------gn~rIr~i~l~~~~~~~-~~  175 (445)
                      +.  .++..+..+            ..-..|.+++ .+++| .||+++.           .++.|+.+++....... ..
T Consensus        66 ~~~~~~~~~~~~~------------~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B           66 GETLGRIDLSTPE------------ERVKSLFGAA-LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             CCEEEEEECCBTT------------EEEECTTCEE-ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             CCeEeeEEcCCcc------------cccccccceE-ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence            42  223221100            0012456666 46666 7888862           35889999987644322 22


Q ss_pred             CCCccceEEEE
Q 013321          176 DDTFHLGIFVL  186 (445)
Q Consensus       176 ~~g~P~gIav~  186 (445)
                      ....+.++++.
T Consensus       133 ~~~~~~~~~~s  143 (337)
T 1pby_B          133 APRQITMLAWA  143 (337)
T ss_dssp             CCSSCCCEEEC
T ss_pred             CCCCcceeEEC
Confidence            22345555544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.95  E-value=0.11  Score=54.49  Aligned_cols=30  Identities=13%  Similarity=0.034  Sum_probs=24.9

Q ss_pred             CCCceEEEECCCC-eEEEEECCCCeEEEEECC
Q 013321          137 SNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH  167 (445)
Q Consensus       137 ~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~  167 (445)
                      ..|.+|.+ +++| .|||++++.+.|..|+..
T Consensus       321 ~~pa~I~l-S~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          321 PLVTDIDI-SLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCCCCEEE-CTTSCEEEEEETTTTEEEEEECS
T ss_pred             CceeEEEE-CCCCCEEEEEeCCCCEEEEEEec
Confidence            46889874 5555 899999999999999975

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.91  E-value=0.14  Score=47.94  Aligned_cols=67  Identities=10%  Similarity=0.090  Sum_probs=41.5

Q ss_pred             cceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEE
Q 013321           83 PKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR  162 (445)
Q Consensus        83 P~GIavD~dG~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr  162 (445)
                      ...+++|.+|.|||+.   +.|.++|.+|..........               ....+++ .+.+|.|||+.. ++.|.
T Consensus       179 ~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~---------------~~~~~~~-~~~~g~l~v~t~-~~gl~  238 (330)
T 3hxj_A          179 TSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAGY---------------WTVTRPA-ISEDGTIYVTSL-DGHLY  238 (330)
T ss_dssp             CSCCEECTTCCEEEES---SSEEEECTTSCEEEEECCSS---------------CCCSCCE-ECTTSCEEEEET-TTEEE
T ss_pred             eeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccCC---------------cceeceE-ECCCCeEEEEcC-CCeEE
Confidence            3467888899999998   67999997774333211100               1123333 577778888765 45677


Q ss_pred             EEECCCC
Q 013321          163 EIQLHDD  169 (445)
Q Consensus       163 ~i~l~~~  169 (445)
                      +++..+.
T Consensus       239 ~~~~~g~  245 (330)
T 3hxj_A          239 AINPDGT  245 (330)
T ss_dssp             EECTTSC
T ss_pred             EECCCCC
Confidence            7765443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.85  E-value=0.054  Score=56.45  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=69.1

Q ss_pred             CCceEEEEcCC----CcEEEEeCCC------------CeEEEEeCCCC---C--CCccEEEecCCCCcccCCCCCccCcc
Q 013321           21 MEPFSVAVSPS----GELLVLDSEN------------SNIYKISTSLS---P--YSRPKLVAGSPEGYYGHVDGRPRGAR   79 (445)
Q Consensus        21 ~~P~gIAVdpd----G~LYVaDs~n------------~rI~kid~dg~---~--~G~v~~vaG~~~G~~G~~dG~~~~a~   79 (445)
                      ..+.|||++|+    |.|||+-+..            .+|.|+..+..   .  .....++...+...           .
T Consensus        69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~-----------~  137 (463)
T 2wg3_C           69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH-----------R  137 (463)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS-----------S
T ss_pred             CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC-----------C
Confidence            35789999995    8899986521            48888876421   1  12233333221000           1


Q ss_pred             CCCcceEEEcCCCCEEEE--eCC---------------CCEEEEEcCCCcE-----EEe-cCcccCCCCCCCCC--ccCc
Q 013321           80 MNHPKGLAVDDRGNIYIA--DTM---------------NMAIRKISDTGVT-----TIA-GGKWSRGVGHVDGP--SEDA  134 (445)
Q Consensus        80 Ln~P~GIavD~dG~LYVA--D~~---------------N~rIrkfd~dGv~-----tia-Gg~~G~g~G~~dgp--~~~a  134 (445)
                      -..-..|++++||.|||+  |..               ..+|.||+.+|..     .+. .+...   +.....  .-..
T Consensus       138 ~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~---~~~~~~~eI~a~  214 (463)
T 2wg3_C          138 KHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHF---NSTNQPPEVFAH  214 (463)
T ss_dssp             SSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTT---TCSSSCTTEEEE
T ss_pred             cccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCc---CCCCCcccEEEE
Confidence            234568999999999998  433               3579999988731     111 11100   000000  0112


Q ss_pred             ccCCCceEEEECCC----C--eEEEEEC
Q 013321          135 KFSNDFDVVYVGSS----C--SLLVIDR  156 (445)
Q Consensus       135 ~f~~P~gI~~vd~d----G--~LyVaD~  156 (445)
                      -+.+|+++++...+    |  .+|++|.
T Consensus       215 G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          215 GLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             CCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CCCCcceEEECCCCCCcccceEEEeccc
Confidence            46799999865443    4  5677886

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.80  E-value=0.088  Score=53.34  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=55.2

Q ss_pred             CCCCceEEEEcC-CCcEEEEeCCCCeEEEEeCC--CCCCCccEEEecCCCCcccCCCCCccCccCC-CcceEEEc--CC-
Q 013321           19 FGMEPFSVAVSP-SGELLVLDSENSNIYKISTS--LSPYSRPKLVAGSPEGYYGHVDGRPRGARMN-HPKGLAVD--DR-   91 (445)
Q Consensus        19 ~g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~d--g~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln-~P~GIavD--~d-   91 (445)
                      .+.+|.|+++|+ .|.|||++... .|++++.+  +...+++...++..              .|. .|.||++.  ++ 
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g--------------~l~aDvEGLai~~~~~g  242 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGR--------------HLTRDIEGLTIYYAADG  242 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSS--------------SBCSCEEEEEEEECGGG
T ss_pred             CCCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCC--------------ccccCcceEEEEecCCC
Confidence            456899999998 68999999875 49999954  22122233232211              133 68999995  33 


Q ss_pred             -CCEEEEeCCCCEEEEEcCCC
Q 013321           92 -GNIYIADTMNMAIRKISDTG  111 (445)
Q Consensus        92 -G~LYVAD~~N~rIrkfd~dG  111 (445)
                       |.|+|++.+++...+|+..+
T Consensus       243 ~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          243 KGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             CEEEEEEEGGGTEEEEEESST
T ss_pred             CEEEEEEcCCCCEEEEEECCC
Confidence             45999999999999999763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.76  E-value=0.24  Score=46.26  Aligned_cols=70  Identities=13%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321           82 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI  161 (445)
Q Consensus        82 ~P~GIavD~dG~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI  161 (445)
                      ...++++|++|.|||+.. ++.|.+++.+|..........   .            .+..++ ++.++.|||+.. ++.|
T Consensus       216 ~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~---~------------~~~~~~-~~~~g~l~v~t~-~ggl  277 (330)
T 3hxj_A          216 TVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTGK---R------------IESSPV-IGNTDTIYFGSY-DGHL  277 (330)
T ss_dssp             CCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEECSS---C------------CCSCCE-ECTTSCEEEECT-TCEE
T ss_pred             ceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCCC---C------------ccccce-EcCCCeEEEecC-CCCE
Confidence            456889999999999976 568999998774332111100   0            011223 467788888764 4578


Q ss_pred             EEEECCCC
Q 013321          162 REIQLHDD  169 (445)
Q Consensus       162 r~i~l~~~  169 (445)
                      .+++..+.
T Consensus       278 ~~~d~~g~  285 (330)
T 3hxj_A          278 YAINPDGT  285 (330)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCc
Confidence            88876443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.74  E-value=0.99  Score=45.63  Aligned_cols=174  Identities=11%  Similarity=0.088  Sum_probs=94.7

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCC----C----cEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCc
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSPS----G----ELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRP   75 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdpd----G----~LYVaDs~--n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~   75 (445)
                      +|..+..+-.     ..+++|.+-++    |    -+|+++..  +++|..|+.+.. .+.+..+.+..  .       .
T Consensus        58 ~G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~~~l~~i~~~~--~-------p  122 (355)
T 3amr_A           58 DGKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-NGTLQSMTDPD--H-------P  122 (355)
T ss_dssp             TSCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-TCCEEECSCTT--S-------C
T ss_pred             CCcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-CCceeeccccc--c-------C
Confidence            4555555422     25677777662    2    25888988  898888754311 13333332110  0       0


Q ss_pred             cCccCCCcceEEE--cCC-CC--EEEEeCCCCEEEEEc----CCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEE
Q 013321           76 RGARMNHPKGLAV--DDR-GN--IYIADTMNMAIRKIS----DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV  145 (445)
Q Consensus        76 ~~a~Ln~P~GIav--D~d-G~--LYVAD~~N~rIrkfd----~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~v  145 (445)
                      ....+..|.|||+  ++. |.  +||.+.. +++..+.    .+| +..-.-.....             -..|.++++.
T Consensus       123 v~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~l-------------gsq~EgcvvD  188 (355)
T 3amr_A          123 IATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKM-------------NSQTEGMAAD  188 (355)
T ss_dssp             EECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEEC-------------SSCEEEEEEE
T ss_pred             cCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecC-------------CCCcceEEEc
Confidence            0123678999999  764 53  7788875 7777643    233 21100000000             0246677777


Q ss_pred             CCCCeEEEEECCCCeEEEEECCCCc-----ee-ecCCC---CccceEEEEeccceEEEEEEeecCccceeeec
Q 013321          146 GSSCSLLVIDRGNQAIREIQLHDDD-----CS-DNYDD---TFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS  209 (445)
Q Consensus       146 d~dG~LyVaD~gn~rIr~i~l~~~~-----~~-~~~~~---g~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s  209 (445)
                      +..+.|||++-..+ ||+|+.+...     .. .....   .-+.||++.....--+|+++.-|..-.-.+|.
T Consensus       189 d~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          189 DEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             TTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             CCCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            77899999999854 9999966322     11 11112   24677877644433456666555554334443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.72  E-value=0.063  Score=54.85  Aligned_cols=106  Identities=18%  Similarity=0.281  Sum_probs=72.4

Q ss_pred             CCceEEEEcCC----C-cEEEEeCCCCeEEEEeC----CCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc-C
Q 013321           21 MEPFSVAVSPS----G-ELLVLDSENSNIYKIST----SLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD-D   90 (445)
Q Consensus        21 ~~P~gIAVdpd----G-~LYVaDs~n~rI~kid~----dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD-~   90 (445)
                      ..-.|||++|+    + .||++-..+.+++++..    +.+....+..+ |.    .|.         .....++++| .
T Consensus       220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~----kg~---------~s~~~~~~~D~~  285 (381)
T 3q6k_A          220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GN----RGK---------YNDAIALAYDPK  285 (381)
T ss_dssp             CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EE----CCT---------TCCEEEEEECTT
T ss_pred             cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-ee----cCC---------CCCcceEEEeCC
Confidence            35679999986    3 49999988889999962    21111223322 21    110         1123367887 7


Q ss_pred             CCCEEEEeCCCCEEEEEcCCC-c------EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC
Q 013321           91 RGNIYIADTMNMAIRKISDTG-V------TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  156 (445)
Q Consensus        91 dG~LYVAD~~N~rIrkfd~dG-v------~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~  156 (445)
                      +|+||+++..++.|.+.++++ .      .+++               .+..|.+|.++. ++.+|.|||...
T Consensus       286 ~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~---------------~d~~l~~pd~~~-i~~~g~Lwv~sn  342 (381)
T 3q6k_A          286 TKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVY---------------TSSRFVFGTDIS-VDSKGGLWFMSN  342 (381)
T ss_dssp             TCEEEEEESSSSEEEEEETTSCSBCGGGEEEEE---------------ECTTCCSEEEEE-ECTTSCEEEEEC
T ss_pred             CCeEEEEeccCCeEEEEeCCCCccccCceEEEE---------------ECCCccccCeEE-ECCCCeEEEEEC
Confidence            999999999999999999876 2      2221               123788999996 788999999874

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.66  E-value=0.088  Score=51.52  Aligned_cols=109  Identities=10%  Similarity=0.130  Sum_probs=68.3

Q ss_pred             EEEEcCC-CcEEEEe---CCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCC-CCEEEEeC
Q 013321           25 SVAVSPS-GELLVLD---SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADT   99 (445)
Q Consensus        25 gIAVdpd-G~LYVaD---s~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G~LYVAD~   99 (445)
                      +.++.++ +.||++|   .++..|++++.+|+   ....+....               .     ++++++ +.||++|.
T Consensus       108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs---~~~~lt~~~---------------~-----~~~~~~g~~iy~t~~  164 (302)
T 3s25_A          108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE---EKKKIKNHY---------------L-----FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEETTSC---CCEEEESSC---------------C-----CCSEEETTEEEEECT
T ss_pred             ccEEEEeCCEEEEEeecCCCCceEEEEECCCC---CeEEEeCCC---------------c-----eEeeEECCEEEEEeC
Confidence            3355553 4699999   67889999999863   233343221               0     123333 45999998


Q ss_pred             CCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCCCceeecCC
Q 013321          100 MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSDNYD  176 (445)
Q Consensus       100 ~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g-n~rIr~i~l~~~~~~~~~~  176 (445)
                      +...|.+++.+|  ..++..+                    +..+.+++..+.||.+|.. +.+|.++++++........
T Consensus       165 g~~~Iy~~~l~g~~~~~l~~~--------------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~  224 (302)
T 3s25_A          165 KNGQLYRYDTASQSEALFYDC--------------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE  224 (302)
T ss_dssp             TTCCEEEEETTTTEEEEEECS--------------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC
T ss_pred             CCceEEEEECCCCCEEEEeCC--------------------CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC
Confidence            888999999877  3333111                    0011223456788888865 3689999998866555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.63  E-value=0.39  Score=51.95  Aligned_cols=159  Identities=9%  Similarity=0.030  Sum_probs=92.4

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ....+|+.|++|+|||+-.++ -|.++++++   +++..+.. .       .+.    .-+...+|+.|++|+|||+-. 
T Consensus       495 ~~i~~i~~d~~g~lWigt~~~-Gl~~~~~~~---~~~~~~~~-~-------~~l----~~~~i~~i~~d~~g~lWi~T~-  557 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFGG-GVGIYTPDM---QLVRKFNQ-Y-------EGF----CSNTINQIYRSSKGQMWLATG-  557 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESSS-CEEEECTTC---CEEEEECT-T-------TTC----SCSCEEEEEECTTSCEEEEET-
T ss_pred             ceeEEEEEcCCCCEEEEEcCC-CEEEEeCCC---CeEEEccC-C-------CCC----CCCeeEEEEECCCCCEEEEEC-
Confidence            457889999999999997544 488898763   33443321 1       110    123456899999999999976 


Q ss_pred             CCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec-CCCC
Q 013321          101 NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-YDDT  178 (445)
Q Consensus       101 N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~-~~~g  178 (445)
                      ++-|.++|... ....-...        ++...    ....+++ .|.+|.||++.  ++-|.+|++........ ...|
T Consensus       558 ~Glv~~~d~~~~~~~~~~~~--------~gl~~----~~i~~i~-~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~~~dG  622 (781)
T 3v9f_A          558 EGLVCFPSARNFDYQVFQRK--------EGLPN----THIRAIS-EDKNGNIWAST--NTGISCYITSKKCFYTYDHSNN  622 (781)
T ss_dssp             TEEEEESCTTTCCCEEECGG--------GTCSC----CCCCEEE-ECSSSCEEEEC--SSCEEEEETTTTEEEEECGGGT
T ss_pred             CCceEEECCCCCcEEEcccc--------CCCCC----ceEEEEE-ECCCCCEEEEc--CCceEEEECCCCceEEecccCC
Confidence            33338998654 22221111        11111    1124554 68899999995  45689999876544332 2223


Q ss_pred             ccceEEEEeccceEEEEEEeecCccceeeeccCCCccccCCC
Q 013321          179 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRG  220 (445)
Q Consensus       179 ~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~~~~~~~~~~  220 (445)
                      .+..       .+.  .-+++...-|.+.|...+.-..|++.
T Consensus       623 l~~~-------~f~--~~~~~~~~~G~l~~g~~~Gl~~f~p~  655 (781)
T 3v9f_A          623 IPQG-------SFI--SGCVTKDHNGLIYFGSINGLCFFNPD  655 (781)
T ss_dssp             CCSS-------CEE--EEEEEECTTSCEEEEETTEEEEECSC
T ss_pred             cccc-------ccc--cCceEECCCCEEEEECCCceEEEChh
Confidence            3221       111  12344456677777777655545543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.59  E-value=0.17  Score=54.63  Aligned_cols=159  Identities=11%  Similarity=0.021  Sum_probs=91.3

Q ss_pred             CCCCceEEEE-c-CCCc-EEEEe-----------------CCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCc
Q 013321           19 FGMEPFSVAV-S-PSGE-LLVLD-----------------SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGA   78 (445)
Q Consensus        19 ~g~~P~gIAV-d-pdG~-LYVaD-----------------s~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a   78 (445)
                      .+..|+|+++ . |++. ||++.                 ...+.|..||.+.   .++...+-.        +|     
T Consensus       132 ~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t---~~v~~qI~V--------gg-----  195 (595)
T 1fwx_A          132 NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK---WEVAWQVLV--------SG-----  195 (595)
T ss_dssp             SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT---TEEEEEEEE--------SS-----
T ss_pred             CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC---CeEEEEEEe--------CC-----
Confidence            4467999998 4 6655 78884                 2335777777762   222211111        11     


Q ss_pred             cCCCcceEEEcCCCC-EEEEeCCC--------------CEEEEEc--------CCC-------cEEEecCcccCCCCCCC
Q 013321           79 RMNHPKGLAVDDRGN-IYIADTMN--------------MAIRKIS--------DTG-------VTTIAGGKWSRGVGHVD  128 (445)
Q Consensus        79 ~Ln~P~GIavD~dG~-LYVAD~~N--------------~rIrkfd--------~dG-------v~tiaGg~~G~g~G~~d  128 (445)
                         +|.+++++++|. +|++....              ..|.++|        ++|       +..|-+... .  +.. 
T Consensus       196 ---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~-~--~~~-  268 (595)
T 1fwx_A          196 ---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE-A--SSL-  268 (595)
T ss_dssp             ---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG-G--CCS-
T ss_pred             ---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCccc-C--Cce-
Confidence               588999999888 88888765              3466666        223       222211110 0  000 


Q ss_pred             CCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc-------------eeecCCCCccceEEEEeccceEEE
Q 013321          129 GPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD-------------CSDNYDDTFHLGIFVLVAAAFFGY  194 (445)
Q Consensus       129 gp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~-------------~~~~~~~g~P~gIav~~~a~~vg~  194 (445)
                      -......=..|+++. +++|| .+||++.+.++|..|+.....             .....-...|..++....+  .+|
T Consensus       269 ~~~~Ipvg~~PhGv~-~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG--~aY  345 (595)
T 1fwx_A          269 FTRYIPIANNPHGCN-MAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG--NAY  345 (595)
T ss_dssp             SEEEEEEESSCCCEE-ECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS--EEE
T ss_pred             eEEEEecCCCceEEE-EcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC--eEE
Confidence            000000114799997 57777 699999999999999988531             1222223357777776654  456


Q ss_pred             EEEeecCcc
Q 013321          195 MLALLQRRV  203 (445)
Q Consensus       195 ~~~ll~~~~  203 (445)
                      .+..+-.-+
T Consensus       346 ~t~~ldsqV  354 (595)
T 1fwx_A          346 TSLFLDSQV  354 (595)
T ss_dssp             EEETTTTEE
T ss_pred             EEEecCCcE
Confidence            555443333

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.06  E-value=0.38  Score=46.91  Aligned_cols=63  Identities=16%  Similarity=0.145  Sum_probs=42.4

Q ss_pred             EcCCCC-EEEE-eCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEE
Q 013321           88 VDDRGN-IYIA-DTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE  163 (445)
Q Consensus        88 vD~dG~-LYVA-D~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~  163 (445)
                      ++++|. ||.+ |.....|.+++.+|  ..++..+.                   ...|.  --++.||++|...+.|.+
T Consensus       230 ~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~~-------------------~~~i~--i~~d~Iy~td~~~~~i~~  288 (302)
T 3s25_A          230 YNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGE-------------------FCNIN--VTSQYVYFTDFVSNKEYC  288 (302)
T ss_dssp             EEEETTEEEEEECSSSCEEEEEETTSCCCEEEEESC-------------------EEEEE--ECSSEEEEEETTTCCEEE
T ss_pred             EEECCCEEEEEECCCCcEEEEEECCCCccEEeeCCc-------------------cceEE--EeCCEEEEEECCCCeEEE
Confidence            555554 8876 66678899999888  34443210                   11333  256799999988888999


Q ss_pred             EECCCCce
Q 013321          164 IQLHDDDC  171 (445)
Q Consensus       164 i~l~~~~~  171 (445)
                      +.+++...
T Consensus       289 ~~~dGs~~  296 (302)
T 3s25_A          289 TSTQNPDT  296 (302)
T ss_dssp             EESSSCCS
T ss_pred             EECCCCCc
Confidence            99877543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.91  E-value=2.2  Score=39.01  Aligned_cols=113  Identities=7%  Similarity=-0.039  Sum_probs=71.3

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....++++++|.++++-..++.|..++...   ++.......                -.....+++.++|.++++-..+
T Consensus       185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          185 GASCIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQHDF----------------TSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEECCC---CceEeeecC----------------CCceEEEEECCCCCEEEEEcCC
Confidence            467889988888777777788888888752   332222111                1135689999999877666667


Q ss_pred             CEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          102 MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       102 ~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      +.|+.+|...  ...+...                 -....++. ..+++.++++-..++.|+.+++.....
T Consensus       246 ~~i~~~~~~~~~~~~~~~~-----------------~~~v~~~~-~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          246 SNVEVLHVNKPDKYQLHLH-----------------ESCVLSLK-FAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             SCEEEEETTSSCEEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CcEEEEECCCCCeEEEcCC-----------------ccceeEEE-ECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            8899998654  2222110                 01233444 466777666666677888888765443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.68  E-value=0.64  Score=44.50  Aligned_cols=112  Identities=20%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc---EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           24 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP---KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        24 ~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v---~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..+.+|++|.||++  .+++|+|+++..+.....   .+.+|..    |          ...=..|+++++|.||.++  
T Consensus        91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~----g----------w~~~~~lff~p~G~Lyav~--  152 (236)
T 1tl2_A           91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG----G----------WSGFKFLFFHPNGYLYAVH--  152 (236)
T ss_dssp             SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS----S----------GGGEEEEEECTTSCEEEEE--
T ss_pred             eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccC----C----------CCceEEEEECCCceEEEEe--
Confidence            47899999999999  358999999742111111   1222221    1          1112689999999999998  


Q ss_pred             CCEEEEEc-CCC-------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          101 NMAIRKIS-DTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       101 N~rIrkfd-~dG-------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      +.+|.+-. +.+       ..+..+.     .+.           .-.-+++.+++|.||.+.  +++|++...+...|
T Consensus       153 dg~lyr~~~P~~~~~~wl~~~~~~g~-----~g~-----------~~yr~l~f~~~G~l~~v~--~g~~Y~~~~p~~~~  213 (236)
T 1tl2_A          153 GQQFYKALPPVSNQDNWLARATKIGQ-----GGW-----------DTFKFLFFSSVGTLFGVQ--GGKFYEDYPPSYAY  213 (236)
T ss_dssp             TTEEEEECCCSSTTCCHHHHCEEEES-----SSG-----------GGEEEEEECTTSCEEEEE--TTEEEEESCCCSTT
T ss_pred             CCcEEecCCCCCCCcccccccceecc-----CCc-----------ceEEEEEECCCCcEEEEe--CCeEEecCCccccC
Confidence            45575533 321       1111110     010           011123468999999999  78999997665443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.53  E-value=2.7  Score=38.40  Aligned_cols=113  Identities=10%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      ...++++++|.++++-..++.|..++...   ++.......               .-.....|+++++|.++++=..++
T Consensus       144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~---~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~dg  205 (337)
T 1gxr_A          144 CYALAISPDSKVCFSCCSDGNIAVWDLHN---QTLVRQFQG---------------HTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECC---------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCC---Cceeeeeec---------------ccCceEEEEECCCCCEEEEEecCC
Confidence            56788888877766666677888887652   232222111               012356899999998766666678


Q ss_pred             EEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321          103 AIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       103 rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      .|+.+|... ........        .        .....+. ..+++.++++-..++.|+.+++....
T Consensus       206 ~i~~~d~~~~~~~~~~~~--------~--------~~v~~~~-~s~~~~~l~~~~~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          206 TVRSWDLREGRQLQQHDF--------T--------SQIFSLG-YCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             EEEEEETTTTEEEEEEEC--------S--------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             cEEEEECCCCceEeeecC--------C--------CceEEEE-ECCCCCEEEEEcCCCcEEEEECCCCC
Confidence            999999554 22111100        0        0123333 45566655555556777777766543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=94.40  E-value=2.8  Score=42.28  Aligned_cols=110  Identities=13%  Similarity=0.205  Sum_probs=70.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ...+|+++|++.++++-..++.|..++.++   ..+..+.+.                -.....|++.++|.++++=..+
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~----------------~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQTLTGH----------------SSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTS---CEEEEEECC----------------SSCEEEEEECTTSCEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEEEEcCC----------------CCCEEEEEEcCCCCEEEEEeCC
Confidence            457899999998888877888898888763   122333221                1134689999999977766667


Q ss_pred             CEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          102 MAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       102 ~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      +.|+..|.+|.  .++.+..                 ....+|+ ..++|.++++-...+.|+.++..+
T Consensus       489 ~~i~iw~~~~~~~~~~~~h~-----------------~~v~~l~-~s~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          489 KTVKLWNRNGQLLQTLTGHS-----------------SSVRGVA-FSPDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             SEEEEEETTSCEEEEEECCS-----------------SCEEEEE-ECTTSSCEEEEETTSEEEEECTTS
T ss_pred             CEEEEEcCCCCEEEEEeCCC-----------------CCEEEEE-EcCCCCEEEEEECcCEEEEEeCCC
Confidence            88999998773  3332210                 1123443 456666666555566777776544

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.78  E-value=0.18  Score=51.46  Aligned_cols=64  Identities=13%  Similarity=0.266  Sum_probs=49.8

Q ss_pred             CceEEEEc-CCCcEEEEeCCCCeEEEEeCCC-CC-CCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           22 EPFSVAVS-PSGELLVLDSENSNIYKISTSL-SP-YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        22 ~P~gIAVd-pdG~LYVaDs~n~rI~kid~dg-~~-~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      +-.++++| .+|.||+++..++.|.+++.++ .+ .+...+++-.+              +|.+|.+|+++.+|.|||.-
T Consensus       276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~--------------~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS--------------RFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             CEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT--------------TCCSEEEEEECTTSCEEEEE
T ss_pred             CcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC--------------CccccCeEEECCCCeEEEEE
Confidence            44578897 6899999999999999999874 22 13345555432              68899999999999999976


Q ss_pred             C
Q 013321           99 T   99 (445)
Q Consensus        99 ~   99 (445)
                      .
T Consensus       342 n  342 (381)
T 3q6k_A          342 N  342 (381)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=93.62  E-value=5  Score=38.00  Aligned_cols=115  Identities=14%  Similarity=0.169  Sum_probs=74.1

