Citrus Sinensis ID: 013355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
Protein Sequence
MCCIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLPKSVVQELCHGALTSTDISSRDLRQSVGGPNVKLPTQSNLHSNHACQRDTLTTKSNGTPRFETSLSKLSPQEVNADPSVSHCNPLLGGIEEIHSITQQQVLQTSKELKGKNWIVCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGVYHEVQGKLEVPPVLTHEVISRDSSRIQSKYQTVSLQGEN
Secondary Structure (PSIPRED)
ccccccccccccccccccEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccccccHHHHHHHHcccccEEEEEEccccccHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHccEEEEEEEccEEEEEEEccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEEEEEcccccccccHHHHHHHHccEEEEEEEEccccccccHHHEEEEccccccccEEHHHHHHHcccccEEEHHHHHcccccccccHHcccccccEEEccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEcccccHHHHccccccccccccccccccccccccccHHccccccccccccccccccccccccccEEEEEEEEEcccccccHccccEEcccccccHHHHHHHHHcccEEEEEEcccHHccHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHccEEEEEEEccEEEEEEEcccccHHccEEcccEEEEEEEEccccccccccccccccccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
mcciacyeltctfnshicqqidgrrhDFVNAVQFGHFmlqvkpcdicgdggwpeqiATCYLCKSAREHIYCMKFLLFSRPIVWFCEECrsikgqvlpKSVVQELCHgaltstdissrdlrqsvggpnvklptqsnlhsnhacqrdtlttksngtprfetslsklspqevnadpsvshcnpllggIEEIHSITQQQVLQTSkelkgknwivckEEPVEILEAMGSrvevaaditpppsvnalpiissaqsfdiqtsnldpndepdnsflLTSYAIWCGSIEmlsldtsskfydgfwaylpckiHRKVLEfskempgviscssvpccnislevfqndmpniddialiffpgnfqrsKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQanssgfklgSFLWGVYHEvqgklevppvlthevisrdssriqsKYQTVSLQGEN
Flexible Loop (DISEMBL)
MCCIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLPKSVVQELCHGAltstdissrdlrQSVGGPNVKlptqsnlhsnhacqrdtlttksngtprfETSLSKLSPQEVNADPSVSHCNPLLGGIEEIHSITQQQVLQtskelkgknwiVCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGVYHEVQGKLEVPPVLTHEvisrdssriqskyqtvslqgen
Low Complexity Region (SEG)
MCCIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLPKSVVQELCHGALTSTDISSRDLRQSVGGPNVKLPTQSNLHSNHACQRDTLTTKSNGTPRFETSLSKLSPQEVNADPSVSHCNPLLGGIEEIHSITQQQVLQTSKELKGKNWIVCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSllelleMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGVYHEVQGKLEVPPVLTHEVISRDSSRIQSKYQTVSLQGEN
Disordered region (IsUnstruct)
*CCIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLPKSVVQELCHGALT*******************************************************************CNPLLGGIEEIHSITQQQVLQTSKELKGKNWIVCKEEPVEILEAMGSRVEVAADI********LPI**********************SFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGVYHEVQGKLEVPPVLTHEVI********************
Disordered Region (DISOPRED)
MCCIACYELTCTFNSHICQQI************FGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECR******************************************************************************************************************************************************************************DNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYL*******VLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRS*EQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGVYH*************************************
Disordered Region (DISEMBL)
MCCIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLPKSVVQELCHGALTSTDISSRDLRQSVGGPNVKLPTQSNLHSNHACQRDTLTTKSNGTPRFETSLS************VSHCNPLLGGIEEIHSITQQQVLQTSKELKGKNWIVCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGVYHEVQGKLEVPPVLTHEVISR******************
Disordered Region (DISPRO)
MCCIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK************CHG****************************************************************************************************WIV***E*******************************************DPNDEPDNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGVYHEVQ**********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCCIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLPKSVVQELCHGALTSTDISSRDLRQSVGGPNVKLPTQSNLHSNHACQRDTLTTKSNGTPRFETSLSKLSPQEVNADPSVSHCNPLLGGIEEIHSITQQQVLQTSKELKGKNWIVCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGVYHEVQGKLEVPPVLTHEVISRDSSRIQSKYQTVSLQGEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
255547209	519	hypothetical protein RCOM_1469890 [Ricin	0.878	0.751	0.307	1e-41
357457345	560	PHD-finger family protein expressed [Med	0.806	0.639	0.273	3e-30
356507076	649	PREDICTED: uncharacterized protein LOC10	0.378	0.258	0.375	8e-26
255547207	565	conserved hypothetical protein [Ricinus	0.396	0.311	0.327	4e-19
413942611	1147	hypothetical protein ZEAMMB73_797679 [Ze	0.328	0.127	0.353	2e-16
242094430	518	hypothetical protein SORBIDRAFT_10g00110	0.299	0.256	0.360	3e-15
218186758	1305	hypothetical protein OsI_38169 [Oryza sa	0.324	0.110	0.337	4e-15
222617003	1305	hypothetical protein OsJ_35943 [Oryza sa	0.324	0.110	0.337	4e-15
108862589	1267	PHD-finger family protein, expressed [Or	0.324	0.113	0.337	5e-15
357443745	369	hypothetical protein MTR_1g099270 [Medic	0.698	0.840	0.243	7e-15

>gi|255547209|ref|XP_002514662.1| hypothetical protein RCOM_1469890 [Ricinus communis] gi|223546266|gb|EEF47768.1| hypothetical protein RCOM_1469890 [Ricinus communis]

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 230/484 (47%), Gaps = 94/484 (19%)

Query: 41  VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLPKSV 100
           V+ C +CGD G+ E+I TC+ C+  +EH+YCM  LL + P +W CE C+S + +   +S 
Sbjct: 10  VRTCHVCGDTGFLEKIVTCFQCEITQEHVYCMPVLLLTVPKIWICEVCQSSEEKDSQQSF 69

Query: 101 VQELCHGALT--STDISSRDLRQSVG-------GPNVKLPTQSNLHS---NHACQRDTLT 148
                   LT  +++I   D  +S+        G  +    ++ + +   N  C  + + 
Sbjct: 70  TGAHFPRILTPLNSEIVYSDTVKSIAVEFLENSGSLLNFQNETAIGTGKLNFICSEEVIE 129

Query: 149 TKS------NGTPRFETSL---------------------SKLSPQEVNADPSVS-HCNP 180
             S      N +P  + S+                     SK S Q V A PS+      
Sbjct: 130 QPSGVLKVENFSPSIQGSIFGQSTAIMVSSRTDIGFKIPPSKFSKQIVKASPSIRIQERS 189

Query: 181 LLGGIEEIHS--ITQQQVLQTSKE---LKGKNWIVCKEEPVEIL------EAMGSRVEVA 229
           LL G +   S   T++QV +   +   L  ++    K+EPV++L      E+  S +  A
Sbjct: 190 LLPGQDGAESSLKTKRQVCKIKDKGTALAYQDKYALKKEPVDLLLPAKRVESPNSTLRKA 249

Query: 230 ADITPPPSVNALPIISSAQSFDIQTS------------------NLDPNDEP----DNSF 267
              T  PS+N   I  S +   ++ S                  ++D N +     DN  
Sbjct: 250 TKFTHSPSMNFQTITHSGKEVSLEYSTVIWLQLLTKDCMLGRSLHVDVNFKSLGIQDNDI 309

Query: 268 L-----LTSYAI--------WCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMP 314
           L     L  Y++        WCGS E+    + S+F+DGF AY+P  +H K  EFSK+MP
Sbjct: 310 LNTLPKLEKYSLHNPAPKVTWCGSFEISYAVSHSEFFDGFRAYVPGGVHCKAFEFSKQMP 369

Query: 315 GVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKS 374
            V+ C+ +P    SLEV+Q+  PN +D  L FFP NF+RS +QY+ LL +LEM+DL+L S
Sbjct: 370 RVLPCTMLPSS--SLEVYQHGYPNGNDSVLYFFPINFERSTQQYERLLVMLEMQDLLLIS 427

Query: 375 CINGVELLIFSSKILQANSSGFKLGSFLWGVYHEVQGKLEVPPV----LTHEVISRDSSR 430
            + GV+LL+F SK L  +  G +   FL GVY  V+ +L V P+     T +  S D  +
Sbjct: 428 SVCGVKLLVFPSKRLNVDFHGSE--RFLCGVYRPVKSELGVLPLPFCGATSQAQSFDDQQ 485

Query: 431 IQSK 434
            +SK
Sbjct: 486 TKSK 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457345|ref|XP_003598953.1| PHD-finger family protein expressed [Medicago truncatula] gi|355488001|gb|AES69204.1| PHD-finger family protein expressed [Medicago truncatula]

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 179/432 (41%), Gaps = 74/432 (17%)

Query: 41  VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLPKSV 100
           V+PCDICG  G+ E I TC  CK  REH+YCMK  L   P  W CE C+S  G       
Sbjct: 11  VEPCDICGHFGFGEVIVTCSKCKVNREHVYCMKINLMEVPDYWLCEPCQSNNGST----- 65

Query: 101 VQELCHGALTSTDISSRDLRQSVGGPNVKL----------------------PTQSNLHS 138
               C     S   +S+  + +  GP  K+                      P+ SNL  
Sbjct: 66  --SQCIAKQDSGLQASKRQQSARTGPRGKVKYLQEDEVIKLSSCNVSIKPTPPSSSNLLM 123

Query: 139 NHACQ--RDTLTTKSNGTPRFETSLSKLSPQEVNADPSVSHCN----PLLGG----IEEI 188
                  R  L+    G    ++ L+K+       +PS+S       P  GG    I  +
Sbjct: 124 TRKVNPGRPALSMTRRGRVASKSLLTKIPSLTPKPNPSISPMAHGMFPRNGGQKNPITNL 183

Query: 189 HSITQQQVLQTSKELKGKNWIVCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQ 248
           H+ +    L+  +    +   V    P   ++    R+E     +P   ++A   +  A 
Sbjct: 184 HASSSLGPLKEHRLASERR--VGPPIPNRKVQYADLRIEKRTRESPNNDLSATKSVPVAV 241

Query: 249 SFDIQTSNLDPNDEPDNSFL----------LTSYAIWCGSIEMLSLDTSSKFYDGFWAYL 298
           S   + + L+       SF+           +S   W G  ++     S   YDGF A  
Sbjct: 242 SDVAEYNVLNMEKSKIQSFVENFPRYQKYFPSSIRAWSGQFQIRQEAASGGIYDGFEAQP 301

Query: 299 PCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPGNFQ------ 352
           PC I+RK    S ++P V+   S+P  N+  + FQN  P++ DIAL FFP +        
Sbjct: 302 PCTINRKAYNLSSKIPSVLQLESLPALNVLTDEFQNYSPSLQDIALYFFPSDNNERSAFA 361

