Citrus Sinensis ID: 013324
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NUT3 | 480 | Major facilitator superfa | yes | no | 0.791 | 0.733 | 0.305 | 5e-45 | |
| Q3U481 | 476 | Major facilitator superfa | yes | no | 0.806 | 0.754 | 0.316 | 1e-44 | |
| P94488 | 463 | Uncharacterized symporter | yes | no | 0.413 | 0.397 | 0.257 | 0.0005 |
| >sp|Q6NUT3|MFS12_HUMAN Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 182 bits (461), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 208/413 (50%), Gaps = 61/413 (14%)
Query: 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
+P+ + L Y GH LND+ A+ WFTYLLL+L + S RGA ++L GQ+ADG T
Sbjct: 15 RPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTP 74
Query: 78 FIGELID-------RFGHFKIWHGAGSVLVAVSFSSV----------------------- 107
+G D R+G K WH G+V V +SF +
Sbjct: 75 LVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAALLYYGPF 134
Query: 108 -----FGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV--- 159
FGWA+TQ++H+S++ + N +V LT+ R AFT+VAN+++Y A+++ +
Sbjct: 135 IVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHLQGS 194
Query: 160 STAKTHAD--LENQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHA 209
S + D + +Q +R ++ + +G F +F T E R H
Sbjct: 195 SRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERRRPHAEEPGEHT 254
Query: 210 R----------ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA 259
+ W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+ L + + A
Sbjct: 255 PLLAPATAQPLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKKFIA 314
Query: 260 LVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 319
+P ++Y+ F+ S L++ + R Y+S G+L + A + L + +Y A
Sbjct: 315 TIPLVMYLSGFLSSFLMKPINKCIGRNMTYFS--GLLVILAFAAWVALAEGLGVAVYAAA 372
Query: 320 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372
+ +G A ++VT ++M L+G + AFV G++SFLDK++ G+AV +QS
Sbjct: 373 VLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQS 425
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Homo sapiens (taxid: 9606) |
| >sp|Q3U481|MFS12_MOUSE Major facilitator superfamily domain-containing protein 12 OS=Mus musculus GN=Mfsd12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 210/420 (50%), Gaps = 61/420 (14%)
Query: 12 ENDDSFTQPVGRWSV---LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLS 67
+DD+ P S+ L + GH LND+ A WFTYLLLFL + G S RGA ++L
Sbjct: 4 PSDDAGPGPPRTLSLAARLSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLL 63
Query: 68 GQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSV--------------- 107
GQ+ADG T +G DR G K WH AG+V V +SF +
Sbjct: 64 GQVADGLCTPLVGYEADRASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCGEATPEWA 123
Query: 108 -------------FGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 154
FGWAATQ+AH+S++ + + +V LT+ R AFT+VAN+++Y A+
Sbjct: 124 ALLYYGPFIVVFQFGWAATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGAAW 183
Query: 155 IVFSVS-TAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-- 201
++ + +A D+ +Q +R +A + +G F +F T+E
Sbjct: 184 LLLHLQGSAHGEQDISVGDQLGVQDVPVFRNLALLVVGVGAIFSLLFHLGTKEGHRSQHW 243
Query: 202 GLRGNSHARIS---------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 252
G N H + W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+ L
Sbjct: 244 GNEPNEHTPLVAPAAQPLLLWKHWLREPAFYQVGMLYMTTRLIVNLSQTYIAMYLTYSLS 303
Query: 253 MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMS 312
+ + A +P ++Y+ F S L++ + R Y++ G+L + A + L N+
Sbjct: 304 LPKKFIATIPLVMYLSGFFSSFLMKPVNRRIGRNMTYFT--GLLVILAFAAWVALADNLG 361
Query: 313 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372
+Y A+ +G A ++VT ++M L+G AFV G +SF DK++ G+AV +QS
Sbjct: 362 VAVYGAAVLLGAGCATILVTSLAMTADLIGPHTHSGAFVYGAMSFSDKVANGLAVMAVQS 421
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Mus musculus (taxid: 10090) |
| >sp|P94488|YNAJ_BACSU Uncharacterized symporter YnaJ OS=Bacillus subtilis (strain 168) GN=ynaJ PE=3 SV=2 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 37/221 (16%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
Y SG ++ A TYLL F TD+ GLS A + L +I D A FIG ++D
Sbjct: 17 YASGDFACNLIYATVSTYLLFFYTDVFGLSAAAAGTMFLVVRIIDALADPFIGTIVDRTN 76
Query: 85 -RFGHFKIWHGAGS---VLVAV------SFSSV--------------FGWAATQVAHMSM 120
RFG F+ + G+ V++A+ FS + + V + ++
Sbjct: 77 SRFGRFRPYLLFGAFPFVILAILCFTTPDFSDMGKLIYAYITYVGLSLTYTTINVPYGAL 136
Query: 121 VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 180
+ +T N+ V +TS R F ANL +AF V ++ + W I
Sbjct: 137 TSAMTRNNQEVVSITSVRMLF---ANLGGLVVAFFVPLLAAYLSDTSGNESLGWQLTMGI 193
Query: 181 F--IGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 219
IG C + IF ++ + R+ + S +I + F++
Sbjct: 194 LGMIGGCLL-IFCFKSTKERVTL---QKSEEKIKFTDIFEQ 230
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Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | ||||||
| 255542273 | 454 | conserved hypothetical protein [Ricinus | 0.952 | 0.933 | 0.701 | 0.0 | |
| 224120942 | 457 | predicted protein [Populus trichocarpa] | 0.952 | 0.927 | 0.682 | 0.0 | |
| 224106589 | 442 | predicted protein [Populus trichocarpa] | 0.919 | 0.925 | 0.682 | 0.0 | |
| 359487445 | 453 | PREDICTED: uncharacterized MFS-type tran | 0.939 | 0.922 | 0.678 | 0.0 | |
| 356557090 | 452 | PREDICTED: uncharacterized MFS-type tran | 0.946 | 0.931 | 0.677 | 1e-180 | |
| 356525698 | 452 | PREDICTED: uncharacterized MFS-type tran | 0.946 | 0.931 | 0.675 | 1e-179 | |
| 449436234 | 457 | PREDICTED: major facilitator superfamily | 0.959 | 0.934 | 0.663 | 1e-177 | |
| 297820866 | 459 | AT3g60070/T2O9_50 [Arabidopsis lyrata su | 0.948 | 0.919 | 0.659 | 1e-177 | |
| 255646539 | 452 | unknown [Glycine max] | 0.946 | 0.931 | 0.668 | 1e-177 | |
| 240255671 | 458 | major facilitator protein [Arabidopsis t | 0.943 | 0.917 | 0.658 | 1e-176 |
| >gi|255542273|ref|XP_002512200.1| conserved hypothetical protein [Ricinus communis] gi|223548744|gb|EEF50234.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/469 (70%), Positives = 379/469 (80%), Gaps = 45/469 (9%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M DIE+D+S+ +PVGRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGDDIEDDNSYPKPVGRWPVFYYGVGHMLNDITAACWFTYLLLFLTDIGLSPRDAATVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG----------------- 109
SGQIADGFATIF GELIDRFGHFK+WHGAGSVLVA+SFSSVFG
Sbjct: 61 SGQIADGFATIFAGELIDRFGHFKVWHGAGSVLVAISFSSVFGGCFPCKILGTNSSTIET 120
Query: 110 -------------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 156
WAATQV+HMSMVNCI+LNSTSRVV+ SCRNAFTMVANLSLYAIA +
Sbjct: 121 VSYSIFAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMASCRNAFTMVANLSLYAIALTI 180
Query: 157 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 216
F+VS A+THAD++NQYRWIAY SI GCCFVGIF T+EPRLK+ L S ARISW YW
Sbjct: 181 FNVSKAETHADIQNQYRWIAYLSICFGCCFVGIFHLGTKEPRLKISLHEISCARISWTYW 240
Query: 217 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 276
FKKILYYQV LVY+LTRLV NVSQAYLAFYVINDLRM QSAKALVPAIIYI SF++S+++
Sbjct: 241 FKKILYYQVGLVYVLTRLVQNVSQAYLAFYVINDLRMAQSAKALVPAIIYISSFVISVIM 300
Query: 277 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 336
QE++WTGQRLKAYYSAGG+LW+FCGA IL+LP +MSAFMY+++IF+GI NALM VTG+SM
Sbjct: 301 QEISWTGQRLKAYYSAGGILWMFCGASILLLPRSMSAFMYIISIFIGIGNALMTVTGVSM 360
Query: 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 396
++VLVG DL+GCAFVCG+L FLDK+SCG+A+Y LQS+Q++SP V DN
Sbjct: 361 ESVLVGSDLNGCAFVCGSLGFLDKISCGLALYALQSFQTISPKVQDN------------- 407
Query: 397 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 445
+S +ISVTRFGLGL+PA CSLV V VT++MKLHT Y KPL+EPLL+
Sbjct: 408 --LSIEHISVTRFGLGLVPAFCSLVGVGVTYSMKLHTAYPKPLIEPLLE 454
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120942|ref|XP_002330864.1| predicted protein [Populus trichocarpa] gi|222872686|gb|EEF09817.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/472 (68%), Positives = 375/472 (79%), Gaps = 48/472 (10%)
Query: 7 MNYDIENDD---SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAA 63
M D+ENDD S+ +PVGR V YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA
Sbjct: 1 MRNDVENDDDDDSYPKPVGRRCVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAI 60
Query: 64 VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG-------------- 109
ML+GQIADGFAT+F GELIDRFGHFK+WHGAGS+LVA+SFSSVFG
Sbjct: 61 AMLAGQIADGFATVFAGELIDRFGHFKVWHGAGSILVAISFSSVFGGCLPCKILASCSSV 120
Query: 110 ----------------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 153
WAATQV+HMSMVNCI+LNS+SRVV+TSCRNAFTMVANLSLYA+A
Sbjct: 121 VETVSYSTSAAIFNVGWAATQVSHMSMVNCISLNSSSRVVMTSCRNAFTMVANLSLYAVA 180
Query: 154 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW 213
+VFS A THAD+ENQYRWIAY+SIFIGCCFVGIF T+EPRLK+ + G S+ARISW
Sbjct: 181 LVVFSSIKATTHADIENQYRWIAYTSIFIGCCFVGIFHLGTKEPRLKICVHGTSNARISW 240
Query: 214 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS 273
AYWFKK+LYYQV LVYMLTRLV NVSQ YLAFYV++DL+M +SAKALVPAIIY+ SF VS
Sbjct: 241 AYWFKKVLYYQVGLVYMLTRLVQNVSQVYLAFYVMDDLQMAKSAKALVPAIIYMSSFFVS 300
Query: 274 ILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTG 333
+++QEM+WTGQRLKAYYSAGG+LWVFCGAGIL LP NMSAFMYV+++ +GIANALM VTG
Sbjct: 301 VIMQEMSWTGQRLKAYYSAGGILWVFCGAGILFLPRNMSAFMYVISVLIGIANALMTVTG 360
Query: 334 ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVL 393
+SMQ++LVG DL+GCAFV G+LSFLDK+SCG+AV+ LQS+QS SP
Sbjct: 361 VSMQSILVGSDLNGCAFVYGSLSFLDKISCGLAVFALQSFQSSSP--------------- 405
Query: 394 DNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 445
+ST Y SVTR+GLGL+PA+CSL VA+T+TMKL T SK L+EPLL+
Sbjct: 406 KTEEALSTDYFSVTRYGLGLLPAVCSLAGVAITYTMKLQTQDSKSLMEPLLE 457
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106589|ref|XP_002314218.1| predicted protein [Populus trichocarpa] gi|222850626|gb|EEE88173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/466 (68%), Positives = 368/466 (78%), Gaps = 57/466 (12%)
Query: 10 DIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ 69
D+E+DDS +PVGR SV YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA VML+GQ
Sbjct: 4 DVEDDDSCPKPVGRSSVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAIVMLAGQ 63
Query: 70 IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG-------------------- 109
IADGFAT+F GELIDRFGHFKIWHGAGS+L A+SFSSVFG
Sbjct: 64 IADGFATVFAGELIDRFGHFKIWHGAGSILAAISFSSVFGGCLPCKILASSSPIIETISY 123
Query: 110 ----------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 159
WAATQV+HMSMVNCI+LNSTSRVV+TSCRNAFTMVANLSLYA+A +VFS
Sbjct: 124 STSAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMTSCRNAFTMVANLSLYAVALVVFST 183
Query: 160 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 219
+ A TH+D+ENQY WIAY+SIFIGCCFVGIF T+EPRLK+ + G S+ARISWAYWFKK
Sbjct: 184 TKATTHSDIENQYHWIAYTSIFIGCCFVGIFHLGTKEPRLKIRVHGTSYARISWAYWFKK 243
Query: 220 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 279
+LYYQV LVYMLTRL NVSQAYLAFYVI D+RM +SAKALVPAIIYI SFIVSI++QEM
Sbjct: 244 VLYYQVGLVYMLTRLAQNVSQAYLAFYVIEDMRMAKSAKALVPAIIYISSFIVSIIMQEM 303
Query: 280 AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNV 339
WTGQRLKAYY AGGVLWVFCGA IL LP ++SAFMYV+++F+G+AN LM +TG+SMQ+V
Sbjct: 304 YWTGQRLKAYYCAGGVLWVFCGASILFLPRSLSAFMYVISVFIGVANTLMTITGVSMQSV 363
Query: 340 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLI 399
LVG DL GCAFV G+LSFLDK+SCG+AV+VLQS+Q
Sbjct: 364 LVGSDLDGCAFVYGSLSFLDKVSCGLAVFVLQSFQ------------------------- 398
Query: 400 STSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 445
YISVTR+GLGL+PA+CSL +A+T+TMKL TP+SK L+EPLL+
Sbjct: 399 --KYISVTRYGLGLLPAVCSLTGMAITYTMKLQTPHSKSLMEPLLE 442
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487445|ref|XP_002270525.2| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Vitis vinifera] gi|297741204|emb|CBI32155.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/464 (67%), Positives = 368/464 (79%), Gaps = 46/464 (9%)
Query: 11 IENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI 70
+E+DD+FT+P+GR +V YYG GHMLNDIT+ACWFTYLL+FLTDIGL R AA VMLSGQI
Sbjct: 5 MEDDDAFTKPLGRQAVFYYGVGHMLNDITSACWFTYLLVFLTDIGLPSRDAATVMLSGQI 64
Query: 71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG--------------------- 109
ADGF TIF GELIDRFGHFKIWHGAGS+LVAVSFSSVFG
Sbjct: 65 ADGFTTIFAGELIDRFGHFKIWHGAGSILVAVSFSSVFGGCLPCKIFGSNSSTLQTVGYS 124
Query: 110 ---------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 160
WAATQV+HMSMVNCITLNSTSRVVL SCRNAFTMVANLSLYA+AF+VF+ S
Sbjct: 125 MFAAIFNVGWAATQVSHMSMVNCITLNSTSRVVLASCRNAFTMVANLSLYAVAFVVFNSS 184
Query: 161 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI 220
T D+ENQYRWIAY SI IGCCFV IFL T+EPRLK G G +ARI W++WF+K+
Sbjct: 185 KPHTLVDIENQYRWIAYLSIAIGCCFVAIFLLGTKEPRLKKGAHGKGYARILWSHWFRKV 244
Query: 221 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA 280
LYYQVALVY+LTRLV NVSQA+LAFYVINDL+M QS+KALVPAIIYICSFIVSI+LQE
Sbjct: 245 LYYQVALVYVLTRLVTNVSQAFLAFYVINDLQMSQSSKALVPAIIYICSFIVSIILQEFT 304
Query: 281 WTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL 340
W+GQRLKA+YSAGG+LW+ CGAGIL LP NM+AFMY+L+I +GIANALMMVTG+SMQ+ L
Sbjct: 305 WSGQRLKAFYSAGGILWIICGAGILFLPRNMNAFMYILSIIIGIANALMMVTGVSMQSFL 364
Query: 341 VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLIS 400
VGEDL GCAFV G+LSFLDK+SCG+A++VL+SY + SP + S+IS
Sbjct: 365 VGEDLHGCAFVYGSLSFLDKISCGLALFVLESYGNSSPDL--------------QGSVIS 410
Query: 401 TSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 444
SV+R+GLG++PA+C+LV V VT+TM LHTP KP++EPLL
Sbjct: 411 R--FSVSRYGLGVVPAVCALVGVVVTYTMNLHTPVPKPIMEPLL 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557090|ref|XP_003546851.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 317/468 (67%), Positives = 366/468 (78%), Gaps = 47/468 (10%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E DD++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AAAVML
Sbjct: 1 MGTIVEADDTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAAVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG----------------- 109
SGQ+ADGFATI +GELIDRFGHFKIWHGAGS+LVA+SFSSVFG
Sbjct: 61 SGQVADGFATILVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSCTFET 120
Query: 110 -------------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 156
WAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 VSYSVFAAIFNLGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 157 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 216
FSV KTH D+ENQYRWIAY SIFIGCCFVG+FL T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYFSIFIGCCFVGVFLLATKEPRLKLGVHGMVHARISWDYW 240
Query: 217 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 276
FK+ILYYQVALVY+LTRLV+N+SQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNISQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 277 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 336
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 396
QN L+G +L+GCAFV G+LSFLDK+SCGIA+YVLQS Q++SP + + T
Sbjct: 361 QNFLIGGNLNGCAFVVGSLSFLDKISCGIALYVLQSNQNLSPQL----QATTQFP----- 411
Query: 397 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 444
SVTR GLGL+PA C+LV V VT TM H P SK + PLL
Sbjct: 412 -------FSVTRVGLGLVPAFCALVGVVVTCTMDFHNP-SKSMTAPLL 451
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525698|ref|XP_003531460.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 316/468 (67%), Positives = 365/468 (77%), Gaps = 47/468 (10%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG----------------- 109
SGQ+ADGF TIF+GELIDRFGHFKIWHGAGS+LVA+SFSSVFG
Sbjct: 61 SGQVADGFVTIFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120
Query: 110 -------------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 156
WAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 157 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 216
FSV KTH D+ENQYRWIAY SIFIGCCFVG+F T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYLSIFIGCCFVGVFHLATKEPRLKVGVHGMVHARISWDYW 240
Query: 217 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 276
FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 277 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 336
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 396
QN L+GE+L+GCAFV G+LSFLDK+SCG+A+YVLQS Q++SP + + T
Sbjct: 361 QNFLIGENLNGCAFVVGSLSFLDKISCGLALYVLQSNQNLSPQL----QATTQFP----- 411
Query: 397 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 444
SVTR GLGL+PA C+LV V VT TM H P SK L PLL
Sbjct: 412 -------FSVTRIGLGLVPAFCALVGVVVTCTMDFHNP-SKSLTAPLL 451
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436234|ref|XP_004135898.1| PREDICTED: major facilitator superfamily domain-containing protein 12-like [Cucumis sativus] gi|449489100|ref|XP_004158215.1| PREDICTED: major facilitator superfamily domain-containing protein 12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 311/469 (66%), Positives = 370/469 (78%), Gaps = 42/469 (8%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M+ D E+ S+TQP+GRWS+ +G GHMLNDITAACWFTYLLLFLTDIGLSP AA VML
Sbjct: 1 MSNDDESSLSYTQPIGRWSIFCFGLGHMLNDITAACWFTYLLLFLTDIGLSPGNAATVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG----------------- 109
SGQ+ADG TIF GELIDRFGH KIWHGAGSVLVAVSFSSVFG
Sbjct: 61 SGQVADGVTTIFAGELIDRFGHLKIWHGAGSVLVAVSFSSVFGGCLPCILFSRSSSTLQT 120
Query: 110 -------------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 156
WAATQV+HMSMVNCITLNSTSRV L SCRNAF M+ANLSLYA+A +V
Sbjct: 121 VGYSFFAAIFNVGWAATQVSHMSMVNCITLNSTSRVALASCRNAFNMIANLSLYAVALLV 180
Query: 157 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 216
FS+ AK+HAD+E QYR IAY SIFIGCCFV IFL T+EP LK+ ++GN +RISW+YW
Sbjct: 181 FSIIKAKSHADIEYQYRVIAYISIFIGCCFVVIFLVGTKEPSLKVAVQGNRGSRISWSYW 240
Query: 217 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 276
FKK+LYYQVAL Y+LTRL+VNVSQA+LA+YVINDL M QSA ALVPAIIY+ SFI+S++L
Sbjct: 241 FKKVLYYQVALAYVLTRLIVNVSQAFLAYYVINDLHMAQSATALVPAIIYVFSFIISVVL 300
Query: 277 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 336
QE+ WTGQRLK YYSAGG++W+FCGA ILILP ++S FMYV++ F+GIANALMMVTG+SM
Sbjct: 301 QEVVWTGQRLKIYYSAGGIIWMFCGAVILILPSSLSTFMYVMSTFIGIANALMMVTGVSM 360
Query: 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 396
Q+VLVG DL+GCAFVCG+LSFLDK+SCG+A+Y L+S+Q SI++L V +N
Sbjct: 361 QSVLVGTDLNGCAFVCGSLSFLDKISCGLALYFLESFQ-----------SISALHVSENT 409
Query: 397 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 445
L +T YISVTR+GLGL+PA+C+ + VAVT +M L PY+K L E LL+
Sbjct: 410 PLDAT-YISVTRYGLGLVPAVCAFLGVAVTISMNLGAPYAKYLTESLLE 457
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820866|ref|XP_002878316.1| AT3g60070/T2O9_50 [Arabidopsis lyrata subsp. lyrata] gi|297324154|gb|EFH54575.1| AT3g60070/T2O9_50 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/467 (65%), Positives = 367/467 (78%), Gaps = 45/467 (9%)
Query: 12 ENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIA 71
+D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+A
Sbjct: 5 SEEDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVA 64
Query: 72 DGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG---------------------- 109
D FATIF GELIDRFGHFKIWH AGS+LVA+SFSSVFG
Sbjct: 65 DAFATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSM 124
Query: 110 --------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 161
WAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V
Sbjct: 125 FAAIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIK 184
Query: 162 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL 221
A + D E QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+K+L
Sbjct: 185 AGSKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKQTSRARIPWVYWFRKLL 244
Query: 222 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAW 281
YYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+MGQSAKALVPAIIYICSF+VS+LLQE+ W
Sbjct: 245 YYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMGQSAKALVPAIIYICSFVVSVLLQEIPW 304
Query: 282 TGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV 341
G+RLKAYY+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLV
Sbjct: 305 NGRRLKAYYTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLV 364
Query: 342 GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLIST 401
G ++ GCAFVCG+LSFLDKMSCG+A+YVLQS+Q+ SP NN++ S+
Sbjct: 365 GAEVGGCAFVCGSLSFLDKMSCGLALYVLQSHQTTSPRGQLNNNNQQSV----------- 413
Query: 402 SYISVTRFGLGLIPAICSLVSVAVTFTMKLHTP--YSKPLV-EPLLQ 445
Y+SVTR+GLGL+PA+CS V VAVTF M+L SKPL+ EPLL+
Sbjct: 414 -YLSVTRYGLGLVPALCSFVGVAVTFFMELEAAGSLSKPLLREPLLE 459
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255646539|gb|ACU23744.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 313/468 (66%), Positives = 362/468 (77%), Gaps = 47/468 (10%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG----------------- 109
SGQ+ADGF TIF+GELI RFGHFKIWHGAGS+LVA+SFSSVFG
Sbjct: 61 SGQVADGFVTIFVGELIGRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120
Query: 110 -------------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 156
WAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 157 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 216
FSV KTH D+ENQYRWIAY SIFIGCCFVG+F T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVIIGKTHDDVENQYRWIAYLSIFIGCCFVGVFRLATKEPRLKVGVHGMVHARISWGYW 240
Query: 217 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 276
FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 277 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 336
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 396
QN L+GE+L+GCAFV G+LSFLDK+SCG+A+YV QS Q++ P + + T
Sbjct: 361 QNFLIGENLNGCAFVVGSLSFLDKISCGLALYVFQSNQNLFPQL----QATTQFP----- 411
Query: 397 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 444
SVTR GLGL+PA C+LV V VT TM H P SK L PLL
Sbjct: 412 -------FSVTRIGLGLVPAFCALVGVVVTCTMDFHNP-SKSLTAPLL 451
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255671|ref|NP_191566.5| major facilitator protein [Arabidopsis thaliana] gi|21703097|gb|AAM74491.1| AT3g60070/T2O9_50 [Arabidopsis thaliana] gi|332646487|gb|AEE80008.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 307/466 (65%), Positives = 364/466 (78%), Gaps = 46/466 (9%)
Query: 13 NDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIAD 72
+D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+AD
Sbjct: 6 EEDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVAD 65
Query: 73 GFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG----------------------- 109
FATIF GELIDRFGHFKIWH AGS+LVA+SFSSVFG
Sbjct: 66 AFATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMF 125
Query: 110 -------WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 162
WAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V A
Sbjct: 126 AAIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKA 185
Query: 163 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 222
+ D E QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+KILY
Sbjct: 186 GSKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKILY 245
Query: 223 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWT 282
YQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQE+ W
Sbjct: 246 YQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQEIPWN 305
Query: 283 GQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVG 342
G+RLKAYY+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLVG
Sbjct: 306 GKRLKAYYTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLVG 365
Query: 343 EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTS 402
++ GCAFVCG+LSFLDKMSCG+A+YVLQS+Q+ SP NN+ +
Sbjct: 366 AEVGGCAFVCGSLSFLDKMSCGLALYVLQSHQTTSPRGQLNNNQ-------------QSV 412
Query: 403 YISVTRFGLGLIPAICSLVSVAVTFTMKLHTP--YSKPLV-EPLLQ 445
Y+SVTR+GLGL+PA+CS V VAVTF M+L SKPL+ EPLL+
Sbjct: 413 YLSVTRYGLGLVPALCSFVGVAVTFFMELEAAGSLSKPLLREPLLE 458
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | ||||||
| TAIR|locus:2050626 | 462 | AT2G44280 "AT2G44280" [Arabido | 0.721 | 0.694 | 0.653 | 2.1e-156 | |
| TAIR|locus:2101442 | 458 | AT3G60070 "AT3G60070" [Arabido | 0.725 | 0.705 | 0.675 | 2.7e-156 | |
| WB|WBGene00017530 | 501 | F16H11.1 [Caenorhabditis elega | 0.588 | 0.522 | 0.319 | 2.8e-42 | |
| UNIPROTKB|Q6NUT3 | 480 | MFSD12 "Major facilitator supe | 0.395 | 0.366 | 0.327 | 1.2e-41 | |
| MGI|MGI:3604804 | 476 | Mfsd12 "major facilitator supe | 0.355 | 0.331 | 0.331 | 6.5e-40 | |
| ZFIN|ZDB-GENE-030131-4642 | 507 | mfsd12a "major facilitator sup | 0.359 | 0.315 | 0.290 | 7.7e-37 | |
| TIGR_CMR|CPS_3708 | 442 | CPS_3708 "sugar:cation symport | 0.543 | 0.547 | 0.236 | 0.00026 |
| TAIR|locus:2050626 AT2G44280 "AT2G44280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 2.1e-156, Sum P(2) = 2.1e-156
Identities = 219/335 (65%), Positives = 273/335 (81%)
Query: 110 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 169
WAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LYAIA +VF VS A T + E
Sbjct: 140 WAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLYAIALVVFGVSEAVTKENTE 199
Query: 170 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY 229
+QYRWIAYSSI +GCCFV IFL T+EPRL++ LR S ARI W+YWF+KILYYQVA+VY
Sbjct: 200 SQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRARIPWSYWFRKILYYQVAMVY 259
Query: 230 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAY 289
+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF+VS++LQE+ W G+RLKAY
Sbjct: 260 LLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSFVVSVMLQEIPWNGKRLKAY 319
Query: 290 YSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCA 349
Y AGG++W+FCG IL+LP +++++MY +++F+GIANA+M+VT ISMQ+VL+G L GCA
Sbjct: 320 YCAGGIIWIFCGISILLLPRSINSYMYAISVFIGIANAVMLVTSISMQSVLIGSKLGGCA 379
Query: 350 FVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRF 409
FVCG+LSFLDKMSCG+A+YVLQS+Q SP V D N + Y SVTR+
Sbjct: 380 FVCGSLSFLDKMSCGLALYVLQSHQGTSPKV-DVN-------------IKEYFYFSVTRY 425
Query: 410 GLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 444
GLGL+PA+CSLV V VT+ M+L + KPL +PLL
Sbjct: 426 GLGLVPAVCSLVGVVVTYFMELDSTILKPLCQPLL 460
|
|
| TAIR|locus:2101442 AT3G60070 "AT3G60070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1173 (418.0 bits), Expect = 2.7e-156, Sum P(2) = 2.7e-156
Identities = 229/339 (67%), Positives = 278/339 (82%)
Query: 110 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 169
WAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V A + D E
Sbjct: 133 WAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKAGSKEDTE 192
Query: 170 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY 229
QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+KILYYQVA+VY
Sbjct: 193 TQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKILYYQVAMVY 252
Query: 230 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAY 289
+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQE+ W G+RLKAY
Sbjct: 253 LLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQEIPWNGKRLKAY 312
Query: 290 YSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCA 349
Y+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLVG ++ GCA
Sbjct: 313 YTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLVGAEVGGCA 372
Query: 350 FVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRF 409
FVCG+LSFLDKMSCG+A+YVLQS+Q+ SP L+NN + Y+SVTR+
Sbjct: 373 FVCGSLSFLDKMSCGLALYVLQSHQTTSPR-----------GQLNNNQ--QSVYLSVTRY 419
Query: 410 GLGLIPAICSLVSVAVTFTMKLHTP--YSKPLV-EPLLQ 445
GLGL+PA+CS V VAVTF M+L SKPL+ EPLL+
Sbjct: 420 GLGLVPALCSFVGVAVTFFMELEAAGSLSKPLLREPLLE 458
|
|
| WB|WBGene00017530 F16H11.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 92/288 (31%), Positives = 157/288 (54%)
Query: 110 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHA-- 166
WA+ Q++H++++ ++ SR + S R AFT++ANLS+Y A+A+++ S ST T
Sbjct: 159 WASVQISHLALIPELSSVPASRATMNSLRYAFTVIANLSVYFALAWLL-SESTGHTSIGP 217
Query: 167 -DLENQYRWIAYSSIFIGCCFVGIFLSRTEEP-RLKMGLRGNSHA-------RISWAYWF 217
D + +R + + +G +F + T EP + R NS + R+ W WF
Sbjct: 218 WDFSH-FRLAGWLVVVLGITVAFVFYAFTREPTNYRRFSRLNSFSSDASELVRMHWTSWF 276
Query: 218 KKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ 277
+ +YQ+AL+YML+RL +N+SQ Y FY+ + A++P + Y+ SF VS++
Sbjct: 277 GHVQFYQIALLYMLSRLYINISQVYFPFYITMTQNYEKKYVAILPMVAYLSSFSVSMVNS 336
Query: 278 EMAWTGQRLKAYYSAG---GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGI 334
+ K YS G G+L C +L LP +Y LA+ +GIA A++++T +
Sbjct: 337 LPVVSKLSKKILYSFGLASGML--SCAVMMLDLP---GWKIYALAVGIGIAQAILLITSL 391
Query: 335 SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ----SYQSMSP 378
S+ L+ ++ AFV G +SF DK+S GIA +++ +Y ++ P
Sbjct: 392 SITADLINKNTESGAFVYGAMSFFDKLSNGIAYQLIELWTPAYDALKP 439
|
|
| UNIPROTKB|Q6NUT3 MFSD12 "Major facilitator superfamily domain-containing protein 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 1.2e-41, Sum P(3) = 1.2e-41
Identities = 59/180 (32%), Positives = 102/180 (56%)
Query: 195 EEPRLKMGLRGNSHAR--ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 252
EEP L + A+ + W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+ L
Sbjct: 248 EEPGEHTPLLAPATAQPLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLH 307
Query: 253 MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMS 312
+ + A +P ++Y+ F+ S L++ + R Y+S G+L + A + L +
Sbjct: 308 LPKKFIATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFS--GLLVILAFAAWVALAEGLG 365
Query: 313 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372
+Y A+ +G A ++VT ++M L+G + AFV G++SFLDK++ G+AV +QS
Sbjct: 366 VAVYAAAVLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQS 425
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| MGI|MGI:3604804 Mfsd12 "major facilitator superfamily domain containing 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 6.5e-40, Sum P(3) = 6.5e-40
Identities = 53/160 (33%), Positives = 91/160 (56%)
Query: 213 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIV 272
W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+ L + + A +P ++Y+ F
Sbjct: 264 WKHWLREPAFYQVGMLYMTTRLIVNLSQTYIAMYLTYSLSLPKKFIATIPLVMYLSGFFS 323
Query: 273 SILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVT 332
S L++ + R Y++ G+L + A + L N+ +Y A+ +G A ++VT
Sbjct: 324 SFLMKPVNRRIGRNMTYFT--GLLVILAFAAWVALADNLGVAVYGAAVLLGAGCATILVT 381
Query: 333 GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372
++M L+G AFV G +SF DK++ G+AV +QS
Sbjct: 382 SLAMTADLIGPHTHSGAFVYGAMSFSDKVANGLAVMAVQS 421
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| ZFIN|ZDB-GENE-030131-4642 mfsd12a "major facilitator superfamily domain containing 12a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 7.7e-37, Sum P(3) = 7.7e-37
Identities = 47/162 (29%), Positives = 95/162 (58%)
Query: 211 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 270
+ W W + +YQVAL+YM TRL+VN+SQ Y++ Y+ L + ++ A +P ++++ F
Sbjct: 258 LHWNNWLTQPSFYQVALLYMSTRLIVNLSQTYISMYLTYTLLLPKNYIATIPLVMFLSGF 317
Query: 271 IVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMM 330
S +++ ++ + Y+ G+L + + ++L +M +Y A+ +G+ +A ++
Sbjct: 318 ASSFIMKPVSKLIGKCMTYFL--GLLLILAFSYWVLLDTHMGDKVYGAAVLLGVGSATIL 375
Query: 331 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372
V ++M L+G+ AFV G +SF DK++ G+ V ++Q+
Sbjct: 376 VMSLAMTAELIGDQTHSGAFVYGAMSFTDKVANGLGVMIIQT 417
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| TIGR_CMR|CPS_3708 CPS_3708 "sugar:cation symporter family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 91 (37.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 64/271 (23%), Positives = 120/271 (44%)
Query: 110 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 169
+ A + + + IT ++ RV + S R F M+ + + A A + +
Sbjct: 119 YTAINIPYCGLGGVITADAKERVTVQSYRFVFGMLGGV-IVAGATMPMVEWFGQGDTAKG 177
Query: 170 NQYRWIAYSSIFIGC---CFVGIFLSRTEEPRLK-MGLRGNSHARISWAYWFKKILYYQV 225
QY +A SS+ + CF+G R + P + ++ N + W +IL +
Sbjct: 178 YQYTMVAMSSLGVVLFLLCFLGT-KERVKPPENQDSSMKENLQSLWKNDQW--RILC--I 232
Query: 226 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII---YICSFIVSILLQEMAWT 282
A Y+LT V+ ++ LA Y + +G+ + L+ + + + S I + Q +A
Sbjct: 233 ASFYLLTGQVLRLT---LAVYYVKYF-LGR--EDLITSFLTLGVVASMIGCAVAQPLAKR 286
Query: 283 GQRLKAYYSAGGVLWVFCGAGILILPMNMS-AFMYVLA--IFVGIANALM---MVTGISM 336
++KAY + + V C A LI P + AF+ ++ F+ +A+ L+ M I
Sbjct: 287 VCKIKAYIALQSLSAVICLASFLISPNQIILAFVAFISWKFFLDMASPLLWAKMADTIDY 346
Query: 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV 367
+ G ++G + G + F+ KM GIA+
Sbjct: 347 GHKKTGIRVTGLVY-SGVIFFI-KM--GIAI 373
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_IX001320 | hypothetical protein (442 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 445 | |||
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 1e-45 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 5e-14 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 2e-07 | |
| PRK09848 | 448 | PRK09848, PRK09848, glucuronide transporter; Provi | 4e-06 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 1e-45
Identities = 89/448 (19%), Positives = 150/448 (33%), Gaps = 69/448 (15%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
+ YG G + N+I A TYLL F TD+ GLS + L +I D F +G +ID
Sbjct: 2 IGYGLGDLGNNIIYALLSTYLLYFYTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDR 61
Query: 85 ---RFGHFKIWHGAGSVLVAVSFSSVF------------------------GWAATQVAH 117
R+G F+ W G++ +A+S +F + + +
Sbjct: 62 TRTRWGKFRPWLLIGAIPLAISLVLLFATPFGLSMTAKLIYAFITYILLGLAYTFVNIPY 121
Query: 118 MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY 177
S++ +T + R L S R + L + IA + ++ + Y A
Sbjct: 122 WSLIPVLTRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGG---NGAKGYFLAAL 178
Query: 178 SSIFIGCCFVGIFLSRT-EEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVV 236
+ I + T E + + R + FK + L+Y+L L +
Sbjct: 179 IIAILAVVGFLICFAGTKERVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLYLLNALAM 238
Query: 237 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGG 294
V L +Y L L+ + W +R K + G
Sbjct: 239 AVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPL----WPWLAKRFGKKRTFLLGM 294
Query: 295 VLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQN--VLVGEDLSG---CA 349
+L + LP VL + GI L + +M V GE +G
Sbjct: 295 LLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREG 354
Query: 350 FVCGTLSFLDKMSCGIAVYV------LQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSY 403
SF DK+ + + Y + N + S +
Sbjct: 355 ITFSLYSFADKLGGALGGAIVGLLLAFAGYVA-------------------NATAQSAAA 395
Query: 404 ISVTRFGLGLIPAICSLVSVAVTFTMKL 431
+S R LIPA+ +L+++ + L
Sbjct: 396 LSGIRLLFTLIPAVLALLALLILRFYPL 423
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This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 5e-14
Identities = 83/461 (18%), Positives = 156/461 (33%), Gaps = 69/461 (14%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
YG G ++ YLL F TD+ GLS A + L +I D +G ++D
Sbjct: 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTR 76
Query: 85 -RFGHFKIWHGAGSVLVAVSFSSVF-----------------------GWAATQVAHMSM 120
R+G F+ W G++ A+ +F G+ + + ++
Sbjct: 77 SRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGAL 136
Query: 121 VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 180
IT + R LTS R F + L L A+ F L Y+ A
Sbjct: 137 GPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGDKAL--GYQGTALVLG 193
Query: 181 FIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQVALVYMLTRLVV 236
IG + +E ++ + ++ F I + L+ +L +
Sbjct: 194 VIGVILLLFCFFNVKERVVETQ-PTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAF 252
Query: 237 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGG 294
N+ + + +YV L + L+ + ++ ++L ++ K + G
Sbjct: 253 NIRGSIMVYYVTYVLGDPELFAYLL-LLASGAGLLIGLIL--WPRLVKKFGKKKLFLIGL 309
Query: 295 VLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV-------GEDLSG 347
+L + P + V I G+ + +M V G G
Sbjct: 310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369
Query: 348 CAFVCGTLSFLDKMSCGIAVYVLQSYQSMS---PTVLDNNSSITSLTVLDNNSLISTSYI 404
+ ++F K+ +A ++ P V ++S +
Sbjct: 370 IVY--SGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASA----------------L 411
Query: 405 SVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 445
RF ++PA+ L++ + F KL+ K ++E L Q
Sbjct: 412 FGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQ 452
|
Length = 467 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 75/331 (22%), Positives = 123/331 (37%), Gaps = 46/331 (13%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
YG G N+ A TYLL F TD+ GLS + L +I D +G ++D
Sbjct: 4 YGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTR 63
Query: 85 -RFGHFKIWHGAGSVLVAV----SFSSVFGWAATQVAHM-----------SMVNC----- 123
R+G F+ W G++ ++ F++ A ++ + S VN
Sbjct: 64 TRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSL 123
Query: 124 ---ITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 180
ITL+ R L++ R A L +A IV + + D + + A
Sbjct: 124 VPAITLDPRERESLSTFRRFG---ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180
Query: 181 FIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQVALVYMLTRLVV 236
IG + I T+E ++ N ++S FK + + L Y+ L
Sbjct: 181 LIGVVSLIICFFGTKERYSEI--PKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAF 238
Query: 237 NV---SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAG 293
N+ Q Y YV+ D + + + +I I +L + R K ++ G
Sbjct: 239 NIKNGVQVYYFTYVLGDPEL----FSYMGSIAIGAGLIGVLLFPRLVKKFGR-KILFAGG 293
Query: 294 GVLWVFCGAGILILPMNMSAFMYVLAIFVGI 324
+L V G I + + VL I G
Sbjct: 294 ILLMV-LGYLIFFFAGSNLPLILVLIILAGF 323
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The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
| >gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 56/275 (20%), Positives = 108/275 (39%), Gaps = 53/275 (19%)
Query: 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
Q + +++ Y G + N+ A +LL + TD+ G+ A ++L ++ D FA +
Sbjct: 3 QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADV 62
Query: 78 FIGELID----RFGHFK---IWHGAGSVLVAVS-FSSVFGWAATQ------VAHM----- 118
F G ++D R+G F+ ++ A ++ +V F W+ + + +M
Sbjct: 63 FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLC 122
Query: 119 -SMVN--------CITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 169
S+VN +T SR L + R + A+L+ +AF++ + ++
Sbjct: 123 YSLVNIPYGSLATAMTQQPQSRARLGAAR---GIAASLTFVCLAFLIGPSIKNSSPEEMV 179
Query: 170 NQYRWIAYSSIFIGCCFVGIFLSRTEE--------PRLKMG---LRGNSHARISWAYWFK 218
+ Y + G I T E P LK+ L+ N
Sbjct: 180 SVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNR----------P 229
Query: 219 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 253
+ AL +++ V+ S + YV+ND +
Sbjct: 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL 264
|
Length = 448 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 100.0 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 100.0 | |
| PRK11462 | 460 | putative transporter; Provisional | 100.0 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 100.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 100.0 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 100.0 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.95 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.94 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.93 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.92 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.91 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.91 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.91 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.91 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.91 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.91 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.9 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.88 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.87 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 99.86 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.85 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.84 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.83 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.83 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.83 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.8 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.79 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.79 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.78 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.77 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.76 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.73 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.67 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.66 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.64 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.62 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.61 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.61 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.57 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.52 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.5 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.43 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.43 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.4 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.39 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.38 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.29 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.17 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.15 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.12 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.09 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.08 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.08 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.07 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.07 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.06 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.03 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.03 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.02 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.0 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.99 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.97 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.97 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.94 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.94 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.91 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.9 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.9 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.89 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.86 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.86 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.86 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.85 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.85 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.84 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.84 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.83 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.83 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.83 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.82 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.82 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.82 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.81 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.8 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.8 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.8 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.8 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.8 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.78 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.78 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.77 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.77 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.76 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.75 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.75 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.75 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.75 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.75 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.75 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.75 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.73 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.72 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.72 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.72 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.71 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.71 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.7 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.69 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.68 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.68 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.68 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.67 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.66 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.66 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.64 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.64 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.57 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.57 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.56 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.56 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.55 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.54 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.54 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.52 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.51 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.5 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.47 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.47 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.46 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.46 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.45 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.45 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.42 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.39 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.39 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.39 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.31 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.3 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.3 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.25 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.22 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.22 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.19 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.19 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.15 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.12 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.03 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.02 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.01 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.99 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.99 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.96 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.92 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.85 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.85 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.82 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.82 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.69 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.69 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.61 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.53 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.53 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.5 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.38 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.38 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.19 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.1 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.04 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.91 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.9 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.66 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.62 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.62 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.59 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.54 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 96.48 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.46 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.44 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.32 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.29 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.2 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.13 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.59 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.47 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.44 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.75 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 94.44 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.03 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.86 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 93.06 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.64 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.42 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.12 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 91.9 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 91.57 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 89.49 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 89.01 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 87.74 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 84.63 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 84.28 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 82.1 |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=366.75 Aligned_cols=409 Identities=21% Similarity=0.250 Sum_probs=349.6
Q ss_pred CCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc----cCCchH
Q 013324 17 FTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKI 91 (445)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr----~Grrr~ 91 (445)
.++|++.+++++|++||++.++....+..|++.|++|. |+++..+|.+..+..+.|++.+|+.|.++|| ||||||
T Consensus 5 ~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP 84 (467)
T COG2211 5 SSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP 84 (467)
T ss_pred ccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccH
Confidence 36789999999999999999999999999999999998 9999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHH
Q 013324 92 WHGAGSVLVAVSFSSVF-----------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 148 (445)
Q Consensus 92 ~ll~~~i~~~~~~~~~~-----------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 148 (445)
|++++.+.+++...++| +|+.+++|+.++.+++++|++||.+..++++.+..+|.++
T Consensus 85 ~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l 164 (467)
T COG2211 85 WLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL 164 (467)
T ss_pred HHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccccc---CCcchHHHHHHHHhchHHHHH
Q 013324 149 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---GNSHARISWAYWFKKILYYQV 225 (445)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 225 (445)
...+.+++...+++.+ ...||+....+.++++++..+++++.+||+..+..+. .+.+.++++..++|||++...
T Consensus 165 ~~~~~~plv~~~g~~~---~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~ 241 (467)
T COG2211 165 VAVLFPPLVKLFGGGD---KALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLL 241 (467)
T ss_pred HHHHHHHHHHHhCCCc---chhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHH
Confidence 9999999988876432 3679999999999999999999999999976533221 345566677789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Q 013324 226 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 304 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~ 304 (445)
.+..++.....+......+.|.+..+|.+.............+.+++.++.+++ ++++| |+.+.++.++.+++.+.+
T Consensus 242 l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gk--k~~~~~~~~~~~i~~~~~ 319 (467)
T COG2211 242 LLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGK--KKLFLIGLLLLAVGYLLL 319 (467)
T ss_pred HHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhch--HHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888777666666666666667777754 33333 778889999999999999
Q ss_pred hhccCchhHHHHHHHHHHHHHHhHhhh-------hHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccC
Q 013324 305 LILPMNMSAFMYVLAIFVGIANALMMV-------TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS 377 (445)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~g~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~ 377 (445)
++.+.++.++.++..++.+++.+...+ +..++.+.++++|.+| ..+|.+++.+++|.++++.+.+......
T Consensus 320 ~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG--i~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 320 YFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG--IVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred HhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888877777777777888888877554 5556666678999999 9999999999999999987776655433
Q ss_pred CccccCCCcccccccccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHHHhccCCCcCchhhhhhhcC
Q 013324 378 PTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 445 (445)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 445 (445)
++.. |.++|++++.++++..+.++|+++.+++.+.+.+||+++|++++++|||.|
T Consensus 398 Gyv~-------------~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L~~~~~~~I~~eL~~ 452 (467)
T COG2211 398 GYVP-------------NVSAQSASALFGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQ 452 (467)
T ss_pred CCCC-------------CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3332 223689999999999999999999999999999999999999999999864
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=332.78 Aligned_cols=406 Identities=18% Similarity=0.192 Sum_probs=301.6
Q ss_pred CCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc----cCCchHH
Q 013324 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (445)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~ 92 (445)
+++++++++++|++|+++.+..+..+..++++|++|. |++++++|.+.++..+++++.+|+.|+++|| +||||+|
T Consensus 3 ~~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~ 82 (444)
T PRK09669 3 TSQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPY 82 (444)
T ss_pred CCcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchh
Confidence 4678999999999999999999999999999999998 9999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHH-----------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHH
Q 013324 93 HGAGSVLVAVSFSSVF-----------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 149 (445)
Q Consensus 93 ll~~~i~~~~~~~~~~-----------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 149 (445)
++.+.+..+++..+.+ .++..++|+.++.++++++++||.+..+++..+..+|..++
T Consensus 83 il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~ 162 (444)
T PRK09669 83 LLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIV 162 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887776665554433 56678899999999999989999999999999999999888
Q ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHH
Q 013324 150 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY 229 (445)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (445)
+.+..++...++.. +...+|+..+.+.++++++..+..++..||++.++ ++++.+.++++++++|||+++.+....
T Consensus 163 ~~~~~pl~~~~~~~---~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~n~~~~~l~~~~ 238 (444)
T PRK09669 163 SVIALPLVDILGKG---DEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-VDNSSSVWKDLKLLLGNSQWRIMFIFN 238 (444)
T ss_pred HHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-CcCCCCHHHHHHHHhCCchHHHHHHHH
Confidence 88777777655321 23578999888888888777767777778754332 233445677889999999998877766
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 013324 230 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP 308 (445)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (445)
++............+.|.+...+.. ...+.+.....+..+++.++.+++ +|.++ |+.+..+.++..+..+.+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk--~~~~~~~~~~~~~~~~~~~~~~ 315 (444)
T PRK09669 239 VVLLTAVVTRGGATLYYVNYVLLRP-DLATLFLVTGMIAGLFGALLSERLLGKFDR--VRAFKWTIVAFVILSALIFFIP 315 (444)
T ss_pred HHHHHHHHHHhhhhheeeeeecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHhC
Confidence 6555544443343444444333332 222333344445566666666643 33322 4555555554444334334444
Q ss_pred CchhHHHHHHHHHHHHHHhHhhhhHhhhccc-------ccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCccc
Q 013324 309 MNMSAFMYVLAIFVGIANALMMVTGISMQNV-------LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVL 381 (445)
Q Consensus 309 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~~~ 381 (445)
+++.+..++..++.|++.+...+...++..+ .+++|.+| ..+|.+++..++|.++|+.+.+.+....++.
T Consensus 316 ~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g--~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~- 392 (444)
T PRK09669 316 PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG--LVFSTNLFAIKLGLAIGGAVVGWILAWVDYV- 392 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 4566666666778888888876655555443 34566667 8999999999999988877666554333332
Q ss_pred cCCCcccccccccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHHHhccCCCcCchhhhhhhcC
Q 013324 382 DNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 445 (445)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 445 (445)
+++++|++.+.++++..+..+|+++.+++++++++||+++|+++++++||..
T Consensus 393 ------------~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~ 444 (444)
T PRK09669 393 ------------GGAAVQSASVLTTINLLFTVIPGVLFAGMAIILNFYKLNDARVEAIAQELVK 444 (444)
T ss_pred ------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhC
Confidence 1234689999999999999999999999999999999999999999999863
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=328.36 Aligned_cols=402 Identities=16% Similarity=0.214 Sum_probs=293.6
Q ss_pred CCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc----cCCchHH
Q 013324 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (445)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~ 92 (445)
+++++++++++|++|+++.+..+..+..|++.|++|. |+++..+|.+..+..++|++.+|+.|.++|| +||||||
T Consensus 3 ~~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~ 82 (460)
T PRK11462 3 SEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPW 82 (460)
T ss_pred CCcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchh
Confidence 3578999999999999999999999999999999998 9999999999999999999999999999996 8999999
Q ss_pred HHHHHHHHHHHHHHHH-----------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHH
Q 013324 93 HGAGSVLVAVSFSSVF-----------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 149 (445)
Q Consensus 93 ll~~~i~~~~~~~~~~-----------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 149 (445)
++++.++.+++..++| +|+..++|+.++.+++++|++||.++.+++..+..+|..++
T Consensus 83 il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~ 162 (460)
T PRK11462 83 VLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLS 162 (460)
T ss_pred HhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887776665 67789999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHH
Q 013324 150 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY 229 (445)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (445)
+.+..++....++. +...+|+....+.++++++...+.+...||+++++ +++.+.++.++..+|||+++.+....
T Consensus 163 ~~~~~plv~~~g~~---~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~--~~~~~~~~~l~~~~~Nk~~~~l~~~~ 237 (460)
T PRK11462 163 TVLMMPLVNLIGGD---NKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP--PTTTSMREDLRDIWQNDQWRIVGLLT 237 (460)
T ss_pred HHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC--ccCCCHHHHHHHHhCChHHHHHHHHH
Confidence 88877777654321 23468888888887877777767767778854322 23345677889999999988776554
Q ss_pred HHHHHH---HHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 013324 230 MLTRLV---VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILI 306 (445)
Q Consensus 230 ~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 306 (445)
++.... ..+...|+..|. .|... ..+.+.....++.+++.++.+++.++.+| |+....+..+..+....+.+
T Consensus 238 ~~~~~~~~~~~~~~~y~~~y~---~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gk-k~~~~~~~~~~~~~~~~~~~ 312 (460)
T PRK11462 238 IFNILAVCVRGGAMMYYVTWI---LGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCK-VTIFWWTNALLAVISLAMFF 312 (460)
T ss_pred HHHHHHHHHHHhHhhhhhhhh---cCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHH
Confidence 444433 334445555554 33322 22344455566777777777754222221 34333333333332333333
Q ss_pred ccCchhHHHHHHHHHHHHHHhHhh-------hhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCc
Q 013324 307 LPMNMSAFMYVLAIFVGIANALMM-------VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPT 379 (445)
Q Consensus 307 ~~~~~~~~~~~~~~l~g~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~ 379 (445)
.+..+.+..++..++.|++.+... ++..++.+.++++|++| ..++.+++..++|.++++.+.+......++
T Consensus 313 ~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g--~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 313 VPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG--ISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333333333444455566554433 34444455557788888 888888999999999887766554432232
Q ss_pred cccCCCcccccccccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHH-HhccCCCcCchhhhhhhc
Q 013324 380 VLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVT-FTMKLHTPYSKPLVEPLL 444 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~ 444 (445)
.. +++.|++...+++...+.++|+++.+++.+++ ++||+++++++|+++||+
T Consensus 391 ~~-------------~~~~q~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~ 443 (460)
T PRK11462 391 DA-------------AEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLA 443 (460)
T ss_pred CC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 21 23468888899999999999999999998887 578999999999999885
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=328.49 Aligned_cols=403 Identities=15% Similarity=0.205 Sum_probs=299.1
Q ss_pred CCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhh----ccCCchHHHH
Q 013324 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHG 94 (445)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~D----r~Grrr~~ll 94 (445)
|++.+++++|++|+++.++.+..+.+|++.|++|. |+++.++|.+..+..+.+++.+|++|+++| ||||||+|++
T Consensus 2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 56789999999999999999999999999999998 999999999999999999999999999999 6799999999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHH
Q 013324 95 AGSVLVAVSFSSVF-----------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 151 (445)
Q Consensus 95 ~~~i~~~~~~~~~~-----------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 151 (445)
.+.+..+++..+++ +++..++|+.++.+++++|++||.+..+++..+..+|..+.+.
T Consensus 82 ~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~ 161 (473)
T PRK10429 82 IGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG 161 (473)
T ss_pred hhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776654443 5667889999999999999999999999988888888777666
Q ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc----cccCCcchHHHHHHHHhchHHHHHHH
Q 013324 152 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM----GLRGNSHARISWAYWFKKILYYQVAL 227 (445)
Q Consensus 152 ~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (445)
+..++....+.. +...+|++...+.+++.++..+..++..||+..++ +++++.+.++.++.++|||+++.+.+
T Consensus 162 ~~~~~~~~~g~~---~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~ 238 (473)
T PRK10429 162 FTLPFVNYVGGG---DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLG 238 (473)
T ss_pred HHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHH
Confidence 666665443321 23457888888777777777777777788863221 11234456778888889999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 013324 228 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI 306 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~ 306 (445)
..++.+........+.+.|.+...+ +....+.+.....+..+++.++.+++ +|+++ |+.+.++..+.+++.+....
T Consensus 239 ~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk--k~~~~~~~~~~~~~~~~~~~ 315 (473)
T PRK10429 239 MALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSR--RILWAGASIFPVLSCGVLLL 315 (473)
T ss_pred HHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHH
Confidence 7777776666666666655554444 33334445555556667777776654 23333 55556566554544443332
Q ss_pred ---ccCchhHHHHHHHHHHHHHHhHhhhhHhhhcc-------cccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 307 ---LPMNMSAFMYVLAIFVGIANALMMVTGISMQN-------VLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 307 ---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
..+++.+..++..++.|++.+...+...++.. .++++|++| ..+|.+++..++|.++++.+.+.+...
T Consensus 316 ~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G--~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 316 MGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCES--IAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred HhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345566566667777777776654444433 346677777 999999999999999988776665433
Q ss_pred CCccccCCCcccccccccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHH-HhccCCCcCchhhhhhhc
Q 013324 377 SPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVT-FTMKLHTPYSKPLVEPLL 444 (445)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~ 444 (445)
.++. .++.|++.+.++++..+.++|+++.+++.+++ ++||+++++++++++||.
T Consensus 394 ~Gy~--------------~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~ 448 (473)
T PRK10429 394 IGYV--------------PNVEQSAQTLLGMQFIMIGLPTLFFMITLVLYFRYYRLNGDFLRRIQIHLL 448 (473)
T ss_pred cCCC--------------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCCHHHHHHHHHHHH
Confidence 3322 13468999999999999999999999988876 689999999999988874
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=315.06 Aligned_cols=397 Identities=21% Similarity=0.283 Sum_probs=298.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc----cCCchHHHHHHHHHH
Q 013324 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVLV 100 (445)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~ll~~~i~~ 100 (445)
+++|++|+++.+..+.++.+++++|++|. |++++++|.+.++..+.+++.+|+.|+++|| +||||+|++.+.+..
T Consensus 1 ~~~yg~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~ 80 (437)
T TIGR00792 1 KLSYGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF 80 (437)
T ss_pred CeeeecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH
Confidence 35799999999999999999999999987 9999999999999999999999999999997 799999998877766
Q ss_pred HHHHHHHH-----------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 013324 101 AVSFSSVF-----------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 101 ~~~~~~~~-----------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 157 (445)
+++..+++ +++..++|+.++.++++++++||+++.++++.+..+|.++++.+.+++.
T Consensus 81 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~ 160 (437)
T TIGR00792 81 SIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV 160 (437)
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544432 3445677889999999888899999999999998899888887777776
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc-c-ccCCcchHHHHHHHHhchHHHHHHHHHHHHHHH
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-G-LRGNSHARISWAYWFKKILYYQVALVYMLTRLV 235 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
...+.. ++..+||+.+.+.++++++..++.++.+||++++. + ++++.+.++.+++++|||+++...+..++....
T Consensus 161 ~~~~~~---~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (437)
T TIGR00792 161 SYFGGG---DDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLA 237 (437)
T ss_pred HHhCCC---cccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 543311 13568999998888888887777777778865321 1 122335667788999999998877777776666
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHH
Q 013324 236 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAF 314 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (445)
......+.+.|.+...+ ++...+.+.....++.+++.++.+++ +|+++ |+.+..+..+.+++.+...+.+ ++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 313 (437)
T TIGR00792 238 FNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGR--KILFAGGILLMVLGYLIFFFAG-SNLPL 313 (437)
T ss_pred HHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHcc-hhHHH
Confidence 66555555666655555 33444555555667777777777754 33332 5666777777666665555433 34455
Q ss_pred HHHHHHHHHHHHhHhhhhHhhhcccc-------cccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCccccCCCcc
Q 013324 315 MYVLAIFVGIANALMMVTGISMQNVL-------VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSI 387 (445)
Q Consensus 315 ~~~~~~l~g~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~~~~~~~~~ 387 (445)
..+..++.|++.+...+...++..+. +++|++| .++|++++..++|.++++.+.+.+....++.
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~------- 384 (437)
T TIGR00792 314 ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG--LVYSVRTFVRKLGQALAGFLVGLILGIIGYV------- 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------
Confidence 55666777888877766555554433 4566777 8999999999999998888777654333322
Q ss_pred cccccccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHHH-hccCCCcCchhhhhhhcC
Q 013324 388 TSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTF-TMKLHTPYSKPLVEPLLQ 445 (445)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~ 445 (445)
.++.|++.+.++++..+..+|+++.+++++.+. +||++||+++++++|+++
T Consensus 385 -------~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~~i~~~l~~ 436 (437)
T TIGR00792 385 -------ANAAQSPITLNGIKILMFAVPALFLLLAAIIIGRFYKLTEKKHAEIVEELEQ 436 (437)
T ss_pred -------cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCcHHHHHHHHHHHhc
Confidence 123578888999999999999999999999996 999999999999999863
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=306.12 Aligned_cols=403 Identities=17% Similarity=0.206 Sum_probs=288.9
Q ss_pred CCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc----cCCchHH
Q 013324 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (445)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~ 92 (445)
.+|++++++++|++++++.++....+.+|++.|++|. |+++.++|.+.++..+.+++.+|+.|+++|| +||||+|
T Consensus 2 ~~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~ 81 (448)
T PRK09848 2 NQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF 81 (448)
T ss_pred CCcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence 3578899999999999999999999999999999998 9999999999999999999999999999998 4999998
Q ss_pred HHHHHHHHHHHHHHHH------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHH
Q 013324 93 HGAGSVLVAVSFSSVF------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 148 (445)
Q Consensus 93 ll~~~i~~~~~~~~~~------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 148 (445)
++.+.+...+...+++ +++..++|+.++..+++.+++||.+..+++..+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~ 161 (448)
T PRK09848 82 LLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVC 161 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7665553333222211 5667788999999999998899999999988776665443
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHH
Q 013324 149 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALV 228 (445)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (445)
.....++++...... +...+|.....+.++++++..++.....||+..++ +++.+.++.+++++|||+++...+.
T Consensus 162 ~~~~~~p~i~~~~g~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~l~~n~~f~~~~~~ 236 (448)
T PRK09848 162 LAFLIGPSIKNSSPE---EMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI--VAQPSLKISLQTLKRNRPLFMLCIG 236 (448)
T ss_pred HHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC--ccCCCHHHHHHHHhCCchHHHHHHH
Confidence 333333443322110 01123322223444555555555556667753322 2233566778899999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhh
Q 013324 229 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILI 306 (445)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~ 306 (445)
.++............|.|+++..|.++...++......++.+++.++.++ +.||+ |+.+.++..+.+++.+.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---l~~r~g~~~~~~~g~~~~~i~~~~~~~ 313 (448)
T PRK09848 237 ALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPG---MVARIGKKNTFLIGALLGTCGYLLFFW 313 (448)
T ss_pred HHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776777778888878877654444333334455666666664 44444 66777787777777666655
Q ss_pred ccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccc-------cccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCc
Q 013324 307 LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL-------VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPT 379 (445)
Q Consensus 307 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~ 379 (445)
.+.++.|..+...++.|+|.+...+...++..+. +++|++| ..+|++++.+++|.++|+.+.+.+....++
T Consensus 314 ~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G--~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 314 VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG--LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4434556656666778888888776555554443 4455667 999999999999999998877665433232
Q ss_pred cccCCCcccccccccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHHHhccCCCcCchhhhhhhc
Q 013324 380 VLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 444 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 444 (445)
. .++.|++.+.++++..+.++|+++.+++.+++++||++||+++++++|++
T Consensus 392 ~--------------~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~~~~~l~ 442 (448)
T PRK09848 392 I--------------ANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEID 442 (448)
T ss_pred C--------------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCCHHHHHHHHHHHH
Confidence 2 12347899999999999999999999999999999999999999988875
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=313.97 Aligned_cols=389 Identities=24% Similarity=0.320 Sum_probs=312.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhh----ccCCchHHHHHHHHH
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL 99 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~D----r~Grrr~~ll~~~i~ 99 (445)
++.+|++|+++.++.++....++++|++|. |+++..+|.+..+..+.+++.+|+.|.++| |+||||||++.+.++
T Consensus 2 ~~~ay~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~ 81 (428)
T PF13347_consen 2 KKLAYGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL 81 (428)
T ss_pred cEEEeeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH
Confidence 345699999999999999999999999998 999999999999999999999999999999 799999999988888
Q ss_pred HHHHHHHHH-------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHH
Q 013324 100 VAVSFSSVF-------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 154 (445)
Q Consensus 100 ~~~~~~~~~-------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 154 (445)
.+++..+++ +++..++|+.++.+|+++|++||.+..+++..+..+|.++.+.+.+
T Consensus 82 ~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~ 161 (428)
T PF13347_consen 82 LALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP 161 (428)
T ss_pred HHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 887766655 5667889999999999999999999999999999999987787777
Q ss_pred HHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccc-ccccccCCcchHHHHHHHHhchHHHHHHHHHHHHH
Q 013324 155 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR-LKMGLRGNSHARISWAYWFKKILYYQVALVYMLTR 233 (445)
Q Consensus 155 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (445)
++...+++.. ...+|++...+.++++++..++..+.+||++ +.++++++.+.++.+++++|||+++.+.+..++.+
T Consensus 162 ~l~~~~g~~~---~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~ 238 (428)
T PF13347_consen 162 ILVSWFGGGD---TSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQW 238 (428)
T ss_pred hhhhhhccCc---cchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHH
Confidence 7776554321 1248999999999999998888888899932 22333445567788899999999999888888888
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhH
Q 013324 234 LVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSA 313 (445)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (445)
..........+.|.++..|.+. ..+.+.....++.+++.++.+++.|+.+| |+.+..+.++.+++.+.+.+.+.++.+
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGK-KKVYIIGLLLAALGFLLLFFLGPGSPW 316 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccc-eeehhhhHHHHHHHHHHHHHHHhhhHH
Confidence 8777777778888887777773 34555556667777777777754222222 667888888888887777776556778
Q ss_pred HHHHHHHHHHHHHhHhhhhHhhh-------cccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCccccCCCc
Q 013324 314 FMYVLAIFVGIANALMMVTGISM-------QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSS 386 (445)
Q Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~~~~~~~~ 386 (445)
..++..++.|++.+..++...++ .+.++++|++| +.+|++++..+++.++++.+.+.+....++..
T Consensus 317 ~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g--~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~----- 389 (428)
T PF13347_consen 317 LVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG--MYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA----- 389 (428)
T ss_pred HHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH--HHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC-----
Confidence 88888889999998876544444 33445667777 99999999999999999887776654434332
Q ss_pred ccccccccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHHHhccCCC
Q 013324 387 ITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHT 433 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 433 (445)
|.++|+++..++++..+..+|+++.+++++.+++||++|
T Consensus 390 --------~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l~~ 428 (428)
T PF13347_consen 390 --------NAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPLTR 428 (428)
T ss_pred --------CcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 224789999999999999999999999999999999875
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=247.00 Aligned_cols=388 Identities=14% Similarity=0.071 Sum_probs=255.1
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
.+..+...++.+...+....+++.+|.+.+|+|.++.+.|++.+.+.+...++.|+.|+++||+||||+++. +.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~-~~~~~~~ 87 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT-AIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH-HHHHHHH
Confidence 445667778888888888899999999999999999999999999999999999999999999999998554 3333333
Q ss_pred HHHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013324 103 SFSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 165 (445)
Q Consensus 103 ~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 165 (445)
+...+. +.+.......+.+.+..+ +++|++..+.......+|..+++.+++.+.+
T Consensus 88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~------- 159 (471)
T PRK10504 88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVP-REQYMAAMTFVTLPGQVGPLLGPALGGLLVE------- 159 (471)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-------
Confidence 332211 122222233445556554 6778888888888888888888887777653
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccccccccccccc---------------------CCc-----------------
Q 013324 166 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---------------------GNS----------------- 207 (445)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~---------------------~~~----------------- 207 (445)
..+||+.|.+......+..+......++++.++.+. .+.
T Consensus 160 ---~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (471)
T PRK10504 160 ---YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVV 236 (471)
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHH
Confidence 458999988766655555544443333322111000 000
Q ss_pred -------------chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHH
Q 013324 208 -------------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSI 274 (445)
Q Consensus 208 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~ 274 (445)
+...+ .+++|||+++......++..........+.|.|++...|.++...++......++.+++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 315 (471)
T PRK10504 237 ALLLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKR 315 (471)
T ss_pred HHHHHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00001 2468899988877777777777666677888888887899988888777766666666666
Q ss_pred HHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhH
Q 013324 275 LLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFV 351 (445)
Q Consensus 275 l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 351 (445)
+.++ +.||+ |+.+..+..+..+....+.+.+ .++.+......++.|++.+...+....+..+..|+|.+| ..
T Consensus 316 ~~~~---l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~ 390 (471)
T PRK10504 316 IVVQ---VVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLAS--SG 390 (471)
T ss_pred HHHH---HHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhcc--ch
Confidence 6664 34444 5566666666665555554433 223333344455677777777777777777778888888 88
Q ss_pred HhHHHHHHHHHHHHHHHHHHHccccCCccccCCCcccccccccCCCCCCHhHHHHHHHHHhHHh-HHHHHHHHHHHHhcc
Q 013324 352 CGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIP-AICSLVSVAVTFTMK 430 (445)
Q Consensus 352 ~~~~~~~~~ig~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~~ 430 (445)
+++.++.+++|.++|+.+.+.+....++.. .+.|++..... ..+.++| +++.+++.+.+.+++
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~~~--------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 454 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQQH--------------VSVDSGATHTV--FMYTYLCMALIIALPALIFARVP 454 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------------cccccccchhH--HHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999998888877665543222211 01122333233 3333444 556666666667777
Q ss_pred CCCcCchhhhhhhc
Q 013324 431 LHTPYSKPLVEPLL 444 (445)
Q Consensus 431 ~~~~~~~~~~~~l~ 444 (445)
.++++++++++|++
T Consensus 455 ~~~~~~~~~~~~~~ 468 (471)
T PRK10504 455 NDTHQNVAISRRKR 468 (471)
T ss_pred cchhhhhccccccc
Confidence 77666666666654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=222.52 Aligned_cols=338 Identities=11% Similarity=-0.008 Sum_probs=249.7
Q ss_pred CCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHH
Q 013324 17 FTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG 96 (445)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~ 96 (445)
++++..+...+..+++.|..........+.+|...+|+|.|..++|+++++|.+..+++.|+...+.||+.|||. ++..
T Consensus 6 ~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-Ll~~ 84 (394)
T COG2814 6 TARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-LLGL 84 (394)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHHH
Confidence 356667788899999999999999999999999999999999999999999999999999999999999999887 5555
Q ss_pred HHHHHHHHHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013324 97 SVLVAVSFSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 159 (445)
Q Consensus 97 ~i~~~~~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 159 (445)
..+++++...+. ..+.+..-..++..++.+ +++|+++.+....+..++.+++..++..+-
T Consensus 85 l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvp-p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig-- 161 (394)
T COG2814 85 LALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVP-PGKRGRALALVFTGLTLATVLGVPLGTFLG-- 161 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ccchhhHHHHHHHHHHHHHHHhccHHHHHH--
Confidence 666666655543 111222222345566665 889999999988887777777665555543
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 013324 160 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 239 (445)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (445)
+..|||+.|.+.+.++++..+..+...| |+..+ ++++....+..+++|+|+.+...+..++...+++..
T Consensus 162 --------~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~--~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ 230 (394)
T COG2814 162 --------QLFGWRATFLAIAVLALLALLLLWKLLP-PSEIS--GSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFAL 230 (394)
T ss_pred --------HHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCC--CCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhh
Confidence 4689999999999999999888877777 22111 112122333467899999999999999999999999
Q ss_pred HHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHhhccCchhHHHHHH
Q 013324 240 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMNMSAFMYVL 318 (445)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (445)
.+|.-+++++..|+++...++....++++.++|..+.|+ +.||. ++.+.....+.++..+.+.+.. ++.+...+.
T Consensus 231 ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr---l~dr~~~~~l~~~~~l~a~~~l~l~~~~-~~~~~~~~~ 306 (394)
T COG2814 231 YTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR---LADRGPRRALIAALLLLALALLALTFTG-ASPALALAL 306 (394)
T ss_pred HHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhh---hccccchhHHHHHHHHHHHHHHHHHHhc-chHHHHHHH
Confidence 999999999999999999999999999999999999985 44444 6666777677776666666554 455666666
Q ss_pred HHHHHHHHhHhhhhHhhhccccccccccc--chhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 319 AIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..++|+.........+....+. .+|+++ .+...+.+|++..+|..+|+.+.+..+
T Consensus 307 ~~~wg~a~~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g 363 (394)
T COG2814 307 LFLWGFAFSPALQGLQTRLARL-APDAADLAGSLNVAAFNLGIALGAALGGLVLDALG 363 (394)
T ss_pred HHHHHHHhhhhhhHHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6667776665444333333332 234444 245555566666666666677766654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-27 Score=228.65 Aligned_cols=330 Identities=13% Similarity=0.019 Sum_probs=220.8
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
+|...+...+..+..........+.+|.+.+|+|.|++++|++.+.+.+...+.+++.|+++||+||||++.. +.+...