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....++++|+|.++++-..++.|..++...   ++.......      +         -.....|++.++|.++++=...
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~---~~~~~~~~~------h---------~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIAT---GKLLHTLEG------H---------AMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECC------C---------SSCCCEEEECTTSCEEEEECTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEEEEEcc------c---------CCceeEEEEcCCCCEEEEEcCC
Confidence            457899999999888888888999998763   333222211      1         1123589999999977776677


Q ss_pred             CEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 013321          102 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  172 (445)
Q Consensus       102 ~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~  172 (445)
                      +.|+.+|...   +.++.+..                 ....++. ..+++.++++-...+.|+..++....+.
T Consensus       228 g~i~iwd~~~~~~~~~~~~h~-----------------~~v~~~~-~sp~~~~l~s~s~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          228 GYIKIYDVQHANLAGTLSGHA-----------------SWVLNVA-FCPDDTHFVSSSSDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             SCEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CeEEEEECCCcceeEEEcCCC-----------------CceEEEE-ECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence            8899998543   22322110                 1123444 4667777777667778888887665543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.50  E-value=1.2  Score=41.21  Aligned_cols=110  Identities=14%  Similarity=0.044  Sum_probs=68.9

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ...+|+++++|.++++-..++.|..++...   ++........               -..-.+|++.++|+++++=..+
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~h---------------~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLN---GERLGTLDGH---------------TGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTT---CCEEEEECCC---------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---chhhhhhhhc---------------CCcEEEEEEcCCCCEEEEEeCC
Confidence            468999999999888877788999998652   3332222110               1134588999999877666667


Q ss_pred             CEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC-----CeEEEEECCC
Q 013321          102 MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-----QAIREIQLHD  168 (445)
Q Consensus       102 ~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn-----~rIr~i~l~~  168 (445)
                      +.|+.+|.. +  +.++...                  ....++. ..+++.++++-..+     +.|+.+++..
T Consensus        96 g~i~iwd~~~~~~~~~~~~~------------------~~v~~~~-~~~~~~~l~~~~~~~~~~~g~i~~~d~~~  151 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWKSP------------------VPVKRVE-FSPCGNYFLAILDNVMKNPGSINIYEIER  151 (369)
T ss_dssp             TEEEEEETTTCCEEEEEECS------------------SCEEEEE-ECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEeecC------------------CCeEEEE-EccCCCEEEEecCCccCCCCEEEEEEecC
Confidence            889999854 3  2222110                  1123343 46666666655555     7777777644

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.42  E-value=3.2  Score=40.12  Aligned_cols=122  Identities=11%  Similarity=0.006  Sum_probs=77.7

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....|+++|+|.++++-+.++.|..++...   +....+.......        ....+..-..+++.++|.++++=..+
T Consensus       251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~---~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~~g~~d  319 (380)
T 3iz6_a          251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRT---GHQLQVYNREPDR--------NDNELPIVTSVAFSISGRLLFAGYSN  319 (380)
T ss_dssp             CCCEEEECTTSSEEEEECSSSCEEEEETTT---TEEEEEECCCCSS--------SCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred             CeEEEEEecCCCeEEEEcCCCeEEEEECCC---CcEEEEecccccc--------cccccCceEEEEECCCCCEEEEEECC
Confidence            356899999999989888889999998763   3333322211000        00122335689999999988888888


Q ss_pred             CEEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          102 MAIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       102 ~rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      +.|+.+|.. +.  ..+.....    +         .-..-.++. ..++|.++++-...+.|+..++.+
T Consensus       320 g~i~vwd~~~~~~~~~~~~~~~----~---------h~~~v~~l~-~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          320 GDCYVWDTLLAEMVLNLGTLQN----S---------HEGRISCLG-LSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             SCEEEEETTTCCEEEEECCSCS----S---------CCCCCCEEE-ECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCEEEEECCCCceEEEEecccC----C---------CCCceEEEE-ECCCCCEEEEeeCCCCEEEEecCC
Confidence            999999953 32  22211000    0         111234554 578888888888788888888654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=93.26  E-value=2.5  Score=45.62  Aligned_cols=158  Identities=9%  Similarity=0.043  Sum_probs=90.3

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .....|+.|++|.|||+..  +-|.+++..+   +.+ .+.... ..    .+ +   .-+...+|+.|++|+|||+-..
T Consensus       498 ~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~---~~~-~~~~~~-~~----~~-l---~~~~i~~i~~d~~g~lWigT~~  562 (795)
T 4a2l_A          498 KQITTLFRDSHKRLWIGGE--EGLSVFKQEG---LDI-QKASIL-PV----SN-V---TKLFTNCIYEASNGIIWVGTRE  562 (795)
T ss_dssp             CCEEEEEECTTCCEEEEES--SCEEEEEEET---TEE-EECCCS-CS----CG-G---GGSCEEEEEECTTSCEEEEESS
T ss_pred             ceEEEEEECCCCCEEEEeC--CceEEEeCCC---CeE-EEecCC-CC----CC-C---CCCeeEEEEECCCCCEEEEeCC
Confidence            3467899999999999886  4688888753   223 221100 00    00 0   1234568999999999998764


Q ss_pred             CCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-cCCCC
Q 013321          101 NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDT  178 (445)
Q Consensus       101 N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~-~~~~g  178 (445)
                        .|.++|... ....-...        ++...    ....+| +.|.+|.||++.  ++-|.++++....... ....|
T Consensus       563 --Gl~~~d~~~~~~~~~~~~--------~gl~~----~~i~~i-~~d~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~dG  625 (795)
T 4a2l_A          563 --GFYCFNEKDKQIKRYNTT--------NGLPN----NVVYGI-LEDSFGRLWLST--NRGISCFNPETEKFRNFTESDG  625 (795)
T ss_dssp             --CEEEEETTTTEEEEECGG--------GTCSC----SCEEEE-EECTTSCEEEEE--TTEEEEEETTTTEEEEECGGGT
T ss_pred             --CceeECCCCCcEEEeCCC--------CCCch----hheEEE-EECCCCCEEEEc--CCceEEEcCCCCcEEEcCCcCC
Confidence              699999755 33221111        11111    112345 468899999997  4778999987655433 22223


Q ss_pred             ccceEEEEeccceEEEEEEeecCccceeeeccCCCccccCC
Q 013321          179 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKR  219 (445)
Q Consensus       179 ~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~~~~~~~~~  219 (445)
                      .+..       .+  ..-+++...-|.+.|...+.-..|++
T Consensus       626 l~~~-------~f--~~~~~~~~~~G~l~~g~~~Gl~~~~p  657 (795)
T 4a2l_A          626 LQSN-------QF--NTASYCRTSVGQMYFGGINGITTFRP  657 (795)
T ss_dssp             CSCS-------CE--EEEEEEECTTSCEEEEETTEEEEECG
T ss_pred             Cccc-------cC--ccCceeECCCCeEEEecCCceEEEcH
Confidence            3321       11  11234445666777776665444444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.86  E-value=5  Score=38.09  Aligned_cols=113  Identities=9%  Similarity=-0.034  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT   99 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~   99 (445)
                      .....++++++|.++++-..++.|..++..+   ..+..+.+.                -....+|++.++|. ++++-.
T Consensus       164 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          164 YWYCCVDVSVSRQMLATGDSTGRLLLLGLDG---HEIFKEKLH----------------KAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTS---CEEEEEECS----------------SSCEEEEEECSSCTTEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEECCCCCEEEEECCC---CEEEEeccC----------------CCcEEEEEECCCCCCEEEEEe
Confidence            3467899999988888887888999998752   122233221                12356899999998 777766


Q ss_pred             CCCEEEEEcCC-----CcEEEecCcccCCCCCCCCCccCcccCCCceEEEECC-CCeEEEEECCCCeEEEEECCCC
Q 013321          100 MNMAIRKISDT-----GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       100 ~N~rIrkfd~d-----Gv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~-dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      ..+.|+.+|..     +......+.                -....++. ..+ ++.++++-...+.|+.+++...
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~----------------~~~v~~~~-~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          225 VDATVKLWDLRNIKDKNSYIAEMPH----------------EKPVNAAY-FNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             TTSEEEEEEGGGCCSTTCEEEEEEC----------------SSCEEEEE-ECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             CCCEEEEEeCCCCCcccceEEEecC----------------CCceEEEE-EcCCCCCEEEEEcCCCcEEEEECCCC
Confidence            77889998843     211111010                01223444 455 7777776667788888887653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=92.85  E-value=6.5  Score=37.16  Aligned_cols=112  Identities=13%  Similarity=0.193  Sum_probs=70.1

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      ...++++|+|.++++...++.|..++...   ++........               -.....+++.++|.++++=..++
T Consensus       125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~---~~~~~~~~~~---------------~~~v~~~~~spdg~~lasg~~dg  186 (321)
T 3ow8_A          125 AWTLAFSPDSQYLATGTHVGKVNIFGVES---GKKEYSLDTR---------------GKFILSIAYSPDGKYLASGAIDG  186 (321)
T ss_dssp             CCCEEECTTSSEEEEECTTSEEEEEETTT---CSEEEEEECS---------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEEcCC---CceeEEecCC---------------CceEEEEEECCCCCEEEEEcCCC
Confidence            45788999988888888888888888753   2222211110               11345899999999777666678


Q ss_pred             EEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321          103 AIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       103 rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      .|+.+|.. +  +.++.+..                 ....++. ..+++.++++-...+.|+.+++....
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~-----------------~~v~~l~-~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHA-----------------MPIRSLT-FSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCS-----------------SCCCEEE-ECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             eEEEEECCCCcEEEEEcccC-----------------CceeEEE-EcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            89999954 4  22322110                 0123343 46677777776667778888776543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=92.60  E-value=2.5  Score=45.62  Aligned_cols=120  Identities=8%  Similarity=0.056  Sum_probs=74.6

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ....+|+.|++|.|||+-.  +-|.++++.+   +++..+.....      .+    ..-+...+|+.|++|+|||+-.+
T Consensus       450 ~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~---~~~~~~~~~~~------~~----~~~~~i~~i~~d~~g~lWigt~~  514 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGTH--AGVFVIDLAS---KKVIHHYDTSN------SQ----LLENFVRSIAQDSEGRFWIGTFG  514 (781)
T ss_dssp             CCEEEEEECTTSEEEEEET--TEEEEEESSS---SSCCEEECTTT------SS----CSCSCEEEEEECTTCCEEEEESS
T ss_pred             CeEEEEEECCCCCEEEEEC--CceEEEeCCC---CeEEecccCcc------cc----cccceeEEEEEcCCCCEEEEEcC
Confidence            4567899999999999875  5799998763   33433322110      00    01245679999999999999764


Q ss_pred             CCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321          101 NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       101 N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      + -|.+++.++ ........        ++..    -....+| +.|.+|.|||+.. ++.|.++++....
T Consensus       515 ~-Gl~~~~~~~~~~~~~~~~--------~~l~----~~~i~~i-~~d~~g~lWi~T~-~Glv~~~d~~~~~  570 (781)
T 3v9f_A          515 G-GVGIYTPDMQLVRKFNQY--------EGFC----SNTINQI-YRSSKGQMWLATG-EGLVCFPSARNFD  570 (781)
T ss_dssp             S-CEEEECTTCCEEEEECTT--------TTCS----CSCEEEE-EECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred             C-CEEEEeCCCCeEEEccCC--------CCCC----CCeeEEE-EECCCCCEEEEEC-CCceEEECCCCCc
Confidence            3 488899765 22221110        1100    1123455 4689999999976 4444888876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=92.52  E-value=2.5  Score=40.79  Aligned_cols=116  Identities=12%  Similarity=0.152  Sum_probs=68.2

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe---
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD---   98 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD---   98 (445)
                      ....|+++++|.++++-..++.|..++...   ++.......     ++ .       -..+..+++.++|.++++-   
T Consensus       178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~-----~~-~-------~~~~~~~~~~~~~~~l~~g~~~  241 (402)
T 2aq5_A          178 TIYSVDWSRDGALICTSCRDKRVRVIEPRK---GTVVAEKDR-----PH-E-------GTRPVHAVFVSEGKILTTGFSR  241 (402)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTT---TEEEEEEEC-----SS-C-------SSSCCEEEECSTTEEEEEEECT
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEeCCC---Cceeeeecc-----CC-C-------CCcceEEEEcCCCcEEEEeccC
Confidence            457788888887767666777888887652   333222200     00 0       0135689999999877765   


Q ss_pred             CCCCEEEEEcCCC----cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc
Q 013321           99 TMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus        99 ~~N~rIrkfd~dG----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      ..++.|+.+|...    +.+.....                -.....+.+ ++++ .|+++....+.|+.+++....
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~-s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDT----------------SSGVLLPFF-DPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCC----------------CSSCEEEEE-ETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCCceEEEEcCccccCCceEEeccC----------------CCceeEEEE-cCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            5678899998543    12221100                012334444 4444 555677677888888876543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.38  E-value=3.3  Score=40.24  Aligned_cols=112  Identities=15%  Similarity=0.107  Sum_probs=70.3

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      -..|+++++|.++++-..++.|..++...   ++.......      +         -..-..|++.++|..+++=...+
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~---~~~~~~~~~------h---------~~~v~~~~~~p~~~~l~s~s~d~  187 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN---RKIVMILQG------H---------EQDIYSLDYFPSGDKLVSGSGDR  187 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECC------C---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEEEEEcc------C---------CCCEEEEEEcCCCCEEEEecCCC
Confidence            46899999999888888889999998763   333322211      1         11235899999998777766788


Q ss_pred             EEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321          103 AIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       103 rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      .|+..|.. +.  .++...                  .....+++...++.++++-...+.|+.+++....
T Consensus       188 ~v~iwd~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~  240 (393)
T 1erj_A          188 TVRIWDLRTGQCSLTLSIE------------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF  240 (393)
T ss_dssp             EEEEEETTTTEEEEEEECS------------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC
T ss_pred             cEEEEECCCCeeEEEEEcC------------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence            89999854 32  222110                  0122333323366666666667777777765543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=92.32  E-value=6.8  Score=36.06  Aligned_cols=114  Identities=10%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      ...++++++++++++-..++.|..++...   ++........               -..-..++++++|.++++=...+
T Consensus       110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A          110 VFCCNFNPQSNLIVSGSFDESVRIWDVKT---GKCLKTLPAH---------------SDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTT---CCEEEEECCC---------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCC---CEEEEEecCC---------------CCcEEEEEEcCCCCEEEEEeCCC
Confidence            46788888888888777788888888752   2222211110               11235788999998776666677


Q ss_pred             EEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          103 AIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       103 rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      .|+.+|.. +.  ..+....                 ..+...+...+++..+++-...+.|+.+++....+
T Consensus       172 ~i~~wd~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  226 (312)
T 4ery_A          172 LCRIWDTASGQCLKTLIDDD-----------------NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC  226 (312)
T ss_dssp             CEEEEETTTCCEEEEECCSS-----------------CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred             cEEEEECCCCceeeEEeccC-----------------CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence            89999854 32  2221100                 01122233566666666666667777777665443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=92.19  E-value=7  Score=35.96  Aligned_cols=127  Identities=17%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceE
Q 013321            7 GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL   86 (445)
Q Consensus         7 G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GI   86 (445)
                      .+.+...+.|...  .-..|+++|+|+++++-..++.|..++...   ++.......      +         -..-..|
T Consensus        12 ~~~~~~~~~gh~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~---~~~~~~~~~------h---------~~~v~~~   71 (312)
T 4ery_A           12 NYALKFTLAGHTK--AVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTISG------H---------KLGISDV   71 (312)
T ss_dssp             CCEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEEECC------C---------SSCEEEE
T ss_pred             CceeEEEEcccCC--cEEEEEECCCCCEEEEeeCCCeEEEEeCCC---cccchhhcc------C---------CCceEEE
Confidence            3444444444433  467999999999888887888898888752   333322211      1         1124589


Q ss_pred             EEcCCCCEEEEeCCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEE
Q 013321           87 AVDDRGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE  163 (445)
Q Consensus        87 avD~dG~LYVAD~~N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~  163 (445)
                      ++.++|+++++=..++.|+.+|.. +  +.++.+..                 ..-.++. ..+++.++++-..++.|+.
T Consensus        72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~s~~~d~~i~i  133 (312)
T 4ery_A           72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----------------NYVFCCN-FNPQSNLIVSGSFDESVRI  133 (312)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCEEE
T ss_pred             EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EcCCCCEEEEEeCCCcEEE
Confidence            999999977776677889999843 3  23332211                 0112232 3555666666556667777


Q ss_pred             EECCCCce
Q 013321          164 IQLHDDDC  171 (445)
Q Consensus       164 i~l~~~~~  171 (445)
                      +++....+
T Consensus       134 wd~~~~~~  141 (312)
T 4ery_A          134 WDVKTGKC  141 (312)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCEE
Confidence            77655433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.19  E-value=2.2  Score=41.39  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N  101 (445)
                      -..|+++++|+++++-..++.|..++...   ++......      |+         -..-..+++.+++. ++++=...
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~---~~~~~~~~------~h---------~~~V~~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQ---QVVLSSYR------AH---------AAQVTCVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEEC------CC---------SSCEEEEEECSSCTTEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCC---CcEEEEEc------Cc---------CCceEEEEecCCCCCceeeeccc
Confidence            46889999999888888888888888762   33322211      11         11235788888774 77765566


Q ss_pred             CEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321          102 MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       102 ~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      +.|+..|.. +  +..+.....               -....++++...++.++++-..++.|+.+++...
T Consensus       192 ~~v~iwd~~~~~~~~~~~~~~~---------------~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          192 NRILLWDTRCPKPASQIGCSAP---------------GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             SCEEEEETTSSSCEEECC-------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             cccccccccccceeeeeeccee---------------eccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence            788888843 3  222211000               0122344433345566666666677777776543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=91.68  E-value=12  Score=37.53  Aligned_cols=71  Identities=14%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ....+|++.|+|.++++-..++.|..++.+    ++.. .+.|.                -....++++.++|.++++=.
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~----~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~t~~  322 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNRN----GQLLQTLTGH----------------SSSVWGVAFSPDGQTIASAS  322 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETT----SCEEEEECCC----------------SSCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC----CcEEEEEecC----------------CCCeEEEEECCCCCEEEEEe
Confidence            346789999999988887778888888876    3332 22221                11345889999998777666


Q ss_pred             CCCEEEEEcCCC
Q 013321          100 MNMAIRKISDTG  111 (445)
Q Consensus       100 ~N~rIrkfd~dG  111 (445)
                      .++.|+..|.++
T Consensus       323 ~d~~i~~w~~~~  334 (577)
T 2ymu_A          323 DDKTVKLWNRNG  334 (577)
T ss_dssp             TTSCEEEEETTS
T ss_pred             CCCeEEEEeCCC
Confidence            677888888766

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.57  E-value=6  Score=42.38  Aligned_cols=152  Identities=13%  Similarity=0.087  Sum_probs=86.5

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ...+|+.|++|+|||+...++-|.++++..   +++..+...  +..          .-..+.+|+.|.+|+|||+-.  
T Consensus       473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~---~~~~~~~~~--~~~----------~~~~~~~i~~d~~g~lWigt~--  535 (758)
T 3ott_A          473 FINQIIPDNEGNVWVLLYNNKGIDKINPRT---REVTKLFAD--ELT----------GEKSPNYLLCDEDGLLWVGFH--  535 (758)
T ss_dssp             CEEEEEECTTSCEEEEETTCSSEEEEETTT---TEEEEECTT--TSC----------GGGCEEEEEECTTSCEEEEET--
T ss_pred             eeeeEEEcCCCCEEEEccCCCCcEEEeCCC---CceEEecCC--CcC----------CCcccceEEECCCCCEEEEec--
Confidence            467899999999999443346699999863   445444211  000          013567899999999999963  


Q ss_pred             CEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeecCCCCcc
Q 013321          102 MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH  180 (445)
Q Consensus       102 ~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~~~g~P  180 (445)
                      .-|.++++.. .... ...        ++..    -....+|+ . .+|.||+..  ++-|.+|++.........   .+
T Consensus       536 ~Gl~~~~~~~~~~~~-~~~--------~gl~----~~~i~~i~-~-~~g~lWi~t--~~Gl~~~~~~~~~~~~~~---~~  595 (758)
T 3ott_A          536 GGVMRINPKDESQQS-ISF--------GSFS----NNEILSMT-C-VKNSIWVST--TNGLWIIDRKTMDARQQN---MT  595 (758)
T ss_dssp             TEEEEECC--CCCCB-CCC--------CC-------CCEEEEE-E-ETTEEEEEE--SSCEEEEETTTCCEEEC-----C
T ss_pred             CceEEEecCCCceEE-ecc--------cCCC----ccceEEEE-E-CCCCEEEEC--CCCeEEEcCCCceeEEec---CC
Confidence            4699999654 2111 000        1111    12234554 3 489999987  456899998765444321   11


Q ss_pred             ceEEEEeccceEEEEEEeecCccceeeeccCCCccccCCC
Q 013321          181 LGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRG  220 (445)
Q Consensus       181 ~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~~~~~~~~~~  220 (445)
                      .       ..+.   .+++...-|.+.|...+.-..|+|.
T Consensus       596 ~-------~~~~---~~~~~~~~G~l~fG~~~Gl~~f~p~  625 (758)
T 3ott_A          596 N-------KRFT---SLLFDPKEDCVYLGGADGFGISHSN  625 (758)
T ss_dssp             C-------CCCS---EEEEETTTTEEEEECBSEEEEEEC-
T ss_pred             C-------Ccee---eeEEECCCCcEEEecCCceEEEChh
Confidence            1       1111   1233445677777777665555554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=91.43  E-value=8.6  Score=37.98  Aligned_cols=71  Identities=15%  Similarity=0.138  Sum_probs=41.4

Q ss_pred             CceEEEEcCCCc-EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           22 EPFSVAVSPSGE-LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs--~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      ....++++|||. |+++..  ++..|+.++..+   ++...+.+..                .....+++.++|. |+++
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~---~~~~~l~~~~----------------~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDGR----------------SNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEECCCCS----------------SCEEEEEECTTSSEEEEE
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCC---CCEEeCcCCC----------------CcccceEECCCCCEEEEE
Confidence            356788888877 443433  245677777653   3333322210                1245788999998 5544


Q ss_pred             eC--CCCEEEEEcCCC
Q 013321           98 DT--MNMAIRKISDTG  111 (445)
Q Consensus        98 D~--~N~rIrkfd~dG  111 (445)
                      -.  +..+|..+|.++
T Consensus       285 s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          285 SDQAGRPQVYKVNING  300 (415)
T ss_dssp             ECTTSSCEEEEEETTS
T ss_pred             ECCCCCcEEEEEECCC
Confidence            32  344888888654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=91.15  E-value=4.2  Score=38.37  Aligned_cols=81  Identities=19%  Similarity=0.108  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeC----CCCCCCc-------cEEEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKIST----SLSPYSR-------PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD   89 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~----dg~~~G~-------v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD   89 (445)
                      ...+++++|+|. ++++-..++.|..++.    ..   ++       ...+.....+. ....+     .-.....|++.
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~v~~~~~s  117 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQE---GKKYWKLTIIAELRHPFALS-ASSGK-----TTNQVTCLAWS  117 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC---------CEEEEEEEEEECCCCCC------------CBCEEEEEEC
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCC---cccccccccccccccccccc-ccccC-----CCCceEEEEEc
Confidence            457899999999 8888777888888877    42   33       11121111000 00000     01145689999


Q ss_pred             CCCCEEEEeCCCCEEEEEcCCC
Q 013321           90 DRGNIYIADTMNMAIRKISDTG  111 (445)
Q Consensus        90 ~dG~LYVAD~~N~rIrkfd~dG  111 (445)
                      ++|.++++=..++.|+.++.++
T Consensus       118 ~~~~~l~~~~~dg~i~i~~~~~  139 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWNKTG  139 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEETTS
T ss_pred             CCCCEEEEEeCCCeEEEEeCCC
Confidence            9998666655677899998766

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=91.07  E-value=5  Score=36.84  Aligned_cols=119  Identities=16%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ...+|+++|+|.++++-..++.|..++...   ++.. .+.+.                 .....+++.+++.++++-. 
T Consensus       217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~-  275 (340)
T 4aow_A          217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNE---GKHLYTLDGG-----------------DIINALCFSPNRYWLCAAT-  275 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTT---TEEEEEEECS-----------------SCEEEEEECSSSSEEEEEE-
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecc---CceeeeecCC-----------------ceEEeeecCCCCceeeccC-
Confidence            346788888888777777777888887652   2211 11111                 1235777888777665543 


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 013321          101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  167 (445)
Q Consensus       101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~  167 (445)
                      .+.|+.+|..+...+.....     ..........-..-.+++ ..++|.++++-...+.|+..++.
T Consensus       276 d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~l~-~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          276 GPSIKIWDLEGKIIVDELKQ-----EVISTSSKAEPPQCTSLA-WSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECC-----C-------CCCCCEEEEE-ECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEEECCCCeEEEeccc-----cceeeeccCCCCCEEEEE-ECCCCCEEEEEeCCCEEEEEeCC
Confidence            57788888655222211000     000000001111224444 57788777776667778877754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.00  E-value=2.7  Score=40.57  Aligned_cols=114  Identities=11%  Similarity=0.008  Sum_probs=66.4

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N  101 (445)
                      ..+|+++|+|.++++-..++.|..++...   ++.......      +         -.....|++.+++. ++++-..+
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~---~~~~~~~~~------h---------~~~v~~v~~s~~~~~~~~s~~~d  203 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---KAVLKSYNA------H---------SSEVNCVAACPGKDTIFLSCGED  203 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTT---TEEEEEECC------C---------SSCEEEEEECTTCSSCEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCC---CcEEEEEcC------C---------CCCEEEEEEccCCCceeeeeccC
Confidence            47899999999888887888899888762   333222211      1         12345788888764 66666667


Q ss_pred             CEEEEEcCCC-c--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321          102 MAIRKISDTG-V--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       102 ~rIrkfd~dG-v--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      +.|+.+|... .  ..+...               ..-..+..+++.+.++.++++-..++.|+.+++...
T Consensus       204 g~v~~wd~~~~~~~~~~~~~---------------~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~  259 (357)
T 4g56_B          204 GRILLWDTRKPKPATRIDFC---------------ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP  259 (357)
T ss_dssp             SCEEECCTTSSSCBCBCCCT---------------TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred             CceEEEECCCCceeeeeeec---------------cccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence            7888888432 1  111100               001123444443334556665555677777776543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=90.99  E-value=3.3  Score=40.66  Aligned_cols=116  Identities=17%  Similarity=0.216  Sum_probs=71.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ....|+++|++.++++-..++.|..++...   ++. ..+.|.                -..-.+|+++++|.++++=..
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~---~~~~~~l~~h----------------~~~V~~v~~~~~~~~l~sgs~  170 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYET---GDFERTLKGH----------------TDSVQDISFDHSGKLLASCSA  170 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTT---CCCCEEECCC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEEecc----------------CCcEEEEEEcCCCCEEEEEeC
Confidence            356899999999999988899999998763   332 222211                112458999999998777667


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      .+.|+.+|..+...+..-     .+..         ..-.++. ..+++..+++-...+.|+.+++....+
T Consensus       171 D~~i~iwd~~~~~~~~~~-----~~h~---------~~V~~v~-~~p~~~~l~s~s~D~~i~~wd~~~~~~  226 (410)
T 1vyh_C          171 DMTIKLWDFQGFECIRTM-----HGHD---------HNVSSVS-IMPNGDHIVSASRDKTIKMWEVQTGYC  226 (410)
T ss_dssp             TSCCCEEETTSSCEEECC-----CCCS---------SCEEEEE-ECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCeEEEEeCCCCceeEEE-----cCCC---------CCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            788888886542221110     0100         0122333 455666666666667777777665444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.88  E-value=11  Score=35.61  Aligned_cols=116  Identities=10%  Similarity=0.057  Sum_probs=73.6