Query: 353 -------------RSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSG---- 395
                        +S++  ++LL+ +   +L+L+S INGVEL +F+S  L  +S G    
Sbjct: 362 SYVDTLSSVVICDKSRKNLNNLLKFMNDENLMLRSLINGVELFLFTSHKLSDDSRGTIAV 421

Query: 396 FKLGSFLWGVYH 407
              G FLWGV+ 
Sbjct: 422 VHEGYFLWGVFR 433

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507076|ref|XP_003522297.1| PREDICTED: uncharacterized protein LOC100796899 [Glycine max]

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 267 FLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCN 326
           FL +S+  W G  ++L    SS+FYDG  A  PC +++K  +FS EMP V+   S+P  N
Sbjct: 437 FLPSSFPAWRGQFQILQTAVSSEFYDGLEAQPPCIVNKKAYKFSTEMPSVLQLESLPVLN 496

Query: 327 ISLEVFQNDMPNIDDIALIFFPGNF-QRSKEQYDSLLELLEMRDLVLKSCINGVELLIFS 385
              ++FQ++ P + DIAL FFP    +RS++  DS+L+ L     +L+S INGVELL+F+
Sbjct: 497 ALTDIFQDNSPRLQDIALYFFPSELTERSRKNLDSILKFLNAEKSMLRSYINGVELLVFT 556

Query: 386 SKILQANSSG----FKLGSFLWGVYHEVQGKLEVPPVLTHEVISRDSSRIQSK 434
           S  L  +S G       G FLWG++ + +    +  V   E +  D   I  K
Sbjct: 557 SNQLDMDSKGAIAAVNAGHFLWGMFRQKKIDKAIERVPDMEPVDMDIDMIGGK 609

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547207|ref|XP_002514661.1| conserved hypothetical protein [Ricinus communis] gi|223546265|gb|EEF47767.1| conserved hypothetical protein [Ricinus communis]

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 10/186 (5%)

Query: 239 NALPIISSAQSFDIQTSNLDPNDEPDNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYL 298
           ++ P++ S +  D++    DPN    + F       W G  + +      KFY GF A  
Sbjct: 294 DSFPVVESKKP-DVE--GRDPNLCLYHPFFPALNVTWKGGFKFIDTAKPGKFYGGFQAQP 350

Query: 299 PCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDDIALIFFPG-NFQRSKEQ 357
           P ++ R+  E +++MP V+    +P  ++  +VFQ D P+  DIAL FFP  N +RSK+ 
Sbjct: 351 PSRVSRRAYELAQKMPIVLQIELLPR-HVWADVFQKDYPDFRDIALYFFPSENTERSKDN 409

Query: 358 YDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGF----KLGSFLWGVYHEVQGKL 413
           + S  +L+E++  VL++ I+ VELLIF+SK L  +S        +  F+WGV+   + + 
Sbjct: 410 HASFFKLMEIQSSVLRTYISDVELLIFTSKQLHRDSQDVIERSGMEHFIWGVFRRAK-RD 468

Query: 414 EVPPVL 419
           + PP L
Sbjct: 469 QFPPEL 474

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413942611|gb|AFW75260.1| hypothetical protein ZEAMMB73_797679 [Zea mays]

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 74/147 (50%)

Query: 261 DEPDNSFLLTSYAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCS 320
           DEP +S +     IW G  E+    +S +  DGF A+L C   + VL+  K+ P  +   
Sbjct: 732 DEPTSSTVPELGWIWQGGFELQRTGSSPELCDGFQAHLSCSASQLVLDAVKKFPSKVQLE 791

Query: 321 SVPCCNISLEVFQNDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVE 380
            VP  N     FQ + P  D+I L FF  + Q  +  Y  L+E +   DLVL+  +  VE
Sbjct: 792 EVPRKNSWPTQFQKNGPTYDNIGLFFFARDVQSYENHYSKLVENMLKNDLVLRGSVGTVE 851

Query: 381 LLIFSSKILQANSSGFKLGSFLWGVYH 407
           LLIF S IL  N   + +  FLWG++ 
Sbjct: 852 LLIFPSNILSKNFQRWNMLYFLWGLFR 878

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242094430|ref|XP_002437705.1| hypothetical protein SORBIDRAFT_10g001106 [Sorghum bicolor] gi|241915928|gb|EER89072.1| hypothetical protein SORBIDRAFT_10g001106 [Sorghum bicolor]

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 67/133 (50%)

Query: 274 IWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQ 333
           IW G  E+     S +  DGF A+L C   + VL+  K+ P  +    VP  N     FQ
Sbjct: 68  IWQGGFELQRTGRSPELCDGFQAHLSCSASQLVLDVVKKFPSKVQLEEVPRQNSWPTQFQ 127

Query: 334 NDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANS 393
            + P  D+I L FF  + Q  +  Y  L+E +   DLVL+  +  VELLIF S IL  N 
Sbjct: 128 ENGPTYDNIGLFFFARDVQSYENHYSKLVENMLKNDLVLRGSVGTVELLIFPSNILSKNF 187

Query: 394 SGFKLGSFLWGVY 406
             + +  FLWG++
Sbjct: 188 QRWNMFYFLWGLF 200

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218186758|gb|EEC69185.1| hypothetical protein OsI_38169 [Oryza sativa Indica Group]

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 1/145 (0%)

Query: 274 IWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQ 333
           IW G  E+     S +  DGF A+L C    KVLE +K+ P  +    +P  N     FQ
Sbjct: 788 IWQGGFELRRTGRSPELCDGFQAHLSCSASPKVLEVAKKFPSKVQLEELPRQNSWPTQFQ 847

Query: 334 NDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANS 393
            + P+ ++I L FF  +    +  Y  L+E +   DL L+  I   ELLIF S IL  N 
Sbjct: 848 ENGPSYENIGLFFFARDTDSYENYYSKLVENMLKNDLALRGNIETAELLIFPSNILSKNF 907

Query: 394 SGFKLGSFLWGVYH-EVQGKLEVPP 417
             + +  FLWGV+    + ++ +PP
Sbjct: 908 QRWNMFYFLWGVFRVRKKDQMNIPP 932

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617003|gb|EEE53135.1| hypothetical protein OsJ_35943 [Oryza sativa Japonica Group]

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 1/145 (0%)

Query: 274 IWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQ 333
           IW G  E+     S +  DGF A+L C    KVLE +K+ P  +    +P  N     FQ
Sbjct: 788 IWQGGFELWRTGRSPELCDGFQAHLSCSASPKVLEVAKKFPSKVQLEELPRQNSWPTQFQ 847

Query: 334 NDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANS 393
            + P+ ++I L FF  +    +  Y  L+E +   DL L+  I   ELLIF S IL  N 
Sbjct: 848 ENGPSYENIGLFFFARDTDSYENYYSKLVENMLKNDLALRGNIETAELLIFPSNILSKNF 907

Query: 394 SGFKLGSFLWGVYH-EVQGKLEVPP 417
             + +  FLWGV+    + ++ +PP
Sbjct: 908 QRWNMFYFLWGVFRVRKKDQMNIPP 932

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108862589|gb|ABA97690.2| PHD-finger family protein, expressed [Oryza sativa Japonica Group]

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 1/145 (0%)

Query: 274 IWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQ 333
           IW G  E+     S +  DGF A+L C    KVLE +K+ P  +    +P  N     FQ
Sbjct: 751 IWQGGFELWRTGRSPELCDGFQAHLSCSASPKVLEVAKKFPSKVQLEELPRQNSWPTQFQ 810

Query: 334 NDMPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANS 393
            + P+ ++I L FF  +    +  Y  L+E +   DL L+  I   ELLIF S IL  N 
Sbjct: 811 ENGPSYENIGLFFFARDTDSYENYYSKLVENMLKNDLALRGNIETAELLIFPSNILSKNF 870

Query: 394 SGFKLGSFLWGVYH-EVQGKLEVPP 417
             + +  FLWGV+    + ++ +PP
Sbjct: 871 QRWNMFYFLWGVFRVRKKDQMNIPP 895

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443745|ref|XP_003592150.1| hypothetical protein MTR_1g099270 [Medicago truncatula] gi|355481198|gb|AES62401.1| hypothetical protein MTR_1g099270 [Medicago truncatula]

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 147/374 (39%), Gaps = 64/374 (17%)

Query: 44  CDICGDGGWPEQIATCYLCKSAREHIYCMKF-LLFSRPIVWFCEECRSIKGQVLPKSVVQ 102
           C  CGD G+PE I  C  C++   H YC+   ++F+  ++WFCE+C        P++   
Sbjct: 53  CLTCGDVGFPEAIVFCTECQACALHRYCLDGPVIFTDEVIWFCEDCE-------PEAKRL 105

Query: 103 ELCHGALTSTDISSR-DLRQSVGGPNVKLPTQSNLHSNHACQRDTLTTKSNGTPRFETSL 161
           +   G L    I SR  L+  V G  +K   Q N          TL++ S  +   E   
Sbjct: 106 KTNSGNLARIAIQSRAKLKYCVKG--LKKSKQQNKKEMEEKPSKTLSSNSRCSTELEHPQ 163

Query: 162 SKLSPQEVNADPSVSHCNPLLGGIEEIHSITQQQVLQTSKELKGKNWIVCKEEPVEILEA 221
           S  S  + +   S + C P+    +  +S    + +Q S+     + I+  E        
Sbjct: 164 SDTSHNQESE--SKNECGPV--PTDAANSNVDSKPVQISQATATDDLIIALEG------- 212

Query: 222 MGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLLTSYAIWCGSIEM 281
                           V+A PI              DP              IW G++  
Sbjct: 213 ---------------HVDAKPIA-------------DP--------------IWRGNLIF 230

Query: 282 LSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDD 341
                +    +G  A+L      KVL+  K  P V+S   +P   +    F+ + P  + 
Sbjct: 231 CDKSKTIGRVNGLLAHLSNIASPKVLDEMKFFPHVLSADLLPRSEVWPNSFKEEGPTDES 290

Query: 342 IALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSF 401
           IAL FFPGN + S + +D L++ +   +  ++       LLIF S +L      F+   +
Sbjct: 291 IALYFFPGNRRLSIKAFDKLVDDIICTEAAVRVVTENAVLLIFPSDLLPIRHQKFQTKYY 350

Query: 402 LWGVYHEVQGKLEV 415
           LWGV+ + Q   E 
Sbjct: 351 LWGVFKKKQTSHET 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
TAIR|locus:2159421	426	AT5G61120 [Arabidopsis thalian	0.324	0.338	0.307	6.8e-17
TAIR|locus:2029147	431	AT1G43770 "AT1G43770" [Arabido	0.295	0.303	0.268	8.2e-12
TAIR|locus:2159406	161	AT5G61110 [Arabidopsis thalian	0.108	0.298	0.520	1.5e-10
TAIR|locus:2159481	657	AT5G61090 [Arabidopsis thalian	0.324	0.219	0.291	5.1e-08
TAIR|locus:2159396	227	AT5G61100 [Arabidopsis thalian	0.112	0.220	0.442	1.7e-07