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~ 85 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIG-LFVLFI 85 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH-HHHHHH
Confidence 4555666666666654444455566788888889999999999999999999999999999999999998554 444444
Q ss_pred HHHHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 102 VSFSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 102 ~~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
++...+. +.+.......+++.+..+ ++||+++.++...+..+|..+++.+++.+.+
T Consensus 86 ~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~------ 158 (390)
T PRK03545 86 ASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAP-AGKKAQALSLLATGTALAMVLGLPLGRVIGQ------ 158 (390)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH------
Confidence 4433322 111222334456677665 7889999999999888888888877766542
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 244 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
..+||+.+.+.++++++..+..++..||+++++ ++..++.++.+|||+++......++..........+.+
T Consensus 159 ----~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (390)
T PRK03545 159 ----YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH-----SGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIE 229 (390)
T ss_pred ----HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-----cchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998888877766555544455532211 11234567889999887665555555555555567888
Q ss_pred HHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 013324 245 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVG 323 (445)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 323 (445)
+|+++..|.+....+.......++.+++++..++ +.||+ ++.+..+..+...+....... .++.+...+..++.|
T Consensus 230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~---l~dr~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~g 305 (390)
T PRK03545 230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSR---LGNRHPSGFLLIAIALLLVCLLLLLPA-ANSEWHLSVLSIFWG 305 (390)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH---HhhccchhHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence 8988888998888888777777888888888774 44554 344444444444443333222 235555566677788
Q ss_pred HHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 324 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
++.+...+.......+..| +++| .+.|.++....+|..+|+.+.+.+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~g~~~G~~~~G~~~~ 354 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATD--VAMALFSGIFNIGIGAGALLGNQVSL 354 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776554444445444444 4566 66777777777777777777666553
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=220.73 Aligned_cols=331 Identities=16% Similarity=0.097 Sum_probs=233.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 013324 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (445)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~ 108 (445)
+..+.+...+........+|.|..|.+.++.++|++.+++.+...+.+|+.|+++||+||||+++....+.........+
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 34566777787888888999999999999999999999999999999999999999999999865433322211111100
Q ss_pred ---------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 013324 109 ---------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 167 (445)
Q Consensus 109 ---------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 167 (445)
+.+....+..+++.|..+ +++|++..++...+..+|.++++.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--------- 153 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVP-EEQLTQANSLSQAVRSLFYIVGPGIGGLMYA--------- 153 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 233344556677788875 6789999999999999999999888877753
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc-ccccccccccccCC----cchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-H
Q 013324 168 LENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKMGLRGN----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ-A 241 (445)
Q Consensus 168 ~~~g~~~~~~~~~~~~~i~~~~~~~-~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 241 (445)
..+||+.+.+.++..++..+.... ..||++++++++.+ ++.++.+++++|||.++...+..++......... .
T Consensus 154 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (365)
T TIGR00900 154 -TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVA 232 (365)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999887766655544433322 22332221111111 1234456778899988877766666655555554 7
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIF 321 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (445)
+.|.|.++..|.++.+.+.......++.+++.++.+++.++.+| |+.+..+..+..++.....+.+. +.+...+..++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 310 (365)
T TIGR00900 233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKR-MALMTGAIFVIGLAILVVGLTPP-NFPLFLVLWFA 310 (365)
T ss_pred HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHH
Confidence 78888887788988888888888888888888887754333222 44555555555555444444332 35666677788
Q ss_pred HHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 322 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.|++.+...+....+..+..|++++| ...|+.+....++..+++.+.+.+.
T Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 311 IGVGYGPINVPQGTLLQRRVPAELLG--RVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888888888888999988 8888888888888888888777654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=218.51 Aligned_cols=329 Identities=12% Similarity=-0.014 Sum_probs=212.5
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
.|+.......+.+..........+.+|.+.+|+|.|++++|+..+++.+...+++|+.|+++||+||||.++.. .+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~-~~~~~ 96 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF-AVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH-HHHHH
Confidence 44555555555555544444555678888888899999999999999999999999999999999999985543 33344
Q ss_pred HHHHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 102 VSFSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 102 ~~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
++..... +.+.......+++.+..+ +++|+++.+....+..+|.++++.+++.+.+
T Consensus 97 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~------ 169 (394)
T PRK10213 97 LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVP-PRTVPKALSVIFGAVSIALVIAAPLGSFLGE------ 169 (394)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 3333221 222233444566677765 7789999999988888898888888877653
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 244 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
..+||+.+.+.++++++..++.....||++.++ ++.++..++.+|+|+++...+..++..........+.+
T Consensus 170 ----~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T PRK10213 170 ----LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP-----SHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIR 240 (394)
T ss_pred ----hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccc-----ccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998877776665544444456532211 11223346778999888765555554445555566775
Q ss_pred HHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 013324 245 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVG 323 (445)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 323 (445)
+++.++.|+++...+......+++.+++.++.++ +.||. |+....+..+..+..+.+... .++.+......++.|
T Consensus 241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~---l~~r~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~G 316 (394)
T PRK10213 241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSF---ILKRSVKLALAGAPLVLAVSALVLTLW-GSDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH---HHhccchhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHH
Confidence 5555667999888788777778888888887774 34443 443333333333332222222 235566666778889
Q ss_pred HHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 324 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.+...+......++..|+ +.+ ...+.......+|..+|+.+.+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~lg~~~G~~l~G~l~ 364 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLAD-QAE--KAGSIQVAVIQLANTCGAAIGGYAL 364 (394)
T ss_pred HHHHhhhHHHHHHHHHHCcc-cHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887777666666653 333 3334444444455555555555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=227.46 Aligned_cols=333 Identities=8% Similarity=-0.029 Sum_probs=225.7
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~ 103 (445)
++...+....+...+...+....+|.+..|.+.++.+.|++.+.+.+...+.+|+.|+++||+||||.++. +.+...++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~-~~~~~~~~ 95 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL-ARGTCGLG 95 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe-hHHHHHHH
Confidence 33444555677778888888889999999998899999999999999999999999999999999997543 22211111
Q ss_pred HHH--------------HH--------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013324 104 FSS--------------VF--------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 161 (445)
Q Consensus 104 ~~~--------------~~--------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 161 (445)
... .. +.+....+..+.+.+..+ +++|+++.++......+|..+++.+++.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~--- 171 (417)
T PRK10489 96 FIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVG-RENLMQAGAITMLTVRLGSVISPALGGLLIA--- 171 (417)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Confidence 110 00 112233344556667665 6778999999888888898888888877653
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccccc--CCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 013324 162 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 239 (445)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (445)
..+|+|.+.+.++..++..+.. +..||++.+++++ ..++.++.++.++|+|.++...+..++... ....
T Consensus 172 -------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (417)
T PRK10489 172 -------AGGVAWNYGLAAAGTFITLLPL-LRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAV 242 (417)
T ss_pred -------HHhhHHHHHHHHHHHHHHHHHH-HhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhH
Confidence 3578888776655555444333 3345432221111 112234456677888887655544433322 3456
Q ss_pred HHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 013324 240 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 319 (445)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (445)
..++|.|.++..|.++...+.+.....++.+++.++.+++.++.+ .++.+..+.++..++...+.+. ++.+...+..
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 319 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSAR-PGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCL 319 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccC-cchHHHHHHHHHHHHHHHHHcc--chHHHHHHHH
Confidence 778899998878999888888888888888888888775433222 1445566666555554444332 3445555666
Q ss_pred HHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 320 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
++.|++.+...+...++.++..|++.+| ..+|+++....+|..+|+.+.+.+.+
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 320 ALFGYLSAISSLLQYTLLQTQTPDEMLG--RINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 7788888777676677888888888888 88888888888888888888877764
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-26 Score=221.69 Aligned_cols=332 Identities=11% Similarity=0.034 Sum_probs=221.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~ 106 (445)
....++.+..........+.+|.+.+|+|.|+.+.++..+.+.+...+.+++.|+++||+||||.+++ +.....++...
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~-~~~~~~~~~~~ 94 (406)
T PRK15402 16 LCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLA-GVAFFILTCLA 94 (406)
T ss_pred HHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH-HHHHHHHHHHH
Confidence 44556666666667777778888888889999999999999999999999999999999999997544 44444433332
Q ss_pred HH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Q 013324 107 VF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 169 (445)
Q Consensus 107 ~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 169 (445)
.. +.+.......+.+.|..+ +++|.+..+.......++..+++.+++.+.+ .
T Consensus 95 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~----------~ 163 (406)
T PRK15402 95 ILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFE-EADAIKITALMANVALLAPLLGPLVGAALIH----------V 163 (406)
T ss_pred HHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------c
Confidence 22 111112223344455553 5667777777666666677777766665542 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccccccccc-CCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 170 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 248 (445)
Q Consensus 170 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (445)
.+||+.+.+.+++.++..+..++..||++.+++++ +.++..+++++++|||+++...+...+..........+.|.+++
T Consensus 164 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 243 (406)
T PRK15402 164 LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILI 243 (406)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57999988777777666555545556643322111 11234566788899999887766655555555556667888888
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhc---cCchhHHHHHHHHHHH
Q 013324 249 NDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILIL---PMNMSAFMYVLAIFVG 323 (445)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g 323 (445)
+..|.++.+.+.......++.+++.++.+++ .||+ |+.+..+.++..++...+... ..++.++..+..++.|
T Consensus 244 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l---~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (406)
T PRK15402 244 SGEQLSSYEYGLLQVPVFGALIAGNLTLARL---TSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYA 320 (406)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 8889988877776666666777777777754 3333 555666666555554444332 1234455566677888
Q ss_pred HHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 324 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
++.+...+........ .+++++| ..++.+++.+.+|..+|+.+.+.+...
T Consensus 321 ~g~~~~~~~~~~~~~~-~~~~~~g--~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 321 FGIGLANAGLYRLTLF-SSDVSKG--TVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHHhhhHHHHHhh-hcccccc--HHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 8888766654444332 3447778 899999999999999999998887643
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=226.91 Aligned_cols=336 Identities=11% Similarity=0.027 Sum_probs=211.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~ 106 (445)
+...++.+...+.......++|.+.+++|.|+++.|++.+++.+...+++++.|+++||+|||+.+. .+.+...++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~-~~~~~~~~~~~~ 104 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMG-IGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHH-HHHHHHHHHHHH
Confidence 3344555555555556677889999999999999999999999999999999999999999998744 444444444333
Q ss_pred H-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Q 013324 107 V-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 169 (445)
Q Consensus 107 ~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 169 (445)
. + +.+....+..+++.+..+ +++|+++.++.+.+..+|..+++.+.+.+.. .
T Consensus 105 ~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~----------~ 173 (434)
T PRK11663 105 FGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYS-RTERGGWWAIWNTAHNVGGALIPLVVGAIAL----------H 173 (434)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------c
Confidence 2 1 111122334455666664 6789999999998888898888877766642 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccccc---c-----c------cC----CcchHHHHH-HHHhchHHHHHHHHHH
Q 013324 170 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-----L------RG----NSHARISWA-YWFKKILYYQVALVYM 230 (445)
Q Consensus 170 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~---~-----~------~~----~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (445)
.+||+.+.+.++++++..++..+..||++... + + ++ +.+.++.++ ..+|++.++...+...
T Consensus 174 ~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (434)
T PRK11663 174 YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYV 253 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHH
Confidence 68999998877766555444334445432210 0 0 00 001112222 2567788887766666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHH-HHHHHHHHHHHHHHHhhcc
Q 013324 231 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAY-YSAGGVLWVFCGAGILILP 308 (445)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~ 308 (445)
+..........|+|.|++++.|++..+.+.......++.+++.++.+++ +|+.++.|+. .....+........+...+
T Consensus 254 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK11663 254 LVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc
Confidence 6666666778899999988889998888888788888889999998875 4442221221 1111111111111112222
Q ss_pred CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 309 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 309 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
..+.+...+.....|++.............+..|++++| ...|+.+....+|.++++.+.+.+.+.
T Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~p~~~g~l~~~ 399 (434)
T PRK11663 334 FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAG--AATGFVGLFAYLGAALSGYPLAKVLEI 399 (434)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHH--hHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 222222222223333322212222233445667788888 889999999999999999888877643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-26 Score=227.74 Aligned_cols=337 Identities=10% Similarity=0.014 Sum_probs=244.4
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
|.......++.+...++.+.++..+|.+..|+|.+..+.+++.+.+.+..++.+|++|+++||+||||.++. +.+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~-~~~~~~~ 83 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML-GGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHH
Confidence 445567889999999999999999999999999999999999999999999999999999999999998544 4444444
Q ss_pred HHHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013324 103 SFSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 165 (445)
Q Consensus 103 ~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 165 (445)
+...+. +.+.........+.+...++++|+++.++......+|..+++.+++.+.+
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~------- 156 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE------- 156 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 433332 11122222233444554457889999999999889999999888887753
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC--c-----------------------ch-----------
Q 013324 166 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN--S-----------------------HA----------- 209 (445)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~--~-----------------------~~----------- 209 (445)
..+|||.|++...++++..++..+..||++.+++++.+ . +.
T Consensus 157 ---~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (495)
T PRK14995 157 ---HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGA 233 (495)
T ss_pred ---cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 46899999887776666665555556654322111100 0 00
Q ss_pred -------HHH--------HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHH
Q 013324 210 -------RIS--------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSI 274 (445)
Q Consensus 210 -------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~ 274 (445)
... -.+++|||.+....+..++..........++|.|+++..|.++.+.+.......++..++++
T Consensus 234 ~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~ 313 (495)
T PRK14995 234 LLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGP 313 (495)
T ss_pred HHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 02567788777666666666666777778999999999999999999988888888888888
Q ss_pred HHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHH
Q 013324 275 LLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVC 352 (445)
Q Consensus 275 l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 352 (445)
+.+++ +|+.+ |+.+..+.++..++...+.... .++.+......++.|++.+...+.......+..|++++| .+.
T Consensus 314 ~~g~l~~r~g~--~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g--~~~ 389 (495)
T PRK14995 314 IAGILVSRLGL--RLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAA--AAG 389 (495)
T ss_pred HHHHHHHHcCc--hHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcc--hHH
Confidence 88864 33332 5666667776666655444332 234455566778889999988877777777778899999 888
Q ss_pred hHHHHHHHHHHHHHHHHHHHcc
Q 013324 353 GTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 353 ~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+++++.+.+|..+|..+.+.+.
T Consensus 390 ~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 390 AIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888877766553
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=232.38 Aligned_cols=327 Identities=10% Similarity=-0.018 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHH----HHHHHHHHHHHH-----
Q 013324 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA----GSVLVAVSFSSV----- 107 (445)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~----~~i~~~~~~~~~----- 107 (445)
.++-...+..+|.+.+|+|+++++.|++.+++.+.+++++|+.|+++||+||||.+.+. +...+..+...+
T Consensus 42 y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 121 (467)
T PRK09556 42 YLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVS 121 (467)
T ss_pred HHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccch
Confidence 33444455667888888899999999999999999999999999999999999974322 111111111100
Q ss_pred H------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 013324 108 F------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI 175 (445)
Q Consensus 108 ~------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 175 (445)
+ +.+....+...++.++.+ ++||+++.++...+..+|.++++.+...+.... ...+||..
T Consensus 122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~-------~~~~~~~~ 193 (467)
T PRK09556 122 LGLMIALWALSGFFQSTGGPCSYSTITRWTP-RRKRGRFLGFWNISHNLGGAGAGGVALWGANYF-------FDGHVIGM 193 (467)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHcC-ccceeeeEEeeecccchhhhHHHHHHHHHHHhh-------ccCcchhH
Confidence 0 112223344456677765 788999999988888888888877665544321 01258887
Q ss_pred HHHHHHHHHHHHHHHhcccccccccc-----------c--ccC------CcchHHHH-HHHHhchHHHHHHHHHHHHHHH
Q 013324 176 AYSSIFIGCCFVGIFLSRTEEPRLKM-----------G--LRG------NSHARISW-AYWFKKILYYQVALVYMLTRLV 235 (445)
Q Consensus 176 ~~~~~~~~~i~~~~~~~~~~e~~~~~-----------~--~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
+.+.++++++..++.++..+|++++. + +++ +.+..+.+ ++.+|||.+|...+..++....
T Consensus 194 f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (467)
T PRK09556 194 FIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIV 273 (467)
T ss_pred HHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 77767766665555444444322110 0 000 00111212 3378999999888877777777
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHH
Q 013324 236 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAF 314 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (445)
..+...|.|.|+++..|++..+.+.......++.+++.++.+++ +|+.+ |+.......+..+..........++.+.
T Consensus 274 ~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (467)
T PRK09556 274 RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANG--RRALVACIALALIIFTLGVYQHATSEYM 351 (467)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 77788999999999899998888887777788888999988865 33333 3333333222222222222222234444
Q ss_pred HHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHH-HHHHHHHHHHHccc
Q 013324 315 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQS 375 (445)
Q Consensus 315 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-g~~i~~~l~~~~~~ 375 (445)
..+..++.|+..............+..|++.+| .+.|+.+....+ |.++++.+++.+.+
T Consensus 352 ~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g--~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 352 YLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG--VANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH--HHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 444445555433222222223444678888989 899999988886 66899988888875
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-25 Score=217.49 Aligned_cols=322 Identities=13% Similarity=0.038 Sum_probs=217.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 013324 30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (445)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~ 108 (445)
....+...+....+.++++.|+.+. |.|+.++|++.+++.+...+.+|+.|+++||+||||.++ .+.....++.....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~-~~~~~~~~~~~~~~ 94 (400)
T PRK11646 16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIV-TGMLMRAAGFATMA 94 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHH-HHHHHHHHHHHHHH
Confidence 4666777788888899999988765 999999999999999999999999999999999988744 44444444433322
Q ss_pred -----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhH
Q 013324 109 -----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 171 (445)
Q Consensus 109 -----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g 171 (445)
+.+....+..+++.+..+ +++|+++.++......+|..+++.+++.+. ..+
T Consensus 95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-----------~~g 162 (400)
T PRK11646 95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIR-PHQRGRFFSLLMMQDSAGAVIGALLGSWLL-----------QYD 162 (400)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------Hhh
Confidence 122233445566677765 778999999999999999999988887774 358
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013324 172 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL 251 (445)
Q Consensus 172 ~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (445)
||+.+.+.++..++..++..+..||++.+ +.+++.+++++++++||+++...+..............++|.|.++..
T Consensus 163 ~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 239 (400)
T PRK11646 163 FRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIA 239 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccc---ccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc
Confidence 99988877766665544443444553221 112234556788899998776554443333333334567888887764
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhh-hhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhH
Q 013324 252 RMGQSAKALVPAIIYICSFIVSILLQEMAWTG-QRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANAL 328 (445)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~-~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 328 (445)
+ ++.+.+.......+....+....+ ++. ||. ++.+..+..+..++...+... ++.+...+...+.+++.+.
T Consensus 240 ~-~~~~~g~l~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~g~~~ 313 (400)
T PRK11646 240 G-SPSAVKWMYAIEACLSLTLLYPIA---RWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--SNLQQLFTLICLFYIGSII 313 (400)
T ss_pred C-CchHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH
Confidence 4 555566655555444443333322 333 222 344556665555554444332 2445555555677888887
Q ss_pred hhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 329 MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
..|...++..+..|++++| .+.|++++...+|..+|+.+.+.+.+
T Consensus 314 ~~p~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 314 AEPARETLSASLADARARG--SYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred HHccHHHHHHhcCCcccch--hhhhHHHHHHHHHHHhcccchHHHHH
Confidence 7777778888888999999 88889999888888888877776653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-25 Score=214.24 Aligned_cols=319 Identities=9% Similarity=0.016 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH------
Q 013324 35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------ 108 (445)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------ 108 (445)
.++..+....+.+|.+.+|+|+|+++.|++.+.+.+.+.+++++.|+++||+|||+. +.........+.....
T Consensus 2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T TIGR00903 2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF-LFGSLATFAAAAGRLLDPFNYE 80 (368)
T ss_pred hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHHHhccHH
Confidence 456677788888999999999999999999999999999999999999999998876 3333333323221100
Q ss_pred ---------HHH-hhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 013324 109 ---------GWA-ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYS 178 (445)
Q Consensus 109 ---------~~~-~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~ 178 (445)
+.+ ....+......+..+ ++||+++.++...+..+|.++++.++.++.. ..|||+.|.+
T Consensus 81 ~l~~~R~l~G~g~~~~~~~~~~~~~~~~-~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~----------~~gWr~~f~~ 149 (368)
T TIGR00903 81 WLLACQLLAALGQPFLLNAFAPAASQIR-EERRDLVISLLSFAMYLGIIFALAAGLKIYT----------AGGLQLLIIP 149 (368)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------ccchHHHHHH
Confidence 111 112223344456665 7899999999999999999999888777652 4689999988
Q ss_pred HHHHHHHHHHHHhcccccccccccccC-CcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 013324 179 SIFIGCCFVGIFLSRTEEPRLKMGLRG-NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA 257 (445)
Q Consensus 179 ~~~~~~i~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 257 (445)
.++++++..++.++..||++++++++. .++..+++++++|||.++...+..++.....+.+..|+|.|+++ .|++..
T Consensus 150 ~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~- 227 (368)
T TIGR00903 150 IAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI- 227 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-
Confidence 888887777766677787543221111 11122457889999999999888888888888899999999976 567654
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHH-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHh
Q 013324 258 KALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYS-AGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGI 334 (445)
Q Consensus 258 ~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (445)
.+.......+...++. +++.++.+|. |+... ....+.++....+... ++.+..+....+.+++.....+...
T Consensus 228 ~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 302 (368)
T TIGR00903 228 AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE--LNRLALFAFIGIAGLLMLPAYAIIM 302 (368)
T ss_pred HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHhhhhhHHHHH
Confidence 4444433333333333 3332333322 22222 2233333332222222 2333334444556666666666677
Q ss_pred hhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 335 SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 335 ~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.++..|++.+| ++.|+.+...++|+..++.+.+.+.
T Consensus 303 ~~~~~~~p~~~rg--t~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 303 DWIGKFCDKELHG--KAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHHhcchhhcC--cccchhhHHHHHHHHHHHHHHHHHh
Confidence 8888889999999 8889999999999888888776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-25 Score=218.13 Aligned_cols=330 Identities=9% Similarity=0.050 Sum_probs=212.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG-----AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~-----~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
+.....++.+..........+++|.|.+|+|.+..+ .|++.+++.+.+.+.+|+.|+++||+||||.++. +.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~ 93 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR-SALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH-HHHH
Confidence 344456788888888888999999999998887544 5999999999999999999999999999987554 4443
Q ss_pred HHHHHHHHH---------------HH-HhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013324 100 VAVSFSSVF---------------GW-AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 163 (445)
Q Consensus 100 ~~~~~~~~~---------------~~-~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 163 (445)
...+..... +. .....+..+.+.+.. ++++|+++.++...+..+|..+++.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----- 167 (408)
T PRK09874 94 MGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQV-PRNKSGWALGTLSTGGVSGALLGPLAGGLLAD----- 167 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhc-CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333332221 11 111222234445555 36788999998888888888888877776643
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHH-HHHHHHHHHHHHHHHH
Q 013324 164 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVA-LVYMLTRLVVNVSQAY 242 (445)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 242 (445)
..+||+.+.+.+++.++..+...+..||++.+.+++++.+. ++..+.+|+++++... ....+..........+
T Consensus 168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T PRK09874 168 -----SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHM-REVVTSLKNPKLVLSLFVTTLIIQVATGSIAPI 241 (408)
T ss_pred -----HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHH-HHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 45799988877776666655555556664322211111122 2334556777765433 3333344444556677
Q ss_pred HHHHHHhhhcccch---hhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHH
Q 013324 243 LAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYV 317 (445)
Q Consensus 243 ~~~~~~~~~g~~~~---~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (445)
++.|..+..+.... ..+.+.....++.+++.+..+ ++.||. |+.+..+..+..+..+...+. ++.+...+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g---~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 316 (408)
T PRK09874 242 LTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLG---KLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQLGI 316 (408)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHHHH
Confidence 88887765433221 123333444555556655555 445554 555556655555444433332 35566666
Q ss_pred HHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 318 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 318 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..++.|++.+...+....+..+..+++++| ..++.++....+|..+|+.+.+.+.
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 317 LRFLLGAADGALLPAVQTLLVYNSSNQIAG--RIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHhCCcccce--eeehHHHHHHHHHHHhhHHHHHHHH
Confidence 677889998888887777777777888888 7777888888888888888777664
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-25 Score=220.72 Aligned_cols=317 Identities=11% Similarity=0.003 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H--------------
Q 013324 44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F-------------- 108 (445)
Q Consensus 44 ~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~-------------- 108 (445)
...+|...+ .|+|+++.|++.+++.+..++++|+.|+++||+||||+++.. .+..+++.... +
T Consensus 49 ~~~~p~l~~-~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~ 126 (452)
T PRK11273 49 ALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG-LILAAAVMLFMGFVPWATSSIAVMFVL 126 (452)
T ss_pred HHhhHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH-HHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 334554444 499999999999999999999999999999999999975443 33232222211 0
Q ss_pred ------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHH-HHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 013324 109 ------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL-SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF 181 (445)
Q Consensus 109 ------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~ 181 (445)
+.+....+....+.+..+ +++|++..++.+.+..+|.. .+++.+..+. ...+||+.+.+.++
T Consensus 127 ~~l~gi~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~----------~~~gw~~~f~i~~~ 195 (452)
T PRK11273 127 LFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGLPPLLFLLGMA----------WFNDWHAALYMPAF 195 (452)
T ss_pred HHHHHHHHhccchHHHHHHHHhCC-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----------HhccHHHHHHHHHH
Confidence 111111223344455553 67899999988777777653 3333222221 12489999888777
Q ss_pred HHHHHHHHHhccccccccc----ccc------------c--CCcchHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 013324 182 IGCCFVGIFLSRTEEPRLK----MGL------------R--GNSHARISW-AYWFKKILYYQVALVYMLTRLVVNVSQAY 242 (445)
Q Consensus 182 ~~~i~~~~~~~~~~e~~~~----~~~------------~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (445)
+.++..++..+..||++++ +++ + ++.+.++.+ +.++|||.+|...+...+.....+....|
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 275 (452)
T PRK11273 196 AAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 275 (452)
T ss_pred HHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554444445553221 000 0 000112222 34678899888777777776677778889
Q ss_pred HHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhH-HHHHHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 013324 243 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 320 (445)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (445)
+|.|+++..|++..+.+.......++.+++.++.+++ +|+.++.|+ .......+..++...+.....++.+...+...
T Consensus 276 ~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 355 (452)
T PRK11273 276 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMI 355 (452)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 9999999889888777777777777788888888865 444222122 22222222223322222222223333333333
Q ss_pred HHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHH-HHHHHHHccc
Q 013324 321 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI-AVYVLQSYQS 375 (445)
Q Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i-~~~l~~~~~~ 375 (445)
+.|.+..........+..+..|++.+| .++|+.+....+|+.+ ++.+.+.+.+
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~~g~~v~g~l~~ 409 (452)
T PRK11273 356 VIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVGYTVD 409 (452)
T ss_pred HHHHHHHhHHHHHHHHHHHHcChhhhh--hHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 444433222222333455678889999 8888888887787655 5666666543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=213.51 Aligned_cols=353 Identities=13% Similarity=0.099 Sum_probs=266.8
Q ss_pred chhHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHh----CC-------------------------C-HHHHHHHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDIT-AACWFTYLLLFLTDI----GL-------------------------S-PRGAAAVMLSGQI 70 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----g~-------------------------s-~~~~g~l~~~~~i 70 (445)
++|+.++|.+-+++++.. ...+..++|.|+++. |. + .+..+...++..+
T Consensus 2 tr~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l 81 (477)
T PF11700_consen 2 TRREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGL 81 (477)
T ss_pred chhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHH
Confidence 357888999999998853 345556778888874 21 1 3456888999999
Q ss_pred HHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------------HHHhhhhhHhhhhhhcccCccc-
Q 013324 71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF-------------------GWAATQVAHMSMVNCITLNSTS- 130 (445)
Q Consensus 71 ~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~-------------------~~~~~~~~~~al~~~~~~~~~~- 130 (445)
..++..|+.|.++|+-|+||.++....+...++..+.+ +|...++.++++.+++.+++++
T Consensus 82 ~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~ 161 (477)
T PF11700_consen 82 LQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRV 161 (477)
T ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhh
Confidence 99999999999999999999988766666655544433 6667888899999999975544
Q ss_pred ------------------------cchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHH
Q 013324 131 ------------------------RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCF 186 (445)
Q Consensus 131 ------------------------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 186 (445)
|++.++......++|+++..++...+....+.. .+.....|..+.+.++..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--~~~~~~~r~~~~~~a~ww~vf 239 (477)
T PF11700_consen 162 RAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--ASNTWAIRVAFLIVALWWLVF 239 (477)
T ss_pred hhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cccchhhhHHHHHHHHHHHHH
Confidence 288888888888888888776665554332221 123456788888888888888
Q ss_pred HHHHhcccccccccc-cccCC-------cchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013324 187 VGIFLSRTEEPRLKM-GLRGN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK 258 (445)
Q Consensus 187 ~~~~~~~~~e~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 258 (445)
.+..++.+||++.++ .++.+ ++..+.++++.|+|+...+++.++++.-+.+++......|..+++|++..+.
T Consensus 240 siP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l 319 (477)
T PF11700_consen 240 SIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQL 319 (477)
T ss_pred HHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHH
Confidence 888888888865422 11111 1234556777788888888888999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhh------ccCchhHHHHHHHHHHHHHHhHhhh
Q 013324 259 ALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI------LPMNMSAFMYVLAIFVGIANALMMV 331 (445)
Q Consensus 259 ~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (445)
..+..+..+.+++|+++.+++ +|++.|.|+.+....++..+..+.-.+ .+..+.|.+++..++.|+..|..++
T Consensus 320 ~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs 399 (477)
T PF11700_consen 320 IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQS 399 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHH
Confidence 888888889999999998865 333333236666665555332222222 1234678888888999999999999
Q ss_pred hHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCC
Q 013324 332 TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP 378 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~ 378 (445)
...++..+..|+++++ .++|++++..+..+.+||.+.+.+.+..+
T Consensus 400 ~sRs~~~~LiP~g~e~--efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 400 ASRSLFSRLIPPGREA--EFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHHHHhCCCchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999 99999999999999999999998875443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=214.14 Aligned_cols=323 Identities=12% Similarity=-0.006 Sum_probs=206.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H
Q 013324 31 SGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F 108 (445)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~ 108 (445)
+..+...+......+.+|.|+.+ +|.|++++|++.+++.+...+.+|+.|+++||+||||++++.+.+...++.... +
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 34556677788888999999876 499999999999999999999999999999999999986655544443332221 1
Q ss_pred ----------------HHHhhhhhHhhhhhhcccCccccchh--hhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 013324 109 ----------------GWAATQVAHMSMVNCITLNSTSRVVL--TSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 170 (445)
Q Consensus 109 ----------------~~~~~~~~~~al~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (445)
..+.......++..+..+ +++|.+. .+....+..+|.++++.+++.+.+ ..
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~----------~~ 152 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHAD-RTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL----------GF 152 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH----------hc
Confidence 011111222333444443 3444432 455556667788887777666542 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013324 171 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 250 (445)
Q Consensus 171 g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (445)
+||+.+.+.++..++..++..+..||+++++++++ .+.+.++.+++|+++......++..........++|.|++++
T Consensus 153 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (375)
T TIGR00899 153 GFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---TRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHE 229 (375)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 89999988877766666555555666433221111 122345567788777655544444444455567788998888
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHh
Q 013324 251 LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALM 329 (445)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 329 (445)
.|.++.+.+..........+++.++.+++ +|+.+ |+.+..+..+..+....... .++.+...+..++.|++.+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGK--RRLMLLAALAGVAFYTGLAA--DNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 89988877766555555555566666643 33322 45555554444433333332 234555556667778888877
Q ss_pred hhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 330 MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+....+.++..|+ +++ .+.++++....+|..+++.+.+.+.
T Consensus 306 ~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAG--AATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHHHHHHHHhCcc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666665 446 6778888888888888888777664
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=220.35 Aligned_cols=335 Identities=10% Similarity=0.043 Sum_probs=208.2
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
+..+......+...+..+...+++|.|+++. |+|+.++|.+.+++.+...+.+|+.|+++||+||||+.++...+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4555556667777787888899999999985 999999999999999999999999999999999999865432222211
Q ss_pred HH-HHHH----------HH---------HhhhhhHhhhhhhccc-CccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013324 103 SF-SSVF----------GW---------AATQVAHMSMVNCITL-NSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 161 (445)
Q Consensus 103 ~~-~~~~----------~~---------~~~~~~~~al~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 161 (445)
.. .... .. +....+....+.++.+ ..++++...+....+..+|..+++.+++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~---- 165 (420)
T PRK09528 90 FGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILF---- 165 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHH----
Confidence 11 0000 00 0000011111222222 1234555666666666778888877776664
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc---c-c--cCCcchHHHHHHHHhchHHHHHHHHHHHHHHH
Q 013324 162 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-L--RGNSHARISWAYWFKKILYYQVALVYMLTRLV 235 (445)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
..+|++.+.+.++++++..+..++..+|+++++ + + ++++...++.++.+|||+++...+........
T Consensus 166 -------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~ 238 (420)
T PRK09528 166 -------NINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACF 238 (420)
T ss_pred -------hcCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHH
Confidence 236888888777666666555544444433221 0 0 11112234456788899877655544444444
Q ss_pred HHHHHHHHHHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCch
Q 013324 236 VNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNM 311 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (445)
......+.|.|+.+.. +.+..+.+.+.....+...++.++.+++ +|+++ |+.+..+.++..+......+. ++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~l~~~~~~l~~~~--~~ 314 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGA--KNALLLAGTIMAVRIIGSGFA--TG 314 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHhc--cc
Confidence 4444556777766543 3444555666666666677777777753 33333 555666666666655555443 35
Q ss_pred hHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhH-HHHHHHHHHHHHHHHHHHccc
Q 013324 312 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ig~~i~~~l~~~~~~ 375 (445)
.+..++..++.+++.+...+....+..+..|++.++ ..++. +++...+|..+++.+.+.+.+
T Consensus 315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA--TIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee--eeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677888888777766777777777888877 55444 566777888887777766653
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=213.12 Aligned_cols=332 Identities=12% Similarity=0.040 Sum_probs=219.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~ 104 (445)
......+..+.............|.+.+|+|.|+.+.|++.+.+.+...+++++.|+++||+||||+++... +...++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-~~~~~~~ 94 (406)
T PRK11551 16 TIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV-ALFGLFS 94 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH-HHHHHHH
Confidence 334444566666777777777888888888999999999999999999999999999999999999865443 3333332
Q ss_pred HHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 013324 105 SSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 167 (445)
Q Consensus 105 ~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 167 (445)
... + +.+.......+++.+..+ +++|+++.++.+.+..+|..+++.++..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------- 163 (406)
T PRK11551 95 LATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVG-PRLRGTAVSLMYCGVPFGGALASVIGVLAA---------- 163 (406)
T ss_pred HHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 222 1 122233344566677664 678999999988888888888776654432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccC-CcchHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 168 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-NSHARISWAYWFKK---ILYYQVALVYMLTRLVVNVSQAYL 243 (445)
Q Consensus 168 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 243 (445)
+..+||+.+.+.+++.++..+...+..||+++++++++ +++.+...+..+++ +..+......++..........|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (406)
T PRK11551 164 GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWL 243 (406)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24679998887766555555444455666543221111 11111122233332 223333333344444555667788
Q ss_pred HHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 013324 244 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 322 (445)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (445)
|.|+++ .|.+....+.......++.+++.++.+++ +|+.+ |+.+..+.+...++.+.+...+ +.+...+..++.
T Consensus 244 p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 318 (406)
T PRK11551 244 PSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRP--RRVVLLIYAGILASLAALAAAP--SFAGMLLAGFAA 318 (406)
T ss_pred HHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 988876 58888888888888888888888888864 33322 4444444444444434333322 445555556677
Q ss_pred HHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 323 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
|++.+...+...++..+..|++++| ...|+.+....+|..+++.+.+.+..
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRG--TGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhh--hhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 7777666777777888888999989 88889999999999999998888754
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-24 Score=211.32 Aligned_cols=323 Identities=13% Similarity=0.085 Sum_probs=210.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-----
Q 013324 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----- 108 (445)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----- 108 (445)
+..........+.+|.+.+|.|.|+++.|++.+++.+...+++|+.|+++||+||||.++ .+.+...++.....
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~-~~~~~~~i~~~~~~~~~~~ 91 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAI-PGAALFIIASLLCSLAETS 91 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHH-HHHHHHHHHHHHHHHhCcH
Confidence 334444455557889888889999999999999999999999999999999999988744 44444444433322
Q ss_pred ------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 013324 109 ------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 176 (445)
Q Consensus 109 ------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 176 (445)
+.+.......+++.+..+ +++|++..+..+....++..+++.+++.+. +..+|++.+
T Consensus 92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~----------~~~g~~~~~ 160 (392)
T PRK10473 92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLD-DRRRAKVLSLLNGITCIIPVLAPVLGHLIM----------LKFPWQSLF 160 (392)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCcChHHHH
Confidence 112223344455666664 778999999988887778777777766553 245899998
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 013324 177 YSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 256 (445)
Q Consensus 177 ~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (445)
.+.+++.++..++.....||++.+++ +++.+..+..++.+||++++...+...+..........+.|.+.+++.|.++.
T Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 239 (392)
T PRK10473 161 YTMAAMGILVLLLSLFILKETRPARA-PAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRG 239 (392)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccc-CCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHH
Confidence 88877777666665555677543321 22222334456778898877655544444444445556678888888899888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhh
Q 013324 257 AKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 336 (445)
Q Consensus 257 ~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (445)
+.+.......++.+++.++.+++.++.+| |+.+..+..+..++.+.+.+.+ ..+.......+.+.+.+...+.....
T Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~l~~r~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~ 316 (392)
T PRK10473 240 EYAIIMALTAGVSMTVSFSTPFALGIFKP-RTLMLTSQVLFLAAGITLALSP--SHAVSLFGITLICAGFSVGFGVAMSQ 316 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 87877777788888888887764222222 5566666666665555554433 22232333334444443333322221
Q ss_pred cccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 337 ~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
... ..+++.| .++++.++.+.+|+++++.+.+..++
T Consensus 317 ~~~-~~~~~~g--~~~~~~~~~~~~g~~~~~~l~~~~g~ 352 (392)
T PRK10473 317 ALG-PFSLRAG--VASSTLGIAQVCGSSLWIWLAAVLGI 352 (392)
T ss_pred Hhc-cCccccc--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111 1234455 88888899999999999999998874
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=211.85 Aligned_cols=329 Identities=15% Similarity=0.087 Sum_probs=225.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH
Q 013324 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (445)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~ 107 (445)
..+...+..........+.+|.+.+|+|.|++++|++.+++.+...+++++.|+++||+||||.++. +.....++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~ 87 (385)
T TIGR00710 9 LLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL-GLFIFALSSLGL 87 (385)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH-HHHHHHHHHHHH
Confidence 3344444455666677777888888889999999999999999999999999999999999987544 443444333322
Q ss_pred H-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 013324 108 F-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 170 (445)
Q Consensus 108 ~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (445)
. +.+....+..+++.|..+ +++|++..+.......+|..+++.+++.+.+ ..
T Consensus 88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~ 156 (385)
T TIGR00710 88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYP-GEELSRIYSILMPVLALAPAVAPLLGGYILV----------WL 156 (385)
T ss_pred HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hc
Confidence 1 222334455566777765 7789999999988888888888887776643 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013324 171 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 250 (445)
Q Consensus 171 g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (445)
+||+.+.+.+++.++..+...+..||++++++++++++..+.+++.+|||+++...+...+..........+.|.++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (385)
T TIGR00710 157 SWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI 236 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 89998887777766666555555666443322222233345667888999988777666666666666777888898888
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc--C-chhHHHHHHHHHHHHHH
Q 013324 251 LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--M-NMSAFMYVLAIFVGIAN 326 (445)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~g~~~ 326 (445)
.|.++.+.+.......++.+++.++.+++ +|+.+ |+.+..+..+..++...+.... . +..+.......+.|++.
T Consensus 237 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (385)
T TIGR00710 237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGA--KSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGN 314 (385)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 89998888888877888888888888864 33333 4444555555444444333321 1 22334445566778888
Q ss_pred hHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 327 ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
+...+.......+..| +++| ...++.+.....++.+.+.+++..
T Consensus 315 ~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 315 SMISSIAMAYALEDFP-HVAG--TASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHHHhccCc-ccch--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8777766666655554 4567 778888877777667777766633
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=212.53 Aligned_cols=324 Identities=13% Similarity=0.044 Sum_probs=213.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc-----CCchHHHHHHHHHHHHHHHHHH
Q 013324 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVF 108 (445)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~-----Grrr~~ll~~~i~~~~~~~~~~ 108 (445)
+...+..+.....+|.|++|.|.|.+++|++..+... .+.+|++|+++||+ ||||.|++.+.+..+.+.....
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~ 86 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA 86 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3345667777889999999999999999999877776 59999999999999 9999877776665544433322
Q ss_pred --------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Q 013324 109 --------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 168 (445)
Q Consensus 109 --------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 168 (445)
..+...++..+++++..+ ++||+++++++..+..+|.++++.++..+.+.
T Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~--------- 156 (402)
T PRK11902 87 FCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLH-PEERGAGAAVKVLGYRLAMLVSGGLALWLADR--------- 156 (402)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc---------
Confidence 233455667788888864 77899999999998888988887776665421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccccccccccC--CcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 169 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY 246 (445)
Q Consensus 169 ~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (445)
..|||..+.+.+++.++..+.. +..||++.++++++ +++.++++++++|||.++...+...+..........+.+++
T Consensus 157 ~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 235 (402)
T PRK11902 157 VLGWGNTYLLMAGLMLAGALTT-LWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTF 235 (402)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2489999988777766554433 44566543321111 12345677889999998877666555554444334456667
Q ss_pred HHhhhcccchhhhHHHHHHH-HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHH--
Q 013324 247 VINDLRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI--LPMNMSAFMYVLAI-- 320 (445)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~~-~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-- 320 (445)
+.++.|.++.+.+......+ ++.+++.++.+++ +|+.+ |+....+..+..+..+.+.. ..+++.+...+...
T Consensus 236 l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~--~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 236 LIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGL--YRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77778999887777654433 3467777777754 33333 44444444443333222211 11234444444433
Q ss_pred --HHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 321 --FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 321 --l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..|++.+...+....+.++..|.++.+ ...++.++....++.+++.+.+.++
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~G~l~~~~G 367 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYA--LLSALASVGRVYVGPTSGYLVEAYG 367 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566666777777777777766655 5555556666666667777777776
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=211.16 Aligned_cols=333 Identities=13% Similarity=0.060 Sum_probs=216.0
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
.++..+......+..........+.+|.+.+++|.|+.+.|++.+++.+...+.+|+.|+++||+||||.+++ +.+...
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~-~~~~~~ 84 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILV-GMSIFI 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH-HHHHHH
Confidence 4444444444444555555666667888888889999999999999999999999999999999999997544 333333
Q ss_pred HHHHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 102 VSFSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 102 ~~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
++..... +.+........+..+..+ +++|+++.++...+..++..+++.+++.+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~------- 156 (394)
T PRK11652 85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYE-GTQLRHANSLLNMGILVSPLLAPLIGGLLT------- 156 (394)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3332221 111111112233344443 567788888877777777777777666553
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 244 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
+..+||+.+.+.+++.++..++..+..||++.++ +++++.++.+++.+|||+++...+..+...........+.+
T Consensus 157 ---~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (394)
T PRK11652 157 ---TLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD--ARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSG 231 (394)
T ss_pred ---hccChHHHHHHHHHHHHHHHHHHHHhCCccCccc--cchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 2458999988777666655544445566643322 12223566778889999887665554444444555566777
Q ss_pred HHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh---hccCchhHHHHHHHHH
Q 013324 245 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGIL---ILPMNMSAFMYVLAIF 321 (445)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 321 (445)
.++++..|.++.+.+.......++.++++.+.+ ++.||.++..........++..... .....+.+.......+
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T PRK11652 232 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG---RPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAAL 308 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 888887899888777776666677777777766 4444432222222222222222211 1112344555666778
Q ss_pred HHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 322 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+++.+...+.......+..| |++| ...++.+....+|..+++.+.+.+.
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 309 FFFGAGMLFPLATSGAMEPFP-YLAG--TAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-ccch--HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888888888877777666655 5667 7888888888999999999888775
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=211.50 Aligned_cols=327 Identities=10% Similarity=-0.005 Sum_probs=219.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~ 104 (445)
+.+.+.++.+...+........++...+|.|.++.+.+++.+.+.+...+.+|+.|+++||+||||+++.. .+...++.
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~-~~~~~~~~ 82 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA-NGIKLLGC 82 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH-HHHHHHHH
Confidence 34567788888888777676677777888899999999999999999999999999999999999985543 33333322
Q ss_pred HHH-H-------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 013324 105 SSV-F-------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 170 (445)
Q Consensus 105 ~~~-~-------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (445)
..+ + +.+.......++++|+.+ ++||++++++.......+.++++.+++.+.+ .
T Consensus 83 ~~~~~~~~~~~~r~l~G~~~a~~~pa~~a~i~~~~~-~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-----------~ 150 (393)
T PRK11195 83 LLMLFGIHPLLAYGLVGIGAAAYSPAKYGILTELLP-GEKLVKANGWMEGSTIAAILLGTVLGGALAD-----------P 150 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 221 1 233344455677888886 7889999999998888899999988888753 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccC--C----cchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 171 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--N----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 244 (445)
Q Consensus 171 g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
.|+..+.+.+...++.. +..+..||++.++++++ + ++.++.++.++|+|.+........+.+.........+|
T Consensus 151 ~~~~~~~i~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK11195 151 HAEAALAVCALIYLLAA-LFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVL 229 (393)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666554443333332 23344565432211111 1 11233456778888866554444444444555566777
Q ss_pred HHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 013324 245 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 322 (445)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (445)
.|.++..|.++.+.+.......++.+++++..+++ .||. ++.+..+..+ ......+.+ .++.+......++.
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l---~~~~~~~~~~~~g~~~-~~~~~~~~~--~~~~~~~~~~~~~~ 303 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARL---VTLETVLRVLPAGILM-GLVVLLMAL--QHSLLPAYPLLILI 303 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH---hcCCcccchHHHHHHH-HHHHHHHHH--HhHHHHHHHHHHHH
Confidence 88888889999999988888888899999888743 3333 4455555432 222222222 23455555666688
Q ss_pred HHHHhHhhhhHhhhccccccccc-ccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 323 GIANALMMVTGISMQNVLVGEDL-SGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
|++.+...+...+..++..|++. +| ...++.++.+.++..++..+.+..
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g--~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAG--HSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccch--hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88888877666666666554443 56 888899999999999988777654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=212.21 Aligned_cols=322 Identities=11% Similarity=-0.002 Sum_probs=207.1
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
+++.....+..+...+...+..+++|.++++. |.|++++|++.+++.+...+.+|+.|+++||+||||+++....+...
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL 93 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence 45556688888899999999999999988665 99999999999999999999999999999999999985543322211
Q ss_pred HHHHHH---------------H---------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 013324 102 VSFSSV---------------F---------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 102 ~~~~~~---------------~---------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 157 (445)
.+..+. + +.+.......++..+..+ +++|+++.++...+..+|.++++.+++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG-ALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC-hhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 111100 0 122222333344456554 788999999888887888888887777665
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVN 237 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (445)
. ..+|++.+.+..+++++..+.. ...+|++ ++++++ .++++.+|+ .+.......+......
T Consensus 173 ~----------~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~ 233 (399)
T PRK05122 173 H----------WGGLAGLGLLIMLLALLGLLLA-RPRPAVP--PVKGER----LPFRRVLGR--VWPYGMGLALASIGFG 233 (399)
T ss_pred H----------cccHHHHHHHHHHHHHHHHHHH-hcCCCCC--CCCccc----hhHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3 4578988776655544433322 2222211 111111 122333332 2222222223334455
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHH
Q 013324 238 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFM 315 (445)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (445)
....+.|.|+++ .|.+. .+.......++.+++.++.+++ .||+ |+.+..+..+..++.......+ +.+..
T Consensus 234 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l---~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 305 (399)
T PRK05122 234 TIATFITLYYAA-RGWDG--AALALTLFGVAFVGARLLFGNL---INRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMA 305 (399)
T ss_pred HHHHHHHHHHHH-ccccc--chHHHHHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHH
Confidence 566778888765 35532 3444455566677777777753 3333 5556666666665555544433 45555
Q ss_pred HHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 316 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++..++.|++.+...+.......+..|++++| .++++++....+|..+++.+.+.+.
T Consensus 306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~ 362 (399)
T PRK05122 306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRG--AALGAYSVFLDLSLGITGPLAGLVA 362 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677889988887776655556677888888 8899999999999888888777665
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-25 Score=213.31 Aligned_cols=318 Identities=12% Similarity=-0.027 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H----------
Q 013324 40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F---------- 108 (445)
Q Consensus 40 ~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~---------- 108 (445)
...+..++|.+.+|+|+|.+++|++.+++.+...+++|+.|+++||+||||++++. .+...++.... +
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 97 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLG-GILYGLGFTFYAIADSLAALYLT 97 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777899999999999999999999999999999999999986543 33333333322 1
Q ss_pred ------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Q 013324 109 ------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI 182 (445)
Q Consensus 109 ------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~ 182 (445)
+.+...........+.. +++|+++.+....+..+|..+++.+...+. ...+||+.+.+.+++
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~f~~~~~~ 165 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWF--PDKRGLASGIIIGGYGLGSFILSPLITSVI----------NLEGVPAAFIYMGII 165 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHc--CcccHHHHHHHHHhcchhHhHHHHHHHHHH----------hcccHHHHHHHHHHH
Confidence 01111111122223333 467999999888877777665443333322 245899999888887
Q ss_pred HHHHHHHHhcccccccccccc--cCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013324 183 GCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL 260 (445)
Q Consensus 183 ~~i~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (445)
.++..+...+..||+++++++ ++.++.+.+.++.+|||+++......++..........+.++|.+ +.|.+..+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 244 (377)
T TIGR00890 166 FLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ-SLGLSDGFLVL 244 (377)
T ss_pred HHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcCCCHHHHHH
Confidence 777766655555554332211 111122334577889988877666555554444445566677754 46777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccc
Q 013324 261 VPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNV 339 (445)
Q Consensus 261 ~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 339 (445)
......++.+++.++.+++ +|+.+ |+.+..+..+..++.+...+.+....+..+....+.+++.+...+....+..+
T Consensus 245 ~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 322 (377)
T TIGR00890 245 AVSISSIFNGGGRPFLGALSDKIGR--QKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSD 322 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHH
Confidence 7777788888888888864 33332 55566666666666555544332223333344456677777666656667777
Q ss_pred ccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 340 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 340 ~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
..|++++| ...|+.+....+|..+++.+.+.+.+
T Consensus 323 ~~~~~~~~--~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 323 IFGPANSA--ANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred Hhhhhhhh--hHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888 88899999999999999988877653
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-24 Score=210.79 Aligned_cols=335 Identities=13% Similarity=0.083 Sum_probs=207.7
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
+|......++.+..........++++.+++|.|.|+++.|++.+.+.+...+.+|+.|+++||+||||.++....+ ..+
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~-~~~ 90 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLL-WCV 90 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHH
Confidence 3445556777777778778888899999988899999999999999999999999999999999999985543332 222
Q ss_pred HHHHH----H-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHH-HHHHHHHHHHHHhh
Q 013324 103 SFSSV----F-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-LSLYAIAFIVFSVS 160 (445)
Q Consensus 103 ~~~~~----~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~ 160 (445)
+.... . +.+....+..+.+.+.. ++++|+++.++...+..+|. +.++.+++.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~ 169 (402)
T TIGR00897 91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT-KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF 169 (402)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 21110 0 11111222233344444 37889999999988887775 46666555544221
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccc---cCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 013324 161 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RGNSHARISWAYWFKKILYYQVALVYMLTRLVVN 237 (445)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (445)
+. ....|+..+... +. .++..+..+|+++++++ ++.++.++.+++++|||+++...+..++......
T Consensus 170 g~-----~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
T TIGR00897 170 GE-----MNTLWSALAFVL--TG---GVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLF 239 (402)
T ss_pred ch-----HHHHHHHHHHHH--HH---HHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 10 112255443221 11 12222223332111111 1112234456778999998877777666666777
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhc---cCchhH
Q 013324 238 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL---PMNMSA 313 (445)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 313 (445)
...+|.|.|.++ .|.+..+.+.......++..++.+..+++ +|..+| |.....+.....+....+... ..++.+
T Consensus 240 ~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 317 (402)
T TIGR00897 240 GFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM-NTVRWFGGVGCGIFTLALYYIPQHFGHSFA 317 (402)
T ss_pred HHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHccCCcHH
Confidence 788899988865 79988877777777778888888888854 333321 222222222222222222211 123445
Q ss_pred HHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 314 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
..++..++.|++.+...+.. ....+ .+++++| ...|+.+....+|+.++|.+.+.+.+
T Consensus 318 ~~~~~~~~~G~~~~~~~~~~-~~~~~-~~~~~~g--~~~g~~~~~~~lg~~~gp~i~g~l~~ 375 (402)
T TIGR00897 318 VALIIAIALGIFLAGYVPLA-AVFPT-LAPKHKG--AAMSVLNLSAGLSAFLAPAIAVLFIG 375 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHh-hCcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566677787776654433 33333 3455778 88999999999999999988877653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-24 Score=214.40 Aligned_cols=335 Identities=13% Similarity=0.056 Sum_probs=214.5
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc-----CCchHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGS 97 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~-----Grrr~~ll~~~ 97 (445)
+|+.....+..+...+......+.+|.++++.|.+.+++|.+..+... . +.++++|+++||+ ||||+|++.+.
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~ 88 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-Y-VFKFLWSPLMDRYTPPFLGRRRGWLLATQ 88 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-H-HHHHHHHHHHHcccccCCCCchHHHHHHH
Confidence 344555556666677888888899999999999999999997444433 2 6899999999999 99999887777
Q ss_pred HHHHHHHHHH-H-------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 013324 98 VLVAVSFSSV-F-------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 98 i~~~~~~~~~-~-------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 157 (445)
+...++...+ + +.+...++..++..|..+ ++||++..++...+..+|.++++.+...+.
T Consensus 89 i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~-~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 89 LLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLP-AEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665553322 1 334566677788888875 788999999999999999888877766664
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccC--CcchHHHHHHHHhchHHHHHHHHHHHHHHH
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLV 235 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
+ ...|||..|.+.+++.++..+..++ .||++.++++++ +++..+++++.+++++.+...+...+....
T Consensus 168 ~---------~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~ 237 (491)
T PRK11010 168 D---------RYLGWQGMYWLMAALLIPCIIATLL-APEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLG 237 (491)
T ss_pred h---------cccCHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHH
Confidence 2 1258999998888777666554443 577543211111 112234677788877766655555555555
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHH-HHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhh--ccCch
Q 013324 236 VNVSQAYLAFYVINDLRMGQSAKALVPA-IIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI--LPMNM 311 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~ 311 (445)
......+.++|+.+..|++..+.+.... ...++.+++.++.+++ +|+.+ |+.+.++.++.++..+.+.. ...++
T Consensus 238 ~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~--~~~l~i~~~l~~l~~l~~~~l~~~~~~ 315 (491)
T PRK11010 238 DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSL--FRALMIFGILQGVSNAGYWLLSITDKN 315 (491)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5566678888888778999988887764 4456788888888864 44433 34444433333332222211 11223
Q ss_pred hHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 312 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+.......+..+..+...+...++..+..+++..| ..+++.+....+|..+++.+.+.+.
T Consensus 316 ~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~--t~~gl~~s~~~lg~~~~~~~~G~l~ 376 (491)
T PRK11010 316 LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSA--TQFALLSALSAVGRVYVGPVAGWFV 376 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344433333433344445555556666666 5666666666666665555555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-24 Score=209.41 Aligned_cols=329 Identities=11% Similarity=0.030 Sum_probs=210.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 013324 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (445)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~ 108 (445)
..+..+...+...+..+.+|...+++|.+.++.++..+++.+..++++++.|+++||+||||.++. +.....++...+.
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~-~~~~~~~~~~~~~ 99 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLIT-GALIFTLACAATL 99 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHH-HHHHHHHHHHHHH
Confidence 445555555566666677777777789999999999999999999999999999999999997544 4444444433322
Q ss_pred ---------------HH--HhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhH
Q 013324 109 ---------------GW--AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 171 (445)
Q Consensus 109 ---------------~~--~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g 171 (445)
+. +.......+.+.|..+ +++|.+..++......++..+++.+++.+.. ..+
T Consensus 100 ~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~----------~~g 168 (413)
T PRK15403 100 FTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFG-QTKGIKLMAIITSIVLVAPIIGPLSGAALMH----------FVH 168 (413)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcC
Confidence 11 1111122234455543 6778888888888888888888877766542 458
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccc-CCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013324 172 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (445)
||+.|.+.+++.++..+...+..||++.+++++ +.++..+++++++|||+++...+...+..........+.|.++++.
T Consensus 169 w~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~ 248 (413)
T PRK15403 169 WKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA 248 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Confidence 999998888777776655445566643322111 1223345678889999999877777666666667777889999998
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhh---ccCchhHHHHHHHHHHHHHH
Q 013324 251 LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI---LPMNMSAFMYVLAIFVGIAN 326 (445)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~ 326 (445)
.|.++.+.++.......+.++++.+.+.+ ++..+ ++.......+..++.+.+.. ...++.+..++...+.++|.
T Consensus 249 ~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~ 326 (413)
T PRK15403 249 GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTE--PRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGI 326 (413)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 89999888877666666677766666532 22211 22221111111112111111 11233333456667788888
Q ss_pred hHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 327 ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+...+........ .....+| .+.++.++.+..+...++...+.+.
T Consensus 327 ~~~~p~~~~~al~-~~~~~~G--~a~a~~~~~~~~~~~~~~~~~g~~~ 371 (413)
T PRK15403 327 GLIFPTLFRFTLF-SNNLPKG--TVSASLNMVILMVMAVSVEIGRWLW 371 (413)
T ss_pred HHHhHHHHHHHhc-cCCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766633221 1122246 7788888888888888877776653
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-24 Score=210.17 Aligned_cols=332 Identities=12% Similarity=0.035 Sum_probs=214.0
Q ss_pred CCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
+..|.....+.++.+.... ...+.+.+|...+|+|+|.++.|++.+++.+...+++|+.|+++||+||||+++ .+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~-~~~~l 83 (393)
T PRK09705 6 PLNFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVA-ISLLL 83 (393)
T ss_pred chHHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHH-HHHHH
Confidence 3444444555555444433 255667889999999999999999999999999999999999999999999854 44445
Q ss_pred HHHHHHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013324 100 VAVSFSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 162 (445)
Q Consensus 100 ~~~~~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 162 (445)
++.+...+ + +.+........++.+.. +++|+++.+....+...|..+++.+++.+.+.
T Consensus 84 ~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~--- 158 (393)
T PRK09705 84 IAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRF--QQRTPLVMGLWSAALMGGGGLGAAITPWLVQH--- 158 (393)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 55544433 2 22222333344555544 47789999998888888888888777766532
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 013324 163 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 242 (445)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (445)
..+||+.+...++..++..+......++++++++ +++. ..++.+++++.+...+...+..........|
T Consensus 159 ------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 227 (393)
T PRK09705 159 ------SETWYQTLAWWALPAVVALFAWWWQSAREVASSH-KTTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAW 227 (393)
T ss_pred ------cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-CCCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2378887655544444333332222222111111 1111 1234567777776666666666677778889
Q ss_pred HHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 013324 243 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 322 (445)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (445)
.|.|+++ .|.+..+.+.......++.+++.++.+++.++.+| |+.+..+..+..++...+...+.+.. .. ...+.
T Consensus 228 lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~-~~--~~~l~ 302 (393)
T PRK09705 228 LPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDR-RKLLMLALVLQLVGFCGFIWLPLQLP-VL--WAMVC 302 (393)
T ss_pred HHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHccchHH-HH--HHHHH
Confidence 9999987 69998888888888889999999988865333332 45556666665555554443332222 21 23456
Q ss_pred HHHHhHhhhhHhhhccccc-ccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 323 GIANALMMVTGISMQNVLV-GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
|++.+...+.......+.. +++++| ..+++.+....++..+++.+.+.+.+.
T Consensus 303 g~g~g~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~~~gp~~~G~l~~~ 355 (393)
T PRK09705 303 GLGLGGAFPLCLLLALDHSVQPAIAG--KLVAFMQGIGFIIAGLAPWFSGVLRSI 355 (393)
T ss_pred HHhccchHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766665554444444 455667 778887778888888888777776643
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-24 Score=206.39 Aligned_cols=323 Identities=13% Similarity=-0.014 Sum_probs=215.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHH---HHHHHHHHHHH
Q 013324 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG---AGSVLVAVSFS 105 (445)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll---~~~i~~~~~~~ 105 (445)
..++.+..........+++|.|++|.|.|.+++|++.+++.+...+.+|++|.++||+|||+.... .+...+.....
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~ 88 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777888899999999999999999999999999999999999999999998543211 11111111110
Q ss_pred HH---H-----H---HHhh---hhhH-hhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 013324 106 SV---F-----G---WAAT---QVAH-MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 170 (445)
Q Consensus 106 ~~---~-----~---~~~~---~~~~-~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (445)
.. + . .... ..|. .++..+ .++||++..+....+..+|.++++.+++.+.+ ..
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~---~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~----------~~ 155 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANT---WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG----------MF 155 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH---HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH----------Hc
Confidence 00 0 0 1111 1222 222222 24567788888778888888888887777653 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccc-ccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013324 171 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLK-MGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN 249 (445)
Q Consensus 171 g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (445)
|||+.+.+.....++.. ......++++++ ++++++.+..+++++++|||+++...+..++..........+.|.|+++
T Consensus 156 g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~ 234 (382)
T TIGR00902 156 DEQNILAILTAGLAFML-IGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA 234 (382)
T ss_pred ChhHHHHHHHHHHHHHH-HHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998876654433222 222223321111 1111111223456788999999988888777778888888999999976
Q ss_pred hhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 013324 250 DLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (445)
.|.+....+.......++.+++.++.+ |+.||+ |+.+.++.+...+....+.+ .++.+.++...+++|+..+
T Consensus 235 -~g~s~~~~g~l~~~~~~~~i~~~~~~~---~l~~r~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~q~l~g~~~~ 308 (382)
T TIGR00902 235 -AGISASATGLLWGIGVLAEIIIFAFSN---KLFQNCSARDLLLISAIACVGRWAIIGA--IEAFPLIFLLQILHCGTFA 308 (382)
T ss_pred -CCCCHhHHHHHHHHHHHHHHHHHHHhH---HHHhhCCHHHHHHHHHHHHHHHHHHHHh--HhhHHHHHHHHHHHHHHHH
Confidence 799988888776666666666666655 455555 67777888887777666655 3477778888999999999
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHH-HHHHHHHHHHHHHHHHcc
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLS-FLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~ig~~i~~~l~~~~~ 374 (445)
...+....+..+. |+++++ ...++++ ....+|..+++.+.+.+.
T Consensus 309 ~~~~~~~~~i~~~-~~~~~~--~~q~~~~~~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 309 VCHLAAMRYIAAQ-PGSEIA--KLQALYNALAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred HHHHHHHHHHHhC-CHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888876 777777 6666654 344455555555555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-24 Score=207.65 Aligned_cols=327 Identities=10% Similarity=0.044 Sum_probs=205.1
Q ss_pred CCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHH
Q 013324 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG 96 (445)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~ 96 (445)
+|...++..+....+.+...+..++..+.+|.++.+ +|.|++++|++.+++.+...+.+|+.|+++||+||||+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~- 87 (392)
T PRK12382 9 TRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQG- 87 (392)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHH-
Confidence 344444556666777788888888888999988765 599999999999999999999999999999999999985543
Q ss_pred HHHHHHHHH---H--------------HH--------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHH
Q 013324 97 SVLVAVSFS---S--------------VF--------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 151 (445)
Q Consensus 97 ~i~~~~~~~---~--------------~~--------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 151 (445)
.+...++.. . .. +.+.......+.+.+..+ +|+|+++.++...+..+|..+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~a~~~~~~~~~~g~~~g~~ 166 (392)
T PRK12382 88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVG-PKHSGKVMSWNGMAMYGALAAGAP 166 (392)
T ss_pred HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-ccccchhhhHHHHHHHHHHHHHHH
Confidence 222222110 0 00 112222223345556664 788999999988888888888887
Q ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHH
Q 013324 152 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 231 (445)
Q Consensus 152 ~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (445)
+++.+.. ..+|++.+.+..++.++..... ...||++. +++++++.++..+..++ ..+...+
T Consensus 167 ~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~l 227 (392)
T PRK12382 167 LGLLLHS----------HFGFAALALTTMVLPLLAWAFN-GTVRKVPA--HAGERPSLWSVVGLIWK------PGLGLAL 227 (392)
T ss_pred HHHHHHh----------ccChHHHHHHHHHHHHHHHHHH-HhccCCCC--CcccCchHHHHHHHHHH------hHHHHHH
Confidence 7766542 3578887665444433332221 22233211 11111222222222211 1112222
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccC
Q 013324 232 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPM 309 (445)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~ 309 (445)
..........+.|.|+++. |.+. .+.......++.+++.+..++ +.||+ |+.+..+..+..++.....+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~---l~~r~g~~~~~~~~~~~~~~~~~~~~~~~- 300 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMRVLFGW---MPDRFGGVKVAIVSLLVETVGLLLLWLAP- 300 (392)
T ss_pred HHHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHHHHHHH---HHHhcCCCeehHHHHHHHHHHHHHHHHcc-
Confidence 2334445567778887653 5543 334444455566677777664 34443 5556666666666655544432
Q ss_pred chhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 310 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
+.+..++..++.|++.+...+.......+..+++++| ...|+++....+|..+++.+.+.+.+
T Consensus 301 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 301 -TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRG--TALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred -cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677888888877776666666778888888 88899988888888888888777654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=203.03 Aligned_cols=322 Identities=12% Similarity=0.004 Sum_probs=231.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-----------------
Q 013324 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----------------- 108 (445)
Q Consensus 46 ~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----------------- 108 (445)
..|...+|.|+|.+++|.+.+.+.+.+.++..+.|.++||.++|+. +..+++..++...+..
T Consensus 51 a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-m~~gLilsai~nil~Gfs~s~~~~~~l~~lng~ 129 (448)
T COG2271 51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-MAFGLILSAIVNILFGFSPSLFLFAVLWVLNGW 129 (448)
T ss_pred ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-ehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3455555558999999999999999999999999999999999875 5556666655544322
Q ss_pred HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHH
Q 013324 109 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG 188 (445)
Q Consensus 109 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 188 (445)
..+....|....+..+.+ ++|||+..++.+..-++|+.+.+.+... ..+. .+.+||..|++.++++++..+
T Consensus 130 fQg~Gwpp~~~~i~~Wfs-r~eRG~~~siWn~shNiGGal~~~~~~l--a~~~------~~~~w~~~f~~pgiiaiival 200 (448)
T COG2271 130 FQGMGWPPCARTITHWFS-RKERGTWWSIWNTSHNIGGALAPLVALL--AFFA------FHGGWRAAFYFPGIIAIIVAL 200 (448)
T ss_pred HhcCCCcHHHHHHHHHcC-ccccCceEEEehhhhhcccchHHHHHHH--HHHH------hccchhHHHHHHHHHHHHHHH
Confidence 222344566666777775 7889999999999989888877766622 1111 245899999999999998888
Q ss_pred HHhcccccccccc-------------c--ccCCc----chHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 189 IFLSRTEEPRLKM-------------G--LRGNS----HARI-SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 248 (445)
Q Consensus 189 ~~~~~~~e~~~~~-------------~--~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (445)
+.++..||++++. + +++++ +.++ -++.++|||..|.+.+.+.+....-+++..|.|.|+.
T Consensus 201 ~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~ 280 (448)
T COG2271 201 ILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLS 280 (448)
T ss_pred HHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 8877777654211 0 00111 1122 3456789999999999999999999999999999999
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhh-HHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 013324 249 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLK-AYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIAN 326 (445)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 326 (445)
|..|++...+.........+++.|+++.|++ +|+.|..| ..-++.++...++.+.+...+..+.++..+.....|+..
T Consensus 281 e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~I 360 (448)
T COG2271 281 EVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLI 360 (448)
T ss_pred HhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999975 44443223 334444444455545555444445566666666667655
Q ss_pred hHhhhhHhhhcccccccccccchhHHhHHHHHHHH-HHHHHHHHHHHccccCCc
Q 013324 327 ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQSMSPT 379 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-g~~i~~~l~~~~~~~~~~ 379 (445)
-..+-..-....+..|++..| ++.|+.+++..+ |.+.++..++.+-+..+.
T Consensus 361 yGPqmLiGl~a~e~~pK~AaG--tA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW 412 (448)
T COG2271 361 YGPQMLIGLAAAEFVPKKAAG--TATGFVGLFAYLIGAALAGLPLGYIADTWGW 412 (448)
T ss_pred hhHHHHHHHHHhccccHhhcc--chhchhhhHHHHhhHHhcCCcceeeEecCCC
Confidence 444433334455678889989 999999888888 888888877777554333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-23 Score=208.98 Aligned_cols=327 Identities=10% Similarity=0.017 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H-------
Q 013324 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F------- 108 (445)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~------- 108 (445)
......+.+++|.+.+|+|+|.++.|++.+++.+...+++++.|+++||+|||++... +.+...++..+. +
T Consensus 49 ~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~-~~~~~~~~~~~~~~~~s~~~l 127 (476)
T PLN00028 49 FVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAF-LLMLTAPAVFCMSLVSSATGF 127 (476)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH-HHHHHHHHHHHHHHhcCHHHH
Confidence 3334455566777777889999999999999999999999999999999999987543 444443333321 1
Q ss_pred -------HHH-hhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 013324 109 -------GWA-ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 180 (445)
Q Consensus 109 -------~~~-~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~ 180 (445)
+.. ....+....+.++.+ +++|+++.++...+..+|..+++.+.+.+...+...+ .....|||+.+.+.+
T Consensus 128 ~~~r~l~G~~~~~~~~~~~~i~~~~~-~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-~~~~~gWr~~f~i~g 205 (476)
T PLN00028 128 IAVRFFIGFSLATFVSCQYWMSTMFN-GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-APSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcC-hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHH
Confidence 111 111223334455554 6789999998877767777777666654433221110 001358999999888
Q ss_pred HHHHHHHHHHhcccccccccc---c-cc---CCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013324 181 FIGCCFVGIFLSRTEEPRLKM---G-LR---GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 253 (445)
Q Consensus 181 ~~~~i~~~~~~~~~~e~~~~~---~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 253 (445)
++.++..++.++..++++..+ . ++ ++.+..+.+++.++++++|.+.+.+++..........+.|.|+.+..|+
T Consensus 206 ~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~ 285 (476)
T PLN00028 206 LLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGL 285 (476)
T ss_pred HHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 887776655544444322111 0 01 1112234556778888888776666555555556677899999888899
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhh----hHHH-HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 013324 254 GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL----KAYY-SAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 254 ~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (445)
+...++.+.....++.+++.++.+++ +|+.+|+ |+.. .....+..+..+.+.. .++.+......++.+++.+
T Consensus 286 s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~--~~~~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 286 SLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR--ANSLGAAIVVMILFSIFVQ 363 (476)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHH
Confidence 98888888888888899999888875 5665542 2222 2222222222222221 2234444444555566555
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
...+....+..+. +++++| ..+|+.+....+|+.+++.+.+
T Consensus 364 ~~~~~~~~~~~~~-~~~~~g--~~~g~~~~~g~lg~~i~~~l~~ 404 (476)
T PLN00028 364 AACGATFGIVPFV-SRRSLG--VISGLTGAGGNVGAVLTQLLFF 404 (476)
T ss_pred HhhhhhcccCccc-Chhhch--hhhhhhhccccHHHHHHHHHHH
Confidence 5444444444443 456777 8889888888888888887765
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-24 Score=210.00 Aligned_cols=329 Identities=10% Similarity=0.038 Sum_probs=210.8
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
|+.+......+........+.+++|.|+++. |.|+.++|++.+++.+...+.+|+.|+++||+||||.+++ +.+...+
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~-~~~~~~~ 85 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL-AITAFAS 85 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH-HHHHHHH
Confidence 4456667788888888899999999999875 9999999999999999999999999999999999987543 3333333
Q ss_pred HHHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013324 103 SFSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 165 (445)
Q Consensus 103 ~~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 165 (445)
+.... + ..........++..|..+ +++|++..++.....++|..+++.+++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~lg~~igp~l~~~l~-------- 156 (395)
T PRK10054 86 GFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLS-STSKTKIFSLNYTMLNIGWTVGPPLGTLLV-------- 156 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 32221 1 111111123344456554 677999999988888889888888777654
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 166 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 245 (445)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (445)
..+|+..+.+.+++.++..++..+..+|++.+++++ +++ ..+.++.+|||+++...+..++..........+.+.