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....+++.|+|.++++-..++.|..++...   +........      +         -....+|++.++|+++++=...
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~---~~~~~~~~~------h---------~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTG------H---------ESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---CSEEEEECC------C---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCC---CeeEEEEcC------C---------cCCEEEEEEcCCCCEEEEEcCC
Confidence            457899999999888888888999888752   332221111      1         1134689999999988777778


Q ss_pred             CEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321          102 MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       102 ~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      +.|+.+|... ..........             .......+. ..++|.++++-..++.|+.++....
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~-~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDN-------------IICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTT-------------CCSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CcEEEEECCCCcEEEEEccCC-------------cccceEEEE-ECCCCCEEEEECCCCeEEEEEcccC
Confidence            8899999543 2221111000             001123343 5777888877777888888886543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=90.85  E-value=10  Score=35.69  Aligned_cols=132  Identities=16%  Similarity=0.120  Sum_probs=72.0

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .....++++++| ++++-..++.|..++...   ++........   .++..      .-.....|+++++|.++++-..
T Consensus       187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~---~~h~~------~~~~i~~i~~~~~~~~l~~~~~  253 (397)
T 1sq9_A          187 QFATSVDISERG-LIATGFNNGTVQISELST---LRPLYNFESQ---HSMIN------NSNSIRSVKFSPQGSLLAIAHD  253 (397)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTT---TEEEEEEECC---C---C------CCCCEEEEEECSSTTEEEEEEE
T ss_pred             CCceEEEECCCc-eEEEEeCCCcEEEEECCC---CceeEEEecc---ccccc------cCCccceEEECCCCCEEEEEec
Confidence            456899999999 888888889999999763   3332221110   00000      0113468999999987766555


Q ss_pred             C---CEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321          101 N---MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus       101 N---~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      +   +.|+.+|.. +  +..+.+....   .. ......+.-....++. ..+++.++++-..++.|+.+++....
T Consensus       254 d~~~g~i~i~d~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          254 SNSFGCITLYETEFGERIGSLSVPTHS---SQ-ASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC------------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCCCceEEEEECCCCcccceeccCccc---cc-ccccccccCCcEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            5   789999953 4  2333220000   00 0000000111223443 45666666666667778888776543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=90.68  E-value=6.6  Score=37.80  Aligned_cols=73  Identities=11%  Similarity=0.089  Sum_probs=47.5

Q ss_pred             CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCC-----CccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC-CE
Q 013321           22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPY-----SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NI   94 (445)
Q Consensus        22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~-----G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~L   94 (445)
                      ...+|++++ +++++++-..++.|..++......     ..+..+.+.                -.....|++.++| ++
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~p~~~~~  146 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH----------------TKRVGIVAWHPTAQNV  146 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC----------------SSCEEEEEECSSBTTE
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC----------------CCeEEEEEECcCCCCE
Confidence            357899999 888888888888888888763210     012222211                1234688999987 56


Q ss_pred             EEEeCCCCEEEEEcCC
Q 013321           95 YIADTMNMAIRKISDT  110 (445)
Q Consensus        95 YVAD~~N~rIrkfd~d  110 (445)
                      +++=...+.|+.+|..
T Consensus       147 l~s~~~dg~i~iwd~~  162 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVG  162 (402)
T ss_dssp             EEEEETTSCEEEEETT
T ss_pred             EEEEcCCCEEEEEECC
Confidence            6655556778888844

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=90.63  E-value=5.7  Score=36.62  Aligned_cols=116  Identities=10%  Similarity=0.071  Sum_probs=68.4

Q ss_pred             CCceEEEEcCC---CcEEEEeCCCCeEEEEeCCCCCCCcc--EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEE
Q 013321           21 MEPFSVAVSPS---GELLVLDSENSNIYKISTSLSPYSRP--KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY   95 (445)
Q Consensus        21 ~~P~gIAVdpd---G~LYVaDs~n~rI~kid~dg~~~G~v--~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LY   95 (445)
                      ..-..|+++++   |+++++-..++.|..++....  +..  ..+.+.                -.....|++.++|.++
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--GQTIPKAQQMH----------------TGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--SCEEEEEEEEC----------------SSCEEEEEECTTSSEE
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--CceeEEEeccc----------------cCCEEEEEECcCCCEE
Confidence            34589999998   688888778888888887531  222  222221                1134589999999866


Q ss_pred             EEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEE-CCCCeEEEEECCCCeEEEEECCCC
Q 013321           96 IADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV-GSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus        96 VAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~v-d~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      ++=..++.|+.+|......+...      +.         -....++.+. .+++.++++-..++.|+.+++...
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~~~~------~~---------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAIQIA------QH---------DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEE------EC---------SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             EEEcCCCcEEEEEcCCCCceeec------cc---------cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence            65556788999986542221110      00         0011233221 566666666666677777776543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=90.39  E-value=4.8  Score=39.48  Aligned_cols=113  Identities=17%  Similarity=0.169  Sum_probs=68.3

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      ..+|+++++|.++++-+.++.|..++..+   ++.....      .++         -..-..|++.++|+++++=...+
T Consensus       153 V~~v~~~~~~~~l~sgs~D~~i~iwd~~~---~~~~~~~------~~h---------~~~V~~v~~~p~~~~l~s~s~D~  214 (410)
T 1vyh_C          153 VQDISFDHSGKLLASCSADMTIKLWDFQG---FECIRTM------HGH---------DHNVSSVSIMPNGDHIVSASRDK  214 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCCEEETTS---SCEEECC------CCC---------SSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEE------cCC---------CCCEEEEEEeCCCCEEEEEeCCC
Confidence            46777777777777777777777777652   1211110      111         11245889999999777766788


Q ss_pred             EEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          103 AIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       103 rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      .|+.+|.. |  +.++.+..                 ..-..+ ...+++.++++-...+.|+.+++....+
T Consensus       215 ~i~~wd~~~~~~~~~~~~h~-----------------~~v~~~-~~~~~g~~l~s~s~D~~v~vwd~~~~~~  268 (410)
T 1vyh_C          215 TIKMWEVQTGYCVKTFTGHR-----------------EWVRMV-RPNQDGTLIASCSNDQTVRVWVVATKEC  268 (410)
T ss_dssp             EEEEEETTTCCEEEEEECCS-----------------SCEEEE-EECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             eEEEEECCCCcEEEEEeCCC-----------------ccEEEE-EECCCCCEEEEEcCCCeEEEEECCCCce
Confidence            89999843 4  33332211                 011223 3567777777777778888888765444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=90.38  E-value=12  Score=35.35  Aligned_cols=113  Identities=10%  Similarity=0.013  Sum_probs=71.2

Q ss_pred             CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ...+|++.+ +++++++-..++.|..++..+   ..+..+.+.. +.            -.....|++.++|.++++=..
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~-~~------------~~~v~~~~~~~~~~~l~~~~~  183 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTD-SW------------DYWYCCVDVSVSRQMLATGDS  183 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEEEEEECCC-CS------------SCCEEEEEEETTTTEEEEEET
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---CceEEEeccC-CC------------CCCeEEEEECCCCCEEEEECC
Confidence            457889988 667777777788888888763   2333333321 00            123568999999997777667


Q ss_pred             CCEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCC
Q 013321          101 NMAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       101 N~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~-LyVaD~gn~rIr~i~l~~  168 (445)
                      ++.|+.+|..+.  .++.+..                 ....++. ..+++. ++++-...+.|+.+++..
T Consensus       184 d~~i~i~d~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          184 TGRLLLLGLDGHEIFKEKLHK-----------------AKVTHAE-FNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             TSEEEEEETTSCEEEEEECSS-----------------SCEEEEE-ECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEECCCCEEEEeccCC-----------------CcEEEEE-ECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            889999997662  3332110                 1223444 455565 666666677788887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.32  E-value=5.5  Score=37.71  Aligned_cols=73  Identities=7%  Similarity=0.111  Sum_probs=49.5

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ...+|+++|+|+++++-..++.|..++...   +.........    +         .......|++.++|.++++=..+
T Consensus       228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~~----~---------~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          228 DINAICFFPNGNAFATGSDDATCRLFDLRA---DQELMTYSHD----N---------IICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCT----T---------CCSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEcCCCcEEEEECCC---CcEEEEEccC----C---------cccceEEEEECCCCCEEEEECCC
Confidence            457888888888888887888888888652   2222221110    0         11234688999999988877778


Q ss_pred             CEEEEEcCC
Q 013321          102 MAIRKISDT  110 (445)
Q Consensus       102 ~rIrkfd~d  110 (445)
                      +.|+.+|..
T Consensus       292 ~~i~vwd~~  300 (340)
T 1got_B          292 FNCNVWDAL  300 (340)
T ss_dssp             SEEEEEETT
T ss_pred             CeEEEEEcc
Confidence            899999853

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=90.24  E-value=5  Score=43.29  Aligned_cols=122  Identities=9%  Similarity=0.049  Sum_probs=74.6

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ....+|+.|++|+ |||+-. ++-|.+++..+   +++..+.-..       .+ +   .-+....|+.|++|+|||+-.
T Consensus       406 ~~v~~i~~d~~g~~lWigt~-~~Gl~~~d~~~---~~~~~~~~~~-------~~-l---~~~~v~~i~~d~~g~lwigt~  470 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTH-AGGLSILHRNS---GQVENFNQRN-------SQ-L---VNENVYAILPDGEGNLWLGTL  470 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TTEEEEEETTT---CCEEEECTTT-------SC-C---SCSCEEEEEECSSSCEEEEES
T ss_pred             ccEEEEEEcCCCCEEEEEeC-cCceeEEeCCC---CcEEEeecCC-------CC-c---CCCeeEEEEECCCCCEEEEec
Confidence            3457899999999 999854 35689998763   4444443210       00 0   113456899999999999976


Q ss_pred             CCCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          100 MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       100 ~N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                        ..|.+++... ..+..... .      + +. ...-....+| +.|.+|.|||+..  +.|.+++.....+
T Consensus       471 --~Gl~~~~~~~~~~~~~~~~-~------~-~~-~~~~~~i~~i-~~d~~g~lWigt~--~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          471 --SALVRFNPEQRSFTTIEKE-K------D-GT-PVVSKQITTL-FRDSHKRLWIGGE--EGLSVFKQEGLDI  529 (795)
T ss_dssp             --SCEEEEETTTTEEEECCBC-T------T-CC-BCCCCCEEEE-EECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred             --CceeEEeCCCCeEEEcccc-c------c-cc-ccCCceEEEE-EECCCCCEEEEeC--CceEEEeCCCCeE
Confidence              4599999654 33321100 0      0 00 0001223455 4689999999986  4688888765444

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=90.24  E-value=8  Score=35.91  Aligned_cols=110  Identities=8%  Similarity=0.066  Sum_probs=70.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .-.+|+++|+|.++++-..++.|..++...   +.. ..+.+..                ..-..+++.++|+++++=..
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~---~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~s~s~   75 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYET---QVEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSD   75 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTT---TEEEEEEECCS----------------SCEEEEEEEGGGTEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCC---CceeEEeeccC----------------CcEEEEEEeCCCCEEEEECC
Confidence            468999999999888888889999998763   222 2222210                01247788888887777667


Q ss_pred             CCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          101 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       101 N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      .+.|+.+|.. |  +.++.+..                 ..-.+|. ..+++.++++-...+.|+..++..
T Consensus        76 d~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~l~sgs~D~~v~lWd~~~  128 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDFEAHP-----------------DYIRSIA-VHPTKPYVLSGSDDLTVKLWNWEN  128 (304)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEEGGG
T ss_pred             CCEEEEEECCCCcEEEEEeCCC-----------------CcEEEEE-EcCCCCEEEEECCCCeEEEEECCC
Confidence            8889999853 4  23332210                 0123343 466666666666677777777654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=90.19  E-value=2.5  Score=39.50  Aligned_cols=115  Identities=8%  Similarity=-0.035  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      .-..++++++|+++++-..++.|..++........+..+.+.                -....+|++.++|.++++=..+
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~~~~~d   73 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH----------------NGQVTGVDWAPDSNRIVTCGTD   73 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC----------------SSCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC----------------CCcccEEEEeCCCCEEEEEcCC
Confidence            357899999999888887889999998763100022222221                1134689999999866665566


Q ss_pred             CEEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          102 MAIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       102 ~rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      +.|+.+|.. +.  ........               -....++. ..+++.++++-..++.|+.+++..
T Consensus        74 g~i~vwd~~~~~~~~~~~~~~~---------------~~~v~~~~-~~~~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           74 RNAYVWTLKGRTWKPTLVILRI---------------NRAARCVR-WAPNEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             SCEEEEEEETTEEEEEEECCCC---------------SSCEEEEE-ECTTSSEEEEEETTSSEEEEEEET
T ss_pred             CeEEEEECCCCeeeeeEEeecC---------------CCceeEEE-ECCCCCEEEEEeCCCEEEEEEecC
Confidence            778888743 32  12211000               01223443 455665555555566777666544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=90.08  E-value=9.6  Score=35.05  Aligned_cols=110  Identities=11%  Similarity=0.041  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ...+++++++|.++++-..++.|..++...   ++.......                -.....++++++|.++++-...
T Consensus       220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          220 SISDMQFSPDLTYFITSSRDTNSFLVDVST---LQVLKKYET----------------DCPLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---CCEEEEEEC----------------SSCEEEEEECSSSSEEEEEECC
T ss_pred             ceeEEEECCCCCEEEEecCCceEEEEECCC---CceeeeecC----------------CCCceeEEecCCCceEEEeecC
Confidence            456788888777767666677787777652   222222111                1134578888888855443333


Q ss_pred             C--------------EEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 013321          102 M--------------AIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI  164 (445)
Q Consensus       102 ~--------------rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i  164 (445)
                      .              .|+.+|...   +.++.+.                 -....++. ..+++.++++-...+.|+.+
T Consensus       281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------~~~v~~~~-~s~~~~~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          281 EAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-----------------FGPLNTVA-ISPQGTSYASGGEDGFIRLH  342 (369)
T ss_dssp             C-------------CEEEEEETTTCCEEEEEECC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEE
T ss_pred             CCceEEEEecCCCcceeEEEecCCCcchhheecc-----------------cCcEEEEE-ECCCCCEEEEEcCCCeEEEE
Confidence            3              566666432   1222110                 11233444 56778777777777888888


Q ss_pred             ECCC
Q 013321          165 QLHD  168 (445)
Q Consensus       165 ~l~~  168 (445)
                      ++..
T Consensus       343 ~~~~  346 (369)
T 3zwl_B          343 HFEK  346 (369)
T ss_dssp             EECH
T ss_pred             ECcc
Confidence            8654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=89.99  E-value=4.8  Score=38.01  Aligned_cols=109  Identities=9%  Similarity=0.009  Sum_probs=67.6

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ....++++++|.++++-..++.|..++...   ++. ..+.+.                -.....|++.++| ++++-..
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~----------------~~~i~~~~~~~~~-~l~~~~~  308 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGN---GNSQNCFYGH----------------SQSIVSASWVGDD-KVISCSM  308 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSS---BSCSEEECCC----------------SSCEEEEEEETTT-EEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCC---CccceEecCC----------------CccEEEEEECCCC-EEEEEeC
Confidence            356788888887777777777888887652   222 222111                1134689999988 6666666


Q ss_pred             CCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          101 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       101 N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      .+.|+.+|.. +  +.++.+..                 ....++. ..+++.++++-..++.|+.+++..
T Consensus       309 d~~i~i~d~~~~~~~~~~~~~~-----------------~~i~~~~-~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          309 DGSVRLWSLKQNTLLALSIVDG-----------------VPIFAGR-ISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             TSEEEEEETTTTEEEEEEECTT-----------------CCEEEEE-ECTTSSEEEEEETTSCEEEEECHH
T ss_pred             CCcEEEEECCCCcEeEecccCC-----------------ccEEEEE-EcCCCCEEEEEECCCeEEEEECCC
Confidence            8899999954 3  22221100                 1223443 567777777767778888888754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=89.69  E-value=8.3  Score=36.39  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             CceEEEEcCCCcEEEEeCCC---CeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEE
Q 013321           22 EPFSVAVSPSGELLVLDSEN---SNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA   97 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n---~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA   97 (445)
                      ....|+++++|.++++-..+   +.|..++...   ++. ..+.+......-. -+  ..+.-.....|++.++|.++++
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~~-~~--~~~~~~~v~~~~~~~~~~~l~~  308 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQAS-LG--EFAHSSWVMSLSFNDSGETLCS  308 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEEEEECBC---------C--CBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCC---CcccceeccCccccccc-cc--ccccCCcEEEEEECCCCCEEEE
Confidence            46899999999987777666   8899998753   333 2222210000000 00  0001123468999999997777


Q ss_pred             eCCCCEEEEEcCC
Q 013321           98 DTMNMAIRKISDT  110 (445)
Q Consensus        98 D~~N~rIrkfd~d  110 (445)
                      -..++.|+.+|..
T Consensus       309 ~~~dg~i~iwd~~  321 (397)
T 1sq9_A          309 AGWDGKLRFWDVK  321 (397)
T ss_dssp             EETTSEEEEEETT
T ss_pred             EeCCCeEEEEEcC
Confidence            6678899999954

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=89.48  E-value=19  Score=37.50  Aligned_cols=119  Identities=9%  Similarity=0.071  Sum_probs=63.1

Q ss_pred             CCceEEEEcCCCc-EEEEeCCC----CeEEEEeCCCCCCC-ccEEEecCCCCcccCCCCCccCccCCCcceEEEcC--CC
Q 013321           21 MEPFSVAVSPSGE-LLVLDSEN----SNIYKISTSLSPYS-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RG   92 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n----~rI~kid~dg~~~G-~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG   92 (445)
                      ..+..++++|||. |+++....    ..|+.++..+   | ....+....  ...         ..+...++++.+  +|
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~---g~~~~~~~~~~--~~~---------~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET---GRFVRTLFVET--DKH---------YVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT---CCEEEEEEEEE--CSS---------CCCCCSCCEECTTCSS
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC---CceeeEEEEcc--CCC---------eECccCCceeecCCCC
Confidence            3467899999998 55543221    3788888763   4 344333211  000         111235778888  88


Q ss_pred             CE-EEEeCC-CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCC----eEEE
Q 013321           93 NI-YIADTM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQ----AIRE  163 (445)
Q Consensus        93 ~L-YVAD~~-N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~----rIr~  163 (445)
                      .+ |+++.. ..+|..++.+|  +..+..+..                 .-.+++..+++| .|+++...++    +|+.
T Consensus       324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-----------------~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW-----------------EVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCEEEECCCSSS-----------------CEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             EEEEEEccCCccEEEEEECCCCEEEecCCCCe-----------------EEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence            74 444432 46788888555  233321110                 011212345555 5666655543    7888


Q ss_pred             EECCCCc
Q 013321          164 IQLHDDD  170 (445)
Q Consensus       164 i~l~~~~  170 (445)
                      +++.+..
T Consensus       387 ~d~~~~~  393 (706)
T 2z3z_A          387 IDIKGGK  393 (706)
T ss_dssp             EETTCCC
T ss_pred             EEcCCCC
Confidence            8776543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=89.48  E-value=5.8  Score=39.00  Aligned_cols=81  Identities=10%  Similarity=0.076  Sum_probs=48.1

Q ss_pred             EEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321           10 VETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD   89 (445)
Q Consensus        10 v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD   89 (445)
                      ...+.........-..++++++|.++++-..++.|..++..+..   +..+       .++         -..-.+|++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~---~~~~-------~~h---------~~~v~~v~~~  259 (435)
T 4e54_B          199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE---LWNL-------RMH---------KKKVTHVALN  259 (435)
T ss_dssp             EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB---CCCS-------BCC---------SSCEEEEEEC
T ss_pred             eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce---eEEE-------ecc---------cceEEeeeec
Confidence            33333333333445678888888888888888888888876311   1111       111         1123578898


Q ss_pred             CCCC-EEEEeCCCCEEEEEcC
Q 013321           90 DRGN-IYIADTMNMAIRKISD  109 (445)
Q Consensus        90 ~dG~-LYVAD~~N~rIrkfd~  109 (445)
                      +++. ++++=...+.|+.+|.
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~  280 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDL  280 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEET
T ss_pred             CCCceEEEEecCcceeeEEec
Confidence            8776 5555445666777773

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=88.85  E-value=5.8  Score=38.01  Aligned_cols=108  Identities=14%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      ..+|+++|+|.++++-..++.|+.++...   ++...+....             ........+++.++|.++++=...+
T Consensus       243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~---~~~~~~~~~~-------------~~~~~~~~~~~s~~g~~l~~g~~d~  306 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDATCRLYDLRA---DREVAIYSKE-------------SIIFGASSVDFSLSGRLLFAGYNDY  306 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCT-------------TCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEECCC---CcEEEEEcCC-------------CcccceeEEEEeCCCCEEEEEECCC
Confidence            45666666666666665666666666542   1111111110             0112345788999999777766678


Q ss_pred             EEEEEcC-CC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 013321          103 AIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI  164 (445)
Q Consensus       103 rIrkfd~-dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i  164 (445)
                      .|+.+|. .+  +.++.+..                 ....++. ..++|.++++-...+.|+..
T Consensus       307 ~i~vwd~~~~~~~~~l~~h~-----------------~~v~~l~-~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          307 TINVWDVLKGSRVSILFGHE-----------------NRVSTLR-VSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             CEEEEETTTCSEEEEECCCS-----------------SCEEEEE-ECTTSSCEEEEETTSEEEEE
T ss_pred             cEEEEECCCCceEEEEECCC-----------------CcEEEEE-ECCCCCEEEEEcCCCCEEec
Confidence            8999984 44  23332110                 1223444 46777776666666777654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=88.71  E-value=5.8  Score=39.02  Aligned_cols=113  Identities=12%  Similarity=0.088  Sum_probs=72.1

Q ss_pred             CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~-v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      ...+|++++ ++.++++...++.|+.++........ +..+.+.                -..+..|++.++|. ++++=
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------~~~v~~i~~~p~~~~~l~tg  296 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH----------------TAEVNCLSFNPYSEFILATG  296 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC----------------SSCEEEEEECSSCTTEEEEE
T ss_pred             CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC----------------CCCeEEEEeCCCCCCEEEEE
Confidence            467899999 67899898889999999876321001 1222111                12467899999886 77766


Q ss_pred             CCCCEEEEEcCCC----cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321           99 TMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        99 ~~N~rIrkfd~dG----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~  168 (445)
                      ...+.|+.+|...    +.++.+..                 ....+|. ..+++ .++++-...++|+.+++..
T Consensus       297 ~~dg~v~vwd~~~~~~~~~~~~~h~-----------------~~v~~i~-~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          297 SADKTVALWDLRNLKLKLHSFESHK-----------------DEIFQVQ-WSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEECCS-----------------SCEEEEE-ECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             eCCCeEEEEeCCCCCCCeEEeecCC-----------------CCEEEEE-ECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            6678899998432    33432211                 1223444 35555 6777777788888888765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=88.53  E-value=17  Score=34.53  Aligned_cols=72  Identities=24%  Similarity=0.285  Sum_probs=48.5

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ....+|+++|+|.++++-..++.|..++....  ..+..+.+.                -....+|++.++|.++++=..
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~  201 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGH----------------RATVTDIAIIDRGRNVLSASL  201 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCCEEEECC----------------SSCEEEEEEETTTTEEEEEET
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCceEEcCC----------------CCcEEEEEEcCCCCEEEEEcC
Confidence            34678999999888888778888999987631  112222221                113458889988886666556


Q ss_pred             CCEEEEEcCC
Q 013321          101 NMAIRKISDT  110 (445)
Q Consensus       101 N~rIrkfd~d  110 (445)
                      .+.|+.+|..
T Consensus       202 d~~v~iwd~~  211 (420)
T 3vl1_A          202 DGTIRLWECG  211 (420)
T ss_dssp             TSCEEEEETT
T ss_pred             CCcEEEeECC
Confidence            6778888843

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=88.47  E-value=1.4  Score=47.37  Aligned_cols=61  Identities=13%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             CCCceEEEEcCCCcEEEEeC------------CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEE
Q 013321           20 GMEPFSVAVSPSGELLVLDS------------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA   87 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs------------~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa   87 (445)
                      +..|-.|+|++.|+|||+.-            .|+.++.+++.   .|++..++-.+.++              ..+|++
T Consensus       475 f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~---~g~~~rf~~~P~ga--------------E~TG~~  537 (592)
T 3zwu_A          475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA---TGEIRRFMVGPIGC--------------EVTGIS  537 (592)
T ss_dssp             CCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTT---TCCEEEEEECCTTC--------------EEEEEE
T ss_pred             ccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCC---CCeEEEEEeCCCCc--------------cCcCee
Confidence            46899999999999999753            34677777765   36777776655322              456999


Q ss_pred             EcCCCC-EEEE
Q 013321           88 VDDRGN-IYIA   97 (445)
Q Consensus        88 vD~dG~-LYVA   97 (445)
                      +++||. |||.
T Consensus       538 fspDg~tlfvn  548 (592)
T 3zwu_A          538 FSPDQKTLFVG  548 (592)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            999987 6664

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=88.46  E-value=7.8  Score=38.07  Aligned_cols=122  Identities=12%  Similarity=0.043  Sum_probs=70.9

Q ss_pred             CCceEEEEcCC-CcEEEEeCCCCeEEEEeCCCCC--------CCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCC
Q 013321           21 MEPFSVAVSPS-GELLVLDSENSNIYKISTSLSP--------YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR   91 (445)
Q Consensus        21 ~~P~gIAVdpd-G~LYVaDs~n~rI~kid~dg~~--------~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d   91 (445)
                      ..+..|++.++ +.++++-..++.|..++.....        ......+.+.                -....+|+++++
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~l~~~~~  192 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----------------QKEGYGLSWNPN  192 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----------------SSCCCCEEECTT
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----------------CCCeEEEEeCCC
Confidence            35789999996 6788888888889888865210        0111111111                123568999998


Q ss_pred             CC-EEEEeCCCCEEEEEcCCC----cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 013321           92 GN-IYIADTMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  166 (445)
Q Consensus        92 G~-LYVAD~~N~rIrkfd~dG----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l  166 (445)
                      +. ++++=...+.|+.++...    ...+.....           ....-....++.+...++.++++...++.|+.+++
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~  261 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNI-----------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT  261 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGGEEECSEE-----------ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCceecccee-----------ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            87 777666678888888543    111100000           00011123455543336677777777888888887


Q ss_pred             CCC
Q 013321          167 HDD  169 (445)
Q Consensus       167 ~~~  169 (445)
                      ...
T Consensus       262 ~~~  264 (430)
T 2xyi_A          262 RNN  264 (430)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=88.45  E-value=6.6  Score=36.87  Aligned_cols=116  Identities=14%  Similarity=0.097  Sum_probs=67.8

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....++++|+|.++++-..++.|..++...   ++.......                -.....+++.++|.++++-. .
T Consensus       198 ~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---~~~~~~~~~----------------~~~v~~~~~sp~~~~la~~~-~  257 (319)
T 3frx_A          198 NINTLTASPDGTLIASAGKDGEIMLWNLAA---KKAMYTLSA----------------QDEVFSLAFSPNRYWLAAAT-A  257 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTT---TEEEEEEEC----------------CSCEEEEEECSSSSEEEEEE-T
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEecC----------------CCcEEEEEEcCCCCEEEEEc-C
Confidence            457889999999888888888899888763   222221111                01245899999998555433 3


Q ss_pred             CEEEEEcCCCc---EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 013321          102 MAIRKISDTGV---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  167 (445)
Q Consensus       102 ~rIrkfd~dGv---~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~  167 (445)
                      ..|+.++.+..   ..+.....+.         ..+.-....+++ ..++|..+++-...+.|+..++.
T Consensus       258 ~~i~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~-~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          258 TGIKVFSLDPQYLVDDLRPEFAGY---------SKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             TEEEEEEETTEEEEEEECCCCTTC---------CGGGCCCEEEEE-ECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEeCcCeeeeccCcccccc---------ccCcCcceeEEE-ECCCCCEEEEeecCceEEEEEEe
Confidence            44777765442   2221111000         000111234554 57888888877778888887753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=88.20  E-value=4.7  Score=39.66  Aligned_cols=115  Identities=11%  Similarity=0.026  Sum_probs=68.1