TAIR|locus:2159421 AT5G61120 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
 Identities = 47/153 (30%), Positives = 72/153 (47%)

Query:   272 YAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEV 331
             + IW G I  +   T S+F   F A    K+  K    SK +P ++    VP  N+   +
Sbjct:   233 HPIWKGRI--VDSATPSEFNGEFLAQPASKVRGKAYILSKAIPVLLKVKLVPIGNLLSGL 290

Query:   332 FQNDMPNIDDIALIFFPG--NFQRSKEQYDSXXXXXXMRDLVLKSCINGVELLIFSSKIL 389
             F N  P + D+ +  FP   N +R   + D       +R+ ++K  ING  LLIFSSK+L
Sbjct:   291 FMNRKPGLSDVEMYIFPDDKNTKRFTAERDHIFEAMRIRNAMMKFNINGTPLLIFSSKLL 350

Query:   390 QANSSGF-----KLGSFLWGVYHEVQGKLEVPP 417
               +S        K  +FLWG++   +  L + P
Sbjct:   351 DKSSQIIIKMQKKTNNFLWGIFLLTKKSLALLP 383

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2029147 AT1G43770 "AT1G43770" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
 Identities = 36/134 (26%), Positives = 65/134 (48%)

Query:   274 IWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVF- 332
             IW G + +   ++ +   DG  A++      KV E +  + G +S   +P   +  + F 
Sbjct:   292 IWRGLMSVKGGNSCTM--DGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKTFL 349

Query:   333 QNDMPNIDDIALIFFPGNFQRSKEQYDSXXXXXXMRDLVLKSCINGVELLIFSSKILQAN 392
             +N  P  + +AL FFP +    ++ +DS        D  ++  +N  ELL+F+S +L  +
Sbjct:   350 KNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSYMLPKD 409

Query:   393 SSGFKLGSFLWGVY 406
             S  F    +LWGV+
Sbjct:   410 SWTFNSKYYLWGVF 423

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2159406 AT5G61110 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query:    42 KPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECR 89
             KPC++CG       I TC+LC+  REHIYC +  L S P +W CEECR
Sbjct:    31 KPCEVCGSNANDHAIMTCFLCRDTREHIYCARVHLRSVPRMWICEECR 78

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2159481 AT5G61090 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 46/158 (29%), Positives = 75/158 (47%)

Query:   275 WCGSIEMLSLDTSS--KFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVF 332
             W G I    +D++S  +F   FW+     I RK L  SK MP ++    +P C+I  +V 
Sbjct:   291 WNGRI----MDSASPPEFDCEFWSKPASNIRRKALRRSKAMPALLKVELLPTCHILNDV- 345

Query:   333 QNDMPNIDDIALIFFPGN--FQRSKEQYDSXXXXXXMRDLVLKSCINGVELLIFSSKILQ 390
                 P + ++ +  FP     +R   ++ +       R ++ K+ ING ELLIFSSK+L 
Sbjct:   346 SGRSPTLLNVEMYLFPDEKKTERFTGEHATLFKAMVTRKVMAKANINGTELLIFSSKLLD 405

Query:   391 ANSSGF-----KLGSFLWGVYHEVQGKLEVPPVLTHEV 423
               S        K  +FLWG + + +  L + P    ++
Sbjct:   406 KTSQFLINTQKKTENFLWGFFLQTKNSLGLVPETASQI 443

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2159396 AT5G61100 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query:    39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSR-PIVWFCEECR 89
             L+ KPC++CG       + TC++C+  REH YC + ++F R P +W CEECR
Sbjct:    29 LKKKPCEVCGSDANELLMMTCFMCRDTREHTYCAR-VMFQRVPRLWICEECR 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      444       438   0.00088  118 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  299 KB (2154 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.68u 0.11s 36.79t   Elapsed:  00:00:02
  Total cpu time:  36.68u 0.11s 36.79t   Elapsed:  00:00:02
  Start:  Fri May 10 13:18:05 2013   End:  Fri May 10 13:18:07 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsI_38169 Os12g0433200 (1305 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	444
KOG1512	381	consensus PHD Zn-finger protein [General function	99.08
KOG0825	1134	consensus PHD Zn-finger protein [General function	99.03
KOG1244	336	consensus Predicted transcription factor Requiem/N	98.98
KOG4443	694	consensus Putative transcription factor HALR/MLL3,	98.97
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.66
KOG1245	1404	consensus Chromatin remodeling complex WSTF-ISWI,	98.3
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.24
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	97.8
KOG4299	613	consensus PHD Zn-finger protein [General function	97.68
KOG0957	707	consensus PHD finger protein [General function pre	96.91
KOG0955	1051	consensus PHD finger protein BR140/LIN-49 [General	96.68
KOG0954	893	consensus PHD finger protein [General function pre	96.48
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	96.46
KOG1973	274	consensus Chromatin remodeling protein, contains P	96.37
KOG4323	464	consensus Polycomb-like PHD Zn-finger protein [Gen	96.0
KOG0383	696	consensus Predicted helicase [General function pre	95.24
KOG0956	900	consensus PHD finger protein AF10 [General functio	94.38
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	94.31
KOG1246	904	consensus DNA-binding protein jumonji/RBP2/SMCY, c	93.47
COG5141	669	PHD zinc finger-containing protein [General functi	92.19
KOG1844	508	consensus PHD Zn-finger proteins [General function	87.39
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	82.51

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]

Probab=99.08  E-value=3.1e-11  Score=120.14  Aligned_cols=83  Identities=22%  Similarity=0.452  Sum_probs=68.8

Q ss_pred             hHHHhhcCcccccccce---------eccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccc
Q 013355           16 HICQQIDGRRHDFVNAV---------QFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFC   85 (444)
Q Consensus        16 ~~~~~~~~~~~~~~~~~---------~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC   85 (444)
                      +.|++|-.+.|+.+-+.         -|.|...++..|-|||....|+.+++||.||+| +||||  ++|..+|. .|+|
T Consensus       280 I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG-~HT~C--VGL~~lP~G~WIC  356 (381)
T KOG1512|consen  280 IVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRG-PHTLC--VGLQDLPRGEWIC  356 (381)
T ss_pred             eeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccccCC-CCccc--cccccccCccchh
Confidence            56899999999986543         456777899999999999999999999999999 99999  68999999 9999


Q ss_pred             c-ccccccCCccchhhH
Q 013355           86 E-ECRSIKGQVLPKSVV  101 (444)
Q Consensus        86 ~-eC~~~~~~~~p~s~~  101 (444)
                      + .|+....+...++.+
T Consensus       357 D~~C~~~~~~t~R~~s~  373 (381)
T KOG1512|consen  357 DMRCREATLNTTRQSSM  373 (381)
T ss_pred             hhHHHHhcCCCChhhhH
Confidence            8 576665554334444

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=99.03  E-value=7.2e-11  Score=128.78  Aligned_cols=56  Identities=25%  Similarity=0.638  Sum_probs=51.8

Q ss_pred             cccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccc
Q 013355           35 GHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS   90 (444)
Q Consensus        35 ~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~   90 (444)
                      .....+...|.||+..+.||+|||||.|+.+.||+|||+|.|.+||. .|||+.|..
T Consensus       209 ~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d  265 (1134)
T KOG0825|consen  209 SGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL  265 (1134)
T ss_pred             cCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence            34456788999999999999999999999999999999999999999 999999976

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]

Probab=98.98  E-value=2e-10  Score=113.73  Aligned_cols=76  Identities=25%  Similarity=0.551  Sum_probs=63.9

Q ss_pred             hhHHHhhcCccccc--------ccce-eccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccc
Q 013355           15 SHICQQIDGRRHDF--------VNAV-QFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWF   84 (444)
Q Consensus        15 ~~~~~~~~~~~~~~--------~~~~-~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~Wf   84 (444)
                      +.-|..|+.--|+-        +++| -|-|-.+++..|-|||...+.|.||+||.||+| ||+||+.|.+.+-|+ .|.
T Consensus       246 lvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfcddcdrg-yhmyclsppm~eppegsws  324 (336)
T KOG1244|consen  246 LVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRG-YHMYCLSPPMVEPPEGSWS  324 (336)
T ss_pred             hcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeecccCCc-eeeEecCCCcCCCCCCchh
Confidence            45577777777765        2232 455667899999999999999999999999999 999999999999999 999


Q ss_pred             ccccccc
Q 013355           85 CEECRSI   91 (444)
Q Consensus        85 C~eC~~~   91 (444)
                      |.-|...
T Consensus       325 c~KOG~~  331 (336)
T KOG1244|consen  325 CHLCLEE  331 (336)
T ss_pred             HHHHHHH
Confidence            9999653

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]

Probab=98.97  E-value=1.8e-10  Score=123.90  Aligned_cols=75  Identities=23%  Similarity=0.539  Sum_probs=63.0

Q ss_pred             hhHHHhhcCcccccccc-----eecccc--ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccc
Q 013355           15 SHICQQIDGRRHDFVNA-----VQFGHF--MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCE   86 (444)
Q Consensus        15 ~~~~~~~~~~~~~~~~~-----~~~~~~--~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~   86 (444)
                      ..+|..|++.+|..+-+     +++++.  ..++++|+.||..|++.++++|++||.. ||+||+.|.++.||. .|+|.
T Consensus        35 m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvs-yh~yc~~P~~~~v~sg~~~ck  113 (694)
T KOG4443|consen   35 LLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVS-YHCYCQKPPNDKVPSGPWLCK  113 (694)
T ss_pred             chhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCccccccccccccc-ccccccCCccccccCcccccH
Confidence            45677777777766433     555555  6899999999999999999999999965 999999999999999 99999


Q ss_pred             cccc
Q 013355           87 ECRS   90 (444)
Q Consensus        87 eC~~   90 (444)
                      +|..
T Consensus       114 k~~~  117 (694)
T KOG4443|consen  114 KCTR  117 (694)
T ss_pred             HHHh
Confidence            8844

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.66  E-value=7.7e-09  Score=76.68  Aligned_cols=48  Identities=25%  Similarity=0.599  Sum_probs=42.6

Q ss_pred             cccccCCCCCCcceeecCCCCCCceeeccCCccCC--CCCC-cccccccccc
Q 013355           43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLF--SRPI-VWFCEECRSI   91 (444)
Q Consensus        43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~--~VP~-~WfC~eC~~~   91 (444)
                      +|.+||..++++.|+.||.|++. +|.+|+++...  .++. .|+|+.|+.+
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~-~H~~C~~~~~~~~~~~~~~w~C~~C~~~   51 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRW-YHQECVGPPEKAEEIPSGDWYCPNCRPK   51 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCE-EETTTSTSSHSHHSHHSSSBSSHHHHHC
T ss_pred             eCcCCCCcCCCCCeEEcCCCChh-hCcccCCCChhhccCCCCcEECcCCcCc
Confidence            58999999999999999999977 99999998877  5555 8999999753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]