T Consensus 157 ---~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 231 (395)
T PRK10054 157 ---MQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-TGS-VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQ 231 (395)
T ss_pred ---HhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-hhh-hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHH
Confidence 246888887776666655444434344432221111 111 122367789999887776666655555555556666
Q ss_pred HHHhh--hcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHH
Q 013324 246 YVIND--LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIF 321 (445)
Q Consensus 246 ~~~~~--~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (445)
|.... .+.+....+.......+..+...+.. +++.||+ |+.+..+..+..++...+.+. .++.+...+..++
T Consensus 232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 307 (395)
T PRK10054 232 YVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSV---GRRLNAANIRPLMTAGTLCFVIGLVGFIFS-GNSLLLWGMSAAV 307 (395)
T ss_pred HHHHhcccchHHHHHHHHHHhhhhheeeehhHH---HHHHccCCchhHHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHH
Confidence 66432 34444444444444433333333333 3555555 555666666666655544432 2355555566778
Q ss_pred HHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 322 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+++.+...|...+...+..|++.+| .+++..+ ...+|.++|+.+.+.+.
T Consensus 308 ~~~g~~~~~p~~~~~~~~~~p~~~~~--~~~~~~~-~~~~G~~~Gp~~~G~l~ 357 (395)
T PRK10054 308 FTVGEIIYAPGEYMLIDHIAPPGMKA--SYFSAQS-LGWLGAAINPLVSGVIL 357 (395)
T ss_pred HHHHHHHHHhhHHHHHHHhCCcccce--ehHhHHH-HHHHHHHHHHHHHHHHH
Confidence 88888877777777777788888888 6666555 34466666666665554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-23 Score=205.09 Aligned_cols=358 Identities=11% Similarity=-0.015 Sum_probs=225.0
Q ss_pred cCCcccccccCCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 013324 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF 86 (445)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~ 86 (445)
|++...++|.-.++....-.....+..+...+.......++|.+.+++|+|+++.|++.+.+.+...+++|+.|+++||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~ 88 (438)
T PRK10133 9 QSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL 88 (438)
T ss_pred hhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444333221333344444455566667777777788888988777799999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHH----H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHH
Q 013324 87 GHFKIWHGAGSVLVAVSFSSV----F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 146 (445)
Q Consensus 87 Grrr~~ll~~~i~~~~~~~~~----~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~ 146 (445)
||||..+ .+.....++...+ . +.+...+..+..+.+.. ++++|....+..+....+|.
T Consensus 89 G~r~~l~-~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~s~~~~~~~~G~ 166 (438)
T PRK10133 89 SYKAGII-TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGA 166 (438)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHHHHHHHHHHHHH
Confidence 9999844 4444444444321 1 33344555566666653 35556556777778888899
Q ss_pred HHHHHHHHHHHHhhcc------------c---ccc-chhhHHHHHHHHHH-HHHHHHHHHHhccccccccccccc-CCcc
Q 013324 147 LSLYAIAFIVFSVSTA------------K---THA-DLENQYRWIAYSSI-FIGCCFVGIFLSRTEEPRLKMGLR-GNSH 208 (445)
Q Consensus 147 ~~~~~~~~~l~~~~~~------------~---~~~-~~~~g~~~~~~~~~-~~~~i~~~~~~~~~~e~~~~~~~~-~~~~ 208 (445)
.+++.++.++...... . +.. ....+||+.|.... +..++..+......||.+.+++++ ++.+
T Consensus 167 ~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 246 (438)
T PRK10133 167 IIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGS 246 (438)
T ss_pred HHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Confidence 8888887765421100 0 000 00135777765433 333333333233334322111111 1122
Q ss_pred hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhh
Q 013324 209 ARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV-INDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL 286 (445)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~ 286 (445)
..+..++++|||.++...+..++..........|.+.|+ ++..|.++.+.+.......++.++|+++.+++ +|+.+
T Consensus 247 ~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~-- 324 (438)
T PRK10133 247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP-- 324 (438)
T ss_pred hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--
Confidence 344567889999987766666666666666677888885 56679999999988888889999999888854 33333
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHH
Q 013324 287 KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIA 366 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~ 366 (445)
|+.+..+..+.....+...+.+ +. ..+....+.|++.+...|...+...+..+++ .+ .+.++..+ ..+|.+++
T Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~--~as~l~~~-~~~g~~~~ 397 (438)
T PRK10133 325 HKVLAAYALIAMALCLISAFAG--GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIVM-TIIGGGIV 397 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hc--cchhHHhH-HhccchHH
Confidence 5555555555544444433332 22 2245567889999999999988887776654 45 45555543 44677788
Q ss_pred HHHHHHccc
Q 013324 367 VYVLQSYQS 375 (445)
Q Consensus 367 ~~l~~~~~~ 375 (445)
+.+.+.+.+
T Consensus 398 ~~i~G~l~~ 406 (438)
T PRK10133 398 TPVMGFVSD 406 (438)
T ss_pred HHHHHHHHH
Confidence 887777653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=208.74 Aligned_cols=341 Identities=13% Similarity=0.054 Sum_probs=217.8
Q ss_pred CCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
+.+|+......++.+...+.........|.+.+++|.++++.|++.+++.+...+++|+.|+++||+||||++++. .+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~-~~~ 86 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTS-IVL 86 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence 3456666778888888888888888888988888899999999999999999999999999999999999986544 333
Q ss_pred HHHHHHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013324 100 VAVSFSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 162 (445)
Q Consensus 100 ~~~~~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 162 (445)
.+++.... + +.+.......+++.+..+ +++|+++.++...+..+|.++++.+...+....
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-- 163 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWP-KHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW-- 163 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 33333222 1 122233444566677765 678999999999988899988888777665421
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cCCcchHHHHHHHHh-------------------chH-
Q 013324 163 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFK-------------------KIL- 221 (445)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~-------------------~~~- 221 (445)
..+||+.+.+.++..++.. +.....||++..+++ ++++..++..++..+ .++
T Consensus 164 ------~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (405)
T TIGR00891 164 ------GDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKR 236 (405)
T ss_pred ------CccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhh
Confidence 2359998876555444433 333445664321111 100000111111100 011
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHH
Q 013324 222 ---YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 297 (445)
Q Consensus 222 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~ 297 (445)
+........+..........++|.|+.++.|.+..+.+.......++.+++.++.+++ +|+.+ |+.+..+..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~--~~~~~~~~~~~ 314 (405)
T TIGR00891 237 WPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGR--RKAYVCSLLAG 314 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhhhHHHHHHH
Confidence 1112222223333444566788999988889998888888888888888998888864 33333 45555554443
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 298 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
.+........ .++.+...+...+.++..+...+....+..+..|++++| .+.|+.+....+|..+++.+.+.+.+.
T Consensus 315 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 315 QLLIIPVFAI-GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA--AGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhH--HHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2322222222 234444444444555555444555556677778888888 788888888888888888877776543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=208.29 Aligned_cols=324 Identities=14% Similarity=0.093 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H--------
Q 013324 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F-------- 108 (445)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~-------- 108 (445)
+.........|.+.+++|.++.+.|++.+++.+...+++|+.|+++||+||||.+++ +.+...++.... +
T Consensus 8 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (399)
T TIGR00893 8 LDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAV-FIVIWGVFTGLQAFAGAYVSLY 86 (399)
T ss_pred HHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHH-HHHHHHHHHHHHHHHcCHHHHH
Confidence 444555556677666779999999999999999999999999999999999997544 333333332221 1
Q ss_pred --------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 013324 109 --------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 180 (445)
Q Consensus 109 --------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~ 180 (445)
+.+....+...++.+..+ +++|++..++......+|.++++.+.+.+.. ..+||+.+.+.+
T Consensus 87 ~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~~~~~~~~~~ 155 (399)
T TIGR00893 87 ILRVLLGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWILI----------HFSWQWAFIIEG 155 (399)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCC-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHH----------hCCchHHHHHHH
Confidence 222333444566667664 6789999999999888998888877776542 457999988777
Q ss_pred HHHHHHHHHHhccccccccccc-----cc---------------CCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 013324 181 FIGCCFVGIFLSRTEEPRLKMG-----LR---------------GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ 240 (445)
Q Consensus 181 ~~~~i~~~~~~~~~~e~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (445)
++.++..+...+..+|++.+++ ++ ++++.+...++.+|+|+++...+..++.........
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFL 235 (399)
T ss_pred HHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHH
Confidence 7766665555444554332110 00 001122345678899998888888888888888888
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHH--HH-HHHHHHHhhcc-CchhHHH
Q 013324 241 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGV--LW-VFCGAGILILP-MNMSAFM 315 (445)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~--~~-~~~~~~~~~~~-~~~~~~~ 315 (445)
.+.|.|+++..|.+..+.+.......++.+++.++.+++ +|+.+|.+........ .. ........... .+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (399)
T TIGR00893 236 TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA 315 (399)
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 999999999889988888888777788888888888864 4444432111111111 11 11111111111 1233333
Q ss_pred HHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 316 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
.....+.+++.+ ..+....+..+..|++++| ...++.+....+|..+++.+.+.+.+.
T Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 316 LALVALGFFGLG-AGAIGWALISDNAPGNIAG--LTGGLINSLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HHHHHHHHhchh-hhhHHHHHHHhhcChhHHH--HHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence 333333344444 5677778888889999999 899999999999999999998887643
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=218.58 Aligned_cols=333 Identities=12% Similarity=0.043 Sum_probs=237.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~ 106 (445)
....++.+...+.....+..+|.+.+|+|.++.+.|++.+.+.+...++.|+.|+++||+||||.++. +.+...++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~ 83 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLI-STFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHH-HHHHHHHHHHH
Confidence 44567777888888889999999999999999999999999999999999999999999999997544 44444444333
Q ss_pred HH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Q 013324 107 VF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 169 (445)
Q Consensus 107 ~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 169 (445)
+. +.+.......+++.+..+ +++|+++.++...+..+|..+++.+++.+. +.
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----------~~ 152 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYP-PEKRGRAMAIWGLTVLVAPALGPTLGGWII----------EN 152 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhhhhhccHhHhc----------cC
Confidence 22 222333444566677765 778999999988888888888887776654 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccccccccc-----------------------CCc---ch-H------------
Q 013324 170 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-----------------------GNS---HA-R------------ 210 (445)
Q Consensus 170 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~-----------------------~~~---~~-~------------ 210 (445)
.+||+.+.+.+.++++..++..+..||++++++++ ++. +. .
T Consensus 153 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (485)
T TIGR00711 153 YHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAI 232 (485)
T ss_pred cCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH
Confidence 68999988777666666555544455432211100 000 00 0
Q ss_pred -----------H--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 013324 211 -----------I--SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ 277 (445)
Q Consensus 211 -----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~ 277 (445)
+ .-.+++|+|+++...+..++..........++|.|+++..|.++.+.+.......++.+++.++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 233 IAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG 312 (485)
T ss_pred HHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012467888887777766666677777788999999998999998888888888888888888888
Q ss_pred HH-HHhhhhhhHHHHHHHHHHHHHHHHHhh-c-cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhH
Q 013324 278 EM-AWTGQRLKAYYSAGGVLWVFCGAGILI-L-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT 354 (445)
Q Consensus 278 ~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 354 (445)
++ +|..+ |+.+..+..+..++...+.+ . +..+.+......++.|++.+...+.......+..|++++| .+.++
T Consensus 313 ~l~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g--~~~~~ 388 (485)
T TIGR00711 313 RMGDKIDP--RKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIA--RGSSL 388 (485)
T ss_pred HHHhhcCc--HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHh--HHHHH
Confidence 64 33332 55666777766666655542 2 2234455556677889999887766666666667888888 88999
Q ss_pred HHHHHHHHHHHHHHHHHHccc
Q 013324 355 LSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 355 ~~~~~~ig~~i~~~l~~~~~~ 375 (445)
.++.+.+|+.+|+.+.+.+.+
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887776543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-24 Score=206.28 Aligned_cols=328 Identities=8% Similarity=-0.049 Sum_probs=202.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 013324 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (445)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~ 105 (445)
.+.-.++.+............+|.+.+++|+|+++.|++.+.+.+...+++++.|+++||+||||.++ .+.+...++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~-~~~~~~~i~~~ 87 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLI-FGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHH
Confidence 33334455555555666777788888888999999999999999999999999999999999999744 34444433332
Q ss_pred HHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Q 013324 106 SVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 168 (445)
Q Consensus 106 ~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 168 (445)
... +.+.......+.+.+..+ +++|++..+.......+|..+++.+.+.+.. .
T Consensus 88 l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~ 157 (394)
T PRK03699 88 GLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYE-GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA---------R 157 (394)
T ss_pred HHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------c
Confidence 221 111122223445566653 5678888877766666777776666555432 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcc-cccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 169 ENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV 247 (445)
Q Consensus 169 ~~g~~~~~~~~~~~~~i~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (445)
..+||+.+.+.+++.++..++.++. .||+++++++++++. .++ ..++.++...+..++..........|.|.|+
T Consensus 158 ~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 232 (394)
T PRK03699 158 SIEWYWVYACIGLVYVAIFILTLFSEFPALGKHAPKADKPV----AKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYA 232 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCcc----ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999887777666554443321 122111111111111 111 1245555555555555566667788999999
Q ss_pred HhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 013324 248 INDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (445)
++..|+++.+.+.......++..++.++.+++.++.++ |+.+.....+..+....+... ++.+...+..++.|++.+
T Consensus 233 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~-~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~~ 309 (394)
T PRK03699 233 QKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDL-QRILTVLAGLALVLMYLFVNT--DDPSHLLYAILGLGFFSS 309 (394)
T ss_pred HHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHH
Confidence 98889998888888777778888888888864222222 444444444444433333322 244444455667777777
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
...+...+...+..++ +++ ...+.......+|..+++.+.+.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~-~~~--~~~g~~~~~~~~g~~i~p~~~G~l~~ 354 (394)
T PRK03699 310 AIYTTIITLGSQQTKV-ASP--KLVNFILTCGTIGTMLTFVVTSPIVA 354 (394)
T ss_pred HHHHHHHHHHHHHccC-CCH--HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 6666655555544443 334 44566666677888888887777654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-23 Score=202.22 Aligned_cols=314 Identities=11% Similarity=0.033 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH---------
Q 013324 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF--------- 108 (445)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~--------- 108 (445)
+...+..+.+|.+.+++|+|++++|++.+++.+...+++++.|+++||+||||.+. .+.+...++.....
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVIL-GGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHH-HHHHHHHHHHHHHHHHccHHHHH
Confidence 44566778899999999999999999999999999999999999999999988744 44444433333221
Q ss_pred --------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 013324 109 --------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 180 (445)
Q Consensus 109 --------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~ 180 (445)
+.+....+..+++.+..+ +++|++..++.+.+..+|..+++.+++.+.+ ..+||+.+.+.+
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~~~~~~~~~~ 152 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFP-KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV----------WFSWHAIFWVLA 152 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HcChHHHHHHHH
Confidence 223344555667777764 7789999999988888888888877766642 458999988777
Q ss_pred HHHHHHHHHHhcccccccccccccC--CcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 013324 181 FIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK 258 (445)
Q Consensus 181 ~~~~i~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 258 (445)
++.++..++..+..||+++++++++ .++..+++++.+|+|+++...+...+..........+.|.++.+..|.++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 232 (377)
T PRK11102 153 LAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNF 232 (377)
T ss_pred HHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHH
Confidence 7776665555555666432221111 11233456678889987776666555555566666777888888889998888
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHHHHHhHhhhhHhh
Q 013324 259 ALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL--PMNMSAFMYVLAIFVGIANALMMVTGIS 335 (445)
Q Consensus 259 ~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (445)
+.......++.+++.++.+++ +|..+ |+.+..+..+..+..+..... ...+.+...+...+.+.+.+...+....
T Consensus 233 g~~~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (377)
T PRK11102 233 GYYFALNIVFLFVMTIINSRFVRRVGA--LNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMA 310 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888888888888887754 33322 555555554433322222211 1223344333344444444444444444
Q ss_pred hcccccccccccchhHHhHHHHHHH-HHHHHHHH
Q 013324 336 MQNVLVGEDLSGCAFVCGTLSFLDK-MSCGIAVY 368 (445)
Q Consensus 336 ~~~~~~~~~~~g~~~~~~~~~~~~~-ig~~i~~~ 368 (445)
...+..| +.+| ...++.+.... +|..+++.
T Consensus 311 ~~~~~~~-~~~g--~~~~~~~~~~~~~g~~~g~~ 341 (377)
T PRK11102 311 VILDEFP-HMAG--TASSLAGTLRFGIGAIVGAL 341 (377)
T ss_pred HHhcccc-ccch--HHHHHHHHHHHHHHHHHHHH
Confidence 4444444 5667 66666555443 44444443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-23 Score=201.61 Aligned_cols=350 Identities=15% Similarity=0.104 Sum_probs=241.2
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh----ccCCchHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGS 97 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~D----r~Grrr~~ll~~~ 97 (445)
+.++.+..+...++.++.+....+++++|++++|.++...+.+..+..+.+.+.+|+.|+++| |+||||++++.+.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 457788888999999999999999999999888999999999999999999999999999999 5999999987666
Q ss_pred HHHHHHHHHHH----------------------------------HHHhhhhhHhhhhhhcccCcccc-chhhhHHHHHH
Q 013324 98 VLVAVSFSSVF----------------------------------GWAATQVAHMSMVNCITLNSTSR-VVLTSCRNAFT 142 (445)
Q Consensus 98 i~~~~~~~~~~----------------------------------~~~~~~~~~~al~~~~~~~~~~r-~~~~~~~~~~~ 142 (445)
+...++..++. .......|+.++++|+.++++|| +.+.++.....
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 55544433321 23346678889999999865554 57888888888
Q ss_pred HHHHHHHHHHHHHH--HHhhcccc---ccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccc---------cCCcc
Q 013324 143 MVANLSLYAIAFIV--FSVSTAKT---HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---------RGNSH 208 (445)
Q Consensus 143 ~~g~~~~~~~~~~l--~~~~~~~~---~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~---------~~~~~ 208 (445)
++|.++++.+++.. ...++..+ ......+.++.|.+.+++.++..++..+.+||++..+++ .++.+
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~ 241 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHG 241 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccc
Confidence 99999998887654 11111100 000123788899888777777777777888885431110 01111
Q ss_pred hHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccch------hh---h-HHHHHHHHHHHHH
Q 013324 209 ARISWAYWFKK-----ILYYQVALVYMLTRLVVNVSQAYLAFYVIND-LRMGQS------AK---A-LVPAIIYICSFIV 272 (445)
Q Consensus 209 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~------~~---~-~~~~~~~~~~~ig 272 (445)
.+..+++++++ |..+.+++..++.+.++..+..|...|+-++ .+-++. +. + +......+...+.
T Consensus 242 ~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~ 321 (477)
T TIGR01301 242 EEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGIT 321 (477)
T ss_pred hhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233444332 5678889999999999999999988887643 332211 11 2 2233334444455
Q ss_pred HHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccC--ch-----------------hHHHHHHHHHHHHHHhHhhhh
Q 013324 273 SILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM--NM-----------------SAFMYVLAIFVGIANALMMVT 332 (445)
Q Consensus 273 ~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~l~g~~~~~~~~~ 332 (445)
+++.+++ +++++| |+...++.++.+++.....+... ++ .+..++...+.|+..+..+..
T Consensus 322 s~~l~~l~~~~g~~-k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~si 400 (477)
T TIGR01301 322 SIGMEKLCRGWGAG-KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSI 400 (477)
T ss_pred HHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHH
Confidence 5555543 333222 45556666666666555544321 00 256677778899999999988
Q ss_pred HhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHH
Q 013324 333 GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372 (445)
Q Consensus 333 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~ 372 (445)
.+++..+..+++.+|.|...|+.|.+..+.+.+.....+.
T Consensus 401 Pfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 401 PFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred hHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 8999888877655555599999999999988887765555
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-23 Score=200.49 Aligned_cols=329 Identities=13% Similarity=0.062 Sum_probs=196.9
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
......+.++.+...+......+++|.|+++. |.+++++|++.+.+.+...+.+++.|.++||+||||.+++.+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGV 93 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 34455667778888898899999999998775 99999999998887776676666766669999999976554444332
Q ss_pred HHHHHH-H---------------HHHhhhhh-HhhhhhhcccCcccc--chhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013324 102 VSFSSV-F---------------GWAATQVA-HMSMVNCITLNSTSR--VVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 162 (445)
Q Consensus 102 ~~~~~~-~---------------~~~~~~~~-~~al~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 162 (445)
+..... + +......| ..++..+..+ +++| +..+++...+..+|.++++.+++.+..
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~---- 168 (393)
T PRK15011 94 LACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHAD-KTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM---- 168 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH----
Confidence 222211 1 11111111 1233334332 2323 334567777778888888887777642
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHH
Q 013324 163 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI-LYYQVALVYMLTRLVVNVSQA 241 (445)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (445)
..|||+.|.+.++++++..++..+..||++.+++++ +++ . ++..+++ ..+..................
T Consensus 169 ------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (393)
T PRK15011 169 ------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA-TGT-L---EAPRRNRRDTLLLFVICTLMWGTNSLYII 237 (393)
T ss_pred ------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc-ccc-c---cccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 468999998887777776666656667643222111 111 1 1112332 223333333333344445567
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 320 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (445)
+.|.|++++.|.+..+.+.......+..+++.++.+++ +|+.+ |+.+..+.......+..... .++.+..++...
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 313 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGK--RFLMRVAAVAGVCFYAGMLM--AHSPAILLGLQL 313 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHH
Confidence 89999988889998877776665556666777777753 33333 44455554444433333222 234444444555
Q ss_pred HHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 321 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+.+++.+...+....+..+..|+ ++| .+.++++....+|..+++.+.+.+.
T Consensus 314 l~~~~~g~~~~~~~~~~~~~~p~-~~g--~~~~~~~~~~~lg~~~g~~l~G~i~ 364 (393)
T PRK15011 314 LNAIYIGILGGIGMLYFQDLMPG-QAG--SATTLYTNTSRVGWIIAGSLAGIVA 364 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-Ccc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444455555554 467 6777777777788887777766654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-23 Score=202.14 Aligned_cols=327 Identities=11% Similarity=0.031 Sum_probs=208.9
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~ 103 (445)
+..+.+....++.........+.+|.+.+|+|.+.++.|++.++..+...+++|+.|+++||+||||.+.. +.+..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~ 81 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF-LVALCVIG 81 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH-HHHHHHHH
Confidence 34556677778888888888889999999999999999999999999999999999999999999987544 44444444
Q ss_pred HHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 013324 104 FSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 166 (445)
Q Consensus 104 ~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 166 (445)
..++. +.+.......+.+.+.. ++++|++..+....+..+|..+++.+++.+.
T Consensus 82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--------- 151 (382)
T PRK10091 82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII-KPGKVTAAVAGMVSGMTVANLLGIPLGTYLS--------- 151 (382)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-ChHHhhHHHHHHHHHHHHHHHHhccHHHHHh---------
Confidence 33322 11112222234445554 3667888888877777777777776665543
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 167 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY 246 (445)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (445)
+..+||+.+.+.+++.++..+...+..||+++++ +.+.++. .+.+|+++.+.......+..........|.+++
T Consensus 152 -~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (382)
T PRK10091 152 -QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA----KGGLREQ-FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPY 225 (382)
T ss_pred -hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc----ccCHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2458999998887777666555555566643211 1122333 345677776665544444444444456677888
Q ss_pred HHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 013324 247 VINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI 324 (445)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 324 (445)
+++..|.++.+.+.......++.+++.++.+++ .||+ |+....+..+..++.+.+.... ++.+...+...+.++
T Consensus 226 ~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l---~~r~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~ 301 (382)
T PRK10091 226 MMFISGFSETSMTFIMMLVGLGMVLGNLLSGRL---SGRYSPLRIAAVTDFIIVLALLMLFFFG-GMKTASLIFAFICCA 301 (382)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHHhee---ccccCchhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 887789998888888888888889999888853 4443 5555566665555554443322 233443444445555
Q ss_pred HHhHhhhhHh-hhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 325 ANALMMVTGI-SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 325 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
+.....+... ....+..+++..| .. ..+....+|.++|+.+.+.+.+
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~g~~~Gp~~~G~l~~ 349 (382)
T PRK10091 302 GLFALSAPLQILLLQNAKGGELLG--AA--GGQIAFNLGSAIGAYCGGMMLT 349 (382)
T ss_pred HHHhhhHHHHHHHHHhCCcchHHH--HH--HHHHHHHHHHHHHHHHhHHHHH
Confidence 5443333222 2333334445555 32 2345566777777777766553
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-23 Score=206.67 Aligned_cols=340 Identities=14% Similarity=0.045 Sum_probs=243.1
Q ss_pred CCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHH
Q 013324 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (445)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i 98 (445)
.+++.+....+.++++..++...+-..-++.++++..-|+..+|++..+..+...+..|+.|.++||+.|||.++..-.+
T Consensus 5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~ 84 (524)
T PF05977_consen 5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLL 84 (524)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 35666777777888899999888888889999999989999999999999999999999999999999999986554433
Q ss_pred HHHHHHHHHH---------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 013324 99 LVAVSFSSVF---------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 99 ~~~~~~~~~~---------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 157 (445)
....+..+.. +.+......++.++++.+ +++..+++++.+...++..++|+.+++.++
T Consensus 85 ~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~-~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 85 RALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP-KEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 2222222111 233445566788899886 677888999999999999999999999887
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc--cccCCcchHHHHHHHHhchHHHHHHHHHHHHHHH
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GLRGNSHARISWAYWFKKILYYQVALVYMLTRLV 235 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
.. .|-.+.|.+-++..++.........++++.++ +++-.++.++.++-+.++|.........++....
T Consensus 164 a~----------~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~ 233 (524)
T PF05977_consen 164 AF----------FGAAAAFLINALSFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLF 233 (524)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 64 34455555444433332222222222211111 1111234556666677778766555555555555
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHH
Q 013324 236 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 315 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (445)
.......+|.+.++.+|.++...|++....++|+++|+++.+++++..++ ++.+..+.++.+++.+.+.+. .+.|..
T Consensus 234 ~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~-~~lv~~~~~~~a~~~~~lal~--~~~~~~ 310 (524)
T PF05977_consen 234 ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSS-RRLVLLASLLFALALLLLALS--PSFWLA 310 (524)
T ss_pred hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc-chhhHHHHHHHHHHHHHHhcc--hHHHHH
Confidence 55666778999999999999999999999999999999988854332221 455666666666665555553 367777
Q ss_pred HHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 316 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+..++.|++.........+..+..+|++.+| .+++++.+....+.++|..+.+.+.
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G--Rv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRG--RVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889988888888888888899999999 7788888877777777777766665
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-23 Score=201.44 Aligned_cols=334 Identities=11% Similarity=0.072 Sum_probs=187.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhC---CCHHHH---HHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 28 YYGSGHMLNDITAACWFTYLLLFLTDIG---LSPRGA---AAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~s~~~~---g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
.-.++.+....+...+....|...+|++ .+..+. +.+.+...+...++++++|+++||+||||.++. +.+.+.
T Consensus 26 ~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~-~~~~~~ 104 (432)
T PRK10406 26 GASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI-SVCMMC 104 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHH
Confidence 3345666666666665444455555553 555544 444555556666999999999999999997543 444343
Q ss_pred HHHHHHH-------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 013324 102 VSFSSVF-------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 156 (445)
Q Consensus 102 ~~~~~~~-------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 156 (445)
++...+. +.+.......+++.|..+ +++|+++.+....+...|.+++..+...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p-~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 105 FGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV-EGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322210 111222333456677765 68899998888777777777776665444
Q ss_pred HHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHH-HHHH
Q 013324 157 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML-TRLV 235 (445)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 235 (445)
.....+.+ ....|||+.|.+.++.+++...+ ....||+++.++++ .+.+.++++++|||+.+...+...+ ....
T Consensus 184 ~~~~~~~~--~~~~gWr~~F~i~~~~~ll~~~~-~~~~~e~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 258 (432)
T PRK10406 184 QQTLEDAE--LREWGWRIPFALGAVLAVVALWL-RRQLDETSQQETRA--LKEAGSLKGLWRNRRAFIMVLGFTAAGSLC 258 (432)
T ss_pred HHhCCHHH--HhccchHHHHHHHHHHHHHHHHH-HhcCCCCchHHHhh--hcccccHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33221100 02469999998877766655433 33455543221111 1112346788899887765554433 3556
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhh-c-cCchh
Q 013324 236 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI-L-PMNMS 312 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 312 (445)
.+....|+|.|+++..|.+..+.+.......+...++.++.+++ +|+.+ |+.+....++..+....... . ..++.
T Consensus 259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~gr--r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (432)
T PRK10406 259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGR--RTSMLCFGSLAALFTVPILSALQNVSSP 336 (432)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 66778899999998888887777666666566666777776753 33333 44444433332222221111 1 11223
Q ss_pred HHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHH-HHHHHHHHHHHH
Q 013324 313 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK-MSCGIAVYVLQS 372 (445)
Q Consensus 313 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-ig~~i~~~l~~~ 372 (445)
+..+....+..+..+...+....+..+.+|+|.+| ...|+.+.... +.+...+.+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~--t~~g~~~~~g~~~~g~~~p~~~~~ 395 (432)
T PRK10406 337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRA--LGVGLSYAVANALFGGSAEYVALS 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc--hhhhHHHHHHHHHHHhHHHHHHHH
Confidence 32222222222333333444556777889999999 77776554433 333345554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=204.33 Aligned_cols=332 Identities=12% Similarity=0.078 Sum_probs=203.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~ 103 (445)
..+.+....+.....+....+++|.|++|. |.+++++|++.+++.+...+.+|+.|+++||+||||.++..........
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF 82 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 445666677777888889999999999886 9999999999999999999999999999999999998654322221111
Q ss_pred HHH-H-----------H--------HHHhhhhhHhhhhhhcccC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013324 104 FSS-V-----------F--------GWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 162 (445)
Q Consensus 104 ~~~-~-----------~--------~~~~~~~~~~al~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 162 (445)
... . + ..+....+......+...+ .++++...+.......+|..+++.+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~----- 157 (396)
T TIGR00882 83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILF----- 157 (396)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhh-----
Confidence 000 0 0 0011111111112222221 122333444444555677777777766542
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccc------cCCcchHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 013324 163 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYYQVALVYMLTRLVV 236 (445)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (445)
..+|++.|.+.+++.++..++.+...+|+++++++ +++++..++.++++|||+++...+..+......
T Consensus 158 ------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 231 (396)
T TIGR00882 158 ------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVY 231 (396)
T ss_pred ------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 24789998887777776655554444443221110 111223356788999999876665555544445
Q ss_pred HHHHHHHHHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCch
Q 013324 237 NVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNM 311 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (445)
.....+.+.|+++.. +.+....+.......+...++....++ +.||+ |+.+.++..+.++....... .++
T Consensus 232 ~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~---l~~r~g~~~~l~~~~~l~~l~~~~~~~--~~~ 306 (396)
T TIGR00882 232 DVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPL---IINRIGAKNALLIAGTIMSVRIIGSSF--ATT 306 (396)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccchhHHHHHHHHHHHHHHHHh--cCC
Confidence 555556777777654 334444555555555556666666664 34443 55666666666665554443 235
Q ss_pred hHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhH-HHHHHHHHHHHHHHHHHHcc
Q 013324 312 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+..++..++.|++.+........+..+..++|.++ +..+. +++..++|..+++.+.+.+.
T Consensus 307 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--t~~~~~~~~~~~lg~~~~~~l~G~l~ 368 (396)
T TIGR00882 307 ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSA--TIYLIGFQFAKQLAMIFLSTLAGNMY 368 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEE--EeehHHHHHHHHHHHHHHHHhHHHHH
Confidence 666667777888887766666666666667777776 44444 55677777777776666654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-23 Score=205.51 Aligned_cols=333 Identities=12% Similarity=0.051 Sum_probs=200.8
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
++......++.+...+........+|.+.+|+|+|+.+.+++.+++.+...+++|+.|+++||+|||+.+++ +.+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~-~~~~~~~ 95 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW-SIVAYSV 95 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH-HHHHHHH
Confidence 344444555655556666666666676666779999999999999999999999999999999999987544 4444444
Q ss_pred HHHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013324 103 SFSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 165 (445)
Q Consensus 103 ~~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 165 (445)
+.... + +.+........++.+..+ +++|+++.++...+..+|.++++.+.+.+.
T Consensus 96 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~-------- 166 (426)
T PRK12307 96 GTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWP-KHLKSKASAFLVSGFGIGNIIAAYFMPSFA-------- 166 (426)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCC-HhHhhHhhhHHHHHHhHHHHHHHHHHHHHc--------
Confidence 33322 1 112223334455566664 778999999988888888887766655443
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc-c---ccC--Cc----chHHHHHHHHhchHHHHHHHHHHH---H
Q 013324 166 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-G---LRG--NS----HARISWAYWFKKILYYQVALVYML---T 232 (445)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~-~---~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~---~ 232 (445)
+..+||+.+.+..+. ++..+......||+++.+ + +++ ++ ..+..+++++|+|.++........ .
T Consensus 167 --~~~~w~~~f~i~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (426)
T PRK12307 167 --EAYGWRAAFFVGLLP-VLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSI 243 (426)
T ss_pred --ccCCHHHHHHHHHHH-HHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 246899998764332 222222222234432110 0 000 00 112356778888877654332222 2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCch
Q 013324 233 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNM 311 (445)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (445)
.........++|.|+++ .|.++...+.......++.+++.++.+++ +|+.+ |+.+..+.++..+..+.....+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (426)
T PRK12307 244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGL--KKTFSIGLLMSFLFIFPLFRIPQDN 320 (426)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 22223356788988876 48887777777777778888888887754 33322 5555566555544444333322222
Q ss_pred hHHHHHHHHHHHHHH--hHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 312 SAFMYVLAIFVGIAN--ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 312 ~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
.+. ....+.+++. ....+....+..+..|++++| .+.|+.+....+|+.+++.+.+.+.+
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 321 YLL--LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG--LGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHH--HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh--hhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 222 2222333322 122233445566778888888 77787777778888888887777653
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=206.42 Aligned_cols=321 Identities=17% Similarity=0.217 Sum_probs=220.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH-HHHHH
Q 013324 31 SGHMLNDITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-FSSVF 108 (445)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~-~~~~~ 108 (445)
+..+...+......+.+|.++. ++|.|+.++|++.+++.+...+.+|+.|+++||+||||. ++.+.+..+++ ....+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-LIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-EeehhhhhhhHHHHhhh
Confidence 4456667777788888885554 459999999999999999999999999999999999996 44444444444 22222
Q ss_pred ----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHH
Q 013324 109 ----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 172 (445)
Q Consensus 109 ----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~ 172 (445)
+.+.......+++.+..+ +++|++..+....+..+|.++++.+++.+. +..+|
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~----------~~~~~ 150 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFP-PEERGRAFGILSAGFSLGSILGPLLGGFLI----------SYFGW 150 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CHCHH
T ss_pred hhhHHHHhhhccccccccccccccccccccccch-hhhhhhccccccchhhhhhhcccchhhhhh----------hcccc
Confidence 223444555667778776 578999999999999999988877776653 25689
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccc-cCCcc---hH----HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 173 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSH---AR----ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 244 (445)
Q Consensus 173 ~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
|+.+.+.+++.++..++.....+|++.++++ +++++ .+ +.++.++++|.+|......+...........+.|
T Consensus 151 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T PF07690_consen 151 RWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLP 230 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccc
Confidence 9999888888877766533333333222211 11111 11 1256777888776444455555556667888999
Q ss_pred HHHHhhhccc-chhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHH
Q 013324 245 FYVINDLRMG-QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIF 321 (445)
Q Consensus 245 ~~~~~~~g~~-~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 321 (445)
.|+++..|.+ ..+.+.......+...++.++.+++ +|+.+ ++..........+....+.... .++.++.+...++
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (352)
T PF07690_consen 231 LYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGR--RRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFL 308 (352)
T ss_dssp HHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHH
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9988889999 6777777777777777778777754 33332 2333333333344434443333 2244555667778
Q ss_pred HHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHH
Q 013324 322 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV 367 (445)
Q Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~ 367 (445)
.|++.+...+....+..+..|++++| .+.|+.+....+|..+||
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 309 IGFGFGIVFPILFSLIQELVPPEYRG--TAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCHHHHHHHHCCCHTCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHCC
Confidence 99999998998999999999999999 999999999999998886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-23 Score=201.52 Aligned_cols=322 Identities=13% Similarity=0.047 Sum_probs=203.4
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~ 103 (445)
+..+....+.+...+....+++++|.+.+|+|.|++++|++.+.+.+...+++|+.|+++||+||||.+.+ +.+....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~-~~~~~~~~ 84 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYL-ASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44667788888999999999999999999999999999999999999999999999999999999998554 34444433
Q ss_pred HHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 013324 104 FSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 166 (445)
Q Consensus 104 ~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 166 (445)
.... + +.+.......+.+.+..+ +++|++..+....+..+|..+++.+++.+.....
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~----- 158 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGT-SRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM----- 158 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-----
Confidence 3322 1 111222222333445443 6688999998888888888888877766543210
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 167 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY 246 (445)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (445)
....|+...... . +..++ +...+|++. ++++ .++.++.+|||.++......+...........++|.|
T Consensus 159 -~~~~~~~~~~~~---~-~~~~~-~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 226 (381)
T PRK03633 159 -SVLPWVTGLVLA---A-ILPLL-FTRILNQQA--ENHD----STSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLY 226 (381)
T ss_pred -chHHHHHHHHHH---H-HHHHH-HhcccCCCC--CCCC----CCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123343322111 1 11111 111222111 1111 1234567888887754443444444555566788988
Q ss_pred HHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 013324 247 VINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI 324 (445)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 324 (445)
.++ .|.+....+.......++.+++....++ +.||+ |+.+..+..+..++..... . .. .......+.|+
T Consensus 227 ~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~---l~dr~~~~~~l~~~~~~~~~~~~~~~--~--~~-~~~~~~~l~g~ 297 (381)
T PRK03633 227 LNH-QGMSDASIGFWMALLVSAGILGQWPIGR---LADRFGRLLVLRVQVFVVILGSIAML--S--QA-AMAPALFILGA 297 (381)
T ss_pred HHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHH---HHHHcCcHHHHHHHHHHHHHHHHHHh--h--hH-HHHHHHHHHHH
Confidence 876 5888877777777777778888877774 44444 5555556555555444332 1 11 12233445566
Q ss_pred HHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 325 ANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
+.....|...+...+..|+++.+ ...+..++...+|..+|+.+.+.+.+
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~igp~~~G~l~~ 346 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELV--AMNQALLLSYTVGSLLGPSFTAMLMQ 346 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777766777776666 55666666777788888777776653
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-23 Score=199.65 Aligned_cols=318 Identities=9% Similarity=-0.026 Sum_probs=203.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCc----hHHHHHHHHHHHHHHHHH-
Q 013324 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF----KIWHGAGSVLVAVSFSSV- 107 (445)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grr----r~~ll~~~i~~~~~~~~~- 107 (445)
-++.....++..+++|.|++|.|.|++++|++.+++.+...+.+|++|+++||+||| |...+... .........
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTL-LFAVAFWFGA 91 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH-HHHHHHHHhc
Confidence 444456678888999999999999999999999999999999999999999999984 32221111 111111000
Q ss_pred ---H-----------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH
Q 013324 108 ---F-----------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 173 (445)
Q Consensus 108 ---~-----------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 173 (445)
+ +.+.......++..+. +++|++..+....+..+|..+++.+++.+.+ ..|||
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~---~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~----------~~g~~ 158 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW---QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS----------WFGEQ 158 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH---HhhccCCcchHHHHHHHHHHHHHHHHHHHHH----------HcChh
Confidence 0 0111111122333333 3456777777777778888888888887753 45899
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccc-ccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013324 174 WIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 252 (445)
Q Consensus 174 ~~~~~~~~~~~i~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 252 (445)
..+++.++..++..+.. +..||++++++ ++++++.++++++++|||+++...+..++..........+.|.|..+ .|
T Consensus 159 ~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g 236 (382)
T PRK11128 159 AILWILTAGVASMLLGQ-LLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AG 236 (382)
T ss_pred HHHHHHHHHHHHHHHHH-HccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CC
Confidence 88876665444333332 33444322111 11111224567899999999887777766666666777888998865 78
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhh
Q 013324 253 MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMM 330 (445)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (445)
.+....+.......++.++..++.+ |+.||+ |+.+..+.+...++...... .++.|..++..++.|++.+...
T Consensus 237 ~s~~~~g~~~~~~~~~~~~~~~~~g---~l~~r~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~ 311 (382)
T PRK11128 237 YSASTIGYLWSLGVVAEVLIFAFSN---RLFRRWSARDLLLLSAICGVVRWGLMGS--TTALPWLIVIQILHCGTFTVCH 311 (382)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHH
Confidence 8887777776666666666666655 445554 55566666666666554444 3467777778889999998877
Q ss_pred hhHhhhcccccccccccchhHHhHHH-HHHHHHHHHHHHHHHHcc
Q 013324 331 VTGISMQNVLVGEDLSGCAFVCGTLS-FLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~ig~~i~~~l~~~~~ 374 (445)
+....+..+. ++++.+ ...+..+ +...+|..+|+.+.+.+.
T Consensus 312 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 312 LAAMRYIAAR-PGSEVI--RLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHHHHHHC-CHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776655 344456 5566554 444455556665555544
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-23 Score=202.04 Aligned_cols=309 Identities=14% Similarity=0.084 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc-----CCchHHHHHHHHHHHHHHHHH-H------
Q 013324 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSV-F------ 108 (445)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~-----Grrr~~ll~~~i~~~~~~~~~-~------ 108 (445)
..+...+|.+.+|.|+|.+++|++..+ .+...+ ++++|+++||+ ||||++++.+.+..+++.... +
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 455667899999999999999999766 455555 99999999997 999998776555555443222 1
Q ss_pred -------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 013324 109 -------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI 175 (445)
Q Consensus 109 -------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 175 (445)
..+...++..++++|..+ +|+|+++.++...+..+|.++++.++..+....+..+ ...++||+.
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~--~~~~~wr~~ 159 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILS-DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT--GLITLWGYI 159 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccccHHH
Confidence 233455677888889885 7889999999999999999999888877765432111 124569999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccc--CCcchHHHHHHHHhchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013324 176 AYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKIL---YYQVALVYMLTRLVVNVSQAYLAFYVIND 250 (445)
Q Consensus 176 ~~~~~~~~~i~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (445)
|.+.++..++..+..++..||++++++++ ++++.++.+++++|||. ++...+..++..........+.|.|+++
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 238 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD- 238 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 98887776666655554566753321111 11223456777888875 6666666666667777788899999987
Q ss_pred hcccchhhhHHHHHHH-HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc--C-------chhHHHHHHH
Q 013324 251 LRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--M-------NMSAFMYVLA 319 (445)
Q Consensus 251 ~g~~~~~~~~~~~~~~-~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~ 319 (445)
.|.++.+.+......+ ++.+++.++.+++ +|+++ |+.+..+.++.++......+.. . ++.+......
T Consensus 239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (356)
T TIGR00901 239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNI--LYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTI 316 (356)
T ss_pred cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHH
Confidence 7998888776665544 4566777777754 33333 4555555555555544333321 1 2345556667
Q ss_pred HHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHH
Q 013324 320 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLD 359 (445)
Q Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 359 (445)
++.+++.+...+...++..+..|++++| ..+|+++...
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~ 354 (356)
T TIGR00901 317 TLEAVTGGLGTVAFVAFLSKLSNPKFGA--TQMALLSSLS 354 (356)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCCccH--HHHHHHHHHH
Confidence 7889999999999999999999999999 7777765543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=204.56 Aligned_cols=345 Identities=9% Similarity=-0.033 Sum_probs=217.8
Q ss_pred CCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
|..|+..+...++-+....+...+....|...+|+|+|+++.|++.+++.+..++++++.|+++||+||||.+. .+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~-~~~~~ 82 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIA-GIMVL 82 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHH-HHHHH
Confidence 45566666666666666777777776777655667999999999999999999999999999999999999754 44444
Q ss_pred HHHHHHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013324 100 VAVSFSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 162 (445)
Q Consensus 100 ~~~~~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 162 (445)
..++..+. + +.+.........+.+..+ +++|++..++.+.+..+|.++++.+++.+.....
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~- 160 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFP-AYFRARANALFMIAMPVTMALGLILSGYILALDG- 160 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 44333322 2 111111222234556554 6789999999998888999888888776653100
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc----c-cc---------C------C-----c---chHHHHH
Q 013324 163 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM----G-LR---------G------N-----S---HARISWA 214 (445)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~----~-~~---------~------~-----~---~~~~~~~ 214 (445)
..+..|||+.+.+.++.+++..++.++..||++++. + ++ + . + ..+..++
T Consensus 161 ---~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (412)
T TIGR02332 161 ---LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLR 237 (412)
T ss_pred ---CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHH
Confidence 002368999999887877766665656667754221 0 00 0 0 0 0012233
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHH
Q 013324 215 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND-LRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSA 292 (445)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~ 292 (445)
+++ ++.++...+.+++.........+|+|.|+++. .|.+....+.......++.+++.++.+++ +|+.+| |.....
T Consensus 238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r-~~~~~~ 315 (412)
T TIGR02332 238 EIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER-KHHTAL 315 (412)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc-HHHHHH
Confidence 333 56777777777777777778889999999873 46676777777777788888888888854 232222 222333
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHH
Q 013324 293 GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372 (445)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~ 372 (445)
...+..++...... .. +....+....+.+++.....+.......+..|++++| .+.|+.+....+|+++++.+.+.
T Consensus 316 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~a~g~~~~~~~~g~~~~p~~~g~ 391 (412)
T TIGR02332 316 PYLFAAAGWLLASA-TD-HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARA--IAIAVINATGNIGSALSPFLIGI 391 (412)
T ss_pred HHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHH--HHHHHHHHhhhhhhhhhhhhccc
Confidence 33333333222222 21 2222222222333333322333334445567888888 88999999999999999998877
Q ss_pred cccc
Q 013324 373 YQSM 376 (445)
Q Consensus 373 ~~~~ 376 (445)
+.+.
T Consensus 392 i~~~ 395 (412)
T TIGR02332 392 LKDA 395 (412)
T ss_pred cccc
Confidence 7644
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-22 Score=194.80 Aligned_cols=320 Identities=12% Similarity=0.044 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H----
Q 013324 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F---- 108 (445)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~---- 108 (445)
....+......+.+|.+.+++|.|++++|++.+++.+...+++++.|+++||+||||.++. +.....++.... +
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~~~~~ 94 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLA-GLSLFALGSLGMLWVESA 94 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHH-HHHHHHHHHHHHHHhcCH
Confidence 3344555555666666677779999999999999999999999999999999999997543 333333333222 1
Q ss_pred ------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 013324 109 ------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 176 (445)
Q Consensus 109 ------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 176 (445)
+.........+++.+..+ +++|.+..+.......++..+++.+++.+.+ ..+||+.+
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~----------~~g~~~~~ 163 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYP-AQKANRVFATIMPLVALSPALAPLLGAWLLN----------HFGWQAIF 163 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHH
Confidence 111122233455566654 5556666666666666777777777766542 45899988
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 013324 177 YSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 256 (445)
Q Consensus 177 ~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (445)
.+.+++.++..+...+..+|++ ++ ++++.+.++++++|+|+++...+...+..........+.|.+.++ .|.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~ 238 (401)
T PRK11043 164 ATLFAITLLLILPTLRLKPSKK-AR---KQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPA 238 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-cc---ccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHH
Confidence 8777776666555443333322 11 112234567888999987765555444444555566778888765 688888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHH---HHHHhhccCchhHHHHHHHHHHHHHHhHhhhh
Q 013324 257 AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC---GAGILILPMNMSAFMYVLAIFVGIANALMMVT 332 (445)
Q Consensus 257 ~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (445)
+.+.......++.+++++..+++ +|+.+ |+..........++ .........++.+..++...+.+++.+...+.
T Consensus 239 ~~g~~~~~~~~~~~~g~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (401)
T PRK11043 239 DIGLSYVPQTIAFLVGGYGCRAALQKWGG--EQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPI 316 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666777777776653 34333 33222222222222 12222222234444455566778888887776
Q ss_pred HhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 333 GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 333 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
......+..| +++| .+.++.+..+..+...++.+.+.+.+
T Consensus 317 ~~~~~~~~~~-~~~g--~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 317 VVAQALRPFP-QATG--KAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHhhhCc-ccCh--HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 6665544444 4677 88889888888888888888887764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=206.02 Aligned_cols=315 Identities=11% Similarity=-0.029 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H-------------
Q 013324 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F------------- 108 (445)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~------------- 108 (445)
+..++|.+..++|.++++.+++.+.+.+...+..|+.|+++||+||||.++. +.+....+...+ +
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIA-GGLLASLGMILASFSSNVIELYLTAGF 116 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHh-hHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4556777778889999999999999999999999999999999999997543 333333332222 1
Q ss_pred ----HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Q 013324 109 ----GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 184 (445)
Q Consensus 109 ----~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 184 (445)
+.+....+..+++.+.. +++|+++.++...+..+|..+++.+++.+.. ..|||+.|.+.+++.+
T Consensus 117 l~G~~~~~~~~~~~~~~~~~~--~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~----------~~gwr~~f~~~~~~~~ 184 (455)
T TIGR00892 117 ITGLGLAFNFQPSLTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLFE----------SFGWRGSFLILGGLLL 184 (455)
T ss_pred HHHhcchhhhhHHHHHHHHHH--HhhHHHHHHHHHhcccHHHHHHHHHHHHHHH----------HhChHHHHHHHHHHHH
Confidence 01111233334445544 4689999999988888888877776666542 4689999988877766
Q ss_pred HHHHHHhcccccccc----ccc--c----c--CCc----chH---HHH--HHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 185 CFVGIFLSRTEEPRL----KMG--L----R--GNS----HAR---ISW--AYWFKKILYYQVALVYMLTRLVVNVSQAYL 243 (445)
Q Consensus 185 i~~~~~~~~~~e~~~----~~~--~----~--~~~----~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (445)
+..+..++..++++. +++ + + .++ +.. .+. .+++|+|+++......++..........++
T Consensus 185 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 264 (455)
T TIGR00892 185 HCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFL 264 (455)
T ss_pred HHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHH
Confidence 554443333322110 000 0 0 000 000 111 246788888877776666666666777889
Q ss_pred HHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHh--hhhhhH-HHHHHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 013324 244 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWT--GQRLKA-YYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 320 (445)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~--~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (445)
|.|.++ .|.+..+.+......+++.+++.++.+++.+. .++.++ .+..+..+..++.+.... .++.+..++..+
T Consensus 265 ~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~~i~~~ 341 (455)
T TIGR00892 265 VPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL--AGDYTGLVIYCI 341 (455)
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHH
Confidence 999876 69998888888888888888888877754221 111122 222222222222222222 235566666778
Q ss_pred HHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 321 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
+.|++.+...+...++..+..|++++| ...++++....+|+.+|+.+.+.+.+
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~lg~~igp~i~G~l~~ 394 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFS--SAVGLVTIVECCAVLIGPPLAGRLVD 394 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHh--hHHhHHHHHHHHHHHccccceeeeeh
Confidence 889998888887778877888888888 88899999999999999988876653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=203.72 Aligned_cols=327 Identities=12% Similarity=0.040 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------
Q 013324 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------- 108 (445)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------- 108 (445)
...........+|.+.+++|.++.+.|++.++..+...+++++.|+++||+||||.+++ +.+...++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (379)
T TIGR00881 7 YYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI-GLILCAIVNLFFGFSTSLWV 85 (379)
T ss_pred HHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH-HHHHHHHHHHHHHHhhhHHH
Confidence 34455556566777666779999999999999999999999999999999999987544 4444433333221
Q ss_pred ----------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHH-HHHHHHHHhhccccccchhhHHHHHHH
Q 013324 109 ----------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHADLENQYRWIAY 177 (445)
Q Consensus 109 ----------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~ 177 (445)
+.+.......+++.+..+ +++|++..++...+..+|..+++ .++..+. ...+||+.+.
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~ 154 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGIA----------ELYSWHWVFI 154 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcC-HhhheeeEeehhccchhHHHHHHHHHHHHHH----------hcCCchhHHH
Confidence 111223334456666664 67899999988888888888877 3433332 2458999888
Q ss_pred HHHHHHHHHHHHHhcccccccccc----c-c---cC-----------CcchHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 013324 178 SSIFIGCCFVGIFLSRTEEPRLKM----G-L---RG-----------NSHARISWAYWFKKILYYQVALVYMLTRLVVNV 238 (445)
Q Consensus 178 ~~~~~~~i~~~~~~~~~~e~~~~~----~-~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (445)
+.+++.++..++..+..||+++++ + + ++ .+..+...++++|+|.++...+..++.......
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG 234 (379)
T ss_pred HHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 777766666555555555432110 0 0 00 011223456778899888877777777777777
Q ss_pred HHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHH-HHHHHHHHHHHHHhhccCchhHHHH
Q 013324 239 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYS-AGGVLWVFCGAGILILPMNMSAFMY 316 (445)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (445)
...+.|.|+++..|.++.+.+.......++.+++.++.+++ +|..+|.+.... ........+.......+..+.+...
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (379)
T TIGR00881 235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDL 314 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Confidence 88899999998889998888888888888888888888865 333332222222 1222222222222222222333334
Q ss_pred HHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 317 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 317 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
....+.|+......+....+..+..|++++| .+.|+.+....+|..+++.+.+.+.+.
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 315 ICLFALGFLVYGPQMLIGVIASELAPKKAAG--TAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhcCcchhH--HHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 4444555544444444455667778889989 889999999999988888877766543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=204.49 Aligned_cols=313 Identities=11% Similarity=0.020 Sum_probs=189.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------------
Q 013324 48 LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------------------- 108 (445)
Q Consensus 48 ~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------------------- 108 (445)
.++++|.|+|+++.|++.+++.+...+++++.|+++||+||||.++. +.+...++.....
T Consensus 50 ~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 128 (438)
T TIGR00712 50 MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPA-GLILSAAVMLLMGFVPWATSSIAIMFVLLFLN 128 (438)
T ss_pred hHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHH-HHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 44566679999999999999999999999999999999999987443 3333333322110
Q ss_pred --HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHH
Q 013324 109 --GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCF 186 (445)
Q Consensus 109 --~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 186 (445)
+.+....+....+.+..+ +++|+++.++.+.+..+|..+++.+...... ...+||+.+.+.+++.++.
T Consensus 129 g~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~---------~~~~w~~~f~~~~~~~~i~ 198 (438)
T TIGR00712 129 GWFQGMGWPPCGRTMVHWWS-QSERGTIVSIWNCAHNIGGGIPPLLVLLGMA---------WFNDWHAALYFPAICAIIV 198 (438)
T ss_pred HHHhhcchHHHHHHHHHhcC-cccchhHHHHHHHHHHhHhHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHHHH
Confidence 111122334455566554 7789999999888887777776655443322 2358999998877777766
Q ss_pred HHHHhcccccccccc-----c--cc-------CC----cchHHH-HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 187 VGIFLSRTEEPRLKM-----G--LR-------GN----SHARIS-WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV 247 (445)
Q Consensus 187 ~~~~~~~~~e~~~~~-----~--~~-------~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (445)
.+...+..||+++++ + ++ ++ .+.++. .+.++||+.++...+...+.....+....|.|.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 278 (438)
T TIGR00712 199 ALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYL 278 (438)
T ss_pred HHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 555555555533210 0 00 00 011111 12467888888776666666666667788999999
Q ss_pred HhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHH---HHHHHHHhhccCchhHHHHHHHHHHH
Q 013324 248 INDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW---VFCGAGILILPMNMSAFMYVLAIFVG 323 (445)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~g 323 (445)
++..|+++.+.+.......+..+++.++.+++ +|+.++ |+.. .+.... .++...+...+..+.+......+..|
T Consensus 279 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 356 (438)
T TIGR00712 279 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG-NRGA-TGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIG 356 (438)
T ss_pred HHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cccH-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 98889998888887777888888888888864 444332 2222 122111 11212222212223333333333444
Q ss_pred HHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHH-HHHHHHHHHHccc
Q 013324 324 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS-CGIAVYVLQSYQS 375 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig-~~i~~~l~~~~~~ 375 (445)
++.............+..|++.+| .+.|+.+....+| ..+++.+.+.+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~gg~~~gp~l~G~l~~ 407 (438)
T TIGR00712 357 FLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVGYTVD 407 (438)
T ss_pred HHHccHHHHHHHHHHHhcChhhee--eehhhhchHHHhhhhhhcchhHHHHHH
Confidence 432222222223445667888888 7788877776665 3567776666554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=199.06 Aligned_cols=345 Identities=13% Similarity=0.054 Sum_probs=199.8
Q ss_pred CchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-HHH-----HHHHHhhhhhhhhhhhccCCchHHHH
Q 013324 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM-LSG-----QIADGFATIFIGELIDRFGHFKIWHG 94 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~-~~~-----~i~~~i~~p~~G~l~Dr~Grrr~~ll 94 (445)
.|++-.....++.+....+...+....|...+|++.++.+.+.+. +.. .+...+++++.|+++||+||||.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 344555667788888888888888888988888888777665443 222 23334678999999999999998654
Q ss_pred HHHHHHHHHHHHH-H------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHH
Q 013324 95 AGSVLVAVSFSSV-F------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 149 (445)
Q Consensus 95 ~~~i~~~~~~~~~-~------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 149 (445)
.. +...++...+ + +.+....+...++.|..+ +++|++..++...+...|..++
T Consensus 92 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 92 TL-SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT-PGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC-cccchHHHHHHHHHHHHHHHHH
Confidence 33 3333332222 1 001112223455677775 7889999999888877887777
Q ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHH-HH
Q 013324 150 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVA-LV 228 (445)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 228 (445)
+.++..+...+.... .+..|||+.|.+..+..++ ..+.....||+++..+++++.+.++.+++..|+++.+... ..
T Consensus 170 ~~~g~~l~~~~~~~~--~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (434)
T PRK15075 170 ALLGYLLNQWLSPAQ--MAEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGMLM 246 (434)
T ss_pred HHHHHHHHHhCCHHH--HhccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHHH
Confidence 777766544321100 0246899998764333222 2222222334221111111112223344555666544332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH-HHhh
Q 013324 229 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA-GILI 306 (445)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~-~~~~ 306 (445)
..+..........|.|.|+++..|++..+.+.......++.+++.++.+++ +|+.+ |+....+..+...... ....
T Consensus 247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~--r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGR--RPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHH
Confidence 333445566678899999998889988877777777777788888887754 33333 4444444333222111 1111
Q ss_pred c-cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhH-HHHHHHHHHHHHHHHHHHcc
Q 013324 307 L-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 307 ~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ig~~i~~~l~~~~~ 374 (445)
. ...+.........+.+++.+...+....+..+..|++.+| ...++ +++...+++.+++.+.+.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg--~~~g~~~~~~~~~~g~~~p~~~g~i~ 392 (434)
T PRK15075 325 LVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRT--AGFSLAYSLATAIFGGFTPAISTWLI 392 (434)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccc--hheeHHHHHHHHHHhhhHHHHHHHHH
Confidence 1 2222223333344556666666665666777788888888 55555 34445455566666665544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-22 Score=202.40 Aligned_cols=340 Identities=13% Similarity=0.010 Sum_probs=201.0
Q ss_pred CchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 013324 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~ 100 (445)
..++......++.+...+........+|.+.+++|+|+.+.+++.+.+.+...++.++.|+++||+||||.++ .+.+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~ 95 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMV-ISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH-HHHHHH
Confidence 3445556677888888888888888888888888999999999999999999999999999999999998754 344333
Q ss_pred HHHHHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013324 101 AVSFSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 163 (445)
Q Consensus 101 ~~~~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 163 (445)
.++.... + +.+.......+++.+..+ +++|++..+....+..+|..+++.+.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----- 169 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQVYSLVVP----- 169 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3333222 1 112223334455566664 6789999998888888888888777766542
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccc-ccCCcchHHHHHHHHhch-HH-------------------
Q 013324 164 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKI-LY------------------- 222 (445)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~-~~------------------- 222 (445)
..+||+.+.+..+. ++..++.....||++..++ ++++.+.++..+...+++ ..
T Consensus 170 -----~~~w~~~f~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (496)
T PRK03893 170 -----VWGWRALFFIGILP-IIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAG 243 (496)
T ss_pred -----cCCHHHHHHHHHHH-HHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 46899988754333 2222233333444322111 111110011001001000 00
Q ss_pred -----HHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHH
Q 013324 223 -----YQV-----------------------------ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYIC 268 (445)
Q Consensus 223 -----~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 268 (445)
+.. ................++|.|++++.|.+..+.+.......++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~ 323 (496)
T PRK03893 244 NLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFG 323 (496)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 000 0000000001112456889999888899998888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccc
Q 013324 269 SFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGC 348 (445)
Q Consensus 269 ~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~ 348 (445)
.++++++.+++.++.+| |+.+..+..+..+..+........+.+.......+.+.......+....+..+..|++++|
T Consensus 324 ~~~g~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 401 (496)
T PRK03893 324 AAVGCCVGGFLGDWLGT-RKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRA- 401 (496)
T ss_pred HHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhh-
Confidence 89999888864222222 4555555544444433333222233333323222222222122333445566777888888
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 349 AFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 349 ~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
..+++.+....+|..+++.+.+.+.+.
T Consensus 402 -~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 402 -AGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred -cccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 777777777788888888877766543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-23 Score=199.94 Aligned_cols=326 Identities=13% Similarity=0.040 Sum_probs=209.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 013324 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (445)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~ 108 (445)
..+..+...........++|.+.++.|.++.+.|++.++..+...+++++.|+++||+||||.++. +.+...++.....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~ 100 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLW-SILLFSVFTLLCA 100 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH-HHHHHHHHHHHHH
Confidence 334444455555566666777777789999999999999999999999999999999999887543 3433333332221
Q ss_pred -----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhH
Q 013324 109 -----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 171 (445)
Q Consensus 109 -----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g 171 (445)
+.+....+..+++.+..+ +++|++..++...+..+|..+++.+++.+.. ..+
T Consensus 101 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~g 169 (398)
T TIGR00895 101 LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAP-KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP----------VFG 169 (398)
T ss_pred HccchHHHHHHHHHHhcccccchhhHHHHHHHHcC-HHhhchhHhhHhhHHHHHHHHHHHHHHHHhh----------ccc
Confidence 112233444566667664 6789999999988888888888877766642 457
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccc---c-c----------------------cc--CC-cchHHHHHHHHhch--
Q 013324 172 YRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M-G----------------------LR--GN-SHARISWAYWFKKI-- 220 (445)
Q Consensus 172 ~~~~~~~~~~~~~i~~~~~~~~~~e~~~~---~-~----------------------~~--~~-~~~~~~~~~~~~~~-- 220 (445)
|++.+.+.+++.++..++.....||++.. + + ++ ++ +..++..+.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhH
Confidence 88887766555554444444444443210 0 0 00 00 01112222233332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHH
Q 013324 221 -LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWV 298 (445)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~-~~~~~~~~~~~~ 298 (445)
..+...+...+..........+.| ++.++.|.++.+.+.......++.+++.++.+++ .||+ ++....+..+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~ 325 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWL---ADRLGPRVTALLLLLGA 325 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcchHHHHHHHHHHH
Confidence 233333344444555556667777 5555678888888888777888888888888854 3333 223333333333
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 299 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
+....... ...+.+..+...++.|++.+...+....+..+..|++++| ...|+.+....+|..+++.+.+.+
T Consensus 326 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 326 VFAVLVGS-TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRA--TGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHhHHhc
Confidence 32222222 1234555566677889988888888888888889999999 888999999999999999887764
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-21 Score=193.32 Aligned_cols=335 Identities=10% Similarity=0.063 Sum_probs=191.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-Hh--CCCHHHHHHHH-----HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 30 GSGHMLNDITAACWFTYLLLFLT-DI--GLSPRGAAAVM-----LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~-~~--g~s~~~~g~l~-----~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
.++.+....+........|.+.. ++ +.++. .|.+. ++..+...+++++.|+++||+||||++++ +.+.+.
T Consensus 28 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~-~~~~~~ 105 (438)
T PRK09952 28 FAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML-TVWMMG 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH-HHHHHH
Confidence 34444444444444444455554 33 67776 45553 35556677888999999999999998554 444444
Q ss_pred HHHHHHH-------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 013324 102 VSFSSVF-------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 156 (445)
Q Consensus 102 ~~~~~~~-------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 156 (445)
++..++. +.+........++.|..+ +++|++..+....+..+|.+++..+...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 106 IATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP-KNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332211 111112223345566665 67899998888888888888776665555
Q ss_pred HHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccc--c-CCc-chHHHHHHHHhchHHHHHHH-HHHH
Q 013324 157 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--R-GNS-HARISWAYWFKKILYYQVAL-VYML 231 (445)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~ 231 (445)
....+... ....+||+.|.+.++..++... .....+|+++..++ + ++. +.....+.++|+|+.+.... ..++
T Consensus 185 ~~~~~~~~--~~~~gWr~~f~~~~~~~l~~~~-l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 261 (438)
T PRK09952 185 SMMTTDEQ--FLSWGWRIPFLFSIVLVLIALW-VRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLC 261 (438)
T ss_pred HHhCCHHH--hhccChHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHH
Confidence 43322110 0246899999877666544332 22334554321111 0 011 11112234667776665443 3444
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhc--c
Q 013324 232 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL--P 308 (445)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~ 308 (445)
.....+....|.|.|.++..|.+...........++...++.++.+++ +|+.+ |+.+..+.++..++....... .
T Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~gr--r~~~~~~~~~~~~~~~~~~~~~~~ 339 (438)
T PRK09952 262 ELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGR--RRVYITGALIGTLSAFPFFMALEA 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455566677899999988888887654444444455566667777754 33333 455555555444333222221 1
Q ss_pred CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhH-HHHHHHHHHHHHHHHHHHcc
Q 013324 309 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 309 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+..+..+...++.+++.+...+....+..+..|.+.++ ...++ ++++..+|++++|.+.+.+.
T Consensus 340 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~--tg~g~~~~~~~~lgg~~~p~i~g~l~ 404 (438)
T PRK09952 340 QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY--SGAGVGYQVASVVGGGFTPFIAAALV 404 (438)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344344455667777777777778888888888887 45555 45556678888888777664
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-22 Score=190.40 Aligned_cols=304 Identities=16% Similarity=0.176 Sum_probs=233.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 013324 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (445)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~ 108 (445)
..+..+..........+.+|.+.++.|.++.+.+++.+...+...+.+|+.|+++||+||||. +..+.+...++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~-~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV-LLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh-hHHHHHHHHHHHHHHH
Confidence 445666777888888889999999999999999999999999999999999999999999996 4444444444433321
Q ss_pred -----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhH
Q 013324 109 -----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 171 (445)
Q Consensus 109 -----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g 171 (445)
+.+....+..++..|..+ +|+|++..++...+..+|..+++.+++.+.+ ..+
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~ 151 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAE----------SLG 151 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCC-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH----------Hhh
Confidence 122334555667777775 6789999999999999999998888877753 356
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013324 172 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL 251 (445)
Q Consensus 172 ~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (445)
|++.+.+.+++.++..+...+. + |+++...+..++..........+.|.+.++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (352)
T cd06174 152 WRWLFLILAILGLLLALLLLFL-L------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVL 206 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 8988877766666555443221 1 55666666677777777888889999998877
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhH-HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHh
Q 013324 252 RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALM 329 (445)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 329 (445)
|.+..+.+.......++..++.++.+++ +|..+ |+ .+..+..+..++.......+ +.+...+...+.|++.+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 282 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--RRLLLLIGLLLAALGLLLLALAP--SLALLLVALLLLGFGLGFA 282 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888864 33333 44 67777777777766665543 4666677788899999998
Q ss_pred hhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 330 MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
.+....+..+..|++++| ...++.+....+|..+++.+.+...+
T Consensus 283 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 283 FPALLTLASELAPPEARG--TASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred chhHHHHHHhhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888988889989988 88999999999999999998887764
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-21 Score=195.69 Aligned_cols=339 Identities=11% Similarity=0.091 Sum_probs=195.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhC--CCHH--HHHH--HHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIG--LSPR--GAAA--VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~s~~--~~g~--l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
.+.-.++.+....+........|..-++++ .++. .++. +.+++.+...++++++|+++||+||||.+++ +.+.
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~-~~~l 96 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAI-TIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHH
Confidence 344556777776666666555555555553 3332 2333 2577889999999999999999999998544 4444
Q ss_pred HHHHHHHH-H------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHH
Q 013324 100 VAVSFSSV-F------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 154 (445)
Q Consensus 100 ~~~~~~~~-~------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 154 (445)
++++..++ + +.+....+..+++.|..+ +++|+++.++...+..+|..+++.+..
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP-DRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322 1 122233344556677765 678999999888877788877776665
Q ss_pred HHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccc-----cc-CC----cchHHHHHHHHhc-hHHH
Q 013324 155 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LR-GN----SHARISWAYWFKK-ILYY 223 (445)
Q Consensus 155 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~-----~~-~~----~~~~~~~~~~~~~-~~~~ 223 (445)
.+...+.... ....|||+.|++.++++++..++ ....||++...+ ++ ++ ++.+.++++++++ ++.+
T Consensus 176 ~~~~~~~~~~--~~~~gWR~~f~i~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (490)
T PRK10642 176 LISTIVGEAN--FLDWGWRIPFFIALPLGIIGLYL-RHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSL 252 (490)
T ss_pred HHHHhcCHHH--hcCccHHHHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHH
Confidence 5443322100 02479999998876655544433 345666432110 00 00 0112245555553 2222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 013324 224 Q-VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 301 (445)
Q Consensus 224 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~ 301 (445)
. .....++....++....|+|.|+++..|++....+.......++.+++.++.+++ +|+++ |+.+..+.++..+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~~~~~~~~~~~~~ 330 (490)
T PRK10642 253 LTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGR--RPFVILGSVALFVLA 330 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHH
Confidence 2 2222333445666778899999988888887666666566667777777777754 33333 455555544332222
Q ss_pred HH-HhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhH-HHHHHHHHHHHHHHHHHHcc
Q 013324 302 AG-ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 302 ~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ig~~i~~~l~~~~~ 374 (445)
.. +.....++....++..++.+++.+...+....+..+..|++.|| ...++ +++. .+++.+++.+.+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg--~~~g~~~~~~-~~~g~~~p~i~g~l~ 402 (490)
T PRK10642 331 IPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRY--SALAAAFNIS-VLVAGLTPTLAAWLV 402 (490)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccch--HHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 22 22222233444445555666666555555555666678999998 66665 4443 445567777766654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=197.91 Aligned_cols=329 Identities=11% Similarity=0.034 Sum_probs=201.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~ 105 (445)
+......+.....+....+++|.++++ +|+|+.+.|++.+++.+...+.+++.|+++||+||||.+++ +.+...++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~i~~~ 82 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL-SLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH-HHHHHHHHHH
Confidence 344555556677777888888875554 59999999999999999999999999999999999997544 3333333322
Q ss_pred HHH----------------HH-HhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Q 013324 106 SVF----------------GW-AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 168 (445)
Q Consensus 106 ~~~----------------~~-~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 168 (445)
... +. .....+..+++.+..+ +++|++..++......+|..+++.+++++..........+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFP-KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcC-HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 211 11 1122334455666664 67899999998877778888887777766543211000011
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHhcccccccccccccCCcc-----------hHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 013324 169 ENQYRWIA-YSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSH-----------ARISWAYWFKKILYYQVALVYMLTRLVV 236 (445)
Q Consensus 169 ~~g~~~~~-~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (445)
..+||+.+ ...+++..+..++.....+|++.+++++++.+ ..+..++.+++|+++...+...+.....