Q ss_pred             CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .-.+|+++| +|+++++-+.++.|..++..+   +....+.... .            .-..-..++++++|.++++=..
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~l~~g~~  229 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKG---NILRVFASSD-T------------INIWFCSLDVSASSRMVVTGDN  229 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTS---CEEEEEECCS-S------------CSCCCCCEEEETTTTEEEEECS
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccC---CceeEEeccC-C------------CCccEEEEEECCCCCEEEEEeC
Confidence            346889987 678888888888888888763   2333333221 0            0112357889999998877667


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321          101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~  168 (445)
                      ++.|+.+|.++..+...      .+.         -..-.+|. ..+++ .++++-...+.|+.+++..
T Consensus       230 dg~i~~wd~~~~~~~~~------~~h---------~~~v~~v~-~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          230 VGNVILLNMDGKELWNL------RMH---------KKKVTHVA-LNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             SSBEEEEESSSCBCCCS------BCC---------SSCEEEEE-ECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             CCcEeeeccCcceeEEE------ecc---------cceEEeee-ecCCCceEEEEecCcceeeEEeccc
Confidence            78899998765211100      000         01123444 34444 4666555667777777654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=87.93  E-value=7.2  Score=38.41  Aligned_cols=117  Identities=13%  Similarity=0.156  Sum_probs=63.7

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCC---CCEEEE
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR---GNIYIA   97 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d---G~LYVA   97 (445)
                      ..+.+|+++|+|.++++-..++.|+.++.........  ..   ....+         ......+|++.++   |.++++
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~--~~---~~~~~---------h~~~v~~~~~sp~~~~~~~l~s  215 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF--TQ---EPILG---------HVSMLTDVHLIKDSDGHQFIIT  215 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC--CC---CCSEE---------CSSCEEEEEEEECTTSCEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc--cc---eeeec---------ccCceEEEEEcCCCCCCcEEEE
Confidence            4578999999988666666678898888652110000  00   00011         1224568999998   865554


Q ss_pred             eCCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321           98 DTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus        98 D~~N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      =...+.|+.+|.. +  +.++..+.                -....++++ . ++.++++-...+.|+.+++...
T Consensus       216 ~~~d~~i~vwd~~~~~~~~~~~~~h----------------~~~v~~~~~-s-d~~~l~s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          216 SDRDEHIKISHYPQCFIVDKWLFGH----------------KHFVSSICC-G-KDYLLLSAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             EETTSCEEEEEESCTTCEEEECCCC----------------SSCEEEEEE-C-STTEEEEEESSSEEEEEETTTC
T ss_pred             EcCCCcEEEEECCCCceeeeeecCC----------------CCceEEEEE-C-CCCEEEEEeCCCeEEEEECCCC
Confidence            4456778888843 3  22221111                012234433 3 5555555556667777766543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=87.45  E-value=16  Score=34.93  Aligned_cols=125  Identities=10%  Similarity=-0.033  Sum_probs=73.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCccE-EEe-cCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           22 EPFSVAVSPSGELLVLDSENSN-IYKISTSLSPYSRPK-LVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~r-I~kid~dg~~~G~v~-~va-G~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      ....|+++|+|.++++-+.++. |..++...   ++.. .+. |..               -..-..|+++++|.++++=
T Consensus       197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~---~~~~~~~~~g~h---------------~~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTED---GVLVREFRRGLD---------------RADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             CEEEEEECTTSSEEEEEETTCSEEEEEETTT---CCEEEEEECTTC---------------CSCEEEEEECTTSCEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEEcCCC---------------CCcEEEEEECCCCCEEEEE
Confidence            4579999999999998888887 88888763   3332 222 211               1134589999999988777


Q ss_pred             CCCCEEEEEcCCC-----cEEEecCcccCCCCCCCCCccCcc--c----CCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 013321           99 TMNMAIRKISDTG-----VTTIAGGKWSRGVGHVDGPSEDAK--F----SNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  167 (445)
Q Consensus        99 ~~N~rIrkfd~dG-----v~tiaGg~~G~g~G~~dgp~~~a~--f----~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~  167 (445)
                      ...+.|+.+|...     ...+.+-..   ..........+.  +    ..+..+++..++|..+++-..+++++.++..
T Consensus       259 s~d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          259 SDKWTLHVFEIFNDQDNKRHALKGWIN---MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             ETTCEEEEEESSCCSCCCSEETTTTEE---CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             ECCCEEEEEEccCCCCcccccccceee---ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            7778899888432     111111000   000000000000  1    1112444568888877777778888887753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=86.69  E-value=23  Score=34.00  Aligned_cols=29  Identities=21%  Similarity=0.090  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTS   50 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~d   50 (445)
                      ....|+++++|.++++-..++.|..++..
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            46789999999887777778888888865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=86.63  E-value=14  Score=34.97  Aligned_cols=120  Identities=8%  Similarity=-0.022  Sum_probs=68.8

Q ss_pred             CCceEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC-CEEEEe
Q 013321           21 MEPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpd-G~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYVAD   98 (445)
                      ....+|+++++ +.++++-..++.|..++...   ++............++         -.....|++.++| .++++-
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~  233 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGI---------KQQLSVVEWHPKNSTRVATA  233 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSSCC---------CCCEEEEEECSSCTTEEEEE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---CCcceEEecccccccc---------CCceEEEEECCCCCCEEEEE
Confidence            34678999998 68888888889999999763   3333322221101010         1245689999987 455554


Q ss_pred             CCCC---EEEEEcCCC----cEEEecCcccCCCCCCCCCccCcccCCCceEEEECC-CCeEEEEECCCCeEEEEECCCC
Q 013321           99 TMNM---AIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus        99 ~~N~---rIrkfd~dG----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~-dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      ..++   .|+.+|...    +.++..                ..-....++.+ .+ ++.++++-..++.|+.+++...
T Consensus       234 ~~d~~~~~i~~~d~~~~~~~~~~~~~----------------~~~~~v~~~~~-s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          234 TGSDNDPSILIWDLRNANTPLQTLNQ----------------GHQKGILSLDW-CHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             ECCSSSCCCCEEETTSTTSCSBCCCS----------------CCSSCEEEEEE-CSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             ECCCCCceEEEEeCCCCCCCcEEeec----------------CccCceeEEEe-CCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            4454   788888432    111110                00112334443 44 6666666666677777776553

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=86.59  E-value=24  Score=34.03  Aligned_cols=117  Identities=16%  Similarity=0.204  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~~  100 (445)
                      ....|++.++|..+++-..++.|..++...   ++.......                -.....+++.+ +|.++++-..
T Consensus       167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTLSI----------------EDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEECSTTCCEEEEEET
T ss_pred             CEEEEEEcCCCCEEEEecCCCcEEEEECCC---CeeEEEEEc----------------CCCcEEEEEECCCCCEEEEEcC
Confidence            356788888888777777788888887652   333222211                01245788887 7887777667


Q ss_pred             CCEEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          101 NMAIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       101 N~rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      .+.|+.+|.. +.  ..+..... .         ....-....++. ..++|.++++-...+.|+.+++..
T Consensus       228 d~~v~iwd~~~~~~~~~~~~~~~-~---------~~~h~~~v~~v~-~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          228 DRAVRVWDSETGFLVERLDSENE-S---------GTGHKDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             TSCEEEEETTTCCEEEEEC----------------CCCSSCEEEEE-ECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEECCCCcEEEeeccccc-C---------CCCCCCCEEEEE-ECCCCCEEEEEeCCCEEEEEECCC
Confidence            7889999854 32  22211000 0         000111234454 467777777777778888888754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=86.34  E-value=21  Score=33.26  Aligned_cols=87  Identities=15%  Similarity=0.128  Sum_probs=47.2

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ...+|+++|+|. ++++-..++.|..++..... ..+..+.... +......-......-....+|++.++|.++++=..
T Consensus       188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          188 EILAVSWSPRYDYILATASADSRVKLWDVRRAS-GCLITLDQHN-GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTCSS-CCSEECCTTT-TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC-cccccccccc-cccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            356788888776 67676677788888765211 1122221110 00000000000111234568999999986666556


Q ss_pred             CCEEEEEcCC
Q 013321          101 NMAIRKISDT  110 (445)
Q Consensus       101 N~rIrkfd~d  110 (445)
                      ++.|+.+|..
T Consensus       266 dg~i~vwd~~  275 (408)
T 4a11_B          266 DNRMRLWNSS  275 (408)
T ss_dssp             TSCEEEEETT
T ss_pred             CCeEEEEECC
Confidence            7789999854

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=86.22  E-value=21  Score=37.24  Aligned_cols=87  Identities=11%  Similarity=0.137  Sum_probs=47.1

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCC-----eEEEEeCCCCCCCccEEEecCCCCcc-c---CCCCCccC--ccC---CCcc
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENS-----NIYKISTSLSPYSRPKLVAGSPEGYY-G---HVDGRPRG--ARM---NHPK   84 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~-----rI~kid~dg~~~G~v~~vaG~~~G~~-G---~~dG~~~~--a~L---n~P~   84 (445)
                      +..+..++++|||. |+++....+     .|+.++..+   |+...+........ |   ...+....  .++   ....
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS---GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT---CCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC---CceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            35688999999998 444443244     899999874   44444432110000 0   00000000  000   1246


Q ss_pred             eEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 013321           85 GLAVDDRGN-IYIADTMNMAIRKISDTG  111 (445)
Q Consensus        85 GIavD~dG~-LYVAD~~N~rIrkfd~dG  111 (445)
                      .+++.+||. |+++..  ..|+.+|.++
T Consensus       113 ~~~~SpDg~~l~~~~~--~~i~~~d~~~  138 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG--GELYLYDLKQ  138 (741)
T ss_dssp             CCEECTTSSEEEEEET--TEEEEEESSS
T ss_pred             eeEECCCCCEEEEEeC--CcEEEEECCC
Confidence            889999998 555554  7788888543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=86.10  E-value=14  Score=33.98  Aligned_cols=70  Identities=10%  Similarity=0.013  Sum_probs=49.2

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEE--cCCCCEEEEeC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAV--DDRGNIYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav--D~dG~LYVAD~   99 (445)
                      ....|+++++|.++++-..++.|..++...   +....+.+.                -....+|++  +++|.++++=.
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSS---NQAIQIAQH----------------DAPVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEEEECSSCEEEEEEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCC---CCceeeccc----------------cCceEEEEEEeCCCCCEEEEcc
Confidence            467899999998878777888999998763   333333321                113457888  88888666666


Q ss_pred             CCCEEEEEcCC
Q 013321          100 MNMAIRKISDT  110 (445)
Q Consensus       100 ~N~rIrkfd~d  110 (445)
                      .++.|+.+|..
T Consensus       149 ~dg~i~vwd~~  159 (368)
T 3mmy_A          149 WDKTLKFWDTR  159 (368)
T ss_dssp             TTSEEEEECSS
T ss_pred             CCCcEEEEECC
Confidence            67889999843

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=85.90  E-value=25  Score=33.71  Aligned_cols=71  Identities=15%  Similarity=0.092  Sum_probs=47.3

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC-
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT-   99 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~-   99 (445)
                      ...+++++++|.++++-..++.|..++...   +.........               -.....|++.++|. |+++-. 
T Consensus       219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~---------------~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          219 EVCGLAWRSDGLQLASGGNDNVVQIWDARS---SIPKFTKTNH---------------NAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTC---SSEEEEECCC---------------SSCCCEEEECTTSTTEEEEECC
T ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEccCCC---CCccEEecCC---------------cceEEEEEECCCCCCEEEEecC
Confidence            467889999888888877788888888763   2322221110               12346899998664 666643 


Q ss_pred             -CCCEEEEEcCC
Q 013321          100 -MNMAIRKISDT  110 (445)
Q Consensus       100 -~N~rIrkfd~d  110 (445)
                       .++.|+.+|..
T Consensus       281 s~d~~i~i~d~~  292 (401)
T 4aez_A          281 TMDKQIHFWNAA  292 (401)
T ss_dssp             TTTCEEEEEETT
T ss_pred             CCCCEEEEEECC
Confidence             57889999954

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=85.76  E-value=17  Score=34.51  Aligned_cols=109  Identities=12%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             EEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEE
Q 013321           27 AVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRK  106 (445)
Q Consensus        27 AVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrk  106 (445)
                      ++.++|+++++-..++.|..++...   +.......      +         .-.....|++.++|.++++=..++.|+.
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~------~---------h~~~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNF---NLQREIDQ------A---------HVSEITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTS---CEEEEETT------S---------SSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCC---cceeeecc------c---------ccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence            4566777777766777788777652   22222211      1         1123468999999987666666788999


Q ss_pred             EcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          107 ISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       107 fd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      +|.. +  +.++.+..                 ....++. ..+++.++++-...+.|+.+++....+
T Consensus       166 wd~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          166 WSVKDGSNPRTLIGHR-----------------ATVTDIA-IIDRGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             EETTTCCCCEEEECCS-----------------SCEEEEE-EETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             EeCCCCcCceEEcCCC-----------------CcEEEEE-EcCCCCEEEEEcCCCcEEEeECCCCce
Confidence            9843 3  33332210                 1123444 345566555555667777777765443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=85.36  E-value=17  Score=32.70  Aligned_cols=71  Identities=10%  Similarity=0.031  Sum_probs=45.2

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc--c-EEEecCCCCcccCCCCCccCccCCCcceEEEcC--CCCEEE
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR--P-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYI   96 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~--v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYV   96 (445)
                      .-..|+++++|.++++-..++.|..++..... ..  . ..+.+.                -.....|++.+  +|.+++
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~----------------~~~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-SNWELSDSWRAH----------------DSSIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSS-CCEEEEEEEECC----------------SSCEEEEEECCGGGCSEEE
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-CcceecceeccC----------------CCcEEEEEEcCCCCCCEEE
Confidence            46899999999988888788889888875311 11  1 111111                11345788887  477666


Q ss_pred             EeCCCCEEEEEcC
Q 013321           97 ADTMNMAIRKISD  109 (445)
Q Consensus        97 AD~~N~rIrkfd~  109 (445)
                      +=...+.|+.+|.
T Consensus        76 s~~~dg~v~vwd~   88 (351)
T 3f3f_A           76 SASYDKTVKLWEE   88 (351)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EEcCCCeEEEEec
Confidence            5555667777773

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=85.33  E-value=16  Score=38.37  Aligned_cols=70  Identities=9%  Similarity=0.037  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ...+|+++|+|.++++-..++.|..++...   +.. ..+.+..                ....++++.++|.++++=..
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~---~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~   75 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYET---QVEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSD   75 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTT---TEEEEEEECCS----------------SCEEEEEEEGGGTEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCC---CceEEEEecCC----------------CcEEEEEEeCCCCEEEEEeC
Confidence            578999999999777777788999998652   333 2222211                12458899999885555445


Q ss_pred             CCEEEEEcCC
Q 013321          101 NMAIRKISDT  110 (445)
Q Consensus       101 N~rIrkfd~d  110 (445)
                      ++.|+.+|..
T Consensus        76 dg~i~vw~~~   85 (814)
T 3mkq_A           76 DFRIRVFNYN   85 (814)
T ss_dssp             TSEEEEEETT
T ss_pred             CCeEEEEECC
Confidence            7889988843

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=85.27  E-value=9.9  Score=38.83  Aligned_cols=115  Identities=7%  Similarity=-0.059  Sum_probs=64.6

Q ss_pred             eEEEEcCCCcEEEE---eCCC-CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           24 FSVAVSPSGELLVL---DSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        24 ~gIAVdpdG~LYVa---Ds~n-~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      ..++++|||..+++   |..+ ..|++++..+   |+...+.+..                .....+++.|||. |+.++
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~---g~~~~l~~~~----------------~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS---GGLRVFDSGE----------------GSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTT---CCCEEECCSS----------------CEEEEEEECTTSCEEEEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC---CCceEeecCC----------------CccccceECCCCCEEEEcc
Confidence            68899999986552   2222 5688888764   5555554321                1225889999998 55455


Q ss_pred             CCC-CEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 013321           99 TMN-MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  166 (445)
Q Consensus        99 ~~N-~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l  166 (445)
                      ... .+|+++|.++ ...+..+..    +....+.   . ..+... +.+++|.|+++-..+++++.+..
T Consensus       214 ~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~---~-~~~~~~-~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSVEDLELPS----KDFSSYR---P-TAITWL-GYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSSCEEEEEECTTTCCEEECCCSC----SHHHHHC---C-SEEEEE-EECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCeeEEEEEcCCCCcEEEccCCC----cChhhhh---h-ccccce-eEcCCCcEEEEEEcCCcEEEEEE
Confidence            432 3899999655 222221110    0000000   0 011111 24677788877776777877776

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=85.25  E-value=6.2  Score=36.33  Aligned_cols=112  Identities=11%  Similarity=-0.023  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc----cEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR----PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI   96 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~----v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV   96 (445)
                      ...+++++++|.++++-..++.|..++...   +.    +..+.+.                -.....|++.++|. +++
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~---~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~   73 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDI---QAKNVDLLQSLRY----------------KHPLLCCNFIDNTDLQIY   73 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEET---TTTEEEEEEEEEC----------------SSCEEEEEEEESSSEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCC---CCccccceeeeec----------------CCceEEEEECCCCCcEEE
Confidence            467999999999777777788888887653   22    2222221                12346899999998 555


Q ss_pred             EeCCCCEEEEEcC-CC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321           97 ADTMNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        97 AD~~N~rIrkfd~-dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      +=..++.|+.+|. .. ......+.     ..         -....++.+. + +.++++-...+.|+.+++..
T Consensus        74 ~~~~dg~i~~wd~~~~~~~~~~~~~-----~~---------~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           74 VGTVQGEILKVDLIGSPSFQALTNN-----EA---------NLGICRICKY-G-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             EEETTSCEEEECSSSSSSEEECBSC-----CC---------CSCEEEEEEE-T-TTEEEEEETTSEEEEECHHH
T ss_pred             EEcCCCeEEEEEeccCCceEecccc-----CC---------CCceEEEEeC-C-CCEEEEEcCCCeEEEEcccc
Confidence            5445778999986 54 22111110     00         0122344443 3 55666666678888887653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=85.08  E-value=16  Score=33.87  Aligned_cols=68  Identities=6%  Similarity=0.029  Sum_probs=46.5

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      -..+++.++|+++++-..++.|..++...   ++.. .+.+.                -..-..|++.+++.++++=...
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~---~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~sgs~D  118 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNT---GEKVVDFEAH----------------PDYIRSIAVHPTKPYVLSGSDD  118 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTT---CCEEEEEECC----------------SSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCC---CcEEEEEeCC----------------CCcEEEEEEcCCCCEEEEECCC
Confidence            35778888888888877788888888763   3322 22221                1123588999999877776667


Q ss_pred             CEEEEEcC
Q 013321          102 MAIRKISD  109 (445)
Q Consensus       102 ~rIrkfd~  109 (445)
                      +.|+..|.
T Consensus       119 ~~v~lWd~  126 (304)
T 2ynn_A          119 LTVKLWNW  126 (304)
T ss_dssp             SCEEEEEG
T ss_pred             CeEEEEEC
Confidence            88888884

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=84.97  E-value=7.9  Score=36.76  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=64.1

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE--EEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK--LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~--~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      .-..|+++|+|.++++-..++.|..++..+   +...  ....     .|+         -..-..|++.++|.++++=.
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~---~~~~~~~~~~-----~~h---------~~~v~~~~~sp~g~~l~s~s   80 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEG---DSWICKSVLS-----EGH---------QRTVRKVAWSPCGNYLASAS   80 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEET---TEEEEEEEEC-----SSC---------SSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCC---Ccceeeeeec-----ccc---------CCcEEEEEECCCCCEEEEEE
Confidence            356899999999988888888888887652   2211  1111     111         11235899999998666555


Q ss_pred             CCCEEEEEcCC-C----cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          100 MNMAIRKISDT-G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       100 ~N~rIrkfd~d-G----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      ..+.|+..+.+ +    +.++.+..                 ..-.++. ..+++.++++-...+.|+..++..
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~h~-----------------~~v~~v~-~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTTLEGHE-----------------NEVKSVA-WAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEEECT
T ss_pred             CCCcEEEEEccCCCeEEEEEccCCC-----------------CCceEEE-EeCCCCEEEEEECCCeEEEEECCC
Confidence            55666666532 2    12221110                 0122333 355666666655666677666543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=84.89  E-value=19  Score=33.03  Aligned_cols=115  Identities=10%  Similarity=0.031  Sum_probs=70.6

Q ss_pred             CceEEEEcCC----CcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEE
Q 013321           22 EPFSVAVSPS----GELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIY   95 (445)
Q Consensus        22 ~P~gIAVdpd----G~LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LY   95 (445)
                      ....+++.++    |.++++-..++.|..++...   ++.. .+.+.                -....+|++.+ ++.++
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~----------------~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT---MQCIKHYVGH----------------GNAINELKFHPRDPNLL  131 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT---CCEEEEEESC----------------CSCEEEEEECSSCTTEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh---ceEeeeecCC----------------CCcEEEEEECCCCCCEE
Confidence            4678889887    66778777888999998763   3332 22221                11346889998 88877


Q ss_pred             EEeCCCCEEEEEcCC-CcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321           96 IADTMNMAIRKISDT-GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        96 VAD~~N~rIrkfd~d-Gv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      ++=..++.|+.+|.. +.........            ...-....++. ..+++.++++-..++.|+.+++..
T Consensus       132 ~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          132 LSVSKDHALRLWNIQTDTLVAIFGGV------------EGHRDEVLSAD-YDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECST------------TSCSSCEEEEE-ECTTSSEEEEEETTSCEEEEESCS
T ss_pred             EEEeCCCeEEEEEeecCeEEEEeccc------------ccccCceeEEE-ECCCCCEEEEecCCCCEEEEECCC
Confidence            665567789999854 3221111000            00011234454 466777776666778899998765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=84.67  E-value=4.2  Score=42.31  Aligned_cols=74  Identities=9%  Similarity=0.070  Sum_probs=46.3

Q ss_pred             cceEEEcCCCCEEEEeCCCCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321           83 PKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI  161 (445)
Q Consensus        83 P~GIavD~dG~LYVAD~~N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI  161 (445)
                      ...|++.++|.++++-...+.|+.++... ...+.....+   +         .-..-.+++ ..++|.++++-...+.|
T Consensus       494 v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~---~---------H~~~V~~v~-fspdg~~lasgs~D~~v  560 (611)
T 1nr0_A          494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT---F---------HTAKVACVS-WSPDNVRLATGSLDNSV  560 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC---C---------CSSCEEEEE-ECTTSSEEEEEETTSCE
T ss_pred             eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeee---e---------cccceeEEE-ECCCCCEEEEEECCCcE
Confidence            46899999999777666677888888532 1111000000   0         011234554 57888888887778889


Q ss_pred             EEEECCCC
Q 013321          162 REIQLHDD  169 (445)
Q Consensus       162 r~i~l~~~  169 (445)
                      +..++...
T Consensus       561 ~lW~~~~~  568 (611)
T 1nr0_A          561 IVWNMNKP  568 (611)
T ss_dssp             EEEETTCT
T ss_pred             EEEECCCc
Confidence            99988653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=84.65  E-value=42  Score=37.51  Aligned_cols=71  Identities=7%  Similarity=0.069  Sum_probs=50.2

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      .-.+++++++|.++++-..++.|..++...   ++......      ++         -....+|+++++|.++++=..+
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~---~~~~~~~~------~h---------~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAET---GEKLLDIK------AH---------EDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEEEC------CC---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCC---CCEEEEec------cC---------CCCEEEEEEecCCCEEEEEeCC
Confidence            457899999999888888888999998763   33222211      11         1134689999999877666667


Q ss_pred             CEEEEEcCC
Q 013321          102 MAIRKISDT  110 (445)
Q Consensus       102 ~rIrkfd~d  110 (445)
                      +.|+.+|..
T Consensus       679 ~~v~vwd~~  687 (1249)
T 3sfz_A          679 KKVKIWDSA  687 (1249)
T ss_dssp             SEEEEEETT
T ss_pred             CeEEEEECC
Confidence            889999853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=84.28  E-value=43  Score=34.98  Aligned_cols=70  Identities=11%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      -.+|+++++|.++++-+.++.|+.++...   +... .+.+.                -..-.+|++.++|.++++=...
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~---~~~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~s~D  493 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAA---GVSTRRFVGH----------------TKDVLSVAFSLDNRQIVSASRD  493 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEECC----------------SSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCC---CcceeEEeCC----------------CCCEEEEEEeCCCCEEEEEeCC
Confidence            56889999999888888889999998763   3322 22221                1123588999999877766667


Q ss_pred             CEEEEEcCCC
Q 013321          102 MAIRKISDTG  111 (445)
Q Consensus       102 ~rIrkfd~dG  111 (445)
                      +.|+..|..+
T Consensus       494 ~~i~iwd~~~  503 (694)
T 3dm0_A          494 RTIKLWNTLG  503 (694)
T ss_dssp             SCEEEECTTS
T ss_pred             CEEEEEECCC
Confidence            8899998765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=83.94  E-value=27  Score=32.74  Aligned_cols=115  Identities=10%  Similarity=0.010  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE--EEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK--LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~--~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ....++++|+|.++++-..++.|..++...   ++..  .+.+.      +         -..-..|++.++|.++++=.
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~---~~~~~~~~~~~------h---------~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSS---PDQASSRFPVD------E---------EAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSC---TTSCCEECCCC------T---------TSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCC---CCCCccEEecc------C---------CCCEEEEEEeCCCCEEEEEe
Confidence            356889999988888877888888888763   2211  22110      0         12346899999998555433


Q ss_pred             CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCC
Q 013321          100 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHD  168 (445)
Q Consensus       100 ~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g-n~rIr~i~l~~  168 (445)
                      .+ .|+.+|...   +.++..-.        .   ....... ..+. .+++|.++++-.+ ++.|+.++.+.
T Consensus       234 ~~-~v~iwd~~~~~~~~~~~~~~--------~---~~~~~~~-~~~~-~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          234 DQ-TVVCFDLRKDVGTLAYPTYT--------I---PEFKTGT-VTYD-IDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             SS-BEEEEETTSSTTCBSSCCCB--------C--------CC-EEEE-ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CC-eEEEEEcCCCCcceeecccc--------c---ccccccc-eEEE-ECCCCCEEEEecCCCCcEEEEEEcc
Confidence            33 899998543   11111000        0   0000111 2344 5777876666444 67788877643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=83.84  E-value=33  Score=34.22  Aligned_cols=75  Identities=5%  Similarity=-0.037  Sum_probs=49.2

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCC-CCEEEEe
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G~LYVAD   98 (445)
                      .....++++++|. ++++-..++.|..++...   ++........      .++      -.....+++.++ |+++++=
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~------~~~------~~~v~~~~~~~~~~~~l~~~  225 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTH------HKQ------GSFVRDVEFSPDSGEFVITV  225 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSS------SCT------TCCEEEEEECSTTCCEEEEE
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeeeccc------CCC------CceEEEEEECCCCCCEEEEE
Confidence            3467899999887 777777888999998652   3332222111      000      003458999999 8876665


Q ss_pred             CCCCEEEEEcCC
Q 013321           99 TMNMAIRKISDT  110 (445)
Q Consensus        99 ~~N~rIrkfd~d  110 (445)
                      ..++.|+.+|..
T Consensus       226 ~~dg~i~vwd~~  237 (615)
T 1pgu_A          226 GSDRKISCFDGK  237 (615)
T ss_dssp             ETTCCEEEEETT
T ss_pred             eCCCeEEEEECC
Confidence            567889999843