Probab=98.30  E-value=6.7e-08  Score=112.72  Aligned_cols=65  Identities=25%  Similarity=0.592  Sum_probs=58.9

Q ss_pred             ccccceeccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355           27 DFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        27 ~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~   93 (444)
                      +|...|+|.+... ...|.+|...+..+.|++||.|+.+ +|+||++|.+.+||. +|+|++|+...+
T Consensus      1095 ~l~~~i~w~~s~~-~~~c~~cr~k~~~~~m~lc~~c~~~-~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1095 DLEAEIKWDRSAV-NALCKVCRRKKQDEKMLLCDECLSG-FHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred             HHHHHHhhccccc-hhhhhhhhhcccchhhhhhHhhhhh-HHHHhhhhhhccCCcCCccCCccchhhh
Confidence            4556677887776 7899999999999999999999988 999999999999999 999999999875

>smart00249 PHD PHD zinc finger

Probab=98.24  E-value=8.8e-07  Score=62.41  Aligned_cols=45  Identities=27%  Similarity=0.708  Sum_probs=39.5

Q ss_pred             cccccCCCCCCcceeecCCCCCCceeeccCCccCC-CCCC-ccccccc
Q 013355           43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLF-SRPI-VWFCEEC   88 (444)
Q Consensus        43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~-~VP~-~WfC~eC   88 (444)
                      .|.+|+..++.+.|+.|+.|+.. +|..|+.+... ..+. .|+|+.|
T Consensus         1 ~C~~C~~~~~~~~~i~C~~C~~~-~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGELLQCDGCDRW-YHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCCEEECCCCCch-hhhhhCCCcccCCCCCCCEECcCC
Confidence            48899999999999999999976 99999987766 5566 9999987

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=97.80  E-value=7.2e-06  Score=75.47  Aligned_cols=28  Identities=29%  Similarity=0.587  Sum_probs=25.8

Q ss_pred             eeeccCCccCCCCCC-cccccccccccCC
Q 013355           67 EHIYCMKFLLFSRPI-VWFCEECRSIKGQ   94 (444)
Q Consensus        67 ~HtYCl~p~L~~VP~-~WfC~eC~~~~~~   94 (444)
                      +|+||++|+|..||+ +|+|+.|..+...
T Consensus         2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~   30 (148)
T cd04718           2 FHLCCLRPPLKEVPEGDWICPFCEVEKSG   30 (148)
T ss_pred             cccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence            899999999999999 9999999987644

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.68  E-value=1.2e-05  Score=86.99  Aligned_cols=51  Identities=27%  Similarity=0.597  Sum_probs=46.2

Q ss_pred             cccccccCCCCCCcceeecCCCCCCceeeccCCcc--CCCCCC-ccccccccccc
Q 013355           41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFL--LFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~--L~~VP~-~WfC~eC~~~~   92 (444)
                      ..+|..|+..|.-..+++||+|.++ +|.+|+.|+  ...+|. .|||.+|..+-
T Consensus       253 ~~fCsaCn~~~~F~~~i~CD~Cp~s-FH~~CLePPl~~eniP~g~W~C~ec~~k~  306 (613)
T KOG4299|consen  253 EDFCSACNGSGLFNDIICCDGCPRS-FHQTCLEPPLEPENIPPGSWFCPECKIKS  306 (613)
T ss_pred             HHHHHHhCCccccccceeecCCchH-HHHhhcCCCCCcccCCCCccccCCCeeee
Confidence            3499999999999999999999987 999999999  559999 99999997753

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=96.91  E-value=0.00034  Score=74.93  Aligned_cols=49  Identities=27%  Similarity=0.582  Sum_probs=45.2

Q ss_pred             cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-----ccccccccc
Q 013355           41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-----VWFCEECRS   90 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-----~WfC~eC~~   90 (444)
                      ...|.||....+..+|++||-|..- ||.-|+.|+|...|.     .|.|.||..
T Consensus       544 ~ysCgiCkks~dQHll~~CDtC~lh-YHlGCL~PPLTR~Pkk~kn~gWqCsECdk  597 (707)
T KOG0957|consen  544 NYSCGICKKSTDQHLLTQCDTCHLH-YHLGCLSPPLTRLPKKNKNFGWQCSECDK  597 (707)
T ss_pred             ceeeeeeccchhhHHHhhcchhhce-eeccccCCccccCcccccCcceeeccccc
Confidence            4689999999999999999999976 999999999999998     599999933

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]

Probab=96.68  E-value=0.0011  Score=76.47  Aligned_cols=54  Identities=28%  Similarity=0.539  Sum_probs=45.8

Q ss_pred             ccccccccccccCCCCCC--cceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355           36 HFMLQVKPCDICGDGGWP--EQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        36 ~~~~d~~vC~vCG~~g~e--d~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~   92 (444)
                      ...++..+|.||-++.-.  +.++.||+|+.. .|.+|..  ..-+|+ .|+|-.|-...
T Consensus       214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~-VHq~Cyg--i~~ipeg~WlCr~Cl~s~  270 (1051)
T KOG0955|consen  214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLA-VHQECYG--IPFIPEGQWLCRRCLQSP  270 (1051)
T ss_pred             cccCCCccceeecccccCCCceEEEcCCCcch-hhhhccC--CCCCCCCcEeehhhccCc
Confidence            444678999999988877  999999999976 9999975  457999 99999996543

>KOG0954 consensus PHD finger protein [General function prediction only]

Probab=96.48  E-value=0.00092  Score=74.25  Aligned_cols=49  Identities=22%  Similarity=0.626  Sum_probs=42.6

Q ss_pred             cccccccccCCCCC--CcceeecCCCCCCceeeccCCccCCCCCC-ccccccccc
Q 013355           39 LQVKPCDICGDGGW--PEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS   90 (444)
Q Consensus        39 ~d~~vC~vCG~~g~--ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~   90 (444)
                      .+...|++|..++-  .+.|++||+|+.- -|.-|  .++.+||+ .|.|-+|.-
T Consensus       269 dedviCDvCrspD~e~~neMVfCd~Cn~c-VHqaC--yGIle~p~gpWlCr~Cal  320 (893)
T KOG0954|consen  269 DEDVICDVCRSPDSEEANEMVFCDKCNIC-VHQAC--YGILEVPEGPWLCRTCAL  320 (893)
T ss_pred             cccceeceecCCCccccceeEEeccchhH-HHHhh--hceeecCCCCeeehhccc
Confidence            47899999988754  4679999999976 99999  57889999 999999965

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=96.46  E-value=0.00081  Score=48.34  Aligned_cols=33  Identities=27%  Similarity=0.735  Sum_probs=18.7

Q ss_pred             cceeecCCCCCCceeeccCCccCCCCCC--cccccccc
Q 013355           54 EQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECR   89 (444)
Q Consensus        54 d~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~   89 (444)
                      +.|+.|++|+.. -|..|  .+...+|+  +|+|+.|+
T Consensus         2 n~ll~C~~C~v~-VH~~C--YGv~~~~~~~~W~C~~C~   36 (36)
T PF13831_consen    2 NPLLFCDNCNVA-VHQSC--YGVSEVPDGDDWLCDRCE   36 (36)
T ss_dssp             CEEEE-SSS--E-EEHHH--HT-SS--SS-----HHH-
T ss_pred             CceEEeCCCCCc-CChhh--CCcccCCCCCcEECCcCC
Confidence            569999999976 99999  46667777  79999985

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]

Probab=96.37  E-value=0.0022  Score=63.69  Aligned_cols=57  Identities=21%  Similarity=0.431  Sum_probs=45.5

Q ss_pred             eccccccccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355           33 QFGHFMLQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        33 ~~~~~~~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~   93 (444)
                      .+.....+...| +|. -..-..|.-||.  |...=+|.-|  ++|..-|. .|||++|.....
T Consensus       211 ~~~~d~~e~~yC-~Cn-qvsyg~Mi~CDn~~C~~eWFH~~C--VGL~~~PkgkWyC~~C~~~~~  270 (274)
T KOG1973|consen  211 EEAVDPDEPTYC-ICN-QVSYGKMIGCDNPGCPIEWFHFTC--VGLKTKPKGKWYCPRCKAENK  270 (274)
T ss_pred             ccccCCCCCEEE-Eec-ccccccccccCCCCCCcceEEEec--cccccCCCCcccchhhhhhhh
Confidence            444455677888 888 556677999999  9944499999  78999999 999999987654

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]

Probab=96.00  E-value=0.0028  Score=67.57  Aligned_cols=51  Identities=25%  Similarity=0.638  Sum_probs=38.6

Q ss_pred             ccccccC--CCCCCcceeecCCCCCCceeeccCCccCC----CCCC-cccccccccccC
Q 013355           42 KPCDICG--DGGWPEQIATCYLCKSAREHIYCMKFLLF----SRPI-VWFCEECRSIKG   93 (444)
Q Consensus        42 ~vC~vCG--~~g~ed~LllCD~Cd~ga~HtYCl~p~L~----~VP~-~WfC~eC~~~~~   93 (444)
                      ..|.+|+  ..+.-+.|+.|++|+.. ||+-|+.+...    .=|. .|||..|.....
T Consensus       169 ~qc~vC~~g~~~~~NrmlqC~~C~~~-fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~  226 (464)
T KOG4323|consen  169 LQCSVCYCGGPGAGNRMLQCDKCRQW-YHQACHQPLIKDELAGDPFYEWFCDVCNRGPK  226 (464)
T ss_pred             ceeeeeecCCcCccceeeeecccccH-HHHHhccCCCCHhhccCccceEeehhhccchh
Confidence            3366665  55566799999999966 99999987655    2255 999999987653

>KOG0383 consensus Predicted helicase [General function prediction only]

Probab=95.24  E-value=0.0058  Score=68.06  Aligned_cols=50  Identities=28%  Similarity=0.652  Sum_probs=42.5

Q ss_pred             ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      +-+...|.||+++|   .++.||.|-.. +|.||+++.+..+|. +|.|+.|...
T Consensus        44 ~~~~e~c~ic~~~g---~~l~c~tC~~s-~h~~cl~~pl~~~p~~~~~c~Rc~~p   94 (696)
T KOG0383|consen   44 DAEQEACRICADGG---ELLWCDTCPAS-FHASCLGPPLTPQPNGEFICPRCFCP   94 (696)
T ss_pred             hhhhhhhhhhcCCC---cEEEeccccHH-HHHHccCCCCCcCCccceeeeeeccC
Confidence            34568899999887   46679999955 999999999999999 9999999443

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=94.38  E-value=0.015  Score=64.76  Aligned_cols=49  Identities=35%  Similarity=0.906  Sum_probs=39.7