T Consensus 162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (366)
T TIGR00886 162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSF 241 (366)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 34799887 43344443333333333343221111111000 1114567788888887777666666666
Q ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCc--hhH
Q 013324 237 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN--MSA 313 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 313 (445)
.....+.|.|+++..|.++.+.+.......+..+++.++.+++ +|+++ |+....+..+...+...+.+...+ +.+
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (366)
T TIGR00886 242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG--ARKLLMSFLGVAMGAFLVVLGLVSPLSLA 319 (366)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc--chhHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 6778899999998889998888877777777778888777754 44333 344444444444443333332221 444
Q ss_pred HHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHH
Q 013324 314 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS 362 (445)
Q Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig 362 (445)
..+....+.+++.+...+....+..+..| +++| .++|+.+...++|
T Consensus 320 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~g 365 (366)
T TIGR00886 320 VFIVLFVALFFFSGAGNGSTFALVPHIFR-RATG--AVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHhccccchhhhcchhhch-hhcc--cHHHHHHHhccCC
Confidence 43444444555555555555555555554 6777 7888777666554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=193.41 Aligned_cols=345 Identities=12% Similarity=0.084 Sum_probs=257.0
Q ss_pred hHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHh-CC-------CHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFT-YLLLFLTDI-GL-------SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG 94 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-g~-------s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll 94 (445)
+....|.+-|++++.....+.+ ++|+|+++. +. +.+..|...+++.+..++..|+.|.++|+.|+||+++-
T Consensus 14 ~~~~sWilyD~~~~p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~ 93 (438)
T COG2270 14 KGIKSWILYDWGSSPFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFG 93 (438)
T ss_pred ccceeEEEeeccCCceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHH
Confidence 3444677778877776666654 669998874 33 23578999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHH--------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHH
Q 013324 95 AGSVLVAVSFSSVF--------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 154 (445)
Q Consensus 95 ~~~i~~~~~~~~~~--------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 154 (445)
........+..+.+ ++...++.+.++.++..+ +++-++.++.......+|+.+..+...
T Consensus 94 ~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~-k~~~~riS~lg~~~gylgs~i~li~~~ 172 (438)
T COG2270 94 FFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTT-KDNMGRISGLGWALGYLGSVILLIFVV 172 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcC-ccccCcccccccccccccchHHHHHHH
Confidence 55555544444433 444577888999998876 555566666666666667665444432
Q ss_pred HHHHhhcccc--------ccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccccc------CCcchHHHHHHHHhch
Q 013324 155 IVFSVSTAKT--------HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR------GNSHARISWAYWFKKI 220 (445)
Q Consensus 155 ~l~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~~~~~ 220 (445)
......+..+ ...+...-|..+.+.++..++..+..++.++|+++...+. .-++.++.+++..+++
T Consensus 173 ~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~ 252 (438)
T COG2270 173 LGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRK 252 (438)
T ss_pred HHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhccc
Confidence 2221111100 0012345688888888888888888888888765322111 1134556778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHH
Q 013324 221 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWV 298 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~ 298 (445)
+...+.+..+++.-+.++.......|..+++|.+..+..++.....+.+++|+++.|++ .+|+ |+++..+.++..
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~L---d~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFL---DERFGSKPVLMIGLVILS 329 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCceeehHHHHHHH
Confidence 98888899999999999999999999999999999998888888888999999998854 4444 677778887777
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 299 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
+.++...+.. ...-.++..++.|...|..++.+.++..+..|+++.| .++|++++..+.++.+||.+++.+...
T Consensus 330 ~~~~~~~~~~--~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~--~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 330 IAALYLIFLE--GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG--RFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred HHHHHHHHcc--ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc--ceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 7666666644 3445566678999999999999999999999999999 999999999999999999999887643
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=202.16 Aligned_cols=307 Identities=11% Similarity=0.054 Sum_probs=201.5
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H------------------HHHhh
Q 013324 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F------------------GWAAT 113 (445)
Q Consensus 53 ~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~------------------~~~~~ 113 (445)
|+++++++.|.+.+.+.+...+++++.|+++||+|||+.+.. +.+...++..+. + +.+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGI-GMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 458999999999999999999999999999999999997543 333333332221 1 11122
Q ss_pred hhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchh-hHHHHHHHHHHHHHHHHHHHHhc
Q 013324 114 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE-NQYRWIAYSSIFIGCCFVGIFLS 192 (445)
Q Consensus 114 ~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~ 192 (445)
......+++++.+ +++|+++.++...+..+|.++++.+.+.+.. . .+||+.|.+.++++++..++.+.
T Consensus 149 ~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 149 SPATHKIIVKWAP-PKERSRLLGMSTSGFQLGTFIFLPISGWLCE----------SWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred hhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccCCCCeehhhhhHHHHHHHHHHHH
Confidence 2333455666664 7889999999998888888888877766542 3 38999998888877776665555
Q ss_pred cccccccccccc-------------C---CcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 013324 193 RTEEPRLKMGLR-------------G---NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 256 (445)
Q Consensus 193 ~~~e~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (445)
..+|+++++++. + +.+.+.++++++++++++...+..++.....+...+|+|.|+++..|.+..
T Consensus 218 ~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~ 297 (465)
T TIGR00894 218 FPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGK 297 (465)
T ss_pred HhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence 444432111000 0 011123478899999999888888888888888889999999998999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHhhhhh--h-H---HHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhH
Q 013324 257 AKALVPAIIYICSFIVSILLQEM-AWTGQRL--K-A---YYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVGIANAL 328 (445)
Q Consensus 257 ~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~--~-~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~ 328 (445)
+.+.......++.+++.++.+++ +|..+|. + + .+..+..........+.... ..+.+..++...+.+.+.+.
T Consensus 298 ~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (465)
T TIGR00894 298 ENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSG 377 (465)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhh
Confidence 88888777788888888888875 4444332 1 1 11111111111111111111 12333334444444555444
Q ss_pred hhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 329 MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..+.......+..| +..| ...++.++...+|+.++|.+.+.+.
T Consensus 378 ~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~l~~~i~p~l~g~~~ 420 (465)
T TIGR00894 378 PLAGVLINSLDLAP-RFLG--FIKGITGLPGFIGGLIASTLAGNIL 420 (465)
T ss_pred hhhhhhhchhhcCh-hHHH--HHHHHHHHHHHHHHHHHHHhhheee
Confidence 44444444444444 4677 9999999999999999999988765
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-21 Score=187.95 Aligned_cols=326 Identities=12% Similarity=-0.018 Sum_probs=196.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHHHhhhhhhhh-hhhccCCchHHHHHHHHHHHH-HHH
Q 013324 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAV--MLSGQIADGFATIFIGE-LIDRFGHFKIWHGAGSVLVAV-SFS 105 (445)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l--~~~~~i~~~i~~p~~G~-l~Dr~Grrr~~ll~~~i~~~~-~~~ 105 (445)
...-+...+..+...+++|.+++|.|.|++++|.+ .+...+...+.+|++++ .+||+||||.|++...+.... ...
T Consensus 7 ~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~ 86 (390)
T TIGR02718 7 GLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLAS 86 (390)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHH
Confidence 33446677888999999999999999999999997 46778888899999955 799999999986554332221 111
Q ss_pred HH-H-------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013324 106 SV-F-------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 165 (445)
Q Consensus 106 ~~-~-------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 165 (445)
.. + ..+...+...++..+.. ++++++...+.+..+..+|.++++...+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~-~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~-------- 157 (390)
T TIGR02718 87 LALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHF-NGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF-------- 157 (390)
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 11 0 00111111122222222 2444556666676766777777765555554
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 166 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 245 (445)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (445)
+..+||..|.+.+++.++..+...+..+|+++ ++ +++++...++++++|+|.++......++..........+.++
T Consensus 158 --~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 233 (390)
T TIGR02718 158 --GKFGQRPAFLLVACVPLASLVCVLWLKDRAVA-SP-EAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKL 233 (390)
T ss_pred --HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC-cc-ccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35689999988887776665554443333221 11 111223445678899998877777667777767777788899
Q ss_pred HHHhhhcccchhhhHHHHHHHH-HHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhcc----CchhHHHHHH
Q 013324 246 YVINDLRMGQSAKALVPAIIYI-CSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP----MNMSAFMYVL 318 (445)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~~~~~-~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 318 (445)
|+++ .|+++++.+........ ..+++..+.++ +.||+ |+....+..+.....+...... ....+..+..
T Consensus 234 ~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~---l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 234 YLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAW---LVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 9887 69999888877665543 44556666664 34443 4555544444322222211111 1222333333
Q ss_pred HHHHHHHHhHhhhhHhhhccccccc-ccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 319 AIFVGIANALMMVTGISMQNVLVGE-DLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..+.++..+...+.......+..++ +.+| ..++..+....+|..+++.+.+.+.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAG--TDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666655555554444444 6667 6666666666666666666655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-21 Score=187.02 Aligned_cols=336 Identities=11% Similarity=-0.031 Sum_probs=214.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH
Q 013324 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (445)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~ 107 (445)
......+...+..+...+.+|.+.+++|+|+++.|++.+.+.+...++.|+.|++.||+||||..+ .+...++++....
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~-~g~~l~~~g~~l~ 85 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGIL-LGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHH
Confidence 344445555666777778889888888999999999999999999999999999999999999744 4444444433221
Q ss_pred H--------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc--
Q 013324 108 F--------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH-- 165 (445)
Q Consensus 108 ~--------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-- 165 (445)
. +.+....+.+..+.+..+ +++|++..+..+.+..+|..+++.+...+.........
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGP-ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 0 233444445555556554 56788888888888899999998888777532110000
Q ss_pred --------------cchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHH
Q 013324 166 --------------ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 231 (445)
Q Consensus 166 --------------~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (445)
..+..+||+.+.+.+++.++..++.. ..|+|+.+++++++.+.++..++++|+|+++...+..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~ 243 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFF 243 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccccchhhHHHHHhChhHHHHHHHHHH
Confidence 00235799999888777666554432 233332221112222333455688999998877666666
Q ss_pred HHHHHHHHHHHHHHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccC
Q 013324 232 TRLVVNVSQAYLAFYVINDL-RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM 309 (445)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 309 (445)
+........+|++.|.++.. +.+....+...........+|+++.+++ +|..+ |+.+.+...+..+..++..+.+
T Consensus 244 yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~--~~~l~i~~~~~~~~~ll~~~~~- 320 (410)
T TIGR00885 244 YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAA--HKVLMAYAIIGMALCLGSIFAG- 320 (410)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHcC-
Confidence 66666677889999987532 3333333333333334556777777654 34433 5555555555555555554433
Q ss_pred chhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 310 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
+. .......+.|++.+..+|.......+..+++.+. ...++ .+ ..+|+++.|.+.+.+.+
T Consensus 321 -~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~--~s~~l-~~-~~~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 321 -GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY--GAAGL-VM-AIIGGGIVPPLQGFIID 380 (410)
T ss_pred -Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hHHHH-HH-HHhccchHHHHHHHHHH
Confidence 22 2245566778888888888888887777766643 12222 12 23888888888887765
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-21 Score=192.41 Aligned_cols=337 Identities=12% Similarity=0.058 Sum_probs=211.7
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVA 101 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~ll~~~i~~~ 101 (445)
|..+......+.....++.+.++++.|+++. |.+.++.+++.+.+.....+..++.|+++|| +||||.++. +.+.+.
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~-g~~~~~ 92 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL-GAIVLA 92 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH-HHHHHH
Confidence 4455555666778888899999999999875 9999999999999999999999999999999 999998554 444444
Q ss_pred HHHHHHH------------------HHHhhhhhHhhhhhhcccCcc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013324 102 VSFSSVF------------------GWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 162 (445)
Q Consensus 102 ~~~~~~~------------------~~~~~~~~~~al~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 162 (445)
++...++ +.+.......+++.+..++++ +|.+..++.+.+.++|..+++.+++.+.+
T Consensus 93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~---- 168 (489)
T PRK10207 93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD---- 168 (489)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4433322 111222334567777776444 45777888888899999998888887753
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcccc----ccccccccc--CCcch----------------------H----
Q 013324 163 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE----EPRLKMGLR--GNSHA----------------------R---- 210 (445)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~----e~~~~~~~~--~~~~~----------------------~---- 210 (445)
..|||+.|.+.++ +++..++.+...+ +.+.+++++ +.... .
T Consensus 169 ------~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (489)
T PRK10207 169 ------KFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLV 241 (489)
T ss_pred ------hhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4589999877543 3333222222222 111011000 00000 0
Q ss_pred ----------------HHHHHHHhchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcccch----hhhHHHHHHHHH
Q 013324 211 ----------------ISWAYWFKKILYYQVAL--VYMLTRLVVNVSQAYLAFYVINDLRMGQS----AKALVPAIIYIC 268 (445)
Q Consensus 211 ----------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~ 268 (445)
....+.+|+|.+....+ ...+.+..+......++.|.++..+.+.. ..+.+.....+.
T Consensus 242 ~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ 321 (489)
T PRK10207 242 LIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFW 321 (489)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHH
Confidence 00012334444333222 23445555555656777777643222110 112333344445
Q ss_pred HHHHHHHHHHH-HHhhhhhh-----HHHHHHHHHHHHHHHHH-----hhcc---CchhHHHHHHHHHHHHHHhHhhhhHh
Q 013324 269 SFIVSILLQEM-AWTGQRLK-----AYYSAGGVLWVFCGAGI-----LILP---MNMSAFMYVLAIFVGIANALMMVTGI 334 (445)
Q Consensus 269 ~~ig~~l~~~~-~~~~~r~~-----~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (445)
.++.+++.+++ +|+.+|.+ ..+.+|+++.+++++.. .... ..+.|+.+...++.|+|.+...+...
T Consensus 322 iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~ 401 (489)
T PRK10207 322 VVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGL 401 (489)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55666666643 44444321 13556666666665432 1211 23466677788899999999999999
Q ss_pred hhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 335 SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 335 ~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+.....|++.+| ...|++++.+.+|+.+|+.+.....
T Consensus 402 ~~~~~~aP~~~~g--~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 402 AMIAALVPQHLMG--FILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHhChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999999999988876553
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-21 Score=187.78 Aligned_cols=318 Identities=9% Similarity=0.018 Sum_probs=190.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-
Q 013324 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF- 108 (445)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~- 108 (445)
.-.+.....+.++.++++.+++|. |+|.+++|++.+++.+...+++|++|+++||+||||..+..+.+...+......
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 334455677888889999999885 999999999999999999999999999999998766545444444433322211
Q ss_pred ------------HHHhhhhhHh----hhh----h----hcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 109 ------------GWAATQVAHM----SMV----N----CITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 109 ------------~~~~~~~~~~----al~----~----~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
..+....|.. ++. . |.. ++..|.+..+ .+|.++++.+++.+.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~-~~~~~~r~~G------~lG~~ig~~l~g~l~------- 154 (418)
T TIGR00889 89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVV-TDFPPIRVMG------TIGFIAAMWAVSLLD------- 154 (418)
T ss_pred hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCch-hcCCCeeeeh------hHHHHHHHHHHHHhc-------
Confidence 1111111111 111 1 112 1223444333 245556555555441
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcch----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHA----RISWAYWFKKILYYQVALVYMLTRLVVNVSQ 240 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (445)
...+|++ +.+.+++.++..++. +..||++++++++ +.+. +.+.++++|+|+++.+.+..++.........
T Consensus 155 ---~~~~~~~-f~~~~~~~~~~~~~~-~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 228 (418)
T TIGR00889 155 ---IELSNIQ-LYITAGSSALLGVFA-LTLPDIPVAKSTA-KMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITN 228 (418)
T ss_pred ---ccchhHH-HHHHHHHHHHHHHHH-hcCCCCCCCcccc-ccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHH
Confidence 1223443 334444444444433 4456643222111 1111 1234568899988777666666555555566
Q ss_pred HHHHHHHHhhhcccc--------hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCc
Q 013324 241 AYLAFYVINDLRMGQ--------SAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMN 310 (445)
Q Consensus 241 ~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~ 310 (445)
.+.+.|.++. |.++ ...+.......+..+++.+..++ +.||+ |+.+..+.++..++...+.....+
T Consensus 229 ~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~---l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~ 304 (418)
T TIGR00889 229 IFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPF---FLKRFGIKKVMLLSLVAWALRFGFFAYGDPE 304 (418)
T ss_pred HhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 7778887653 4332 34456666666667777777664 44444 667777777776665555442211
Q ss_pred --hhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHH-HHHHHHHHHHHHHHHHcc
Q 013324 311 --MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS-FLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 311 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~ig~~i~~~l~~~~~ 374 (445)
..+..++..++.|++.+...+....+..+..|++++| ...|+.+ ....+|..+|+.+.+.+.
T Consensus 305 ~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g--~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 305 YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA--SAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2344556677888888887777778888888999988 7777775 455667777766666544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-20 Score=183.24 Aligned_cols=327 Identities=9% Similarity=-0.025 Sum_probs=192.9
Q ss_pred hHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-----
Q 013324 34 MLNDITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV----- 107 (445)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~----- 107 (445)
+.....+.++.+..+.+.+ |+|+|+++.+++.++..+..++.+++.|++.||+|.||+..+...+.........
T Consensus 44 ~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~ 123 (462)
T PRK15034 44 LLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN 123 (462)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3334445555555555555 5699999999999999999999999999999999999975443333221111111
Q ss_pred -------H-------HH-HhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHH-----hhccccc--
Q 013324 108 -------F-------GW-AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-----VSTAKTH-- 165 (445)
Q Consensus 108 -------~-------~~-~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~~~~~-- 165 (445)
+ +. +....+....+..+.+ ++||+++.++.....++|..++..+.+++.. .++....
T Consensus 124 ~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp-~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~ 202 (462)
T PRK15034 124 PNTPFGIFIVIALLCGFAGANFASSMGNISFFFP-KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQ 202 (462)
T ss_pred cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCC-HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 0 11 1222333444556554 7889999999877777788777777666542 2211110
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 166 -ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 244 (445)
Q Consensus 166 -~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
.....+||....+..++.++..++.++..+|++. ++.+ .++.++.+|||+.|.+.+.+++....+.++..++|
T Consensus 203 ~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~~-~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp 276 (462)
T PRK15034 203 ADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----SRAS-IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFA 276 (462)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----cccC-HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0124568888777777666666666555444221 1112 34557789999999999999888888888888999
Q ss_pred HHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHH-HhhccC---chhHHHHHH
Q 013324 245 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAG-ILILPM---NMSAFMYVL 318 (445)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~ 318 (445)
.|.++... ............+...+..++.| ++.||+ ++.+.++.+.+.+.... ....+. .+.+...+.
T Consensus 277 ~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG---~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~ 351 (462)
T PRK15034 277 MLAKTQFP--DVNILRLAFFGPFIGAIARSVGG---AISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAV 351 (462)
T ss_pred HHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhH---HHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99887542 22111111222334445555666 455555 56666666555444332 222221 234443433
Q ss_pred HHHHHHHHhHhhhhHhhhccccccc---------------------ccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 319 AIFVGIANALMMVTGISMQNVLVGE---------------------DLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~~~~---------------------~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+...++.|..+.....++...+|+ ++.| .+.|+.+....+|+.+-|.+++...
T Consensus 352 ~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g--~v~G~v~a~G~~Ggf~~p~~~g~~~ 426 (462)
T PRK15034 352 FMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETA--AALGFISAIGAVGGFFIPQAFGMSL 426 (462)
T ss_pred HHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHH--HHHHHHHHHHHcccchhhHHHHHHH
Confidence 3333333333333333333333331 1334 7788878888787777777766654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-21 Score=197.11 Aligned_cols=340 Identities=14% Similarity=0.023 Sum_probs=212.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~ 106 (445)
+..+++.+........+...+|....++|+++.+.|++.+++.+...++.+++|+++||+|||+.+++...+..+.+...
T Consensus 170 ~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~ 249 (742)
T TIGR01299 170 FVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFS 249 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556667777778889999999999999999999999999999999999998655433322222222
Q ss_pred HH----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccc---cccc
Q 013324 107 VF----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK---THAD 167 (445)
Q Consensus 107 ~~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~ 167 (445)
.+ +.+.......+++.+..+ +++|++..++...+..+|.++++.++..+....++. +...
T Consensus 250 afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p-~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~ 328 (742)
T TIGR01299 250 SFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLA-QEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328 (742)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccc
Confidence 21 222333344566677765 678999999888888888888887776665432210 0001
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccccccc-----c-c-----------ccCC-----c------------------
Q 013324 168 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK-----M-G-----------LRGN-----S------------------ 207 (445)
Q Consensus 168 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~-----~-~-----------~~~~-----~------------------ 207 (445)
...+||+.+.+.++.+++.. +..+..||.+.. + + .+.+ .
T Consensus 329 ~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (742)
T TIGR01299 329 QFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELI 407 (742)
T ss_pred ccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhh
Confidence 23579998877666555444 334455664210 0 0 0000 0
Q ss_pred ----c------------------hHHHHHHHHhchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h---------
Q 013324 208 ----H------------------ARISWAYWFKKIL---YYQVALVYMLTRLVVNVSQAYLAFYVIND--L--------- 251 (445)
Q Consensus 208 ----~------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------- 251 (445)
+ .+.+++++++.+. .+.+.+..++..+.++++..|+|..+++. .
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~ 487 (742)
T TIGR01299 408 EIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNF 487 (742)
T ss_pred cccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 0 0002233333322 23344555666678888999999875431 0
Q ss_pred ------------------------------cc-----c------------------------------------------
Q 013324 252 ------------------------------RM-----G------------------------------------------ 254 (445)
Q Consensus 252 ------------------------------g~-----~------------------------------------------ 254 (445)
|+ +
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 567 (742)
T TIGR01299 488 PGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFI 567 (742)
T ss_pred cccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhh
Confidence 00 0
Q ss_pred ----------------------c----hhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 013324 255 ----------------------Q----SAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL 307 (445)
Q Consensus 255 ----------------------~----~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 307 (445)
. ........+..++.+++.++.+++ +|+++ |+.+.++.++.+++++++.+.
T Consensus 568 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GR--r~~l~~~~~lsai~~ll~~~~ 645 (742)
T TIGR01299 568 DSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGR--LRMLAGSMVLSCISCFFLSFG 645 (742)
T ss_pred hhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 0 001122334456677777777763 44444 666777777777776665554
Q ss_pred cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 308 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 308 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+ +.+..++..++.++..+...+....+..+..|.+.|| .++|+.+....+|..+++.+.+.+.
T Consensus 646 ~--s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rg--ta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 646 N--SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRA--TAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344445555677777777777888888899999998 8899999999999999998877654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=189.55 Aligned_cols=329 Identities=13% Similarity=0.038 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHH-----HHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-
Q 013324 37 DITAACWFTYLLLFLTDI--GLSPRGAAAVMLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF- 108 (445)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~--g~s~~~~g~l~~~-----~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~- 108 (445)
..+...+....+....+. +.++++.+.+.+. ..+...+++|+.|+++||+||||++++ +.+...++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~-~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 6 WFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVI-TLLMMGIGTLLIGL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHH-HHHHHHHHHHHHhh
Confidence 344444443333334443 3556777766554 334445688999999999999998554 4444443332221
Q ss_pred ------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 109 ------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 109 ------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
+.+....+...++.+..+ +++|++..+....+..+|.++++.+...+........
T Consensus 85 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~ 163 (394)
T TIGR00883 85 LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP-PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA 163 (394)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 001112223345566654 7789999999988888888888877665543221100
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc-cccCCcchHHHHHHHHhchH--HHHHHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-GLRGNSHARISWAYWFKKIL--YYQVALVYMLTRLVVNVSQA 241 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 241 (445)
....+||+.+.+.+++.++..... ...+|++..+ +++++++.+++.++.+++++ ++......++..........
T Consensus 164 --~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T TIGR00883 164 --LLEWGWRIPFLVSAVLVLIGLYLR-RNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITT 240 (394)
T ss_pred --hhccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 024689999877666555544332 3344433211 11111222334566677665 55555555566666667788
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHH-HHHHHH-hhccCchhHHHHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV-FCGAGI-LILPMNMSAFMYVL 318 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 318 (445)
+.|.|++++.|.++.+.+.......++..++.++.+++ +|+.+ |+.+.....+.. .+.... .....++.+.....
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGR--RPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL 318 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999988888888877777777777788888877754 33332 443333332222 221222 22222345555566
Q ss_pred HHHHHHHHhHhhhhHhhhcccccccccccchhHHhH-HHHHHHHHHHHHHHHHHHcc
Q 013324 319 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ig~~i~~~l~~~~~ 374 (445)
..+.+++.+...+....+..+.+|+++++ .+.++ +++...+|..+++.+.+.+.
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~g~~~~p~~~g~l~ 373 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGSFLPELFPTEVRY--TGASLAYNLAGAIFGGFAPYIAAALV 373 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCcccee--eEeeehhHhHHHHHhhHHHHHHHHHH
Confidence 67778888888888888888888988888 44554 44555667667776666554
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-20 Score=177.44 Aligned_cols=335 Identities=12% Similarity=0.097 Sum_probs=208.2
Q ss_pred CchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
.+++..+.++...+...+.++...++.+.+++|. |+|++++|.+.++..+...+.+|+.|.++||.|.||..+....+.
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l 83 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL 83 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence 4556778889999999999999999999999985 999999999999999999999999999999999777644332222
Q ss_pred H-HHHHHHHH---------HH--Hhh-----hhhHhhhhh--hcccC---ccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 013324 100 V-AVSFSSVF---------GW--AAT-----QVAHMSMVN--CITLN---STSRVVLTSCRNAFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 100 ~-~~~~~~~~---------~~--~~~-----~~~~~al~~--~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 157 (445)
. ..+....+ .+ ... +..+.+.++ |-..+ .++.-...-.| .++.+|.++++.+++.++
T Consensus 84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R-~wGSig~ai~s~~~G~L~ 162 (412)
T PF01306_consen 84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRAR-MWGSIGFAIASLLAGILF 162 (412)
T ss_dssp HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHH-HHhhHHHHHHHHHhheee
Confidence 1 11222211 00 000 111111111 11100 11111223333 445577777888888886
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc---ccc---CCcchHHHHHHHHhchHHHHHHHHHHH
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLR---GNSHARISWAYWFKKILYYQVALVYML 231 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (445)
+. +-+..+++....+++..++..+..+|++.+. +.+ +++...++..+++|+|++|.+.+....
T Consensus 163 ~i-----------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g 231 (412)
T PF01306_consen 163 NI-----------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIG 231 (412)
T ss_dssp HH-----------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHH
T ss_pred ee-----------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHH
Confidence 53 2234444444444544444444333322111 111 111122345788999999998887777
Q ss_pred HHHHHHHHHHHHHHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhh
Q 013324 232 TRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILI 306 (445)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~ 306 (445)
....+......++.|..... +.+....|......-+...+...+.+ ++.+|+ |+.++++..++.+-.....+
T Consensus 232 ~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p---~li~rig~k~~Lllag~i~~iRi~~~~~ 308 (412)
T PF01306_consen 232 VAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSP---WLINRIGAKNLLLLAGVIMAIRIIGSGF 308 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHH---HHHHhcChHhHHHHHHHHHHHHHHHHhh
Confidence 76677777777888877543 33444455555544444444444545 555555 78888888888888777766
Q ss_pred ccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHH-HHHHHHHHHHHHHHHHHcc
Q 013324 307 LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTL-SFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 307 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ig~~i~~~l~~~~~ 374 (445)
.+ ++|.+.+...++++..+.......-+..+..|+|..+ +.+.+. ++..++|..+.+.+.|...
T Consensus 309 ~~--~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsA--t~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 309 AT--NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSA--TLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred hc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 44 7788889999999999999888889999888888876 666663 5677777777776666654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-20 Score=180.87 Aligned_cols=333 Identities=12% Similarity=0.074 Sum_probs=198.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-
Q 013324 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF- 108 (445)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~- 108 (445)
+.-.+.....++...++++.|+++.|.|+.++|.+.++..+...+.+|++|.++||++++|..+....+..++......
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555677788889999999999999999999999999999999999999999998655544443333333322211
Q ss_pred ------------HHHhhhhhHhhhhhhccc--CccccchhhhHHHHHHHHHHHHHHHH-HHHHHHhhccccccchhhHHH
Q 013324 109 ------------GWAATQVAHMSMVNCITL--NSTSRVVLTSCRNAFTMVANLSLYAI-AFIVFSVSTAKTHADLENQYR 173 (445)
Q Consensus 109 ------------~~~~~~~~~~al~~~~~~--~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~~~g~~ 173 (445)
.+.....|..++...++- -++++.+....|.. ..+|.+++... ...+.+..+ ..+..
T Consensus 88 ~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlw-GSiGf~~~~~~~~~~~~~~~~-------~~~~~ 159 (400)
T PF03825_consen 88 SSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLW-GSIGFIVAALAFGGLLGGYLG-------ISGTS 159 (400)
T ss_pred hccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhh-hhHHHHHHHHHHHHHHHhhhc-------ccccc
Confidence 233333443333322221 12334455555533 34555554333 122222110 11222
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc-ccc-cccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013324 174 WIAYSSIFIGCCFVGIFLSRTEEPR-LKM-GLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL 251 (445)
Q Consensus 174 ~~~~~~~~~~~i~~~~~~~~~~e~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (445)
+.+.+.+...++....... .|+.+ +++ +++.++....+..+++|||++....+..++..........|.+.|+++..
T Consensus 160 ~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g 238 (400)
T PF03825_consen 160 LIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELG 238 (400)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2333333333333322222 33322 111 11112222334467899999988888888888888889999999999875
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHH---HHHHHHHHHHHH
Q 013324 252 RMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAF---MYVLAIFVGIAN 326 (445)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~g~~~ 326 (445)
|.+....+....+..++.++.-...+ |+.+|+ |+.+.++.+..++-..++....++.++. ..+..+++|+..
T Consensus 239 g~~~~~~g~~~~l~~~aEi~~f~~~~---~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf 315 (400)
T PF03825_consen 239 GYSGSTIGILWALGVVAEIPFFFFSG---RFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTF 315 (400)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHH
Confidence 56666555544444444554444444 555555 7888888888888877777653222221 122345799999
Q ss_pred hHhhhhHhhhccccccccccc--chhHHhH-HHHHHHHHHHHHHHHHHHcc
Q 013324 327 ALMMVTGISMQNVLVGEDLSG--CAFVCGT-LSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~g--~~~~~~~-~~~~~~ig~~i~~~l~~~~~ 374 (445)
+........+..+..|++.++ ++...++ +.++..+|+.++|.+.+.++
T Consensus 316 ~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 316 GLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 999999999999988888876 3333332 23444455555555555554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-21 Score=212.39 Aligned_cols=300 Identities=12% Similarity=-0.030 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHH--HHHHHHHHHHHHHH-----------------HHHhhhhhHh
Q 013324 58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG--AGSVLVAVSFSSVF-----------------GWAATQVAHM 118 (445)
Q Consensus 58 ~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll--~~~i~~~~~~~~~~-----------------~~~~~~~~~~ 118 (445)
....++..+++.+...+.+|+.|+++||+||||++.. ...+.........+ +.+.......
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 3567888999999999999999999999999986422 11111111111110 2223444556
Q ss_pred hhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 013324 119 SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 198 (445)
Q Consensus 119 al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 198 (445)
++++++.+ +++|++++++.+.+..+|.++++.+++.+.. ..+|++.+....++.++..++ .+.+++++
T Consensus 131 a~l~~~~~-~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 198 (1140)
T PRK06814 131 SILPDHLN-KDELLGANALVEAGTFIAILLGTIIGGLATI----------SGNFVILVALLMGIAVLGWLA-SLFIPKTG 198 (1140)
T ss_pred HhhHhhcC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------ccccHHHHHHHHHHHHHHHHH-HhhCCCCC
Confidence 77788886 6889999999999999999999999988864 357888874443444443333 33444432
Q ss_pred ccccc-cCC----cchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHH
Q 013324 199 LKMGL-RGN----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS 273 (445)
Q Consensus 199 ~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~ 273 (445)
.++++ +.+ ++....++.+.++|.++...+..++.+........++|.|+++.+|.++...+.+.....++.++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~ 278 (1140)
T PRK06814 199 NAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGS 278 (1140)
T ss_pred CCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 22111 111 1233567788899999888877777777777788899999999899999888988888889999999
Q ss_pred HHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhc------------------cCchhHHHHHHHHHHHHHHhHhhhhH
Q 013324 274 ILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILIL------------------PMNMSAFMYVLAIFVGIANALMMVTG 333 (445)
Q Consensus 274 ~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (445)
++.+++ .++. ++.+..+.++..+..+.+.+. ...+.|.+.+..++.|++.+...+..
T Consensus 279 ~~~g~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (1140)
T PRK06814 279 FLASKL---SEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPL 355 (1140)
T ss_pred HHHHHH---hCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHH
Confidence 888854 4332 333333333333322222221 11355666677778899999888888
Q ss_pred hhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 334 ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 334 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.++.++.+|++.+| .++|+.++...+|..+++.+.+.+.
T Consensus 356 ~~~~~~~~p~~~~G--~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 356 FAALQAWANPAHRA--RVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHhhCCcccce--eeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 8888999999999988888777664
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-21 Score=191.38 Aligned_cols=341 Identities=12% Similarity=0.022 Sum_probs=200.5
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI--------GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG 94 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll 94 (445)
.+-.+...++.+....+...+.+..+.+-+++ |.++++.|++.+++.+...++++++|+++||+||||++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~ 90 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34445566777777777777777777666655 8899999999999999999999999999999999998665
Q ss_pred HHHHHHHHHHHH-H---------------------H-------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHH
Q 013324 95 AGSVLVAVSFSS-V---------------------F-------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 145 (445)
Q Consensus 95 ~~~i~~~~~~~~-~---------------------~-------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g 145 (445)
...+ +.++... . . +.+....+..+++.|+.+ +++|+++.++...+..+|
T Consensus 91 ~~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 91 AAVL-FFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP-AHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHH-HHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC-hhhhhHHHHHHHHHHHHH
Confidence 4333 3222111 0 0 222334445667788876 678999999998888888
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc----cccC----------CcchH-
Q 013324 146 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM----GLRG----------NSHAR- 210 (445)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~----~~~~----------~~~~~- 210 (445)
.++++.++..+....... .....+||+.+.+.++..++..+.. +..||+++.. ++++ ..+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~--~~~~~gWr~~f~~~~~~~~~~~~~~-~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
T PRK10077 169 QLVVYFVNYFIARSGDAS--WLNTDGWRYMFASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ 245 (479)
T ss_pred HHHHHHHHHHHhccCccc--ccccCChHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHH
Confidence 888776655443211000 0024689999987766666655443 4466643210 0000 00001
Q ss_pred --HHHHHHHhc-----hHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHH
Q 013324 211 --ISWAYWFKK-----ILYYQVALVYML--------T-RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSI 274 (445)
Q Consensus 211 --~~~~~~~~~-----~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~ 274 (445)
++.++..++ +.++........ . .........+.|.+. +..|.+...........++..+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~ 324 (479)
T PRK10077 246 ALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTV 324 (479)
T ss_pred HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHH
Confidence 111222211 111111000000 0 011122233445544 45677766555555556677777887
Q ss_pred HHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc-Cch-hHHHHHHHHHHHHHHhHh-hhhHhhhcccccccccccchh
Q 013324 275 LLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNM-SAFMYVLAIFVGIANALM-MVTGISMQNVLVGEDLSGCAF 350 (445)
Q Consensus 275 l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 350 (445)
+.+++ +|+++ |+.+..+..+.+++.+.+.... .+. .+......++.+++.+.. .+....+..+..|++++| .
T Consensus 325 ~~g~l~dr~g~--r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~ 400 (479)
T PRK10077 325 LAIMTVDKFGR--KPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--K 400 (479)
T ss_pred HHHHHHHHhcC--hHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH--H
Confidence 77753 33332 6666777776666655543321 111 122233344445555432 255667788888989999 8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHc
Q 013324 351 VCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 351 ~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
+.|+.+....+|..+++.+....
T Consensus 401 ~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 401 ALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 88888888888888887665443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-21 Score=210.98 Aligned_cols=343 Identities=15% Similarity=0.012 Sum_probs=222.0
Q ss_pred CCchhHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHhCCC--HHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHH
Q 013324 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFL-TDIGLS--PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG 96 (445)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s--~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~ 96 (445)
.++.+....+.+..+...+........+..++ .+++.+ ....+++.+++.+...+++|++|+++||+||||+++...
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~ 84 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK 84 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence 34556666667777777666665555554444 344544 456899999999999999999999999999999865432
Q ss_pred HHHHHHHHH--HH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 013324 97 SVLVAVSFS--SV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 97 ~i~~~~~~~--~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 157 (445)
.+....... .+ + +.+....+..+++.++.+ +++|+++.++...+..+|.++++.+++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVG-KENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcC-cccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 221111111 11 0 222333445567788876 688999999999999999999999888876
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccc---c----CCcchHHHHHHHHhchHHHHHHHHHH
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---R----GNSHARISWAYWFKKILYYQVALVYM 230 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (445)
......+ .+...+|++.+.+..+...+..++..+..+|.+....+ + ......+.++.++++|.++...+...
T Consensus 164 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (1146)
T PRK08633 164 ESVNGNT-PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLS 242 (1146)
T ss_pred Hhhcccc-ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5311000 00012344443333232222222223334543221111 1 11123456677888888887666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccch-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhc
Q 013324 231 LTRLVVNVSQAYLAFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILIL 307 (445)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~ 307 (445)
+.+........++|.|+++..|.+.. ..+++.....++.++++++.+ ++.||+ ++.+.++.++.+++.+.+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g---~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1146)
T PRK08633 243 YFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAG---RLSGRHIELGLVPLGALGLALSLFLLPTA 319 (1146)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH---HHhCCceEccchhHHHHHHHHHHHHHHHh
Confidence 66666666778899999998999888 788888888888888888877 445554 445555655555555444443
Q ss_pred cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 308 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 308 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
. +.+..++..++.|++.++..+...++..+..|++.+| .++|+.++...+|..+++.+..
T Consensus 320 ~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg--~~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 320 P--SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG--KVLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred h--hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh--hhhHHHHHHHHHHHHHHHHHHH
Confidence 3 5566667778888888888877888888888999999 8888888888888766654443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-21 Score=184.83 Aligned_cols=311 Identities=12% Similarity=0.080 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------
Q 013324 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------------- 108 (445)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------------- 108 (445)
...+.+|.+.+|+|.|+++.|++.+++.+...++.++.|+++||+||||.+++ +.+....+.....
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAA-GLLLIAAGILIRSAPGTALLFAGTAL 96 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHH-HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34567888888899999999999999999999999999999999999998554 3333333322211
Q ss_pred ---HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHH
Q 013324 109 ---GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC 185 (445)
Q Consensus 109 ---~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 185 (445)
+.+.........+.+.. +++|+++.+....+..+|..+++.+.+++.+.. ..+||+.+...++..++
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~--------~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDF--PQRVGLMTGLYSMALMGGAALAAAATVPLAQHS--------GGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHhccchHHHHHhC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHH
Confidence 11111222223334443 457899999988888888888887777765421 23589887665554433
Q ss_pred HHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHH
Q 013324 186 FVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII 265 (445)
Q Consensus 186 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 265 (445)
..... .+|.+++++++ +++.+...++.+|||.++...+...+..........++|.|+++ .|.+..+.+......
T Consensus 167 ~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~ 241 (355)
T TIGR00896 167 ALLAW---IPQVRRRVAAN-QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALM 241 (355)
T ss_pred HHHHH---hhhhccccCCC-CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 33222 22221111111 11111234567888888776666555556666777899999986 588888888888888
Q ss_pred HHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccc-ccc
Q 013324 266 YICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL-VGE 343 (445)
Q Consensus 266 ~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~ 343 (445)
.++.++++++.+++ +|..+| |+.+..+..+.+++.+.+.+.+.+..+ ...++.|++.+...+......... .++
T Consensus 242 ~~~~i~~~~~~g~l~dr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~g~~~g~~~~~~~~~~~~~~~~~ 317 (355)
T TIGR00896 242 QLAQAASALLIPALARRVKDQ-RGIVAVLAVLQLVGLCGLLFAPMHGLW---AWALVLGLGQGGAFPLALTLIGLRSRQA 317 (355)
T ss_pred HHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHhhhhHhHHHHHHHHHhccCH
Confidence 88999999888865 333232 445556666666665555443322221 234677888888877655554433 334
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 344 DLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 344 ~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+++| ...++.+....++..+++.+.+.+.
T Consensus 318 ~~~g--~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 318 AQAA--ALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556 6667766666666677776666654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-20 Score=185.15 Aligned_cols=338 Identities=12% Similarity=0.023 Sum_probs=221.0
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTD---IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVL 99 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~ll~~~i~ 99 (445)
+..+......+.+.+.++.+.+++|.|+++ +|.++.+.|.+.+++.+...+++++.|+++|| +||||..+ .+.+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~-~~~~~ 88 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV-LGGIV 88 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH-HHHHH
Confidence 445566677888889889999999999986 69999999999999999999999999999999 89999754 44444
Q ss_pred HHHHHHHHH-----------------HHHhhhhhHhhhhhhcccCc--cccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013324 100 VAVSFSSVF-----------------GWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 160 (445)
Q Consensus 100 ~~~~~~~~~-----------------~~~~~~~~~~al~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 160 (445)
.+++..... +.+.......+++.+..+++ ++|++..++.+.+.++|.++++.+++.+.+
T Consensus 89 ~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~-- 166 (475)
T TIGR00924 89 LMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE-- 166 (475)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH--
Confidence 444433221 11122233456667776543 357888888888999999999888777642
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhcccc---cccccccc-cCCc-chHHH-----------------------
Q 013324 161 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE---EPRLKMGL-RGNS-HARIS----------------------- 212 (445)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~---e~~~~~~~-~~~~-~~~~~----------------------- 212 (445)
..+|++.|.+.++..++..+......+ +.+.++++ ++++ +....
T Consensus 167 --------~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
T TIGR00924 167 --------NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVI 238 (475)
T ss_pred --------hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 458999887766544433333222121 11111100 0000 00000
Q ss_pred ------------------------HHHHHhch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch----hhhHHH
Q 013324 213 ------------------------WAYWFKKI--LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS----AKALVP 262 (445)
Q Consensus 213 ------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~ 262 (445)
..+..|+| .+..+.+...+.+..+....+.++.+.++..+.+.. ..+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~ 318 (475)
T TIGR00924 239 ANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQ 318 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHH
Confidence 00011112 223334445556666666677778877765444321 145666
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhh---hH--HHHHHHHHHHHHHHHHhhc-------cCchhHHHHHHHHHHHHHHhHh
Q 013324 263 AIIYICSFIVSILLQE-MAWTGQRL---KA--YYSAGGVLWVFCGAGILIL-------PMNMSAFMYVLAIFVGIANALM 329 (445)
Q Consensus 263 ~~~~~~~~ig~~l~~~-~~~~~~r~---~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~g~~~~~~ 329 (445)
....+.-++..++..+ +.++.||. +. -+.+|.++.++++....+. ...+.|+.++..++.++|....
T Consensus 319 ~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~ 398 (475)
T TIGR00924 319 SLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMI 398 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 6666666666655443 34444431 11 2467777777776665431 1246777788889999999999
Q ss_pred hhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 330 MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.|...++..+..|++.+| .+.|++.+...+|..+++.+....-
T Consensus 399 ~p~~~~~~~~~aP~~~~g--~~~g~~~l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 399 SPLGLSWWTKIAPQRLMG--QMLGMWFLAQAMGSLLGGYLATFGA 441 (475)
T ss_pred hHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999999999999988876543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=192.79 Aligned_cols=327 Identities=13% Similarity=0.020 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 013324 34 MLNDITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (445)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s--------~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~ 105 (445)
+..........+.++....+.+.+ ..+.|++.+++.+...+++|+.|+++||+||||.+++... ...++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~ 116 (481)
T TIGR00879 38 LMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL-LFVIGAI 116 (481)
T ss_pred HhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHH-HHHHHHH
Confidence 334444555556666666665555 8999999999999999999999999999999987554333 3333322
Q ss_pred HH-H-------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013324 106 SV-F-------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 165 (445)
Q Consensus 106 ~~-~-------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 165 (445)
+. + +.+.......+++.+..+ +++|+++.++...+..+|..+++.++ ......
T Consensus 117 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~----- 189 (481)
T TIGR00879 117 LMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP-KALRGALTSLYQLAITFGILVAYGFG-SGKVSL----- 189 (481)
T ss_pred HHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCC-hhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcC-----
Confidence 22 1 222233344556677765 77899999998888888888877766 000111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccccccccc-----ccc------------cCCc-chHH----------------
Q 013324 166 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK-----MGL------------RGNS-HARI---------------- 211 (445)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~-----~~~------------~~~~-~~~~---------------- 211 (445)
....+||+.+.+.++..++..+. .+..+|++.. +.+ +++. ...+
T Consensus 190 -~~~~~w~~~f~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
T TIGR00879 190 -NNTLGWRIPLGLQLIPAGLLFLG-LFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSV 267 (481)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHH-HhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 13468999988755544444433 3344553210 000 0000 0000
Q ss_pred --HHHHHHhc-----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHh
Q 013324 212 --SWAYWFKK-----IL-YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT 282 (445)
Q Consensus 212 --~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~ 282 (445)
.+++.++. ++ ++...+..+...........+.|.+. ++.|.+....+.......++.+++.++.+++ +|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (481)
T TIGR00879 268 QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF 346 (481)
T ss_pred cccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00122221 11 11111122222222223344455544 4568888766777777777788888887764 333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhh---ccCch-----hHHHHHHHHHHHHHHhH-hhhhHhhhcccccccccccchhHHh
Q 013324 283 GQRLKAYYSAGGVLWVFCGAGILI---LPMNM-----SAFMYVLAIFVGIANAL-MMVTGISMQNVLVGEDLSGCAFVCG 353 (445)
Q Consensus 283 ~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~ 353 (445)
.+ |+.+..+.++..++.+.+.+ ...+. .+..+....+.+.+.+. ..+....+..+..|++++| ...+
T Consensus 347 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~ 422 (481)
T TIGR00879 347 GR--RPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP--KGIS 422 (481)
T ss_pred cc--hHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH--HHHH
Confidence 33 55555666655555444431 11111 22222223333333332 2344555667778888888 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHccc
Q 013324 354 TLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 354 ~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
+.+....+|+.+++.+.+.+..
T Consensus 423 ~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 423 IAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988888776543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=177.40 Aligned_cols=314 Identities=14% Similarity=0.067 Sum_probs=205.0
Q ss_pred HHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-----HH-------
Q 013324 44 FTYLLLFL-TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF-----GW------- 110 (445)
Q Consensus 44 ~~~l~~~~-~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~-----~~------- 110 (445)
.+.+.+++ .|+|+|++|.+++.++..+..++...+.|.+.||+|.||.+.+...+...-.....+ .+
T Consensus 33 ~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g 112 (417)
T COG2223 33 FSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG 112 (417)
T ss_pred HHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 34444444 445999999999999999999999999999999999999865544433333333322 00
Q ss_pred -----Hh-hhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Q 013324 111 -----AA-TQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 184 (445)
Q Consensus 111 -----~~-~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 184 (445)
+. ........++...+ +|+++.+.++.. ..++|..+..++++++....+ ...|+....+..+..+
T Consensus 113 ll~G~~GasFav~m~~~s~~fP-~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-------~~~w~~~~~i~~~~l~ 183 (417)
T COG2223 113 LLLGLAGASFAVGMPNASFFFP-KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-------FLAWRNVAGIYVVALA 183 (417)
T ss_pred HHHhcccceehcccccccccCC-hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHH
Confidence 00 00111123344444 788999999987 778898888888888775421 0138887776666666
Q ss_pred HHHHHHhcccccccccccccCCcchH-HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHH
Q 013324 185 CFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPA 263 (445)
Q Consensus 185 i~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (445)
+..+..++..+|.++.++ ..++.+ .+++.+++||+.|.+.+.+....-.+.++..++|.|++++.|.++..++....
T Consensus 184 v~~v~~~~~~~d~p~~r~--~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~ 261 (417)
T COG2223 184 IAAVLAWLGMNDVPEHRA--SVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAF 261 (417)
T ss_pred HHHHHHHHHhCCChhhhc--cccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 666666666666333111 111222 66788899999999999999998889999999999999999999988876655
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhcc-----CchhHHHHHHHHHHHHHHhHhhhhHhhh
Q 013324 264 IIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP-----MNMSAFMYVLAIFVGIANALMMVTGISM 336 (445)
Q Consensus 264 ~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (445)
...+.+.+..++.| +++||+ +|...+....++++........ ..+.+......+..++..|.-+..+..+
T Consensus 262 ~f~~~g~l~Rp~GG---~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~ 338 (417)
T COG2223 262 LFPLIGALARPLGG---WLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKM 338 (417)
T ss_pred HHHHHHHHHHhccc---hhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheee
Confidence 55444555555555 567776 5656666665555544444332 1234444444444444444444455556
Q ss_pred cccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 337 ~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+....++ +.| .+.|+.+....+|+..-|..++...
T Consensus 339 Ip~if~~-~~G--~v~G~vga~G~lGGf~lp~~~g~~~ 373 (417)
T COG2223 339 IPVIFPK-ETG--AVTGIVGAIGGLGGFFLPLAFGVSL 373 (417)
T ss_pred chHHHHh-hhh--HHHHHHHHhccccccchhHHHHHHH
Confidence 6655544 556 6778777777777666566655544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-18 Score=160.72 Aligned_cols=331 Identities=12% Similarity=0.049 Sum_probs=217.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-----
Q 013324 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----- 108 (445)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----- 108 (445)
+...+........+|.+.+-+++|..+++.+..++...+.+...+.|++.+|+|+|+- ++.+..+++++..+.+
T Consensus 23 fl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-i~lgL~l~avg~~lF~pAa~~ 101 (422)
T COG0738 23 FLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-IVLGLLLYAVGAALFWPAASS 101 (422)
T ss_pred HHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhhhhhh
Confidence 4444555555566777777779999999999999999999999999999999999998 5556666666655543
Q ss_pred ---------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc---------
Q 013324 109 ---------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT--------- 164 (445)
Q Consensus 109 ---------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--------- 164 (445)
+-+...+..+.++..+.+ +++..+-....+.+..+|.++++.++..++.+-....
T Consensus 102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~-~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~ 180 (422)
T COG0738 102 KSYGFFLVALFILASGIGLLETAANPYVTLLGK-PESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAI 180 (422)
T ss_pred hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC-chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence 222344455566666655 3334444556678888999999988887765210000
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARI-SWAYWFKKILYYQVALVYMLTRLVVNVSQAYL 243 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (445)
.......|++++...+.+.+++.+.. ...|-|+.++.++++.+.++ ...+++|||+++...+..+++.....+...|+
T Consensus 181 ~~~~~~~v~~pYl~~~~~lvll~v~~-~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl 259 (422)
T COG0738 181 KGADASSVQFPYLILAGLLVLLAVLI-LLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFL 259 (422)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH-HhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 00012347778777666655555444 23333333322222111111 56888999999988888888888888899999
Q ss_pred HHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 013324 244 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 322 (445)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (445)
+.|+.+..|.+..+.+...+....+.++|.++..+ ++|+.+ .|.+.+..+...+.++...+.+ +. ..+....+.
T Consensus 260 ~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~--~k~Laf~a~~~ill~~~~~l~~--g~-v~~~~l~~i 334 (422)
T COG0738 260 VSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP--EKYLAFYALIAILLLLAVALIG--GV-VALYALFLI 334 (422)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHhc--Ch-HHHHHHHHH
Confidence 99999988888888888888888888888876654 344433 4555444444444334444433 33 334556788
Q ss_pred HHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 323 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
|+..+..+|...+...+..| +++. ...++ -.+.-+|+++-|.+.+..-+.
T Consensus 335 g~F~simfPTIfslal~~l~-~~ts--~~s~~-l~maivGGAiiP~l~G~i~d~ 384 (422)
T COG0738 335 GLFNSIMFPTIFSLALKNLG-EHTS--VGSGL-LVMAIVGGAIIPPLQGVIADM 384 (422)
T ss_pred HHHhHHHHHHHHHHHHhccC-cccc--cccee-eeeheecchHHHHHHHHHHHh
Confidence 99999999998888777666 3333 12222 233446788888888887643
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-19 Score=175.94 Aligned_cols=333 Identities=12% Similarity=0.029 Sum_probs=201.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHHHHHHHH
Q 013324 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVS 103 (445)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~ll~~~i~~~~~ 103 (445)
.+......+......+.+..+++.|+++. |.++++.+++.+.+........++.|+++|| +||||.++.. .+...++
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g-~~~~~ig 101 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG-AIVLAIG 101 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHH
Confidence 44455666777788888888999999765 9999999999988887777777899999999 5999975543 3333333
Q ss_pred HHHH-H-----------------HHHhhhhhHhhhhhhcccCc-cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 104 FSSV-F-----------------GWAATQVAHMSMVNCITLNS-TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 104 ~~~~-~-----------------~~~~~~~~~~al~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
...+ + +.+.......+++.+..+++ ++|....++.+.+.++|..+++.+++.+.+
T Consensus 102 ~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~------ 175 (500)
T PRK09584 102 YALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA------ 175 (500)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH------
Confidence 2222 1 11112223345667776533 334556777778888899888888877753
Q ss_pred ccchhhHHHHHHHHHHHHHHHH---HHHHhcccccccccccc--cCCcchH-----------------------------
Q 013324 165 HADLENQYRWIAYSSIFIGCCF---VGIFLSRTEEPRLKMGL--RGNSHAR----------------------------- 210 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~---~~~~~~~~~e~~~~~~~--~~~~~~~----------------------------- 210 (445)
..|||+.|.+.++..++. .+......+|+..++++ .+..+..
T Consensus 176 ----~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (500)
T PRK09584 176 ----KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGV 251 (500)
T ss_pred ----hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 468999988766433332 22222333332111110 0100000
Q ss_pred -----------H--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhh-----cccchhhhHHHHHHHHH
Q 013324 211 -----------I--SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI----NDL-----RMGQSAKALVPAIIYIC 268 (445)
Q Consensus 211 -----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----g~~~~~~~~~~~~~~~~ 268 (445)
. ..++.-| ++.+.. +..++....+.......+.++. +.. |.. ...+++.....+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~ 328 (500)
T PRK09584 252 VALGIVVIFGKEAFAMKGAAR-RKMIVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFW 328 (500)
T ss_pred HHHHHHHHHHHHHhhcCHHHH-HHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHH
Confidence 0 0000111 121111 1111222223333333333322 211 111 1134555666666
Q ss_pred HHHHHHHHHH-HHHhhhhh--hHHHHHHHHHHHHHHHHHhhccC-------chhHHHHHHHHHHHHHHhHhhhhHhhhcc
Q 013324 269 SFIVSILLQE-MAWTGQRL--KAYYSAGGVLWVFCGAGILILPM-------NMSAFMYVLAIFVGIANALMMVTGISMQN 338 (445)
Q Consensus 269 ~~ig~~l~~~-~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 338 (445)
.++..++..+ ++|+.+|. .+.+.+++++.+++++.+..... -+.++.+...++.++|.....|...++..
T Consensus 329 iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~ 408 (500)
T PRK09584 329 IMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVA 408 (500)
T ss_pred HHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6666665544 35666664 45577888888888776654321 12456677888999999999999999999
Q ss_pred cccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 339 VLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 339 ~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+..|++.+| ...|.+.+...+|+.+++.+.+...
T Consensus 409 ~~aP~~~rg--~~~g~~~l~~a~g~~~~g~~~~~~~ 442 (500)
T PRK09584 409 QLVPQRLMG--FIMGSWFLTTAGAALIAGYVANLMA 442 (500)
T ss_pred HhCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 8999999888899999988887554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-19 Score=179.29 Aligned_cols=341 Identities=12% Similarity=0.035 Sum_probs=190.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
...+++.+........++..+|.+-.+. +.+..+.+++.+.+.+...+++++.|+++||+|||+.+++. .+...
T Consensus 19 ~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~-~~~~~ 97 (502)
T TIGR00887 19 VIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME-LIIMI 97 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HHHHH
Confidence 3455666666666667766667655432 35567789999999999999999999999999999875432 22222
Q ss_pred HHHHHH--------------H---------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013324 102 VSFSSV--------------F---------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 102 ~~~~~~--------------~---------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 158 (445)
++..+. + +.+....+...++.|..+ +++|++..++......+|.++++.++..+..
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~ 176 (502)
T TIGR00887 98 IATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFAT-KKWRGAMMAAVFAMQGFGILAGAIVALIVLA 176 (502)
T ss_pred HHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221110 0 222333445566677775 7889999999988888888888877765543
Q ss_pred hhccc--cc-----------cchhhHHHHHHHHHHHHHHHHHHHHhcccccccc-----ccc-c---------------c
Q 013324 159 VSTAK--TH-----------ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-----KMG-L---------------R 204 (445)
Q Consensus 159 ~~~~~--~~-----------~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~-----~~~-~---------------~ 204 (445)
..... .. ...+++||+.+.+.++.+++..++ .+.+||+++ .++ + +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~ 255 (502)
T TIGR00887 177 GFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEA 255 (502)
T ss_pred HhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHHhcccccc
Confidence 22100 00 001247999997665555544433 345677532 000 0 0
Q ss_pred CC----------cchHHHHHHHHhc---hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH-------
Q 013324 205 GN----------SHARISWAYWFKK---ILYYQVAL----VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL------- 260 (445)
Q Consensus 205 ~~----------~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------- 260 (445)
++ +..+.++++++++ |+.+...+ ..+......++...+.|.++++ .|++....+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~ 334 (502)
T TIGR00887 256 EPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELY 334 (502)
T ss_pred CcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHH
Confidence 00 0011246666653 22211111 1222233444556667888764 5775432110
Q ss_pred -----HHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc-C-chhHHHHHHHHHHHHHHhHhhhh
Q 013324 261 -----VPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-M-NMSAFMYVLAIFVGIANALMMVT 332 (445)
Q Consensus 261 -----~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~g~~~~~~~~~ 332 (445)
......++.+++.++.+++ +|++| |+.+..+.++..++...+.... . +.........+...++.....+.
T Consensus 335 ~~~~~~~~~~~~~~i~g~~~~~~l~dr~gR--R~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (502)
T TIGR00887 335 KTAVGNLIIALAGTVPGYWVTVFLVDIIGR--KPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNAT 412 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--hhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Confidence 1122233445555665543 44443 5555556655555444333221 1 11111111111111111122344
Q ss_pred HhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 333 GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 333 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
.+.+..+..|.+.|| ...++.+....+|+.+++.+.+.+.+
T Consensus 413 ~~~~~~E~~p~~~R~--~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 413 TFIVPGEVFPTRYRS--TAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred hhhhhhccCchhHHH--HHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 556667889999999 88889899999999999988877653
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=185.59 Aligned_cols=302 Identities=15% Similarity=0.123 Sum_probs=188.4
Q ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H-------------
Q 013324 46 YLLLFLTDIGLS---PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F------------- 108 (445)
Q Consensus 46 ~l~~~~~~~g~s---~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~------------- 108 (445)
+.+...+|.+++ +.+.|++.+++.+...++.++.|+++||+||||.+++ +.+...++.... +
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLL-STLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHH-HHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 445555667998 8999999999999999999999999999999998554 333333333222 2
Q ss_pred ---HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHH
Q 013324 109 ---GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC 185 (445)
Q Consensus 109 ---~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 185 (445)
+.+.......+++.|..+ +++|++..+....+..+|.++++.++..+ .+||+.+.+.++..++
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------------~~wr~~~~~~~i~~~~ 255 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLP-KKQRAIVGTLIQVFFSLGLVLLPLVAYFI-------------PDWRWLQLAVSLPTFL 255 (505)
T ss_pred HHhhccchHHHHHHHhheecC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHHH
Confidence 111223344556677765 67788888888777777777766554432 2499998888777666
Q ss_pred HHHHHhccccccccc-----c-cc-------------------------cC---CcchHHHHHHHHhchHHHHHHHHHHH
Q 013324 186 FVGIFLSRTEEPRLK-----M-GL-------------------------RG---NSHARISWAYWFKKILYYQVALVYML 231 (445)
Q Consensus 186 ~~~~~~~~~~e~~~~-----~-~~-------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (445)
..+.. +..||+++. + ++ ++ +++.+..+++++|+|+++...+...+
T Consensus 256 ~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (505)
T TIGR00898 256 FFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMM 334 (505)
T ss_pred HHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHH
Confidence 65554 445664210 0 00 00 00001245678888887766555444
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCc
Q 013324 232 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN 310 (445)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (445)
.+...... .+...+.....+.+.. ......++..+++.++.+++ +|+++ |+.+.++.++.+++++.+.+.+..
T Consensus 335 ~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~gr--r~~~~~~~~~~~~~~l~~~~~~~~ 408 (505)
T TIGR00898 335 LWFTTAFS-YYGLVLDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGR--RYTMAASLLLAGVALLLLLFVPVD 408 (505)
T ss_pred HHHHHHHH-HHHHhccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44333322 2222232333344432 22233345556666666653 33333 556666666666666655555433
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 311 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
..+......++.+++.+..++....+..+..|.+.++ ...|+.+....+|+.+++.+.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN--LGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh--hhHhHHHHHHHHHHHHHhHHHH
Confidence 3344444555666677767777778888889998888 7788889999999999998877
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-22 Score=173.98 Aligned_cols=337 Identities=46% Similarity=0.852 Sum_probs=243.1
Q ss_pred CCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh---------ccC
Q 013324 17 FTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID---------RFG 87 (445)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~D---------r~G 87 (445)
..|+...+.+++|+.||+.++++.+++.+|+..|+++.|+++....+++.++.+.+++..|+.|..+| |+|
T Consensus 10 stkPigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G 89 (412)
T KOG4830|consen 10 STKPIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG 89 (412)
T ss_pred CCCcccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc
Confidence 36678888999999999999999999999999999999999999999999999999999999996654 899
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 013324 88 HFKIWHGAGSVLVAVSFSSVFGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 167 (445)
Q Consensus 88 rrr~~ll~~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 167 (445)
||+.|-..+..+..++....++++.. .. - +....-+. ++|... +...++++.......+
T Consensus 90 ~~~~wh~~gt~lVslSf~~ifg~a~i-----------F~-~--~~~~s~va----nlglya---ialvVFgv~~A~~ke~ 148 (412)
T KOG4830|consen 90 RRMSWHLIGTVLVSLSFPMIFGFAKI-----------FL-C--KSTTSEVA----NLGLYA---IALVVFGVGWASVKES 148 (412)
T ss_pred ceeeeeecccEEEEEechhhcCceeE-----------Ee-e--ccHHHHHH----HhHHHH---HHhheeeeeeeccccc
Confidence 99999888877666665554322100 00 0 00000011 111111 1111111110011122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 168 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV 247 (445)
Q Consensus 168 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (445)
.....||..+....+++...+.++-+.|||+..-..++.+..+..|...+++-.+..+.+.+++.....+....|++.|.
T Consensus 149 tea~~R~~~~~~v~lG~~~~~vF~~~TrEP~~~~~~~~s~~~Rm~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfv 228 (412)
T KOG4830|consen 149 TEALIRLAGWLVVVLGITVAFVFYAFTREPTNSFSSDASELVRMHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFV 228 (412)
T ss_pred HHHHHHHhhhheeeeceeEEEEEeecccCcccccCcchhhhhcccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEE
Confidence 34567887766555665555555667889875544444445556677778898999999999999999999999999999
Q ss_pred HhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 013324 248 INDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (445)
.+++++..+..++++.+..+.+...+.+.....+-++|.|.....|.+....++..+...+++-....++..++.|+..+
T Consensus 229 iddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgiiwifcga~ilLlpr~i~symyAisvfIGIAnA 308 (412)
T KOG4830|consen 229 IDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGIIWIFCGAVILLLPRGIKSYMYAISVFIGIANA 308 (412)
T ss_pred eehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccHHHHHhhhheeecccchHHHHHHHHHHHHHHHH
Confidence 99999998888889998888888877776544344555466667777777777777776665544556677788999999
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
........+.+....++..+.+..+|.+++..++...++-.++..-.
T Consensus 309 imlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA~~lie~~~ 355 (412)
T KOG4830|consen 309 IMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIAYQLIELWT 355 (412)
T ss_pred HHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHHHHHHHhcC
Confidence 88877777777777777766678999999999999999988876644
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-19 Score=172.65 Aligned_cols=306 Identities=12% Similarity=0.093 Sum_probs=211.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------------HHHhhhh
Q 013324 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF-------------------GWAATQV 115 (445)
Q Consensus 55 g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~-------------------~~~~~~~ 115 (445)
+.++.+.|++.+.+..++.+++.+.|++.||+|-||++...+ +..+++..+.- +.+....
T Consensus 69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~-~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~p 147 (466)
T KOG2532|consen 69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISG-LISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFP 147 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHH-HHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHh
Confidence 678899999999999999999999999999999999855443 33444433321 1222223
Q ss_pred hHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 013324 116 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 195 (445)
Q Consensus 116 ~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 195 (445)
....+...+.+ ++||++..++...+..+|.++...+++.+.. ...||++.|++.++++++..++++....
T Consensus 148 a~~~i~~~W~P-~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~---------s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 148 AIGSILAKWAP-PNERSTFIAILTAGSQLGTIITMPVSGLLCE---------SSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hhhceeeeECC-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc---------cCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 33344455554 8899999999999988888887777776653 2379999999999999998887766665
Q ss_pred ccccccc-----c-------cC----CcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 013324 196 EPRLKMG-----L-------RG----NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA 259 (445)
Q Consensus 196 e~~~~~~-----~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (445)
|++.+++ | +. +++.+.+++++++++++|...+..+........+..|.|.|+++.+|++..+.|
T Consensus 218 d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G 297 (466)
T KOG2532|consen 218 DSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG 297 (466)
T ss_pred CCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh
Confidence 5433211 0 00 111245799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhh-----h-hH-HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhh
Q 013324 260 LVPAIIYICSFIVSILLQEM-AWTGQR-----L-KA-YYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMV 331 (445)
Q Consensus 260 ~~~~~~~~~~~ig~~l~~~~-~~~~~r-----~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (445)
++.++-.+...+..++.+.+ +++..| . || .-.++....++.++.+.+.+..+.+..++...+ ..+......
T Consensus 298 ~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~-~~~~~g~~~ 376 (466)
T KOG2532|consen 298 FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTI-AIGLSGFNI 376 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHH-HHHHcccch
Confidence 98888888888888887765 333221 1 33 234555555555555555553333332222221 111111111
Q ss_pred hHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 332 TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
........+..+++.+ ...|+.++...+.+.++|.+++.+-
T Consensus 377 ~Gf~~~~~~~apq~a~--~l~g~~~~~~~~~~~~~P~~vg~~~ 417 (466)
T KOG2532|consen 377 SGFYKNHQDIAPQHAG--FVMGIINFVGALAGFIAPLLVGIIV 417 (466)
T ss_pred hhhHhhhhhccchHHH--HHHHHHHHHHHHHHHHHHHheeeEe
Confidence 1111122222567777 9999999999999999999988876
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-17 Score=155.27 Aligned_cols=308 Identities=13% Similarity=0.118 Sum_probs=223.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccC-----CchHHHHHHHHHHHHHHHHHH-----------------
Q 013324 51 LTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-----HFKIWHGAGSVLVAVSFSSVF----------------- 108 (445)
Q Consensus 51 ~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~G-----rrr~~ll~~~i~~~~~~~~~~----------------- 108 (445)
..|+++++...+.+++...+.. ...|++|+.||+++ ||.||+..+......+...+.
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 4577999999999998886655 46999999999999 999999988887776544332
Q ss_pred ----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHH
Q 013324 109 ----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 172 (445)
Q Consensus 109 ----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~ 172 (445)
+......++.++..|.++ ||+|+++.++.+..-.+|.+++..+.+.++.-+. ...-
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~-e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s-------~~rL 157 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAP-EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS-------PERL 157 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC-------HHHH
Confidence 223456788899999986 8899999999988888888888777776654221 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccc----cccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 173 RWIAYSSIFIGCCFVGIFLSRTEEPRLKM----GLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 248 (445)
Q Consensus 173 ~~~~~~~~~~~~i~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (445)
...+...+++.+++.++..+ ..|++.++ +++++.+.++.++++..+|+...++...++....+..-...+=+|--
T Consensus 158 ~~v~~~~a~i~~~l~~ia~w-g~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg 236 (403)
T PF03209_consen 158 IQVIQGVALIALLLNLIALW-GQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGG 236 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchh
Confidence 22333333444444333333 34443322 23445677888999999998888777777777788888888889999
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHH
Q 013324 249 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVGIAN 326 (445)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~ 326 (445)
+.+|++..+...+......+.++|..+.+++ .+..++ ++...+++..++.++..+.... ..+.|.+-...+++|++.
T Consensus 237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~-~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK-KRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 9999999998888888899999998888863 322222 4556677777777766655443 346778888889999999
Q ss_pred hHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 327 ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
|.......+..-+.+++++.| ++.|.+...+.++..++..+-+
T Consensus 316 G~f~vgals~mM~lt~~~~aG--~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAG--LFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 998877777777778888888 8888888777776665554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-17 Score=150.12 Aligned_cols=315 Identities=13% Similarity=0.124 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-H-------H-
Q 013324 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-V-------F- 108 (445)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~-~-------~- 108 (445)
.....+.+.++..-.|.|+|.+.+|.+.++..++.++..|+..+|+.|+|.+|.. ..+.++..++... . +
T Consensus 26 ~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l-~~~Llli~~G~~iR~~~~~~~L~~ 104 (395)
T COG2807 26 PAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSL-FLALLLIAAGILIRSLGGLPLLFL 104 (395)
T ss_pred hhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH-HHHHHHHHHHHHHHhcccHHHHHH
Confidence 3445566777777888899999999999999999999999999999999998873 3344444333222 1 1
Q ss_pred -------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 013324 109 -------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF 181 (445)
Q Consensus 109 -------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~ 181 (445)
+-+..|+-..+++-+.. +++-+.+++.+...-..+..+++.+..|+... ..+||.....-+.
T Consensus 105 gt~l~G~gIav~nVLLPslIK~~F--pk~~~~mtglYs~sl~~~aaLaa~lavpla~~---------~~gW~~aL~~WAl 173 (395)
T COG2807 105 GTLLAGAGIAVINVLLPSLIKRDF--PKRVGLMTGLYSTSLGAGAALAAALAVPLAQH---------SGGWRGALGFWAL 173 (395)
T ss_pred HHHHHHhhHHHHHHhhhHHHHhhc--ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh---------hccHHHHHHHHHH
Confidence 11222333333333322 56667888888888888888998888888653 2479998877777
Q ss_pred HHHHHHHHHhcc-cccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH
Q 013324 182 IGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL 260 (445)
Q Consensus 182 ~~~i~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (445)
.+++.++..+.. .||+ .+..+.+ ..+-..++|||.-|.+.+.+-+.+..++....|+|.++.|. |+|+.+++.
T Consensus 174 ~allAl~~WlPq~~r~~--~~~~~~~---~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~ 247 (395)
T COG2807 174 LALLALLIWLPQALREQ--AASIATK---LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGS 247 (395)
T ss_pred HHHHHHHHHhhhccccc--ccccccc---cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhh
Confidence 777777665433 2221 1111111 11124578999999999999999999999999999999975 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccc
Q 013324 261 VPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNV 339 (445)
Q Consensus 261 ~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 339 (445)
......+..+..+++.+.+ +|..|+ |+......+++.++.+.+.+.+.+.+++. .+++|+|.|..++........
T Consensus 248 llsl~~l~~~~~~ll~P~la~R~~n~-r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~laL~li~~ 323 (395)
T COG2807 248 LLSLMQLAQLPTALLIPLLARRSKNQ-RPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLALTLILL 323 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHHHHHHHh
Confidence 8888999999999988875 443333 66677777777888888877664444443 478999999999988777766
Q ss_pred ccccccccchhHHhHHHHHHHHH---HHHHHHHHHHccccCC
Q 013324 340 LVGEDLSGCAFVCGTLSFLDKMS---CGIAVYVLQSYQSMSP 378 (445)
Q Consensus 340 ~~~~~~~g~~~~~~~~~~~~~ig---~~i~~~l~~~~~~~~~ 378 (445)
.+++.+.. ...-.+.+.+| .++||.+++.+-+..+
T Consensus 324 rs~~a~~A----a~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 324 RSSDAAIA----AALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred hcCChHHH----HHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 54433322 22233444444 4566778777765444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=166.23 Aligned_cols=313 Identities=15% Similarity=0.127 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH---------------
Q 013324 44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF--------------- 108 (445)
Q Consensus 44 ~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~--------------- 108 (445)
...++....|+|-+ ....|+.+...+..++..|+.|+|+|.||||.. ++.+.++..++...+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~ 141 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-FIIGSLLGVVGSIVCATAQNMNTFIAGMVLY 141 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence 34566667778665 566788899999999999999999999999876 4555555555554433
Q ss_pred HH-HhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHH
Q 013324 109 GW-AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFV 187 (445)
Q Consensus 109 ~~-~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 187 (445)
+. ...+......++|+.+ .+.|.....+... ..++....++.+...+. .+.+|||.+.+.+++..+.+
T Consensus 142 GvgaG~~~~~~~~isEl~p-~k~R~~~~~~~~~----~~i~~~~~~~~ia~~~~------~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 142 GVGAGVQELAALAISELVP-NKWRGLGLAIASI----PFIITTWISPLIAQLFA------AHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHhhHHHHHHHHHHHHhcc-cchhhhHhHHHHH----HHHhhhcccHHHHHHhc------cCCCcchHHHHHHHHHHHHH
Confidence 11 1111122334577775 4455443332222 22222222222222211 24589999887777655554
Q ss_pred HHHhc-cccccccc-cccc----C-----------------------------Cc------c----------------h-
Q 013324 188 GIFLS-RTEEPRLK-MGLR----G-----------------------------NS------H----------------A- 209 (445)
Q Consensus 188 ~~~~~-~~~e~~~~-~~~~----~-----------------------------~~------~----------------~- 209 (445)
+..++ +.|.++.+ +.++ + .. + .