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=83.77  E-value=4.5  Score=39.17  Aligned_cols=70  Identities=17%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      .-..|+++|+|.++++-+.++.|..++...   +++....-     .|+         -..-.+|++.|||.++++=...
T Consensus       271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~---~~~~~~~~-----~gH---------~~~V~~v~fSpdg~~laS~S~D  333 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLASNDNSIALVKLKD---LSMSKIFK-----QAH---------SFAITEVTISPDSTYVASVSAA  333 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTT---TEEEEEET-----TSS---------SSCEEEEEECTTSCEEEEEETT
T ss_pred             CeEeEEECCCCCceEEEcCCCEEEEEECCC---CcEEEEec-----Ccc---------cCCEEEEEECCCCCEEEEEeCC
Confidence            357899999999988888888999998762   33322111     111         1234699999999988887778


Q ss_pred             CEEEEEc
Q 013321          102 MAIRKIS  108 (445)
Q Consensus       102 ~rIrkfd  108 (445)
                      +.|++++
T Consensus       334 ~tvrvw~  340 (365)
T 4h5i_A          334 NTIHIIK  340 (365)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEE
Confidence            8899888

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=83.76  E-value=23  Score=33.46  Aligned_cols=112  Identities=19%  Similarity=0.189  Sum_probs=66.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ...+|+++|+|+++++-..++.|..++...............      +         -..-..|++.++|.++++=...
T Consensus       107 ~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------h---------~~~v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A          107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS------H---------TQDVKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC------C---------CSCEEEEEECSSSSCEEEEETT
T ss_pred             CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC------c---------CCCeEEEEECCCCCEEEEEeCC
Confidence            457899999999888888888888887652110011111111      0         1123578899999866665566


Q ss_pred             CEEEEEcCCC-c----EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 013321          102 MAIRKISDTG-V----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  166 (445)
Q Consensus       102 ~rIrkfd~dG-v----~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l  166 (445)
                      +.|+.++... .    .++.+        .         -..-.+|. ..++|.++++-...+.|+..+.
T Consensus       172 ~~i~~w~~~~~~~~~~~~~~~--------h---------~~~v~~l~-~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          172 DTVKLYREEEDDWVCCATLEG--------H---------ESTVWSLA-FDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             SCEEEEEEETTEEEEEEEECC--------C---------SSCEEEEE-ECTTSSEEEEEETTSCEEEEEE
T ss_pred             CcEEEEEecCCCEEEEEEecC--------C---------CCceEEEE-ECCCCCEEEEEeCCCeEEEecc
Confidence            7788887432 1    12211        0         01224454 4777877777666777777764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.34  E-value=40  Score=35.32  Aligned_cols=72  Identities=10%  Similarity=-0.004  Sum_probs=47.3

Q ss_pred             CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC--CCCEEEEe
Q 013321           22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIAD   98 (445)
Q Consensus        22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD   98 (445)
                      ....++++| +|.++++-..++.|..++....  .....+....               -.....+++.+  +|.++++=
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--TPNFTLTTGQ---------------ERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCS--SCSEEEECCC---------------TTCCCEEEECCSTTCCEEEEE
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cceeEEecCC---------------CCCEEEEEEEECCCCCEEEEE
Confidence            457888988 7778887777888888886531  1122222110               12345778877  88877776


Q ss_pred             CCCCEEEEEcCC
Q 013321           99 TMNMAIRKISDT  110 (445)
Q Consensus        99 ~~N~rIrkfd~d  110 (445)
                      ..++.|+.+|..
T Consensus       205 ~~dg~i~~~d~~  216 (814)
T 3mkq_A          205 SDDLTIKIWDYQ  216 (814)
T ss_dssp             CTTSEEEEEETT
T ss_pred             eCCCEEEEEECC
Confidence            778889999854

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=83.13  E-value=8.6  Score=37.10  Aligned_cols=70  Identities=11%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             cceEEEcCCCCEEEEeCCCCEEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCC
Q 013321           83 PKGLAVDDRGNIYIADTMNMAIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  159 (445)
Q Consensus        83 P~GIavD~dG~LYVAD~~N~rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~  159 (445)
                      -..|++.++|.++++=...+.|+.+|.. +.  .++..+.                -..-++|+ ..++|.++++-...+
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH----------------~~~V~~v~-fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH----------------SFAITEVT-ISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS----------------SSCEEEEE-ECTTSCEEEEEETTS
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc----------------cCCEEEEE-ECCCCCEEEEEeCCC
Confidence            3589999999977765567789999954 42  2221111                11234555 588999999888899


Q ss_pred             eEEEEECCCC
Q 013321          160 AIREIQLHDD  169 (445)
Q Consensus       160 rIr~i~l~~~  169 (445)
                      .|+.+++...
T Consensus       335 tvrvw~ip~~  344 (365)
T 4h5i_A          335 TIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEEEcCCC
Confidence            9999997643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=83.04  E-value=31  Score=32.31  Aligned_cols=115  Identities=8%  Similarity=-0.026  Sum_probs=72.1

Q ss_pred             CceEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           22 EPFSVAVSP--SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        22 ~P~gIAVdp--dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ....++++|  +|+++++-..++.|..++...   ++...+....              .-.....+++.++|.++++=.
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~--------------~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYED---DSQYIVHSAK--------------SDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSS---SCEEEEECCC--------------SSCCCCEEEECTTSCEEEEEC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC---CcEEEEEecC--------------CCCceEEEEECCCCCEEEEEc
Confidence            467899999  999998888889999998763   3333322111              011246899999999888766


Q ss_pred             CCCEEEEEcCC-C--c-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          100 MNMAIRKISDT-G--V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       100 ~N~rIrkfd~d-G--v-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      .++.|+.+|.. +  + .++.++.                -....+|. ..++|.++++-..+ .|+.+++....+
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h----------------~~~v~~l~-fs~~g~~l~s~~~~-~v~iwd~~~~~~  247 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDE----------------EAKIKEVK-FADNGYWMVVECDQ-TVVCFDLRKDVG  247 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCT----------------TSCEEEEE-ECTTSSEEEEEESS-BEEEEETTSSTT
T ss_pred             CCCEEEEEECCCCCCCccEEeccC----------------CCCEEEEE-EeCCCCEEEEEeCC-eEEEEEcCCCCc
Confidence            67889999954 3  2 2321100                01223444 46677655554444 899999876543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=82.97  E-value=32  Score=32.43  Aligned_cols=115  Identities=8%  Similarity=0.040  Sum_probs=66.6

Q ss_pred             CceEEEEcCCC-cEEEEeCCCC---eEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEE
Q 013321           22 EPFSVAVSPSG-ELLVLDSENS---NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYI   96 (445)
Q Consensus        22 ~P~gIAVdpdG-~LYVaDs~n~---rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV   96 (445)
                      ....++++|+| .++++-..++   .|..++..... .....+.      .+         .-.....|++.+ +|.+++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~------~~---------~~~~v~~~~~s~~~~~~l~  279 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLN------QG---------HQKGILSLDWCHQDEHLLL  279 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCC------SC---------CSSCEEEEEECSSCSSCEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEee------cC---------ccCceeEEEeCCCCCCeEE
Confidence            45677777765 4555555555   67777654210 0000000      00         112356899998 888777


Q ss_pred             EeCCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc
Q 013321           97 ADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus        97 AD~~N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      +=..++.|+.+|.. +  +.++.+..                 ....++. ..+++ .++++-...+.|+.+++....
T Consensus       280 s~~~dg~v~~wd~~~~~~~~~~~~~~-----------------~~v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESAEQLSQFPARG-----------------NWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EEESSSEEEEECSSSCCEEEEEECSS-----------------SCCCCEE-ECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             EEeCCCCEEEeeCCCCccceeecCCC-----------------CceEEEE-ECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            66668899999954 3  23332210                 1223444 45666 788877778899999876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=82.65  E-value=23  Score=33.90  Aligned_cols=141  Identities=12%  Similarity=0.114  Sum_probs=72.0

Q ss_pred             CCceEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCC--CccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEE
Q 013321           21 MEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPY--SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA   97 (445)
Q Consensus        21 ~~P~gIAVdpdG-~LYVaDs~n~rI~kid~dg~~~--G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA   97 (445)
                      .....++++|+| +++++-..++.|..++......  ..+..+.+.. .. .  ...........-..|++.++|.++++
T Consensus       227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~v~~~~~s~~g~~l~~  302 (447)
T 3dw8_B          227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE-DP-S--NRSFFSEIISSISDVKFSHSGRYMMT  302 (447)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred             cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCC-Cc-c--ccccccccCceEEEEEECCCCCEEEE
Confidence            346899999998 8888888889999998763210  0023332221 00 0  00000000113468999999996665


Q ss_pred             eCCCCEEEEEcCC--C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321           98 DTMNMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus        98 D~~N~rIrkfd~d--G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      =.. +.|+.+|..  +  +.++.+.....  ...........+...+.+. ..+++..+++-..++.|+.+++...
T Consensus       303 ~~~-~~v~iwd~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~i~~~~~~~-~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          303 RDY-LSVKVWDLNMENRPVETYQVHEYLR--SKLCSLYENDCIFDKFECC-WNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             EES-SEEEEEETTCCSSCSCCEESCGGGT--TTHHHHHHTSGGGCCCCEE-ECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             eeC-CeEEEEeCCCCccccceeecccccc--ccccccccccccccceEEE-ECCCCCEEEEeccCCEEEEEEcCCC
Confidence            555 889999853  3  33333221000  0000000000111122343 4566666666666777777776553

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=82.47  E-value=25  Score=30.85  Aligned_cols=73  Identities=23%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC-
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT-   99 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~-   99 (445)
                      ...+++++|+|.++++.. ++.|++++..+.  ++...+....              .-....++++.++|. |+++.. 
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~--~~~~~~~~~~--------------~~~~~~~~~~spdg~~l~~~~~~  105 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGD--PSPEKVDTGF--------------ATICNNDHGISPDGALYAISDKV  105 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSC--CSCEECCCTT--------------CCCBCSCCEECTTSSEEEEEECT
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCC--CCceEecccc--------------ccccccceEECCCCCEEEEEEeC
Confidence            578999999999666654 678999987630  2233222110              012346789999998 444442 


Q ss_pred             --CCCEEEEEcCCC
Q 013321          100 --MNMAIRKISDTG  111 (445)
Q Consensus       100 --~N~rIrkfd~dG  111 (445)
                        ...+|..++..+
T Consensus       106 ~~~~~~l~~~~~~~  119 (297)
T 2ojh_A          106 EFGKSAIYLLPSTG  119 (297)
T ss_dssp             TTSSCEEEEEETTC
T ss_pred             CCCcceEEEEECCC
Confidence              357888887544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=82.36  E-value=38  Score=32.85  Aligned_cols=114  Identities=10%  Similarity=0.013  Sum_probs=61.1

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....++++++|..+++-..++.|..++...   ++........               -.....++++  +..+++=...
T Consensus       312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h---------------~~~v~~~~~~--~~~l~s~s~d  371 (464)
T 3v7d_B          312 RIYSTIYDHERKRCISASMDTTIRIWDLEN---GELMYTLQGH---------------TALVGLLRLS--DKFLVSAAAD  371 (464)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTT---TEEEEEECCC---------------SSCEEEEEEC--SSEEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CcEEEEEeCC---------------CCcEEEEEEc--CCEEEEEeCC
Confidence            356777777777777776777777777652   3322221110               1123466665  4555554456


Q ss_pred             CEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee
Q 013321          102 MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  173 (445)
Q Consensus       102 ~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~  173 (445)
                      +.|+.+|... ........                 ..+..+++..+++.++++-. .+.|+.+++....+..
T Consensus       372 g~v~vwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          372 GSIRGWDANDYSRKFSYHH-----------------TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             SEEEEEETTTCCEEEEEEC-----------------TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred             CcEEEEECCCCceeeeecC-----------------CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence            7788888543 22222110                 01112223455666655544 6788888877655543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=82.06  E-value=40  Score=32.95  Aligned_cols=122  Identities=9%  Similarity=0.030  Sum_probs=68.1

Q ss_pred             CceEEEEcCCCcE-EEEeCCCCeEEEEeCC--CCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           22 EPFSVAVSPSGEL-LVLDSENSNIYKISTS--LSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        22 ~P~gIAVdpdG~L-YVaDs~n~rI~kid~d--g~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      ...+++++++|.. +++-..++.|..++..  ..  ..+..+.+..              .-..+.+|+++++|. |+++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~--------------~~~~v~~~~~sp~~~~l~~~  167 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFC--------------FSKRPNAISIAEDDTTVIIA  167 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEE--------------CSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeeccc--------------CCCCceEEEEcCCCCEEEEE
Confidence            4689999999986 4777677888888765  21  1222222110              012467999999998 5555


Q ss_pred             eCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCC---CeEEEEECCCCeEEEEECCCCce
Q 013321           98 DTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS---CSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus        98 D~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~d---G~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      +. .+.|+.++.........        ...  ..........++.+ .++   +.++++-...+.|+.+++....+
T Consensus       168 ~~-~g~v~~~~~~~~~~~~~--------~~~--~~~~h~~~v~~~~~-sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          168 DK-FGDVYSIDINSIPEEKF--------TQE--PILGHVSMLTDVHL-IKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             ET-TSEEEEEETTSCCCSSC--------CCC--CSEECSSCEEEEEE-EECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             eC-CCcEEEEecCCcccccc--------cce--eeecccCceEEEEE-cCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            54 67788887432110000        000  00001123345543 455   65666555677888888765443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=81.96  E-value=13  Score=35.00  Aligned_cols=114  Identities=9%  Similarity=-0.023  Sum_probs=63.2

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-CCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSP-YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~-~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ...+|+++++|+++++-..++.|..++..... ......+.+.                -.....|++.++|.++++=..
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~  120 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL----------------NRAATFVRWSPNEDKFAVGSG  120 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC----------------SSCEEEEECCTTSSCCEEEES
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc----------------CCceEEEEECCCCCEEEEEec
Confidence            45789999988877777777888888765311 0001111110                113458888888885555445


Q ss_pred             CCEEEEEcCCC------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          101 NMAIRKISDTG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       101 N~rIrkfd~dG------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      ++.|+.+|.+.      ...+.+.                .-....++. ..+++.++++-...+.|+.+++..
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~----------------h~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~  177 (377)
T 3dwl_C          121 ARVISVCYFEQENDWWVSKHLKRP----------------LRSTILSLD-WHPNNVLLAAGCADRKAYVLSAYV  177 (377)
T ss_dssp             SSCEEECCC-----CCCCEEECSS----------------CCSCEEEEE-ECTTSSEEEEEESSSCEEEEEECC
T ss_pred             CCeEEEEEECCcccceeeeEeecc----------------cCCCeEEEE-EcCCCCEEEEEeCCCEEEEEEEEe
Confidence            67788887443      1222110                011234444 466777777766678888888753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=81.74  E-value=29  Score=31.07  Aligned_cols=109  Identities=14%  Similarity=0.074  Sum_probs=62.4

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....+++.++|. +++-..++.|..++...   ++........               -.....|++.++|.|+.+. .+
T Consensus       186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~---~~~~~~~~~~---------------~~~i~~~~~~~~~~l~~~~-~d  245 (313)
T 3odt_A          186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHT---GDVLRTYEGH---------------ESFVYCIKLLPNGDIVSCG-ED  245 (313)
T ss_dssp             CEEEEEEEETTE-EEEEETTSEEEEEETTT---CCEEEEEECC---------------SSCEEEEEECTTSCEEEEE-TT
T ss_pred             cEEEEEEcCCCe-EEEccCCCeEEEEECCc---hhhhhhhhcC---------------CceEEEEEEecCCCEEEEe-cC
Confidence            456778877777 44555667788777652   2322221110               1234689999988766665 46


Q ss_pred             CEEEEEcC-CC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321          102 MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       102 ~rIrkfd~-dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      +.|+.+|. ++  +.++....                 ....++. ..+++.++++ ...+.|+.+++...
T Consensus       246 g~v~iwd~~~~~~~~~~~~~~-----------------~~i~~~~-~~~~~~~~~~-~~dg~i~iw~~~~~  297 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVITLPA-----------------ISIWSVD-CMSNGDIIVG-SSDNLVRIFSQEKS  297 (313)
T ss_dssp             SEEEEECTTTCCEEEEEECSS-----------------SCEEEEE-ECTTSCEEEE-ETTSCEEEEESCGG
T ss_pred             CEEEEEECCCCceeEEEeccC-----------------ceEEEEE-EccCCCEEEE-eCCCcEEEEeCCCC
Confidence            88999984 34  22322110                 0123443 4667775554 44678888887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=81.30  E-value=52  Score=33.78  Aligned_cols=73  Identities=11%  Similarity=0.213  Sum_probs=43.4

Q ss_pred             ceEEEEcCCCc-EEEEeCC-------CCeEEEEeCCC-CCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321           23 PFSVAVSPSGE-LLVLDSE-------NSNIYKISTSL-SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN   93 (445)
Q Consensus        23 P~gIAVdpdG~-LYVaDs~-------n~rI~kid~dg-~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~   93 (445)
                      ..+++++|||. |+++...       ...|+.++.++ ...+....+....               -.....+++.+||.
T Consensus       190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~---------------~~~~~~~~~spdg~  254 (662)
T 3azo_A          190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP---------------EEAIAQAEWAPDGS  254 (662)
T ss_dssp             ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET---------------TBCEEEEEECTTSC
T ss_pred             ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC---------------CceEcceEECCCCe
Confidence            45678999997 4444322       25788888762 1001344443221               11355788999998


Q ss_pred             EEEEeCCCC--EEEEEcCC
Q 013321           94 IYIADTMNM--AIRKISDT  110 (445)
Q Consensus        94 LYVAD~~N~--rIrkfd~d  110 (445)
                      ||++-..++  +|.++|.+
T Consensus       255 l~~~~~~~~~~~l~~~~~~  273 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPA  273 (662)
T ss_dssp             EEEEECTTSSCEEEEECTT
T ss_pred             EEEEECCCCCeEEEEEECC
Confidence            766544444  89999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=81.22  E-value=14  Score=34.67  Aligned_cols=132  Identities=12%  Similarity=-0.020  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-CccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPY-SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~-G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ....++++++|.++++-..++.|..++...... .....+.+.               .-.....|++.++|.++++=..
T Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C          102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------------LRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS---------------CCSCEEEEEECTTSSEEEEEES
T ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc---------------cCCCeEEEEEcCCCCEEEEEeC
Confidence            356777777777666655666777766542110 001222110               0123468999999987766556


Q ss_pred             CCEEEEEcCCC--cEE-EecCcccCC--CCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          101 NMAIRKISDTG--VTT-IAGGKWSRG--VGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       101 N~rIrkfd~dG--v~t-iaGg~~G~g--~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      .+.|+.+|...  +.. ......+..  .+..  ......-....++. ..+++.++++-..++.|+.+++....+
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~-~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV--CAEYPSGGWVHAVG-FSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE--EECCCCSSSEEEEE-ECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhh--hhcccCCceEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            67788887421  000 000000000  0000  00000111234444 577777777666778888888776544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=80.70  E-value=24  Score=33.71  Aligned_cols=113  Identities=12%  Similarity=0.074  Sum_probs=61.7

Q ss_pred             CceEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           22 EPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        22 ~P~gIAVdpd-G~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      .+..|++.|+ +.++++-..++.|..++...   ++. ..+.+.                -..-..|++.++|. ++++=
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~---~~~~~~~~~~----------------~~~v~~l~~sp~~~~~lasg  288 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKN---PDSAQTSAVH----------------SQNITGLAYSYHSSPFLASI  288 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSC---GGGCEEECCC----------------SSCEEEEEECSSSSCCEEEE
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCC---CcEeEEEecc----------------ceeEEEEEEcCCCCCEEEEE
Confidence            4677888885 45777666777888887652   222 222211                11235788888764 44433


Q ss_pred             CCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321           99 TMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        99 ~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      ...+.|+.+|...-..+...      +..         ..-.+|++.+.++.++++-...+.|+..++..
T Consensus       289 s~D~~i~iwd~~~~~~~~~~------~H~---------~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          289 SEDCTVAVLDADFSEVFRDL------SHR---------DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             ETTSCEEEECTTSCEEEEEC------CCS---------SCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             eCCCEEEEEECCCCcEeEEC------CCC---------CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            34567888885542221110      000         11234544334677776666677787777644

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=80.44  E-value=59  Score=33.90  Aligned_cols=118  Identities=15%  Similarity=0.078  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC--CEEEEeCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG--NIYIADTM  100 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG--~LYVAD~~  100 (445)
                      -.+|+++++|.++++-+.++.|..++..+   .....+....   .++         -..-.++++.+++  .++++=..
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~---~~h---------~~~v~~~~~~~~~~~~~l~s~s~  539 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLG---ECKYTISEGG---EGH---------RDWVSCVRFSPNTLQPTIVSASW  539 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTS---CEEEEECSST---TSC---------SSCEEEEEECSCSSSCEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCC---CcceeeccCC---CCC---------CCcEEEEEEeCCCCcceEEEEeC
Confidence            45677777777666666666777766542   1111111110   111         1123577888776  35555555


Q ss_pred             CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee
Q 013321          101 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  173 (445)
Q Consensus       101 N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~  173 (445)
                      .+.|+.+|...   +.++.+..                 ..-.++ ...+++.++++-...+.|+.+++....+..
T Consensus       540 d~~v~vwd~~~~~~~~~~~~h~-----------------~~v~~v-~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          540 DKTVKVWNLSNCKLRSTLAGHT-----------------GYVSTV-AVSPDGSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             TSCEEEEETTTCCEEEEECCCS-----------------SCEEEE-EECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCcEEEEEcCCC-----------------CCEEEE-EEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            67788888543   22221110                 112334 356777777777777888888876655443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=80.12  E-value=43  Score=32.04  Aligned_cols=73  Identities=21%  Similarity=0.266  Sum_probs=43.4

Q ss_pred             CceEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEeC
Q 013321           22 EPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT   99 (445)
Q Consensus        22 ~P~gIAVdpdG-~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~   99 (445)
                      ....+++.+++ .++++-..++.|+.++...   ++........             ..-.....+++.+ ++.++++=.
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~-------------~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRC---PKPASQIGCS-------------APGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTS---SSCEEECC-----------------CCCEEEEEECSSCTTEEEEEE
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccc---cceeeeeecc-------------eeeccceeeeecCCCCcceEEec
Confidence            34677777765 4777766677777777652   2322221110             0112356788887 456777656


Q ss_pred             CCCEEEEEcCC
Q 013321          100 MNMAIRKISDT  110 (445)
Q Consensus       100 ~N~rIrkfd~d  110 (445)
                      .++.|+.+|..
T Consensus       235 ~dg~v~~wd~~  245 (344)
T 4gqb_B          235 ENGTVSLVDTK  245 (344)
T ss_dssp             TTSEEEEEESC
T ss_pred             cCCcEEEEECC
Confidence            67889999853

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=80.10  E-value=80  Score=35.20  Aligned_cols=69  Identities=13%  Similarity=0.126  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....++++++|.++++-..++.|..++...   +........      +         -....+|++.++|..+++-...
T Consensus       842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~---~~~~~~~~~------h---------~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          842 TIQYCDFSPYDHLAVIALSQYCVELWNIDS---RLKVADCRG------H---------LSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             CCCEEEECSSTTEEEEECSSSCEEEEETTT---TEEEEEECC------C---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CceeeecCC------C---------ccceEEEEECCCCCEEEEEeCC
Confidence            467899999999888888888999998763   222222111      1         2245689999999877766667


Q ss_pred             CEEEEEc
Q 013321          102 MAIRKIS  108 (445)
Q Consensus       102 ~rIrkfd  108 (445)
                      +.|+.++
T Consensus       904 g~v~vw~  910 (1249)
T 3sfz_A          904 QTIRVWE  910 (1249)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            7788776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	445
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	9e-06
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	3e-04
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	0.003

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.6 bits (104), Expect = 9e-06
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 56  RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTI 115
           R +++     G +G ++G+        P G+AV+ + +I +ADT N  I+     G    
Sbjct: 3   RQRMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF 57

Query: 116 AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC 149
             G+  +    +  P+  A   N  D++    S 
Sbjct: 58  QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 91

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 77  GARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 111
              +N P  +AVD    +Y+AD  N  + K++   
Sbjct: 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 19/128 (14%)

Query: 14  FEGSKFGMEPFSVAVSPSGELLVLDSENSN-IYKISTSLSPYSRPKLVAGSPEGYYGHVD 72
           F G  F + P  VAV  +G + V        + K++T                       
Sbjct: 7   FTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATG------------------STGT 48

Query: 73  GRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSE 132
                  +  P+GLAVD  G +Y+ D  N  +   + +   T+           +   ++
Sbjct: 49  TVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ 108

Query: 133 DAKFSNDF 140
            A +  D 
Sbjct: 109 GAVYVADR 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.58
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.57
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.54
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.53
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.24
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.24
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.23
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.18
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.16
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.13
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.68
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.02
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.75
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.61
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.44
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.41
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.38
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.36
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.29
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.97
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.62
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.45
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.01
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.55
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	95.23
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.07
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	95.05
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	94.9
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	94.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	94.32
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.03
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	93.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.51
d1tbga_	340	beta1-subunit of the signal-transducing G protein	92.16
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	91.5
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	91.48
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	91.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	90.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	90.78
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	90.46
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	88.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	88.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	88.77
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	88.75
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	88.08
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.67
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	86.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	86.72
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	86.4
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	82.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	82.48

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=9.5e-15  Score=136.82  Aligned_cols=116  Identities=24%  Similarity=0.396  Sum_probs=94.2

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ...|.+|+++++|+|||+|..+++|.+++.++    ........              ..|..|.||++|++|+|||+|.
T Consensus       139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~----~~~~~~~~--------------~~~~~p~gi~~d~~g~l~vsd~  200 (260)
T d1rwia_         139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES----NNQVVLPF--------------TDITAPWGIAVDEAGTVYVTEH  200 (260)
T ss_dssp             CCSCCEEEECTTCCEEEEEGGGTEEEEECTTT----CCEEECCC--------------SSCCSEEEEEECTTCCEEEEET
T ss_pred             cCCcceeeecCCCCEeeecccccccccccccc----ceeeeeec--------------cccCCCccceeeeeeeeeeeec
Confidence            36799999999999999999999999999874    22232221              2478999999999999999999


Q ss_pred             CCCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321          100 MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       100 ~N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                      .+++|.+|+.++ ..++..               ...|..|.+|+ ++++|.|||+|.+++||++|+..++
T Consensus       201 ~~~~i~~~~~~~~~~~~~~---------------~~~~~~P~~i~-~d~~g~l~vad~~~~rI~~i~~~~~  255 (260)
T d1rwia_         201 NTNQVVKLLAGSTTSTVLP---------------FTGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSLEH  255 (260)
T ss_dssp             TTTEEEEECTTCSCCEECC---------------CCSCCCEEEEE-ECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCEEEEEeCCCCeEEEEc---------------cCCCCCeEEEE-EeCCCCEEEEECCCCEEEEEeCCCC
Confidence            999999999877 333321               12367899996 6899999999999999999987553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=2.8e-14  Score=134.94  Aligned_cols=152  Identities=18%  Similarity=0.239  Sum_probs=111.0

Q ss_pred             CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCC---Cc--------------------cc-------
Q 013321           20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE---GY--------------------YG-------   69 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~---G~--------------------~G-------   69 (445)
                      +..|.||||+++|+|||+|..|+||++++++|.    .....+...   +.                    .+       
T Consensus        22 f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          22 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR----FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC----EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             ECCccEEEEcCCCCEEEEECCCCEEEEEeCCCC----EEEEecccCCCcccccccccccccccccccceeccCCcccccc
Confidence            478999999999999999999999999998853    222222110   00                    00       


Q ss_pred             -CCCCC----ccCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEE
Q 013321           70 -HVDGR----PRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVY  144 (445)
Q Consensus        70 -~~dG~----~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~  144 (445)
                       ..+|.    .....++.|.++++|++|++|++|..+++|.+++.+|..+...+.             ...+..|.+++ 
T Consensus        98 ~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~-------------~~~~~~~~~i~-  163 (279)
T d1q7fa_          98 YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC-------------SKHLEFPNGVV-  163 (279)
T ss_dssp             ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC-------------TTTCSSEEEEE-
T ss_pred             ccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccc-------------cccccccceee-
Confidence             01222    123468899999999999999999999999999999943322111             23466788886 