Q ss_pred             cccccccCC-CCC-CcceeecCC--CCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355           41 VKPCDICGD-GGW-PEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        41 ~~vC~vCG~-~g~-ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~   92 (444)
                      +-=|.||-| .|| |.=|++||+  |.++ -|.-|  ++...||. .|||-.|....
T Consensus         5 VGGCCVCSDErGWaeNPLVYCDG~nCsVA-VHQaC--YGIvqVPtGpWfCrKCesqe   58 (900)
T KOG0956|consen    5 VGGCCVCSDERGWAENPLVYCDGHNCSVA-VHQAC--YGIVQVPTGPWFCRKCESQE   58 (900)
T ss_pred             ccceeeecCcCCCccCceeeecCCCceee-eehhc--ceeEecCCCchhhhhhhhhh
Confidence            455889976 344 677999996  9976 99999  57789999 99999997643

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=94.31  E-value=0.031  Score=56.01  Aligned_cols=48  Identities=27%  Similarity=0.710  Sum_probs=40.1

Q ss_pred             ccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           40 QVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        40 d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      +...| -|..+.+.+ |+-||+  |.+--+|.-|  ++|.+-|+ .|+|++|...
T Consensus       220 e~lYC-fCqqvSyGq-MVaCDn~nCkrEWFH~~C--VGLk~pPKG~WYC~eCk~~  270 (271)
T COG5034         220 EELYC-FCQQVSYGQ-MVACDNANCKREWFHLEC--VGLKEPPKGKWYCPECKKA  270 (271)
T ss_pred             ceeEE-Eeccccccc-ceecCCCCCchhheeccc--cccCCCCCCcEeCHHhHhc
Confidence            44556 899888754 888985  8888899999  68999999 9999999753

>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]

Probab=93.47  E-value=0.051  Score=61.97  Aligned_cols=52  Identities=25%  Similarity=0.673  Sum_probs=46.7

Q ss_pred             ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      -.+...|..|+.+..+..+ +|++|++. +|+||.++.+..+|+ +|.|+.|...
T Consensus       152 ~~~~~~~~~~~k~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (904)
T KOG1246|consen  152 FIDYPQCNTCSKGKEEKLL-LCDSCDDS-YHTYCLRPPLTRVPDGDWRCPKCIPT  204 (904)
T ss_pred             cccchhhhccccCCCccce-ecccccCc-ccccccCCCCCcCCcCcccCCccccc
Confidence            3567789999999999555 99999987 999999999999999 9999999876

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=92.19  E-value=0.06  Score=58.29  Aligned_cols=47  Identities=23%  Similarity=0.541  Sum_probs=39.8

Q ss_pred             cccccccCCCCCC--cceeecCCCCCCceeeccCCccCCCCCC-ccccccccc
Q 013355           41 VKPCDICGDGGWP--EQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS   90 (444)
Q Consensus        41 ~~vC~vCG~~g~e--d~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~   90 (444)
                      +..|.+|-..+.+  +.+++||+|+.. -|.-|  .+..-||+ -|+|-.|.-
T Consensus       193 d~~C~~c~~t~~eN~naiVfCdgC~i~-VHq~C--YGI~f~peG~WlCrkCi~  242 (669)
T COG5141         193 DDICTKCTSTHNENSNAIVFCDGCEIC-VHQSC--YGIQFLPEGFWLCRKCIY  242 (669)
T ss_pred             hhhhHhccccccCCcceEEEecCcchh-hhhhc--ccceecCcchhhhhhhcc
Confidence            5789999887764  679999999965 99999  56779999 999999854

>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]

Probab=87.39  E-value=0.39  Score=50.66  Aligned_cols=52  Identities=21%  Similarity=0.468  Sum_probs=45.7

Q ss_pred             cccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355           39 LQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK   92 (444)
Q Consensus        39 ~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~   92 (444)
                      .+.+.| +||..++ +.++.-|+.|.+. .|.+|+...-..-|+...|..|....
T Consensus        84 ~~~~~c-~c~~~~~~~g~~i~c~~c~~W-qh~~C~g~~~~~~p~~y~c~~c~~~~  136 (508)
T KOG1844|consen   84 REISRC-DCGLEDDMEGLMIQCDWCGRW-QHKICCGSFKSTKPDKYVCEICTPRN  136 (508)
T ss_pred             Cccccc-ccccccCCCceeeCCcccCcc-cCceeeeecCCCCchhceeeeecccc
Confidence            567888 9999999 9999999999988 99999987666668888899998864

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=82.51  E-value=0.78  Score=51.02  Aligned_cols=93  Identities=18%  Similarity=0.268  Sum_probs=64.7

Q ss_pred             CcccccccccccchhhH-HHhhcCcccc-cccc---eeccccc----cc-cccccccCCCCCCcceeecCCCCCCceeec
Q 013355            1 MCCIACYELTCTFNSHI-CQQIDGRRHD-FVNA---VQFGHFM----LQ-VKPCDICGDGGWPEQIATCYLCKSAREHIY   70 (444)
Q Consensus         1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~---~~~~~~~----~d-~~vC~vCG~~g~ed~LllCD~Cd~ga~HtY   70 (444)
                      +-|..|..-+=-..++- |..|+|+--. -.+-   .++++..    .+ ..+|..|...|--..+..|+.|.-.-.-.-
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~   82 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT   82 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence            45889988765555544 8888876432 1221   2222222    22 579999999999999999999996667777


Q ss_pred             cCCccCCCCCC-cccccccccccC
Q 013355           71 CMKFLLFSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        71 Cl~p~L~~VP~-~WfC~eC~~~~~   93 (444)
                      |..-+-.-+|. +.+|++|+.+..
T Consensus        83 c~~cG~~~~~~~~~lc~~c~~~~~  106 (715)
T COG1107          83 CDICGDIIVPWEEGLCPECRRKPK  106 (715)
T ss_pred             eccccceecCcccccChhHhhCCc
Confidence            87656556666 668999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	444
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	2e-04
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 42 KPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQVLPKS 99
            C +C  G   +++  C  C     HI+C+   L   P  +W C +C   + +  P++
Sbjct: 17 YICQVCSRGDEDDKLLFCDGCDDNY-HIFCLLPPLPEIPRGIWRCPKCILAECKQPPEA 74

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 44 CDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIV-WFCEECR 89
          C +C   G  +++  C  C  A  H++C++  L+  P   W C  C+
Sbjct: 3  CKVCRKKGEDDKLILCDECNKAF-HLFCLRPALYEVPDGEWQCPACQ 48

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 71/469 (15%), Positives = 135/469 (28%), Gaps = 152/469 (32%)

Query: 5   AC--YELTCTFNSHI-------CQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQ 55
            C  Y++ C  +  I       C   +      +  +Q    + Q+ P +          
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPE----TVLEMLQ--KLLYQIDP-NWTSRSDHSSN 222

Query: 56  IATCYLCKSAREHIYCMKFLLFSRP------I---VW-------FCEECRSIKGQVL--- 96
           I       S +  +   + LL S+P      +   V        F   C+     +L   
Sbjct: 223 IK--LRIHSIQAEL---RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-----ILLTT 272

Query: 97  -PKSVVQELCHGALTSTDISSRD-------------LRQSVGGPNVKLPTQSNLHSNHAC 142
             K V   L   A T+T IS                L + +      LP +    +    
Sbjct: 273 RFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 143 ------QRDTLTT----KSNGTPRF----ETSLSKLSPQEVNADPSVSHCNPLLGGI--E 186
                  RD L T    K     +     E+SL+ L P E             L  +   
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE------YRKMFDRL-SVFPP 383

Query: 187 EIHSITQQQVLQTSKELKGKNWI-VCKEEPVEILEAMGSRVEVAADITPPPSVNALPIIS 245
             H I    +L     +    W  V K + + ++  +     V     P  S  ++P   
Sbjct: 384 SAH-IP-TILLSL---I----WFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIP--- 429

Query: 246 SAQSFDIQTSNLDPNDEPDNSF-----LLTSYAI---WCGSIEMLSLDTSSKFYDGFWA- 296
                 I    L+   + +N +     ++  Y I   +         D    + D ++  
Sbjct: 430 -----SIY---LELKVKLENEYALHRSIVDHYNIPKTFDSD------DLIPPYLDQYFYS 475

Query: 297 YLP-----CKIHRKVLEFSKE------MPGVISCSSVPCCNISLEVFQNDMPNIDDIA-L 344
           ++       +   ++  F         +   I   S                 ++ +  L
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG--------SILNTLQQL 527

Query: 345 IFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSK---ILQ 390
            F+      +  +Y+ L+  +   D + K     +E  +  SK   +L+
Sbjct: 528 KFYKPYICDNDPKYERLVNAIL--DFLPK-----IEENLICSKYTDLLR 569

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	444
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	99.34
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.34
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	99.3
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.29
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.25
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	99.24
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	99.24
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	99.22
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	99.16
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	99.14
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.13
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.13
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.12
2yt5_A	66	Metal-response element-binding transcription facto	99.11
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.1
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.08
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	99.08
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.08
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.08
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.04
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	98.99
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	98.96
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	98.95
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.95
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	98.9
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.55
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	98.5
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	98.42
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	98.37
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	98.33
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	98.3
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	98.29
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.27
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.23
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	98.15
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	98.07
1wee_A	72	PHD finger family protein; structural genomics, PH	98.0
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	97.99
1we9_A	64	PHD finger family protein; structural genomics, PH	97.99
1wew_A	78	DNA-binding family protein; structural genomics, P	97.81
1wem_A	76	Death associated transcription factor 1; structura	97.79
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	97.78
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	97.77
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	97.73
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	97.72
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	97.57
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	97.5
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	97.49
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.45
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	97.31
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	97.19
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	97.15
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	97.0
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	96.47
3kv5_D	488	JMJC domain-containing histone demethylation prote	96.44
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	95.58
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	94.89
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	90.44
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	88.67
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	88.18
1weq_A	85	PHD finger protein 7; structural genomics, PHD dom	87.34
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	86.3
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	85.89
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	85.67
1dx8_A	70	Rubredoxin; electron transport, zinc-substitution;	81.0

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.34  E-value=2.9e-13  Score=100.28  Aligned_cols=48  Identities=27%  Similarity=0.817  Sum_probs=45.1

Q ss_pred             cccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      .|.+||++++++.|++||+|+++ +|++|++|.|.++|+ +|||+.|...
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~-~H~~Cl~p~l~~~P~g~W~C~~C~~~   50 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKA-FHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCE-ECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCCCCCCCCCCCCEEECCCCChh-hCcccCCCCcCCCCCCcEECcCcccc
Confidence            69999999999999999999976 999999999999999 9999999763

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.34  E-value=3.5e-13  Score=113.82  Aligned_cols=90  Identities=21%  Similarity=0.522  Sum_probs=74.3