T Consensus 211 vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~w 290 (599)
T PF06609_consen 211 VLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVW 290 (599)
T ss_pred HHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHh
Confidence 33322 22221110 0000 0 00 0 0
Q ss_pred ------HHH--HHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch---hhhHHHHHHHHHHHHHHHHHH
Q 013324 210 ------RIS--WAYWFKK-ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQ 277 (445)
Q Consensus 210 ------~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~ig~~l~~ 277 (445)
+++ -.+++|+ |.+....+..++....++....+.|.......+.++. ..++......++...|+.+.+
T Consensus 291 E~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g 370 (599)
T PF06609_consen 291 EWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILG 370 (599)
T ss_pred hhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHH
Confidence 000 0346776 4455545555555556666777888887766555542 345666667777778877777
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHH
Q 013324 278 EMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSF 357 (445)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 357 (445)
.+-+..||.|..++++.+++.+.+..+....+++....+...++.|++.|..........+..+|+++-| ++.++...
T Consensus 371 ~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig--~a~gL~~s 448 (599)
T PF06609_consen 371 LLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIG--TATGLTGS 448 (599)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHH--HHHHHHHH
Confidence 6544456668877788777776656665555455445567778889999988877778888888999988 88889889
Q ss_pred HHHHHHHHHHHHHH
Q 013324 358 LDKMSCGIAVYVLQ 371 (445)
Q Consensus 358 ~~~ig~~i~~~l~~ 371 (445)
.+.+|+++|..+..
T Consensus 449 ~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 449 IRSIGGSIGYAIYN 462 (599)
T ss_pred HHHHhhHHHHHHHH
Confidence 99999888866553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-16 Score=154.72 Aligned_cols=337 Identities=13% Similarity=0.049 Sum_probs=207.2
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc-CCchHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLVA 101 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~-Grrr~~ll~~~i~~~ 101 (445)
+..+......+...+..+.+..++|.|+++. |.++.+.+.+.+.+.....++.++.|+++||+ ||||.+++ +.+...
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~ili-G~il~~ 87 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVML-GALLMA 87 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH-HHHHHH
Confidence 4444444455666777888888999999886 99999999999999999999999999999999 99998544 333333
Q ss_pred HHHHHHH------------------HHHhhhhhHhhhhhhcccCc-cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013324 102 VSFSSVF------------------GWAATQVAHMSMVNCITLNS-TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 162 (445)
Q Consensus 102 ~~~~~~~------------------~~~~~~~~~~al~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 162 (445)
++...+. +.+.......+++.+..+++ ++|....++.+.+.++|+.+++.+.+.+.
T Consensus 88 lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~----- 162 (493)
T PRK15462 88 IGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ----- 162 (493)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH-----
Confidence 2221110 11122233456677877643 46888888888888888888888877764
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcccc---cccc-cccccCCcchH-----------------------HHH--
Q 013324 163 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE---EPRL-KMGLRGNSHAR-----------------------ISW-- 213 (445)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~---e~~~-~~~~~~~~~~~-----------------------~~~-- 213 (445)
+..||++.|.+.++..++..+......| +... ++++.++++.. +.+
T Consensus 163 -----~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (493)
T PRK15462 163 -----EEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSV 237 (493)
T ss_pred -----hhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2468999887755433333333222111 1100 01000000000 000
Q ss_pred --------------HHHHh------ch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccchhhhHHHHH
Q 013324 214 --------------AYWFK------KI-LYY---QVALVYMLTRLVVNVSQAYLAFYVINDL-----RMGQSAKALVPAI 264 (445)
Q Consensus 214 --------------~~~~~------~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~ 264 (445)
..+.+ +| +.. .+.+...+++..+....+-+..|..+.. |++ ...+++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qsl 316 (493)
T PRK15462 238 YALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSI 316 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhH
Confidence 00000 11 221 2222333344444444444455554432 221 113466666
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhh-----hHHHHHHHHHHHHHHHHHhhc----cC---chhHHHHHHHHHHHHHHhHhhh
Q 013324 265 IYICSFIVSILLQE-MAWTGQRL-----KAYYSAGGVLWVFCGAGILIL----PM---NMSAFMYVLAIFVGIANALMMV 331 (445)
Q Consensus 265 ~~~~~~ig~~l~~~-~~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~l~g~~~~~~~~ 331 (445)
..+.-++.+++..+ +.++.||. -.-+.+|+++++++++.+.+. .. .+.++++...+++++|.-...|
T Consensus 317 Np~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sP 396 (493)
T PRK15462 317 NAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDP 396 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHCh
Confidence 76666666766655 45553321 112678888888887766432 11 2556677888899999999999
Q ss_pred hHhhhcccccccccccchhHHhHHHHHH-HHHHHHHHHHHHHcc
Q 013324 332 TGISMQNVLVGEDLSGCAFVCGTLSFLD-KMSCGIAVYVLQSYQ 374 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ig~~i~~~l~~~~~ 374 (445)
...++..+..|+|.+| ...|.+.+.. .+|+.+++.+.+...
T Consensus 397 vgls~~~~laP~~~~g--~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 397 VAMSQITRIEIPGVTG--VLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHHHHhChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 8889886644 688888888777664
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-18 Score=167.86 Aligned_cols=325 Identities=11% Similarity=0.019 Sum_probs=197.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccC----CchHHHHHHHHHHH-HH
Q 013324 30 GSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG----HFKIWHGAGSVLVA-VS 103 (445)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~G----rrr~~ll~~~i~~~-~~ 103 (445)
+..-+...+. ..+...+++++++ +|+++++++...+...+...+ .|++|.++||++ |||.|++.+.+... ..
T Consensus 32 ~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~ 109 (468)
T TIGR00788 32 LQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAIL 109 (468)
T ss_pred HHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence 3334555666 6666677777776 599999999999999999888 566999999985 46666666655442 22
Q ss_pred HHHHH------------------HHHhhhhhHhhhhhhcccCccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013324 104 FSSVF------------------GWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 163 (445)
Q Consensus 104 ~~~~~------------------~~~~~~~~~~al~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 163 (445)
..... +.+...++..+++.|..+ +++ ++...+..+....+|.++++.+++.+.+
T Consensus 110 ~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~----- 183 (468)
T TIGR00788 110 YGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD----- 183 (468)
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 11110 333455666677777665 222 2223334344445788888888877653
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhcccccccc-cccc-cCC----------------cchHHHHHHHHhchHHHHH
Q 013324 164 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-KMGL-RGN----------------SHARISWAYWFKKILYYQV 225 (445)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~-~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~ 225 (445)
..+|+..+.+.+.+.++..+. ....+|++. ..++ +++ ++......+.+++|..+..
T Consensus 184 -----~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~ 257 (468)
T TIGR00788 184 -----KTLTRILFLITAALLLLQLFV-SNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKP 257 (468)
T ss_pred -----hcCcchHHHHHHHHHHHHHHH-HHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 357899888877776666333 344566531 1111 010 0111234555777877765
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHH
Q 013324 226 ALVYML-TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGA 302 (445)
Q Consensus 226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~ 302 (445)
.+..++ +.........+ -.+..+..|.++.+.|......+++.+++..+.++ +.+|+ |+.+.++.++.+++.+
T Consensus 258 l~fifl~~~~~~~~~~~~-f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~---~~~~~~~r~~l~~~~~l~~~~~~ 333 (468)
T TIGR00788 258 LIFIFLSYANLPGASGSV-FCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDR---FLKTFPYRLLFGVTTLLYTLSSL 333 (468)
T ss_pred HHHHHHHHhhcCCCCcee-EEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHh
Confidence 444444 22221111111 11334568999999998888888888888877774 33444 7777777777766554
Q ss_pred HHhhcc--------CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHH----HHH
Q 013324 303 GILILP--------MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV----YVL 370 (445)
Q Consensus 303 ~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~----~l~ 370 (445)
...... ....+.+....++.+++.+........+..+..|++.+| +.+++.+....+|..+++ .+.
T Consensus 334 ~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~eg--t~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 334 FDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCES--SVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred CceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCcee--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432110 022344455667888888887877788888889999988 555555555555555554 455
Q ss_pred HHcc
Q 013324 371 QSYQ 374 (445)
Q Consensus 371 ~~~~ 374 (445)
..++
T Consensus 412 ~~~g 415 (468)
T TIGR00788 412 ETIG 415 (468)
T ss_pred HHcC
Confidence 5555
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-17 Score=161.63 Aligned_cols=313 Identities=14% Similarity=0.074 Sum_probs=219.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-HH---------------
Q 013324 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-VF--------------- 108 (445)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~-~~--------------- 108 (445)
.+.+.+.++++.+.++++|+.++......+..|+.+.+.||+|.|++.+++ .++...+..+ .|
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G-~~v~~~g~~lssF~~~i~~l~lt~gvi~ 145 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAG-GLVAALGLLLSSFATSLWQLYLTFGVIG 145 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 345666666799999999999999999999999999999999998885554 4444444433 33
Q ss_pred --HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHH
Q 013324 109 --GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCF 186 (445)
Q Consensus 109 --~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 186 (445)
+.++...|...++.... +++|+.++++...+..+|.++-+.+.-.++ +..|||+...+.+.+.+-.
T Consensus 146 G~G~~~~~~paiviv~~YF--~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~----------~~~G~r~~~l~~~~~~l~~ 213 (509)
T KOG2504|consen 146 GLGLGLIYLPAVVILGTYF--EKKRALATGIAVSGTGVGTVVFPPLLKYLL----------SKYGWRGALLIFGGISLNV 213 (509)
T ss_pred hccchhhhcchhhhhhhHh--HHHHHHHHhhhhccCCcceeeHHHHHHHHH----------HHhCcHHHHHHHHHHHHHH
Confidence 23334445444444333 688999999999988888877665555554 3579999888777766555
Q ss_pred HHHHhcccc--------------------cc-------cc-c----ccc------------cC-Cc--chHHHH----HH
Q 013324 187 VGIFLSRTE--------------------EP-------RL-K----MGL------------RG-NS--HARISW----AY 215 (445)
Q Consensus 187 ~~~~~~~~~--------------------e~-------~~-~----~~~------------~~-~~--~~~~~~----~~ 215 (445)
.+......| |. +. + ..+ ++ .+ ..+..+ .+
T Consensus 214 ~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 293 (509)
T KOG2504|consen 214 LVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLS 293 (509)
T ss_pred HHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHH
Confidence 555444333 00 00 0 000 00 00 111122 57
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHH
Q 013324 216 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQ-RLKAYYSAGG 294 (445)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~-r~~~~~~~~~ 294 (445)
++|+|.|+.+.+...+...++.....++|.|.. ..|.+....+....+.++..+++.++.|++.+... +.+....++.
T Consensus 294 ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~l 372 (509)
T KOG2504|consen 294 LLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTL 372 (509)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHH
Confidence 899999998888888888888888999999998 56999988888999999999999999986533222 1133444555
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 295 VLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+..+++.+...+ ..+.+.+....+++|+..|...........+..+.++-. -++|+..+.+.++..+|+.+.+.+-
T Consensus 373 l~~gl~~~~~p~--~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~--~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 373 LIAGLARLFLPF--ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS--NAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred HHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc--hHHHHHHHHhHHHHHcCcccceeee
Confidence 554444433333 346677788888999999988876666666667777766 7889999999999999999988655
Q ss_pred c
Q 013324 375 S 375 (445)
Q Consensus 375 ~ 375 (445)
+
T Consensus 449 d 449 (509)
T KOG2504|consen 449 D 449 (509)
T ss_pred e
Confidence 3
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-19 Score=166.09 Aligned_cols=340 Identities=11% Similarity=0.042 Sum_probs=211.8
Q ss_pred CchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 013324 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~ 100 (445)
-+++......+.+.++..+-+.+.+.++-.-+.+|++++..|++.+++.+...++.|++|+|+|||.||+++. .|....
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~-vG~~iW 108 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIA-VGIFIW 108 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEe-eHHHHH
Confidence 3455566677888888888888877666666667999999999999999999999999999999999998743 344444
Q ss_pred HHHHHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013324 101 AVSFSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 163 (445)
Q Consensus 101 ~~~~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 163 (445)
.++.+.. + +-+.......+++.|..+ +++|++..++.+.+..+|..+|.+++..+..+
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~-~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~---- 183 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFP-DDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL---- 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCc-chhhhHHHHHhhhhcccccceeEEeeeeeccC----
Confidence 4443332 2 223344445677788876 78899999999999888888877666554332
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccc-c-cC-------CcchHHHHHHHHhchHHHHHHHHHHHHHH
Q 013324 164 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-L-RG-------NSHARISWAYWFKKILYYQVALVYMLTRL 234 (445)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~-~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (445)
...|||.+...++++++..++.+++++||++... + ++ ..+..++.+.+.|+|.+....+.+.....
T Consensus 184 -----~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f 258 (493)
T KOG1330|consen 184 -----TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQF 258 (493)
T ss_pred -----ccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHH
Confidence 2239999999999999999888888998765321 1 11 12345666777888887777777777777
Q ss_pred HHHHHHHHHHHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhH--------HHHHHHHHHHHHHH
Q 013324 235 VVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA--------YYSAGGVLWVFCGA 302 (445)
Q Consensus 235 ~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~--------~~~~~~~~~~~~~~ 302 (445)
..+++..+.|.+..... |.+.....++..+...+..+|....+.+ +++.+++++ ......+...+.++
T Consensus 259 v~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L 338 (493)
T KOG1330|consen 259 VIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFL 338 (493)
T ss_pred hccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHH
Confidence 77777777777765432 3344444455555556666666666654 333333311 11111111111111
Q ss_pred HHhhccCchhHHHHHHHHHHHHHHhHh-hhhHhhhcccccccccccchhHHhHHHHHHHHHHHHH-HHHHHHc
Q 013324 303 GILILPMNMSAFMYVLAIFVGIANALM-MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIA-VYVLQSY 373 (445)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~-~~l~~~~ 373 (445)
.+............+.+++.|...... ++....+..+.+|+++|. +++++......+.+-.+ |.+++.+
T Consensus 339 ~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt--~a~a~~~~~~h~fgd~~~p~ivGil 409 (493)
T KOG1330|consen 339 FLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRT--TAYALDTVFEHIFGDAASPYIVGIL 409 (493)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCccccc--HHHHHHHHHHHHhccCCCcceehhH
Confidence 111111222222233334444433332 234445556667888888 66666555444433332 3344443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=155.68 Aligned_cols=309 Identities=12% Similarity=0.010 Sum_probs=207.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----------------HHHhhhhhHh
Q 013324 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----------------GWAATQVAHM 118 (445)
Q Consensus 55 g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----------------~~~~~~~~~~ 118 (445)
+-+.+++|++.+...+.+.+..|+.|.+.||+|+|-+++++..+.+..+....+ +.++..+...
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 667889999999999999999999999999999998865544433333333333 4556667777
Q ss_pred hhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 013324 119 SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 198 (445)
Q Consensus 119 al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 198 (445)
+++++..++++||+++.+....+..+|-++++..++.+.+. .|.+.+|.+++++.++-..+.++..+..+
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~----------~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF----------AGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh----------cCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 88899999999999999999999999999999988888653 57788898888887777766655443322
Q ss_pred ccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013324 199 LKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE 278 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~ 278 (445)
.++++ .....++.+++++|..+.........+.+......-++.+..+.+..+..+.++......+...++..+.+.
T Consensus 252 ~~~~~---~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~ 328 (464)
T KOG3764|consen 252 MDPDS---TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGK 328 (464)
T ss_pred cCccc---cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHH
Confidence 22211 112334678899999887777766666777777888888898888866667787777788888899988885
Q ss_pred HHHhhhhhhHH-HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccccccccccc----chhHHh
Q 013324 279 MAWTGQRLKAY-YSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG----CAFVCG 353 (445)
Q Consensus 279 ~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~ 353 (445)
+.++.+..|+. ...+++....+.....+.+ +....++.....+++.+...+...-........|+.. .|..++
T Consensus 329 la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~--~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVya 406 (464)
T KOG3764|consen 329 LADKYPHLRWLLSLGGLATVGVSSGPIPFAT--SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYA 406 (464)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHhchhHhhh--hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHH
Confidence 53333311332 2233333333333333333 4444444444555555544432222222222222222 247888
Q ss_pred HHHHHHHHHHHHHHHHHHHccccCC
Q 013324 354 TLSFLDKMSCGIAVYVLQSYQSMSP 378 (445)
Q Consensus 354 ~~~~~~~ig~~i~~~l~~~~~~~~~ 378 (445)
+...+..+|.++||.+.+..-+..+
T Consensus 407 Iad~a~sla~a~GP~~gg~iv~~iG 431 (464)
T KOG3764|consen 407 IADAAFSLAYAIGPTFGGSLVEAIG 431 (464)
T ss_pred HHHHHHHHhhhccccccchheeehh
Confidence 8888888888888887777665444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-16 Score=151.04 Aligned_cols=341 Identities=10% Similarity=0.008 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H-----------------H-HHhhhhhHh-h
Q 013324 60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F-----------------G-WAATQVAHM-S 119 (445)
Q Consensus 60 ~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~-----------------~-~~~~~~~~~-a 119 (445)
..+.+++++.+..++++...|.++||+|||..+++. .+....+..+. + + ......... -
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~-~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pm 139 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLS-NLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPM 139 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 457778899999999999999999999999765443 33333333222 2 1 111111122 2
Q ss_pred hhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 013324 120 MVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 199 (445)
Q Consensus 120 l~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 199 (445)
.+.|..| ++-||.+......+..+|.+++..++.+-+ ++ ....|.+.+....+.+++..+.. .+.||.++
T Consensus 140 yl~E~sP-~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i--lG------t~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk 209 (485)
T KOG0569|consen 140 YLTEISP-KNLRGALGTLLQIGVVIGILLGQVLGLPSL--LG------TEDLWPYLLAFPLIPALLQLALL-PFLPESPK 209 (485)
T ss_pred HHhhcCh-hhhccHHHHHHHHHHHHHHHHHHHHccHHh--cC------CCcchHHHHHHHHHHHHHHHHHH-hcCCCCcc
Confidence 3456665 788999999999999999998876664432 22 35679998877777666665554 44566432
Q ss_pred -----cccc--------------cCC----------------cchHHHHHHHHhchHHHHH----HHHHHHHHHHHHHHH
Q 013324 200 -----KMGL--------------RGN----------------SHARISWAYWFKKILYYQV----ALVYMLTRLVVNVSQ 240 (445)
Q Consensus 200 -----~~~~--------------~~~----------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 240 (445)
+.++ +++ ++...+++++++|+..+.- ....+...+......
T Consensus 210 ~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai 289 (485)
T KOG0569|consen 210 YLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAI 289 (485)
T ss_pred hHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCccee
Confidence 0000 000 0012246788888665432 222333333333334
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhcc---Cch-hHHH
Q 013324 241 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILP---MNM-SAFM 315 (445)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~ 315 (445)
.++...+....|++...+.+.....++..++..++... ++|.+| |+.++.+..++.+..+.+.... ... .|..
T Consensus 290 ~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gR--RpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (485)
T KOG0569|consen 290 FFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGR--RPLLLISLSLMAVALLLMSIALFLSNSFGSWLS 367 (485)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45555555567999888777777778888888888876 466665 6777777777766655554321 111 2322
Q ss_pred ---HHHHHHHHHHHhHh-hhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCccccCCCcccccc
Q 013324 316 ---YVLAIFVGIANALM-MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLT 391 (445)
Q Consensus 316 ---~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 391 (445)
+...+++.++++.- .|..+-+.+|++|++.|. .+.++..+...+...+-+...-.+....+
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~--aa~s~~~~~~w~~~fiv~~~fp~l~~~~g------------- 432 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS--AAQSVATAVNWLSNFIVGFAFPPLQNVIG------------- 432 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 23334444444443 456777889999999998 66666666666666555443322221111
Q ss_pred cccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHHHhccCCC-cCchhhhhhhc
Q 013324 392 VLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHT-PYSKPLVEPLL 444 (445)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~ 444 (445)
. +.+.+....+++..+.+.++.|.+| |+.+|+.+++.
T Consensus 433 --------------~--~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 433 --------------P--YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred --------------c--hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 1 2233444445566666677788777 44577777764
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-15 Score=143.50 Aligned_cols=323 Identities=9% Similarity=-0.003 Sum_probs=183.0
Q ss_pred chhHHHH--HhhhhhHHHHHHHHHHHHHHHHHH-HhCCCHHH-HHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 013324 22 GRWSVLY--YGSGHMLNDITAACWFTYLLLFLT-DIGLSPRG-AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (445)
Q Consensus 22 ~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~-~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~ 97 (445)
+.|.+.. .++..|..++ -.-.++..+++. |.|+|+++ .|.+.+++...+++.+++.|+++||+|.||.+.+. .
T Consensus 23 ~~W~~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~-~ 99 (511)
T TIGR00806 23 KSWRVLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQ-A 99 (511)
T ss_pred cchhHHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH-H
Confidence 3344444 4555555544 333345555555 45999999 99999999999999999999999999998875443 3
Q ss_pred HHHHHHHHH-HH------------HHH---hhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013324 98 VLVAVSFSS-VF------------GWA---ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 161 (445)
Q Consensus 98 i~~~~~~~~-~~------------~~~---~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 161 (445)
+...+...+ .+ .++ +...++...+..+.+ ++||+++.++...+..+|.++++.+++.+.
T Consensus 100 l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP-~kER~ratsi~~sg~~vG~~Ia~~L~qll~---- 174 (511)
T TIGR00806 100 LSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVP-PSRYQRAAAYSRAAVLLGVFLSSVLGQLLV---- 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 333333222 22 222 222255566666665 889999999999999999999888877732
Q ss_pred cccccchhhHHHHH---HHHHHHHHHHHHHHHhcccccccc------c------------c--cccC--Cc---------
Q 013324 162 AKTHADLENQYRWI---AYSSIFIGCCFVGIFLSRTEEPRL------K------------M--GLRG--NS--------- 207 (445)
Q Consensus 162 ~~~~~~~~~g~~~~---~~~~~~~~~i~~~~~~~~~~e~~~------~------------~--~~~~--~~--------- 207 (445)
..|||+- ..+......+.+++.++ .|.+++ + . +++. +.
T Consensus 175 -------s~gWr~y~~Ln~Isl~s~~~a~~~a~~-LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (511)
T TIGR00806 175 -------TLGWISYSTLNIISLVFMTFSVFLALF-LKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDS 246 (511)
T ss_pred -------hcCchhHHHHHHHHHHHHHHHHHHHHh-CCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhH
Confidence 2355543 33332222333333322 221110 0 0 0000 00
Q ss_pred ---chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013324 208 ---HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQ 284 (445)
Q Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~ 284 (445)
....++++..+||....-.+-..+...++.-...|.-..-.+..+-.....|.+-++..+.+.+.++..|+++...+
T Consensus 247 ~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~ 326 (511)
T TIGR00806 247 FLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWA 326 (511)
T ss_pred HHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCch
Confidence 01123344456666544333333333334433333332222221211225565555555556666677776522223
Q ss_pred hh-hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHH
Q 013324 285 RL-KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 363 (445)
Q Consensus 285 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~ 363 (445)
++ ...+.+..++.+. +++.....++.|..++..++++..+....+.+..-++....++.-| +.+|++++..-+-+
T Consensus 327 ~~~~l~l~v~s~~~~g--ll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~a--LvFGiNtfvAl~LQ 402 (511)
T TIGR00806 327 RWSKLLIAVVSAIQAG--LVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCA--LVFGINTFVATALK 402 (511)
T ss_pred hhHHHHHHHHHHHHHH--HhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceE--EEEecHHHHHHHHH
Confidence 33 2222222232222 2333333568999999999999999888887777777666777777 99999988665444
Q ss_pred H
Q 013324 364 G 364 (445)
Q Consensus 364 ~ 364 (445)
.
T Consensus 403 t 403 (511)
T TIGR00806 403 T 403 (511)
T ss_pred H
Confidence 3
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=154.38 Aligned_cols=223 Identities=14% Similarity=0.070 Sum_probs=164.2
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH---------------HHHhhhhh
Q 013324 52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF---------------GWAATQVA 116 (445)
Q Consensus 52 ~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~---------------~~~~~~~~ 116 (445)
+|.+....+.|.+.+++.+.+++++++.|.|.||+.-.|.+...+......+....+ .......|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 344677788999999999999999999999999999666533333322222222221 11122233
Q ss_pred -HhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 013324 117 -HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 195 (445)
Q Consensus 117 -~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 195 (445)
...+++.+. +++||+...++......+|++++++++..+....+. ....||||.|++.+++.++..++.++..|
T Consensus 154 ~~~~~lg~wy-~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~----~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 154 GVVAILGNWY-GKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS----GGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred HHHHHHHhhc-ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC----CCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 334445554 488999999999999999999999888776552221 13579999999999999888877777766
Q ss_pred ccccc------cc--------c-c-----CCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 013324 196 EPRLK------MG--------L-R-----GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQ 255 (445)
Q Consensus 196 e~~~~------~~--------~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 255 (445)
+.+.+ ++ + + +++..+..+++.+|++..|...++.++.....+++..|+|.|+.+..|++.
T Consensus 229 ~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~ 308 (495)
T KOG2533|consen 229 DNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSE 308 (495)
T ss_pred CChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcCh
Confidence 53321 00 0 0 011245677889999999999999999999999999999999999677988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 013324 256 SAKALVPAIIYICSFIVSILLQEM 279 (445)
Q Consensus 256 ~~~~~~~~~~~~~~~ig~~l~~~~ 279 (445)
.++..+.....++.+++.++.+.+
T Consensus 309 ~~a~~ls~~~~~~g~v~~i~ag~l 332 (495)
T KOG2533|consen 309 LQANLLSTPYDVGGIVGLILAGYL 332 (495)
T ss_pred HHhccccchHHhhhHHHHHHHHHH
Confidence 888888888899999999999875
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=137.26 Aligned_cols=314 Identities=13% Similarity=0.020 Sum_probs=182.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH---HHH----------h---hhhhHh
Q 013324 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF---GWA----------A---TQVAHM 118 (445)
Q Consensus 55 g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~---~~~----------~---~~~~~~ 118 (445)
+.+....|.+-+.+.+...+++|.+|.++||+|||.+ ++.+++..+++..... .+. . ..-..-
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-ll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPV-LLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH
Confidence 3466788999999999999999999999999999776 6666665555433321 111 1 111234
Q ss_pred hhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 013324 119 SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 198 (445)
Q Consensus 119 al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 198 (445)
+++.|+.+ +|+|+...+.......+|.++||.+++.+..+....+ ...+..+.++..++...-...+.++.||+-
T Consensus 143 AiisdV~s-ek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g----~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 143 AIISDVVS-EKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG----SYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred HHHHhhcC-hhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc----cCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 66778876 6889999988888889999999999998876321100 111222222222333331222234456642
Q ss_pred cccccc-C-------CcchH--HH-----HHHHHhchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 013324 199 LKMGLR-G-------NSHAR--IS-----WAYWFKKILYY-------QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 256 (445)
Q Consensus 199 ~~~~~~-~-------~~~~~--~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 256 (445)
..++++ + ..+.+ .. -....||++.. .+.+.++.+...+.....+.+.+-.+.+|+++.
T Consensus 218 ~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~ 297 (451)
T KOG2615|consen 218 PLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSM 297 (451)
T ss_pred cchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChh
Confidence 111111 0 00000 00 11234554422 222334444444444444444444567899988
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhh
Q 013324 257 AKALVPAIIYICSFIVSILLQ-EMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGIS 335 (445)
Q Consensus 257 ~~~~~~~~~~~~~~ig~~l~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (445)
+.|.+....++.+.+...... ++++..+-.+.....+..++.-.++.+... .....+.+...+..+..+...+....
T Consensus 298 ~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l~sf~~A~~vt~Lt~ 375 (451)
T KOG2615|consen 298 QQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTLKSFSTASVVTCLTS 375 (451)
T ss_pred hheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHHHHHHHHhhHHHHH
Confidence 877665555555444443322 122211111333444444444343333332 24455567777888888888888888
Q ss_pred hcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCC
Q 013324 336 MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP 378 (445)
Q Consensus 336 ~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~ 378 (445)
++....|++++| ...|+......++-++||.+.+...++..
T Consensus 376 Lv~~~~~~~qrG--~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~ 416 (451)
T KOG2615|consen 376 LVHKYGPQSQRG--TLNGIFRSLGALARAIGPLVSGVIFSWSQ 416 (451)
T ss_pred HHHhcCCcccch--HHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence 999999999999 88887777777777888887777665544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=158.81 Aligned_cols=271 Identities=9% Similarity=0.015 Sum_probs=178.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 013324 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (445)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~ 108 (445)
+.+..+...+..+...+.++..-++++++.++.|++.+.+.+..++..++.|+++||+||||. +..+.++++++.++..
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-IGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE-EEecHHHHHHHHHHHh
Confidence 333444445555666667777777789999999999999999999999999999999999886 4444444444433221
Q ss_pred -H---------------------------------------------------------------HH----hhhhhHhhh
Q 013324 109 -G---------------------------------------------------------------WA----ATQVAHMSM 120 (445)
Q Consensus 109 -~---------------------------------------------------------------~~----~~~~~~~al 120 (445)
. .+ .......++
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~ 196 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY 196 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence 0 00 011111233
Q ss_pred hhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccc----------cccchh--hHHHHHHHHHHHHHHHHHH
Q 013324 121 VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK----------THADLE--NQYRWIAYSSIFIGCCFVG 188 (445)
Q Consensus 121 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------~~~~~~--~g~~~~~~~~~~~~~i~~~ 188 (445)
+.|.. ++++|+++.++......+|..+++++++.+...+... +..+++ .+|+..|++.++++++..+
T Consensus 197 i~d~~-~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 197 IDDFA-KSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhccC-CccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34544 4788999999999999999999999988877643210 011112 2477788887777766655
Q ss_pred HHhccccccccc---cc----cc-------CC---------cchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 189 IFLSRTEEPRLK---MG----LR-------GN---------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 245 (445)
Q Consensus 189 ~~~~~~~e~~~~---~~----~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (445)
..++..++.+.+ .+ ++ ++ ++....+++++|||.++...+...+......++.+|+|.
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~ 355 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK 355 (633)
T ss_pred HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332111 00 00 00 012244678899999998888888888888889999999
Q ss_pred HHHhhhcccchhhhHHHHHHHH-HHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 013324 246 YVINDLRMGQSAKALVPAIIYI-CSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 301 (445)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~~~~~-~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~ 301 (445)
|+++.+|+++.+++.+.....+ +.++|.++.+++ +|+..+.|+.+..+.++..++.
T Consensus 356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 9999999999988877766554 456777777753 3333333555555555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=140.37 Aligned_cols=395 Identities=12% Similarity=-0.005 Sum_probs=207.1
Q ss_pred CCCCchhHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHh----C----CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 013324 18 TQPVGRWSVLYYGSGHMLNDITAA---CWFTYLLLFLTDI----G----LSPRGAAAVMLSGQIADGFATIFIGELIDRF 86 (445)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----g----~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~ 86 (445)
.++++|++.-+..+..++.-.+.+ +++...+.+-.-. + .++...+.+..+..+...++|+++|+++||+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345678887666655554433222 2332333322222 1 5667888999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHH---------------HHH-------hhhhhHhhhhhhcccCccccchhhhHHHHHHHH
Q 013324 87 GHFKIWHGAGSVLVAVSFSSVF---------------GWA-------ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 144 (445)
Q Consensus 87 Grrr~~ll~~~i~~~~~~~~~~---------------~~~-------~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~ 144 (445)
||||+|..-..+...++..+.. .|. ....|..+.+.....+.++|+...+.......+
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 9999976554443333332221 111 234566666655555678888877665555555
Q ss_pred HHHHHHHHHHHHHHhhcc-ccc----cchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc-----c-----ccCCc--
Q 013324 145 ANLSLYAIAFIVFSVSTA-KTH----ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----G-----LRGNS-- 207 (445)
Q Consensus 145 g~~~~~~~~~~l~~~~~~-~~~----~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~-----~-----~~~~~-- 207 (445)
|.+.+.+++..+...+.. .+. .....-||..+-+-++.+++.+.+. ...||+++-+ + ++.++
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R-l~M~Et~~Y~al~~~~~~~a~~d~~k~~ 270 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR-LKMPETARYTALVSKKLKQAAGDMKKVL 270 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh-hcCCcchhHHHHhhcCHhhhhhcccccc
Confidence 666555555554443321 111 0123459988876656555555444 4456643211 0 00000
Q ss_pred ---------------chHH---HHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH------
Q 013324 208 ---------------HARI---SWAYWFKKI---LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL------ 260 (445)
Q Consensus 208 ---------------~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------ 260 (445)
..++ .+.+.+..+ .........++.-.+.+....+....+.+ .|..+.....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~v 349 (538)
T KOG0252|consen 271 SVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKV 349 (538)
T ss_pred ccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHH
Confidence 0001 122222222 22222333334444555555555444443 3554433222
Q ss_pred --HHHHHHH-HHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHhHhhhhH
Q 013324 261 --VPAIIYI-CSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILPMN---MSAFMYVLAIFVGIANALMMVTG 333 (445)
Q Consensus 261 --~~~~~~~-~~~ig~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~ 333 (445)
...+... +.+.|.++... +++++| |+..+-++.++.+..+.+...... .........+..-++.-.....+
T Consensus 350 A~~~~iia~~~~vPGyw~tv~~id~iGR--k~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~tt 427 (538)
T KOG0252|consen 350 AEGNLIIAVCSTVPGYWFTVYFIDIIGR--KYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATT 427 (538)
T ss_pred HHHHHHHHHHccCCceeEEEEEeehhhh--HHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCcee
Confidence 1111111 11112222222 244444 666777888777766666554321 11111111222223333344556
Q ss_pred hhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCccccCCCcccccccccCCCCCCHhHHHHHHHHHhH
Q 013324 334 ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGL 413 (445)
Q Consensus 334 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (445)
....++.+|.|-|| ++.|+.....++|..++...+...-... +.. . -+.+..+ +
T Consensus 428 fivpaE~FParvR~--t~hGIsAA~GK~GAivg~~~F~~~t~~~-yp~--------------------~--~g~~~v~-~ 481 (538)
T KOG0252|consen 428 FIVPAEIFPARVRS--TCHGISAASGKAGAIVGAFGFLYLTDHN-YPP--------------------N--IGVRNVF-I 481 (538)
T ss_pred EEeehhhchHHHhh--hhhhHHHHhccchHHHHHHHhhHhhhcc-CCc--------------------c--ccchHHH-H
Confidence 66777889999999 9999999999999999887776654311 110 0 0122223 4
Q ss_pred HhHHHHHHHHHHHHhccCCCcC-chhhhhh
Q 013324 414 IPAICSLVSVAVTFTMKLHTPY-SKPLVEP 442 (445)
Q Consensus 414 i~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 442 (445)
+.+.+.+++++..++.|.++.+ .||+.+|
T Consensus 482 i~~~~~~~gi~~T~l~pEtk~~~leei~~e 511 (538)
T KOG0252|consen 482 ILAGCMLLGILFTLLIPETKGKSLEEISNE 511 (538)
T ss_pred HHHHHHHHhHheeEEeecccccCHHHhcCh
Confidence 4456777888888888865543 3445443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=140.59 Aligned_cols=315 Identities=17% Similarity=0.140 Sum_probs=175.9
Q ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc---cC-CchHHHHHHHHHHHHHHHHHH------------
Q 013324 46 YLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDR---FG-HFKIWHGAGSVLVAVSFSSVF------------ 108 (445)
Q Consensus 46 ~l~~~~~~-~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr---~G-rrr~~ll~~~i~~~~~~~~~~------------ 108 (445)
...+|++| +|+++++.....++..+... ..|++|.++|. +| |||+|++.+.+...++.....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 34445555 59999999998888877665 47999999997 45 888998877776644433222
Q ss_pred ---------HHHhhhhhHhhhhhhcccC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 013324 109 ---------GWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYS 178 (445)
Q Consensus 109 ---------~~~~~~~~~~al~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~ 178 (445)
++....+...+++.|..++ +++|+...++.+....+|.+++..+.+++... .++++.+.+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~----------~~~~~~f~i 159 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS----------FGPQGVFLI 159 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc----------CCCeEEehH
Confidence 4445566666677766653 44478888888888888999988888887642 344555555
Q ss_pred HHHHHHHHHHHHhcccccccccccc------cC--C------cchHHHHHHHHhchHHHHHHH-HHHHHHHHHHHHHHHH
Q 013324 179 SIFIGCCFVGIFLSRTEEPRLKMGL------RG--N------SHARISWAYWFKKILYYQVAL-VYMLTRLVVNVSQAYL 243 (445)
Q Consensus 179 ~~~~~~i~~~~~~~~~~e~~~~~~~------~~--~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 243 (445)
.+.+..+..+...+..+|+++.++. ++ + ++....+.+.++.|..+...+ ..++..........-.
T Consensus 160 ~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ 239 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASS 239 (433)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccE
Confidence 5555555544444445552211100 00 0 111223344556666665444 2222222111100000
Q ss_pred HHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHhhc-c-------Cc
Q 013324 244 AFYVINDLR---MGQSAKALVPAIIYICSFIVSILLQEMAWTGQR--LKAYYSAGGVLWVFCGAGILIL-P-------MN 310 (445)
Q Consensus 244 ~~~~~~~~g---~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~~-~-------~~ 310 (445)
-.+..+..+ +++...+....+..++.++|..+... +.++ +|+++....++..+..+.-... . .+
T Consensus 240 fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~---~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~ 316 (433)
T PF03092_consen 240 FYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRK---YFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIP 316 (433)
T ss_pred EEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcC
Confidence 011122334 77777777766666667777666543 3322 2777666665554433321111 1 01
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhHhhhccccccccccc--chhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 311 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..+..+.-.++..+..+..+-+...+..+..|+..+| .|...++.|++..++..++..+...++
T Consensus 317 d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 317 DQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred CeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1133333344555555555545566777888999998 234444455555555555556656555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-13 Score=132.70 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------
Q 013324 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------------- 108 (445)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------------- 108 (445)
....+.+...+++|+|.++++++.+++. ...+.+++.|+++||+|||+++++ +.+...++.....
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vlli-g~ll~~iG~ll~ala~~~~i~~s~~~ 122 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVL-SMTVFCLGTLLFALTFQEVIEGSVVR 122 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHHHHHHHHhcccccCcHHH
Confidence 4444556666667999999999998854 445678889999999999998544 4444443332221
Q ss_pred ----------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 013324 109 ----------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYS 178 (445)
Q Consensus 109 ----------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~ 178 (445)
+.+....+....+.++. +++|+++.++...+..+|+.+.+.+...++ ..+|++.+++
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~F--p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-----------~~~~~~~fl~ 189 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVF--PSNRGAVVAIMKTFTGLGSAILGSIQLAFF-----------SDNTSAYFFF 189 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHH
Confidence 11112223333334443 578999999998888888765333322222 1245555555
Q ss_pred HHHHHHHHHHHHhcccccc
Q 013324 179 SIFIGCCFVGIFLSRTEEP 197 (445)
Q Consensus 179 ~~~~~~i~~~~~~~~~~e~ 197 (445)
.++++++..++....++++
T Consensus 190 l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 190 LMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHhheeCC
Confidence 5555555544444444443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-13 Score=133.17 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H----------------HHHhhhhhHhhhh
Q 013324 59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F----------------GWAATQVAHMSMV 121 (445)
Q Consensus 59 ~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~----------------~~~~~~~~~~al~ 121 (445)
++.+++.++..+..++++++.|+++|++|||+.+++. .+.+.++...+ + +.+........++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~-~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLA-VVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhH
Confidence 4569999999999999999999999999999885544 44444444333 2 3333344444555
Q ss_pred hhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 013324 122 NCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 201 (445)
Q Consensus 122 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~ 201 (445)
.|+.+ ++.|+...+..+....+|..++..++...-. ...+||..+.+..+.+++..+. .+..||.+..-
T Consensus 168 sEiap-~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~---------~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L 236 (513)
T KOG0254|consen 168 SEIAP-AHIRGTLVSLYQLFITIGILLGYCINYGTSK---------VYAGWRIPLGLALIPAVILALG-MLFLPESPRWL 236 (513)
T ss_pred hhcCC-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc---------CCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHH
Confidence 67664 7789999999888888777776444333210 0148998888777777777666 55666643210
Q ss_pred -----cc---------cC--Ccc---hHH-----------------HHHHHHh--chH-HHHHHHHHHHHH-HHHHHHHH
Q 013324 202 -----GL---------RG--NSH---ARI-----------------SWAYWFK--KIL-YYQVALVYMLTR-LVVNVSQA 241 (445)
Q Consensus 202 -----~~---------~~--~~~---~~~-----------------~~~~~~~--~~~-~~~~~~~~~~~~-~~~~~~~~ 241 (445)
.+ .. +.+ ..+ .++++++ +++ .........+.+ .+.+....
T Consensus 237 ~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~ 316 (513)
T KOG0254|consen 237 IEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFY 316 (513)
T ss_pred HHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEe
Confidence 00 00 000 000 0111221 111 111222233333 34445555
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhcc---C-------c
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILP---M-------N 310 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~-------~ 310 (445)
|.+.+++. .|.+... .......++..+++..+... ++|++| |+.++.+...+.++..++.... . .
T Consensus 317 Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gR--r~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
T KOG0254|consen 317 YSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGR--RKLLLFGAAGMSICLVILAVVGVFALYYPNSSKG 392 (513)
T ss_pred ehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 66666554 4555331 22223334444455544443 456655 6677777777776666554321 0 1
Q ss_pred hhHHHHHHHHHHHHHHhH-hhhhHhhhcccccccccccchhHHhHHHHHHHHH
Q 013324 311 MSAFMYVLAIFVGIANAL-MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS 362 (445)
Q Consensus 311 ~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig 362 (445)
..++.+....+.-...+. ..+..+.+..+..|.+.++ ...++........
T Consensus 393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~--~~~s~~~~~n~~~ 443 (513)
T KOG0254|consen 393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRS--KGASLAVAVNWLW 443 (513)
T ss_pred hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHh--hhHHHHHHHHHHH
Confidence 122322222222222222 2345566778889999888 5555444444333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-12 Score=122.54 Aligned_cols=258 Identities=14% Similarity=0.042 Sum_probs=163.6
Q ss_pred HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc------ccchhhHHHHHHHHHHHH
Q 013324 109 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT------HADLENQYRWIAYSSIFI 182 (445)
Q Consensus 109 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~------~~~~~~g~~~~~~~~~~~ 182 (445)
+.+..++..++++.++.+ +|++.+..++.+.+..+|.+++|.++..++....... ...+...|++++.+.+.+
T Consensus 23 G~~~lq~~~n~~v~~~~~-~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~ 101 (310)
T TIGR01272 23 GLTILQVAANPYVSILGP-IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGA 101 (310)
T ss_pred hHHHHHhhHHHHHHHHCC-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 566677777788887775 6678888888899999999999999887764211000 000125789988866555
Q ss_pred HHHHHHHH-hcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccchhhh
Q 013324 183 GCCFVGIF-LSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQSAKA 259 (445)
Q Consensus 183 ~~i~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~ 259 (445)
.++..+.+ +...||.+.+++++..++.....++.+|+|+++...+..+++.....+...|.+.|+.+. .|+++...+
T Consensus 102 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~ 181 (310)
T TIGR01272 102 LAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA 181 (310)
T ss_pred HHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 44443333 333344222111111111111224567888888766666676667888899999999854 588888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcc
Q 013324 260 LVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQN 338 (445)
Q Consensus 260 ~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 338 (445)
........+.++|+++.+++ +|++. |+.+.++..+..+...+....+ +.+ ......+.|++.+..+|...+...
T Consensus 182 ~~~s~~~~~~~iGr~~~~~l~~r~g~--~~~l~~~~~l~~~~~~l~~~~~--~~~-~~~~~~l~g~~~s~i~P~~~s~a~ 256 (310)
T TIGR01272 182 HFTAYTWGGAMVGRFIGSAVMPMISQ--GRYLAFNAFLAVLLSIGAALTH--GYV-AMWFVLALGLFNSIMFPTIFSLAL 256 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHcC--CHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999888854 33333 5555566555555544333322 222 223455788999999998887776
Q ss_pred cccccccccchhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 339 VLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 339 ~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
+..|++ .+ .+.++. ....+|+++.|.+.+.+.+.
T Consensus 257 ~~~~~~-~~--~asai~-~~~~~Gg~i~P~l~G~lad~ 290 (310)
T TIGR01272 257 NALGRH-TS--QGSGIL-CLAIVGGAIVPLLQGSLADC 290 (310)
T ss_pred hhhhhh-hh--hhHHHH-HHHHhcchHHHHHHHHHHHh
Confidence 655543 34 344554 35568888898888877643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=123.90 Aligned_cols=335 Identities=12% Similarity=0.018 Sum_probs=199.6
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-C----CCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-G----LSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGS 97 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g----~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~ll~~~ 97 (445)
|..+....-.+-..+.++-+-..+..|++.. + ++.+++.-+.+.|...--++..+.|+++|| +|+||.. ..+.
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI-~lGa 99 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI-VLGA 99 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHH
Confidence 4444444445556666666667777777664 6 999999999999999888999999999999 7999984 4445
Q ss_pred HHHHHHHHHHH-------------------HHHhhhhhHhhhhhhcccC-ccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 013324 98 VLVAVSFSSVF-------------------GWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 98 i~~~~~~~~~~-------------------~~~~~~~~~~al~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 157 (445)
+...++-.... +.+.+-....+++.+..++ +.+|....+..+.+.++|+++++.+.+.+.
T Consensus 100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 55554433322 2223333455667777654 344666667777788889988888777764
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccc---cccccccccc--CCcch---------------------HH
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT---EEPRLKMGLR--GNSHA---------------------RI 211 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~---~e~~~~~~~~--~~~~~---------------------~~ 211 (445)
. ..||+..|...++-..+.++.++... ++....+++. ++... .+
T Consensus 180 ~----------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (498)
T COG3104 180 I----------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQN 249 (498)
T ss_pred H----------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 56788887765553333333332221 1111111000 00000 00
Q ss_pred ----------------HHHHHH------hchH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----chhhhHH
Q 013324 212 ----------------SWAYWF------KKIL-YY---QVALVYMLTRLVVNVSQAYLAFYVINDLRMG----QSAKALV 261 (445)
Q Consensus 212 ----------------~~~~~~------~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~ 261 (445)
.+.+.+ .+|+ .+ .+++...+++..+....+-+..|..+..+.+ ....++.
T Consensus 250 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~f 329 (498)
T COG3104 250 TFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWF 329 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHH
Confidence 001111 1121 11 2233344444444444444444443322211 1123455
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhh-----hHHHHHHHHHHHHHHHHHhhc---c-----CchhHHHHHHHHHHHHHHh
Q 013324 262 PAIIYICSFIVSILLQE-MAWTGQRL-----KAYYSAGGVLWVFCGAGILIL---P-----MNMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 262 ~~~~~~~~~ig~~l~~~-~~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~l~g~~~~ 327 (445)
.+...+.-++.+++..+ +.+..++. +.-+.+++.++.++++.+... . ..+.|+.+...+++++|.=
T Consensus 330 QslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL 409 (498)
T COG3104 330 QSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGEL 409 (498)
T ss_pred HhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 66666666666655544 45533331 334667777777777666543 1 1256777888899999999
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
+..|...++...+.|++-.+ ...+.+-+....|+.+++.+.+
T Consensus 410 ~iSpvGLs~~t~laP~~~~s--~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 410 FISPVGLSMVTKLAPPALKS--FIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HhCHHHHHHHHHhChHHHHH--HHHHHHHHHHHHHHHhhceecc
Confidence 99999999999999998888 7788888888788877776655
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=121.10 Aligned_cols=320 Identities=11% Similarity=0.056 Sum_probs=190.0
Q ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----------------
Q 013324 46 YLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF---------------- 108 (445)
Q Consensus 46 ~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~---------------- 108 (445)
.+.-|..++ | +...+-|+..+|.+.......+.=|+.||+|-|...++....-...+..=+.
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~ 144 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTH 144 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhH
Confidence 344455555 6 7777889999999999999999999999999988755544443333333222
Q ss_pred -HHHhhhhh--H----hhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHH--HHHHH
Q 013324 109 -GWAATQVA--H----MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW--IAYSS 179 (445)
Q Consensus 109 -~~~~~~~~--~----~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~--~~~~~ 179 (445)
+....... + .+-+++.-..++||..+......+..+|..++.++.+.+...- ...++..|.. .+...
T Consensus 145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~----~~~~~~~~~~~~~f~~~ 220 (480)
T KOG2563|consen 145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS----KDSEDNSWLFFTLFLGV 220 (480)
T ss_pred HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC----CCcchhHHHHHHHHHHH
Confidence 11111111 1 0112233335889999999988888889888887766665321 0112344544 34444
Q ss_pred HHHHHHHHHHHhcccccccc-cccc----cCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013324 180 IFIGCCFVGIFLSRTEEPRL-KMGL----RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG 254 (445)
Q Consensus 180 ~~~~~i~~~~~~~~~~e~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 254 (445)
..++.+.+.+..+..+|+++ ++.. .++.+..+..++.+||++|....+.+.+....++...+.+-.-+. .-|++
T Consensus 221 ~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~ 299 (480)
T KOG2563|consen 221 ECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYE 299 (480)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCC
Confidence 44554444444444444222 2111 122357788899999999988877776665555554433332222 23666
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHHHHHhHhhhh
Q 013324 255 QSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILIL--PMNMSAFMYVLAIFVGIANALMMVT 332 (445)
Q Consensus 255 ~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (445)
...+|.......++.++++.+.+.+.++.|++|+...+......++...+... .....+..+....+.|+......|.
T Consensus 300 ~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pi 379 (480)
T KOG2563|consen 300 GVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPI 379 (480)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCc
Confidence 66678888888888899999988764455555666555555544442222111 1223444455556677766666776
Q ss_pred HhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 333 GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 333 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
-.-+..|.+-+..+| +..|+.++..++-+.+-..+.+..
T Consensus 380 g~ElgvE~TyPv~E~--tSsGll~~~gq~f~~~~~~~~~~~ 418 (480)
T KOG2563|consen 380 GFELGVETTYPVAEG--TSSGLLNLSGQIFGVILVFIMGIL 418 (480)
T ss_pred ceeeeeeeccccCCc--ccceeEEeehhHHHHHHHHHHHHH
Confidence 666666666666666 567766665555544444444443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-11 Score=109.80 Aligned_cols=322 Identities=12% Similarity=0.013 Sum_probs=174.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH
Q 013324 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (445)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~ 107 (445)
++--+...+.++.+....+.+-..+. |.+..+..++...-.....+.+..+|..+||+||||.+.+.....+.......
T Consensus 82 ~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~ 161 (528)
T KOG0253|consen 82 VAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISG 161 (528)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhc
Confidence 34444555666777777777777777 99999999999999999999999999999999999976543332222221111
Q ss_pred H--------------HHHhhhhhHh-hhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHH
Q 013324 108 F--------------GWAATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 172 (445)
Q Consensus 108 ~--------------~~~~~~~~~~-al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~ 172 (445)
+ +.+....|.. ++..+..+ ..+|....-.. .++.+|.+....+...+.. ..||
T Consensus 162 ~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp-~~~r~~~~V~~-~~waig~v~ea~law~vm~----------~~gw 229 (528)
T KOG0253|consen 162 ASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLP-SSHRWLLTVMS-FFWAIGQVFEALLAWGVMS----------NFGW 229 (528)
T ss_pred CCCCeehhhHHHHHHhccCCCccHhHHHHHHhcc-CcCCCcchhHH-HHHHHHHHHHHHHHHHHHH----------hhhH
Confidence 1 2222334443 23344444 44565544443 6667788887777766653 4588
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccc-----cc------------c------------------CC-----------
Q 013324 173 RWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----GL------------R------------------GN----------- 206 (445)
Q Consensus 173 ~~~~~~~~~~~~i~~~~~~~~~~e~~~~~-----~~------------~------------------~~----------- 206 (445)
||..+....... .+..+.+.++|.++-. ++ + ++
T Consensus 230 r~~l~~~~~pl~-~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a 308 (528)
T KOG0253|consen 230 RYLLFTSSTPLM-FAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSA 308 (528)
T ss_pred HHHHHHHHhHHH-HHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcc
Confidence 887665553333 3333345566642100 00 0 00
Q ss_pred -cchHHHHHHHHhchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh-----------------cccchhhh--HHH
Q 013324 207 -SHARISWAYWFKKILYYQVA----LVYMLTRLVVNVSQAYLAFYVINDL-----------------RMGQSAKA--LVP 262 (445)
Q Consensus 207 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----------------g~~~~~~~--~~~ 262 (445)
++.+.....++. |.++... ...+...+.+++.........+... +-...... .=.
T Consensus 309 ~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdl 387 (528)
T KOG0253|consen 309 AKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDL 387 (528)
T ss_pred ccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHH
Confidence 000011111211 2222111 1222222333333333333332211 10100000 011
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccccc
Q 013324 263 AIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV 341 (445)
Q Consensus 263 ~~~~~~~~ig~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 341 (445)
.+..+..+-|.++.+. ++|++| |+.+...++++.+..+.+......+....+ .+..-+.....+...+.|..+..
T Consensus 388 litslaefPGlLIt~~iverlGR--KkTMal~l~~f~iflfll~~c~~rn~~tvl--lf~arafisg~fqvaYvYtPEVy 463 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERLGR--KKTMALSLILFGIFLFLLTTCKTRNAYTVL--LFTARAFISGAFQVAYVYTPEVY 463 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHhcCcchhHHH--HHHHHHHHhchheEEEEecCccc
Confidence 2223444555566665 366666 778888888777766666554422322211 12222333444556778888888
Q ss_pred ccccccchhHHhHHHHHHHHHHHHHHHHH
Q 013324 342 GEDLSGCAFVCGTLSFLDKMSCGIAVYVL 370 (445)
Q Consensus 342 ~~~~~g~~~~~~~~~~~~~ig~~i~~~l~ 370 (445)
|..-|+ +..|..+-+.++|+.+.|.+.
T Consensus 464 PTavRa--tgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 464 PTAVRA--TGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred chhhhh--cchhhhhhHHhhhhhhhhHHH
Confidence 887777 667777888899999999887
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-11 Score=120.52 Aligned_cols=298 Identities=13% Similarity=0.040 Sum_probs=163.5
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----------------HHHhhhhhH
Q 013324 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----------------GWAATQVAH 117 (445)
Q Consensus 54 ~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----------------~~~~~~~~~ 117 (445)
...+.....+..+++.+...++..++|.++||+|||++++....+.........+ +.+......
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence 3888899999999999999999999999999999999866544444444433332 111222233
Q ss_pred hhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccc
Q 013324 118 MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 197 (445)
Q Consensus 118 ~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 197 (445)
..++.|+.. +++|+.+..+ ......++..++..+..+. .+|||.+++..+...+..++ ++..+|.
T Consensus 193 ~~~~~E~~~-~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~------------~~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 193 FGLVAEIVS-PKQRGLALTL-GGFFFVGGLMLPAGAAYIT------------RDWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HhhheeecC-cchhhHHHHH-HHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 455567775 8889998888 5555555555554444442 38999998887777766655 3444453
Q ss_pred cccc------c-------c----c-CCcchH--------------------HHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 013324 198 RLKM------G-------L----R-GNSHAR--------------------ISWAYWFKKILYYQVALVYMLTRLVVNVS 239 (445)
Q Consensus 198 ~~~~------~-------~----~-~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (445)
++-. + + + .+.+.+ ..+.++++.+++....+...+.+.. ...
T Consensus 258 ~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-~~~ 336 (521)
T KOG0255|consen 258 PRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV-FSL 336 (521)
T ss_pred hHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH-HhH
Confidence 2100 0 0 0 000000 0122334444333333332222211 122
Q ss_pred HHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchh-HHHHH
Q 013324 240 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMS-AFMYV 317 (445)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 317 (445)
..+...+..+..|.+..... ...+..........+. +++.+| |.....+..+..++++...+...... +...+
T Consensus 337 ~y~gl~~~~~~lg~~~~~~~---~~~~~~~~p~~~~~~~~~~~~gR--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (521)
T KOG0255|consen 337 VYYGLSLNVSGLGGNIYLNF---TLSGLVELPAYFRNGLLLPEFGR--RPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWI 411 (521)
T ss_pred HHHhhhhhhhhcCchHHHHH---HHHHHHHhhHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 22223333333343332111 1111122222222222 233323 45556666666666666666543222 23344
Q ss_pred HHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 318 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 318 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
...+..++.+..+.....+..+..|...+. .+.+..+....+|..+++.+.-...
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~el~pt~~r~--~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 412 LPLLGKFFIGSAFNLIFLYSAELIPTVVRN--TAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555555566777777777777 7788889999999999988764443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-17 Score=161.53 Aligned_cols=298 Identities=14% Similarity=0.090 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-HH-------------------HHHhhhhhHh
Q 013324 59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-VF-------------------GWAATQVAHM 118 (445)
Q Consensus 59 ~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~-~~-------------------~~~~~~~~~~ 118 (445)
...+++.+...+...++.++.|.++||+|||+.+++... +..++..+ .+ +.+.......
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL-LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999999999998654333 33332222 11 1112223333
Q ss_pred hhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 013324 119 SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 198 (445)
Q Consensus 119 al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 198 (445)
.++.|..+ +++|++...+.+.+..+|.+++..++... ... .+.++||+.+.+..+..++..+.. ...||.+
T Consensus 125 ~~~~E~~~-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~------~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP 195 (451)
T PF00083_consen 125 IYISEIAP-PKHRGFLSSLFQLFWALGILLASLIGYIV-SYY------SDNWGWRILLIFGAIPSLLVLLLR-FFLPESP 195 (451)
T ss_pred cccccccc-ccccccccccccccccccccccccccccc-ccc------cccccccccccccccccccccccc-ccccccc
Confidence 45566664 77899999888888778877766555433 111 113579998877666665544433 4456642
Q ss_pred c--------cccc----c---------C----CcchH------HHHHHHHhchH----HHHHHHHHHHHHHHHHHHHHHH
Q 013324 199 L--------KMGL----R---------G----NSHAR------ISWAYWFKKIL----YYQVALVYMLTRLVVNVSQAYL 243 (445)
Q Consensus 199 ~--------~~~~----~---------~----~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 243 (445)
+ ++.+ + + +++.+ ..++++++++. .........+..........++
T Consensus 196 ~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 275 (451)
T PF00083_consen 196 RWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYY 275 (451)
T ss_pred ceecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence 1 0000 0 0 00000 12445566543 1111222222222222223344
Q ss_pred HHHHHhhhcccch-hhhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHh---hccCch----hHH
Q 013324 244 AFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGIL---ILPMNM----SAF 314 (445)
Q Consensus 244 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~ig~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~ 314 (445)
.+.+.+..+.+.. .... ...+...++.++... .+|++| |+.++.+...++++...+. ....+. .+.
T Consensus 276 ~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~GR--r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T PF00083_consen 276 SPSIFENAGISNSFLATL---ILGLVNFLGTLLAIFLIDRFGR--RKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL 350 (451)
T ss_pred cccccccccccccccccc---cccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence 4444455566655 1111 222333334333333 244444 5566666666665555443 111222 122
Q ss_pred HHHHHHHHHHHHh-HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 315 MYVLAIFVGIANA-LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 315 ~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.+....+..+..+ ...+..+.+..|..|.+.|+ ...++......+++.+++.+....
T Consensus 351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~--~~~~~~~~~~~i~~~i~~~~~~~~ 408 (451)
T PF00083_consen 351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS--TGIGLSYAVGRIGGFIIPFLFPYL 408 (451)
T ss_pred cceeeeeccccccccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 2222222222222 22345557778888888888 667766666777777666654443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=118.69 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=97.9
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHH
Q 013324 215 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSA 292 (445)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~ 292 (445)
+++.+++...+++...+...+.....+++--++++ .+-.+...|...+..-.+-++.-++.. |+.+|+ -+++..
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~---klI~kiGHv~v~~l 441 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSF---KLIEKIGHVNVMYL 441 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHH---HHHHHhcccceeee
Confidence 45666665444444444444555555555444554 344444444443333344444434444 444444 567778
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccccccccccc--chhHHh-HHHHHHHHHHHHHHHH
Q 013324 293 GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCG-TLSFLDKMSCGIAVYV 369 (445)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~-~~~~~~~ig~~i~~~l 369 (445)
++.+...-++.+.++. ++|..+..-++-|+..+..+..+.++.+...|++.+. ++..-+ ...++..+|+.+|+.+
T Consensus 442 gLa~~~~Rf~~~S~L~--n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~ 519 (618)
T KOG3762|consen 442 GLACNVGRFLYYSYLQ--NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV 519 (618)
T ss_pred hhhHHHHHHHHHHHhc--CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence 8888888877777766 8899999999999999999999999999888888877 222222 2345666777788777
Q ss_pred HHHcc
Q 013324 370 LQSYQ 374 (445)
Q Consensus 370 ~~~~~ 374 (445)
+..++
T Consensus 520 v~~fg 524 (618)
T KOG3762|consen 520 VERFG 524 (618)
T ss_pred heeeh
Confidence 77765
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.4e-11 Score=114.98 Aligned_cols=289 Identities=15% Similarity=0.103 Sum_probs=180.7
Q ss_pred HHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------HHHhhhhhHhhhhhhcccCccccchh
Q 013324 68 GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF-------------GWAATQVAHMSMVNCITLNSTSRVVL 134 (445)
Q Consensus 68 ~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~-------------~~~~~~~~~~al~~~~~~~~~~r~~~ 134 (445)
..+...+..|..|.++||||||.++.+.....+.-.....+ ++........+.++|.+. +++|...
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~-~~~R~~~ 149 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISS-EEERSSS 149 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccc-hhHHHHH
Confidence 36888899999999999999988754332222222222222 333444455667788775 6788888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccccc---------C
Q 013324 135 TSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---------G 205 (445)
Q Consensus 135 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~---------~ 205 (445)
.++.......+..+++.+++.+.. ..+....+.+..+..++..+...+.+||+..+++++ +
T Consensus 150 ~gll~~~~~~~~~~~p~~~~~~~~----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~ 219 (463)
T KOG2816|consen 150 IGLLSGTFGAGLVIGPALGGYLVK----------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPG 219 (463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH----------hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCC
Confidence 888887777777777777766653 245556666766777777777777788865433222 1
Q ss_pred ---CcchHHHHHHHHh---chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013324 206 ---NSHARISWAYWFK---KILYYQVALVYMLTRLVVN-VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE 278 (445)
Q Consensus 206 ---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~ 278 (445)
+.+..+.++...+ +|..+.+.+..++...... ...-..+.|....++.+..+.+.+.........++..+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~ 299 (463)
T KOG2816|consen 220 SLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLP 299 (463)
T ss_pred cccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222 3333333333322222111 11112355666778899888887777777777777766553
Q ss_pred -H-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHH
Q 013324 279 -M-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS 356 (445)
Q Consensus 279 -~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 356 (445)
+ ..+.+ |+.+..|+..-........+.. ..|+.+...++. ...+...+...+..+...+++++| .+.++.+
T Consensus 300 ~l~~~l~~--~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e~g--~v~~~is 372 (463)
T KOG2816|consen 300 LLSSILGE--KRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEEQG--KVFGIIS 372 (463)
T ss_pred HHHHHHhh--hhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHH-HhhcchhHHHHhHHHhhccccccc--chhhHHH
Confidence 3 22333 5578888888777777777744 667766554443 344445667777788888899999 8888888
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 013324 357 FLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 357 ~~~~ig~~i~~~l~~~~~ 374 (445)
....+.+.+++.+.+.+.
T Consensus 373 ~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 373 GIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHHHHhhhhhHHHHHHHH
Confidence 888888888887776553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.7e-12 Score=109.45 Aligned_cols=332 Identities=9% Similarity=0.006 Sum_probs=189.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHHHHHHHHHHHHH---
Q 013324 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVF--- 108 (445)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~ll~~~i~~~~~~~~~~--- 108 (445)
.|++.++.-.....-..+-.|.+++.+...++.++|...+.+...+.|++.|| +|-|-.-++...+.+..-.....
T Consensus 53 gfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi 132 (459)
T KOG4686|consen 53 GFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI 132 (459)
T ss_pred cccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH
Confidence 33333333333333344445568888999999999999999999999999998 66543322222222211111110
Q ss_pred ---HHH-------------hhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccchhh
Q 013324 109 ---GWA-------------ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT--HADLEN 170 (445)
Q Consensus 109 ---~~~-------------~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~~~ 170 (445)
.|. ...+..+.+...+. +.+|-+.+.+++....-+|..+-..+.+++.+..+..- .+....
T Consensus 133 ~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wF-KGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~L 211 (459)
T KOG4686|consen 133 SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWF-KGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLL 211 (459)
T ss_pred HHHHHHHHhhheeeccCchhhhhhhcceeEEEe-cCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHH
Confidence 111 22233344444444 36778888888888778887766566666665433211 001112
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhcccccccccc---ccc---CCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 171 QYRWIA-YSSIFIGCCFVGIFLSRTEEPRLKM---GLR---GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL 243 (445)
Q Consensus 171 g~~~~~-~~~~~~~~i~~~~~~~~~~e~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (445)
|....+ .......++..... ...|++.++ .++ .++...++.+ --.+++|.+.++..++.....-+...-
T Consensus 212 G~~l~~~~~tc~~slical~l--g~~D~rAerilh~e~g~~Ge~pkLtdv~--~f~ppfw~~~iicv~yyva~fPFi~lg 287 (459)
T KOG4686|consen 212 GLWLCFEVKTCKQSLICALSL--GLSDDRAERILHLEEGFLGEEPKLTDVN--TFYPPFWVLVIICVLYYVAWFPFITLG 287 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHhhhcCcccCCccccccc--ccCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 211111 11111222221111 111211110 111 1111111100 014678988888888888888888889
Q ss_pred HHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHH--HHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 013324 244 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYS--AGGVLWVFCGAGILILPMNMSAFMYVLAI 320 (445)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (445)
|.++++..|+|+..++.+.+.....+.+.+++.+. +.||. |+... .+.+....+=..+++ +.+--+..+.
T Consensus 288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~---i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy~~m~ 360 (459)
T KOG4686|consen 288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGA---ISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPYTSMT 360 (459)
T ss_pred HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHH---hHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHHHHHH
Confidence 99999999999988776666554445555555553 44544 33222 222222223233333 2222345667
Q ss_pred HHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCC
Q 013324 321 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP 378 (445)
Q Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~ 378 (445)
+.|+...+.....+.+++..+|+++-| +++|+..-.+++|-++.+.+.+.+.+..+
T Consensus 361 ~lGLsysllAcslWP~va~~vpE~qLG--Taygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 361 FLGLSYSLLACSLWPCVASLVPEEQLG--TAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHhhhHHHHHHHHhhhhhhhCCHHHhc--chHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 888888887777788888889999999 99999999999999999998888765433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=118.42 Aligned_cols=350 Identities=10% Similarity=0.034 Sum_probs=183.9
Q ss_pred CCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCC-chHHHH
Q 013324 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH-FKIWHG 94 (445)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Gr-rr~~ll 94 (445)
+++-+||..+.-.+-++....-.+...+-.=+|++++ +.+.+..|++++...++.++..|++|+.+.|.|+ |||++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli- 106 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI- 106 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH-
Confidence 4456677777777777777776666666677888884 8888999999999999999999999999999885 77854
Q ss_pred HHHHHHHHHHHHH-H-------------------HHHhhhh-hHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHH
Q 013324 95 AGSVLVAVSFSSV-F-------------------GWAATQV-AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 153 (445)
Q Consensus 95 ~~~i~~~~~~~~~-~-------------------~~~~~~~-~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 153 (445)
.+.+...++..+- . +.+..+. ..-+.+++-+ ..++|.++.+....+..+|.++|+.+.
T Consensus 107 ~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s-~~~dR~rA~a~~~~~~vlg~ilGp~~q 185 (488)
T KOG2325|consen 107 VSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADAS-TVEDRPRAFAATSGGFVLGIILGPTIQ 185 (488)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhcc-CccchHHHHHHhhhHHHHHHHHhHHHH
Confidence 4555555554332 1 1111111 1123334433 367788888887777788888888776
Q ss_pred HHHHHhhccccccch---hhHHHHHHHHHHHHHHHHHHHHhcccccccccccccC--Cc-chHHHHHHHHhchH--HH--
Q 013324 154 FIVFSVSTAKTHADL---ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NS-HARISWAYWFKKIL--YY-- 223 (445)
Q Consensus 154 ~~l~~~~~~~~~~~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~~-~~~~~~~~~~~~~~--~~-- 223 (445)
..+......+-.-.+ -..+-.+.++.+++.++..++..+..||..+...+++ ++ +.+.+ ++-.++++ +.
T Consensus 186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~ 264 (488)
T KOG2325|consen 186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSD-IEKVKKPKLDWVAV 264 (488)
T ss_pred HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccc-hhhhccCChhHHHH
Confidence 555443211100000 0112233445555566665555566677544321111 11 01111 11122221 11
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHHHHHHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHH
Q 013324 224 -QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK----ALVPAIIYICSFIVSILLQEM--AWTGQRLKAYYSAGGVL 296 (445)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~ig~~l~~~~--~~~~~r~~~~~~~~~~~ 296 (445)
...+..+..........+..+.+.....+.+..++ +....+.++.++.-.+..... +++.+ |+.+..+...
T Consensus 265 ~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~--r~~~~~g~l~ 342 (488)
T KOG2325|consen 265 LVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDK--RRIILLGFLI 342 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc--ceeeeehHHH
Confidence 12222233333333334445555555555554443 333333232222222222221 22222 3333344333
Q ss_pred HHHHHHHHhhcc---C------c--------------------hhHHHHH-HHHHHHHHHhHhhhhHhhhcccccccccc
Q 013324 297 WVFCGAGILILP---M------N--------------------MSAFMYV-LAIFVGIANALMMVTGISMQNVLVGEDLS 346 (445)
Q Consensus 297 ~~~~~~~~~~~~---~------~--------------------~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
............ . + +++..++ ..+++|.+.........+.-++..+++++
T Consensus 343 ~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q 422 (488)
T KOG2325|consen 343 FFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQ 422 (488)
T ss_pred HHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccc
Confidence 333322222110 0 0 0111111 22344555544444555666677788888
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 347 GCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 347 g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
| +..+++++....+..+++.+....+
T Consensus 423 ~--~~qg~~~~~~s~~~~~~~~~~t~~~ 448 (488)
T KOG2325|consen 423 G--TMQGVFSISGSIARVVGPIFSTAIF 448 (488)
T ss_pred c--ceeEEEEeccchhhhhhHHHHhhhH
Confidence 8 7888888888888888877665554
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=119.86 Aligned_cols=131 Identities=20% Similarity=0.230 Sum_probs=110.7
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc----cCCchHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVL 99 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr----~Grrr~~ll~~~i~ 99 (445)
++.+..+.-.++.++++..-.+|+++|..++|++....+.+.....+...+.||+.|..+|| ||||||++..+...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 66777888889999999999999999999999999999999999999999999999999996 99999999888887
Q ss_pred HHHHHHHHH----------------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHH
Q 013324 100 VAVSFSSVF----------------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 145 (445)
Q Consensus 100 ~~~~~~~~~----------------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g 145 (445)
..++..++. .......|.-++..|+..+++|+.+++++...+..+|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 777766543 1124556778888888876666555888888888889
Q ss_pred HHHHHHHHH
Q 013324 146 NLSLYAIAF 154 (445)
Q Consensus 146 ~~~~~~~~~ 154 (445)
+.++..++.
T Consensus 192 nvLGY~~g~ 200 (498)
T KOG0637|consen 192 NVLGYALGS 200 (498)
T ss_pred ceeeeeccc
Confidence 988877664
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-09 Score=98.78 Aligned_cols=240 Identities=15% Similarity=0.034 Sum_probs=127.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~ 106 (445)
..|.+. .....+-.+|+-..+++.|.+..+++.+...+.....+..++.|.++||+||||.-++.+.+- ..+.+.