Q ss_pred             ECCCCeEEEEECCCCeEEEEECCCCceeecC---CCCccceEEEEecc
Q 013321          145 VGSSCSLLVIDRGNQAIREIQLHDDDCSDNY---DDTFHLGIFVLVAA  189 (445)
Q Consensus       145 vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~---~~g~P~gIav~~~a  189 (445)
                      ++++++|||+|..+++|++++.++.......   ....|.||+++...
T Consensus       164 ~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G  211 (279)
T d1q7fa_         164 VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG  211 (279)
T ss_dssp             ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTC
T ss_pred             eccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCC
Confidence            7999999999999999999999887654433   23468888886543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=1e-13  Score=129.72  Aligned_cols=135  Identities=19%  Similarity=0.281  Sum_probs=106.6

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.+|+++++|+|||+|..++++.+++..+    ....+...              ..+..|.+|+++++|+|||+|..
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~p~~i~~~~~g~~~v~~~~  159 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGS----KTQTVLPF--------------TGLNDPDGVAVDNSGNVYVTDTD  159 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTC----SSCEECCC--------------CSCCSCCEEEECTTCCEEEEEGG
T ss_pred             eecccccccccceeEeecccccccccccccc----ceeeeeee--------------cccCCcceeeecCCCCEeeeccc
Confidence            6799999999999999999999999999873    22222221              13778999999999999999999


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeecCCC--C
Q 013321          101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD--T  178 (445)
Q Consensus       101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~~~~--g  178 (445)
                      +++|.+++.++.......              ...+..|.+|+ ++++|+|||+|.++++|.+|+..+.........  .
T Consensus       160 ~~~i~~~d~~~~~~~~~~--------------~~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~  224 (260)
T d1rwia_         160 NNRVVKLEAESNNQVVLP--------------FTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  224 (260)
T ss_dssp             GTEEEEECTTTCCEEECC--------------CSSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCC
T ss_pred             cccccccccccceeeeee--------------ccccCCCccce-eeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCC
Confidence            999999998873322111              23467899986 689999999999999999999888766554333  4


Q ss_pred             ccceEEEEec
Q 013321          179 FHLGIFVLVA  188 (445)
Q Consensus       179 ~P~gIav~~~  188 (445)
                      .|.+|++...
T Consensus       225 ~P~~i~~d~~  234 (260)
T d1rwia_         225 TPLAVAVDSD  234 (260)
T ss_dssp             CEEEEEECTT
T ss_pred             CeEEEEEeCC
Confidence            6888888754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=2.7e-13  Score=128.02  Aligned_cols=151  Identities=16%  Similarity=0.240  Sum_probs=113.4

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      +|.....+  +......|.+++++++|.+|++|..++++.+++++    |++....+..             ..+..|.+
T Consensus       101 ~g~~~~~~--~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~----g~~~~~~g~~-------------~~~~~~~~  161 (279)
T d1q7fa_         101 YGQFVRKF--GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN----GNVLHKFGCS-------------KHLEFPNG  161 (279)
T ss_dssp             TSCEEEEE--CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEEECT-------------TTCSSEEE
T ss_pred             cccceeec--CCCcccccceeccccCCcEEEEeeccceeeEeccC----Cceeeccccc-------------ccccccce
Confidence            44444443  23344689999999999999999999999999998    4443333321             24788999


Q ss_pred             EEEcCCCCEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-CCeEEEE
Q 013321           86 LAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREI  164 (445)
Q Consensus        86 IavD~dG~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g-n~rIr~i  164 (445)
                      |++|++|+|||+|..+++|.++|.+|..+...+.             ...+..|.+|+ +|++|+|||+|.. +++|.+|
T Consensus       162 i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~-------------~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         162 VVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG-------------EGITNYPIGVG-INSNGEILIADNHNNFNLTIF  227 (279)
T ss_dssp             EEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC-------------TTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEE
T ss_pred             eeeccceeEEeeeccccceeeeecCCceeeeecc-------------cccccCCcccc-cccCCeEEEEECCCCcEEEEE
Confidence            9999999999999999999999999954433321             23577899986 7999999999986 4589999


Q ss_pred             ECCCCceee---cCCCCccceEEEEecc
Q 013321          165 QLHDDDCSD---NYDDTFHLGIFVLVAA  189 (445)
Q Consensus       165 ~l~~~~~~~---~~~~g~P~gIav~~~a  189 (445)
                      +.++.....   ......|.++++....
T Consensus       228 ~~~G~~~~~~~~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         228 TQDGQLISALESKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             CTTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             CCCCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence            988865433   2233468888887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.36  E-value=4.6e-12  Score=122.35  Aligned_cols=134  Identities=14%  Similarity=0.204  Sum_probs=95.3

Q ss_pred             EEEecCCCCCCCceEEEEcCCCcEEEEeCCC------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcc
Q 013321           11 ETVFEGSKFGMEPFSVAVSPSGELLVLDSEN------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK   84 (445)
Q Consensus        11 ~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~   84 (445)
                      ..+.........|++++++++|+|||+|..+      +.|+++++++   +.+..+..                .+..|+
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg---~~~~~~~~----------------~~~~pn  180 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQ----------------NISVAN  180 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEE----------------EESSEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc---ceeEEEee----------------ccceee
Confidence            3444444445779999999999999999754      4589998874   23344432                266899


Q ss_pred             eEEEcCCCC-EEEEeCCCCEEEEEc--CCCcEEE-ecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCe
Q 013321           85 GLAVDDRGN-IYIADTMNMAIRKIS--DTGVTTI-AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA  160 (445)
Q Consensus        85 GIavD~dG~-LYVAD~~N~rIrkfd--~dGv~ti-aGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~r  160 (445)
                      ||+++++|+ |||+|+.+++|++|+  .+|.... .+...         ......+..|.+|+ +|.+|+|||++.++++
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~---------~~~~~~~~~PdGl~-vD~~G~l~Va~~~~g~  250 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI---------PYYFTGHEGPDSCC-IDSDDNLYVAMYGQGR  250 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE---------EEECCSSSEEEEEE-EBTTCCEEEEEETTTE
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceecccccee---------eeccCCccceeeee-EcCCCCEEEEEcCCCE
Confidence            999999987 999999999999997  3442211 11100         00111233477885 7999999999999999


Q ss_pred             EEEEECCCCceee
Q 013321          161 IREIQLHDDDCSD  173 (445)
Q Consensus       161 Ir~i~l~~~~~~~  173 (445)
                      |++|++++.....
T Consensus       251 V~~~~p~G~~l~~  263 (319)
T d2dg1a1         251 VLVFNKRGYPIGQ  263 (319)
T ss_dssp             EEEECTTSCEEEE
T ss_pred             EEEECCCCcEEEE
Confidence            9999998865543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.24  E-value=3.4e-11  Score=116.33  Aligned_cols=135  Identities=15%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             CCceEEEEcCCCcEEEEeCC---------------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321           21 MEPFSVAVSPSGELLVLDSE---------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~---------------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      ..|++++++++|+|||+|..               .++|++++++    |+...++.                .+..|+|
T Consensus       117 ~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d----g~~~~~~~----------------~~~~pNG  176 (314)
T d1pjxa_         117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVDT----------------AFQFPNG  176 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEEE----------------EESSEEE
T ss_pred             CCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec----CceeEeeC----------------Ccceeee
Confidence            46999999999999999964               3578888887    44444443                2678999


Q ss_pred             EEEcCCCC-----EEEEeCCCCEEEEEc--CCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC
Q 013321           86 LAVDDRGN-----IYIADTMNMAIRKIS--DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  158 (445)
Q Consensus        86 IavD~dG~-----LYVAD~~N~rIrkfd--~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn  158 (445)
                      |+++++++     |||+|+.+++|++|+  .+|........     ....    ......|.+|+ +|.+|+|||++.++
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~-----~~~~----~~~~~~pdGia-vD~~GnlyVa~~~~  246 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW-----GHIP----GTHEGGADGMD-FDEDNNLLVANWGS  246 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE-----EECC----CCSSCEEEEEE-EBTTCCEEEEEETT
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEE-----EEcc----ccccccceeeE-EecCCcEEEEEcCC
Confidence            99988764     999999999999987  34421100000     0000    00122477775 79999999999999


Q ss_pred             CeEEEEECCCCce-ee-cCCCCccceEEE
Q 013321          159 QAIREIQLHDDDC-SD-NYDDTFHLGIFV  185 (445)
Q Consensus       159 ~rIr~i~l~~~~~-~~-~~~~g~P~gIav  185 (445)
                      ++|++|++++... .. ......|.++++
T Consensus       247 g~I~~~dp~~g~~~~~i~~p~~~~t~~af  275 (314)
T d1pjxa_         247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEEECCCCCEEEEEE
Confidence            9999999886432 22 222345555555

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=2.5e-10  Score=108.19  Aligned_cols=147  Identities=16%  Similarity=0.178  Sum_probs=108.0

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcc
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK   84 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~   84 (445)
                      +|...+++....  ...|.+||||. .++||++|..+++|.++++++.   ...+++..               .+..|.
T Consensus        66 ~g~~~~~v~~~~--~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---~~~~l~~~---------------~l~~p~  125 (263)
T d1npea_          66 HGGEPTTIIRQD--LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVLFDT---------------GLVNPR  125 (263)
T ss_dssp             SSCCCEEEECTT--CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSSEE
T ss_pred             ccCCcEEEEEec--cccccEEEEeccCCeEEEeccCCCEEEEEecCCc---eEEEEecc---------------cccCCc
Confidence            344445554321  24799999997 7889999999999999999853   22333322               267899


Q ss_pred             eEEEcC-CCCEEEEeCC--CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCC
Q 013321           85 GLAVDD-RGNIYIADTM--NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  159 (445)
Q Consensus        85 GIavD~-dG~LYVAD~~--N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~  159 (445)
                      +|++|+ .|.||++|.+  +.+|.+.+.+|  ..++..                ..+..|.+|++...++.||++|.+.+
T Consensus       126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~----------------~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ----------------DNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC----------------TTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee----------------ecccccceEEEeecCcEEEEEeCCCC
Confidence            999998 7779999987  45799999888  333321                13567899986567789999999999


Q ss_pred             eEEEEECCCCceee-cCCCCccceEEEEec
Q 013321          160 AIREIQLHDDDCSD-NYDDTFHLGIFVLVA  188 (445)
Q Consensus       160 rIr~i~l~~~~~~~-~~~~g~P~gIav~~~  188 (445)
                      +|.++++++..+.. ..+...|.+|++..+
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~~P~~lav~~~  219 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQYPFAVTSYGK  219 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCCSEEEEEEETT
T ss_pred             EEEEEECCCCCeEEEECCCCCcEEEEEECC
Confidence            99999999866543 344456888887754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.23  E-value=2.3e-10  Score=110.40  Aligned_cols=141  Identities=16%  Similarity=0.175  Sum_probs=100.3

Q ss_pred             CCceEEEEcCCCcEEEEeCC-------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321           21 MEPFSVAVSPSGELLVLDSE-------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN   93 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~-------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~   93 (445)
                      ..|.|++++++|+|||++..       +++|+++++.+   +....+.... ...          ....|.||+++++|+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~---~~~~~~~~~~-~~~----------~~g~P~Gl~~~~dg~   83 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT---GKKTVICKPE-VNG----------YGGIPAGCQCDRDAN   83 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT---CCEEEEECCE-ETT----------EECCEEEEEECSSSS
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCC---CcEEEEECCc-ccc----------CCCcceeEEEeCCCC
Confidence            45999999999999999865       47899999874   3344443221 000          123699999999987


Q ss_pred             -EEEEeCCCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC--------------
Q 013321           94 -IYIADTMNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG--------------  157 (445)
Q Consensus        94 -LYVAD~~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g--------------  157 (445)
                       |||+|.. ++|.+++.+|. .+++...           .....|..|++++ ++++|+|||+|..              
T Consensus        84 ~l~vad~~-~~i~~~~~~g~~~~~~~~~-----------~~g~~~~~pndl~-~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          84 QLFVADMR-LGLLVVQTDGTFEEIAKKD-----------SEGRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEETT-TEEEEEETTSCEEECCSBC-----------TTSCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             EEEEEECC-CeEEEEeCCCcEEEEEecc-----------ccccccCCCcEEE-ECCCCCEEEecCccCcccccccceecc
Confidence             8999975 68999999884 3332211           1123577899997 6999999999964              


Q ss_pred             -CCeEEEEECCCCceeecCCCCccceEEEEec
Q 013321          158 -NQAIREIQLHDDDCSDNYDDTFHLGIFVLVA  188 (445)
Q Consensus       158 -n~rIr~i~l~~~~~~~~~~~g~P~gIav~~~  188 (445)
                       .++|+++++++...........|.||++...
T Consensus       151 ~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d  182 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHM  182 (314)
T ss_dssp             SCEEEEEECTTSCEEEEEEEESSEEEEEEEEC
T ss_pred             CCceEEEEeecCceeEeeCCcceeeeeEECCC
Confidence             3489999988765544444567888887654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.8e-10  Score=107.79  Aligned_cols=137  Identities=17%  Similarity=0.143  Sum_probs=102.7

Q ss_pred             CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321           21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD   98 (445)
                      ..|.|||||. .++||++|..+++|.+++.+|..   ...+...               .+..|.+|++|+ +|.||++|
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~~~~~~---------------~~~~P~~l~vd~~~g~ly~~~  138 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRE---------------NGSKPRAIVVDPVHGFMYWTD  138 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEEC---------------TTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCce---EEEEEcC---------------CCCCcceEEEEcccCeEEEec
Confidence            5799999997 78899999999999999998532   2222211               267899999998 78899999


Q ss_pred             CCC-CEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec-
Q 013321           99 TMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-  174 (445)
Q Consensus        99 ~~N-~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~-  174 (445)
                      .+. .+|.+.+.+|  ..++..                ..+..|.+|++...++.||++|...++|.++++++..+... 
T Consensus       139 ~~~~~~I~r~~~dGs~~~~l~~----------------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~  202 (266)
T d1ijqa1         139 WGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  202 (266)
T ss_dssp             CSSSCEEEEEETTSCCEEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             cCCCcceeEeccCCCceecccc----------------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEE
Confidence            874 5899999988  333321                12567899986556789999999999999999998665432 


Q ss_pred             ---CCCCccceEEEEeccce
Q 013321          175 ---YDDTFHLGIFVLVAAAF  191 (445)
Q Consensus       175 ---~~~g~P~gIav~~~a~~  191 (445)
                         .....|.++++..+..+
T Consensus       203 ~~~~~~~~p~~lav~~~~ly  222 (266)
T d1ijqa1         203 EDEKRLAHPFSLAVFEDKVF  222 (266)
T ss_dssp             ECTTTTSSEEEEEEETTEEE
T ss_pred             eCCCcccccEEEEEECCEEE
Confidence               22345778888754333

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.18  E-value=3.6e-10  Score=108.82  Aligned_cols=138  Identities=17%  Similarity=0.188  Sum_probs=98.9

Q ss_pred             CCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEE-EecCCCCcccCCCCCccCccCCCcceEEEcCCCCEE
Q 013321           17 SKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY   95 (445)
Q Consensus        17 s~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~-vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LY   95 (445)
                      +..+...+|+++|++|+||++|..+++|+|+++++   +.... ++..                ...|.||+++++|+||
T Consensus        36 ~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g---~~~~~~~~~~----------------~~~p~gla~~~dG~l~   96 (319)
T d2dg1a1          36 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET---KEIKRPFVSH----------------KANPAAIKIHKDGRLF   96 (319)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECS----------------SSSEEEEEECTTSCEE
T ss_pred             ccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCC---CeEEEEEeCC----------------CCCeeEEEECCCCCEE
Confidence            34456679999999999999999999999999984   22222 2221                2268999999999999


Q ss_pred             EEeCC----CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC------CeEEE
Q 013321           96 IADTM----NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN------QAIRE  163 (445)
Q Consensus        96 VAD~~----N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn------~rIr~  163 (445)
                      ||+..    ..+|..++..+  +..+...              ......|++++ ++++|+|||.|..+      +.|++
T Consensus        97 va~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------~~~~~~~nd~~-~d~~G~l~vtd~~~~~~~~~g~v~~  161 (319)
T d2dg1a1          97 VCYLGDFKSTGGIFAATENGDNLQDIIED--------------LSTAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYY  161 (319)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECS--------------SSSCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred             EEecCCCccceeEEEEcCCCceeeeeccC--------------CCcccCCccee-EEeccceeecccccccccCcceeEE
Confidence            99865    45788888766  3333221              11245688886 69999999999754      45899


Q ss_pred             EECCCCceee-cCCCCccceEEEEec
Q 013321          164 IQLHDDDCSD-NYDDTFHLGIFVLVA  188 (445)
Q Consensus       164 i~l~~~~~~~-~~~~g~P~gIav~~~  188 (445)
                      +++++..... ......|.||++...
T Consensus       162 ~~~dg~~~~~~~~~~~~pnGia~s~d  187 (319)
T d2dg1a1         162 VSPDFRTVTPIIQNISVANGIALSTD  187 (319)
T ss_dssp             ECTTSCCEEEEEEEESSEEEEEECTT
T ss_pred             EecccceeEEEeeccceeeeeeeccc
Confidence            9887754432 334456788887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.16  E-value=3.1e-10  Score=107.57  Aligned_cols=116  Identities=20%  Similarity=0.163  Sum_probs=90.4

Q ss_pred             CCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           19 FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        19 ~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      .+.+|.+||+++||+|||+|..+++|++++++    |....++..+                ..|.+|+++++|+|||++
T Consensus        26 ~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~----g~~~~~~~~~----------------~~~~gla~~~dG~l~v~~   85 (302)
T d2p4oa1          26 VNTFLENLASAPDGTIFVTNHEVGEIVSITPD----GNQQIHATVE----------------GKVSGLAFTSNGDLVATG   85 (302)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEEECS----------------SEEEEEEECTTSCEEEEE
T ss_pred             CCCCcCCEEECCCCCEEEEeCCCCEEEEEeCC----CCEEEEEcCC----------------CCcceEEEcCCCCeEEEe
Confidence            34579999999999999999999999999998    4555554331                268899999999999999


Q ss_pred             CCCCEEEEEcC---CC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321           99 TMNMAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus        99 ~~N~rIrkfd~---dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      ..++.|.+++.   .+ ...+...               .....|++++ ++++|++||+|..+.+|+++++.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~n~i~-~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          86 WNADSIPVVSLVKSDGTVETLLTL---------------PDAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEEC---------------TTCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cCCceEEEEEecccccceeecccc---------------CCccccceeE-EccCCCEEeeccccccceeeeccCCc
Confidence            98888877763   23 2333221               1124578886 79999999999999999999987754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.3e-09  Score=103.16  Aligned_cols=142  Identities=15%  Similarity=0.189  Sum_probs=101.5

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEeCCC--CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCC
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSEN--SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH   82 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdp-dG~LYVaDs~n--~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~   82 (445)
                      +|...+++....  ...|.+|++|| .|.||+++.+.  .+|.+.+++|.   ....++..               .+..
T Consensus       109 dg~~~~~l~~~~--l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---~~~~i~~~---------------~~~~  168 (263)
T d1npea_         109 DGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---NRRILAQD---------------NLGL  168 (263)
T ss_dssp             TSCSCEEEECSS--CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---CCEEEECT---------------TCSC
T ss_pred             CCceEEEEeccc--ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---Cceeeeee---------------cccc
Confidence            344444554322  25799999998 78899999754  57999999853   22333321               2668


Q ss_pred             cceEEEcCC-CCEEEEeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCC
Q 013321           83 PKGLAVDDR-GNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  159 (445)
Q Consensus        83 P~GIavD~d-G~LYVAD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~  159 (445)
                      |.|||+|.. +.||++|...++|.+++.+|  ..++.-                 .+..|++|++ + ++.||++|.+++
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-----------------~~~~P~~lav-~-~~~lYwtd~~~~  229 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-----------------GLQYPFAVTS-Y-GKNLYYTDWKTN  229 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-----------------CCCSEEEEEE-E-TTEEEEEETTTT
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-----------------CCCCcEEEEE-E-CCEEEEEECCCC
Confidence            999999974 55999999999999999988  333321                 1346888874 4 689999999999


Q ss_pred             eEEEEECCCCcee-ec--CCCCccceEEEE
Q 013321          160 AIREIQLHDDDCS-DN--YDDTFHLGIFVL  186 (445)
Q Consensus       160 rIr~i~l~~~~~~-~~--~~~g~P~gIav~  186 (445)
                      +|.++++.+.... ..  .....|.||++.
T Consensus       230 ~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         230 SVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             EEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             EEEEEECCCCccceEECCCCCCCcceEEEe
Confidence            9999999764432 22  344578888875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.2e-09  Score=101.47  Aligned_cols=133  Identities=18%  Similarity=0.196  Sum_probs=97.2

Q ss_pred             CCCceEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCC-CCEEE
Q 013321           20 GMEPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYI   96 (445)
Q Consensus        20 g~~P~gIAVdp-dG~LYVaDs~n-~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G~LYV   96 (445)
                      ...|.+|++++ +|.||++|.+. .+|.+.+++|+   ....++..               .+..|.||++|.. +.||+
T Consensus       119 ~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~~l~~~---------------~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTE---------------NIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECS---------------SCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---ceeccccc---------------ccceeeEEEeeccccEEEE
Confidence            35799999998 78999999754 68999999853   23334322               2678999999974 45999


Q ss_pred             EeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc-eee
Q 013321           97 ADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD-CSD  173 (445)
Q Consensus        97 AD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~-~~~  173 (445)
                      +|..+++|.+++.+|  ..++..+              ...+..|.+|++ + ++.||++|..+++|.++++.+.. ...
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~--------------~~~~~~p~~lav-~-~~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEEC--------------TTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeC--------------CCcccccEEEEE-E-CCEEEEEECCCCeEEEEECCCCcceEE
Confidence            999999999999887  3443221              112557899874 4 57999999999999999976532 222


Q ss_pred             -cCCCCccceEEEE
Q 013321          174 -NYDDTFHLGIFVL  186 (445)
Q Consensus       174 -~~~~g~P~gIav~  186 (445)
                       ......|.+|.+.
T Consensus       245 ~~~~~~~p~~i~v~  258 (266)
T d1ijqa1         245 LAENLLSPEDMVLF  258 (266)
T ss_dssp             EECSCSCCCCEEEE
T ss_pred             EEcCCCCceEEEEE
Confidence             3344567776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.01  E-value=5e-09  Score=99.11  Aligned_cols=147  Identities=14%  Similarity=0.065  Sum_probs=102.6

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ..|.+|+++++|+|||++..++.|.+++..+.. +....++..+              ....|++++++++|++||+|..
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~n~i~~~~~g~~~v~~~~  132 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTLP--------------DAIFLNGITPLSDTQYLTADSY  132 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEECT--------------TCSCEEEEEESSSSEEEEEETT
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccc-cceeeccccC--------------CccccceeEEccCCCEEeeccc
Confidence            579999999999999999988888888765322 4555555432              2446899999999999999999


Q ss_pred             CCEEEEEcCCC-cEEE-ecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeec----
Q 013321          101 NMAIRKISDTG-VTTI-AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----  174 (445)
Q Consensus       101 N~rIrkfd~dG-v~ti-aGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~----  174 (445)
                      +.+|.+++..+ ...+ .......      .......+..+.+|..  ..+.||++++.+++|++++.........    
T Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  204 (302)
T d2p4oa1         133 RGAIWLIDVVQPSGSIWLEHPMLA------RSNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF  204 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGS------CSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE
T ss_pred             cccceeeeccCCcceeEecCCccc------eeeccCcccccccccc--cCCceeeecCCCCeEEeccccccccccccccc
Confidence            99999999765 3222 2111111      1112234557778764  3578999999999999999876443221    


Q ss_pred             CCCCccceEEEEeccc
Q 013321          175 YDDTFHLGIFVLVAAA  190 (445)
Q Consensus       175 ~~~g~P~gIav~~~a~  190 (445)
                      .....|.++++...+.
T Consensus       205 ~~~~~pdgia~d~dG~  220 (302)
T d2p4oa1         205 VEQTNIDDFAFDVEGN  220 (302)
T ss_dssp             EESCCCSSEEEBTTCC
T ss_pred             cCCCCCcceEECCCCC
Confidence            2245677888876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.76  E-value=1e-07  Score=90.62  Aligned_cols=139  Identities=14%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             CcEEEEEecCC--CCCCCceEEEEcCCCcEEEEeCC------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCc
Q 013321            7 GYTVETVFEGS--KFGMEPFSVAVSPSGELLVLDSE------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGA   78 (445)
Q Consensus         7 G~~v~tv~~Gs--~~g~~P~gIAVdpdG~LYVaDs~------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a   78 (445)
                      +..++.+.+-.  .....|+++++|++|+||+++..      .+.++++..     |+++.+..                
T Consensus        87 tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-----g~~~~~~~----------------  145 (295)
T d2ghsa1          87 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-----GKVTKLFA----------------  145 (295)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-----TEEEEEEE----------------
T ss_pred             cceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC-----CcEEEEee----------------
Confidence            34445554422  22357999999999999999853      245666653     44444432                


Q ss_pred             cCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC
Q 013321           79 RMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG  157 (445)
Q Consensus        79 ~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g  157 (445)
                      .+..|+|++++++++ |||+|+.+++|.+++-+.......+...   -..+.   ......|.+++ +|.+|+|||+..+
T Consensus       146 ~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~---~~~~~---~~~~g~pdG~~-vD~~GnlWva~~~  218 (295)
T d2ghsa1         146 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE---VFIDS---TGIKGGMDGSV-CDAEGHIWNARWG  218 (295)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE---EEEEC---TTSSSEEEEEE-ECTTSCEEEEEET
T ss_pred             ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceE---EEecc---CcccccccceE-EcCCCCEEeeeeC
Confidence            266899999999887 9999999999999975431110000000   00000   00123577775 7999999999999


Q ss_pred             CCeEEEEECCCCceee
Q 013321          158 NQAIREIQLHDDDCSD  173 (445)
Q Consensus       158 n~rIr~i~l~~~~~~~  173 (445)
                      +++|.+|++++.....
T Consensus       219 ~g~V~~~dp~G~~~~~  234 (295)
T d2ghsa1         219 EGAVDRYDTDGNHIAR  234 (295)
T ss_dssp             TTEEEEECTTCCEEEE
T ss_pred             CCceEEecCCCcEeeE
Confidence            9999999998865544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.68  E-value=2.1e-07  Score=88.39  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=82.3

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCC---CCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEE
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSP---YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI   96 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~---~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYV   96 (445)
                      ..|+|+++++++. +|++|+.+++|++++.+...   .++...++... +            ....|.|+++|.+|+|||
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~-~------------~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-G------------IKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-T------------SSSEEEEEEECTTSCEEE
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC-c------------ccccccceEEcCCCCEEe
Confidence            4599999999776 99999999999999876321   12222222111 1            123699999999999999


Q ss_pred             EeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCC-CeEEEEECC-------------CCeEE
Q 013321           97 ADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS-CSLLVIDRG-------------NQAIR  162 (445)
Q Consensus        97 AD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~d-G~LyVaD~g-------------n~rIr  162 (445)
                      |....++|.+||++|..+....          .|     ...|+++++-.++ ..|||+...             .+.|+
T Consensus       215 a~~~~g~V~~~dp~G~~~~~i~----------lP-----~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~  279 (295)
T d2ghsa1         215 ARWGEGAVDRYDTDGNHIARYE----------VP-----GKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTF  279 (295)
T ss_dssp             EEETTTEEEEECTTCCEEEEEE----------CS-----CSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEE
T ss_pred             eeeCCCceEEecCCCcEeeEec----------CC-----CCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEE
Confidence            9999999999999994332110          01     1257777766555 479998653             35777