Q ss_pred             cccccccccccchhhHHHhhcCcccccccceec------cccccccccccccCCCCCCcceeecCCCCCCceeeccCCcc
Q 013355            2 CCIACYELTCTFNSHICQQIDGRRHDFVNAVQF------GHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFL   75 (444)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~   75 (444)
                      .|..|+..+=.-+.+.|..|+..+|...-....      .+.-.+..+|.+||..++++.||+||.|+++ ||+||++|.
T Consensus         9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~-yH~~Cl~pp   87 (111)
T 2ysm_A            9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKG-YHTFCLQPV   87 (111)
T ss_dssp             CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCE-EEGGGSSSC
T ss_pred             CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcH-HhHHhcCCc
Confidence            477888776434557899999999998554433      3444667799999999999999999999976 999999999


Q ss_pred             CCCCCC-ccccccccccc
Q 013355           76 LFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        76 L~~VP~-~WfC~eC~~~~   92 (444)
                      |.++|+ +|||+.|....
T Consensus        88 l~~~P~g~W~C~~C~~c~  105 (111)
T 2ysm_A           88 MKSVPTNGWKCKNCRICI  105 (111)
T ss_dssp             CSSCCSSCCCCHHHHCCS
T ss_pred             cccCCCCCcCCcCCcCcC
Confidence            999999 99999997754

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=99.30  E-value=8.6e-13  Score=112.38  Aligned_cols=77  Identities=22%  Similarity=0.484  Sum_probs=64.2

Q ss_pred             hhhHHHhhcCcccccccce---------eccccccccccccccCCCC-CCcceeecCCCCCCceeeccCCccCCCCCC-c
Q 013355           14 NSHICQQIDGRRHDFVNAV---------QFGHFMLQVKPCDICGDGG-WPEQIATCYLCKSAREHIYCMKFLLFSRPI-V   82 (444)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~vC~vCG~~g-~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~   82 (444)
                      ..+.|..|+..+|.++-..         ...+...+..+|.+||+.+ +++.||+||.|+++ ||+||++|.|.++|+ +
T Consensus        25 ~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~-yH~~Cl~p~l~~~P~~~  103 (112)
T 3v43_A           25 ELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRG-FHMECCDPPLTRMPKGM  103 (112)
T ss_dssp             CCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCE-ECGGGCSSCCSSCCSSC
T ss_pred             hceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCCe-eecccCCCCCCCCCCCC
Confidence            5667888888888885421         4456667888999999864 66899999999976 999999999999999 9


Q ss_pred             ccccccccc
Q 013355           83 WFCEECRSI   91 (444)
Q Consensus        83 WfC~eC~~~   91 (444)
                      |||+.|+.+
T Consensus       104 W~C~~C~~k  112 (112)
T 3v43_A          104 WICQICRPR  112 (112)
T ss_dssp             CCCTTTSCC
T ss_pred             eECCCCCCc
Confidence            999999864

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=9.3e-13  Score=109.54  Aligned_cols=55  Identities=24%  Similarity=0.602  Sum_probs=50.1

Q ss_pred             ccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           36 HFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        36 ~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      +..++...|.||+.+++++.||+||+|+++ +|+||+.|.|.+||. +|||+.|...
T Consensus        11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~-~H~~Cl~Ppl~~~P~g~W~C~~C~~~   66 (92)
T 2e6r_A           11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDN-YHIFCLLPPLPEIPRGIWRCPKCILA   66 (92)
T ss_dssp             CCCCCCCCCSSSCCSGGGGGCEECTTTCCE-ECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred             hhccCCCCCccCCCcCCCCCEEEcCCCCch-hccccCCCCcccCCCCCcCCccCcCc
Confidence            344667899999999999999999999976 999999999999999 9999999764

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.25  E-value=2.2e-12  Score=101.73  Aligned_cols=51  Identities=29%  Similarity=0.512  Sum_probs=44.1

Q ss_pred             cccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           37 FMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        37 ~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      .......|.+||+++   .||+||.|+++ ||+||++|.|.+||+ +|||+.|+..
T Consensus         8 ~~~~~~~C~vC~~~~---~ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C            8 NLAPGARCGVCGDGT---DVLRCTHCAAA-FHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             CCCTTCCCTTTSCCT---TCEECSSSCCE-ECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCCCCcCCCCCCC---eEEECCCCCCc-eecccCCCccCcCCCCCEECccccCC
Confidence            334557799999875   49999999976 999999999999999 9999999764

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=99.24  E-value=3e-12  Score=103.92  Aligned_cols=54  Identities=35%  Similarity=0.798  Sum_probs=48.3

Q ss_pred             cccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-c-cccccccc
Q 013355           35 GHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-V-WFCEECRS   90 (444)
Q Consensus        35 ~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~-WfC~eC~~   90 (444)
                      .+...+. .|++||..++++.||+||+|+++ ||+||+.|.|.+||+ + |||+.|+.
T Consensus        21 ~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~-yH~~Cl~PpL~~~P~g~~W~C~~C~~   76 (77)
T 3shb_A           21 NRLCRVC-ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRN   76 (77)
T ss_dssp             TSCCTTT-SBTTTCCCSCGGGEEECTTTCCE-EETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred             CCCCCCC-cCCccCCCCCCcceeEeCCCCCc-cCcccCCCcccCCCCCCceECcCccc
Confidence            3455667 89999999999999999999976 999999999999999 7 99999975

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=99.24  E-value=1.9e-12  Score=110.65  Aligned_cols=77  Identities=21%  Similarity=0.504  Sum_probs=64.1

Q ss_pred             hhhHHHhhcCcccccccce---------eccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cc
Q 013355           14 NSHICQQIDGRRHDFVNAV---------QFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VW   83 (444)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~W   83 (444)
                      ..+.|..|+..+|..+-..         ...+...+...|.+||..++++.||+||+|+++ ||+||++|.|.++|+ +|
T Consensus        22 ~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~-yH~~Cl~ppl~~~P~g~W  100 (114)
T 2kwj_A           22 ELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRG-YHMYCLNPPVAEPPEGSW  100 (114)
T ss_dssp             CCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCE-EETTTSSSCCSSCCSSCC
T ss_pred             CCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCcc-ccccccCCCccCCCCCCe
Confidence            4567788888888875433         234555677899999999999999999999976 999999999999999 99


Q ss_pred             cccccccc
Q 013355           84 FCEECRSI   91 (444)
Q Consensus        84 fC~eC~~~   91 (444)
                      ||+.|...
T Consensus       101 ~C~~C~~~  108 (114)
T 2kwj_A          101 SCHLCWEL  108 (114)
T ss_dssp             CCHHHHHH
T ss_pred             ECccccch
Confidence            99999764

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4.8e-12  Score=102.55  Aligned_cols=54  Identities=30%  Similarity=0.706  Sum_probs=48.1

Q ss_pred             cccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC--ccccccccc
Q 013355           35 GHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRS   90 (444)
Q Consensus        35 ~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~   90 (444)
                      .+...+. .|.+||..++++.||+||+|+++ ||+||+.|.|..||+  +|||+.|..
T Consensus        21 ~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~P~g~~W~C~~C~~   76 (77)
T 2e6s_A           21 EKKCHSC-SCRVCGGKHEPNMQLLCDECNVA-YHIYCLNPPLDKVPEEEYWYCPSCKT   76 (77)
T ss_dssp             SSCCSSS-SCSSSCCCCCSTTEEECSSSCCE-EETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred             CeECCCC-CCcCcCCcCCCCCEEEcCCCCcc-ccccccCCCccCCCCCCCcCCcCccC
Confidence            3444555 99999999999999999999976 999999999999998  799999975

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=99.16  E-value=2.2e-11  Score=96.79  Aligned_cols=56  Identities=34%  Similarity=0.754  Sum_probs=50.0

Q ss_pred             ccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC--cccccccccc
Q 013355           34 FGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSI   91 (444)
Q Consensus        34 ~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~   91 (444)
                      ..+...+. .|.+||..++++.||+||+|+++ ||+||++|.|.+||+  +|||+.|..+
T Consensus        12 ~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~P~g~~W~C~~C~~~   69 (70)
T 3asl_A           12 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRND   69 (70)
T ss_dssp             TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCE-EEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred             CCeECCCC-CCcCCCCcCCCCCEEEcCCCCCc-eecccCCCCcCCCCCCCCcCCcCccCc
Confidence            45555666 89999999999999999999976 999999999999998  9999999864

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.14  E-value=1e-11  Score=102.39  Aligned_cols=53  Identities=25%  Similarity=0.533  Sum_probs=46.6

Q ss_pred             cccccccccCCCCC--CcceeecCCCCCCceeeccCCccCCC----CCC-ccccccccccc
Q 013355           39 LQVKPCDICGDGGW--PEQIATCYLCKSAREHIYCMKFLLFS----RPI-VWFCEECRSIK   92 (444)
Q Consensus        39 ~d~~vC~vCG~~g~--ed~LllCD~Cd~ga~HtYCl~p~L~~----VP~-~WfC~eC~~~~   92 (444)
                      +...+|.+|+.++.  ++.||+||+|+++ ||+||+.|.|.+    ||+ +|||..|....
T Consensus        14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~   73 (88)
T 1wev_A           14 EMGLACVVCRQMTVASGNQLVECQECHNL-YHQDCHKPQVTDKEVNDPRLVWYCARCTRQM   73 (88)
T ss_dssp             HHCCSCSSSCCCCCCTTCCEEECSSSCCE-EETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred             CCCCcCCCCCCCCCCCCCceEECCCCCCe-EcCccCCCcccccccCCCCCCeeCccccchh
Confidence            34679999999877  4799999999977 999999999985    999 99999998754

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.13  E-value=3e-11  Score=93.38  Aligned_cols=49  Identities=33%  Similarity=0.804  Sum_probs=43.6

Q ss_pred             ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355           40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~   92 (444)
                      ....|.+|++++   .|++||+|+++ ||+||+.|.|.++|+ +|||+.|..+.
T Consensus         8 ~~~~C~vC~~~g---~ll~Cd~C~~~-fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            8 HMEFCRVCKDGG---ELLCCDTCPSS-YHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SCSSCTTTCCCS---SCBCCSSSCCC-BCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCcCCCCCCCC---CEEEcCCCCHH-HcccccCCCcCcCCCCccCChhhcCch
Confidence            457799999865   69999999976 999999999999999 99999998754

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.13  E-value=1.1e-11  Score=99.07  Aligned_cols=53  Identities=28%  Similarity=0.607  Sum_probs=45.8

Q ss_pred             ccccccccccCCCC--CCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355           38 MLQVKPCDICGDGG--WPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        38 ~~d~~vC~vCG~~g--~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~   93 (444)
                      ..+...|.+|++++  +++.|++||+|+++ +|+||+.+.  .||+ +|||+.|..+..
T Consensus        13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~-~H~~Cl~~~--~vP~g~W~C~~C~~~~~   68 (71)
T 2ku3_A           13 IDEDAVCSICMDGESQNSNVILFCDMCNLA-VHQECYGVP--YIPEGQWLCRHCLQSRA   68 (71)
T ss_dssp             CCSSCSCSSSCCCCCCSSSCEEECSSSCCE-EEHHHHTCS--SCCSSCCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCc-cccccCCCC--cCCCCCcCCccCcCcCc
Confidence            34578999999987  88999999999976 999999866  5999 999999987643