T Consensus 41 ~vY~La----~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily-~~scl~ 115 (354)
T PF05631_consen 41 LVYLLA----MAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILY-SLSCLT 115 (354)
T ss_pred HHHHHH----HHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHH
Confidence 345554 344455666665666677999999999999999999999999999999999999865544433 333222
Q ss_pred HH----------------HHHhhhhhHhhhhhhcccCcc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Q 013324 107 VF----------------GWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 169 (445)
Q Consensus 107 ~~----------------~~~~~~~~~~al~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 169 (445)
-- ..+.......++......+.+ ++............+++-+..+..+.+.++.... ..
T Consensus 116 k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~----~~ 191 (354)
T PF05631_consen 116 KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW----FG 191 (354)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH----hC
Confidence 11 122233334444433322111 1111111111111122222223333333322100 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccccccc--cCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 013324 170 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV-SQAYLAFY 246 (445)
Q Consensus 170 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 246 (445)
.|-..+|....++.++..++.....+|...++.+ +..++.++.++.+++||+.+.+.+...++-..++. ...|.|..
T Consensus 192 ~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL 271 (354)
T PF05631_consen 192 FGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPAL 271 (354)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeecee
Confidence 1224455444444444444443444563322111 12234556667788889988777766665554443 33445554
Q ss_pred HHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013324 247 VINDLRMGQSAKALVPAIIYICSFIVSILLQE 278 (445)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~ 278 (445)
-.++.+ .-.|++....+++.++|+.+.++
T Consensus 272 ~~~~~~---~P~GlIFssFM~a~MlGS~lf~~ 300 (354)
T PF05631_consen 272 DPDDEE---LPLGLIFSSFMVAMMLGSSLFSR 300 (354)
T ss_pred cCCCCC---CCchHHHHHHHHHHHHHHHHHHH
Confidence 422111 22578888888889999988764
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-09 Score=104.37 Aligned_cols=168 Identities=12% Similarity=0.014 Sum_probs=107.1
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
+.++.+...+..+...........++|.|+.|.|.++.+.|.+.+++.+...++.++.|+++||+|||+..+. +.....
T Consensus 203 ~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~-~~~l~~ 281 (393)
T PRK09705 203 FTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLML-ALVLQL 281 (393)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHHH
Confidence 3444444444444455566677788999998889999999999999999999999999999999999887443 333322
Q ss_pred HHHHHH-H---------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013324 102 VSFSSV-F---------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 165 (445)
Q Consensus 102 ~~~~~~-~---------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 165 (445)
.+..+. + +.............+..+++++|++..+..+....++..+++.+.+.+.+..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---- 357 (393)
T PRK09705 282 VGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---- 357 (393)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 222211 1 01111111222333444445678888888877777788888888877765321
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 013324 166 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 199 (445)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 199 (445)
+|+..+.+.++.+++..+......+|++.
T Consensus 358 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 358 -----NYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 24555555555555555554555666543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=107.48 Aligned_cols=166 Identities=14% Similarity=0.003 Sum_probs=111.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s--------~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
.+.+..+...........+++.|.++.|.+ .+..|.+.++..+...+.+++.|+++||+||||.+++ +.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~-~~~~ 290 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLL-SLVA 290 (418)
T ss_pred eHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHH
Confidence 344555555555556667888888887644 3677999999999999999999999999999987543 3333
Q ss_pred HHHHHHHHH---------------------HHHhhhhhHhhhhhhcccCccccchhhhHHH-HHHHHHHHHHHHHHHHHH
Q 013324 100 VAVSFSSVF---------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 100 ~~~~~~~~~---------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~ 157 (445)
..+...... ++.........++.+..+ +++|++..++.+ ....+|..+++.+++.+.
T Consensus 291 ~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p-~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 291 WALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVP-VHIRASAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333211100 112222333344556554 778999999986 566789999999988887
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 199 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 199 (445)
+..+.. ...||++.+.+.+++.++..++..+..||++.
T Consensus 370 ~~~g~~----~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 370 EKMFAY----GTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHhccc----cCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 643210 11468988887777777777777777777543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-09 Score=102.11 Aligned_cols=148 Identities=5% Similarity=-0.002 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHH
Q 013324 220 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLW 297 (445)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~ 297 (445)
|+++.+.+..++...+.+....++|.|++++.|.+..+.++......+...++.+..|++ .||+ |+.+..+..+.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l---~Dr~g~k~~~~~~~~~~ 83 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGIL---ADKFDKKRYMLLAITAF 83 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCcchhHHHHHHHH
Confidence 345666667777777888888999999999999999999988888777788888777753 4444 66677777776
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 298 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.++.+.+.+.+ +.+..++...+.+.+.+...+.......+..++++++ ...++.+....+|..+++.+.+.+.
T Consensus 84 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 84 ASGFIAIPLVN--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKT--KIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555533 5555555555666666666666677777777888888 7778888888888888877766543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-11 Score=124.08 Aligned_cols=249 Identities=10% Similarity=0.051 Sum_probs=0.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 013324 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (445)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~ 108 (445)
+.+..+......+.+...++..-++++++.++.|++.+.+-+...+..++..++++| |+|..|+-.+.++++++.++..
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHh
Confidence 333433333333344444555555679999999999999999999999999999998 4667788888887777765542
Q ss_pred ---------------------------H------------------------------------HHhhhhhHhhhhh---
Q 013324 109 ---------------------------G------------------------------------WAATQVAHMSMVN--- 122 (445)
Q Consensus 109 ---------------------------~------------------------------------~~~~~~~~~al~~--- 122 (445)
. .+....|...+-.
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 0 0011222222222
Q ss_pred hcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc--------hhh----HHHHHHHHHHHHHHHHHHHH
Q 013324 123 CITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD--------LEN----QYRWIAYSSIFIGCCFVGIF 190 (445)
Q Consensus 123 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~~~----g~~~~~~~~~~~~~i~~~~~ 190 (445)
|...++++-..+.++......+|..+|.++++.+...+......+ .+. .|..-|++.+.+.++..+..
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222234555667777778888888888888877776543222111 011 24444555555555555444
Q ss_pred hccccccccc---------cc-c------c---CC----------cchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 013324 191 LSRTEEPRLK---------MG-L------R---GN----------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQA 241 (445)
Q Consensus 191 ~~~~~e~~~~---------~~-~------~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (445)
..+.|+-+.. ++ + + ++ ++....++++++||.+....+...+......++.+
T Consensus 247 ~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~t 326 (539)
T PF03137_consen 247 FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFAT 326 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4333321111 00 0 0 00 11223457788999998888888888888889999
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHH-HHHHHHHHHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYI-CSFIVSILLQE 278 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~ig~~l~~~ 278 (445)
|.|.|++.+++.++..++++.....+ ++.+|.++.|.
T Consensus 327 F~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ 364 (539)
T PF03137_consen 327 FLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGY 364 (539)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEE
Confidence 99999999999998887766555433 34455555555
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-09 Score=105.58 Aligned_cols=165 Identities=7% Similarity=-0.059 Sum_probs=99.6
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
+..+...+..+...........++|.|+++. |.++.+.++..++..+...++.++.|+++||+||||..+....+....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII 337 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3445555555555555555667899999886 999999999999999999999999999999999988644322221111
Q ss_pred HHHHHH--------------HHH-hhhhhH---hhhhhhcccCccccchhhhHHHHHHHH-HHHHHHHHHHHHHH-hhcc
Q 013324 103 SFSSVF--------------GWA-ATQVAH---MSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAFIVFS-VSTA 162 (445)
Q Consensus 103 ~~~~~~--------------~~~-~~~~~~---~al~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~-~~~~ 162 (445)
...... ..+ ....+. .....+..+ +++|+.+.++.+....+ |..+++.+.+.+.+ ....
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p-~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g 416 (467)
T PRK09556 338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVP-KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNG 416 (467)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccc
Confidence 111110 111 111111 133345554 77899999988776664 55666666666654 0000
Q ss_pred c-cccchhhHHHHHHHHHHHHHHHHHHH
Q 013324 163 K-THADLENQYRWIAYSSIFIGCCFVGI 189 (445)
Q Consensus 163 ~-~~~~~~~g~~~~~~~~~~~~~i~~~~ 189 (445)
. .......+|+..|.+..+..++..+.
T Consensus 417 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 444 (467)
T PRK09556 417 TPIFGYTLTGWAGTFAALDIAAIGCICL 444 (467)
T ss_pred cccccccccChHHHHHHHHHHHHHHHHH
Confidence 0 00001346888887765555554433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-08 Score=98.46 Aligned_cols=145 Identities=13% Similarity=0.059 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH--------
Q 013324 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF-------- 108 (445)
Q Consensus 38 ~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~-------- 108 (445)
........++|.|+++. |.++.+.|.+.++..+...++.++.|+++||+||||.... +............
T Consensus 230 ~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T PRK15011 230 GTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRV-AAVAGVCFYAGMLMAHSPAIL 308 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHhhHHHH
Confidence 33444556788898876 9999999999888888888889999999999999986443 3322222211111
Q ss_pred ---------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHH
Q 013324 109 ---------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSS 179 (445)
Q Consensus 109 ---------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~ 179 (445)
.++...........+.. +++|+++.++.+....+|..+++.+++.+.+ ..+|+..+.+.
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~--p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------~~g~~~~~~~~ 376 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLM--PGQAGSATTLYTNTSRVGWIIAGSLAGIVAE----------IWNYHAVFWFA 376 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHH
Confidence 01111111223334444 4568888888877788888898888887753 45788888776
Q ss_pred HHHHHHHHHHHhccccc
Q 013324 180 IFIGCCFVGIFLSRTEE 196 (445)
Q Consensus 180 ~~~~~i~~~~~~~~~~e 196 (445)
+++.++..+..+ ..||
T Consensus 377 ~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 377 LVMIIATLFCLL-RIKD 392 (393)
T ss_pred HHHHHHHHHHHH-hhcC
Confidence 666665554443 3344
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-09 Score=103.87 Aligned_cols=161 Identities=10% Similarity=0.018 Sum_probs=110.9
Q ss_pred hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhh
Q 013324 209 ARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLK 287 (445)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~ 287 (445)
...+++.+.|||.++......++............|.+.++ .+.++.+.++......++.++++++.+++ +|+.+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~--~ 82 (417)
T PRK10489 6 WLLDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDR--K 82 (417)
T ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCC--c
Confidence 34555666789988887777777777777777778877765 56688888888888888888888888854 33333 4
Q ss_pred HHHHHHHHHHHHHHHHHh---hccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHH
Q 013324 288 AYYSAGGVLWVFCGAGIL---ILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCG 364 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~ 364 (445)
+.+..+..+.+++..... +...++.+..++..++.|++.+...+...++..+..++++++ .+.++.+....+|..
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 160 (417)
T PRK10489 83 KLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLM--QAGAITMLTVRLGSV 160 (417)
T ss_pred eEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHH--HHHHHHHHHHhHHHH
Confidence 445555444444433322 122345566666777888888877777777788888888888 677777777777777
Q ss_pred HHHHHHHHcc
Q 013324 365 IAVYVLQSYQ 374 (445)
Q Consensus 365 i~~~l~~~~~ 374 (445)
+|+.+.+.+.
T Consensus 161 ~g~~l~g~l~ 170 (417)
T PRK10489 161 ISPALGGLLI 170 (417)
T ss_pred hHHHHHHHHH
Confidence 7777665543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.1e-09 Score=101.25 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH--------
Q 013324 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF-------- 108 (445)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~-------- 108 (445)
.........++|.|.++.|.++++.|.+.+...+...+++++.|++.||+|||+... .+.....++.....
T Consensus 213 ~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 291 (381)
T PRK03633 213 GIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLR-VQVFVVILGSIAMLSQAAMAPA 291 (381)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHH-HHHHHHHHHHHHHhhhHHHHHH
Confidence 344555667889999888999999999999999999999999999999999988643 22222222211110
Q ss_pred ------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Q 013324 109 ------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI 182 (445)
Q Consensus 109 ------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~ 182 (445)
+.........+.+.+..+ +++++...+.......+|..+++.+++.+.+ ..+|++.+.+.+.+
T Consensus 292 ~~l~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~----------~~g~~~~f~~~~~~ 360 (381)
T PRK03633 292 LFILGAAGFTLYPVAMAWACEKVE-HHELVAMNQALLLSYTVGSLLGPSFTAMLMQ----------NYSDNLLFIMIASV 360 (381)
T ss_pred HHHHHHHHHhHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhCccHHHHHHHHH
Confidence 111122223343444443 4455556666666677888888888887753 45678887777666
Q ss_pred HHHHHHHH
Q 013324 183 GCCFVGIF 190 (445)
Q Consensus 183 ~~i~~~~~ 190 (445)
.++..+..
T Consensus 361 ~l~~~~~~ 368 (381)
T PRK03633 361 SFIYLLML 368 (381)
T ss_pred HHHHHHHH
Confidence 66554444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=103.04 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=101.1
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~ 103 (445)
++.+.+.+..+...........+.+.|.++.|.++.+.+.+.++..+...++.++.|+++||+|||+...+ +.+....+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~-~~~~~~~~ 283 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSI-VFGISAVG 283 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHH
Confidence 33444444444444444555566777877789999999999999999999999999999999999887433 33333332
Q ss_pred HHHHH-------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 104 FSSVF-------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 104 ~~~~~-------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
..... .++.......++..|..+ +++|++..++.+....+|..+++.+.+.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------ 356 (377)
T TIGR00890 284 MAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFG-PANSAANYGFLYTAKAVAGIFGGLIASHALT------ 356 (377)
T ss_pred HHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 22211 111111222344556554 6789999999988888888888877777653
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCF 186 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~ 186 (445)
..||++.+.+.+++.++.
T Consensus 357 ----~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 357 ----EIGFEYTFIVTGAFALTS 374 (377)
T ss_pred ----hhchhhHHHHHHHHHHHh
Confidence 467888887766655543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=102.68 Aligned_cols=226 Identities=10% Similarity=0.043 Sum_probs=154.7
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-----------------------
Q 013324 52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----------------------- 108 (445)
Q Consensus 52 ~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----------------------- 108 (445)
++++++.++.|++.+.+-+...+...+..+.+-|. +|..|+-.+.+.++++.++..
T Consensus 125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 34599999999999999999999999999999996 445568778877777766543
Q ss_pred ----------------------H--------------------HHhhhhhHhhhhh---hcccCccccchhhhHHHHHHH
Q 013324 109 ----------------------G--------------------WAATQVAHMSMVN---CITLNSTSRVVLTSCRNAFTM 143 (445)
Q Consensus 109 ----------------------~--------------------~~~~~~~~~al~~---~~~~~~~~r~~~~~~~~~~~~ 143 (445)
. .+....|...+-. |....+++-..+.++......
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 0 0011122222221 222234455677888888888
Q ss_pred HHHHHHHHHHHHHHHhhcccc-------ccchh--hHHHHHHHHHHHHHHHHHHHHhccccccccccc----------cc
Q 013324 144 VANLSLYAIAFIVFSVSTAKT-------HADLE--NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----------LR 204 (445)
Q Consensus 144 ~g~~~~~~~~~~l~~~~~~~~-------~~~~~--~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~----------~~ 204 (445)
+|.++|.+++..+..++...+ ..|++ -.|..-|++.+.+.++..+..+++.||.++..+ ++
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~ 363 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKT 363 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhccccc
Confidence 999999998888887664431 11111 236666788888887777777776665432110 00
Q ss_pred ------CC-------cchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHH-
Q 013324 205 ------GN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF- 270 (445)
Q Consensus 205 ------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 270 (445)
.+ +++...++++++||.+....+...+......++.+|+|.|+++++|.++..+.++.....+...
T Consensus 364 ~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~ 443 (735)
T KOG3626|consen 364 ESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAA 443 (735)
T ss_pred ccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhh
Confidence 00 1234456788999999999999999999999999999999999999999887777655544444
Q ss_pred HHHHHHHH
Q 013324 271 IVSILLQE 278 (445)
Q Consensus 271 ig~~l~~~ 278 (445)
+|.++.|.
T Consensus 444 ~Gi~lGG~ 451 (735)
T KOG3626|consen 444 VGIFLGGL 451 (735)
T ss_pred hhhhccce
Confidence 34445554
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-08 Score=99.51 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH---H---
Q 013324 36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV---F--- 108 (445)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~---~--- 108 (445)
..........++|.|+++. |.+..+.+.......+...++.++.|+++||+|||+.++....+....+..+. .
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV 341 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455566677899999776 99998888888888888999999999999999999875443322221111100 0
Q ss_pred -------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 013324 109 -------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI 175 (445)
Q Consensus 109 -------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 175 (445)
.+...........++..+ ++.|+...+..+.....++.+++.+.+.+... ..+|+..
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p-~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---------~~~~~~~ 411 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFP-THIRYSALAAAFNISVLVAGLTPTLAAWLVES---------TQNLMMP 411 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCchHH
Confidence 011111223344556654 77898877753333333444555555444321 1235555
Q ss_pred HHHHHHHHHHHHHHHhcccccccc
Q 013324 176 AYSSIFIGCCFVGIFLSRTEEPRL 199 (445)
Q Consensus 176 ~~~~~~~~~i~~~~~~~~~~e~~~ 199 (445)
+....+.+++..+..+ ..||++.
T Consensus 412 ~~~~~~~~~i~~~~~~-~~pes~~ 434 (490)
T PRK10642 412 AYYLMVVAVIGLITGV-TMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHHHH-HhccccC
Confidence 4444444444444333 3477543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-08 Score=94.42 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 013324 228 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI 306 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~ 306 (445)
..++...........+|.++.++.|.+..+.++......++..++.++.+++ +|+++ |+.+..+.++.+++.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGR--RRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-H--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--eeeEeehhhhhhhHHHHhhh
Confidence 3444555555566677767788889999999988888888888888888864 44333 66778888877777444443
Q ss_pred ccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 307 LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 307 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
. ++.+..++..++.|++.+...+....+..+..|+++++ ...+..+....+|..+++.+.+.+..
T Consensus 82 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~~l~~ 146 (352)
T PF07690_consen 82 A--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERG--RAFGILSAGFSLGSILGPLLGGFLIS 146 (352)
T ss_dssp H--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHH--HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred h--hhHHHHhhhccccccccccccccccccccccchhhhhh--hccccccchhhhhhhcccchhhhhhh
Confidence 2 35557778888999999999999999999999998888 88899999999999999888887763
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-08 Score=95.93 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHH
Q 013324 223 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFC 300 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~ 300 (445)
+......++...+.+....+.+.|++++.|.++.+.++......+...+.+++.+++ .||+ |+.+..+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l---~dr~g~k~~l~~~~~~~~~~ 89 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAI---ADRFGAKPMIVTGMLMRAAG 89 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHH---HHHhCchHHHHHHHHHHHHH
Confidence 344455566666777788899999999999999988888877777777777777753 4444 77788888887777
Q ss_pred HHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 301 GAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+...+. ++.|.+++..++.|++.+...+...++..+..|++++| .+.|..+....+|..+|+.+.+.+.
T Consensus 90 ~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 90 FATMAIA--HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRG--RFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666553 36677777778889988888887778888888888888 8888888888888888887777664
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-06 Score=82.36 Aligned_cols=310 Identities=12% Similarity=-0.009 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHh--CCCHHHHH-HHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-HH--------
Q 013324 41 ACWFTYLLLFLTDI--GLSPRGAA-AVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-VF-------- 108 (445)
Q Consensus 41 ~~~~~~l~~~~~~~--g~s~~~~g-~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~-~~-------- 108 (445)
-..-+|+..|+++. |++..++- -+.-+.+-.......+...+.|..|-|.+ ++.+.+...+...+ .+
T Consensus 20 rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpv-iil~~~~~i~t~~lll~~~sv~~mq 98 (412)
T PF01770_consen 20 RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPV-IILQALSYIITWLLLLFGTSVLAMQ 98 (412)
T ss_pred CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHCcHHHHH
Confidence 34447888898874 99988774 45556666677788899999999976554 55555544444333 23
Q ss_pred ----HHH---hhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 013324 109 ----GWA---ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF 181 (445)
Q Consensus 109 ----~~~---~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~ 181 (445)
.|+ +..+.+.+.+-... |+++-.++.+........|-.++.+++..+... ....++....+...
T Consensus 99 ~~q~~yg~~~a~evay~sYiys~v-~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~--------~~~sy~~L~~isl~ 169 (412)
T PF01770_consen 99 LMQFFYGLATAAEVAYYSYIYSVV-DKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF--------GGVSYFQLNYISLA 169 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHheeec-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHH
Confidence 232 34445555443333 355666778887787778888888888877653 12344444333322
Q ss_pred HHHHHHHHHhccc---------ccccc---------cc--c--ccC----------Ccc-------hHHHHHHHHhchHH
Q 013324 182 IGCCFVGIFLSRT---------EEPRL---------KM--G--LRG----------NSH-------ARISWAYWFKKILY 222 (445)
Q Consensus 182 ~~~i~~~~~~~~~---------~e~~~---------~~--~--~~~----------~~~-------~~~~~~~~~~~~~~ 222 (445)
...+.+++.++.. |.++. ++ + ++. +.. ...++++..+||..
T Consensus 170 ~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~l 249 (412)
T PF01770_consen 170 SVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRL 249 (412)
T ss_pred HHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchH
Confidence 2222222221111 10000 00 0 000 001 11234445566765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHH
Q 013324 223 YQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYY-SAGGVLWVF 299 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~-~~~~~~~~~ 299 (445)
+.-.+-..+...++.....|.-..-.+. .+-.....|.+-....+.+.++++..+.++...++..... ....++.+.
T Consensus 250 l~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~ 329 (412)
T PF01770_consen 250 LLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAG 329 (412)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHH
Confidence 5444444444444444443333333222 1333345566666666666666777776533344333222 222222232
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHH
Q 013324 300 CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCG 364 (445)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~ 364 (445)
..+.+.. .++.|...+..++++.......+.+..-++....++.-| ..+|++++...+-+.
T Consensus 330 ~L~lm~~--t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~ya--LVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 330 LLFLMSF--TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYA--LVFGINTFVALVLQT 390 (412)
T ss_pred HHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccee--eeeeeHHHHHHHHHH
Confidence 3233323 458898888888888877777766665566656677777 899998886655443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-08 Score=96.52 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=101.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH-
Q 013324 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF- 104 (445)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~- 104 (445)
.+...+..+...........++|.|.++.|.++.+.+.+.+...+...++.++.|+++||+||||+....+.+...++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~ 303 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTL 303 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 3444455555555566667789999988899999999999999999999999999999999998864322211111110
Q ss_pred HH-------------H--H--HHH---hhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 105 SS-------------V--F--GWA---ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 105 ~~-------------~--~--~~~---~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
.+ . + .++ ....|......+. ++++|++..++.+....+|..+++.+.+.+.+
T Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~------ 375 (402)
T TIGR00897 304 ALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTL--APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG------ 375 (402)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 00 0 0 111 1122333444443 25689999999988888898888888877764
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIF 190 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~ 190 (445)
..||...+.+.+++.++..++.
T Consensus 376 ----~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 376 ----FFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred ----hcchHHHHHHHHHHHHHHHHHH
Confidence 3567777776666655554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=98.07 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH------
Q 013324 35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------ 108 (445)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------ 108 (445)
...........++|.|+++.|.++.+.|.+.+...+...++.++.|+++||+||||.... +.+....+.....
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 309 (406)
T PRK11551 231 FTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLL-IYAGILASLAALAAAPSFA 309 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhcCcHH
Confidence 333444555667899999889999999999999999999999999999999999887443 2222222221111
Q ss_pred -----------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013324 109 -----------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 109 -----------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 158 (445)
..........++..+..+ +++|++..++.+....+|..+++.+.+.+.+
T Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 310 GMLLAGFAAGLFVVGGQSVLYALAPLFYP-TQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcc-hhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 111122233445566664 7789999999988888888888888877753
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=99.05 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccchhhhHHHHHHHHHHHHHHHHHHHH-HH-hhhhhhHHHHHHHHH
Q 013324 221 LYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSAGGVL 296 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~-~~~r~~~~~~~~~~~ 296 (445)
.++.+.+..++...+++....++|.|++++ +|.+..+.+.......++..++.++.|++ +| +++ |+.+..+..+
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~--~~~l~~~~~~ 88 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT--KKTMVLGGIV 88 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcch--HHHHHHHHHH
Confidence 355555666677788888899999999887 89999888988888888888888888864 33 233 7778888888
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccccccccc---ccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 297 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL---SGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.+++...+.+.+ +.+...+...+.|++.|...+...++..+.+++++ ++ .++++.+...++|..+|+.+.+.+
T Consensus 89 ~~~g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~~~~niG~~ig~~l~g~l 164 (475)
T TIGR00924 89 LMLGHFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRD--GGFTLFYMSINIGSFISPLLAGVI 164 (475)
T ss_pred HHHHHHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccccc--ceehhHHHHHHHHHHHHHHHHHHH
Confidence 887776666533 45555566677889988877777777666655432 44 567777778888888887777665
Q ss_pred c
Q 013324 374 Q 374 (445)
Q Consensus 374 ~ 374 (445)
.
T Consensus 165 ~ 165 (475)
T TIGR00924 165 A 165 (475)
T ss_pred H
Confidence 4
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=98.71 Aligned_cols=156 Identities=9% Similarity=-0.079 Sum_probs=96.0
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc--CCchHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLV 100 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~--Grrr~~ll~~~i~~ 100 (445)
+..+...+..+...........++|.|+++. |.+..+.+.+..++.+...++.++.|+++||+ |||+..........
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 3344555555555555666778999999986 99999999999999999999999999999999 45543221111111
Q ss_pred HHHHHHH---------------HHHHh-hhhh---HhhhhhhcccCccccchhhhHHHHHHHHHHH-HHHHHHHHHHHhh
Q 013324 101 AVSFSSV---------------FGWAA-TQVA---HMSMVNCITLNSTSRVVLTSCRNAFTMVANL-SLYAIAFIVFSVS 160 (445)
Q Consensus 101 ~~~~~~~---------------~~~~~-~~~~---~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~ 160 (445)
.++.... +..+. ...+ ......+.. ++++|++..++.+....+|.. .++.+.+.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~-- 409 (452)
T PRK11273 333 TIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELA-PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD-- 409 (452)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHc-ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 1111100 01111 1111 112234444 367899999988776666644 45666666643
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 013324 161 TAKTHADLENQYRWIAYSSIFIGCCFVGIF 190 (445)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 190 (445)
..||+..|.+.+..+++..+..
T Consensus 410 --------~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 410 --------FFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred --------HhcchHHHHHHHHHHHHHHHHH
Confidence 4578888776666655554444
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-05 Score=77.52 Aligned_cols=324 Identities=13% Similarity=0.053 Sum_probs=167.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH---HHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS---VLVAV 102 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~---i~~~~ 102 (445)
+..-..|+......-++....+.|+.+. .-|--..+.--.+-.+...+..|..|.+.||.-|.|....... +..++
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~ 84 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAA 84 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHH
Confidence 3456778888888889988999999998 4444444444444455666888999999999988776322111 11111
Q ss_pred HHHH---HH----H---HHhhhhhHh-------------hhh------hhc----c-cCccccchhhhHHHHHHHHHHHH
Q 013324 103 SFSS---VF----G---WAATQVAHM-------------SMV------NCI----T-LNSTSRVVLTSCRNAFTMVANLS 148 (445)
Q Consensus 103 ~~~~---~~----~---~~~~~~~~~-------------al~------~~~----~-~~~~~r~~~~~~~~~~~~~g~~~ 148 (445)
+... .+ . ......+.. +.. .|+ . .++++..++++...-...+..++
T Consensus 85 s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll 164 (432)
T PF06963_consen 85 SCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL 164 (432)
T ss_pred HHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence 1111 11 0 000000000 000 121 2 13455667777766677778888
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHh-------ccccc---cccccc--cc--CC--------
Q 013324 149 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL-------SRTEE---PRLKMG--LR--GN-------- 206 (445)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~~~e---~~~~~~--~~--~~-------- 206 (445)
+|++.+.+.+.. +.+....+.++..++..+.=+ ...|+ ++.+++ .+ ++
T Consensus 165 aPl~vG~l~t~~----------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
T PF06963_consen 165 APLFVGLLMTFA----------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSD 234 (432)
T ss_pred HHHHHHHHhhcc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccch
Confidence 888888876532 333333333444443332211 11121 111100 00 00
Q ss_pred cc-----------hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHH
Q 013324 207 SH-----------ARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 275 (445)
Q Consensus 207 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l 275 (445)
.+ ..++++..++++.|.......+++.. .-++...+..|+... |+++...+..-....+..+.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~ 312 (432)
T PF06963_consen 235 PSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWV 312 (432)
T ss_pred hhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11223444555555544444444433 334577778888876 999998888877777888888888
Q ss_pred HHHH-HHhhhhhhH---HHHHHHHHHHHHHHHHhhccCch--hH---HHHHHHHHHHHHHhHhhhhHhhhcccccccccc
Q 013324 276 LQEM-AWTGQRLKA---YYSAGGVLWVFCGAGILILPMNM--SA---FMYVLAIFVGIANALMMVTGISMQNVLVGEDLS 346 (445)
Q Consensus 276 ~~~~-~~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
.+++ +|++-. |. .+..-..+..++...+ +.+.++ .+ .++...++.=+|.=..--...-+.++.+|+++|
T Consensus 313 ~p~l~~riGlv-r~G~~~l~~q~~~L~~~v~~~-~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~R 390 (432)
T PF06963_consen 313 YPWLMKRIGLV-RAGLWSLWWQWVCLALCVVSF-WAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESER 390 (432)
T ss_pred HHHHHHHhcch-hhHHHHHHHHHHHHHHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHh
Confidence 8864 333321 21 1122222222332222 333222 11 111222222233322333445567778999999
Q ss_pred cchhHHhHHHHHHHHHHHHH
Q 013324 347 GCAFVCGTLSFLDKMSCGIA 366 (445)
Q Consensus 347 g~~~~~~~~~~~~~ig~~i~ 366 (445)
| ..+|+.+-.+.+...+.
T Consensus 391 g--~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 391 G--AVSGVQNSLQSLFELLS 408 (432)
T ss_pred h--HHHHHHHHHHHHHHHHH
Confidence 9 88887777766655444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-08 Score=95.14 Aligned_cols=142 Identities=9% Similarity=0.019 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Q 013324 226 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 304 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~ 304 (445)
.+.+++.+........+.|.+.++ +|.+..+.++......++..+++++.+++ +|+++ |+.+.++.++..++.+..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~--r~~~~~~~~~~~~~~~~~ 105 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNA--RYFMGIGLIATGIINILF 105 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCC--chhHHHHHHHHHHHHHHH
Confidence 344444444444556667766654 79999888888888888888888888853 33333 667777777777766655
Q ss_pred hhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 305 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+. ++.+.+.+..++.|++.|...+....+..+..+++++| ...++.+....+|..+++.+.+.+.
T Consensus 106 ~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 106 GFS--SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERG--GWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHH--hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 36666666667788888877777777777888888888 8888988888899988888777654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-08 Score=96.66 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=107.8
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHH
Q 013324 218 KKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGV 295 (445)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~ 295 (445)
.++++..+.+..++...........+|.+++++.|.+..+.++......++..+++++.|++ .||+ |+.+..+.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l---~Dr~g~r~~l~~~~~ 89 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRY---ADTLGPKKAVVFGLC 89 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhH---HhccCCcchHHHHHH
Confidence 34566667777777777777788899999998899999999998888888888888888853 4444 667777776
Q ss_pred HHHHHHHHHhhcc--C----chhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHH
Q 013324 296 LWVFCGAGILILP--M----NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 296 ~~~~~~~~~~~~~--~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
+.+++.....+.. . .+.+.+++..++.|++.+...+....+..+..+++++| .+.+..+....+|..+++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~l 167 (399)
T PRK05122 90 GCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTG--RVISWNGIATYGALAIGAPL 167 (399)
T ss_pred HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhc--cchhhhhhhhhHHHHHHHHH
Confidence 6655433332211 1 13445566777899999888877777777777888888 66667666666666666666
Q ss_pred HHHcc
Q 013324 370 LQSYQ 374 (445)
Q Consensus 370 ~~~~~ 374 (445)
.+.+.
T Consensus 168 ~~~l~ 172 (399)
T PRK05122 168 GVLLY 172 (399)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=99.24 Aligned_cols=149 Identities=10% Similarity=-0.062 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH---
Q 013324 36 NDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF--- 108 (445)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~----g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~--- 108 (445)
...........+|.|+.+. +.+..+.|.+.++..+...+++++.|+++||+||||..... .+...+...+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~-~~l~~~~~~l~~~~~ 313 (420)
T PRK09528 235 VACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLA-GTIMAVRIIGSGFAT 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHH-HHHHHHHHHHHHhcc
Confidence 3333344444566666553 56778899999999999999999999999999999975433 333333322211
Q ss_pred --------------HHHhhhhhHhhhhhhcccCccccchhhhH-HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH
Q 013324 109 --------------GWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 173 (445)
Q Consensus 109 --------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 173 (445)
.+..........+.+..+ ++.|+...+. .+....+|.++++.+.+.+.+ ..||+
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~----------~~G~~ 382 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFD-VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD----------SIGFQ 382 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ccceeeeeeehHHHHHHHHHHHHHHHHHHHHH----------hhCch
Confidence 111111122233344443 4556554433 344456777777777766653 45788
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 013324 174 WIAYSSIFIGCCFVGIFLSRTEE 196 (445)
Q Consensus 174 ~~~~~~~~~~~i~~~~~~~~~~e 196 (445)
..+.+.+++.++..++..+..|+
T Consensus 383 ~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 383 GTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 88887777776665555555554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.7e-08 Score=93.88 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHH
Q 013324 219 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 297 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~ 297 (445)
|+.++...+..++...........+|.++++++|.++.+.+.......++..++++..|++ ||+++ |+.+..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~--r~~l~~~~~~~ 91 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGA--KRSALQGMLAC 91 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc--hHHHHHHHHHH
Confidence 3445555555556666666777888889988899999999999888888888888888854 33333 66666666555
Q ss_pred HHHHHHH---hhcc---CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 298 VFCGAGI---LILP---MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 298 ~~~~~~~---~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
.++.+.. ...+ ..+.+.+++..++.|++.+...+.......+..|+++++ .+.+..+.....|..+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 92 GLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSG--KVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc--hhhhHHHHHHHHHHHHHHHHHH
Confidence 4433221 1111 235566677778899998887776667777778888888 7777777777777777777665
Q ss_pred Hcc
Q 013324 372 SYQ 374 (445)
Q Consensus 372 ~~~ 374 (445)
.+.
T Consensus 170 ~l~ 172 (392)
T PRK12382 170 LLH 172 (392)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-08 Score=94.32 Aligned_cols=133 Identities=10% Similarity=0.060 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhH
Q 013324 235 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSA 313 (445)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (445)
.........|. +.++.|.+..+.++......++..++.++.+++ +|+++ |+.+..+.++..++.....+. ++.+
T Consensus 20 ~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~--r~~~~~~~~~~~~~~~~~~~~--~~~~ 94 (385)
T TIGR00710 20 GIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGR--RPVLLLGLFIFALSSLGLALS--NNIE 94 (385)
T ss_pred HHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC--hHHHHHHHHHHHHHHHHHHHH--ccHH
Confidence 33333444444 456689999888988888888888888888864 33333 667777777777766665553 3666
Q ss_pred HHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 314 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
...+..++.|++.+...+....+..+..|+++++ ...+..+....+|..+++.+.+.+.
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELS--RIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788899999988888888888888888888 7888888888888888877766544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-08 Score=93.42 Aligned_cols=144 Identities=10% Similarity=0.040 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHH
Q 013324 224 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCG 301 (445)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~ 301 (445)
...+.+..+.+.-..+. +..+.+.++.+++..+.+.+.+...+.--++-.+.|. ++||. |+.+..+++++++..
T Consensus 33 ~~fiGYa~fYl~RknF~-~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~---~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 33 SIFIGYAAFYLTRKNFN-LAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGV---LSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHhHh-hccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhh---hcccCCCceeehHHHHHHHHHH
Confidence 33444444444444443 4455566667899999999888888888888888774 46665 778888888888887
Q ss_pred HHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHH--HHccc
Q 013324 302 AGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL--QSYQS 375 (445)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~--~~~~~ 375 (445)
+++-+.+ +.+.+.+...+.|+.+|+-.|.+......-.++++|| ...++.|...++|+++.+.+. +.+.+
T Consensus 109 il~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG--~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 109 ILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG--TWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC--ceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 7776644 7788888888999999999998888888889999999 899999999999999999988 55553
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=96.47 Aligned_cols=131 Identities=18% Similarity=0.023 Sum_probs=89.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~ 105 (445)
+......+...........++|.|.++. |.++.+.+.+.....+...+..++.|+++||+||||.++..+.+....+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 301 (394)
T TIGR00883 222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3334444555556666778899999765 999999999999999999999999999999999998755443332222211
Q ss_pred H--HH------------------HHHhhhhhHhhhhhhcccCccccchhhhHH-HHHHHHHHHHHHHHHHHHHH
Q 013324 106 S--VF------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 106 ~--~~------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~ 158 (445)
. .. +......+..+.+.|..+ +++|++..+.. .....+|..+++.+++.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 302 LLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFP-TEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC-ccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 0 00 222344455666777775 66788877763 44455677777777777654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=92.81 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=99.4
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 013324 241 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 319 (445)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (445)
.+..+.+++++|.+..+.++......++..++.+..+++ +|+++ |+.+..+.++..++.....+. ++.+.+++.-
T Consensus 28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~--r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r 103 (412)
T TIGR02332 28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGA--RRWIAGIMVLWGIASTATMFA--TGPESLYLLR 103 (412)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence 344457788899999999988888888888888888754 44333 667777777777776666553 3667777788
Q ss_pred HHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 320 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.|++.+...+....+..+..|++++| ...++++....+|..+++.+.+.+.
T Consensus 104 ~l~G~~~~~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 104 ILVGIAEAGFLPGILLYLTFWFPAYFRA--RANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998888878888888988888 8888888888888888887776553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=91.66 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=93.6
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 319 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (445)
.+|. +.+++|.+..+.++......++..++.+..+++ .||+ |+.+..+..+..++.+...+. ++.+..++..
T Consensus 31 ~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r 104 (390)
T PRK03545 31 LLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLL---TSNVERRKLLIGLFVLFIASHVLSALA--WNFTVLLISR 104 (390)
T ss_pred chHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence 3444 556789999988888887777777777777753 4444 677777777777776666553 3677777777
Q ss_pred HHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 320 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.|++.+...+....+..+..|++++| .+.|+.+....+|..+++.+.+.+.
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVAPAGKKA--QALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhh--hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888887787778888888888888 7888888888888888877766554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-08 Score=93.14 Aligned_cols=144 Identities=14% Similarity=0.034 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Q 013324 226 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 304 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~ 304 (445)
....++...........+|.|..+ .+.++.+.++......++..++.++.+++ +|+++ |+.+..+..+..++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~--r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDR--KKVMIGADLIRAVLVAVL 81 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhch--hHHHHHHHHHHHHHHHHH
Confidence 344455555555666677777665 68888888888888888888888888864 33333 666666666555554444
Q ss_pred hhcc---CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 305 LILP---MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 305 ~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+.. ..+.+..++..++.|++.+...+...++..+..|+++++ ..++..+....+|..+++.+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLT--QANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 126677777788899999998888888888888888888 7888888888888888877766553
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=100.11 Aligned_cols=145 Identities=14% Similarity=-0.053 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------
Q 013324 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------------- 108 (445)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------------- 108 (445)
....+.|.+..+.|.+..+.+.......+...++.++.|+++||+|||+..... .+...++.....
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIG-AAGMAICLFVLGILGASFVTGSSKS 380 (481)
T ss_pred ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHhhcccCCcccc
Confidence 344566777777799998899999999999999999999999999999875433 222222211100
Q ss_pred --------------HHHhhhhhH-hhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH
Q 013324 109 --------------GWAATQVAH-MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 173 (445)
Q Consensus 109 --------------~~~~~~~~~-~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 173 (445)
++.....+. .++..+..+ +++|++..+.......+|.++++.+.+.+.. ..+|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~----------~~~~~ 449 (481)
T TIGR00879 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP-LSLRPKGISIAVAANWLANFIVGFLFPTMLE----------SIGVG 449 (481)
T ss_pred hhHHHHHHHHHHHHHHHccccCeehhhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCcc
Confidence 111111111 223345443 6789999999888888888888777666543 35688
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc
Q 013324 174 WIAYSSIFIGCCFVGIFLSRTEEPR 198 (445)
Q Consensus 174 ~~~~~~~~~~~i~~~~~~~~~~e~~ 198 (445)
+.+.+.++++++..+...+..||++
T Consensus 450 ~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 450 GVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred ceehhHHHHHHHHHHHHheecccCC
Confidence 8777777777777766666667644
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=83.90 Aligned_cols=119 Identities=15% Similarity=0.012 Sum_probs=78.8
Q ss_pred HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H----------------HHHhhhhhHhhhhhhcccCc
Q 013324 66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F----------------GWAATQVAHMSMVNCITLNS 128 (445)
Q Consensus 66 ~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~----------------~~~~~~~~~~al~~~~~~~~ 128 (445)
+.+.+...+..++.|++.||+||||.+..... ....+.... + +.+.......+...|..+ +
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 82 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLF-IFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYP-P 82 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC-h
Confidence 44567778899999999999999998554333 232222221 1 222233344455566664 6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccc
Q 013324 129 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 196 (445)
Q Consensus 129 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e 196 (445)
++|++..+.......+|..+++.+.+.+.+ ..+|++.+.+.+++.++..+...+..||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQ----------FLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 789999999988888888888877776642 3578888877766666666555555554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-08 Score=92.33 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=110.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCch-HHHHHHHHHHHHH
Q 013324 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK-IWHGAGSVLVAVS 103 (445)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr-~~ll~~~i~~~~~ 103 (445)
.+...+..+...........+.|.+.++. |.++.+.+.+.+...+...++.++.|++.||+|||+ .+.. +.+...++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLI-GLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence 34445555666666777778899999998 999999999999999999999999999999999988 6433 33333333
Q ss_pred HHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 013324 104 FSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 166 (445)
Q Consensus 104 ~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 166 (445)
..... +.........+.+.+..+ +++|++..+..+....++..+++.+.+.+.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-------- 326 (352)
T cd06174 256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP-PEARGTASGLFNTFGSLGGALGPLLAGLLLD-------- 326 (352)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 22211 222233344455566654 6889999999999888898888888777652
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 013324 167 DLENQYRWIAYSSIFIGCCFVGIF 190 (445)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~i~~~~~ 190 (445)
..+|++.+.+.+++.++..+..
T Consensus 327 --~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 327 --TGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred --ccCcchHHHHHHHHHHHHHHHh
Confidence 4578888877777776665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-07 Score=94.14 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=101.4
Q ss_pred HHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-h--hHHH
Q 013324 215 YWFKKI-LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQR-L--KAYY 290 (445)
Q Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r-~--~~~~ 290 (445)
+.+|+| .++......++....++....+++.|+++++|.+..+.+..............++.|+ +.|| + |+.+
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~---LaDr~~G~r~~~ 91 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGW---LGDKVLGTKRVI 91 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccchHHHH
Confidence 345666 4777777777888888888999999999999998876655544433333333345554 3444 2 6677
Q ss_pred HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHH
Q 013324 291 SAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 370 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~ 370 (445)
..+..+..++.....+.. +..+...+...+.|++.|...+...++..+..|++++.....+++.+.+..+|..+|+.+.
T Consensus 92 ~~g~~~~~ig~~l~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 92 MLGAIVLAIGYALVAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 778777777655555432 2344445556678888888777766776666654332211345666777788888877777
Q ss_pred HHcc
Q 013324 371 QSYQ 374 (445)
Q Consensus 371 ~~~~ 374 (445)
+.+.
T Consensus 171 g~l~ 174 (500)
T PRK09584 171 PWLA 174 (500)
T ss_pred HHHH
Confidence 6664
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-07 Score=88.72 Aligned_cols=147 Identities=12% Similarity=0.077 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHH
Q 013324 222 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 300 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~ 300 (445)
+..+...++.............|.+ +++.|.+..+.++......++..++++..+++ +|+++ |+.+..+.++.+++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~--r~~~~~g~~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY--KAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHH
Confidence 4444555555555555545555554 77889999999999999899999999888854 33333 77888888888877
Q ss_pred HHHHhhcc-CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 301 GAGILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 301 ~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.+...... .++.+..+...++.|+|.+...+....+..+..++++++ ...++.+....+|..+++.+...+
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTAT--RRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66653322 235667777788999999998877777766666777766 556666666667777776665544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-07 Score=86.86 Aligned_cols=174 Identities=13% Similarity=0.036 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 013324 223 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGA 302 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~ 302 (445)
+.+.+..+............+|+.-+ ++|.+....|.....+..+..+++++...+.+..+| |+.+...+.+..++.+
T Consensus 16 ~aLa~~~F~igttEfv~~gLLp~iA~-dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~R-r~lLl~~l~lFi~~n~ 93 (394)
T COG2814 16 LALALAAFAIGTTEFVPVGLLPPIAA-DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLER-RRLLLGLLALFIVSNL 93 (394)
T ss_pred HHHHHHHHHHHhHHHHHHhchHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccch-HHHHHHHHHHHHHHHH
Confidence 34445555555556666666666665 479999999999999999999999887754333333 7777788888888888
Q ss_pred HHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCcccc
Q 013324 303 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLD 382 (445)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~~~~ 382 (445)
...+.+ +++...+.-++.|+..|..++.......+.+|+++++ .+.++...+..++..+|..+-..+++..
T Consensus 94 l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~--~Aiaiv~~G~tlA~v~GvPLGt~ig~~~----- 164 (394)
T COG2814 94 LSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG--RALALVFTGLTLATVLGVPLGTFLGQLF----- 164 (394)
T ss_pred HHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh--hHHHHHHHHHHHHHHHhccHHHHHHHHh-----
Confidence 777754 8888899999999999999999999999999999999 5555666666666666655555554221
Q ss_pred CCCcccccccccCCCCCCHhHHHHHHHHHhHHhHHHHHHHHHHHHhcc
Q 013324 383 NNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMK 430 (445)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 430 (445)
+.+..|..+..+..+.........|
T Consensus 165 -----------------------GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 165 -----------------------GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4466777777665555555566677
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-07 Score=90.39 Aligned_cols=144 Identities=13% Similarity=0.053 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH
Q 013324 224 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 302 (445)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 302 (445)
...+..+.............|. ++++.|.+..+.++......++..++.++.+.+ +|+++ |+.+..+.++..++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~--r~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGR--RLPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHH
Confidence 3334444444444444445554 556789999888888888888888998888864 44333 6667777777666666
Q ss_pred HHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 303 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
...+.+ +.+..++..++.|++.+...+....+..+..++++++ .+.++.+....+|..+++.+.+.+.
T Consensus 93 ~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 93 ACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN--KASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred HHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555533 6677777888999999988888888888888888888 8888888888888888887776654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-07 Score=89.60 Aligned_cols=147 Identities=8% Similarity=-0.019 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHH
Q 013324 220 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLW 297 (445)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~ 297 (445)
+.++...+..+............+|.+ +++.|.+..+.++......++.+++.++.+++ .||+ |+.+..+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~ 78 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALF---SSRYSLKHILLFLVALC 78 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHH---HccCccHHHHHHHHHHH
Confidence 344555555555555555566666665 45679998888888888899999999888853 3443 67777888877
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 298 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+++.+...+. ++.+.+++..++.|++.+...+.......+..++++++ ...+....+..+|..+++.+.+.+.
T Consensus 79 ~~~~~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 79 VIGNAMFTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVT--AAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred HHHHHHHHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhh--HHHHHHHHHHHHHHHHhccHHHHHh
Confidence 7776666554 47777788888999998887776666677777777777 6677777777788877777665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-07 Score=92.11 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHH
Q 013324 221 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWV 298 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~ 298 (445)
.++...+..++..........++|.+.++ +|.++.+.++......++..++.++.+++ .||+ |+.+..+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l---~d~~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWL---ADRVGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhchHHHHHHHHHHHH
Confidence 45555666666666666677788887765 79998888877777777777888877754 4443 566666666666
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 299 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.+...+. ++.+..++..++.|++.+...+....+..+..|+++++ ...++.+....+|..+++.+.+.+.
T Consensus 87 ~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 87 LGSLFCALS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM--AAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 655554443 36666777788999999998888888888888888888 7788888888888888877766654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-07 Score=90.05 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHH--HHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 013324 232 TRLVVNVSQAYLAFY--VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP 308 (445)
Q Consensus 232 ~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (445)
..........+.|.+ ++++.|.++.+.+.......++..++.++.+++ +|+++ |+.+..+..+..++.....+.
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~~~~~- 91 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGR--KPVLLAGLSLFALGSLGMLWV- 91 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCC--cHHHHHHHHHHHHHHHHHHHh-
Confidence 333444455666655 567789999999988888888888888888864 33333 666777776666665555543
Q ss_pred CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 309 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 309 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.+..++..++.|++.+...+....+..+..++++++ ...+..+....++..+++.+.+.+.
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 92 -ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKAN--RVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred -cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666667777888887776666666666677777666 4555555556666666666665544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-07 Score=87.15 Aligned_cols=147 Identities=10% Similarity=0.064 Sum_probs=98.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHH
Q 013324 218 KKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGV 295 (445)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~ 295 (445)
.+|.++...+................+..-++++|++..+.++...+..+...+..+..+ ++.||+ |+.+.++.+
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G---~l~Dr~G~R~v~~~~~l 108 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYS---FMVPIFGGRRWTVFSTA 108 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCChHHHHHHHH
Confidence 345555555555445455555555555555557899999888777776666666666656 445555 777777777
Q ss_pred HHHHHHHHHhhc---cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHH----HHHHHHHHHHHHH
Q 013324 296 LWVFCGAGILIL---PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTL----SFLDKMSCGIAVY 368 (445)
Q Consensus 296 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~ig~~i~~~ 368 (445)
+..+..+...+. ..++.+.+++..++.|++ +..++.....+.+..|++++| .+.|++ +++..+++.+++.
T Consensus 109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG--~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG--SALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH--HHHHHHHHHHhhHHHHHHHHHHH
Confidence 777666655543 124677788888899997 666777777888889999999 777776 4455555555555
Q ss_pred HH
Q 013324 369 VL 370 (445)
Q Consensus 369 l~ 370 (445)
++
T Consensus 186 ~i 187 (462)
T PRK15034 186 VI 187 (462)
T ss_pred HH
Confidence 44
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.8e-07 Score=88.37 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 013324 223 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 301 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~ 301 (445)
+...+..++............|.+. ++.|.+..+.+.......++..++.++.+++ +|+++ |+.+..+.++..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~--r~~~~~~~~~~~i~~ 86 (394)
T PRK03699 10 WISFLSYALTGALVIVTGMVMGPIA-EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPL--KRQLIFGFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHH
Confidence 3333444444444444555566654 5679999888888888888888888888864 33333 666777777766666
Q ss_pred HHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 302 AGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
....+. ++.+..++...+.|++.+...+....+..+..|++++| ...+..+....+|..+++.+.+.+
T Consensus 87 ~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 87 AGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRG--SRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHc--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655553 36666677778889888877776777777777888888 666666666677777777766554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-07 Score=90.28 Aligned_cols=128 Identities=8% Similarity=0.049 Sum_probs=95.5
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 320 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (445)
+..+++.++.|.+..+.++......++.+++.++.+++ +|+++ |+.+..+..+..++.+...+. ++.+..++..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 113 (398)
T TIGR00895 38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGR--KRVLLWSILLFSVFTLLCALA--TNVTQLLILRF 113 (398)
T ss_pred hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHH
Confidence 34444555679998888888888888888888888754 33333 666677776666665555543 36666677788
Q ss_pred HHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 321 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
+.|++.+...+....+..+..|+++++ ...++.+....+|..+++.+.+.+..
T Consensus 114 ~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 114 LAGLGLGGLMPNLNALVSEYAPKRFRG--TAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred HHhcccccchhhHHHHHHHHcCHHhhc--hhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 899999888888888888888888888 78888888888998888887776653
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-07 Score=88.58 Aligned_cols=143 Identities=14% Similarity=0.157 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHH
Q 013324 221 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 299 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~ 299 (445)
.++...+..+...........+.|.+++++.|.++.+.++......++..++.++.+++ +|+++ |+.+..+.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~i 79 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGP--RYTTTLSLLLLAI 79 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHH
Confidence 34555566666666677778888888888999999999988888888888888888864 44433 6677777777777
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHH
Q 013324 300 CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
+.+...+.+ .+.+..++..++.|++.+.. +....+..+..++++++ ...++......+|..+++.+
T Consensus 80 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 80 PCLWAGLAV-QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQG--TALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhh--HHHHHHHHHhHHHHHHHHHH
Confidence 766655532 15666667777888876543 44556677777888888 66666665555555444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=94.27 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=106.4
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 013324 216 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGV 295 (445)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~ 295 (445)
.+|||.|..+.....+.+++......-.+-+.. +..-|+...+++.....+..++.+++.|.+.++.|| ||.++.+-+
T Consensus 6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr-rrili~~~~ 83 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDR-RRILILSQL 83 (524)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHH
Confidence 478999999888888888777766555554444 456677777777777777888888888865444444 556655555
Q ss_pred HHHHHHHHHh---hccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccc--hhHHhHHHHHHHHHHHHHHHHH
Q 013324 296 LWVFCGAGIL---ILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGC--AFVCGTLSFLDKMSCGIAVYVL 370 (445)
Q Consensus 296 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~ig~~i~~~l~ 370 (445)
+.++....+. ..+..+.|.+++..++.|++.+...|.-.+...+.+|+++-.. +.....+|..+.+|+++|+.++
T Consensus 84 ~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 84 LRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4443333222 2234567888888899999999999999999999988888661 2333334555555666666666
Q ss_pred HHcc
Q 013324 371 QSYQ 374 (445)
Q Consensus 371 ~~~~ 374 (445)
..++
T Consensus 164 a~~G 167 (524)
T PF05977_consen 164 AFFG 167 (524)
T ss_pred HHHH
Confidence 6655
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-07 Score=88.03 Aligned_cols=127 Identities=12% Similarity=0.023 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHH
Q 013324 240 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYV 317 (445)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (445)
...+|.+. ++.|.++.+.+.......++..+++++.+++ .||+ |+.+..+..+.+++.+...+. ++.+..++
T Consensus 40 ~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l---~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 113 (394)
T PRK10213 40 VSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQT---IQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLI 113 (394)
T ss_pred HhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHH
Confidence 33455544 5679999888888777788888888887753 4444 667778888777766665553 47788888
Q ss_pred HHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 318 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 318 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..++.|++.+...+....+..+..|+++++ .+.+.......+|..+++.+.+.+.
T Consensus 114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~--~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 114 GRACLGLALGGFWAMSASLTMRLVPPRTVP--KALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998888888888888888888 7777777777777777777766654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-07 Score=88.26 Aligned_cols=143 Identities=11% Similarity=0.014 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHH-HHHHHHHHHHHHHH
Q 013324 227 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAY-YSAGGVLWVFCGAG 303 (445)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~-~~~~~~~~~~~~~~ 303 (445)
+.+++...........+|.|++++.|.+..+.+.......+...+.+++.+. +.||+ ||. +..+..+..++...
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~---l~Dr~g~r~~~~~~~~~~~~~~~~~ 80 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLAT---RSDYQGDRKGLILFCCLLAALACLL 80 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHhccCCchHHHHHHHHHHHHHHHH
Confidence 3455666677777889999999889999988888877777777777777664 34443 443 33444444444444
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 304 ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..+. ++.+..++...+.|.+.+...|....+..+..++++++.+...+..+....+|..+++.+.+.+.
T Consensus 81 ~~~~--~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 149 (375)
T TIGR00899 81 FAWN--RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA 149 (375)
T ss_pred HHhc--chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH
Confidence 4432 35555555555566555555666666655555555555323356655566667777766655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-07 Score=91.79 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHh-hhhhhHHHHHHHHH
Q 013324 219 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT-GQRLKAYYSAGGVL 296 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~-~~r~~~~~~~~~~~ 296 (445)
.|.++..+...+.....+++...++|.|+++.+|++..+.+.+.........++.++.|++ ||+ ++ ||.+.++.++
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGr--rr~iliG~il 85 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGN--RMAVMLGALL 85 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--HHHHHHHHHH
Confidence 3445666666677777888889999999999899999888877777777667777777754 443 33 6777888887
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccc--cccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 297 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED--LSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..++.+.+...+ .+.....+...+..+|.|...+...++..+..|++ +|+ ..+++.....++|+.+++.+.+.+.
T Consensus 86 ~~lg~lll~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~--sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 86 MAIGHVVLGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRD--GGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccc--ceehHHHHHHHHHHHHHHHHHHHHH
Confidence 777765444322 12222333334455666666666666777766543 344 4566666667778888888777765
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-07 Score=88.29 Aligned_cols=126 Identities=12% Similarity=0.063 Sum_probs=88.6
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 320 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (445)
.+|. +.++.|.++.+.++......++..++.++.+++ +|+++ |+.+..+..+..++.+...+. ++.+.+++..+
T Consensus 30 ~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr--r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 104 (394)
T PRK11652 30 AIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR--RPVILVGMSIFILGTLVALFA--HSLTVLIAASA 104 (394)
T ss_pred cHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC--hHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHH
Confidence 3444 445679999888888888888888888888864 33333 666777777666665555443 35666677778
Q ss_pred HHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 321 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+.|++.+...+....+..+..++++++ ...+..+.+..++..+++.+.+.+.
T Consensus 105 ~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 105 IQGLGTGVGGVMARTLPRDLYEGTQLR--HANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776666656666666666666 6777888888888888877766654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=91.53 Aligned_cols=128 Identities=11% Similarity=0.027 Sum_probs=98.9
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 013324 241 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 319 (445)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (445)
....++++++.|.+..+.++......++..++.++.+++ +|.++ |+.+..+.++..++.....+.+ +.+..++..
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 89 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGA--RKTLAVFIVIWGVFTGLQAFAG--AYVSLYILR 89 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCc--ceeeHHHHHHHHHHHHHHHHHc--CHHHHHHHH
Confidence 344455777789999988998888889999999888864 44333 5666677776666666555543 677777888
Q ss_pred HHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 320 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.|++.+...+....+..+..|+++++ ...+..+....+|..+++.+.+.+.
T Consensus 90 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 90 VLLGAAEAPFFPGIILIVASWFPASERA--TAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHH--HHHHHHHHhchHHHHHHHHHHHHHH
Confidence 8999999998888888888888988888 8888888888888888888777654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-07 Score=95.12 Aligned_cols=125 Identities=12% Similarity=0.060 Sum_probs=93.9
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 013324 241 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 319 (445)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (445)
....+.+..+.|.+....+++.....++.+++.++.+++ +|+++ |+.++++.++..++.++..+.+ +.+.+++..
T Consensus 187 s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GR--R~~lii~lil~~i~~ll~afa~--s~~~llv~R 262 (742)
T TIGR01299 187 GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGR--KQCLLICLSVNGFFAFFSSFVQ--GYGFFLFCR 262 (742)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 334455566788988888888888889999999988864 44333 6666667666666655555533 667777788
Q ss_pred HHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 320 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
++.|++.+...+....+..+..|++.+| ...+..+....+|..+++.+..
T Consensus 263 ~l~G~g~g~~~p~~~~~isE~~p~~~Rg--~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 263 LLSGFGIGGAIPIVFSYFAEFLAQEKRG--EHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999 7788777777777777765543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=90.97 Aligned_cols=125 Identities=12% Similarity=0.117 Sum_probs=89.0
Q ss_pred HHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc--CchhHHHHHHHH
Q 013324 244 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--MNMSAFMYVLAI 320 (445)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 320 (445)
.+++++ .|.++.+.++......++..++.+..+++ +|+.+ |+.+..+..+.+++.+.....+ .++.+...+...
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNP--RVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLF 126 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCC--ceehHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 445565 49999888888888888888888888854 33332 5666666666666655544332 134445556667
Q ss_pred HHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 321 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
+.|++.+...+.......+..|++++| .+.++.+....+|..+++.+.+..
T Consensus 127 l~g~~~g~~~~~~~~~i~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~l~~~~ 177 (438)
T TIGR00712 127 LNGWFQGMGWPPCGRTMVHWWSQSERG--TIVSIWNCAHNIGGGIPPLLVLLG 177 (438)
T ss_pred HHHHHhhcchHHHHHHHHHhcCcccch--hHHHHHHHHHHhHhHHHHHHHHHH
Confidence 788888887776667777788888899 888999999999988888776543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-08 Score=98.82 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=97.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc--CCchHHHHH-HHHHHH
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGA-GSVLVA 101 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~--Grrr~~ll~-~~i~~~ 101 (445)
..+.+....+...........++|.|.++.|.+..+.|.+.++..+...+.+|+.|+++||. ++|+..++. +.+...
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 34444555555555556666788999988899999999999999999999999999999984 334332222 122111
Q ss_pred HHHHHH-H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 102 VSFSSV-F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 102 ~~~~~~-~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
.+.... . ++.....+..+++.+..+ ++++++..++.+....+|..+++.+++.+.+.
T Consensus 322 l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~----- 395 (455)
T TIGR00892 322 LTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVG-AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA----- 395 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhh-HHHHhhHHhHHHHHHHHHHHccccceeeeehh-----
Confidence 111111 1 222233334455566654 67789999998888888888888777766532
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCF 186 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~ 186 (445)
..+|++.+.+.+++.++.
T Consensus 396 ----~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 396 ----TKNYKYIFYASGSIVVSA 413 (455)
T ss_pred ----cCCcchHHHHhhHHHHHH
Confidence 124666666555544443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-07 Score=89.29 Aligned_cols=152 Identities=14% Similarity=-0.010 Sum_probs=99.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 013324 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (445)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i-~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~ 104 (445)
.+......+...........+.++|++|.|.+++++|.+..+..+ ...++.++.|++.||+|+||..... .+......
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~-~~~~~~~~ 288 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILG-VGLAGSLA 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHH
Confidence 334444555666667777788899999999999999999988765 4455678999999999998875432 22221111
Q ss_pred HHHH-----------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013324 105 SSVF-----------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 161 (445)
Q Consensus 105 ~~~~-----------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 161 (445)
...+ ..+....+..+...+...+++++++..+..+....+|..+++.+++.+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~--- 365 (390)
T TIGR02718 289 LLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD--- 365 (390)
T ss_pred HHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1100 01122222333333444434678888888888889999999988888764
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHH
Q 013324 162 AKTHADLENQYRWIAYSSIFIGCCFVG 188 (445)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~i~~~ 188 (445)
..|++..+.+.+++.++..+
T Consensus 366 -------~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 366 -------RFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred -------HHccHHHHHHHHHHHHHHHH
Confidence 34677777666555555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-07 Score=88.10 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=97.6
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
+.++.+.+.+..+..........++.|.|++|.|.++.++|.+.++..+...+..++.|++.||+|+|+. +..+.+...
T Consensus 203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-l~~~~~~~~ 281 (382)
T TIGR00902 203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-LLISAIACV 281 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-HHHHHHHHH
Confidence 5566677777777777888888899999999999999999999999999999999999999999999886 444555454
Q ss_pred HHHHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHH-HHHHHHHHHHHHHHHHHHHh
Q 013324 102 VSFSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVFSV 159 (445)
Q Consensus 102 ~~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~ 159 (445)
+...... .++....+....+.+. ++++|+...+..+ ....+|..+++.+++.+.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~--~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~ 355 (382)
T TIGR00902 282 GRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ--PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT 355 (382)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433221 2233333333444443 3556677777654 45567888888888888653
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-07 Score=86.69 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHH
Q 013324 225 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG 303 (445)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~ 303 (445)
..+..+....+.......+|.+. ++.|.+..+.++......++..++.++.+++ +|+++ |+.+..+.++..++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~--r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGR--KPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCC--hHHHHHHHHHHHHHHHH
Confidence 33444444445555555666655 4579998888888888788888888888864 33333 66777777777766665
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 304 ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.... ++.+..++..++.|++.+...+...++..+..++++++ ...+..+....++..+++.+.+.+
T Consensus 85 ~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 85 CSLA--ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRA--KVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHh--CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 35556666677888888887777788888888888888 777777777777777777665544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-07 Score=88.18 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=86.2
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~ 103 (445)
+..+...+..+...........++|.|++|.|.++.+.|.+.++..+...+++++.|+++||+|+||..+..+.+....+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34444444434444555566678999998889999999999999999999999999999999965554344433333332
Q ss_pred HHHH-H---------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013324 104 FSSV-F---------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 159 (445)
Q Consensus 104 ~~~~-~---------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 159 (445)
.... + +.+.......+.+.+..+++++++...++.+....++..+++.+.+.+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 277 LCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1 111111111223333344456667777777666667777787777777654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-07 Score=91.25 Aligned_cols=149 Identities=10% Similarity=0.058 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-h--hHHHHHHHHH
Q 013324 220 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQR-L--KAYYSAGGVL 296 (445)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r-~--~~~~~~~~~~ 296 (445)
|.++..+...+....+++....+++.|+++++|.+..+.+...........+..++.| ++.|| + ||.+..+.++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G---~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGG---YVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHH---HhhhhccchHHHHHHHHHH
Confidence 4456666677777788899999999999999999888776665555444444455555 44555 3 7888888888
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccccccccc--ccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 297 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL--SGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..++.+...+.. +....+++...+.++|.|...|...++..+.+|+++ ++ ..++.+++..++|..+|+.+.+.+.
T Consensus 91 ~~~g~~~~~~~~-~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~--~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 91 LAIGYFMTGMSL-LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLD--GAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHhc-cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhh--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888776666533 222334455667889999888888888887776553 34 4566677777777777666665554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.8e-07 Score=88.71 Aligned_cols=119 Identities=9% Similarity=0.074 Sum_probs=79.9
Q ss_pred HHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 013324 246 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI 324 (445)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 324 (445)
.+++++|.+..+.+.......++..++.++.+++ +|+++ |+.+..+.++..++.+...+. ++.+.+++..++.|+
T Consensus 61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~--r~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~ 136 (476)
T PLN00028 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGP--RYGSAFLLMLTAPAVFCMSLV--SSATGFIAVRFFIGF 136 (476)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 4566789998888877777777777888887754 34433 556666666666665544443 355565666677888
Q ss_pred HHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 325 ANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
+.+...+ ...+..+..|++++| .+.++.+....+|..+++.+..
T Consensus 137 ~~~~~~~-~~~~i~~~~~~~~rg--~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 137 SLATFVS-CQYWMSTMFNGKIVG--TANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHHhhHH-HHHHHHHhcChhhee--HHHHHHHHHHHHHHHHHHHHHH
Confidence 7775443 344566778888999 7888877766777776655543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.1e-07 Score=88.05 Aligned_cols=152 Identities=14% Similarity=0.034 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----
Q 013324 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF---- 108 (445)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~---- 108 (445)
+...........++|.|.++. |.+......+..+..+...++.++.|+++||+||||.++. +.+...++....+
T Consensus 260 ~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~-~~~~~~~~~~~~~~~~~ 338 (438)
T PRK09952 260 LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYIT-GALIGTLSAFPFFMALE 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333445556667889998876 9998877666667777788889999999999999987543 3222221111000
Q ss_pred -----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHH-HHHHHHHHHHHHHHHHHHhhccccccchhh
Q 013324 109 -----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAKTHADLEN 170 (445)
Q Consensus 109 -----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (445)
+.........++++|..+ .+.|....++.+. +..+++.+++.+.+.+.+.. ..
T Consensus 339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p-~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~--------~~ 409 (438)
T PRK09952 339 AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFG-ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF--------GG 409 (438)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--------CC
Confidence 111223334566677765 5677777766433 33456666666666665321 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 013324 171 QYRWIAYSSIFIGCCFVGIFLSRTEE 196 (445)
Q Consensus 171 g~~~~~~~~~~~~~i~~~~~~~~~~e 196 (445)
+|+..+...++.+++..+..+ ..||
T Consensus 410 ~~~~~~~~~~~~~~i~~v~~~-~~~~ 434 (438)
T PRK09952 410 SWHSVAIYLLAGCLISAMTAL-LMKD 434 (438)
T ss_pred CchHHHHHHHHHHHHHHHHHH-Hccc
Confidence 466666655555555544433 3455
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-07 Score=89.36 Aligned_cols=145 Identities=8% Similarity=0.010 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHH
Q 013324 219 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVL 296 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~ 296 (445)
||+++.+....++............+.. ..+.+.++...++......+...+..++.|+ +.||+ |+++..+..+
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~---laDr~grr~vl~~~~~~ 77 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGA---FADSFPKGRVMFIANGI 77 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhH---hhhccCCchhhHHHHHH
Confidence 4567766666666666555555555555 4566777777777777777788888888775 44444 6677777776
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 297 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..++.+...+.. +. ++..++.|++.+...|...++..+.+|+++++ .+.+..+....+|..+|+.+.+.+.
T Consensus 78 ~~~~~~~~~~~~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~--~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 78 KLLGCLLMLFGI--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLV--KANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555443322 22 34456789999999999999999999999988 7888888888888778877766654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=95.06 Aligned_cols=146 Identities=13% Similarity=-0.004 Sum_probs=94.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----------------
Q 013324 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF---------------- 108 (445)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~---------------- 108 (445)
.+.|.+..+.|.+....++......+...++.++.|+++||+|||+.++ .+.+..+++.....
T Consensus 292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i-~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQI-IGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3556666777888777777777788888999999999999999988754 33433333322211
Q ss_pred -H----HHhhhhh-HhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHH--hhccccccchhhHHHHHHHHHH
Q 013324 109 -G----WAATQVA-HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS--VSTAKTHADLENQYRWIAYSSI 180 (445)
Q Consensus 109 -~----~~~~~~~-~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~~~g~~~~~~~~~ 180 (445)
. +.....| ...++.+..+ +++|+...++......++.++++.+.+.+.. .. .+..+|++.+.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~------~~~~~~~~~~~~~~ 443 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWL------VAHFHNGFSYWIYG 443 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccch------hhhccCccHHHHHH
Confidence 1 1111112 2355566654 6789999999888888888887766544431 11 12456777777766
Q ss_pred HHHHHHHHHHhccccccc
Q 013324 181 FIGCCFVGIFLSRTEEPR 198 (445)
Q Consensus 181 ~~~~i~~~~~~~~~~e~~ 198 (445)
+++++..++.++..||++
T Consensus 444 ~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 444 CMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHHHhccccCC
Confidence 666666666656667743
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.2e-07 Score=87.65 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=98.4
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 013324 241 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 319 (445)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (445)
.+..+.++++.|.++.+.+.......++..+++++.+++ +|+++ |+.+..+..+..++.+...+.+ +.+..++..
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~--r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r 113 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR--KPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSR 113 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 444455667789998888888888888888888888864 33333 7777778877777766655543 677777788
Q ss_pred HHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 320 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.+.|++.+...+....+..+..|+++++ .+.++...+..+|..+++.+...+.
T Consensus 114 ~l~G~g~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 114 FIVGMGMAGEYACASTYAVESWPKHLKS--KASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCHhHhh--HhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 8999999988888888888888888888 7888888888888888887766654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-08 Score=70.50 Aligned_cols=61 Identities=25% Similarity=0.376 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 013324 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (445)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~ 97 (445)
....+.+.+|+|.|+++.|+++.++|.+.++..+...++.|++|.++||+||+|..+..+.
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 4456778899999999999999999999999999999999999999999999998555443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.1e-06 Score=83.52 Aligned_cols=147 Identities=13% Similarity=0.078 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHH-HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH---HH
Q 013324 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVM-LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS---VF 108 (445)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~-~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~---~~ 108 (445)
+...........+.++|+.+. |.+++++|.+. ....+...++.++.|+++||+||||..++.+.......... ..
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~ 311 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI 311 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555556777787664 99999999997 46678899999999999999999886544332211111000 00
Q ss_pred -----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhH
Q 013324 109 -----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 171 (445)
Q Consensus 109 -----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g 171 (445)
..+....+..++..+..+ ++.+++..+..+....+|..+++.+.+.+.+ ..|
T Consensus 312 ~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~-~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----------~~G 380 (491)
T PRK11010 312 TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCN-KSFSATQFALLSALSAVGRVYVGPVAGWFVE----------AHG 380 (491)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhC
Confidence 112222333344455554 4556667777777667777666655566543 457
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013324 172 YRWIAYSSIFIGCCFVGIFL 191 (445)
Q Consensus 172 ~~~~~~~~~~~~~i~~~~~~ 191 (445)
|+..|.+.++++++..+...