Q ss_pred             EEECC
Q 013321          163 EIQLH  167 (445)
Q Consensus       163 ~i~l~  167 (445)
                      ++.+.
T Consensus       280 ~~~~~  284 (295)
T d2ghsa1         280 ELGIE  284 (295)
T ss_dssp             ECSSC
T ss_pred             EEcCC
Confidence            77643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.02  E-value=7e-05  Score=72.24  Aligned_cols=153  Identities=13%  Similarity=0.096  Sum_probs=90.0

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      .+|++++++|+|. |||+|.+.++|++++.+.  .|....+.......           .-..|.+|+++++|. +||+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~--~g~~~~~~~~~~~~-----------~g~gPr~i~f~pdg~~~yv~~  211 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLA--SGEVELVGSVDAPD-----------PGDHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSCEEEEEEEECSS-----------TTCCEEEEEECTTSSEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccC--CCceeeccceeecC-----------CCCceEEEEECCCCceEEEec
Confidence            4789999999997 999999999998886432  13333222111000           124799999999998 89999


Q ss_pred             CCCCEEEEEcCCC---cEEEecCccc-CCCCC-CCCCccCcccCCCceEEEECCCC-eEEEEECCCCe-----EEEEECC
Q 013321           99 TMNMAIRKISDTG---VTTIAGGKWS-RGVGH-VDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQA-----IREIQLH  167 (445)
Q Consensus        99 ~~N~rIrkfd~dG---v~tiaGg~~G-~g~G~-~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~r-----Ir~i~l~  167 (445)
                      ...+.|.+|+.+.   ..+....... ...+. ............+..|. ++++| .|||+.++.+.     |..+..+
T Consensus       212 e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~spdG~~lyvsnr~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         212 EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA-LTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE-ECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             cCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceE-ECCCCCEEEEEcccCCCccceEEEEEEec
Confidence            9999999887432   2111111000 00000 01112222344566776 56776 68999876544     7666655


Q ss_pred             CCcee------e--cCCCCccceEEEEe
Q 013321          168 DDDCS------D--NYDDTFHLGIFVLV  187 (445)
Q Consensus       168 ~~~~~------~--~~~~g~P~gIav~~  187 (445)
                      .....      .  ......|.++++..
T Consensus       291 ~~g~~~~~~~~~~~~~~G~~p~~i~~~p  318 (365)
T d1jofa_         291 DCGSIEKQLFLSPTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             TTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred             CCCceeeEeEeeEEEcCCCCccEEEecC
Confidence            42211      1  12345677787753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.84  E-value=0.00073  Score=59.52  Aligned_cols=116  Identities=19%  Similarity=0.353  Sum_probs=76.2

Q ss_pred             CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      +..|.+|+++|||. |||++..+++|.+++...   ++.......                ...|.+++++++|. ++++
T Consensus        31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t---~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~   91 (301)
T d1l0qa2          31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPA----------------GSSPQGVAVSPDGKQVYVT   91 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEEC----------------SSSEEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---Cceeeeeec----------------ccccccccccccccccccc
Confidence            35799999999987 889999999999999863   333222111                23588999999887 7888


Q ss_pred             eCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc
Q 013321           98 DTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD  170 (445)
Q Consensus        98 D~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~  170 (445)
                      ......+..++......+....               ....|..+. ..+++ .++++...+..+..++.....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~dg~~~~~~~~~~~~~~~~~~~~~~  149 (301)
T d1l0qa2          92 NMASSTLSVIDTTSNTVAGTVK---------------TGKSPLGLA-LSPDGKKLYVTNNGDKTVSVINTVTKA  149 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEE---------------CSSSEEEEE-ECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccceeeecccccceeeeecc---------------ccccceEEE-eecCCCeeeeeeccccceeeeeccccc
Confidence            8888889988865422211100               011344444 34444 556666667777777765543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=0.00011  Score=66.31  Aligned_cols=118  Identities=11%  Similarity=0.070  Sum_probs=77.8

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      ..|.+|+++|||. |||+...+++|..++.+..  +....+.+..             ..-..|.+|++++||+ |||++
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--~~~~~~~~~~-------------~~~~~p~~l~~spDg~~l~v~~  101 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--DGALTFAAES-------------ALPGSLTHISTDHQGQFVFVGS  101 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEE-------------ECSSCCSEEEECTTSSEEEEEE
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC--CCcEEEeeec-------------ccCCCceEEEEcCCCCEEeecc
Confidence            5789999999997 8899988888887765421  1122222110             0123689999999998 99999


Q ss_pred             CCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321           99 TMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        99 ~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~  168 (445)
                      ..+..|..++.+.  ........              ..-..|+++. +++++ .+++++.....|..++...
T Consensus       102 ~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~-~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         102 YNAGNVSVTRLEDGLPVGVVDVV--------------EGLDGCHSAN-ISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEEE--------------CCCTTBCCCE-ECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCCceeeeccccccceeccccc--------------CCCccceEEE-eeecceeeeccccccceeeEEEecc
Confidence            9888888887443  11111100              0112455665 45555 6889999999999888654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.75  E-value=0.00045  Score=60.95  Aligned_cols=102  Identities=17%  Similarity=0.268  Sum_probs=71.3

Q ss_pred             cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 013321           33 ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG  111 (445)
Q Consensus        33 ~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~dG  111 (445)
                      -+||++..++.|.++|...   +++...+..                -..|.+|+++++|. |||++..+++|+++|...
T Consensus         3 ~~yV~~~~~~~v~v~D~~t---~~~~~~i~~----------------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t   63 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTS---NKVTATIPV----------------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT   63 (301)
T ss_dssp             EEEEEETTTTEEEEEETTT---TEEEEEEEC----------------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEECCC---CeEEEEEEC----------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            3799999999999999763   443332221                02689999999998 899999999999999654


Q ss_pred             ---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          112 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       112 ---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                         +.++..+                  ..|.++.+......++++...+..+..++.....+
T Consensus        64 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (301)
T d1l0qa2          64 NNVIATVPAG------------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (301)
T ss_dssp             TEEEEEEECS------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             Cceeeeeecc------------------ccccccccccccccccccccccceeeeccccccee
Confidence               2333211                  24566664444446788888888888888776543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.61  E-value=0.00034  Score=67.72  Aligned_cols=136  Identities=13%  Similarity=0.090  Sum_probs=86.3

Q ss_pred             CCceEEEE--cCCCc--EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCE
Q 013321           21 MEPFSVAV--SPSGE--LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNI   94 (445)
Q Consensus        21 ~~P~gIAV--dpdG~--LYVaDs--~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~L   94 (445)
                      ..|+||.+  +.+|.  |||++.  .+.+|-.++.+..  +...+..+.           .....+..|++|++..+|.+
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~--~~~l~~~~~-----------v~~~~~~~pNDv~~~~~g~f  163 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEE--EKSLLHLKT-----------IRHKLLPSVNDIVAVGPEHF  163 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETT--TTEEEEEEE-----------ECCTTCSSEEEEEEEETTEE
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCC--CCeEEEEee-----------cCCccccCccceEEecCCCE
Confidence            57999987  44664  788775  4566655544311  111222221           11225788999999999999


Q ss_pred             EEEeCC-----------------CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCC-CeEEEEEC
Q 013321           95 YIADTM-----------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS-CSLLVIDR  156 (445)
Q Consensus        95 YVAD~~-----------------N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~d-G~LyVaD~  156 (445)
                      |+++-.                 ...|..+|.....+++                 ..+..|+||+. +++ ..|||+++
T Consensus       164 y~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~-----------------~~l~~pNGI~~-s~d~~~lyVa~t  225 (340)
T d1v04a_         164 YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-----------------EGFDFANGINI-SPDGKYVYIAEL  225 (340)
T ss_dssp             EEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE-----------------EEESSEEEEEE-CTTSSEEEEEEG
T ss_pred             EEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc-----------------CCCCccceeEE-CCCCCEEEEEeC
Confidence            999631                 2234455544333332                 13568999975 555 58999999


Q ss_pred             CCCeEEEEECCCCceee----cCCCCccceEEEEe
Q 013321          157 GNQAIREIQLHDDDCSD----NYDDTFHLGIFVLV  187 (445)
Q Consensus       157 gn~rIr~i~l~~~~~~~----~~~~g~P~gIav~~  187 (445)
                      ..++|+++.+.+.....    ..-.+.|.+|.++.
T Consensus       226 ~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         226 LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             CCCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence            99999999987643221    23456788888864

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.44  E-value=0.00023  Score=68.86  Aligned_cols=71  Identities=14%  Similarity=0.207  Sum_probs=52.6

Q ss_pred             CCCceEEEEcCCCcEEEEeCC-----------------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCC
Q 013321           20 GMEPFSVAVSPSGELLVLDSE-----------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH   82 (445)
Q Consensus        20 g~~P~gIAVdpdG~LYVaDs~-----------------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~   82 (445)
                      ...|++|++..+|.+|+++.-                 .+.|+.++.     +....++.                .|..
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-----~~~~~~~~----------------~l~~  207 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-----NDVRVVAE----------------GFDF  207 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-----SCEEEEEE----------------EESS
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-----CceEEEcC----------------CCCc
Confidence            367999999999999999631                 234555543     22333332                2778


Q ss_pred             cceEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 013321           83 PKGLAVDDRGN-IYIADTMNMAIRKISDTG  111 (445)
Q Consensus        83 P~GIavD~dG~-LYVAD~~N~rIrkfd~dG  111 (445)
                      |+||+++++++ ||||++...+|++|+.++
T Consensus       208 pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         208 ANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            99999999886 999999999999988443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.41  E-value=0.0014  Score=62.77  Aligned_cols=138  Identities=16%  Similarity=0.106  Sum_probs=81.4

Q ss_pred             CCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEec---CCCCcccCCCCCccCccCCCcceEEEcCCCC-
Q 013321           19 FGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAG---SPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-   93 (445)
Q Consensus        19 ~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG---~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-   93 (445)
                      .+..|.+|+++|+|. +||+....+.|..++.+......+..+..   ...+...  ...........|..|+++++|. 
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD--RDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC--BCTTTSSBSEEEEEEEECTTSSE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccc--cccccccccCCccceEECCCCCE
Confidence            357899999999987 89999999999988876432111111111   1111111  0011122345678999999998 


Q ss_pred             EEEEeCCCCE-----EEE--EcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEE
Q 013321           94 IYIADTMNMA-----IRK--ISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREI  164 (445)
Q Consensus        94 LYVAD~~N~r-----Irk--fd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i  164 (445)
                      |||+..++..     |..  ++.+| +........           ....-.+|.+|.+.+.+| .|||++...+.|..+
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-----------~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-----------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-----------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeE-----------EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            8999765322     444  44555 221111000           001123678887433355 599999999999998


Q ss_pred             ECCCC
Q 013321          165 QLHDD  169 (445)
Q Consensus       165 ~l~~~  169 (445)
                      ..+..
T Consensus       338 ~~~~~  342 (365)
T d1jofa_         338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            76654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.38  E-value=0.00046  Score=61.83  Aligned_cols=103  Identities=8%  Similarity=0.021  Sum_probs=68.8

Q ss_pred             EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCE
Q 013321           25 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMA  103 (445)
Q Consensus        25 gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~r  103 (445)
                      |+|++++|+.+++-..++.|..+|...   +++...+-.+.              -..|.+|++++||. |||++..+++
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t---~~~~~t~~~~~--------------~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMPD--------------KFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTT---TEEEEEEECSS--------------CCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCC---CCEEEEEEcCC--------------CCCcceEEECCCCCEEEEEECCCCc
Confidence            568889999888888888999999873   44433222110              12588999999998 8999999999


Q ss_pred             EEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEEC
Q 013321          104 IRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDR  156 (445)
Q Consensus       104 Irkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~  156 (445)
                      |..+|...   +.++....           ........|.++++ .++| .|||++.
T Consensus        64 v~~~d~~t~~~~~~~~~~~-----------~~~~~~~~~~~v~~-s~DG~~l~v~~~  108 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSS-----------VPGEVGRSMYSFAI-SPDGKEVYATVN  108 (346)
T ss_dssp             EEEEETTTTEEEEEEESCC-----------STTEEEECSSCEEE-CTTSSEEEEEEE
T ss_pred             EEEEeCccCeeeeeecccc-----------cccccCCceEEEEE-ecCCCEEEEEec
Confidence            99999554   22222111           11122346778864 5665 6788764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.36  E-value=0.0021  Score=64.11  Aligned_cols=80  Identities=19%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321            6 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG   85 (445)
Q Consensus         6 ~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G   85 (445)
                      .++.+++++++   ...|.+|++.|||+|||++...++|++++..+   +....+.+.+.-. ....|      -..-.|
T Consensus        15 ~~f~~~~ia~~---L~~P~~la~~pdg~llVter~~G~i~~v~~~~---g~~~~i~~~~~~~-~~~~g------e~GLLg   81 (450)
T d1crua_          15 ENFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIV-NDADG------QNGLLG   81 (450)
T ss_dssp             TTSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCC-CCTTS------SCSEEE
T ss_pred             CCcEEEEEECC---CCCceEEEEeCCCeEEEEEecCCEEEEEECCC---CcEeecccCCccc-cccCC------CCceee
Confidence            57889999875   35799999999999999998889999998763   5566666543211 00011      012348


Q ss_pred             EEEcCC----CCEEEEe
Q 013321           86 LAVDDR----GNIYIAD   98 (445)
Q Consensus        86 IavD~d----G~LYVAD   98 (445)
                      ||++++    +.|||+-
T Consensus        82 ia~~Pdf~~n~~iYvsy   98 (450)
T d1crua_          82 FAFHPDFKNNPYIYISG   98 (450)
T ss_dssp             EEECTTTTTSCEEEEEE
T ss_pred             EEeCCCCccCCEEEEEE
Confidence            999974    6799964

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.0025  Score=56.92  Aligned_cols=104  Identities=11%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             cEEEEeCCCCeEEEEeCCCCCCCccEEEe--cCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEEEEc-
Q 013321           33 ELLVLDSENSNIYKISTSLSPYSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS-  108 (445)
Q Consensus        33 ~LYVaDs~n~rI~kid~dg~~~G~v~~va--G~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd-  108 (445)
                      .+||+.+.++.|..++.+..  +.+..+.  ..                -..|.+|+++|||. |||+....++|+.++ 
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~--~~l~~~~~~~~----------------~~~v~~la~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHE--GALTLTQVVDV----------------PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTT--SCEEEEEEEEC----------------SSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCC--CCeEEEEEEcC----------------CCCEeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            48999999999999886531  3333322  21                12578999999998 899999888888766 


Q ss_pred             -CCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCC
Q 013321          109 -DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus       109 -~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~  169 (445)
                       .++ ..++....              ..-..|.+|+ ++++| .||+++.++..|+.+.....
T Consensus        67 ~~~~~~~~~~~~~--------------~~~~~p~~l~-~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          67 APDDGALTFAAES--------------ALPGSLTHIS-TDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             CTTTCCEEEEEEE--------------ECSSCCSEEE-ECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             eCCCCcEEEeeec--------------ccCCCceEEE-EcCCCCEEeecccCCCceeeeccccc
Confidence             333 33322111              0113577776 56666 68999998999988876553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.97  E-value=0.02  Score=50.42  Aligned_cols=70  Identities=17%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             CCCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-E
Q 013321           17 SKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I   94 (445)
Q Consensus        17 s~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L   94 (445)
                      ...+..|.+|+++|||. |||+...++.|.+++...   +++........+          ......|.++++.++|. +
T Consensus        30 ~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t---~~~~~~~~~~~~----------~~~~~~~~~v~~s~dg~~l   96 (337)
T d1pbyb_          30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLSTP----------EERVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECCBT----------TEEEECTTCEEECTTSSEE
T ss_pred             CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecCCC----------cccccceeeEEEcCCCcEE
Confidence            33445799999999997 789998899999999873   454433222100          11234678999999988 7


Q ss_pred             EEEeC
Q 013321           95 YIADT   99 (445)
Q Consensus        95 YVAD~   99 (445)
                      |++..
T Consensus        97 ~~~~~  101 (337)
T d1pbyb_          97 AIYES  101 (337)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            77754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.91  E-value=0.0078  Score=53.41  Aligned_cols=67  Identities=18%  Similarity=0.293  Sum_probs=47.6

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      ..|.+|+++|||. |||++..+++|..++...   ++..........         .......|.++++++||. |||++
T Consensus        40 ~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t---~~~~~~~~~~~~---------~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLSSV---------PGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             CSSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESCCS---------TTEEEECSSCEEECTTSSEEEEEE
T ss_pred             CCcceEEECCCCCEEEEEECCCCcEEEEeCcc---Ceeeeeeccccc---------ccccCCceEEEEEecCCCEEEEEe
Confidence            4699999999987 789999999999999873   443322211100         111245789999999998 88886


Q ss_pred             C
Q 013321           99 T   99 (445)
Q Consensus        99 ~   99 (445)
                      .
T Consensus       108 ~  108 (346)
T d1jmxb_         108 N  108 (346)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.62  E-value=0.044  Score=52.94  Aligned_cols=124  Identities=11%  Similarity=0.047  Sum_probs=73.4

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc----CCCC-E
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGN-I   94 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD----~dG~-L   94 (445)
                      ..|++|+++|||. ||++. ..+.|.+++.+.   ++...+...+              ....|.++++.    +||. |
T Consensus        62 ~~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~t---~~~~~~~~i~--------------~~~~~~~~~~s~~~SpDG~~l  123 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIG-RDGKVNMIDLWM---KEPTTVAEIK--------------IGSEARSIETSKMEGWEDKYA  123 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEE-TTSEEEEEETTS---SSCCEEEEEE--------------CCSEEEEEEECCSTTCTTTEE
T ss_pred             CCeeEEEECCCCCEEEEEc-CCCCEEEEEeeC---CCceEEEEEe--------------cCCCCCCeEEecccCCCCCEE
Confidence            4699999999998 66665 467899998763   2221111110              12356677665    5887 7


Q ss_pred             EEEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCC
Q 013321           95 YIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus        95 YVAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~  169 (445)
                      ||+....+.|+.+|...   +.++.+.....     +. ........+..|++ +.+| .++|+....+.|..++....
T Consensus       124 ~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~v~~-s~dg~~~~vs~~~~~~i~~~d~~~~  195 (432)
T d1qksa2         124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----DE-QEYHPEPRVAAILA-SHYRPEFIVNVKETGKILLVDYTDL  195 (432)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCEECT-----TT-CCEESCCCEEEEEE-CSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             EEEcCCCCeEEEEeCccccceeeeccCCccc-----cc-eeccCCCceeEEEE-CCCCCEEEEEEccCCeEEEEEccCC
Confidence            89999899999999554   33333221110     00 00001122334443 4444 56777788888888886553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.45  E-value=0.034  Score=48.84  Aligned_cols=96  Identities=10%  Similarity=0.018  Sum_probs=54.7

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC
Q 013321           81 NHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  156 (445)
Q Consensus        81 n~P~GIavD~dG~-LYVAD~~N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~  156 (445)
                      ..|.+|++++||. |||+...++.|.++|.. |  +..+....            .......+.++++.+....||++..
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~------------~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------PEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------TTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC------------CcccccceeeEEEcCCCcEEEEeec
Confidence            3688999999998 78999989999999954 4  22222110            1112235666664333345666653


Q ss_pred             -----------CCCeEEEEECCCCceee-cCCCCccceEEEEec
Q 013321          157 -----------GNQAIREIQLHDDDCSD-NYDDTFHLGIFVLVA  188 (445)
Q Consensus       157 -----------gn~rIr~i~l~~~~~~~-~~~~g~P~gIav~~~  188 (445)
                                 ...++..++.....+.. ......+.++++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d  145 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARD  145 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTT
T ss_pred             CCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCC
Confidence                       34566666665543322 222334555554433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.01  E-value=0.13  Score=48.45  Aligned_cols=123  Identities=11%  Similarity=0.060  Sum_probs=71.9

Q ss_pred             CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc----CCCC-E
Q 013321           21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGN-I   94 (445)
Q Consensus        21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD----~dG~-L   94 (445)
                      ..|++|+++|||. ||++. .++.|.+++.++   ++...++-..              ....|.+++++    +||. |
T Consensus        62 ~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t---~~~~~~~~i~--------------~~~~~~~~~~s~~~spDG~~l  123 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIG-RDARIDMIDLWA---KEPTKVAEIK--------------IGIEARSVESSKFKGYEDRYT  123 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEE-TTSEEEEEETTS---SSCEEEEEEE--------------CCSEEEEEEECCSTTCTTTEE
T ss_pred             CCeeEEEECCCCCEEEEEe-CCCCEEEEEccC---CceeEEEEEe--------------CCCCCcceEEeeeecCCCCEE
Confidence            4699999999998 55655 467899998874   3332222110              12245666665    5787 7


Q ss_pred             EEEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCccc-CCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321           95 YIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKF-SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        95 YVAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f-~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      |++....+.|+.+|...   +.++.+.....     ..  ..-.. ..+..++.......+++++.+++.|..+....
T Consensus       124 ~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~  194 (426)
T d1hzua2         124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-----DT--QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  194 (426)
T ss_dssp             EEEEEESSEEEEEETTTCCEEEEEECCEECS-----SS--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred             EEeecCCCeEEEEcCCccceeEEeeccCCCc-----cc--eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence            89988889999998554   23332221110     00  00000 11233443344447788888888888887654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.55  E-value=0.14  Score=50.30  Aligned_cols=70  Identities=14%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             ceEEEEcCCCcEEEEeCC--------------------------------CCeEEEEeCCCCCCCccEEEecCCCCcccC
Q 013321           23 PFSVAVSPSGELLVLDSE--------------------------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGH   70 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~--------------------------------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~   70 (445)
                      =..|++++||.|||+-..                                .+.|+|++.+++...      ..+. ..+ 
T Consensus       146 gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~------dnP~-~~~-  217 (450)
T d1crua_         146 SGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPK------DNPS-FNG-  217 (450)
T ss_dssp             EEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCT------TCCE-ETT-
T ss_pred             ccceeEcCCCCEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccc------cccc-ccc-
Confidence            358999999999998432                                267888888754310      0110 000 


Q ss_pred             CCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           71 VDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        71 ~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .....-..-+++|.|++++++|.||++|.+
T Consensus       218 ~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         218 VVSHIYTLGHRNPQGLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             EECSEEEBCCSEEEEEEECTTSCEEEEEEC
T ss_pred             ccceEEEeccccccceeecccceeeecccc
Confidence            001112234899999999999999999976

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=95.23  E-value=0.37  Score=43.24  Aligned_cols=117  Identities=9%  Similarity=-0.027  Sum_probs=62.2

Q ss_pred             eEEEEcCCCc-EEEEeCC---------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321           24 FSVAVSPSGE-LLVLDSE---------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN   93 (445)
Q Consensus        24 ~gIAVdpdG~-LYVaDs~---------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~   93 (445)
                      .+++++|||. ||++...         .+.|..++..+   +++......+.        .....-...|.++++.++|.
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t---~~~~~~~~~~~--------~~~~~~~~~~~~~~~s~dg~  137 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---FLPIADIELPD--------APRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCC---CcEEEEEecCC--------cceeEeccCCCcEEEEeCCC
Confidence            3799999987 6777543         35577777653   33332222211        11112345788899998877


Q ss_pred             -EEEEeCC-CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321           94 -IYIADTM-NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  169 (445)
Q Consensus        94 -LYVAD~~-N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~  169 (445)
                       ++|+... .+.+..++........                  ....|.++.+......+|++....+.+..++....
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSSDDQ------------------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCeEEE------------------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence             6666543 3445555543322111                  11234444433333356666666677766665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.07  E-value=0.064  Score=53.31  Aligned_cols=66  Identities=17%  Similarity=0.323  Sum_probs=48.9

Q ss_pred             CceEEEEc--CCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321           22 EPFSVAVS--PSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA   97 (445)
Q Consensus        22 ~P~gIAVd--pdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA   97 (445)
                      .|+...++  +||. |||+|..++||.+++.+.   +++..+...+.              ...|+|+++.++|+ +||+
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t---~k~~~ii~iP~--------------g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDI---MKTDKITHIPN--------------VQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTT---TEEEEEEECTT--------------CCCEEEEEECCSSBCCEEE
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCC---CcEeeEEecCC--------------CCCccceEEeccCCEEEEE
Confidence            57666665  5786 999999999999999873   44544443331              34799999999998 7998


Q ss_pred             eCCCCEE
Q 013321           98 DTMNMAI  104 (445)
Q Consensus        98 D~~N~rI  104 (445)
                      ....+.+
T Consensus       134 ~~~~~~v  140 (441)
T d1qnia2         134 CNAEFVI  140 (441)
T ss_dssp             EEECSCE
T ss_pred             eccCCcc
Confidence            7665555

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.05  E-value=0.26  Score=45.03  Aligned_cols=49  Identities=8%  Similarity=-0.025  Sum_probs=34.3

Q ss_pred             CCceEEEECCCCe--EEEEECCCCeEEEEECCCCcee-ecCCCCccceEEEEe
Q 013321          138 NDFDVVYVGSSCS--LLVIDRGNQAIREIQLHDDDCS-DNYDDTFHLGIFVLV  187 (445)
Q Consensus       138 ~P~gI~~vd~dG~--LyVaD~gn~rIr~i~l~~~~~~-~~~~~g~P~gIav~~  187 (445)
                      .|.+++ +.++|.  ||++..+.+.|+.++....... .......|.+|++..
T Consensus       315 ~~~~~a-~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~~  366 (368)
T d1mdah_         315 DSDAII-AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EECEEE-ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred             ceeEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEEec
Confidence            456665 567763  7899999999999998765544 344444688887643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.90  E-value=0.31  Score=43.19  Aligned_cols=118  Identities=17%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             ceEE-EEcCCCc-EEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EE
Q 013321           23 PFSV-AVSPSGE-LLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY   95 (445)
Q Consensus        23 P~gI-AVdpdG~-LYVaDs~----n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY   95 (445)
                      |..+ |..|||. +||++..    .+.|+.++...   |++....-.     |           ..| ++++.+||. ||
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~t---g~~~~~~~~-----g-----------~~~-~~a~SpDg~~l~   62 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA---GRVIGMIDG-----G-----------FLP-NPVVADDGSFIA   62 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTT---TEEEEEEEE-----C-----------SSC-EEEECTTSSCEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCC---CcEEEEEEC-----C-----------CCC-ceEEcCCCCEEE
Confidence            4444 4457776 8898853    34699998763   443222111     1           023 799999998 99


Q ss_pred             EEeCC---------CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-CCeEE
Q 013321           96 IADTM---------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIR  162 (445)
Q Consensus        96 VAD~~---------N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g-n~rIr  162 (445)
                      |++..         .+.|+++|...   +.++.....          ........|..+++......++|++.. ...+.
T Consensus        63 v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~  132 (355)
T d2bbkh_          63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA----------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG  132 (355)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC----------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEE
T ss_pred             EEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc----------ceeecCCCCceEEEecCCCeeEEecCCCCceee
Confidence            98752         45799999654   233322110          011123467777755544578888754 45666


Q ss_pred             EEECCCCc
Q 013321          163 EIQLHDDD  170 (445)
Q Consensus       163 ~i~l~~~~  170 (445)
                      .++.....
T Consensus       133 ~~~~~~~~  140 (355)
T d2bbkh_         133 VVDLEGKA  140 (355)
T ss_dssp             EEETTTTE
T ss_pred             eeecCCCc
Confidence            66665543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.86  E-value=0.074  Score=48.98  Aligned_cols=76  Identities=9%  Similarity=-0.049  Sum_probs=51.4

Q ss_pred             EEEEcCCCc-EEEEeCC---------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-
Q 013321           25 SVAVSPSGE-LLVLDSE---------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-   93 (445)
Q Consensus        25 gIAVdpdG~-LYVaDs~---------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-   93 (445)
                      ++++.+||. ||++...         .+.|..+|..+   +++...+..+.+...        .....|.+|++.+||. 
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t---~~~~~~i~~p~~~~~--------~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT---FLPIADIELPDAPRF--------SVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT---CCEEEEEEETTSCSC--------CBSCCTTSEEECTTSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCC---CcEeeeecCCcccee--------cccCCccceEECCCCCE
Confidence            789999986 8887632         34588888763   444333322211110        1234688999999997 