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.12  E-value=2.1e-11  Score=95.29  Aligned_cols=51  Identities=31%  Similarity=0.710  Sum_probs=45.4

Q ss_pred             ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355           40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ   94 (444)
Q Consensus        40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~   94 (444)
                      ....|.+|+++|   .|++||+|+++ ||++|+.|.|..+|. +|||+.|.....+
T Consensus         7 ~~~~C~vC~~~g---~ll~CD~C~~~-fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~   58 (66)
T 1xwh_A            7 NEDECAVCRDGG---ELICCDGCPRA-FHLACLSPPLREIPSGTWRCSSCLQATVQ   58 (66)
T ss_dssp             CCCSBSSSSCCS---SCEECSSCCCE-ECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred             CCCCCccCCCCC---CEEEcCCCChh-hcccccCCCcCcCCCCCeECccccCcccc
Confidence            467899999875   59999999975 999999999999999 9999999876654

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.11  E-value=2.1e-11  Score=94.32  Aligned_cols=54  Identities=22%  Similarity=0.488  Sum_probs=46.0

Q ss_pred             cccccccccCCC--CCCcceeecCCCCCCceeeccCCccCCC--C-CC-cccccccccccC
Q 013355           39 LQVKPCDICGDG--GWPEQIATCYLCKSAREHIYCMKFLLFS--R-PI-VWFCEECRSIKG   93 (444)
Q Consensus        39 ~d~~vC~vCG~~--g~ed~LllCD~Cd~ga~HtYCl~p~L~~--V-P~-~WfC~eC~~~~~   93 (444)
                      .+..+|.+||.+  .+++.|++||+|+++ ||+||+.|.+.+  + |+ +|||+.|.....
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~-~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~   63 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQG-YHQLCHTPHIDSSVIDSDEKWLCRQCVFATT   63 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCE-EETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChH-HHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence            346789999988  456999999999976 999999998887  4 88 999999987543

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.10  E-value=5e-11  Score=99.30  Aligned_cols=51  Identities=24%  Similarity=0.544  Sum_probs=45.2

Q ss_pred             ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355           38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~   92 (444)
                      ......|.+||++|   .||+||.|+++ ||+||+.|.|.++|+ +|+|+.|....
T Consensus        22 d~n~~~C~vC~~~g---~LL~CD~C~~~-fH~~Cl~PpL~~~P~g~W~C~~C~~~~   73 (88)
T 1fp0_A           22 DDSATICRVCQKPG---DLVMCNQCEFC-FHLDCHLPALQDVPGEEWSCSLCHVLP   73 (88)
T ss_dssp             SSSSSCCSSSCSSS---CCEECTTSSCE-ECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCcCcCcCCCC---CEEECCCCCCc-eecccCCCCCCCCcCCCcCCccccCCC
Confidence            34567999999987   49999999976 999999999999999 99999998653

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=5e-11  Score=90.35  Aligned_cols=48  Identities=27%  Similarity=0.738  Sum_probs=42.8

Q ss_pred             cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS   90 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~   90 (444)
                      .....|.+|++++   .|++||.|+++ ||++|+.|.|..+|. +|||+.|..
T Consensus         7 ~~~~~C~vC~~~g---~ll~Cd~C~~~-~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKSG---QLLMCDTCSRV-YHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCSS---CCEECSSSSCE-ECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCccCCCCC---eEEEcCCCCcc-eECccCCCCcCCCCCCceEChhhhC
Confidence            3467899999874   79999999966 999999999999999 999999975

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=99.08  E-value=7.7e-11  Score=98.80  Aligned_cols=59  Identities=27%  Similarity=0.489  Sum_probs=51.0

Q ss_pred             eccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccccC
Q 013355           33 QFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKG   93 (444)
Q Consensus        33 ~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~~   93 (444)
                      .-+....+.+.| |||..++.+.|+.||+|+++ +|++|+.+.+..+|+.|+|+.|+.+..
T Consensus        20 edg~~~~d~vrC-iC~~~~~~~~mi~Cd~C~~w-~H~~C~~~~~~~~p~~w~C~~C~~~~~   78 (98)
T 2lv9_A           20 EDGSYGTDVTRC-ICGFTHDDGYMICCDKCSVW-QHIDCMGIDRQHIPDTYLCERCQPRNL   78 (98)
T ss_dssp             TTCCCCCCBCCC-TTSCCSCSSCEEEBTTTCBE-EETTTTTCCTTSCCSSBCCTTTSSSCC
T ss_pred             ccCCCCCCCEEe-ECCCccCCCcEEEcCCCCCc-CcCcCCCCCccCCCCCEECCCCcCCCC
Confidence            334445677889 99999999999999999977 999999999999999999999987643

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.08  E-value=5.9e-11  Score=91.68  Aligned_cols=49  Identities=29%  Similarity=0.711  Sum_probs=43.7

Q ss_pred             cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      .....|.+|++++   .|++||+|+++ ||++|+.+.+.++|+ +|||+.|..+
T Consensus         9 ~~~~~C~vC~~~g---~ll~CD~C~~~-fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQGG---EIILCDTCPRA-YHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCCS---SEEECSSSSCE-EEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCCC---cEEECCCCChh-hhhhccCCCCCCCCCCceECcccccc
Confidence            4467899999864   79999999975 999999999999999 9999999865

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.08  E-value=3e-11  Score=99.82  Aligned_cols=53  Identities=28%  Similarity=0.601  Sum_probs=46.4

Q ss_pred             cccccccccCCCC--CCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355           39 LQVKPCDICGDGG--WPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ   94 (444)
Q Consensus        39 ~d~~vC~vCG~~g--~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~   94 (444)
                      .+...|.+||+++  +++.|++||+|+++ +|+||+.+.  .||+ +|||+.|......
T Consensus        23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~-fH~~Cl~p~--~vP~g~W~C~~C~~~~~~   78 (88)
T 2l43_A           23 DEDAVCSICMDGESQNSNVILFCDMCNLA-VHQECYGVP--YIPEGQWLCRHCLQSRAR   78 (88)
T ss_dssp             CCCCCCSSCCSSSSCSEEEEEECSSSCCC-CCHHHHTCS--SCCSSCCCCHHHHHHTTS
T ss_pred             CCCCcCCcCCCCCCCCCCCEEECCCCCch-hhcccCCCC--ccCCCceECccccCccch
Confidence            4678999999997  88999999999976 999999876  4999 9999999876544

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.04  E-value=6.1e-11  Score=90.87  Aligned_cols=48  Identities=27%  Similarity=0.755  Sum_probs=42.9

Q ss_pred             ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      ....|.+||++|   .|++||+|+++ ||++|+.|.|..+|. +|||+.|...
T Consensus         4 ~~~~C~vC~~~g---~ll~Cd~C~~~-fH~~Cl~ppl~~~p~g~W~C~~C~~~   52 (60)
T 2puy_A            4 HEDFCSVCRKSG---QLLMCDTCSRV-YHLDCLDPPLKTIPKGMWICPRCQDQ   52 (60)
T ss_dssp             CCSSCTTTCCCS---SCEECSSSSCE-ECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred             CCCCCcCCCCCC---cEEEcCCCCcC-EECCcCCCCcCCCCCCceEChhccCh
Confidence            357899999874   79999999966 999999999999999 9999999764

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=98.99  E-value=1.8e-10  Score=110.18  Aligned_cols=48  Identities=40%  Similarity=0.889  Sum_probs=40.2

Q ss_pred             cccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC--cccccccccc
Q 013355           43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSI   91 (444)
Q Consensus        43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~   91 (444)
                      .|.+||..++++.||+||+|+++ +|+||+.|+|..+|.  +|||+.|...
T Consensus       176 ~C~vC~~~~~~~~lL~CD~C~~~-yH~~CL~PPL~~vP~G~~W~Cp~C~~~  225 (226)
T 3ask_A          176 ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRND  225 (226)
T ss_dssp             SCSSSCCCCC--CCEECSSSCCE-ECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred             CCcCCCCCCCCCCeEEcCCCCcc-eeCccCCCCcccCCCCCCCCCcCCcCc
Confidence            79999999999999999999976 999999999999999  7999999753

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=98.96  E-value=2.4e-10  Score=105.97  Aligned_cols=50  Identities=32%  Similarity=0.691  Sum_probs=44.6

Q ss_pred             ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355           40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~   93 (444)
                      ....|.+||++|+   |++||+|+++ +|++|+.|.+..+|. +|+|+.|+....
T Consensus         6 ~~~~C~~C~~~g~---ll~Cd~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~~~   56 (207)
T 3u5n_A            6 NEDWCAVCQNGGD---LLCCEKCPKV-FHLTCHVPTLLSFPSGDWICTFCRDIGK   56 (207)
T ss_dssp             SCSSBTTTCCCEE---EEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCCCCCCCCCCc---eEEcCCCCCc-cCCccCCCCCCCCCCCCEEeCceeCccc
Confidence            4567999998874   9999999976 999999999999999 999999987643

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=98.95  E-value=3e-10  Score=103.23  Aligned_cols=48  Identities=29%  Similarity=0.698  Sum_probs=43.5

Q ss_pred             cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355           41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~   92 (444)
                      ...|.+||++|+   |++||+|+++ +|++|+.|.+..+|+ +|+|+.|+...
T Consensus         4 ~~~C~~C~~~g~---ll~Cd~C~~~-~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            4 EDWCAVCQNGGE---LLCCEKCPKV-FHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             CSSCTTTCCCSS---CEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCccccCCCCCe---eeecCCCCcc-cCccccCCCCCCCCCCCEECccccCcc
Confidence            467999998875   9999999976 999999999999999 99999998754

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.95  E-value=2.5e-10  Score=90.48  Aligned_cols=54  Identities=20%  Similarity=0.413  Sum_probs=48.2

Q ss_pred             cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~   93 (444)
                      .+...|.+||..++.+.|+.||+|+++ +|++|+.+.+..+|. +|||+.|..+..
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD~C~~w-fH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCDDCDDW-YHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECSSSSSE-EEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCCcCCCCCCCCCCCCCEEEcCCCCcc-cccccCCCCccCCCCCCEEChhccCchh
Confidence            456789999999998999999999976 999999998888888 999999987643

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=98.90  E-value=5.3e-10  Score=103.06  Aligned_cols=47  Identities=26%  Similarity=0.599  Sum_probs=42.8