T Consensus 381 ~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 381 WPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88877777666666554443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.73 E-value=8e-07 Score=89.24 Aligned_cols=141 Identities=9% Similarity=0.011 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 013324 228 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI 306 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~ 306 (445)
..++............|.+ .++.|.+..+.++......++..++.++.+++ +|+++ |+.+..+..+..++.+....
T Consensus 10 ~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~~~~ 86 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTI-AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGT--RRLFLISTFAFTLGSLLCGV 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCc--HHHHHHHHHHHHHHHHHHhC
Confidence 3333333344444555554 45679988888888888888888888888864 33333 66777777777777666555
Q ss_pred ccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 307 LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 307 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
. ++.+..++..++.|++.+...+....+..+..|++++| .+.++++....+|..+++.+.+.+..
T Consensus 87 ~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 87 A--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRG--RAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred c--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 3 36677777888999999988888888888888989988 88888888888988888887776653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.4e-07 Score=88.24 Aligned_cols=121 Identities=14% Similarity=0.056 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHH---HH-----
Q 013324 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS---SV----- 107 (445)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~---~~----- 107 (445)
......+..++|.|+++. |.+..+.++...+..+...++.++.|+++||+||||+.+............ ..
T Consensus 251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS 330 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 344555667899999986 999999999998999999999999999999999999755433222111100 00
Q ss_pred --------H----HHHhhhhhHhhhhhhcccCccccchhhhHHHH-HHHHHHHHHHHHHHHHHH
Q 013324 108 --------F----GWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 108 --------~----~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~ 158 (445)
. +++...........|..+ +++|+...++... +..+++.+++.+.+.+.+
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p-~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 331 FARMLAVELWLSFLYGSYNGAMVVALTEVMP-AEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC-CCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 0 111222223344556664 6778888776433 333334455555555544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.8e-07 Score=88.02 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH--HH-HH----
Q 013324 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF--SS-VF---- 108 (445)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~--~~-~~---- 108 (445)
.........++|.|+.+. |.+..+.+...++..+...+.+++.|+++||+||||..+....+...... .. ..
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS 335 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 444555667899999876 99999999999998888899999999999999999875543332111110 00 00
Q ss_pred -------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHH
Q 013324 109 -------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF 141 (445)
Q Consensus 109 -------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~ 141 (445)
.......+..+...|..+ ++.|+...++.+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp-~~~r~t~~g~~~~~ 380 (432)
T PRK10406 336 PYAAFGLVMCALLIVSFYTSISGILKAEMFP-AQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCccchhhhHHHHH
Confidence 011111223344567765 77899998887654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.6e-07 Score=86.64 Aligned_cols=149 Identities=10% Similarity=0.076 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHH
Q 013324 219 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 297 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~ 297 (445)
||.+|......++...+......++|.|+.++.|.++.+.+.......+...++.++.|++ ||.+| |+.+..+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~gr--r~~~~~~~~~~ 78 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGL--KKHLLWIISGL 78 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHH
Confidence 5778888888888888888888999999999899999999998888889999999888864 44333 44444443333
Q ss_pred HHHHHHHhh--ccC---ch-hHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 298 VFCGAGILI--LPM---NM-SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 298 ~~~~~~~~~--~~~---~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
++....... ..+ .+ .+...+..++.|++.+...+...++..+..++ ++ ..++.......+|..+++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~--~~~g~~~~~~~~g~~~g~~~~g 154 (396)
T TIGR00882 79 LVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SN--FEYGKARMFGCVGWALCASIAG 154 (396)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cc--cccchhhhhcccHHHHHHHHHh
Confidence 332221111 111 11 12223334556666666666555554443222 23 3344555555666677766655
Q ss_pred Hc
Q 013324 372 SY 373 (445)
Q Consensus 372 ~~ 373 (445)
.+
T Consensus 155 ~l 156 (396)
T TIGR00882 155 IL 156 (396)
T ss_pred hh
Confidence 44
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-06 Score=87.66 Aligned_cols=139 Identities=11% Similarity=0.116 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhh
Q 013324 229 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILI 306 (445)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~ 306 (445)
.+....-.....+-.|.. .+++|.+..+.++......++..+..+..++ +.||+ |+.+..+..+..++.+...+
T Consensus 15 ~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~---l~D~~Grk~~l~~~~~~~~~~~~~~~~ 90 (495)
T PRK14995 15 YIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGA---LGDRIGFKRLLMLGGTLFGLASLAAAF 90 (495)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHH---HHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344455655 4567988888888888777777777777774 44444 77788888887777666655
Q ss_pred ccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccc-cccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 307 LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL-VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 307 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
. ++.+.+++.-.+.|++.+...+.......+. .|+++++ .+.|++.....+|..+|+.+.+.+..
T Consensus 91 a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~--~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 91 S--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN--MALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 4777777888899999988877666655444 4677888 78888888888888888888777764
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=86.93 Aligned_cols=157 Identities=13% Similarity=0.005 Sum_probs=91.0
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
++.|.+++-=+...-.+--...++|.|+++. |+++.+.|.....+.+..++..|+.|+|+||+|.+|+.+..-.....+
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA 297 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence 3334433333333333445567899999987 999999999999999999999999999999999999754332222222
Q ss_pred HHHHHH-----------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013324 103 SFSSVF-----------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 159 (445)
Q Consensus 103 ~~~~~~-----------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 159 (445)
...... ..+..+-....+++.+. +++-+.+.++......+|+...+..-+...+.
T Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if--~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~ 375 (417)
T COG2223 298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF--PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDL 375 (417)
T ss_pred HHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH--HhhhhHHHHHHHHhccccccchhHHHHHHHHh
Confidence 222221 01111222223333333 34556666666665555554443333333221
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 013324 160 STAKTHADLENQYRWIAYSSIFIGCCFVGIFL 191 (445)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 191 (445)
...+...+.+...+.+++.++.+
T Consensus 376 ---------tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 376 ---------TGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHH
Confidence 12366666666666666655443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-06 Score=83.65 Aligned_cols=126 Identities=11% Similarity=0.044 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhhcccchh-hhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHH
Q 013324 239 SQAYLAFYVINDLRMGQSA-KALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFM 315 (445)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (445)
...+..+++.++.|++..+ .+.+......+-.+..+..++ +.||+ |+.+..+.+...+...+..+. ++.+.+
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~Gl---LaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L 118 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFL---LTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHM 118 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHH---HHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3455666788899999998 888888888888887777774 45555 888888888888777777664 367778
Q ss_pred HHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHH
Q 013324 316 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372 (445)
Q Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~ 372 (445)
.+.-++.|++.|... ....+....+|+++++ .+.|..+.+..+|.++++.+.+.
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~--ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ--RAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988 7888888889999999 88999999999999999888777
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-06 Score=79.11 Aligned_cols=337 Identities=11% Similarity=0.050 Sum_probs=166.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh-----ccCCchHHHHHHHHHHHH
Q 013324 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~D-----r~Grrr~~ll~~~i~~~~ 102 (445)
...+--+...+..+... .+|.+++.-|.|.+..|....++- -.-...+|..+.| |+||||.|+.-.......
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~ 111 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGL 111 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHH
Confidence 33333344455556665 677777766999988876544432 2234678999999 999999998654433332
Q ss_pred HHHHH-H---------------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHH
Q 013324 103 SFSSV-F---------------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 154 (445)
Q Consensus 103 ~~~~~-~---------------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 154 (445)
.+... . ..+...++.-.+.-.+- ++++-+-++..+.++...|..++..+-.
T Consensus 112 ~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmL-s~e~lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 112 FMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTML-SRENLGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred HHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhc-CHhhcCchhHHHHHHHhhhHHhhcceee
Confidence 22221 1 11111222222222332 3566777777776666666665543322
Q ss_pred HHHH-hhcc---cccc-c----hhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHH---HHHHHHhchHH
Q 013324 155 IVFS-VSTA---KTHA-D----LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARI---SWAYWFKKILY 222 (445)
Q Consensus 155 ~l~~-~~~~---~~~~-~----~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~ 222 (445)
.+.+ -+.+ .+.+ + .-.++-|. .+.+.++...+..+..||++.+..++.+.+..+ -+++++|-|..
T Consensus 191 aL~s~dF~N~y~rs~P~~~g~ItL~gy~~f---wg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v 267 (510)
T KOG3574|consen 191 ALESPDFCNTYLRSIPLDQGFITLAGYLWF---WGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSV 267 (510)
T ss_pred EecChhhhhHHHhcCcCccceEEhhHHHHH---HHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccH
Confidence 1111 0000 0000 0 01122221 122333344444455566554433333333333 34666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHH
Q 013324 223 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA---WTGQRLKAYYSAGGVLWVF 299 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~---~~~~r~~~~~~~~~~~~~~ 299 (445)
............++.+.....+.-+.| .|.+....+..........++.+...+.+. |--+++-|.+..-.....+
T Consensus 268 ~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~ 346 (510)
T KOG3574|consen 268 RWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLV 346 (510)
T ss_pred HHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHH
Confidence 777777777777777777766766665 488877665544333333444444333210 0011111111111122222
Q ss_pred HHHHHhhcc---C-c-h-----hHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHH----H
Q 013324 300 CGAGILILP---M-N-M-----SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCG----I 365 (445)
Q Consensus 300 ~~~~~~~~~---~-~-~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~----i 365 (445)
...+.+..+ . . . ..+.+....+.+...-.++....+..++..+++..| +.+++.|...++|+- +
T Consensus 347 ~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~igg--TymTlLNTLsnLGg~wp~tv 424 (510)
T KOG3574|consen 347 QTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGG--TYMTLLNTLSNLGGNWPGTV 424 (510)
T ss_pred HHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCc--cHHHHHHHHHHhcCCcHHHH
Confidence 222222222 1 1 1 111222233444444444555666777777888888 888888888888754 4
Q ss_pred HHHHHHHcc
Q 013324 366 AVYVLQSYQ 374 (445)
Q Consensus 366 ~~~l~~~~~ 374 (445)
...+++.+.
T Consensus 425 ~l~l~D~lt 433 (510)
T KOG3574|consen 425 ALWLADGLT 433 (510)
T ss_pred HHHhcccCc
Confidence 444444444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.1e-07 Score=86.48 Aligned_cols=130 Identities=9% Similarity=0.069 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHH
Q 013324 238 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMY 316 (445)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (445)
.....+|.+.+ +.|.++.+.+.......++..++.++.+++ +|.++ |+.+..+..+..++.....+. ++.+...
T Consensus 9 ~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 83 (377)
T PRK11102 9 MYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGR--KPVILGGTLVFALAAVACALA--QTIDQLI 83 (377)
T ss_pred HHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCC--hHHHHHHHHHHHHHHHHHHHH--ccHHHHH
Confidence 34456666665 479998888888888888888888888864 33332 667777777777666665553 3566667
Q ss_pred HHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 317 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 317 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+..++.|++.+...+....+..+..++++++ ...++.+....+|..+++.+.+.+.
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFS--RMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778889998888877778888888888888 7788888888888888877766554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-06 Score=83.67 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh-----hhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHH
Q 013324 221 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA-----KALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAG 293 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~ 293 (445)
.+....+..++..........++|.+.++ .|.+..+ .+.......+...++.++.+++ .||+ |+.+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~ 90 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGL---ADRKGRKIMLLRS 90 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhCcHHHHHHH
Confidence 34444555556666666777888888865 6776543 2555666666677777777753 4443 6666677
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 294 GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
..+..++....... ++.+..++..++.|++.+. .+....+..+..+++++| ...+..+....+|..+++.+.+.+
T Consensus 91 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l 165 (408)
T PRK09874 91 ALGMGIVMVLMGLA--QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSG--WALGTLSTGGVSGALLGPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665554442 3666667777778876553 455555666667888888 777888888888888887776655
Q ss_pred c
Q 013324 374 Q 374 (445)
Q Consensus 374 ~ 374 (445)
.
T Consensus 166 ~ 166 (408)
T PRK09874 166 A 166 (408)
T ss_pred H
Confidence 3
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-06 Score=86.83 Aligned_cols=144 Identities=14% Similarity=0.068 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHH
Q 013324 224 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 302 (445)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 302 (445)
...+..++............| .+.+++|.+..+.+.......++..++.++.+++ +|+++ |+.+..+.++.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~ 100 (496)
T PRK03893 24 AAWLGYLLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR--RLAMVISIVLFSVGTL 100 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHH
Confidence 334444444444444444444 4556789998888888888888888888888864 33333 6667777777776666
Q ss_pred HHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 303 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
...+. ++.+..++..++.|++.+...+....+..+..++++++ ...+..+....+|..+++.+.+.+.
T Consensus 101 ~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 101 ACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN--KASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65553 36677777788899998888887778888888888888 7788888888888888888777654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-06 Score=82.75 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHH
Q 013324 222 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 300 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~ 300 (445)
+..+.++++...+.......+.|.+ ++++|.+..+.++......++..++++..+++ +|+++ |+.+..+..+..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~--r~~l~~g~~~~~~~ 104 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY--KAGIITGLFLYALG 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHH
Confidence 3444455555555556666666665 88899999999999998999999999888854 44433 77888888888877
Q ss_pred HHHHhh-ccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHH
Q 013324 301 GAGILI-LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372 (445)
Q Consensus 301 ~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~ 372 (445)
.+.... ...++.+.+++..++.|++.+...+....+..+..++++++ ...+..+....+|..+++.+...
T Consensus 105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~--~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 655421 12346677778888999999998877777666554445444 34556666666777777665443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-06 Score=84.27 Aligned_cols=130 Identities=13% Similarity=0.124 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHH
Q 013324 238 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMY 316 (445)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (445)
.+...+|. +.+++|.++.+.+.......++..++.++.+++ +|+.+ |+.+..+.....++.....+. ++.+..+
T Consensus 31 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~--r~~l~~~~~~~~~~~~~~~~~--~~~~~l~ 105 (406)
T PRK15402 31 MIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGR--RPVMLAGVAFFILTCLAILLA--QSIEQFT 105 (406)
T ss_pred hHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHH--ccHHHHH
Confidence 34444444 445689998888877777888888888887754 33333 667777777766666655553 3566667
Q ss_pred HHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 317 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 317 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
....+.|++.+...+.......+..++++++ ...+.......++..+++.+.+.+.
T Consensus 106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAI--KITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHhChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888877776677777777777766 5555655555566666666655543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=90.85 Aligned_cols=127 Identities=10% Similarity=0.066 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhH
Q 013324 235 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSA 313 (445)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (445)
.........| +++++.|.+..+.+.......++..++.++.+++ +|+++ |+.+..+..+..++.++..+.+ +.+
T Consensus 10 ~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~~~~~~--~~~ 84 (379)
T TIGR00881 10 VRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNP--RVFLPIGLILCAIVNLFFGFST--SLW 84 (379)
T ss_pred hHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCC--eehhHHHHHHHHHHHHHHHHhh--hHH
Confidence 3334444444 5667789999988988888888888888888854 33333 6677777777777766666543 677
Q ss_pred HHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHH
Q 013324 314 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVY 368 (445)
Q Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~ 368 (445)
..++..++.|++.+...+....+..+..|+++++ ...++.+....+|..+++.
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~ 137 (379)
T TIGR00881 85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG--TWVSFWNCSHNVGGGLLPP 137 (379)
T ss_pred HHHHHHHHHHhhccccCCchHHHHHHhcCHhhhe--eeEeehhccchhHHHHHHH
Confidence 7777888889999888888888888888888888 6777788888888888874
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=89.60 Aligned_cols=154 Identities=10% Similarity=0.110 Sum_probs=90.7
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHH
Q 013324 217 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGV 295 (445)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~ 295 (445)
.||++++.+...++++.+.+....+++|.++++..|+++.+.|.+.+...+.+++.+++.|.+ +|.++|++....+..+
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l 83 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL 83 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence 478889988888888888899999999999999899999999999999999999999988875 5656542222333333
Q ss_pred HHH-HHHHHHhhcc--CchhHH-HHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 296 LWV-FCGAGILILP--MNMSAF-MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 296 ~~~-~~~~~~~~~~--~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
+.. ..+....+.+ ..+.+. .++..+..++......|..-++.++.. |+.+ .=+|=..+.+.+|.+++..+.|
T Consensus 84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~--feYG~~R~wGSig~ai~s~~~G 159 (412)
T PF01306_consen 84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNG--FEYGRARMWGSIGFAIASLLAG 159 (412)
T ss_dssp HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHS--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhc--CCcchHHHHhhHHHHHHHHHhh
Confidence 222 2222222211 122222 122222333333334444444444332 3333 4466566666666666666666
Q ss_pred Hcc
Q 013324 372 SYQ 374 (445)
Q Consensus 372 ~~~ 374 (445)
.+.
T Consensus 160 ~L~ 162 (412)
T PF01306_consen 160 ILF 162 (412)
T ss_dssp HHH
T ss_pred eee
Confidence 554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.9e-07 Score=88.04 Aligned_cols=136 Identities=12% Similarity=0.141 Sum_probs=87.5
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
+..+...+..+...........+.+.|.++. + ++.+.+.+.++..+...++.+++|+++||+||||.+.. +.+...+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~-~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG-GILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHH
Confidence 3444445555555555555544555555554 5 56677888888899999999999999999999987544 3333332
Q ss_pred HHHHHH------------------HHHhhhhhHhhhhhhccc------CccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013324 103 SFSSVF------------------GWAATQVAHMSMVNCITL------NSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 103 ~~~~~~------------------~~~~~~~~~~al~~~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 158 (445)
+..... +.+.......++++|..+ ++++++...+..+....+|..+++.+.+.+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 300 GYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 222333344455555543 23456788888888888999999988888877
Q ss_pred hhc
Q 013324 159 VST 161 (445)
Q Consensus 159 ~~~ 161 (445)
..+
T Consensus 380 ~~G 382 (437)
T TIGR00792 380 IIG 382 (437)
T ss_pred HcC
Confidence 543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-06 Score=81.94 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH--------H---
Q 013324 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF--------G--- 109 (445)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~--------~--- 109 (445)
+.+..|-..++++.|++..++-++.....+...+...+...+.||+|||+. ++.+...+.+....+. .
T Consensus 287 ~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL-ll~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (485)
T KOG0569|consen 287 NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL-LLISLSLMAVALLLMSIALFLSNSFGSW 365 (485)
T ss_pred ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334455666677779999999999999999999999999999999999776 4444444443333221 1
Q ss_pred --HH-------------hhhhhHh-hhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH
Q 013324 110 --WA-------------ATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 173 (445)
Q Consensus 110 --~~-------------~~~~~~~-al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 173 (445)
|. ....|.. -+.+|+.+ ++.|..+.++......+...+.....+++-+.+ |-
T Consensus 366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~-~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~----------g~- 433 (485)
T KOG0569|consen 366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP-QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI----------GP- 433 (485)
T ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cc-
Confidence 11 1111111 22356665 788999998888888888887777767765443 22
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccc
Q 013324 174 WIAYSSIFIGCCFVGIFLSRTEEPRLK 200 (445)
Q Consensus 174 ~~~~~~~~~~~i~~~~~~~~~~e~~~~ 200 (445)
+.|+...+.+.+..+..++.+||.+.+
T Consensus 434 ~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 434 YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 555666677777777888889996543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-06 Score=86.14 Aligned_cols=68 Identities=18% Similarity=0.049 Sum_probs=57.8
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCch
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK 90 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr 90 (445)
++..+...+..+...........++|.|+.+. |.+..+.|++.++..+...++.++.|+++||+++||
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~ 328 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK 328 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556677777777777777788999999886 999999999999999999999999999999976543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-06 Score=81.42 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=119.6
Q ss_pred CchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIG-LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
++.++...+.+..+..+......+.|.+.|++|.| .+....|.+.++..+.-...-...+++..|+|.|+.++ .+.+.
T Consensus 204 lk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~-~a~~~ 282 (400)
T PF03825_consen 204 LKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLL-LALVA 282 (400)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence 45667777888888999999999999999999995 88889999999999999999899999999999988643 33433
Q ss_pred HHHHHHHHH----------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHH-HHHHHHHHHHHHHHHH
Q 013324 100 VAVSFSSVF----------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIV 156 (445)
Q Consensus 100 ~~~~~~~~~----------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l 156 (445)
.++=+.+.. .++.........+.+.. +++.|.+..++... ..++|..++..+++.+
T Consensus 283 ~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~-p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 283 YAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA-PPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333322211 22223333333444444 47778888887665 4568999999999999
Q ss_pred HHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccc
Q 013324 157 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 197 (445)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 197 (445)
.+.++.. ....|...+.+.+++.++..+++.+..||+
T Consensus 362 ~~~~g~~----~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 362 YDAFGAR----GMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHhcch----hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 8765421 133455566666666666666665556664
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-06 Score=83.13 Aligned_cols=164 Identities=11% Similarity=0.035 Sum_probs=110.8
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCc--hHHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIWHGAGSV 98 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grr--r~~ll~~~i 98 (445)
+.++...|.++.+..+-..+.+..+...|.++. |.+.++...+..+..+...++..++|++.||+|.| |..+.....
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL 358 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 345666677887777777777888889999976 99999999999999999999999999999999998 654332222
Q ss_pred HHHHHHHHHH--------------------HHHhh----hhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHH
Q 013324 99 LVAVSFSSVF--------------------GWAAT----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 154 (445)
Q Consensus 99 ~~~~~~~~~~--------------------~~~~~----~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 154 (445)
...+....++ .++.. ....-++..++.| +++++...++.....-..+.+++++.+
T Consensus 359 ~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP-~g~e~efFgly~i~gk~ss~lGPll~g 437 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIP-PGREAEFFGLYAITGKASSWLGPLLFG 437 (477)
T ss_pred HHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2122222111 12222 2223456677776 566688899988888888889888887
Q ss_pred HHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccc
Q 013324 155 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 196 (445)
Q Consensus 155 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e 196 (445)
.+....+ ..|+.+..+.++.++..++. ..+++
T Consensus 438 ~i~~~tg---------~~r~g~~~l~~lf~~gl~ll-~~v~~ 469 (477)
T PF11700_consen 438 LITDATG---------SQRYGFLFLLVLFLIGLILL-FFVDV 469 (477)
T ss_pred HHHHHhC---------CchhHHHHHHHHHHHHHHHH-hhccc
Confidence 7765431 24555544445455554444 33444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=7e-06 Score=80.42 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhh----hhhhHHHHHHHHHHHHH
Q 013324 226 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG----QRLKAYYSAGGVLWVFC 300 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~----~r~~~~~~~~~~~~~~~ 300 (445)
...++......+....-+|.|++++ |++.++.+++...... .+..++.+++ ||.. .|+|+.+..+..+.+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 3455566666777778889999875 9999998887655443 4556666653 4441 12255667767777666
Q ss_pred HHHHhhccC-chhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 301 GAGILILPM-NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 301 ~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
...+.+.++ ++.+.+.+..++.++..+...+...++..+..|+++++ .+.++...+..+|..+++.+...+.
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~--~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG--AGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 666655532 34565565656667777777777888888888989888 8888888888888888877665543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.8e-06 Score=79.80 Aligned_cols=130 Identities=10% Similarity=0.086 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHH
Q 013324 237 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 315 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (445)
..+...+|.. ++++|.+..+.++......++..++++..|++ ||++| |+.+.........+ ...... ..+.+.+
T Consensus 8 ~~~~~~lp~i-~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~gr--r~~~~~~~~~~~~~-~~~~~~-~~~~~~l 82 (368)
T TIGR00903 8 VTFSPVLSLV-AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFK--RWFLFGSLATFAAA-AGRLLD-PFNYEWL 82 (368)
T ss_pred HHHHhhHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHH-HHHHHH-hccHHHH
Confidence 3344444444 55679999988988888888888888888864 44432 44443333333222 221221 2366777
Q ss_pred HHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 316 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.-++.|++.+... .......+..|+++++ .+.++.+.+..+|..+++.+...+.
T Consensus 83 ~~~R~l~G~g~~~~~-~~~~~~~~~~~~~~r~--~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 83 LACQLLAALGQPFLL-NAFAPAASQIREERRD--LVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred HHHHHHHHhHhHHHH-HHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999988643 3344446677888888 8888888888888888877666554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-06 Score=76.05 Aligned_cols=113 Identities=14% Similarity=0.178 Sum_probs=86.5
Q ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH---------------
Q 013324 45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF--------------- 108 (445)
Q Consensus 45 ~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~--------------- 108 (445)
+.=|.+++|- |+|+...|.+.+.-....++..|+.|.++||+||+-.|+..+.+....+=...+
T Consensus 285 ~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGL 364 (459)
T KOG4686|consen 285 TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGL 364 (459)
T ss_pred hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhh
Confidence 3346777775 999999999999999999999999999999999998888777777666643332
Q ss_pred HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013324 109 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 109 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 158 (445)
.|....-.+..+++.+.+ +++-+.+.++.+...++|-.+.+++.+.+..
T Consensus 365 sysllAcslWP~va~~vp-E~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 365 SYSLLACSLWPCVASLVP-EEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred hHHHHHHHHhhhhhhhCC-HHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 333333334445555554 7788999999999999998888888777653
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=89.97 Aligned_cols=121 Identities=20% Similarity=0.159 Sum_probs=100.3
Q ss_pred HHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 013324 246 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIA 325 (445)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 325 (445)
-.++.+|.+....+++.....+..++.+++.+++++..+| |+++.+|..+...+.+...+. +.+|++.+.-.+.|+|
T Consensus 58 ~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR-~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiG 134 (493)
T KOG1330|consen 58 EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNR-KRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIG 134 (493)
T ss_pred HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCc-ceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccc
Confidence 3556678888888888888888889999999976555554 667788888888777776664 5889999999999999
Q ss_pred HhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 326 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
.+...+.+..++++.+++++|+ ..+++.+++..+|.++|-..-+
T Consensus 135 eAs~~~ia~s~IaD~f~~~~Rs--~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 135 EASYSPIAPSLIADSFPDDKRS--RVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred hhhhcccchhHhhhcCcchhhh--HHHHHhhhhcccccceeEEeee
Confidence 9999999999999999999999 8999999999999877654433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.9e-06 Score=92.13 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=102.0
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHH
Q 013324 215 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQ--SAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYY 290 (445)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~ 290 (445)
..++++.|+.+++..++..+........+..++....+.+. ...++...+..++.++++++.|+ +.||+ |+.+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~---l~Dr~grk~~l 80 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGF---LADKFSKNRVI 80 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhh---hcccccHHHHH
Confidence 45677888777766666555554444444455544444433 23455666666777777777775 44444 5666
Q ss_pred HHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHH
Q 013324 291 SAGGVLWVFCGAGILIL-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
.++.++.++..++..+. ..++.+.+++..++.|++.+...+...++..+..++++++ .+.|..+.+..+|..+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~ig~~lg~~l 158 (1146)
T PRK08633 81 RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLS--RANGLLEAFTIVAILAGTAL 158 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccch--hhhhHHHHHHHHHHHHHHHH
Confidence 66655444433333222 1235677777888999999998888888999999999999 77888888888888777776
Q ss_pred HHHcc
Q 013324 370 LQSYQ 374 (445)
Q Consensus 370 ~~~~~ 374 (445)
.+.+.
T Consensus 159 ~~~l~ 163 (1146)
T PRK08633 159 FSFLF 163 (1146)
T ss_pred HHHHH
Confidence 66554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=85.89 Aligned_cols=139 Identities=10% Similarity=0.051 Sum_probs=89.4
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~ 100 (445)
+.+....+.+..+.............|.|.++. |.++...++......+...+..|++|+++||+|+||.+.+ +.+..
T Consensus 226 ~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~-g~~~~ 304 (448)
T PRK09848 226 RNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI-GALLG 304 (448)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHHH
Confidence 344455555555666565566666677777776 8877666665555567778899999999999999987554 33333
Q ss_pred HHHHHHHH-------------------HHHhhhhhHhhhhhhcccCc------cccchhhhHHHHHHHHHHHHHHHHHHH
Q 013324 101 AVSFSSVF-------------------GWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLSLYAIAFI 155 (445)
Q Consensus 101 ~~~~~~~~-------------------~~~~~~~~~~al~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~ 155 (445)
.++..... +......+..++..|..+.+ ++++...+..+....+|..+++.+.+.
T Consensus 305 ~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 305 TCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222211 22333444455656655422 234777888888888898888888877
Q ss_pred HHHhhc
Q 013324 156 VFSVST 161 (445)
Q Consensus 156 l~~~~~ 161 (445)
++...+
T Consensus 385 ~l~~~G 390 (448)
T PRK09848 385 ILGLSG 390 (448)
T ss_pred HHHHcC
Confidence 776543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00032 Score=68.37 Aligned_cols=294 Identities=11% Similarity=-0.006 Sum_probs=143.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----------------HHHhhhhhHhhhhhhcccCc
Q 013324 65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----------------GWAATQVAHMSMVNCITLNS 128 (445)
Q Consensus 65 ~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----------------~~~~~~~~~~al~~~~~~~~ 128 (445)
.++-....++...+.+.+.|+.|.|-. +..+......-....+ +.+...........+- .++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~-lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~-st~ 133 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWA-LVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSN-STR 133 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHH-HHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhc-CCh
Confidence 344445566777889999999999765 4444444443322222 1111122222222222 235
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHH--------------HHHHHHHHHHHHHHHHHHhccc
Q 013324 129 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY--------------RWIAYSSIFIGCCFVGIFLSRT 194 (445)
Q Consensus 129 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~i~~~~~~~~~ 194 (445)
+++.+..++.+.....+.++|++....+...-...+. ...+- ...+.+...+.++..+.. ...
T Consensus 134 ~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~-~~~ 210 (461)
T KOG3098|consen 134 ETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAI--ITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINF-DFL 210 (461)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccc--cccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhe-eec
Confidence 5667777777777677777765443332221110100 11111 111111111111111111 111
Q ss_pred ccccccccccCC-cchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccch-hhhHHHHHHHH
Q 013324 195 EEPRLKMGLRGN-SHARISWA---YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQS-AKALVPAIIYI 267 (445)
Q Consensus 195 ~e~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~-~~~~~~~~~~~ 267 (445)
+.+.....++.. ....+.++ +++++++...+.................+|..+.-. .+.+.. ..+......++
T Consensus 211 p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~ 290 (461)
T KOG3098|consen 211 PSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGL 290 (461)
T ss_pred CccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhH
Confidence 221111111111 23333333 345566655555554444444444555566554433 222222 23444555567
Q ss_pred HHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccC-c---------------hhHHHHHHHHHHHHHHhHh
Q 013324 268 CSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPM-N---------------MSAFMYVLAIFVGIANALM 329 (445)
Q Consensus 268 ~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~l~g~~~~~~ 329 (445)
+.++++...+.++|+.||+ ++.+.++..+-...+++...-.+ + ......+...+.|++-+..
T Consensus 291 g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~ 370 (461)
T KOG3098|consen 291 GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACF 370 (461)
T ss_pred HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHH
Confidence 7777777776666666666 45566666655555544433211 0 1335566677889999988
Q ss_pred hhhHhhhcccccccccccchhHHhHHHHHHHHHHHHH
Q 013324 330 MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIA 366 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~ 366 (445)
+...+...+...|++ +. .++++..+-+.++..++
T Consensus 371 ~t~~~~ii~~~~~~~-~~--~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 371 NTQRYVIIALLYPDD-RA--QAFSLFKFYQSVASCVA 404 (461)
T ss_pred HHHHHHHHHHHhcCc-hH--HHHHHHHHHHHHHHHHH
Confidence 888888887777443 33 45666666666665544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-06 Score=89.39 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc------
Q 013324 236 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP------ 308 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~------ 308 (445)
..++.....+.+++++++++.+.+++.....++..++.++.+++ +|..| |+.+.++.++++++.++..+.+
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r--~~~i~~g~ll~~lg~ll~alphf~~~~y 125 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHR--PIVIGIGCAIMGLGSFLLSLPHFLSGRY 125 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCc--ceEEEecHHHHHHHHHHHhChHHhcCCc
Confidence 33344444455677789999988988888888888888887764 33332 5667777777777766655432
Q ss_pred ----------------------C--------------------c-hhHHHHHHHHHHHHHHhHhhhhHhhhccccccccc
Q 013324 309 ----------------------M--------------------N-MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL 345 (445)
Q Consensus 309 ----------------------~--------------------~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 345 (445)
. + ....+++..++.|+|.+...+....+..+..|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~ 205 (633)
T TIGR00805 126 SYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN 205 (633)
T ss_pred cccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc
Confidence 0 0 13345677889999999999988999999999999
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 346 SGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 346 ~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
++ .+.++.+....+|..+|+.+.+.+.
T Consensus 206 ~~--~~~~i~~~~~~iG~~lG~llgg~l~ 232 (633)
T TIGR00805 206 SP--LYIGILESIAVFGPAFGYLLGSFCL 232 (633)
T ss_pred cH--HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99 8888888888888888877666544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-05 Score=76.84 Aligned_cols=142 Identities=8% Similarity=0.011 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHhhhhh--hHHHHHHHHHHHHHHHHH
Q 013324 228 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRL--KAYYSAGGVLWVFCGAGI 304 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~-~~~~~~r~--~~~~~~~~~~~~~~~~~~ 304 (445)
.++.+..+.+....++|.|+++ .|.+..+.+.......+...+++++.++ .+|+.|+. ++.+.+..... . ...
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~-~~~ 87 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A-VAF 87 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H-HHH
Confidence 3555556667778889999966 6999999999888888888888888776 35555533 23322222211 1 112
Q ss_pred hhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 305 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.. ..++.|.+++...+.|++.+...+...++..+..+++.+..+......+++..+|+.+++.+.+.++
T Consensus 88 ~~-~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g 156 (382)
T PRK11128 88 WF-GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG 156 (382)
T ss_pred HH-hcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 2346777677777778877776665555544433333332223333334444444444444444443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.4e-06 Score=81.90 Aligned_cols=139 Identities=19% Similarity=0.153 Sum_probs=97.4
Q ss_pred CchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
.++|....+....+...+.....++..++|.++. |.+ ...+.+..+..+...+..|++++++||+||||.+..... .
T Consensus 222 ~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~-~ 299 (428)
T PF13347_consen 222 FRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL-L 299 (428)
T ss_pred cccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH-H
Confidence 3455566667777777888888888889999987 766 677888889999999999999999999999998654433 3
Q ss_pred HHHHHHHHH-------------------HHHhhhhhHhhhhhhcccCc------cccchhhhHHHHHHHHHHHHHHHHHH
Q 013324 100 VAVSFSSVF-------------------GWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLSLYAIAF 154 (445)
Q Consensus 100 ~~~~~~~~~-------------------~~~~~~~~~~al~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~ 154 (445)
.+.+....+ +++.......++.+|..+.+ ++.+...+.......++..++..+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 300 AALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 333332222 22233333445666666532 23466777777788888888888887
Q ss_pred HHHHhhc
Q 013324 155 IVFSVST 161 (445)
Q Consensus 155 ~l~~~~~ 161 (445)
.++...+
T Consensus 380 ~~l~~~G 386 (428)
T PF13347_consen 380 LLLALVG 386 (428)
T ss_pred HHHHHhC
Confidence 7776654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-05 Score=78.23 Aligned_cols=121 Identities=11% Similarity=0.135 Sum_probs=83.3
Q ss_pred HHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 013324 247 VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIA 325 (445)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 325 (445)
+.++.|.+....+.......++..++.+..+++ +|+++ |+.+..+..+..++.....+. ++.+.+++.-++.|++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr--r~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~Gi~ 117 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGR--RPVLITGALIFTLACAATLFT--TSMTQFLIARFIQGTS 117 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCc--hHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 456678888887877787888888888887764 44433 667777777777666655553 3666777777888888
Q ss_pred HhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 326 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.+...+.......+..++++++ ...+..+....+|..+|+.+.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~lg~~l 163 (413)
T PRK15403 118 ICFIATVGYVTVQEAFGQTKGI--KLMAIITSIVLVAPIIGPLSGAAL 163 (413)
T ss_pred HHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765555556666667777766 556666666677776666554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=75.82 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=59.4
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWH 93 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~l 93 (445)
+.+..+...+..|........+..+++.|++|. |.++++.+...+.+.....++..+.+++.||+|+||...
T Consensus 138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~ 212 (310)
T TIGR01272 138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA 212 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 444445555666666667778888999999863 899999999999999999999999999999999988643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00018 Score=74.12 Aligned_cols=144 Identities=13% Similarity=0.034 Sum_probs=88.0
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHHHHHHHHHHHHH-------------
Q 013324 44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVF------------- 108 (445)
Q Consensus 44 ~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~ll~~~i~~~~~~~~~~------------- 108 (445)
...+..|+++. |.+.+.+..+...+....-+...+.|+++|+ +||+|..++ +.+...++..+..
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~-~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILY-LSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhccCcccccchHH
Confidence 34566777665 9999999999999999999999999999997 798887443 3333333322211
Q ss_pred ------------HHHhhhhhHhhhhhhcccCcc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 013324 109 ------------GWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 174 (445)
Q Consensus 109 ------------~~~~~~~~~~al~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 174 (445)
+.+.+-....+...|..++++ +|.....+...+.++|++++..+.+.+-.....++ ...+|..
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg---~~~~~~~ 162 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG---CQDCYPL 162 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cCcchHH
Confidence 111122233444455554322 24455566666677777776666555432211100 1346888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013324 175 IAYSSIFIGCCFVGIFL 191 (445)
Q Consensus 175 ~~~~~~~~~~i~~~~~~ 191 (445)
.|.+.++..++.++.+.
T Consensus 163 aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 163 AFGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777666665554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=89.48 Aligned_cols=155 Identities=13% Similarity=0.049 Sum_probs=92.9
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHhhhcccc-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 013324 214 AYWFKKILYYQVALVYMLTRLVVNVSQA---YLAFY-VINDLRMGQ-SAKALVPAIIYICSFIVSILLQEMAWTGQRL-- 286 (445)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~-- 286 (445)
..++++++|..++...++..+..+.... ++..| +.+..+.+. ...++......+..++.+++.|. +.||+
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~---laDr~~r 81 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQ---LADKYDK 81 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHh---hhhhccH
Confidence 3467788777766665555544332221 12222 222222221 23445555556666677777774 44444
Q ss_pred hHHHHH--HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHH
Q 013324 287 KAYYSA--GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCG 364 (445)
Q Consensus 287 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~ 364 (445)
|+++.. ...+.........+. .++.|.+++..++.|++.+...|...++..+..++++++ .++|+.+.+..+|..
T Consensus 82 k~~~~~~~~~~~~~~~~~~~~~~-~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~--~a~~~~~~~~~ig~~ 158 (1140)
T PRK06814 82 AKLAKILKFAEIGIAALAIYGFH-LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELL--GANALVEAGTFIAIL 158 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccc--hhhHHHHHHHHHHHH
Confidence 333221 111111111112221 246788888889999999999999999999998989888 778888888888888
Q ss_pred HHHHHHHHcc
Q 013324 365 IAVYVLQSYQ 374 (445)
Q Consensus 365 i~~~l~~~~~ 374 (445)
+|+.+.+.+.
T Consensus 159 igp~l~g~l~ 168 (1140)
T PRK06814 159 LGTIIGGLAT 168 (1140)
T ss_pred HHHHHHHHHH
Confidence 8887777665
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-05 Score=78.06 Aligned_cols=117 Identities=10% Similarity=0.087 Sum_probs=85.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCc----hhHHHHHHHHHHHHHHh
Q 013324 253 MGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN----MSAFMYVLAIFVGIANA 327 (445)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~ 327 (445)
.+....+.+.....++.+++.++.+++ +|++| |+.+..+.++..++..+..+.+.. +.+.+++..++.|++.+
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr--r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR--KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 344455677777788888888888854 33333 666667766666665554443311 24567778889999999
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
...+....+..+.+|++.|| ...++.+....+|..+++.+...+
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRG--AMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred hhhHHHHHHHHHhcChhhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 888888888888888887765443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-05 Score=73.04 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=107.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~ 106 (445)
|...+..-..++.++++..++|.++.|.|+|+.+.|.+.+...+.........-.+++|..-+|++.+.....+.++...
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G 290 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG 290 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 33444444567888899999999999999999999999999999999999999999998776677665555555444433
Q ss_pred H-H-------HH--------HhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 013324 107 V-F-------GW--------AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 170 (445)
Q Consensus 107 ~-~-------~~--------~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (445)
. + .| +....-...++.+.++++++-++.+++.+...++-...++.+.+.+.+. ..
T Consensus 291 ~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa---------~g 361 (395)
T COG2807 291 LLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA---------TG 361 (395)
T ss_pred HHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh---------cC
Confidence 2 2 12 1111122344566667777777888877776555555555555555432 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 013324 171 QYRWIAYSSIFIGCCFVGIFLSRTEE 196 (445)
Q Consensus 171 g~~~~~~~~~~~~~i~~~~~~~~~~e 196 (445)
+|+..........++..+..+..-|+
T Consensus 362 sw~~~~~~l~~~~i~m~i~Gl~a~r~ 387 (395)
T COG2807 362 SWSAPLVLLALATLLMLIFGLRAGRN 387 (395)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcchh
Confidence 67777666655555555555444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0031 Score=62.28 Aligned_cols=180 Identities=10% Similarity=0.031 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHHHHhh-hhhhhhhhhccCCchHHHHHHHHHHHHHHHH-HH--------------------------
Q 013324 57 SPRGAAAVMLSGQIADGFA-TIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-VF-------------------------- 108 (445)
Q Consensus 57 s~~~~g~l~~~~~i~~~i~-~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~-~~-------------------------- 108 (445)
+...+.++-+...+..++. .|+.+++++|++|+|.+-..... +...... .+
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~-F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~ 119 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP-FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGF 119 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH-HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhh
Confidence 3467888888887877777 99999999999999874432221 1111111 00
Q ss_pred --------------------HHHhhhh--hHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 013324 109 --------------------GWAATQV--AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 166 (445)
Q Consensus 109 --------------------~~~~~~~--~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 166 (445)
.|+.+.+ -..+.++|.+. .+|-.|..++...+.++|.++++.+...+.......+.
T Consensus 120 ~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t-~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~- 197 (472)
T TIGR00769 120 MGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT-IDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGP- 197 (472)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-
Confidence 1222222 23456677775 66777888888888888888887766665432111100
Q ss_pred chhhHHH----HHHHHHHHHHHHHHHHHhccccc----cc------ccccccCCcchHHHHHHHHhchHHHHHHHHHHHH
Q 013324 167 DLENQYR----WIAYSSIFIGCCFVGIFLSRTEE----PR------LKMGLRGNSHARISWAYWFKKILYYQVALVYMLT 232 (445)
Q Consensus 167 ~~~~g~~----~~~~~~~~~~~i~~~~~~~~~~e----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (445)
....|. ..+.+.++.+++...+....-++ ++ ++++++.+.+..+.++.++|+|..+.+.+..+++
T Consensus 198 -~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y 276 (472)
T TIGR00769 198 -GVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAY 276 (472)
T ss_pred -ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 122332 23333333333322222211111 11 1111223445678899999999988777776666
Q ss_pred HHHHHHHH
Q 013324 233 RLVVNVSQ 240 (445)
Q Consensus 233 ~~~~~~~~ 240 (445)
..+.+...
T Consensus 277 ~~~~nlve 284 (472)
T TIGR00769 277 GISINLVE 284 (472)
T ss_pred HHHHHHHH
Confidence 65555443
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-05 Score=65.74 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccc
Q 013324 266 YICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED 344 (445)
Q Consensus 266 ~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 344 (445)
.++.+++++..+++ +|..+ |+.+..+.....++....... ++.+......++.|++.+...+....+..+..|++
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGR--KPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred hhHHHHHHhhHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 45566667776653 33332 556666666666555544443 35666677778899999888888888888888888
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 345 LSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 345 ~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+++ ...+..+....+|..+++.+.+...
T Consensus 84 ~~~--~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 84 ERG--VALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred hhh--HHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 888 8888999999999999888877665
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=79.51 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCC
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH 88 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Gr 88 (445)
-.++..+.+++.+........|+|.|+.|. |.+-.+.|++.++..+...+...+.|.++||.-+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677899999999999999999999998 9999999999999999999999999999998644
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-05 Score=73.52 Aligned_cols=129 Identities=8% Similarity=0.002 Sum_probs=81.6
Q ss_pred HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHhhh----hhhHHHHHHHHHHHHHHHHHhhcc-CchhHH
Q 013324 241 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQ----RLKAYYSAGGVLWVFCGAGILILP-MNMSAF 314 (445)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~-~~~~~~----r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 314 (445)
...|.+.+ +.|.+..+.+..... .+...+ .++.++ .||+.. |+|..+..+.++.++....+.+.. ..+.+.
T Consensus 9 ~~~~~~~~-~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~ 85 (356)
T TIGR00901 9 NTLPYWLR-SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL 85 (356)
T ss_pred hHHHHHHH-HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 34555555 569999888877543 333333 555555 355521 213344555555555544454443 234455
Q ss_pred HHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 315 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 315 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+....++.+++.+...+...++..+..|+|+++ .+.+..+.+..+|..+++.+...+.
T Consensus 86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELG--YGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhc--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555667777777777788888888889999 7888888888888888877765544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-05 Score=76.59 Aligned_cols=140 Identities=13% Similarity=-0.003 Sum_probs=80.7
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
++..+......+.............+.|.++.--.+...+.+.....+...+..|++++++||+||||.+..........
T Consensus 228 n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 228 NSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVIL 307 (444)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444544223445556666777888888999999999999999865433222211
Q ss_pred HHHHHH------------------HHHhhhhhHhhhhhhcccCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013324 103 SFSSVF------------------GWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 103 ~~~~~~------------------~~~~~~~~~~al~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 158 (445)
.....+ +.........++++|..+.+| +.+...+.......+|..+++.+++.+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 308 SALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 223333445567777664221 22445667777778888898888888877
Q ss_pred hhcc
Q 013324 159 VSTA 162 (445)
Q Consensus 159 ~~~~ 162 (445)
..+.
T Consensus 388 ~~Gy 391 (444)
T PRK09669 388 WVDY 391 (444)
T ss_pred HcCC
Confidence 6543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.7e-05 Score=72.77 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=91.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~ 103 (445)
....|-+..+...=..+.+...-..|-.+ +|++.+++.++.....+..+++..++|+|.||+|.|++......+....+
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 33445555555544455666677888884 59999999999999999999999999999999999987554444444444
Q ss_pred HHHHH------------HHHhhhhhH----hhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013324 104 FSSVF------------GWAATQVAH----MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 159 (445)
Q Consensus 104 ~~~~~------------~~~~~~~~~----~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 159 (445)
....+ ..+....|. -++...+.+ ++|.++..+++....-.++..++...+.+.+.
T Consensus 333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp-~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVP-KGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCC-CccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 33333 112222233 344566665 66677888888888888888887776666543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00014 Score=72.08 Aligned_cols=145 Identities=16% Similarity=0.110 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HH----hhhhhhHHH-HHHHHHHH
Q 013324 225 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AW----TGQRLKAYY-SAGGVLWV 298 (445)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~----~~~r~~~~~-~~~~~~~~ 298 (445)
+....+-.++++.....+.++|++ .+|.+....+.+.....+..++..++.|.+ || ++| ||.+ ..+.....
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR--Rrp~il~g~~~~~ 85 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR--RRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC--hHHHHHHHHHHHH
Confidence 334444455667777778888775 579998888888777777777777777754 32 222 4444 44455555
Q ss_pred HHHHHHhhccC------------chh---HHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHH
Q 013324 299 FCGAGILILPM------------NMS---AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 363 (445)
Q Consensus 299 ~~~~~~~~~~~------------~~~---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~ 363 (445)
++..++.+... +.. +..++...+..++.....+...++..+.+|++++..+.+++..+....+|+
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 55555444321 001 222333345556777777788889999888775432267888888888888
Q ss_pred HHHHHHHHH
Q 013324 364 GIAVYVLQS 372 (445)
Q Consensus 364 ~i~~~l~~~ 372 (445)
.+|..+-+.
T Consensus 166 ilg~~~g~~ 174 (477)
T TIGR01301 166 VLGYAAGAY 174 (477)
T ss_pred HHHHHHHHH
Confidence 877765443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00017 Score=73.01 Aligned_cols=128 Identities=5% Similarity=-0.007 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhcc----Cch
Q 013324 238 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP----MNM 311 (445)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~----~~~ 311 (445)
.+..+.+ .+++++|.+..+.+.+...... .....+..| ++.||+ |+.+.++.++..++.++..+.. ..+
T Consensus 45 ~fsv~s~-~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G---~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s 119 (591)
T PTZ00207 45 AFNLISG-AMQARYNLTQRDLSTITTVGIA-VGYFLLPYS---FIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS 119 (591)
T ss_pred HHHHHHH-HHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHH---HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 3344444 5677789998877765544222 122333445 455555 7788888888888877766641 146
Q ss_pred hHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 312 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.+.+.+..++.|+|.+...+.......+.+| +++| .+.|+......+|+++.+.+...+
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG--~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG--AVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888899988777665555555565 5678 889998888888888655544443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-05 Score=78.15 Aligned_cols=119 Identities=9% Similarity=0.131 Sum_probs=90.5
Q ss_pred HHhhhccc---chhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 013324 247 VINDLRMG---QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 322 (445)
Q Consensus 247 ~~~~~g~~---~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (445)
+.++.+.+ ....++......++.++++++.+++ +|+++ |+.+.++.++..++.+...+. ++.+.+++..++.
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Gr--r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~ 190 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGR--KKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFRLLV 190 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccc--hHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHH
Confidence 45567787 6777888888889999999988864 33333 667777777777666665553 3677778888899
Q ss_pred HHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHH
Q 013324 323 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
|++.+...+....+..+..|+++++ ...++......+|..+++.+..
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKKQRA--IVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred HhhccchHHHHHHHhheecChhhhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998988999999999999998 7777777777777777766543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00017 Score=63.85 Aligned_cols=293 Identities=10% Similarity=0.043 Sum_probs=140.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-HH------------HH-
Q 013324 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-VF------------GW- 110 (445)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~-~~------------~~- 110 (445)
+|+-..+...|....++|.+...+.-...+...+.|.|+||-||||.-. .+.+...+ +. +-
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracv-----tycitYiLsCiTKhSpqYkVLmVGR~ 132 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-----TYCITYILSCITKHSPQYKVLMVGRV 132 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhcccccee-----eehHHHHHHHHhhcCCceEEEeehhh
Confidence 3443444556899999999988888888888899999999999999632 22222222 11 11
Q ss_pred ------HhhhhhHhhhhhhcccCccccchhhhHH--------HHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 013324 111 ------AATQVAHMSMVNCITLNSTSRVVLTSCR--------NAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 176 (445)
Q Consensus 111 ------~~~~~~~~al~~~~~~~~~~r~~~~~~~--------~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 176 (445)
+.......++.... +.++|+.-.-|. ..+..+-.+++++.+-.+.++++-+. ...+....
T Consensus 133 LGGiaTsLLFSaFEsWliaE--Hnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGP----VAPFdAAa 206 (454)
T KOG4332|consen 133 LGGIATSLLFSAFESWLIAE--HNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGP----VAPFDAAA 206 (454)
T ss_pred hhhHHHHHHHHHHHHHHHHH--hhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCC----CCchHHHH
Confidence 11112222333222 223343221111 12333334455555555555443211 11222211
Q ss_pred HHHHHHHHHHHHHHhccccccccccccc-C-CcchHHHHHHHHhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcc
Q 013324 177 YSSIFIGCCFVGIFLSRTEEPRLKMGLR-G-NSHARISWAYWFKKILYYQVALVYMLT-RLVVNVSQAYLAFYVINDLRM 253 (445)
Q Consensus 177 ~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ 253 (445)
.+-.+...+......|.-..+.++ + ....+...+.+..+++...+.-.-.++ ...+.....|.|..--+.-+.
T Consensus 207 ----cfLaigmAvil~~W~ENygdps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~i 282 (454)
T KOG4332|consen 207 ----CFLAIGMAVILSSWSENYGDPSENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI 282 (454)
T ss_pred ----HHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccC
Confidence 111111111112223321111110 0 011223334455566544332222221 112222233333332222222
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhc----c-CchhHHHHHHHHHHHHHHh
Q 013324 254 GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL----P-MNMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 254 ~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~g~~~~ 327 (445)
+ -|.++....+++++|+-+..++ .+...|....+.+.++...+...+.... + ..++..-++...++-...|
T Consensus 283 P---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvG 359 (454)
T KOG4332|consen 283 P---HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVG 359 (454)
T ss_pred C---chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHh
Confidence 2 2567777778888888776543 2222222344555555544443333221 1 1234455666777888889
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHH
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK 360 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 360 (445)
..+|...-+-.+..|++.+. +++|+.+.
T Consensus 360 lfwPSimkmRsqyIPEears-----timNfFRv 387 (454)
T KOG4332|consen 360 LFWPSIMKMRSQYIPEEARS-----TIMNFFRV 387 (454)
T ss_pred hcchHHHHHHHhhCCHHHHh-----hhhhheec
Confidence 99999988888888877765 35566554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00013 Score=65.48 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=70.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----------------
Q 013324 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF---------------- 108 (445)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~---------------- 108 (445)
.|-|...+++|+|.++...+-....+...+ .++.|.+.||+|+|.+ ++++......+....+
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~-l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~ 100 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVV-LLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC 100 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence 455555666699999999999999999887 5888999999999766 5556666666655544
Q ss_pred HHH------hhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHH
Q 013324 109 GWA------ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 150 (445)
Q Consensus 109 ~~~------~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 150 (445)
.+. .......+++..+.+-|++|+.+.++.-...++++.+-.
T Consensus 101 ~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t 148 (250)
T PF06813_consen 101 LFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFT 148 (250)
T ss_pred HHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHH
Confidence 000 001111233333333478899999998877776665543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00026 Score=65.16 Aligned_cols=240 Identities=12% Similarity=0.049 Sum_probs=120.5
Q ss_pred HhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 013324 111 AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 190 (445)
Q Consensus 111 ~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 190 (445)
++..+.+.+.+-... |++++.++.+......-.|-..+...+..+++. +...+.....+...-..+..++.
T Consensus 109 tAaEIAYysYIYs~V-d~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~--------~~~sy~~LN~ISL~~~~ia~~~A 179 (433)
T KOG3810|consen 109 TAAEIAYYSYIYSKV-DPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL--------ETLSYTTLNYISLAEVTIAVLLA 179 (433)
T ss_pred HHHHHhhhheeeeec-CHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh--------cccchhhhchhhHHHHHHHHHHH
Confidence 355666666654444 477788888887777667777777777766653 12344444333222222222222
Q ss_pred hccccccccc------ccc---------cCCcch-----------HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 191 LSRTEEPRLK------MGL---------RGNSHA-----------RISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 244 (445)
Q Consensus 191 ~~~~~e~~~~------~~~---------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
.+ .|.++++ +++ +.+.+. .+++.+..+||+...-.+-..+...+++-. .++.
T Consensus 180 ~f-LP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV-~nY~ 257 (433)
T KOG3810|consen 180 LF-LPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQV-TNYT 257 (433)
T ss_pred hh-CCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHH-HHHH
Confidence 22 2222110 000 011111 123334456666443333333333333322 2333
Q ss_pred HHHHhhhc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHH
Q 013324 245 FYVINDLR--MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIF 321 (445)
Q Consensus 245 ~~~~~~~g--~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (445)
..+-++.. -.....|..-.+..+.+.++.+..|.++-..+|+ +..+.++.+.-+. +++......+.|+..+..++
T Consensus 258 Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~ag--llf~m~~t~~Iw~~Ya~yvl 335 (433)
T KOG3810|consen 258 QILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAG--LLFIMAQTQHIWVCYAGYVL 335 (433)
T ss_pred HHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhh--hhhhhhcccceehhhhhHHH
Confidence 33333221 1122334444444444555666666553333444 3344444333322 33333345578888999999
Q ss_pred HHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHH
Q 013324 322 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI 365 (445)
Q Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i 365 (445)
+........+.+..-++..-.+|.-| ..+|++.+..-+-+.+
T Consensus 336 fr~~y~l~itiA~~~iA~nL~~e~~g--LvFGiNTFvAl~lQsi 377 (433)
T KOG3810|consen 336 FRVIYQLTITIATFQIARNLSSELFG--LVFGINTFVALILQSI 377 (433)
T ss_pred HHhhHhhhhhHHHHHHHHhhhhhhhe--eeeehHHHHHHHHHHh
Confidence 88888777766655555555677777 9999998876654443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=7e-05 Score=72.49 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=99.2
Q ss_pred Hhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh---hH
Q 013324 217 FKKI-LYYQVALVYMLTRLVVNVSQAYLAFYVINDLR----MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL---KA 288 (445)
Q Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~---~~ 288 (445)
+++| .++.++..-+.-.++++++-..+..|+..+.+ ++...+.-.......---+..++.| ++.||. |+
T Consensus 17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG---~laDr~LG~~~ 93 (498)
T COG3104 17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGG---WLADRVLGTRR 93 (498)
T ss_pred CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHH---HHHHHhcchhH
Confidence 4444 45566666677778888888888888777666 8776544333333222222223333 445555 78
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHH
Q 013324 289 YYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVY 368 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~ 368 (445)
.+..|.+++.++.+++..........+++...+.++|.|..=++...+..+..|+++.-+--.+++..++.++|+.+++.
T Consensus 94 tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence 89999999999988887653134455567777788999987777776666553322211112355666667788888888
Q ss_pred HHHHccccCC
Q 013324 369 VLQSYQSMSP 378 (445)
Q Consensus 369 l~~~~~~~~~ 378 (445)
+.+++..+.+
T Consensus 174 i~~~~~~~~g 183 (498)
T COG3104 174 ITGLLAINYG 183 (498)
T ss_pred HHHHHHHhhC
Confidence 7777764433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00021 Score=71.25 Aligned_cols=139 Identities=6% Similarity=0.026 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhh---hHHHHHHHHHHHHHHHHH
Q 013324 229 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVFCGAGI 304 (445)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~---~~~~~~~~~~~~~~~~~~ 304 (445)
-+..+........|++.|+.+..|.++...|.+..+.-+-..+.-++.|.+ ||...|+ |+.+.++....++++.++
T Consensus 18 ~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll 97 (460)
T PRK11462 18 DAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA 97 (460)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH
Confidence 333445556667899999999999999888877777767777777777764 4322222 556667766667666665
Q ss_pred hhccCch----hHHHHHHHHHHHHHHhHhhhhHhhhcccccc-cccccchhHHhHHHHHHHHHHHHHHHH
Q 013324 305 LILPMNM----SAFMYVLAIFVGIANALMMVTGISMQNVLVG-EDLSGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 305 ~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
+..+..+ ..+..+..+++.+++.....+-.++..+.++ +++|. ...+....+..+|..+++.+
T Consensus 98 f~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt--~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 98 YSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRI--SLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 5443211 2344555556677777766666666666644 55555 66777777777766655444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00054 Score=64.63 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc-CchhHHH
Q 013324 238 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFM 315 (445)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 315 (445)
...--+.+.+++.++.+..+++.+......+-.+.++..+++ +|++. |+.++.|+.++++++.+++-.. ......+
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gy--k~gi~lgL~l~avg~~lF~pAa~~~~y~~F 107 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGY--KAGIVLGLLLYAVGAALFWPAASSKSYGFF 107 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhh--HHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 344556677788899999998888877777777777777753 44443 8889999999998877664222 2244455
Q ss_pred HHHHHHHHHHHhHhhhhHhhhccccccccccc--chhHHhHHHHHHHHHHHHHHHHHH
Q 013324 316 YVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQ 371 (445)
Q Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~ig~~i~~~l~~ 371 (445)
+....+.+.|.+........++...-+++... ....-++++++..+|..+++.++.
T Consensus 108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66667888888887776666666554443322 234455555555455444444443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00023 Score=71.34 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHh----hhhhhHHHHHHHHHHHHHH
Q 013324 227 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT----GQRLKAYYSAGGVLWVFCG 301 (445)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~----~~r~~~~~~~~~~~~~~~~ 301 (445)
+..+...........|++.|+.+..|+++...|.+..+.-+...+..++.|.+ ||. +|| |+.+..+....++++
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grr-rp~il~g~i~~~i~~ 91 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKF-KPWILIGTLANSVVL 91 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCc-chhHhhhhHHHHHHH
Confidence 33344455566677899999999999999888888777777777777777764 422 222 566777777777665
Q ss_pred HHHhhccC-c---hhHHHHHHHHHHHHHHhHhhhhHhhhccccc-ccccccchhHHhHHHHHHHHHHHHHH
Q 013324 302 AGILILPM-N---MSAFMYVLAIFVGIANALMMVTGISMQNVLV-GEDLSGCAFVCGTLSFLDKMSCGIAV 367 (445)
Q Consensus 302 ~~~~~~~~-~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~ig~~i~~ 367 (445)
.+++..+. + ..++..+..++.++++.....+-.++..+.+ ++++|. ..++.......+|+.+.+
T Consensus 92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~--~l~~~~~~~~~ig~~~~~ 160 (473)
T PRK10429 92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRERE--QLVPYPRFFASLAGFVTA 160 (473)
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 55544321 1 1233444555667777777766667777765 455555 455554555555544443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.017 Score=57.35 Aligned_cols=220 Identities=11% Similarity=0.062 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHHHH-HhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------------------
Q 013324 55 GLSPRGAAAVMLSGQIAD-GFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------------------------- 108 (445)
Q Consensus 55 g~s~~~~g~l~~~~~i~~-~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------------------------- 108 (445)
..++..+..+=....+.. .+...+..+++||++|.|.+-.......+.-....+
T Consensus 54 ~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~ 133 (491)
T PF03219_consen 54 AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPG 133 (491)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccch
Confidence 346667777766454533 444678999999999999754433222221111111
Q ss_pred ---------------------HHHhhhhh--HhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHH-hhcccc
Q 013324 109 ---------------------GWAATQVA--HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-VSTAKT 164 (445)
Q Consensus 109 ---------------------~~~~~~~~--~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~ 164 (445)
.|+.+.++ +.....+.++ .+|-.+..+....+.++|.++++.+...+.. ......
T Consensus 134 ~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt-~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~ 212 (491)
T PF03219_consen 134 FKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT-VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLP 212 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 22222222 3455567664 6677788888888888888877766666554 111111
Q ss_pred ccchhhHHHH----HHHHHHHHHHHHHHHHhcc----cccccc------cccccCCcchHHHHHHHHhchHHHHHHHHHH
Q 013324 165 HADLENQYRW----IAYSSIFIGCCFVGIFLSR----TEEPRL------KMGLRGNSHARISWAYWFKKILYYQVALVYM 230 (445)
Q Consensus 165 ~~~~~~g~~~----~~~~~~~~~~i~~~~~~~~----~~e~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (445)
. ....|.. ...+..+.+++........ .++++. +++++.+.+.++.++.++|+|....+.+..+
T Consensus 213 ~--~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi 290 (491)
T PF03219_consen 213 A--GVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVI 290 (491)
T ss_pred c--ccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHH
Confidence 0 1233432 2222222223322222111 121111 1122334567788899999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccch---hhhHHHHHHHHHHHHHHHHHH
Q 013324 231 LTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQ 277 (445)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~ig~~l~~ 277 (445)
++....+......-..+++....+.. ..|.+....++.+++..++.+
T Consensus 291 ~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~ 340 (491)
T PF03219_consen 291 AYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSS 340 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666665444444444433222211 123333334444444444444
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0036 Score=60.89 Aligned_cols=156 Identities=8% Similarity=0.155 Sum_probs=82.1
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh---------
Q 013324 215 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQR--------- 285 (445)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r--------- 285 (445)
+++|.|+...+.+..+....++..-......=+.+ .|++.+..+....+..-..++.++..+++.+ .++
T Consensus 273 ~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li~~P~qii~~~~~~Kws~-g~~P~~~~~~~l 350 (544)
T PF13000_consen 273 KILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLIDFPFQIILPYYIGKWSA-GSPPLDVDNKAL 350 (544)
T ss_pred HHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHHhhhHHHHHHHHhhhhhc-CCCccccccccc
Confidence 34566777766666666666665555444444544 5898887776665555556666665554311 111
Q ss_pred --------h-h---------HHHHHHHHHH----HHHHHHHhhcc-Cc--hhHHH---HHHHHHHHHHHhHhhhhHhhhc
Q 013324 286 --------L-K---------AYYSAGGVLW----VFCGAGILILP-MN--MSAFM---YVLAIFVGIANALMMVTGISMQ 337 (445)
Q Consensus 286 --------~-~---------~~~~~~~~~~----~~~~~~~~~~~-~~--~~~~~---~~~~~l~g~~~~~~~~~~~~~~ 337 (445)
. | +....+...- .++.......+ .+ +.+.. ++..++..+..-.++....+.-
T Consensus 351 ~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFh 430 (544)
T PF13000_consen 351 PNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFH 430 (544)
T ss_pred cccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1122222111 11111112222 11 12222 2222344444455566677777
Q ss_pred ccccccccccchhHHhHHHHHHHHHHH----HHHHHHHHcc
Q 013324 338 NVLVGEDLSGCAFVCGTLSFLDKMSCG----IAVYVLQSYQ 374 (445)
Q Consensus 338 ~~~~~~~~~g~~~~~~~~~~~~~ig~~----i~~~l~~~~~ 374 (445)
.+..++.--| ++..+.|...++|+- +.-.+++.+.
T Consensus 431 arISDP~IGG--TYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 431 ARISDPAIGG--TYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred hhccCcccch--HHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 7777788888 999988888888854 3344555543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00027 Score=70.19 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=105.2
Q ss_pred HhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 013324 248 INDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIA 325 (445)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 325 (445)
.++.++...+.+....+..++-+++.+..+.+ .||+ .+.+....++..+..++-.. ..+.+..++..++.|+.
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L---~~r~~ls~~l~~~~~~w~~~~~~~~~--~~s~~~~ialr~llGl~ 147 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLL---GDRFPLSKGLSVSGILWGLFGFLTAA--VHSFPGLIALRFLLGLF 147 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHH---HHhCChHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHH
Confidence 35566777777777777888888888777743 4554 33333333333222222222 34778888999999999
Q ss_pred HhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccccCCccccCCCcccccccccCCCCCCHhHHH
Q 013324 326 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYIS 405 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (445)
.+..+|....+...-.+++++| .-.++++....+|+.+|+.+...+....+... ..
T Consensus 148 es~~wP~~~~~lg~wy~~~e~g--~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~----------------------~~ 203 (495)
T KOG2533|consen 148 ESGGWPGVVAILGNWYGKSERG--LRMGIWYASASLGNIFGGLIAYGVFKLNGSGG----------------------LA 203 (495)
T ss_pred hcccchHHHHHHHhhcChhhhh--hhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC----------------------cC
Confidence 9999999999999889999999 88999999999999999888776432111100 01
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHhccCCC
Q 013324 406 VTRFGLGLIPAICSLVSVAVTFTMKLHT 433 (445)
Q Consensus 406 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 433 (445)
+.+..+.+-..+..+.+++..++.|-+.
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecCCh
Confidence 3355565556666666666666666443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00074 Score=64.69 Aligned_cols=121 Identities=14% Similarity=0.100 Sum_probs=83.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhcc----C-chhHHHHHHHHHHHHHHh
Q 013324 253 MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILP----M-NMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~g~~~~ 327 (445)
+++...+.+.....++.++|++++|+++++..| |+++...++++.++.++..... + .-.+++...-.+.|+|.|
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR-K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR-KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 555666778888889999999999976333222 5555555555555554333221 1 123455566679999999
Q ss_pred HhhhhHhhhcccccccccccc--hhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 328 LMMVTGISMQNVLVGEDLSGC--AFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.-.|...+..+|...++.||. +..++.+.++...|..++-.+...+-
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe 208 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE 208 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh
Confidence 999999899999888899983 56677777777777777766665554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0018 Score=65.46 Aligned_cols=120 Identities=11% Similarity=0.083 Sum_probs=75.1
Q ss_pred HHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 013324 245 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 322 (445)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (445)
.++..+.|-++. ..++.....++..++.++.|+ ++|.+ |..++.+.++..++.+..... ++....+....+.
T Consensus 68 ~~I~~diG~~~~-~~w~~~~~~l~~av~~~~~G~---LSDlfGRr~~~i~g~~l~vvG~Iv~atA--~~~~~~iag~~l~ 141 (599)
T PF06609_consen 68 PYINADIGGSDN-WSWFSTAWTLASAVSFPFVGR---LSDLFGRRYFFIIGSLLGVVGSIVCATA--QNMNTFIAGMVLY 141 (599)
T ss_pred HHHHHhcCCCcc-chHHHHHHHHHHHHHHHhhHH---HHHHhcchHHHHHHHHHHHhHHHHhhcC--CcHHHHHHHHHHH
Confidence 345555666543 345666666777777777664 44444 556677777777776655543 3666678888999
Q ss_pred HHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 323 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
|+|.|.... .....++..|.|.|+ ...++......+....++.+...+
T Consensus 142 GvgaG~~~~-~~~~isEl~p~k~R~--~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 142 GVGAGVQEL-AALAISELVPNKWRG--LGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred HHhhHHHHH-HHHHHHHhcccchhh--hHhHHHHHHHHhhhcccHHHHHHh
Confidence 998876653 344467788888888 555555544444444555555444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.2e-05 Score=74.27 Aligned_cols=106 Identities=7% Similarity=-0.005 Sum_probs=81.6
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-----------------H--------
Q 013324 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-----------------F-------- 108 (445)
Q Consensus 54 ~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-----------------~-------- 108 (445)
.|.++.++|.+.....+...++....+++.+|++.|+.+. .+.+..+.+.... +
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~-~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFG-VTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 4999999999999999999999999999999999888744 3444444332110 0
Q ss_pred --HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013324 109 --GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 161 (445)
Q Consensus 109 --~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 161 (445)
++.....|...++.+..+ +++++...+......++|..+++.+++.+...++
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p-~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCP-SGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHccHHHHHHHhCC-CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444566677777777775 7778888998888889999999988888877654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00013 Score=68.35 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHh
Q 013324 252 RMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALM 329 (445)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 329 (445)
+.+..+.|++++..++..++..++.|. +.||+ |..+++|+..+..+.+++.+. ++.+..++.-.+.|+|.+..
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~---l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGN---LIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchh---hHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHHH
Confidence 344556788888888888888888775 34444 677899999999888888874 47778888889999999999
Q ss_pred hhhHhhhcccccccccc-c--chhHHhHHHHHHHHHHHHHHHHHHHcccc
Q 013324 330 MVTGISMQNVLVGEDLS-G--CAFVCGTLSFLDKMSCGIAVYVLQSYQSM 376 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-g--~~~~~~~~~~~~~ig~~i~~~l~~~~~~~ 376 (445)
.....++.++.+|++.+ | .|.+.+..+++.-+|..+|+.+=+..|+.
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~ 226 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS 226 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCc
Confidence 99889999888776664 6 23444445555555555555555555543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0003 Score=70.52 Aligned_cols=156 Identities=14% Similarity=0.063 Sum_probs=99.5
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHH-HHHHH
Q 013324 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA-GSVLV 100 (445)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~-~~i~~ 100 (445)
+.+..+.++.+.....+.......++|.|.++.|.+..+...++++..+.+.++.++.|+++|+...++.++.. +.+..
T Consensus 296 ~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 296 KDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA 375 (509)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence 34556677888888888888888899999998899999999999999999999999999999998855544433 33333
Q ss_pred HHHHHHHH-------------HHHhhhhhHhh----hhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013324 101 AVSFSSVF-------------GWAATQVAHMS----MVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 163 (445)
Q Consensus 101 ~~~~~~~~-------------~~~~~~~~~~a----l~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 163 (445)
+++...+. .++.....+.+ ...++. +.++-..+.++......++.++++.+.+.+.+.
T Consensus 376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~-g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~---- 450 (509)
T KOG2504|consen 376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV-GLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI---- 450 (509)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChhhcchHHHHHHHHhHHHHHcCcccceeeeec----
Confidence 33321111 11111111111 223443 356667778888777777777766555533221
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH
Q 013324 164 THADLENQYRWIAYSSIFIGCCFV 187 (445)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~i~~ 187 (445)
...|...|...++..++..