Q ss_pred             EEEEeCCCCEEEEEcCCC
Q 013321           94 IYIADTMNMAIRKISDTG  111 (445)
Q Consensus        94 LYVAD~~N~rIrkfd~dG  111 (445)
                      |||++...+.|..+|...
T Consensus       138 l~va~~~~~~v~~~d~~~  155 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             EEEEECSSSCEEEEEETT
T ss_pred             EEEEeCCCCeEEEEECCC
Confidence            999998888999999554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.32  E-value=0.63  Score=41.07  Aligned_cols=123  Identities=9%  Similarity=-0.053  Sum_probs=67.6

Q ss_pred             EEEEcCCCc-EEEEeCC---------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-
Q 013321           25 SVAVSPSGE-LLVLDSE---------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-   93 (445)
Q Consensus        25 gIAVdpdG~-LYVaDs~---------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-   93 (445)
                      +++++|||. |||++..         .+.|.+++..+   +++......+...        .......|.++++.++|. 
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t---~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~dg~~  119 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---LLPTADIELPDAP--------RFLVGTYPWMTSLTPDGKT  119 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCC--------CCCBSCCGGGEEECTTSSE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC---CCEEEEEecCCcc--------eeecCCCCceEEEecCCCe
Confidence            799999987 8887642         36788888763   4443322111111        011245799999999988 


Q ss_pred             EEEEeCC-CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321           94 IYIADTM-NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        94 LYVAD~~-N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      ++|++.. ...+..++...   +.++.....          ........+..+++......+++.......+..++...
T Consensus       120 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             EEEEECSSSCEEEEEETTTTEEEEEEECCSE----------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             eEEecCCCCceeeeeecCCCcEeeEEecCCc----------ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            8888865 45666677543   233322110          00001112233443333345666666666666666443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.03  E-value=0.54  Score=44.83  Aligned_cols=126  Identities=11%  Similarity=0.024  Sum_probs=79.7

Q ss_pred             CCceEEEEcC----CCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-E
Q 013321           21 MEPFSVAVSP----SGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I   94 (445)
Q Consensus        21 ~~P~gIAVdp----dG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L   94 (445)
                      ..|.++++++    ||. ||++...++.|..++..+   +++....-.. +...  +. .....-..+.+|+++++|. +
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t---~~~~~~~~~~-~~~~--~~-~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTR-GMTY--DE-QEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECC-EECT--TT-CCEESCCCEEEEEECSSSSEE
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc---ccceeeeccC-Cccc--cc-eeccCCCceeEEEECCCCCEE
Confidence            4688888764    787 789998899999999763   4443332211 0000  00 0001122456788898887 6


Q ss_pred             EEEeCCCCEEEEEcCCC-----cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCC
Q 013321           95 YIADTMNMAIRKISDTG-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHD  168 (445)
Q Consensus        95 YVAD~~N~rIrkfd~dG-----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~-LyVaD~gn~rIr~i~l~~  168 (445)
                      +|+-...+.|..++...     +.++..+                  ..|.+++ .+++|+ ++++....+.|..++...
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~~~~~~i~~g------------------~~~~~~~-~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNNLKTTEISAE------------------RFLHDGG-LDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEEECC------------------SSEEEEE-ECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEccCCeEEEEEccCCCcceEEEEccc------------------Cccccce-ECCCCCEEEEeccccceEEEeeccc
Confidence            78888889999998533     1222111                  1366776 577774 889988899999999876


Q ss_pred             Ccee
Q 013321          169 DDCS  172 (445)
Q Consensus       169 ~~~~  172 (445)
                      ....
T Consensus       239 ~~~~  242 (432)
T d1qksa2         239 GKLV  242 (432)
T ss_dssp             TEEE
T ss_pred             ceEE
Confidence            5443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.94  E-value=0.45  Score=46.93  Aligned_cols=31  Identities=6%  Similarity=0.115  Sum_probs=25.4

Q ss_pred             CCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321          137 SNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       137 ~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~  168 (445)
                      ..|+++. ++++| .|||+....+.|..|+...
T Consensus       258 ksPhGv~-vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         258 KNPHGLN-TSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             SSCCCEE-ECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCccCce-ECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            4699997 57777 5889999999999999754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=1.2  Score=39.60  Aligned_cols=109  Identities=14%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ....|+++++++++++-..++.|..++...   +......+.                -..-.+|++.++|.++++=...
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~----------------~~~i~~v~~s~~g~~l~s~s~D  286 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNK---PDKYQLHLH----------------ESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTS---SCEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEEcccccccceeccccccccccccc---ccccccccc----------------ccccceEEECCCCCEEEEEeCC
Confidence            456677777777666655666777776652   222211111                1134588999999977765567


Q ss_pred             CEEEEEcCC-CcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 013321          102 MAIRKISDT-GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  166 (445)
Q Consensus       102 ~rIrkfd~d-Gv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l  166 (445)
                      +.|+.+|.. +..+...+.                -....++. ..+++.++++-..++.|+..++
T Consensus       287 g~i~iwd~~~~~~~~~~~~----------------~~~v~~~~-~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         287 NLLNAWRTPYGASIFQSKE----------------SSSVLSCD-ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTTCCEEEEEEC----------------SSCEEEEE-ECTTSCEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEccC----------------CCCEEEEE-EeCCCCEEEEEeCCCeEEEEEE
Confidence            889999843 432221110                01223444 5677777776666777777653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.16  E-value=1.2  Score=38.20  Aligned_cols=72  Identities=7%  Similarity=0.116  Sum_probs=45.8

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ...+|+++|+|.++++-..++.|..++...   ..........             .....-..++++++|.++++=..+
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~---~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRA---DQELMTYSHD-------------NIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCT-------------TCCSCEEEEEECSSSCEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeecc---cccccccccc-------------cccCceEEEEECCCCCEEEEEECC
Confidence            357788888888777777777888777652   2221111110             011123578889999877766667


Q ss_pred             CEEEEEcC
Q 013321          102 MAIRKISD  109 (445)
Q Consensus       102 ~rIrkfd~  109 (445)
                      +.|+.+|.
T Consensus       292 g~i~iwd~  299 (340)
T d1tbga_         292 FNCNVWDA  299 (340)
T ss_dssp             SCEEEEET
T ss_pred             CEEEEEEC
Confidence            78998884

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=91.50  E-value=4.2  Score=35.78  Aligned_cols=49  Identities=10%  Similarity=0.092  Sum_probs=33.8

Q ss_pred             CCceEEEECCCCe--EEEEECCCCeEEEEECCCCcee-ecCC-CCccceEEEEe
Q 013321          138 NDFDVVYVGSSCS--LLVIDRGNQAIREIQLHDDDCS-DNYD-DTFHLGIFVLV  187 (445)
Q Consensus       138 ~P~gI~~vd~dG~--LyVaD~gn~rIr~i~l~~~~~~-~~~~-~g~P~gIav~~  187 (445)
                      .|.+++ +.++|+  ||++....+.|+.++....... .... ...|..+++..
T Consensus       319 ~~~~~a-~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         319 DVDAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CeeEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            456665 577775  6788889999999998765443 3433 34677777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.48  E-value=1.1  Score=38.57  Aligned_cols=74  Identities=8%  Similarity=0.001  Sum_probs=43.0

Q ss_pred             cceEEEcCCCCEEEEeCCCCEEEEEcCC-CcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321           83 PKGLAVDDRGNIYIADTMNMAIRKISDT-GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI  161 (445)
Q Consensus        83 P~GIavD~dG~LYVAD~~N~rIrkfd~d-Gv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI  161 (445)
                      ...|+++++|.++++=..++.|+.+|.. +........       ..     ..-..-.++. ..+++.++++-..++.|
T Consensus       182 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-------~~-----~h~~~v~~l~-~s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-------WT-----FHTAKVACVS-WSPDNVRLATGSLDNSV  248 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC-------CC-----CCSSCEEEEE-ECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccccccccccccccccc-------cc-----cccccccccc-ccccccceEEEcCCCEE
Confidence            4688899998866655557788888843 322110000       00     0011223444 46777777766667888


Q ss_pred             EEEECCCC
Q 013321          162 REIQLHDD  169 (445)
Q Consensus       162 r~i~l~~~  169 (445)
                      +.+++...
T Consensus       249 ~iwd~~~~  256 (299)
T d1nr0a2         249 IVWNMNKP  256 (299)
T ss_dssp             EEEETTCT
T ss_pred             EEEECCCC
Confidence            88887653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.00  E-value=5.4  Score=36.04  Aligned_cols=134  Identities=16%  Similarity=0.088  Sum_probs=72.1

Q ss_pred             CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .....|+++++| ++++-+.++.|+.++...   ++............++         -..-..|++.|+|.++++=..
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~---~~~~~~~~~~~~l~~h---------~~~V~~l~~spdg~~l~sgs~  251 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELST---LRPLYNFESQHSMINN---------SNSIRSVKFSPQGSLLAIAHD  251 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTT---TEEEEEEECCC---CC---------CCCEEEEEECSSTTEEEEEEE
T ss_pred             CcEEEEEECCCC-EEEEEeCCCcEEEEeecc---cccccccccccccccc---------cceEEEcccccccceeeeecC
Confidence            346789999987 556777788999998763   3332221111111111         122458999999997765332


Q ss_pred             ---CCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 013321          101 ---NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  172 (445)
Q Consensus       101 ---N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~  172 (445)
                         -..|+.+|.. |  +.++.......    .........-..-++|+ ..+++.++++-...+.|+..+.....+.
T Consensus       252 D~t~~~i~lwd~~~g~~~~~l~~~~~~~----~~~~~~~gH~~~V~~l~-fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         252 SNSFGCITLYETEFGERIGSLSVPTHSS----QASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC------------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCcceeeecccccceeeeeeccccccc----cceeeeecccCceeeec-cCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence               2357777743 3  33332211000    00000001111224454 4678888888777888888887765443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.91  E-value=1.1  Score=41.81  Aligned_cols=69  Identities=10%  Similarity=0.004  Sum_probs=47.8

Q ss_pred             CceEEEEcCC--CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321           22 EPFSVAVSPS--GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD   98 (445)
Q Consensus        22 ~P~gIAVdpd--G~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD   98 (445)
                      .|..+.++.|  +.++|+...++.|..+|..+   +++......+                ..|.+|++.|||. ||++.
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t---~~~~~~l~~g----------------~~~~~vafSPDGk~l~~~~   80 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDS---KKIVKVIDTG----------------YAVHISRMSASGRYLLVIG   80 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTT---CSEEEEEECC----------------SSEEEEEECTTSCEEEEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCC---CcEEEEEeCC----------------CCeeEEEECCCCCEEEEEe
Confidence            4555556554  33678899999999999873   4443222110                2588999999999 77887


Q ss_pred             CCCCEEEEEcCC
Q 013321           99 TMNMAIRKISDT  110 (445)
Q Consensus        99 ~~N~rIrkfd~d  110 (445)
                      . .+.|+++|.+
T Consensus        81 ~-d~~v~vwd~~   91 (426)
T d1hzua2          81 R-DARIDMIDLW   91 (426)
T ss_dssp             T-TSEEEEEETT
T ss_pred             C-CCCEEEEEcc
Confidence            5 4689999854

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.78  E-value=2.3  Score=36.77  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=60.0

Q ss_pred             EEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE-EeCCCCE
Q 013321           27 AVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-ADTMNMA  103 (445)
Q Consensus        27 AVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD~~N~r  103 (445)
                      -++| ||+++++.. .+.|+.++..+   +.+..+ +.                -....++++.+||. |++ ++.....
T Consensus         9 ~fSP~dG~~~a~~~-~g~v~v~d~~~---~~~~~~-~~----------------~~~v~~~~~spDg~~l~~~~~~~g~~   67 (360)
T d1k32a3           9 DFSPLDGDLIAFVS-RGQAFIQDVSG---TYVLKV-PE----------------PLRIRYVRRGGDTKVAFIHGTREGDF   67 (360)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTS---SBEEEC-SC----------------CSCEEEEEECSSSEEEEEEEETTEEE
T ss_pred             cccCCCCCEEEEEE-CCeEEEEECCC---CcEEEc-cC----------------CCCEEEEEECCCCCEEEEEEcCCCCE
Confidence            3566 787766654 45788887763   333332 11                11346899999997 433 4444456


Q ss_pred             EEEEcCCC-c-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321          104 IRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  171 (445)
Q Consensus       104 Irkfd~dG-v-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~  171 (445)
                      |+..|..+ . ..+...                 .....+++ ..++|..+++-...+.|+.++..+..+
T Consensus        68 v~v~d~~~~~~~~~~~~-----------------~~~v~~~~-~spdg~~l~~~~~~~~~~~~~~~~~~~  119 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEEN-----------------LGNVFAMG-VDRNGKFAVVANDRFEIMTVDLETGKP  119 (360)
T ss_dssp             EEEEETTTCCEEECCCC-----------------CCSEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEECCCCcEEEeeCC-----------------CceEEeee-ecccccccceeccccccccccccccce
Confidence            77887554 2 222111                 01123443 466776666666677777777766443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.46  E-value=0.96  Score=41.04  Aligned_cols=116  Identities=12%  Similarity=0.030  Sum_probs=65.7

Q ss_pred             CCc-eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321           21 MEP-FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        21 ~~P-~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      ..| .+++++|+|+++++-..++.|..++..+   ++...+.--    .|+ .        ..-..|++.++|+++++=.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~---~~~~~~~~l----~gH-~--------~~V~~l~fsp~~~~l~s~s   70 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSG---NKWVQVHEL----KEH-N--------GQVTGVDWAPDSNRIVTCG   70 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEET---TEEEEEEEE----ECC-S--------SCEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCC---CCEEEEEEe----cCC-C--------CCEEEEEECCCCCEEEEEE
Confidence            345 7999999999888888888888888763   332222110    111 1        1235889999998665434


Q ss_pred             CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          100 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       100 ~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      ..+.|+..|...   ..++....      .         -....++. ..+++..+++-..++.|+.+..+.
T Consensus        71 ~D~~i~vWd~~~~~~~~~~~~~~------~---------~~~v~~i~-~~p~~~~l~~~s~d~~i~i~~~~~  126 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTWKPTLVILR------I---------NRAARCVR-WAPNEKKFAVGSGSRVISICYFEQ  126 (371)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCC------C---------SSCEEEEE-ECTTSSEEEEEETTSSEEEEEEET
T ss_pred             CCCeEEEEeeccccccccccccc------c---------cccccccc-cccccccceeecccCcceeeeeec
Confidence            456677777432   11221100      0         01223444 356666666656666666655443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.94  E-value=3.8  Score=36.26  Aligned_cols=76  Identities=16%  Similarity=0.110  Sum_probs=43.0

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-CCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN  101 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~-~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N  101 (445)
                      ..+|+++|+|+++++-...+.|..++...   +......... ....|+         -..-..|+++++|.++++=...
T Consensus       192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~---~~~~~~~~~~~~~~~~h---------~~~V~~~~~s~~~~~l~tgs~D  259 (311)
T d1nr0a1         192 VHSVRYNPDGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAH---------SGSVFGLTWSPDGTKIASASAD  259 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSS---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccCcccccccccccccccccccccc---ccccccccccccccccc---------cccccccccCCCCCEEEEEeCC
Confidence            46777777777766665666777776542   2222221111 000111         1123578899988877665556


Q ss_pred             CEEEEEcCC
Q 013321          102 MAIRKISDT  110 (445)
Q Consensus       102 ~rIrkfd~d  110 (445)
                      +.|+.+|..
T Consensus       260 g~v~iwd~~  268 (311)
T d1nr0a1         260 KTIKIWNVA  268 (311)
T ss_dssp             SEEEEEETT
T ss_pred             CeEEEEECC
Confidence            788888843

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.92  E-value=6.3  Score=33.79  Aligned_cols=72  Identities=8%  Similarity=0.087  Sum_probs=46.1

Q ss_pred             CCceEEEEcCCCcE-EEE-eCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321           21 MEPFSVAVSPSGEL-LVL-DSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD   98 (445)
Q Consensus        21 ~~P~gIAVdpdG~L-YVa-Ds~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD   98 (445)
                      ....+++++|||.. +++ +.....|+.++..+   +.+..+.+.                -.....+++.++|..+++-
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~---~~~~~~~~~----------------~~~v~~~~~spdg~~l~~~  103 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---GKAEKFEEN----------------LGNVFAMGVDRNGKFAVVA  103 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTT---CCEEECCCC----------------CCSEEEEEECTTSSEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC---CcEEEeeCC----------------CceEEeeeeccccccccee
Confidence            34678889898873 333 33334566777653   333333221                1234689999999977777


Q ss_pred             CCCCEEEEEcCCC
Q 013321           99 TMNMAIRKISDTG  111 (445)
Q Consensus        99 ~~N~rIrkfd~dG  111 (445)
                      ...+.|+.++.++
T Consensus       104 ~~~~~~~~~~~~~  116 (360)
T d1k32a3         104 NDRFEIMTVDLET  116 (360)
T ss_dssp             ETTSEEEEEETTT
T ss_pred             ccccccccccccc
Confidence            7788888888655

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.77  E-value=6.2  Score=34.75  Aligned_cols=123  Identities=12%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      ....|+++|+|. ++++-..++.|..++...   ++........               -..-..|+++++|+++++=..
T Consensus       148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~~---------------~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEH---------------TKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCC---------------SSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccceeeecccccccccccccccc---cccccccccc---------------cccccccccCccccccccccc
Confidence            357788888776 466666677788887652   3332222111               112368999999997665445


Q ss_pred             CCEEEEEcCC-CcEEEecCc-ccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 013321          101 NMAIRKISDT-GVTTIAGGK-WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  172 (445)
Q Consensus       101 N~rIrkfd~d-Gv~tiaGg~-~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~  172 (445)
                      .+.|+.+|.. +..+..... .....+.         -..-.++. ..+++.++++-...+.|+.++.....+.
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h---------~~~V~~~~-~s~~~~~l~tgs~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAH---------SGSVFGLT-WSPDGTKIASASADKTIKIWNVATLKVE  273 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSS---------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccccccccccccccccccccccccc---------cccccccc-cCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            6778888843 322211110 0000000         01123443 4566666666555667777776655443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.75  E-value=7.1  Score=34.15  Aligned_cols=85  Identities=12%  Similarity=0.007  Sum_probs=46.7

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCcc---CccCCCcceEEEcCCCCEEEEeC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPR---GARMNHPKGLAVDDRGNIYIADT   99 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~---~a~Ln~P~GIavD~dG~LYVAD~   99 (445)
                      -..|++++||+++++-. ++.|..++...   ++....................   ...-..=.+|++.++|+++++=.
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSD---GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTT---CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecc---cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            46899999999887764 67888888652   3333222211000000000000   00011124789999998777666


Q ss_pred             CCCEEEEEcCCC
Q 013321          100 MNMAIRKISDTG  111 (445)
Q Consensus       100 ~N~rIrkfd~dG  111 (445)
                      .++.|+..+...
T Consensus       141 ~dg~v~i~~~~~  152 (388)
T d1erja_         141 EDRLIRIWDIEN  152 (388)
T ss_dssp             TTSCEEEEETTT
T ss_pred             cccccccccccc
Confidence            677888888543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=6.4  Score=34.46  Aligned_cols=73  Identities=16%  Similarity=0.084  Sum_probs=45.7

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      -.+|++.|+|+++++-..++.|..++..... ++.......      +         -..-..+++++++.++++-..+.
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~------~---------~~~v~~~~~~~~~~~l~s~~~d~  163 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-PRIKAELTS------S---------APACYALAISPDSKVCFSCCSDG  163 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC---EEEEEEEC------S---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEeecccccccccccccc-ccccccccc------c---------ccccccccccccccccccccccc
Confidence            3689999999988877778899988865211 111111110      0         11224677888888777666677


Q ss_pred             EEEEEcCCC
Q 013321          103 AIRKISDTG  111 (445)
Q Consensus       103 rIrkfd~dG  111 (445)
                      .|+.++...
T Consensus       164 ~i~~~~~~~  172 (337)
T d1gxra_         164 NIAVWDLHN  172 (337)
T ss_dssp             CEEEEETTT
T ss_pred             ccccccccc
Confidence            788888543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.67  E-value=1.9  Score=40.93  Aligned_cols=81  Identities=15%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             CCCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC----CCC
Q 013321           19 FGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD----RGN   93 (445)
Q Consensus        19 ~g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~----dG~   93 (445)
                      .+.++.|+++|. ++.|||++. +-.|++++.+.........+.....+.           -..-|.||++-.    +|-
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~-----------l~~D~EGlaiy~~~~~~Gy  245 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRH-----------LTPDIEGLTIYYAADGKGY  245 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSS-----------CCSCEEEEEEEECGGGCEE
T ss_pred             CCCccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCcc-----------ccCCccccEEEEcCCCCeE
Confidence            346899999998 578999986 568999986532211222222111000           123578998763    566


Q ss_pred             EEEEeCCCCEEEEEcCCC
Q 013321           94 IYIADTMNMAIRKISDTG  111 (445)
Q Consensus        94 LYVAD~~N~rIrkfd~dG  111 (445)
                      |.|++.++++...|+..+
T Consensus       246 livSsQG~n~f~vydr~~  263 (353)
T d1h6la_         246 LLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEEGGGTEEEEEESST
T ss_pred             EEEEcCCCCeEEEEecCC
Confidence            999999999999999765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.95  E-value=5  Score=35.94  Aligned_cols=116  Identities=10%  Similarity=-0.084  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      -..|+++|+|+++++-..++.|..++.+.   +......-..    +         .-.....|+++++|+.+++=..++
T Consensus        54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~---~~~~~~~~~~----~---------~~~~v~~i~~~p~~~~l~~~s~d~  117 (371)
T d1k8kc_          54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKG---RTWKPTLVIL----R---------INRAARCVRWAPNEKKFAVGSGSR  117 (371)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEET---TEEEEEEECC----C---------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEeecc---cccccccccc----c---------ccccccccccccccccceeecccC
Confidence            47899999999877776777888877652   2222111110    0         012356899999998666555566


Q ss_pred             EEEEEc--CCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321          103 AIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  168 (445)
Q Consensus       103 rIrkfd--~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~  168 (445)
                      .|+.++  ... .........+    .         -....++. ..+++.++++-...+.|+.++...
T Consensus       118 ~i~i~~~~~~~~~~~~~~~~~~----~---------~~~v~~v~-~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         118 VISICYFEQENDWWVCKHIKKP----I---------RSTVLSLD-WHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             SEEEEEEETTTTEEEEEEECTT----C---------CSCEEEEE-ECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cceeeeeecccccccccccccc----c---------cccccccc-ccccccceeccccCcEEEEEeecc
Confidence            555554  333 2221110000    0         01123343 466777777666678888888654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.72  E-value=9.1  Score=33.37  Aligned_cols=71  Identities=17%  Similarity=0.152  Sum_probs=44.7

Q ss_pred             ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321           23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  102 (445)
Q Consensus        23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~  102 (445)
                      -.+|+++++|+++++-..++.|..++...   ++.......      +         -..-..+++.+++...++=...+
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~---~~~~~~~~~------h---------~~~v~~~~~~~~~~~~~~~~~~~  185 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIEN---RKIVMILQG------H---------EQDIYSLDYFPSGDKLVSGSGDR  185 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECC------C---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCcceecccccccccccccc---ccccccccc------c---------cccccccccccccccccccccce
Confidence            35789999999888888888898888752   332222111      0         11234677777776554444567


Q ss_pred             EEEEEcCCC
Q 013321          103 AIRKISDTG  111 (445)
Q Consensus       103 rIrkfd~dG  111 (445)
                      .|+..|...
T Consensus       186 ~i~~~d~~~  194 (388)
T d1erja_         186 TVRIWDLRT  194 (388)
T ss_dssp             EEEEEETTT
T ss_pred             eeeeeeccc
Confidence            788777554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.40  E-value=7.6  Score=31.94  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=48.0

Q ss_pred             CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321           22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM  100 (445)
Q Consensus        22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  100 (445)
                      .-.+|+++|+|+++++-+.++.|..++...   ++. ..+-+.                -..-..+++++++.++++-..
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~---~~~~~~~~~h----------------~~~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYET---GDFERTLKGH----------------TDSVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTT---CCCCEEECCC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CCEEEEEeCC----------------CCcEEEEeeeccccccccccc
Confidence            357899999999988888889999998763   222 222111                112358899999987776666


Q ss_pred             CCEEEEEcCCC
Q 013321          101 NMAIRKISDTG  111 (445)
Q Consensus       101 N~rIrkfd~dG  111 (445)
                      ...+...+...
T Consensus        80 ~~~~~~~~~~~   90 (317)
T d1vyhc1          80 DMTIKLWDFQG   90 (317)
T ss_dssp             TSCCCEEETTS
T ss_pred             ccccccccccc
Confidence            66666666433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.92  E-value=5.4  Score=37.67  Aligned_cols=74  Identities=27%  Similarity=0.338  Sum_probs=48.0

Q ss_pred             CcceEEEcC-CCCEEEEeCCCCEEEEEcCC--C---cEEEecCcccCCCCCCCCCccCcccCCCceEEEE---CCCCeEE
Q 013321           82 HPKGLAVDD-RGNIYIADTMNMAIRKISDT--G---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSCSLL  152 (445)
Q Consensus        82 ~P~GIavD~-dG~LYVAD~~N~rIrkfd~d--G---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~v---d~dG~Ly  152 (445)
                      .+.|+++|+ ++.|||++- +..|++++.+  +   ..++....    ++.        -...|-+|++.   +.+|.|+
T Consensus       181 q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~----g~~--------l~~D~EGlaiy~~~~~~Gyli  247 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRAD----GRH--------LTPDIEGLTIYYAADGKGYLL  247 (353)
T ss_dssp             CEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECS----SSS--------CCSCEEEEEEEECGGGCEEEE
T ss_pred             ccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeeccc----Ccc--------ccCCccccEEEEcCCCCeEEE
Confidence            567999997 577999997 5789999743  2   23321110    011        11245566533   3457899


Q ss_pred             EEECCCCeEEEEECCC
Q 013321          153 VIDRGNQAIREIQLHD  168 (445)
Q Consensus       153 VaD~gn~rIr~i~l~~  168 (445)
                      +++-++++...++..+
T Consensus       248 vSsQG~n~f~vydr~~  263 (353)
T d1h6la_         248 ASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCeEEEEecCC
Confidence            9999999999998654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.48  E-value=15  Score=32.03  Aligned_cols=72  Identities=14%  Similarity=0.037  Sum_probs=43.2

Q ss_pred             CCceEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc---CCCCEEE
Q 013321           21 MEPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD---DRGNIYI   96 (445)
Q Consensus        21 ~~P~gIAVdpd-G~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD---~dG~LYV   96 (445)
                      ....+|+++|+ +.++++-..++.|..++...   ++........   ..            ...++.+.   ++|.+++
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~---~~~~~~l~~~---~~------------~v~~~~~s~~~~dg~~l~  267 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---GEFLKYIEDD---QE------------PVQGGIFALSWLDSQKFA  267 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTT---CCEEEECCBT---TB------------CCCSCEEEEEESSSSEEE
T ss_pred             CccEEeeeccccceeccccccccceeeeeecc---cccccccccc---cc------------ccccceeeeeccCCCEEE
Confidence            44678999985 67888777788899888652   3332222111   00            01122222   5777666


Q ss_pred             EeCCCCEEEEEcCC
Q 013321           97 ADTMNMAIRKISDT  110 (445)
Q Consensus        97 AD~~N~rIrkfd~d  110 (445)
                      +=...+.|+.+|..
T Consensus       268 s~s~D~~i~iwd~~  281 (325)
T d1pgua1         268 TVGADATIRVWDVT  281 (325)
T ss_dssp             EEETTSEEEEEETT
T ss_pred             EEeCCCeEEEEECC
Confidence            65667888888844