T Consensus 451 -----tg~Y~~~f~~~g~~~~~s~ 469 (509)
T KOG2504|consen 451 -----TGNYDHAFYFCGLCFLLSA 469 (509)
T ss_pred -----cCCeeeehhhcChHHHHHH
Confidence 2235555555555444443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00015 Score=70.79 Aligned_cols=118 Identities=14% Similarity=0.022 Sum_probs=76.9
Q ss_pred HHHHh-hhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhc---cCchhHHHHHHHH
Q 013324 245 FYVIN-DLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILIL---PMNMSAFMYVLAI 320 (445)
Q Consensus 245 ~~~~~-~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 320 (445)
+|.++ +.+.+....|++.+...++..++++..+.++....+.|+.++.+.++++++.++...+ +.+..+++++.-+
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~ 138 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARI 138 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 45544 3566777788888888889999998888654333333777888998888888777333 2336778888889
Q ss_pred HHHHHHhHhhhhHhhhcccc--cccccccchhHHhHHHHHHHHHHHHHH
Q 013324 321 FVGIANALMMVTGISMQNVL--VGEDLSGCAFVCGTLSFLDKMSCGIAV 367 (445)
Q Consensus 321 l~g~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~ig~~i~~ 367 (445)
+.|+|.+... ....+.+.. .++|.+. .+..+.++.+|..+||
T Consensus 139 l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA----~a~~~~~~vlg~ilGp 182 (488)
T KOG2325|consen 139 LTGVGVGNFA-VLRAYIADASTVEDRPRA----FAATSGGFVLGIILGP 182 (488)
T ss_pred HcCcCcccHH-HHHHHHHhccCccchHHH----HHHhhhHHHHHHHHhH
Confidence 9999987644 445555553 3444444 3333444445555544
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0043 Score=55.26 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=53.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccc--cccccc---
Q 013324 129 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP--RLKMGL--- 203 (445)
Q Consensus 129 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~--~~~~~~--- 203 (445)
++|+..+.+...+.++|.++..+ +.++.. + ........|++.+.+.+++..+.++.....-+|- ..+.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~i--pF~~~~-~--~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k 76 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNI--PFLISS-S--VVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEK 76 (267)
T ss_pred CccceeeeeccccchhhHHHHHh--hHHhcc-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccccc
Confidence 56777777777788888877543 233220 0 0011245699988777776665555544333321 111111
Q ss_pred -cCCcchHHHHHHHHhchHHHHHHHHHH
Q 013324 204 -RGNSHARISWAYWFKKILYYQVALVYM 230 (445)
Q Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (445)
+.+.+.+...++.+|+|.-|...+.+.
T Consensus 77 ~~~~~~~~~s~~~~LK~K~tw~w~~~Yg 104 (267)
T PF07672_consen 77 ENSTLSKKPSYKSILKEKETWKWILIYG 104 (267)
T ss_pred ccccccccchHHHHHccchHHHHHHHHH
Confidence 112234467789999999776655543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0026 Score=64.52 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhh
Q 013324 258 KALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 336 (445)
Q Consensus 258 ~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (445)
.+++.....+++.+++++.+++ ++++| |+.+.++.+...++.++..+.+ +.+.+.+.-++.|+|.|........+
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GR--k~~l~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGR--KKTLLLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhh
Confidence 3688888889999999998864 33333 6678888888888888777754 77888899999999999988888889
Q ss_pred cccccccccccchhHHhHHHHHHHHHHHHH
Q 013324 337 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIA 366 (445)
Q Consensus 337 ~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~ 366 (445)
..+..|++.|| ...+.......+|..++
T Consensus 167 ~sEiap~~~RG--~l~~~~~l~~~~Gi~~~ 194 (513)
T KOG0254|consen 167 ISEIAPAHIRG--TLVSLYQLFITIGILLG 194 (513)
T ss_pred HhhcCChhhhH--HHHHHHHHHHHHHHHHH
Confidence 99999999999 77777777777776666
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0033 Score=61.46 Aligned_cols=140 Identities=10% Similarity=0.150 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhh---hHHHHHHHHHHHHHHH
Q 013324 227 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVFCGA 302 (445)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~---~~~~~~~~~~~~~~~~ 302 (445)
..-+...........|+..|+.+..|.++..+|.+..+.=+...+.-++.|.+ +|...|+ |+.+..+..-.++.+.
T Consensus 19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 33344445566678899999999999999988888887777777888888864 5443333 6667777666665555
Q ss_pred HHhhccC----chhHHHHHHHHHHHHHHhHhhhhHhhhcccccc-cccccchhHHhHHHHHHHHHHHHHHH
Q 013324 303 GILILPM----NMSAFMYVLAIFVGIANALMMVTGISMQNVLVG-EDLSGCAFVCGTLSFLDKMSCGIAVY 368 (445)
Q Consensus 303 ~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~ig~~i~~~ 368 (445)
+.+..++ ......++..++.++++.+.+.+-.++..+.++ +++|. ...+.-..+..+|..+...
T Consensus 99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~--~l~s~R~~~~~~g~~l~~~ 167 (467)
T COG2211 99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERA--SLTSWRMVFASLGGLLVAV 167 (467)
T ss_pred HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 5555442 344566777788899998887666667666643 33333 4556656666666555433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0059 Score=54.97 Aligned_cols=125 Identities=15% Similarity=0.048 Sum_probs=73.7
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhcc-----CchhHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP-----MNMSAF 314 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 314 (445)
.+.+.+++.+|++.++...+.....++.-+| +..| -..|+. +..+.+|.+...+++..++... ..+.|.
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G---~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~ 98 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAG---LLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL 98 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHH---HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence 3444567789999988777766666665543 5555 345555 6667888888888887776542 134566
Q ss_pred HHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 315 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 315 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
+.+...+.|.+....+........+.+| ++|| .+.|+.--...+++++-..+-..+
T Consensus 99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG--~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 99 MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRG--TVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccC--ceehhhhHHHHhHHHHHHHHHHHH
Confidence 5555555556555444333333334455 5788 666654444444444444444333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.15 Score=49.24 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHH
Q 013324 310 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 370 (445)
Q Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~ 370 (445)
++.|.+++..+..|+..|....++...+.+..++++|. .+.|..+++..+|..+++.+.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~RE--Fslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDRE--FSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHhhHHHHHHHHHH
Confidence 36777777788889988988888888888788888888 788888888888888877654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.11 Score=47.70 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH-HHHHH
Q 013324 32 GHMLNDITAACWFTYLLLFLTDIGLSP--RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-FSSVF 108 (445)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~g~s~--~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~-~~~~~ 108 (445)
..+.............+.+..+.+.+. ...+++.+.+.+...+..++.|+++||+|||+.++..... ...+ ....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~ 88 (338)
T COG0477 10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL-FLLGTLLLAL 88 (338)
T ss_pred HHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH-HHHHHHHHHh
Confidence 333334555566667788888876655 5899999999999999999999999999998764433221 1111 11110
Q ss_pred ------------------HHHhhhhhHhhhhhhcccCccccchhhhHHHH-HHHHHHHHHHHHHHHHHHhhccccccchh
Q 013324 109 ------------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAKTHADLE 169 (445)
Q Consensus 109 ------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 169 (445)
+.+.......+++.+..++.++|+...+.... ....|.++++.++..+... ..
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 160 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA--------LL 160 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hh
Confidence 11122223345555654320356666666655 3555666666554444332 13
Q ss_pred hHHHHHHHHHHHHH
Q 013324 170 NQYRWIAYSSIFIG 183 (445)
Q Consensus 170 ~g~~~~~~~~~~~~ 183 (445)
.+|++.+.......
T Consensus 161 ~~~~~~~~~~~~~~ 174 (338)
T COG0477 161 WGWRAAFLLAALLG 174 (338)
T ss_pred cchHHHHHHHHHHH
Confidence 57888665544444
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0049 Score=57.85 Aligned_cols=113 Identities=12% Similarity=-0.042 Sum_probs=68.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhh
Q 013324 253 MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMM 330 (445)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (445)
.++...|.+.....+...+.++..| +++||. |.++..+....++....... ..++..+...-++.|+.-|-..
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G---~~SD~yGRkpvll~c~~~va~s~ll~~~--S~~F~afv~aR~l~Gi~kgnl~ 139 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWG---CLSDRYGRKPVLLACLIGVALSYLLWAL--SRNFAAFVLARFLGGIFKGNLS 139 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhh---hhhhhhCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhccCchH
Confidence 3445677777777777777777766 556665 55666666655554443333 2355333444677787777543
Q ss_pred hhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 331 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
...+++.+..++++++ ...+..+....+|-.+||.+-+.+
T Consensus 140 -v~rAiisdV~sek~r~--l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 140 -VIRAIISDVVSEKYRP--LGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred -HHHHHHHhhcChhhcc--ceeeeeehhhhcchhhcchhhhHH
Confidence 5667777777778888 445555555555555555544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.008 Score=61.07 Aligned_cols=119 Identities=11% Similarity=0.108 Sum_probs=87.7
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 013324 249 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (445)
+....+.........+..++.++|+++.|++ ++++| |+.+.++.++..++.....+.+ +.+...+.-++.|++.+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GR--k~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGR--KPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGS 186 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhccc--HHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhcc
Confidence 3444555555666777788888999888865 44333 7778888888877776666644 88888899999999999
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
........+..+..++++|+ .+..+ ......++.+++...+.+.
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~--~~~~~-~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRG--LALTL-GGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred chhHHhHhhheeecCcchhh--HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 55555 4555556666666655554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.02 Score=59.25 Aligned_cols=137 Identities=7% Similarity=-0.031 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccC------
Q 013324 237 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM------ 309 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~------ 309 (445)
+++...+..|+.+.+|++...+..+........-+...+.+.+ +++..| ++.+.++.++..++..++.+...
T Consensus 4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-~~tIl~~~ii~~lG~~llai~a~~~~~~~ 82 (654)
T TIGR00926 4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-FKTILYLSIVYVVGHALLSFGAIPSSGHP 82 (654)
T ss_pred eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 4455667777777788877655443333322222333333322 222222 55666777776666655554321
Q ss_pred chhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccc-cchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 310 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLS-GCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
......+....+..+|.|..-|...+...+..+++++ ..-.++.++.++.++|+.++..+...+.
T Consensus 83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344556677788888777776666655443322 1225677778888888888888777654
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.096 Score=50.18 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHH
Q 013324 311 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV 367 (445)
Q Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~ 367 (445)
+.++.+....++|+..|-.......+..+..+++++- .+..+..+....|-..|.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e--~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKE--AAGNLMVFFLVGGLALGS 396 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHH--HHHHHHHHHHHHHHHHhh
Confidence 5566678888999999988777777777766555544 344444455544444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.39 Score=45.25 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=54.0
Q ss_pred hhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhH
Q 013324 250 DLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANAL 328 (445)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 328 (445)
+.|++..+.+.+.......+++.+.+.|.+ +|++| |+..+...++..++++.-. .++.+.+++.-++.|++...
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Gr--k~~cl~~cily~~scl~k~---~~~~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGR--KKACLLFCILYSLSCLTKH---SSNYPVLLLGRVLGGIATSL 137 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHH
Confidence 568998888887777777777777776654 44443 6666666666666655332 24677778888999999988
Q ss_pred hhhh
Q 013324 329 MMVT 332 (445)
Q Consensus 329 ~~~~ 332 (445)
.+..
T Consensus 138 LfS~ 141 (354)
T PF05631_consen 138 LFSA 141 (354)
T ss_pred HHHH
Confidence 7753
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.95 Score=46.25 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 312 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
.+|.+.=.+++|++-........-.--...|++-+. +..+++.+...+|..++..+++....
T Consensus 458 i~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS--~~~al~l~t~a~G~~lss~Lv~~v~~ 519 (571)
T KOG1237|consen 458 ILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKS--VATALWLLTVAVGNYLSSVLVSLVQF 519 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566678899988877765555555557888888 88889999999999999988866553
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.62 E-value=3.4e-05 Score=76.78 Aligned_cols=109 Identities=12% Similarity=0.175 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhHhhhhHh
Q 013324 257 AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM-NMSAFMYVLAIFVGIANALMMVTGI 334 (445)
Q Consensus 257 ~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (445)
..++......++.++|+++.+.+ +|++| |+.+..+..+..++.++..+.+. .+.+.+.+.-++.|++.|...+...
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GR--k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGR--KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566677788888999888864 44444 66777777777777666655431 2566777778899999999999999
Q ss_pred hhcccccccccccchhHHhHHHHHHHHHHHHHHHH
Q 013324 335 SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 335 ~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
.+..|..|+++|| ...++.+....+|..++..+
T Consensus 125 ~~~~E~~~~~~R~--~~~~~~~~~~~~G~~~~~~~ 157 (451)
T PF00083_consen 125 IYISEIAPPKHRG--FLSSLFQLFWALGILLASLI 157 (451)
T ss_pred ccccccccccccc--cccccccccccccccccccc
Confidence 9999999999999 66666666666665555443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00035 Score=70.54 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=2.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccC----
Q 013324 234 LVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPM---- 309 (445)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---- 309 (445)
....++..-...-++.++++++.+.|++....-++.++..++..+.+...+| -|.+..|.++++++.+++...+-
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hr-prwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHR-PRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cceeeecHHHHHHHHHHHhccHhhcCC
Confidence 3344444444455777899999999999999988888888777655433333 34466777777777666543320
Q ss_pred --------------------------------------------chhHHHHHHHHHHHHHHhHhhhhHhhhccccccccc
Q 013324 310 --------------------------------------------NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL 345 (445)
Q Consensus 310 --------------------------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 345 (445)
...+++++..++.|+|....++...++..+.+++++
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 012345566778899999999999999999999999
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHH
Q 013324 346 SGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 346 ~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
.+ .+.|+......+|+++|=.+
T Consensus 175 sp--lYiGi~~~~~~lGPa~Gf~l 196 (539)
T PF03137_consen 175 SP--LYIGILYAMSILGPALGFLL 196 (539)
T ss_dssp ------------------------
T ss_pred Cc--cchhhhhHHhhccHHHHHHH
Confidence 88 88888888888887766433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.029 Score=40.41 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 013324 226 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 279 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~ 279 (445)
-..+++...+.+....|+|.|+++ .|+++.+.+.+..+..+..+++.++.+.+
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~l 58 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFL 58 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777888999999986 79999999999888888888888887754
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.29 Score=46.95 Aligned_cols=148 Identities=13% Similarity=0.046 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHHHHHHHHHHHHH---------
Q 013324 40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVF--------- 108 (445)
Q Consensus 40 ~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~ll~~~i~~~~~~~~~~--------- 108 (445)
..+--..+-+|-.|. |+|..+-..+.........++-...|++..| .++||. ...++.....+..+..
T Consensus 224 ~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~-a~~G~~~~~~~f~lii~a~~~~~~~ 302 (403)
T PF03209_consen 224 FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT-AALGCLLGALAFALIILAGPLGSPW 302 (403)
T ss_pred HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHHHHHHhcccch
Confidence 333344566777776 9999999999998888888888899998885 555553 5555555555544322
Q ss_pred -----------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 013324 109 -----------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY 177 (445)
Q Consensus 109 -----------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 177 (445)
+.+...+...+++-+++. +++.+...+.......++.-++.++++.+.+........++..+|..+|.
T Consensus 303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~-~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~ 381 (403)
T PF03209_consen 303 LFRPGVFLLGLGNGLFTVGALSLMMDLTS-AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFA 381 (403)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 233444555555666665 56677777777777777777777777776654322211124567777777
Q ss_pred HHHHHHHHHHHH
Q 013324 178 SSIFIGCCFVGI 189 (445)
Q Consensus 178 ~~~~~~~i~~~~ 189 (445)
+-++..++...+
T Consensus 382 lEa~ll~~a~~l 393 (403)
T PF03209_consen 382 LEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHH
Confidence 665554444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0091 Score=55.91 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=68.0
Q ss_pred HHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH------HHH--------hhhhhH---hhhhhhcccCccc
Q 013324 68 GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------GWA--------ATQVAH---MSMVNCITLNSTS 130 (445)
Q Consensus 68 ~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------~~~--------~~~~~~---~al~~~~~~~~~~ 130 (445)
..+...-+.++.|++.||+||||.+ ....+.+.+..++.+ .+. .+...+ ....+|..+ ...
T Consensus 390 tslaefPGlLIt~~iverlGRKkTM-al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyP-Tav 467 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTM-ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYP-TAV 467 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccc-hhh
Confidence 3445556677899999999999984 444445554444433 111 111222 233466665 566
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 013324 131 RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 198 (445)
Q Consensus 131 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 198 (445)
|+...+......-+|+++.++++ ...+ ..-..+..+.+..+++..+...++.-|++
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA-~~~e-----------~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA-MRAE-----------LSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH-HHhc-----------cceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 88878877777888888888776 2211 11122334555556666666656555643
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.078 Score=52.42 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=69.6
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHhhccC--chhHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWT----GQRLKAYYSAGGVLWVFCGAGILILPM--NMSAFM 315 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 315 (445)
-..+|+++++|+++.+...+.....+...+- ++.|.+.+. +.|+|..++++.++..++...+...+. .+....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 3456788889999987776666555544433 333433222 233366677777777665555555542 233444
Q ss_pred HHHHHHHHHHHhHhhhhHhhhcccccc--cccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 316 YVLAIFVGIANALMMVTGISMQNVLVG--EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.+..++..+|.......+-++..+... ++.+| -..+.....+.+|+.++..+.+..
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g--~lqS~~~~~~~~G~lv~~~l~G~l 147 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRG--DLQSFVWGVRSVGSLVGSLLSGPL 147 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455556666666655544444444422 22244 344444555556665555544443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.27 Score=47.55 Aligned_cols=115 Identities=11% Similarity=0.049 Sum_probs=65.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhcc-C---chhH--HHHHHHHHHHHH
Q 013324 254 GQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP-M---NMSA--FMYVLAIFVGIA 325 (445)
Q Consensus 254 ~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~-~---~~~~--~~~~~~~l~g~~ 325 (445)
+.....+...++++..+..++..- |+.|++ |....++..+.+++..+-.... + +.++ +......+.+..
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~m---w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~A 153 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAM---WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAA 153 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHH---HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHh
Confidence 333344555555555555544444 556666 7777888888777766554332 2 3444 444555555555
Q ss_pred HhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 326 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.........-..+.-++++++. .+..+..++..+|.+++-.+-..+
T Consensus 154 q~Fim~lPskiA~~WF~~~qra--~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 154 QPFILGLPSKIAAVWFPPDQRA--IATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred hhHhhccccHHHHhhCCcchhh--hhhhHHHhcchHHHHHHhhcccee
Confidence 5444333333333347888888 666666777777777665544333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.2 Score=43.71 Aligned_cols=183 Identities=10% Similarity=0.024 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHHHH-HHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-------------------------
Q 013324 55 GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF------------------------- 108 (445)
Q Consensus 55 g~s~~~~g~l~~~~~i-~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~------------------------- 108 (445)
..++..+.++-+..-+ ...+..++.+++.++.-|.|++-.........-.+..+
T Consensus 57 ~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~ 136 (509)
T COG3202 57 RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPM 136 (509)
T ss_pred cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCc
Confidence 4567788888887777 66677899999999999888754433322222212111
Q ss_pred ----------------------HHHhhhh--hHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 109 ----------------------GWAATQV--AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 109 ----------------------~~~~~~~--~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
.|+.... -......+++. .+|-.|..+....+.+++.++++.+...+........
T Consensus 137 ~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt-~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~ 215 (509)
T COG3202 137 FLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT-IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALA 215 (509)
T ss_pred cceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHh
Confidence 1111111 12334456654 5667788888888888887777766665543211000
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhccc----cccc-------ccccccCCcchHHHHHHHHhchHHHHHHHHHHHHH
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIFLSRT----EEPR-------LKMGLRGNSHARISWAYWFKKILYYQVALVYMLTR 233 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~----~e~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (445)
........+..+.+.+..+++...+..+.- +++. ++++++.+.+..+.++.+.|.|..+.+.+...++.
T Consensus 216 ~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~ 295 (509)
T COG3202 216 SEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYG 295 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 000011234444444444444443332211 1111 11112233456778888889998887777777766
Q ss_pred HHHHH
Q 013324 234 LVVNV 238 (445)
Q Consensus 234 ~~~~~ 238 (445)
.+.+.
T Consensus 296 v~inL 300 (509)
T COG3202 296 VSINL 300 (509)
T ss_pred HHHHH
Confidence 65554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.036 Score=40.51 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH
Q 013324 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (445)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~ 106 (445)
+.+|...+|.++|.++.|++-+...+.+.++.+...++.+|..+++. +..+.+....+...
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL-LRAGLLLTVLSTAA 73 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHH
Confidence 46677777779999999999999999999999999999998655554 45555555554443
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.5 Score=43.41 Aligned_cols=57 Identities=9% Similarity=0.169 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHH
Q 013324 311 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
+.+..++..+++|+..|...+.+..+..+..+++++. .+..+++++..+|-.+|+.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e--~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHERE--VAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4566677788999999988887777777776666666 66777788888887777654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.045 Score=53.94 Aligned_cols=148 Identities=16% Similarity=0.045 Sum_probs=90.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHH-HH-
Q 013324 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS-VF- 108 (445)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~-~~- 108 (445)
+..+......+.+.+++-+.++|.|..++..|....+-...-...-++.+++..|+|+-+++.+ ++...++=+.. .+
T Consensus 378 ~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~l-gLa~~~~Rf~~~S~L 456 (618)
T KOG3762|consen 378 FVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYL-GLACNVGRFLYYSYL 456 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeee-hhhHHHHHHHHHHHh
Confidence 3445555677778888888889998888888877666667777778899999999999887443 22222222221 11
Q ss_pred ---------------HHHhhhhhHhhhhhhcccCccccchhhhHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhHH
Q 013324 109 ---------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 172 (445)
Q Consensus 109 ---------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~ 172 (445)
.++++.....+.+....+ |+-|..+.++.. ...++|--+|+++++.++.. .+-
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaP-p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~----------fg~ 525 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAIISYASHVAP-PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER----------FGA 525 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCC-CcchHHHHHHHHHHhcccCcchhhhhhhhhhee----------ehh
Confidence 333344444455555555 666666665543 34445556777777777643 344
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013324 173 RWIAYSSIFIGCCFVGIF 190 (445)
Q Consensus 173 ~~~~~~~~~~~~i~~~~~ 190 (445)
|..|...++.+++.++++
T Consensus 526 ~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 526 RTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555444433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.1 Score=37.18 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccccccccc
Q 013324 267 ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL 345 (445)
Q Consensus 267 ~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 345 (445)
....+..++.|.+ ++++. |+.++++.+...+-...... .+.+..+...++.|++.+..+...-.+..+...++.
T Consensus 48 ~~~~~s~l~~P~iv~~lg~--K~sm~lg~~~y~~y~~~~~~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~ 122 (156)
T PF05978_consen 48 GSFAISCLFAPSIVNKLGP--KWSMILGSLGYAIYIASFFY---PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET 122 (156)
T ss_pred HHHHHHHHhHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence 3344555555543 44444 77788887776654443332 245667788889999999988766666665555566
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHH
Q 013324 346 SGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 346 ~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
++ ...++.-...+.+..+|+.+
T Consensus 123 ~~--~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 123 IG--RNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred Hh--hHHHHHHHHHHHHHHHHHHH
Confidence 66 44444444444444444443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.3 Score=43.10 Aligned_cols=130 Identities=10% Similarity=0.011 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHH---HHHHHHHHhhccC--
Q 013324 236 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVL---WVFCGAGILILPM-- 309 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~-~~~~~~~~~~---~~~~~~~~~~~~~-- 309 (445)
....-....-.+....|.+....+.+.+++..+..+|+.+.+++. ++. ++....-..+ ..++..++.....
T Consensus 30 ~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~---~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~ 106 (521)
T PRK03612 30 GLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLL---RDAAAGFVAVELLLALLGGLSALILYAAFAFQ 106 (521)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445677766666666667777777887766442 221 2221111111 1111111111110
Q ss_pred -chhHHHHHHHHHHHHHHhHhhhhHhhhcccccc---cccccchhHHhHHHHHHHHHHHHHHHHH
Q 013324 310 -NMSAFMYVLAIFVGIANALMMVTGISMQNVLVG---EDLSGCAFVCGTLSFLDKMSCGIAVYVL 370 (445)
Q Consensus 310 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~ig~~i~~~l~ 370 (445)
......+...++.++..|+..|....+...... .+.. |..++.+.++..+|..+.+.++
T Consensus 107 ~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~--g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 107 GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNV--ATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhh--hhhHhHHhHHHHHHHHHHHHHH
Confidence 011122333445677788887766555443211 1223 3677777766666666655443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.09 Score=54.25 Aligned_cols=200 Identities=12% Similarity=0.091 Sum_probs=116.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 013324 218 KKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLW 297 (445)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~ 297 (445)
+.+.|..+.....+......++..-.-.-+++.++++....|++....-++..+......+.+-+..| -+.+-+|.+++
T Consensus 94 ~~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~Hr-Pr~Ig~G~~~m 172 (735)
T KOG3626|consen 94 NIKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHR-PRWIGIGLVLM 172 (735)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCc-cceeeechhHH
Confidence 34455544433333333333444444455677788888887877676767766665555543222222 34566777777
Q ss_pred HHHHHHHhhccC-----------------------------------------------c--hhH-HHHHHHHHHHHHHh
Q 013324 298 VFCGAGILILPM-----------------------------------------------N--MSA-FMYVLAIFVGIANA 327 (445)
Q Consensus 298 ~~~~~~~~~~~~-----------------------------------------------~--~~~-~~~~~~~l~g~~~~ 327 (445)
+++.++..+.+. . .+| +++...++.|+|..
T Consensus 173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 777666654310 0 033 45566778999999
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc---ccCCccccCCCcccccccccCCCCCCHhHH
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ---SMSPTVLDNNSSITSLTVLDNNSLISTSYI 404 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (445)
..++....|..+-+.+++.. ++.|+......+|+++|=.+-+... .+.+... . +-...++-.+
T Consensus 253 pi~tlGisYiDDnvk~~~Sp--lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~-~-----------~it~~DPrWI 318 (735)
T KOG3626|consen 253 PIFTLGISYIDDNVKKKNSP--LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSP-I-----------GITPTDPRWI 318 (735)
T ss_pred CCccCCCccccccccccCCc--HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCC-C-----------CCCCCCcchh
Confidence 99999999998888888888 8999988888888887744433221 1111000 0 0001234444
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHhccCCC
Q 013324 405 SVTRFGLGLIPAICSLVSVAVTFTMKLHT 433 (445)
Q Consensus 405 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 433 (445)
-+.-..+.+.+ .+.+++.+.++++|++.
T Consensus 319 GAWWlGFLi~g-~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 319 GAWWLGFLICG-ALLLFSAVPLFFFPKEL 346 (735)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHhCcccC
Confidence 45555555545 44555666666666543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=2.7 Score=42.57 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013324 47 LLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85 (445)
Q Consensus 47 l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr 85 (445)
..-.+.-+ |.+..+.+.+++++....+++..+.|++.++
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444555 9999999999999999999999998888744
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=94.44 E-value=4.7 Score=39.20 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhh-hcccchhhh--HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHH
Q 013324 239 SQAYLAFYVIND-LRMGQSAKA--LVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFM 315 (445)
Q Consensus 239 ~~~~~~~~~~~~-~g~~~~~~~--~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (445)
...|+.+|+.+. .|++..+.. .++... =..+..-+....+.++. |.|+.++++.+...+...++.+. .+.+.+
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~t-YSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~--~sv~~m 97 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWT-YSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG--TSVLAM 97 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH--CcHHHH
Confidence 457888888875 788776533 222211 11111111111122222 23888888877777776666664 466777
Q ss_pred HHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHH
Q 013324 316 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVY 368 (445)
Q Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~ 368 (445)
-+..+..|++.+.-.+. .++.-..+++++-- .+.+....+..+|..+++.
T Consensus 98 q~~q~~yg~~~a~evay-~sYiys~v~~~~yq--~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 98 QLMQFFYGLATAAEVAY-YSYIYSVVDKEHYQ--KVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHHHHHHHHHH-HHHheeecCHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 77888888888774432 23332333333333 3344444444444444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.71 Score=33.77 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 013324 240 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILP 308 (445)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (445)
...+| .++++.+++..+.+++.+.+.++-++|++...++.+..+ .++.+..+.+...+....+.+.+
T Consensus 12 TplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 12 TPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSR-PRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444 455567999999999999999999999988875433222 25566777777777766666544
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.24 Score=47.94 Aligned_cols=86 Identities=8% Similarity=0.018 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhhc--cC-----chhHHHHHHHHHHHHHHhHhhhhHhhhccccccccc-ccchhHHhHHHHHHH
Q 013324 289 YYSAGGVLWVFCGAGILIL--PM-----NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL-SGCAFVCGTLSFLDK 360 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 360 (445)
++.++.++..++.+++... +. ...+.+++...+.++|.|..=|+...+..+..++++ .-...++..+.++.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 4566666666666553322 21 123566777788899999988887777666655442 222366788889999
Q ss_pred HHHHHHHHHHHHcc
Q 013324 361 MSCGIAVYVLQSYQ 374 (445)
Q Consensus 361 ig~~i~~~l~~~~~ 374 (445)
+|..++..+..++.
T Consensus 83 ~G~~~~~~~~~~i~ 96 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQ 96 (372)
T ss_dssp HHHHHHHHCCCHHH
T ss_pred hhhHhhcccchhhc
Confidence 99988887766665
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.9 Score=41.61 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH--HHhHhhhhHhhhccccc
Q 013324 266 YICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI--ANALMMVTGISMQNVLV 341 (445)
Q Consensus 266 ~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~~ 341 (445)
++..++.+++.| .++||+ |..+......+.+......+. . |+.++ +.++ +.+..++...+++++.+
T Consensus 72 ~~~~~i~s~~iG---~lSD~~grk~~L~~~~~~~~l~~~~~~~~---~-~~~~~---~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 72 GLLTLISSPLIG---ALSDRYGRKVVLLLPLFGTILPALCLLFQ---G-YWFFL---LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred HHHHHHHHhhhH---HhhhhhhhhhhHHHHHHHHHHhHHHHHHH---H-HHHhh---hcccccchhhhhhhhhhheeecc
Confidence 344444444444 566666 444455555555444444432 2 33333 3332 33445667778888877
Q ss_pred ccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 342 GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 342 ~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.++.|. ...++.+-....+..+++.+.+..
T Consensus 142 ~~~~R~--~~~gll~~~~~~~~~~~p~~~~~~ 171 (463)
T KOG2816|consen 142 SEEERS--SSIGLLSGTFGAGLVIGPALGGYL 171 (463)
T ss_pred chhHHH--HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 777766 555555554444444444444433
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.24 Score=45.41 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHH
Q 013324 310 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l 369 (445)
++.|.+++..+.-|+-.|....++.--+.+.+++++|- .+.+..+....+|..+++.+
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rE--famsavs~sDS~Gi~lA~~l 397 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVRE--FAMSAVSISDSIGIFLAGLL 397 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHH--HhHhhheecchhhHHHHHHH
Confidence 47777777777778877777777777777777777777 67777777888887777665
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.42 E-value=4.6 Score=33.51 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=45.4
Q ss_pred HHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH----------------HHHhhhhhHhhhhhhcccCccccc
Q 013324 69 QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----------------GWAATQVAHMSMVNCITLNSTSRV 132 (445)
Q Consensus 69 ~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----------------~~~~~~~~~~al~~~~~~~~~~r~ 132 (445)
....++..++...+.++.|.|+.+++ +.+...+-....+ +.+....+....+.+.. ++++|+
T Consensus 47 Y~~~~~s~l~~P~iv~~lg~K~sm~l-g~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s-~~~~~~ 124 (156)
T PF05978_consen 47 YGSFAISCLFAPSIVNKLGPKWSMIL-GSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS-TEETIG 124 (156)
T ss_pred HHHHHHHHHhHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC-CHHHHh
Confidence 34445556667788999999887544 4444443322211 22223333333344433 366677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 013324 133 VLTSCRNAFTMVANLSLYAIAF 154 (445)
Q Consensus 133 ~~~~~~~~~~~~g~~~~~~~~~ 154 (445)
+..++.......+.+.|.+...
T Consensus 125 ~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 125 RNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666666554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.12 E-value=5.4 Score=38.55 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHhHhhhhHhhhccccccccccc
Q 013324 312 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG 347 (445)
Q Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g 347 (445)
.+..++..++.+.+.+..+......... .|+|...
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq 151 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ 151 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH
Confidence 3444555667788888877766666554 3444433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=9.1 Score=34.59 Aligned_cols=109 Identities=14% Similarity=0.232 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHh
Q 013324 257 AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGI 334 (445)
Q Consensus 257 ~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (445)
..+.......+...++.+..+. +.||. |+.+..+......+.....+......+.........|++.+...+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~---l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGP---LGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh---ccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445555555666666655554 34432 344444444323332333333222345555555567888887777777
Q ss_pred hhccccccc-ccccchhHHhHHHH-HHHHHHHHHHHHH
Q 013324 335 SMQNVLVGE-DLSGCAFVCGTLSF-LDKMSCGIAVYVL 370 (445)
Q Consensus 335 ~~~~~~~~~-~~~g~~~~~~~~~~-~~~ig~~i~~~l~ 370 (445)
.+..+..++ ++++ ...+.... ...+|..+++.+.
T Consensus 117 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T COG0477 117 ALLSEWFPEATERG--LAVGLVTLGAGALGLALGPLLA 152 (338)
T ss_pred HHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665 4455 55555544 3445555555333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=91.57 E-value=16 Score=36.49 Aligned_cols=41 Identities=5% Similarity=-0.045 Sum_probs=33.8
Q ss_pred hHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 332 TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.-+....+.+..++.. ..+++.+.+.++|..+++.+...+.
T Consensus 149 lFW~fandi~t~~qak--Rfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAK--RFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777 8899999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=89.49 E-value=11 Score=37.19 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=70.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH----H------------
Q 013324 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV----F------------ 108 (445)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~----~------------ 108 (445)
+.+..|++..|+++..+|..-+...+....+.....++.+|+|..|.=+. +...-.....++ +
T Consensus 279 ~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~-~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 279 GLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLW-SLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 35667777789999999999999999999999999999999998886322 222111111111 1
Q ss_pred -----------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHH
Q 013324 109 -----------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 152 (445)
Q Consensus 109 -----------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 152 (445)
+.-.......-++.|.. +++||+..++......++.-++...+
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V-~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENV-PESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccC-CHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222233433 47889999999988888777765544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.01 E-value=15 Score=35.33 Aligned_cols=144 Identities=10% Similarity=0.134 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHH--HHHHHHHHHH--HHHhhhhh----hHHHHH
Q 013324 221 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYIC--SFIVSILLQE--MAWTGQRL----KAYYSA 292 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~ig~~l~~~--~~~~~~r~----~~~~~~ 292 (445)
++..+.+.+.......+-.. -.|..++ ..|.|-...+.+.....-. =++-+++..- .++++||+ +-....
T Consensus 32 ~illLl~LYllQGiP~GL~~-~iP~lL~-ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll 109 (510)
T KOG3574|consen 32 SILLLLFLYLLQGIPLGLIG-AIPLLLQ-AKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL 109 (510)
T ss_pred hHHHHHHHHHHcCCchhHhh-hhHHHhc-CCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence 45556666766665555433 6666666 3355544333333222111 2333444432 23555543 112334
Q ss_pred HHHHHHHHHHHHhhcc-Cc-hhH--HHHHHHHHHHHHHhHhhh--hHhhhcccccccccccchhHHhHHHHHHHHHHHHH
Q 013324 293 GGVLWVFCGAGILILP-MN-MSA--FMYVLAIFVGIANALMMV--TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIA 366 (445)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~-~~~--~~~~~~~l~g~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~ 366 (445)
|..+..++...--... .. .+. .......+.-+..+..-. +.++. ..-++++-| -++..++.++.+|.+++
T Consensus 110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL--tmLs~e~lg--yaST~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL--TMLSRENLG--YASTCQSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH--HhcCHhhcC--chhHHHHHHHhhhHHhh
Confidence 4443333322222221 11 111 111122334444444322 33333 234566667 67777888888888887
Q ss_pred HHHH
Q 013324 367 VYVL 370 (445)
Q Consensus 367 ~~l~ 370 (445)
..++
T Consensus 186 ~~if 189 (510)
T KOG3574|consen 186 NVVF 189 (510)
T ss_pred ccee
Confidence 6544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.74 E-value=0.46 Score=46.14 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhh---hHHHHHHHHHHHH
Q 013324 224 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVF 299 (445)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~---~~~~~~~~~~~~~ 299 (445)
......+-..+++..=..|.++|+++ .|.+....++.....-+..++..++.|.. +|..-|+ |+.+..+..+..+
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~ 114 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAV 114 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHH
Confidence 33444445556666777899999986 58888877766555555566666666653 3322233 4555555555555
Q ss_pred HHHHHhhcc--------Cchh--HHHHHHHHHHH-----HHHhHhhhhHhhhcccccccccccchh-HHhHHHHHHHHHH
Q 013324 300 CGAGILILP--------MNMS--AFMYVLAIFVG-----IANALMMVTGISMQNVLVGEDLSGCAF-VCGTLSFLDKMSC 363 (445)
Q Consensus 300 ~~~~~~~~~--------~~~~--~~~~~~~~l~g-----~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ig~ 363 (445)
+..++.+.+ .... -..-+...+.| +..-..+.++-++..+...++++- . +++..++...+|+
T Consensus 115 ~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~--~~Ans~f~~f~avGn 192 (498)
T KOG0637|consen 115 SLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKK--TRANSVFSFFMAVGN 192 (498)
T ss_pred HHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhh--hccchhHHHHHHhcc
Confidence 555444321 0111 01112222333 333344555666666654433333 2 5666667777776
Q ss_pred HHHH
Q 013324 364 GIAV 367 (445)
Q Consensus 364 ~i~~ 367 (445)
.+|-
T Consensus 193 vLGY 196 (498)
T KOG0637|consen 193 VLGY 196 (498)
T ss_pred eeee
Confidence 5553
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=84.63 E-value=8.4 Score=37.12 Aligned_cols=75 Identities=8% Similarity=-0.183 Sum_probs=50.1
Q ss_pred HHHhhhhhHhhhhhhcccCc--cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHH
Q 013324 109 GWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCF 186 (445)
Q Consensus 109 ~~~~~~~~~~al~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 186 (445)
+.+..-....++..|..+++ ++|.+...+.+.+.++|..++....+.+- ++.+|.+.|.+.++..++.
T Consensus 46 G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~----------~~~~~~~~f~i~~~~~~~~ 115 (372)
T PF00854_consen 46 GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQ----------QNYGWFLGFGIPAIGMLLA 115 (372)
T ss_dssp HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHH----------HCS-HHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhc----------cccchhhhhhHHHHHHHHH
Confidence 55566666677778877643 44566677777888888888765555442 3578999998877766666
Q ss_pred HHHHhcc
Q 013324 187 VGIFLSR 193 (445)
Q Consensus 187 ~~~~~~~ 193 (445)
.+.++..
T Consensus 116 ~~~f~~~ 122 (372)
T PF00854_consen 116 LIVFLSG 122 (372)
T ss_dssp HHHHHCC
T ss_pred HHHHHhC
Confidence 6555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=84.28 E-value=49 Score=33.31 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=36.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCC
Q 013324 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH 88 (445)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Gr 88 (445)
.|.+++.-....+..+.+.+++-.-+.+.-.+..|+.-......+...++..+.|.+.-.+.+
T Consensus 143 ~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 143 NWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444445667787777777777777777777766655443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.10 E-value=32 Score=34.18 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhccccc
Q 013324 263 AIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV 341 (445)
Q Consensus 263 ~~~~~~~~ig~~l~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 341 (445)
.+......+..++.+. ++.+.. |..+.++........+.+++ . +.+..+....+.|+|.+..+.-.-.+..+..
T Consensus 57 aiiY~~ftv~~l~~psiv~~i~~--K~~lv~ga~~y~~f~~gfl~--~-N~y~~yfssallG~Gaallw~GqG~ylt~~s 131 (461)
T KOG3098|consen 57 AIIYAFFTVSCLFAPSIVNFLGP--KWALVIGATCYAAFPLGFLF--P-NSYYLYFSSALLGFGAALLWTGQGGYLTSNS 131 (461)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhH--HHHHHHHhHHHHHHHHHHHh--c-chHHHHHHHHHhhhhHHheecccceehhhcC
Confidence 3334444555566664 345555 77777777766655555444 2 4567788889999999987765445555555
Q ss_pred ccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 342 GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 342 ~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
.++... ...++.-...+.+..+|+.+.-.+.+
T Consensus 132 t~~tie--~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 132 TRETIE--RNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred ChhhHH--HHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 555555 45555555556666666666555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 445 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 45/254 (17%), Positives = 78/254 (30%), Gaps = 76/254 (29%)
Query: 237 NVSQAYLAFYVINDLRMGQSAKALVPAII---YICSFIVSILLQEMAWTGQRLKAYYSAG 293
VS F+ + + + + V ++ Y F++S + E + Y
Sbjct: 60 AVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 294 GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV-GEDLSGC---- 348
L+ + N+S L + AL+ + +NVL+ G + G
Sbjct: 117 DRLY---NDNQVFAKYNVSRLQPYLKL----RQALLELR--PAKNVLIDG--VLGSGKTW 165
Query: 349 --AFVCGTLSFLDKMSCGI----------AVYVLQSYQSMSPTV-------LDNNSSI-- 387
VC + KM I VL+ Q + + D++S+I
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 388 -------------------TSLTVLDN--NS------------LISTSYISVTRFGLGLI 414
L VL N N+ L++T + VT F
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 415 PAICSLVSVAVTFT 428
SL ++T T
Sbjct: 286 TTHISLDHHSMTLT 299
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.89 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.88 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.1 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.09 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.05 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.99 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.89 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.75 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=256.04 Aligned_cols=338 Identities=11% Similarity=-0.007 Sum_probs=248.3
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
++......++.+..........+++|.+.+|+ .++++.|++.+++.+...+++|++|+++||+||||.++ .+.+...+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~-~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP-AGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHH-HHHHHHHH
Confidence 44456677777777777778888899999999 99999999999999999999999999999999998754 34443333
Q ss_pred HHHHH------H---------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013324 103 SFSSV------F---------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 161 (445)
Q Consensus 103 ~~~~~------~---------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 161 (445)
+..+. . +.+....+..+++.|..+ +++|+++.++...+..+|.++++.+++.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--- 180 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLGMA--- 180 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH---
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 32221 1 233344556677788775 6889999999999999999999888877653
Q ss_pred cccccchhhH-HHHHHHHHHHHHHHHHHHHhccccccccccc----cc--C------------Ccch-HHHHHHHHhchH
Q 013324 162 AKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LR--G------------NSHA-RISWAYWFKKIL 221 (445)
Q Consensus 162 ~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~----~~--~------------~~~~-~~~~~~~~~~~~ 221 (445)
..+ ||+.+.+.+++.++..++..+..||++.+.+ ++ + +.+. +...++++|+|.
T Consensus 181 -------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (451)
T 1pw4_A 181 -------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL 253 (451)
T ss_dssp -------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHH
T ss_pred -------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHH
Confidence 346 9998888877777666555555566432210 00 0 0001 111466788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhh-hhhhHHHHHHHHHHH-
Q 013324 222 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG-QRLKAYYSAGGVLWV- 298 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~-~r~~~~~~~~~~~~~- 298 (445)
++...+..++..........++|.|+++..|.+....+.......++.+++.++.+++ +|+. +| |+.+..+..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~-~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHH
Confidence 9988888888888888889999999998889999888888888888999999988875 4431 22 455555555444
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHH-HHHHHHHHHHHcccc
Q 013324 299 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQSM 376 (445)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-g~~i~~~l~~~~~~~ 376 (445)
++.+.+.+.+..+.+.......+.|++.+...+....+..+..|++++| .+.|+.+....+ |..+++.+.+.+.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4544444433335666666777888888888887788888889999899 889999999999 999999888876643
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=240.51 Aligned_cols=345 Identities=11% Similarity=-0.029 Sum_probs=241.9
Q ss_pred CCchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
+.+++......+..+...+......+++|.+.+++|.++.++|++.+++.+...+++|+.|+++||+||||.+++ +.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~-~~~~ 100 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT-GLFL 100 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH-HHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH-HHHH
Confidence 344555566677777778888888888999888889999999999999999999999999999999999998544 4444
Q ss_pred HHHHHHHH----H----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHH-H
Q 013324 100 VAVSFSSV----F----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF-S 158 (445)
Q Consensus 100 ~~~~~~~~----~----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~ 158 (445)
..++..+. + +.+....+..+++.+..+ +++|+++.++...+..+|.++++.+++.+. .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444333 1 333445556677778775 788999999999999999999998888776 3
Q ss_pred hhcccc---------------ccchhhHHHHHHHHHHHHHHHHHHHHhc-ccccccccc-cccCCcchHHHHHHHHhchH
Q 013324 159 VSTAKT---------------HADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKM-GLRGNSHARISWAYWFKKIL 221 (445)
Q Consensus 159 ~~~~~~---------------~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~ 221 (445)
..+..+ ......+||+.+.+.+++.++..++..+ ..||++.++ +++++++.++++++++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRH 259 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSH
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChH
Confidence 211000 0001122999887766665555444332 334433222 22334456677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHH
Q 013324 222 YYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 299 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~ 299 (445)
++...+..++..........+.|.| +++..|.+....+.......++.+++.++.+++ +|+.+ |+.+..+.++..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~--~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP--HKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHH
Confidence 9988888777777788888999999 888889999888888888888888888888864 33333 5666666666666
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHccc
Q 013324 300 CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 375 (445)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~~ 375 (445)
+.+...+.+ +.+. ....++.|++.+...+....+..+..|++ ++ ...++.. ...+|..+++.+.+.+.+
T Consensus 338 ~~~~~~~~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 338 LCLISAFAG--GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHHCC--HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH--HHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc--chhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 655555533 3333 33446778888888888888866666655 55 4455544 445777777777766553
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=230.36 Aligned_cols=327 Identities=11% Similarity=0.011 Sum_probs=236.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH
Q 013324 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (445)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~ 107 (445)
...+..+..........+.+|.+.+|+|.++++.|++.+++.+...+.+|+.|+++||+||||.++. +.+...++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILV-GMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH-HHHHHHHHHHHH
Confidence 3456667777888888888999888889999999999999999999999999999999999998554 333333333222
Q ss_pred H-----------------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 013324 108 F-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 170 (445)
Q Consensus 108 ~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (445)
. +.+.......+++.|..+ +++|++..+....+..+|..+++.+++.+. +..
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----------~~~ 151 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGLLD----------TMW 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHHSS----------CHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----------Hhc
Confidence 1 223344455667777775 678999999999988888888887776653 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013324 171 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 250 (445)
Q Consensus 171 g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (445)
+||+.+.+.+++.++..+...+..||++.+++ ++++.++++++++|||+++...+..++..........+.|.|+++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (375)
T 2gfp_A 152 NWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV 229 (375)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--ccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988877777766655566677543322 1223344557788999988888888777778888889999999988
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHhh--ccCchhHHHHHHHHHHHHHHh
Q 013324 251 LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVL-WVFCGAGILI--LPMNMSAFMYVLAIFVGIANA 327 (445)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~ 327 (445)
.|.++.+.+.......++.+++.++.+ ++.||.++....+... ...+...... ...++.+...+..++.|++.+
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~---~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 306 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAG---RPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAG 306 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHH---TTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHH
Confidence 899988888888888888888887766 5566653333333333 2222221111 112355556667778899999
Q ss_pred HhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 328 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
...+....+..+..| +++| .+.++.+....+|..+++.+.+.+.
T Consensus 307 ~~~~~~~~~~~~~~p-~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 307 MLFPLATSGAMEPFP-FLAG--TAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HTSSTTHHHHHTHHH-HHHH--HHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HhhHHHHHHHHHhCC-cccc--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888877777 6778 8899999998888888777665553
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-24 Score=216.77 Aligned_cols=337 Identities=9% Similarity=-0.011 Sum_probs=223.5
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHH
Q 013324 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAG 96 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~ll~~ 96 (445)
+..+......+........+.++++.|+++ +|.++.+.|++.+++.+...+++|+.|+++|| +||||+++ .+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~-~~ 91 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF-WG 91 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH-HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH-HH
Confidence 455566667777777788888888888876 69999999999999999999999999999999 89998854 44
Q ss_pred HHHHHHHHHHHH-----------------HHHhhhhhHhhhhhhcccCccc--cchhhhHHHHHHHHHHHHHHHHHHHHH
Q 013324 97 SVLVAVSFSSVF-----------------GWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVANLSLYAIAFIVF 157 (445)
Q Consensus 97 ~i~~~~~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~ 157 (445)
.+...++..... +.+....+..+++.|..+ +++ |+...+..+.+..+|..+++.+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD-EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC-cccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 444544444332 233344555677778776 445 666777777888888888888887765
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccc----cccccCCc-chHHHHH------------------
Q 013324 158 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL----KMGLRGNS-HARISWA------------------ 214 (445)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~----~~~~~~~~-~~~~~~~------------------ 214 (445)
. ..+||+.+.+.++..++..+...+..++... +++++.++ +.++..+
T Consensus 171 ~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 240 (491)
T 4aps_A 171 E----------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL 240 (491)
T ss_dssp H----------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred h----------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 4689999887766555554443322222111 11110011 1111000
Q ss_pred -------------------------------------HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 013324 215 -------------------------------------YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA 257 (445)
Q Consensus 215 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 257 (445)
+..+....+...+...+..........++|.|.++..+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4aps_A 241 VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP 320 (491)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC
T ss_pred ccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccC
Confidence 0001111233344445555666667788899998877777555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHhhhhh---hHHHHHHHHHHHHHHHHHhhcc-------CchhHHHHHHHHHHHHHH
Q 013324 258 KALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVFCGAGILILP-------MNMSAFMYVLAIFVGIAN 326 (445)
Q Consensus 258 ~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~ 326 (445)
.+.......+..+++.++.+++ +|+.+|. .+.+..+..+..+++..+.... ..+.+......++.|++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 400 (491)
T 4aps_A 321 VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE 400 (491)
T ss_dssp SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH
Confidence 5666666667777777777764 5555442 2233466666666555444321 224556667778889999
Q ss_pred hHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 327 ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
+...+....+..+..|++.+| .+.|+.+....+|..+++.+.+...
T Consensus 401 ~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 401 MLISPVGLSVTTKLAPKAFNS--QMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HTTTTHHHHHHHHHTTTTCSS--SSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888999999999 8888999999999999998876664
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=219.69 Aligned_cols=336 Identities=11% Similarity=0.069 Sum_probs=201.0
Q ss_pred CchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
++.++.+......+..........+++|.|+++. |.|+.++|++.+++.+...+++|++|+++||+||||++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~ 83 (417)
T 2cfq_A 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4556666666666667777777788999999885 999999999999999999999999999999999999865433322
Q ss_pred HHH--HHHH-HH----------HHH-------hhhhhHhhhhhhcccC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013324 100 VAV--SFSS-VF----------GWA-------ATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 100 ~~~--~~~~-~~----------~~~-------~~~~~~~al~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 158 (445)
... .... .+ +.. ....+......+..++ +++|+...+....+..+|..+++.+++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 163 (417)
T 2cfq_A 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp TSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1110 00 000 0000111112222211 1334444444444455666677666666542
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccc--cc----cCCcchHHHHHHHHhchHHHHHHHHHHHH
Q 013324 159 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GL----RGNSHARISWAYWFKKILYYQVALVYMLT 232 (445)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (445)
.+|++.+++.++..++..+..++..||++.+. ++ ++++...+++++++|+|+++...+..+..
T Consensus 164 -----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T 2cfq_A 164 -----------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp -----------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHH
Confidence 36788877655554444333333334432110 00 11112234557788999987766554444
Q ss_pred HHHHHHHHHHHHHHHHhhhcc---cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhc
Q 013324 233 RLVVNVSQAYLAFYVINDLRM---GQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILIL 307 (445)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~ 307 (445)
.........++|.|+.+..+. +....+.......++.+++.++.++ +.||+ |+.+..+..+.++..+...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~---l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL---IINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445556678887665432 2333455555555666777777664 34444 556666666666554444432
Q ss_pred cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhH-HHHHHHHHHHHHHHHHHHcc
Q 013324 308 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 308 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.+..++...+.+++.+...+....+..+..|++.+| ..++. ++....+|..+++.+.+.+.
T Consensus 310 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 310 --TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp --CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 24455555556677777666666677888888888888 76776 47777788888877776554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-21 Score=189.05 Aligned_cols=334 Identities=13% Similarity=0.057 Sum_probs=187.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh----C----CCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHH
Q 013324 30 GSGHMLNDITAACWFTYLLLFLTDI----G----LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (445)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~----g----~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~ 101 (445)
++|.+....+...++..+|....++ + .+.++.|++.+++.+...++++++|+++||+|||+.+++. .+++.
T Consensus 18 ~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~-~~l~~ 96 (491)
T 4gc0_A 18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA-AVLFF 96 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHH
Confidence 4566666556666666666655553 2 2346789999999999999999999999999999986544 33343
Q ss_pred HHHHH-H-------------------------H---------HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHH
Q 013324 102 VSFSS-V-------------------------F---------GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 146 (445)
Q Consensus 102 ~~~~~-~-------------------------~---------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~ 146 (445)
++..+ . + +.+........++.|..+ +++|++..++.+.+...|.
T Consensus 97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~~~~~~g~ 175 (491)
T 4gc0_A 97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQFAIIFGQ 175 (491)
T ss_dssp HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhhhhhhhhh
Confidence 33222 1 0 222233334466677775 7889999999988888888
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccccc-----ccccCC-------------c-
Q 013324 147 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK-----MGLRGN-------------S- 207 (445)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~-----~~~~~~-------------~- 207 (445)
+++..++..+........ .....||+.+.+..+..++..+.. +..||.++. +.++.+ +
T Consensus 176 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~ 252 (491)
T 4gc0_A 176 LLVYCVNYFIARSGDASW--LNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQA 252 (491)
T ss_dssp HHHHHHHHHHHTTSCTTT--TTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhcccccccc--ccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHH
Confidence 888777666543322111 124678888776655555544443 456664321 000000 0
Q ss_pred --chHHH---------HHHHHhchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHH
Q 013324 208 --HARIS---------WAYWFKKILYYQVALVYMLTRL-VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 275 (445)
Q Consensus 208 --~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l 275 (445)
+.++. ....++.++.........+... ..+....|. +++.+..+.+............+..+++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4gc0_A 253 VQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA-PEVFKTLGASTDIALLQTIIVGVINLTFTVL 331 (491)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcc-hHHHHhcCCCccchhhHHHHHHHHHHHHHHH
Confidence 00000 0011112222222222222222 233333444 4444445666555555555566667777777
Q ss_pred HHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHHHHHhH-hhhhHhhhcccccccccccchhH
Q 013324 276 LQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL--PMNMSAFMYVLAIFVGIANAL-MMVTGISMQNVLVGEDLSGCAFV 351 (445)
Q Consensus 276 ~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~ 351 (445)
.+++ +|++| |+....+...+.++.+.+... .....+..+....+...+.+. ..+..+.+..|..|.+.|+ ..
T Consensus 332 ~~~l~dr~Gr--r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~ 407 (491)
T 4gc0_A 332 AIMTVDKFGR--KPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KA 407 (491)
T ss_dssp HHHHHHHHCS--HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HH
T ss_pred HHHHHHhhcC--cchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HH
Confidence 7653 55554 455555555544444333221 122223323333333333222 2355677888899999998 77
Q ss_pred HhHHHHHHHHHHHHHHHHHHHc
Q 013324 352 CGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 352 ~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
.|+.+....+++.+++.+...+
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=196.17 Aligned_cols=335 Identities=10% Similarity=-0.024 Sum_probs=194.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-C------CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcc-CCchHHHHHH
Q 013324 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAG 96 (445)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g------~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~-Grrr~~ll~~ 96 (445)
..+...+..+..........++++.|+++. | .++.+.|++.+++.+...++.++.|+++||+ ||||.+++ +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~-~ 91 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW-L 91 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-H
Confidence 334455666677777778888999999885 9 9999999999999999999999999999999 99997544 3
Q ss_pred HHHHHHHHHHHH------------------HHHhhhhhHhhhhhhcccCccccchhhhH---HHHHHHHHHHHHHHHHHH
Q 013324 97 SVLVAVSFSSVF------------------GWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTMVANLSLYAIAFI 155 (445)
Q Consensus 97 ~i~~~~~~~~~~------------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~ 155 (445)
.+...++..+.. +.+....+..+++.+..+ +++|++..+. ...+..+|..+++.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 92 SLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322211 223344555677778775 6677665555 777777888887777666
Q ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cCCcc--------------hHHH--------
Q 013324 156 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSH--------------ARIS-------- 212 (445)
Q Consensus 156 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~--------------~~~~-------- 212 (445)
+.. ..+|++.+.+.+++.++..+...+..++.+.++++ +...+ ..+.
T Consensus 171 l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (524)
T 2xut_A 171 LLK----------NFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALI 240 (524)
T ss_dssp HHH----------TSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHH
T ss_pred Hhc----------cccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhh
Confidence 542 35799998877776666555443322221111000 00000 0000
Q ss_pred ------------------------------------HHHHH-----------hc-hHHHHHHHHH---HHHHHHHHHHHH
Q 013324 213 ------------------------------------WAYWF-----------KK-ILYYQVALVY---MLTRLVVNVSQA 241 (445)
Q Consensus 213 ------------------------------------~~~~~-----------~~-~~~~~~~~~~---~~~~~~~~~~~~ 241 (445)
++++. ++ |+.+...... .+..........
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (524)
T 2xut_A 241 GGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKAS 320 (524)
T ss_dssp HHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTT
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 00000 11 1111111111 111111111222
Q ss_pred HHHHHHHhhhcccc-hhhhHHHHHHHHHHHHHHHHHHH-----HHHhhhhh--hHHHHHHHHHHHHHHHHHhhcc-----
Q 013324 242 YLAFYVINDLRMGQ-SAKALVPAIIYICSFIVSILLQE-----MAWTGQRL--KAYYSAGGVLWVFCGAGILILP----- 308 (445)
Q Consensus 242 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ig~~l~~~-----~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~----- 308 (445)
+++.+..+ .+.+. ...+.......++.+++.++.++ ++|+.+|. ++.+..+.++.+++++.+.+..
T Consensus 321 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (524)
T 2xut_A 321 TWILQAND-MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDG 399 (524)
T ss_dssp HHHHHHHH-SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT
T ss_pred hhHHhHHh-cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333332 22211 11233333323333444433332 13333222 3445666666666655554432
Q ss_pred --CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 309 --MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 309 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..+.++..+..++.|++.+...+....+..+..|++.+| .+.|+.+....+|+.+++.+.+.+.
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG--TIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCT--TTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 134556667778899999998888888988899999999 8899999999999999999988775
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-09 Score=105.03 Aligned_cols=151 Identities=15% Similarity=0.096 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcccchhhhHHHHHHHHHHHHHHHHHHHH-HH-hhhhhhHHHHH
Q 013324 220 ILYYQVALVYMLTRLVVNVSQAYLAFYVIND-----LRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSA 292 (445)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~-~~~r~~~~~~~ 292 (445)
|.++......++.....+....+++.|+++. .|.+..+.++......++..++.++.|++ +| +++ |+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~--r~~~~~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA--RPAVFW 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH--HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hHHHHH
Confidence 3455666666677777778888999999887 89999999999888899999999988864 33 233 677788
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHH
Q 013324 293 GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372 (445)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~ 372 (445)
+.++..++.+...+. ++.+.+++..++.|++.+...+....+..+..|+++++++...+.++....+|..+++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 168 (491)
T 4aps_A 91 GGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA 168 (491)
T ss_dssp HHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 888877777666653 366777788889999999999988899888888877443377888888888888888887776
Q ss_pred cc
Q 013324 373 YQ 374 (445)
Q Consensus 373 ~~ 374 (445)
+.
T Consensus 169 l~ 170 (491)
T 4aps_A 169 AQ 170 (491)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.3e-09 Score=101.91 Aligned_cols=143 Identities=16% Similarity=0.123 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHh
Q 013324 227 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL 305 (445)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~ 305 (445)
+..+.............|. +++++|.+..+.+++.....++..++.++.+++ +|+++ |+.+..+.++.+++.++..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~--r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY--KAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc--hHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555 566789999999999898888889898888854 33333 7778888888877776662
Q ss_pred hc-cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 306 IL-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 306 ~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
.. ..++.+.+++..++.|++.+...+....+..+..|+++++ ...+..+....+|..+++.+.+.+.
T Consensus 110 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 110 PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1347778888889999999999999999999999999998 7788888888888888888766654
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-09 Score=101.61 Aligned_cols=148 Identities=12% Similarity=0.091 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHH
Q 013324 220 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 298 (445)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~ 298 (445)
+.+....+..+...........++|.+.++ . .+..+.+++.....++..++.++.|++ +|+++ |+.+..+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~--r~~l~~~~~~~~ 103 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP--RVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCc--hHHHHHHHHHHH
Confidence 334444445555555555566666666554 5 888888888888888889988888864 33333 677888888888
Q ss_pred HHHHHHhhcc--CchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHc
Q 013324 299 FCGAGILILP--MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 373 (445)
Q Consensus 299 ~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~ 373 (445)
++.+...+.+ .++.+.+++..++.|++.+...+...++..+..|+++++ .+.++.+....+|..+++.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766621 236667778888999999999998889999999989888 888888888888888887766554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.2e-09 Score=102.84 Aligned_cols=153 Identities=8% Similarity=-0.026 Sum_probs=113.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------ccchhhhHHHHHHHHHHHHHHHHHHHH-HHh-hhhhhHHH
Q 013324 219 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR------MGQSAKALVPAIIYICSFIVSILLQEM-AWT-GQRLKAYY 290 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~-~~r~~~~~ 290 (445)
+|.++...+..++.....+....+++.|++++.| .+..+.+++.....++..++.++.|++ +|+ ++ |+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~--r~~~ 88 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGK--YNTI 88 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCS--HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHH
Confidence 3455666667777777777888999999998889 999888988888888889998888865 333 33 6677
Q ss_pred HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccc-hhHHhHHHHHHHHHHHHHHHH
Q 013324 291 SAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGC-AFVCGTLSFLDKMSCGIAVYV 369 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ig~~i~~~l 369 (445)
..+.++..++.+...+.+ .+.+.+++..++.|++.+...+...++..+..|++++|. ...++..+....+|..+++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666655532 256667777889999999999988899999888888872 123444777888888888876
Q ss_pred HHHcc
Q 013324 370 LQSYQ 374 (445)
Q Consensus 370 ~~~~~ 374 (445)
.+.+.
T Consensus 168 ~~~l~ 172 (524)
T 2xut_A 168 MPLLL 172 (524)
T ss_dssp STHHH
T ss_pred HHHHh
Confidence 65543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=98.45 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=97.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHh-CC---CHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHH
Q 013324 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GL---SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (445)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~ 102 (445)
+.+.+..+............+|.|+.+. +. +....|.+.++..+...++.++.|+++||+||||... .+.+..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~-~~~~~~~~ 301 (417)
T 2cfq_A 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL-LAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH-HHHHHHHH
Confidence 3333333333333334444578888775 42 3456788888888888899999999999999988744 33333333
Q ss_pred HHHHHH-----------------HHHhhhhhHhhhhhhcccCccccchhhhHH-HHHHHHHHHHHHHHHHHHHHhhcccc
Q 013324 103 SFSSVF-----------------GWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKT 164 (445)
Q Consensus 103 ~~~~~~-----------------~~~~~~~~~~al~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~ 164 (445)
...... .......+...+..+..+ ++.|+...+.. +....+|..+++.+++.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~------ 374 (417)
T 2cfq_A 302 RIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE------ 374 (417)
T ss_dssp HHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH------
Confidence 322211 111222233445566554 66787777663 55566777787777776653
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 013324 165 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 199 (445)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 199 (445)
..++...+.+.+++.++..++.++..||+++
T Consensus 375 ----~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 375 ----SIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp ----HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred ----hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 3467777777777777666665555666443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-08 Score=95.41 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHH
Q 013324 226 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAG 303 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~ 303 (445)
.+..++...........+|.+ .++.|.++.+.+.......++..++.+..+++ .||+ |+.+..+..+..++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPI---SDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHH---HTTSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCchhHHHHHHHHHHHHHH
Confidence 334444445555556666665 45679999888888888888888888888754 4444 66677777777777666
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHHcc
Q 013324 304 ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~~~ 374 (445)
..+. ++.+..++..++.|++.+...+....+..+..|+++++ ...+..+....+|..+++.+.+.+.
T Consensus 82 ~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 82 AVTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6554 36777778888999999998888888888888888888 7888999999999999998887765
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.6e-08 Score=94.83 Aligned_cols=155 Identities=14% Similarity=-0.012 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHH-----------
Q 013324 40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF----------- 108 (445)
Q Consensus 40 ~~~~~~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~~----------- 108 (445)
.+.+..+.+.+..+.+.+.........+..+...+..++.+++.||+|||+..+. +.....++.....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 371 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII-GALGMAIGMFSLGTAFYTQAPGIV 371 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH-HHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc-chHHHHHHHHHHHHHHhcccchHH
Confidence 3444456666666678888888888888888899999999999999999987543 3333333322211
Q ss_pred ----------HHHhhhhhH-hhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 013324 109 ----------GWAATQVAH-MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY 177 (445)
Q Consensus 109 ----------~~~~~~~~~-~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 177 (445)
++.....|. ..+.+|+.+ .+.|+...++......++..+++.+.+.+...... ....++.+.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----~~~~~~~~~~~ 446 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL----VAHFHNGFSYW 446 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHH
Confidence 111111122 244567665 67799999988888788888777665554321100 01233445667
Q ss_pred HHHHHHHHHHHHHhccccccccc
Q 013324 178 SSIFIGCCFVGIFLSRTEEPRLK 200 (445)
Q Consensus 178 ~~~~~~~i~~~~~~~~~~e~~~~ 200 (445)
+.++++++..++.++..||.+.+
T Consensus 447 i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 447 IYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHheecCCCCC
Confidence 77777888877777888997644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.92 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.1e-29 Score=247.53 Aligned_cols=318 Identities=12% Similarity=0.027 Sum_probs=217.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHH-H---------------
Q 013324 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-F--------------- 108 (445)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~~~~~~~~~-~--------------- 108 (445)
+.+.+++.|.|+|++++|++.+++.+..++++++.|+++||+||||.+++ +.+...++..+. +
T Consensus 45 ~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (447)
T d1pw4a_ 45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA-GLILAAAVMLFMGFVPWATSSIAVMFVLL 123 (447)
T ss_dssp HHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH-HHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence 34445677789999999999999999999999999999999999997544 444343333221 1
Q ss_pred -----HHHhhhhhHhhhhhhcccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Q 013324 109 -----GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG 183 (445)
Q Consensus 109 -----~~~~~~~~~~al~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 183 (445)
+.+....+..+++.+..+ +++|+++.++...+..+|..+++.++..+... ..+||+.+.+.+++.
T Consensus 124 ~~~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~---------~~~w~~~~~~~~~~~ 193 (447)
T d1pw4a_ 124 FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---------FNDWHAALYMPAFCA 193 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---------TCCSTTCTHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHHH-hhcccccccccccccchhhhhhhhhhhhHhhh---------hhcccccchhhhhhH
Confidence 222334445566777765 77899999999999889988888777666543 246888777766666
Q ss_pred HHHHHHHhccccccccccc----cc---------------CCcchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013324 184 CCFVGIFLSRTEEPRLKMG----LR---------------GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 244 (445)
Q Consensus 184 ~i~~~~~~~~~~e~~~~~~----~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
++..++.++..+|++++.. ++ +....+...++.+++|.++......++..........+.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (447)
T d1pw4a_ 194 ILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSP 273 (447)
T ss_dssp HHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhh
Confidence 6665555555554322110 00 0011223456677888888887777777777888889999
Q ss_pred HHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhH-HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 013324 245 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 322 (445)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (445)
.|+.+..+.+....+.......+..+++.++.+++ +|..++.+. .......+...+..........+.+...+..++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
T d1pw4a_ 274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353 (447)
T ss_dssp HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 99999999998888888888888888999888865 444443322 2222223323333333333344566666777788
Q ss_pred HHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHH-HHHHHHHHHHccc
Q 013324 323 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS-CGIAVYVLQSYQS 375 (445)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig-~~i~~~l~~~~~~ 375 (445)
|++.+...+....+..+..|++.+| .+.|+.+....++ ..+++.+.+.+.+
T Consensus 354 g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~g~~~~~~~~g~~~~ 405 (447)
T d1pw4a_ 354 GFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVGYTVD 405 (447)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777778888888999988 8888887777764 4456666666543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.3e-25 Score=210.53 Aligned_cols=336 Identities=10% Similarity=0.040 Sum_probs=203.2
Q ss_pred CchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH
Q 013324 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~l~~~~~i~~~i~~p~~G~l~Dr~Grrr~~ll~~~i~ 99 (445)
+|+++.+.+++..+...+......+++|.|++|. |+|++++|++.+++.+...+.+|++|+++||+||||++++...+.
T Consensus 4 lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 3557788888888889999999999999999886 999999999999999999999999999999999999865443333
Q ss_pred HHHHHHHHH------------HHH--------hhhhhHhhhhhhcc-cCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013324 100 VAVSFSSVF------------GWA--------ATQVAHMSMVNCIT-LNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 158 (445)
Q Consensus 100 ~~~~~~~~~------------~~~--------~~~~~~~al~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 158 (445)
......... ... ....+......+.. ++.+++.+..+........+..+++.+++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 222222211 000 00011111111111 112334445555556666677777766666543
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccc------ccCCcchHHHHHHHHhchHHHHHHHHHHHH
Q 013324 159 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG------LRGNSHARISWAYWFKKILYYQVALVYMLT 232 (445)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (445)
.+|++.+........+..++..+..+|++.+++ ++++...+....+..+++..+.........
T Consensus 164 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T d1pv7a_ 164 -----------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp -----------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred -----------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHH
Confidence 344444444444444444444444444322111 111222334445555665555444443333
Q ss_pred HHHHHHHHHHHHHHHHh---hhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhc
Q 013324 233 RLVVNVSQAYLAFYVIN---DLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILIL 307 (445)
Q Consensus 233 ~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~ 307 (445)
...........+.+... ..+.+....+.......++..++..+.+ ++.||. |+.+..+..+..++.+.+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 309 (417)
T d1pv7a_ 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAP---LIINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHH---HHHHHHCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhh---hhhcccccccchhhhHHHHHHhhhccccc
Confidence 33333333333333332 2333444444455555555666665555 445554 566777777777666666554
Q ss_pred cCchhHHHHHHHHHHHHHHhHhhhhHhhhcccccccccccchhHHhH-HHHHHHHHHHHHHHHHHHcc
Q 013324 308 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 374 (445)
Q Consensus 308 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ig~~i~~~l~~~~~ 374 (445)
++.+..++..++.|++.+...+....+..+..|++.+| ...++ .++...+|..+++.+.+.+.
T Consensus 310 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 310 --TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred --cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888999999999998889999999999988 66665 35566677777777666654
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=2e-08 Score=95.45 Aligned_cols=126 Identities=12% Similarity=0.106 Sum_probs=96.1
Q ss_pred HHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhcc--CchhHHHHHH
Q 013324 242 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--MNMSAFMYVL 318 (445)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 318 (445)
...+++++ .|.+..+.+++.+...++..++.++.|++ +|+++ |+.+..+.++..++.+...+.+ .++.+..++.
T Consensus 46 ~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (447)
T d1pw4a_ 46 LAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP--RVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 122 (447)
T ss_dssp HHHHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHH
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Confidence 34445554 69999999999999999999999888864 33333 6777777777776666555432 2355667777
Q ss_pred HHHHHHHHhHhhhhHhhhcccccccccccchhHHhHHHHHHHHHHHHHHHHHHH
Q 013324 319 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 372 (445)
Q Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~i~~~l~~~ 372 (445)
.++.|++.+...+....+..+..|++++| ...++.+....+|..+++.+...
T Consensus 123 ~~~~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHhhccc--ccccccccccchhhhhhhhhhhh
Confidence 88999999998888888998889999999 88888888888888887765544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=3.6e-09 Score=98.92 Aligned_cols=89 Identities=12% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHH
Q 013324 216 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGG 294 (445)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ig~~l~~~~-~~~~~r~~~~~~~~~ 294 (445)
.+|||++|.+.+..++..........++|.|++++.|.++.+.+++.....++..+++++.|++ ||+++ |+.+..+.
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~gr--r~~l~~~~ 80 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGL--RKYLLWII 80 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--CTHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHH
Confidence 5799999999998888888888888999999999999999999999999999999999888864 44333 56666666
Q ss_pred HHHHHHHHHHhh
Q 013324 295 VLWVFCGAGILI 306 (445)
Q Consensus 295 ~~~~~~~~~~~~ 306 (445)
....++......
T Consensus 81 ~~~~~~~~~~~~ 92 (417)
T d1pv7a_ 81 TGMLVMFAPFFI 92 (417)
T ss_dssp HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555555444
|