Q ss_pred             cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      ...|.+||++|+   |++||+|+++ +|+||+.|.+..+|. +|+|+.|+..
T Consensus         2 ~~~C~~C~~~g~---ll~Cd~C~~~-~H~~Cl~p~l~~~p~g~W~C~~C~~~   49 (189)
T 2ro1_A            2 ATICRVCQKPGD---LVMCNQCEFC-FHLDCHLPALQDVPGEEWSCSLCHVL   49 (189)
T ss_dssp             CCCBTTTCCCSS---CCCCTTTCCB-CCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred             CCcCccCCCCCc---eeECCCCCch-hccccCCCCcccCCCCCCCCcCccCC
Confidence            357999998874   9999999977 999999999999999 9999999876

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.55  E-value=3.9e-08  Score=82.87  Aligned_cols=51  Identities=22%  Similarity=0.451  Sum_probs=46.1

Q ss_pred             ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccc
Q 013355           38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECR   89 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~   89 (444)
                      ......|.+|+++|+.+.|+.|+.|.+. ||.+|+.+.+..+|. .|+|++|.
T Consensus         4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~-~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            4 GSSGANCAVCDSPGDLLDQFFCTTCGQH-YHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCCSCBTTTCCCCCTTTSEECSSSCCE-ECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCCcCCCCCCCCcCCeECCCCCCC-cChHHhCCccccccccCccCCcCC
Confidence            3457899999999998889999999976 999999998888888 99999996

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=98.50  E-value=3.1e-08  Score=76.39  Aligned_cols=49  Identities=22%  Similarity=0.581  Sum_probs=38.9

Q ss_pred             cccccccccCCCCCCcceeecCCCC--CCceeeccCCccCCCCCC-cccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCK--SAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd--~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      .+...| +|++..+ ..|+.||+|+  +..+|.+|+.  |..+|. .|||+.|..+
T Consensus         8 ~e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~   59 (60)
T 2vnf_A            8 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE   59 (60)
T ss_dssp             -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred             CCCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence            456777 9999876 5699999944  3349999975  889998 9999999764

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=98.42  E-value=1.1e-07  Score=81.41  Aligned_cols=47  Identities=32%  Similarity=0.735  Sum_probs=40.4

Q ss_pred             cccccccccCCCCCCcceeecC--CCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      .....|.+||++|   .|++||  .|+++ +|++|+.  |.++|+ +|+|++|.-.
T Consensus        13 ~~~~~C~~C~~~G---~ll~CD~~~Cp~~-fH~~Cl~--L~~~P~g~W~Cp~c~C~   62 (107)
T 4gne_A           13 MHEDYCFQCGDGG---ELVMCDKKDCPKA-YHLLCLN--LTQPPYGKWECPWHQCD   62 (107)
T ss_dssp             SSCSSCTTTCCCS---EEEECCSTTCCCE-ECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred             CCCCCCCcCCCCC---cEeEECCCCCCcc-cccccCc--CCcCCCCCEECCCCCCC
Confidence            4567899999765   599999  89985 9999986  899999 9999999643

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=98.37  E-value=3.5e-07  Score=72.89  Aligned_cols=53  Identities=25%  Similarity=0.652  Sum_probs=42.5

Q ss_pred             ccccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355           38 MLQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ   94 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~   94 (444)
                      ..+...| +|+...+ ..|+.||+  |.+..+|..|+.  |..+|. .|||+.|......
T Consensus        13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k   68 (71)
T 1wen_A           13 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP   68 (71)
T ss_dssp             TTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSS
T ss_pred             CCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccccc
Confidence            3567788 8999877 46999999  764339999974  889998 9999999876543

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=98.33  E-value=2.6e-07  Score=73.01  Aligned_cols=51  Identities=24%  Similarity=0.511  Sum_probs=45.1

Q ss_pred             cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI   91 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~   91 (444)
                      .+.+.| +||...+.+.|+.||.|+.. +|..|.......+|+.|+|+.|+..
T Consensus        17 ~~~~~C-iC~~~~~~~~MIqCd~C~~W-fH~~Cvgi~~~~~~~~~~C~~C~~s   67 (68)
T 3o70_A           17 QGLVTC-FCMKPFAGRPMIECNECHTW-IHLSCAKIRKSNVPEVFVCQKCRDS   67 (68)
T ss_dssp             TTCCCS-TTCCCCTTCCEEECTTTCCE-EETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred             CCceEe-ECCCcCCCCCEEECCCCCcc-ccccccCcCcccCCCcEECCCCCCC
Confidence            457889 99999998899999999988 9999998776678889999999764

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=98.30  E-value=1.9e-07  Score=72.62  Aligned_cols=49  Identities=22%  Similarity=0.595  Sum_probs=39.7

Q ss_pred             cccccccccCCCCCCcceeecCCCC---CCceeeccCCccCCCCCC-ccccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCK---SAREHIYCMKFLLFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd---~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~   92 (444)
                      .+...| +|++..+. .|+.||+|+   .. +|..|+  .|..+|. .|||+.|+.++
T Consensus         9 ~e~~yC-~C~~~~~g-~MI~CD~c~C~~~W-fH~~Cv--gl~~~p~~~w~Cp~C~~~r   61 (62)
T 2g6q_A            9 NEPTYC-LCNQVSYG-EMIGCDNEQCPIEW-FHFSCV--SLTYKPKGKWYCPKCRGDN   61 (62)
T ss_dssp             -CCEET-TTTEECCS-EEEECSCTTCSSCE-EETGGG--TCSSCCSSCCCCHHHHTCC
T ss_pred             CCCcEE-ECCCCCCC-CeeeeeCCCCCccc-EecccC--CcCcCCCCCEECcCcccCC
Confidence            456778 99997765 699999955   66 999996  4778899 99999998653

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=98.29  E-value=2.2e-07  Score=71.53  Aligned_cols=49  Identities=24%  Similarity=0.638  Sum_probs=39.5

Q ss_pred             cccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      .+...| +|++..+. .|+.||+  |.+..+|..|+  +|..+|. .|||+.|+.+
T Consensus         7 ~e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~~   58 (59)
T 3c6w_A            7 NEPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQE   58 (59)
T ss_dssp             -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHCC
T ss_pred             CCCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccCc
Confidence            456778 99998764 6999999  66434999997  4889998 9999999865

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.27  E-value=4.1e-07  Score=75.94  Aligned_cols=48  Identities=21%  Similarity=0.519  Sum_probs=39.6

Q ss_pred             ccccccccccCCCCCCcceeecCCCC---CCceeeccCCccCCCCCC-cccccc-ccc
Q 013355           38 MLQVKPCDICGDGGWPEQIATCYLCK---SAREHIYCMKFLLFSRPI-VWFCEE-CRS   90 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~ed~LllCD~Cd---~ga~HtYCl~p~L~~VP~-~WfC~e-C~~   90 (444)
                      ..+...| +|+...+. .|+.||.|+   .. +|..|+  .|..+|. .|||+. |..
T Consensus        23 ~~~~~yC-iC~~~~~g-~MI~CD~c~C~~eW-fH~~CV--gl~~~p~~~W~Cp~cC~~   75 (90)
T 2jmi_A           23 NQEEVYC-FCRNVSYG-PMVACDNPACPFEW-FHYGCV--GLKQAPKGKWYCSKDCKE   75 (90)
T ss_dssp             -CCSCCS-TTTCCCSS-SEECCCSSSCSCSC-EETTTS--SCSSCTTSCCCSSHHHHH
T ss_pred             CCCCcEE-EeCCCCCC-CEEEecCCCCcccc-CcCccC--CCCcCCCCCccCChhhcc
Confidence            3456778 99998776 499999977   66 999996  5888999 999999 874

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.23  E-value=7.9e-07  Score=74.35  Aligned_cols=52  Identities=25%  Similarity=0.645  Sum_probs=41.9

Q ss_pred             ccccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355           38 MLQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~   93 (444)
                      ..+...| +|+...+ ..|+.||+  |.+..+|..|+  .|..+|. .|||+.|+....
T Consensus        33 ~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~~~   87 (91)
T 1weu_A           33 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQESG   87 (91)
T ss_dssp             SCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCCCS
T ss_pred             CCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCcCC
Confidence            3566788 9999877 46999999  65434999997  4788999 999999987654

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=98.15  E-value=8.8e-07  Score=66.07  Aligned_cols=49  Identities=24%  Similarity=0.567  Sum_probs=42.2

Q ss_pred             ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccc
Q 013355           40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRS   90 (444)
Q Consensus        40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~   90 (444)
                      |.+.| +||...+.+.|+.||.|+.. +|.-|.......+|+.|+|+.|+.
T Consensus         3 d~~~C-~C~~~~~~~~MI~Cd~C~~W-~H~~Cvgi~~~~~~~~~~C~~C~~   51 (52)
T 3o7a_A            3 DLVTC-FCMKPFAGRPMIECNECHTW-IHLSCAKIRKSNVPEVFVCQKCRD   51 (52)
T ss_dssp             TCBCS-TTCCBCTTCCEEECTTTCCE-EETTTTTCCGGGCCSSCCCHHHHT
T ss_pred             cCeEE-EeCCcCCCCCEEEcCCCCcc-ccccccCCCcccCCCcEECcCCCC
Confidence            35667 89999988899999999987 999999866666788999999975

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=98.07  E-value=1.3e-06  Score=68.48  Aligned_cols=52  Identities=25%  Similarity=0.560  Sum_probs=41.4

Q ss_pred             cccccccccCCCCCCcceeecCC--CCCCceeeccCCcc-----CCCCCCccccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFL-----LFSRPIVWFCEECRSIK   92 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~-----L~~VP~~WfC~eC~~~~   92 (444)
                      ++.+.| +||...+...|+.||.  |+.. +|..|+...     ...+|+.|+|+.|+.++
T Consensus         8 e~~v~C-~C~~~~~~g~mI~CD~~~C~~W-~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r   66 (68)
T 2rsd_A            8 EAKVRC-ICSSTMVNDSMIQCEDQRCQVW-QHLNCVLIPDKPGESAEVPPVFYCELCRLSR   66 (68)
T ss_dssp             SCEECC-TTCCCSCCSCEEECSCTTTCEE-EETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred             CCCEEe-ECCCCcCCCCEEEECCCCCCCe-EchhhCCCCcccccccCCCCcEECcCccCcc
Confidence            446778 8999988899999994  9987 999998532     12466789999998654

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.00  E-value=2.7e-06  Score=67.16  Aligned_cols=54  Identities=22%  Similarity=0.427  Sum_probs=43.0

Q ss_pred             ccccccccccCCCCC-CcceeecCCCCCCceeeccCCccCC-CCCCcccccccccccC
Q 013355           38 MLQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLF-SRPIVWFCEECRSIKG   93 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~-~VP~~WfC~eC~~~~~   93 (444)
                      ..+.+.| +||...+ .+.|+.||.|++. +|..|+..... .+|..|+|+.|+.+.+
T Consensus        13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W-~H~~Cvg~~~~~~~~~~~~C~~C~~~~~   68 (72)
T 1wee_A           13 DNWKVDC-KCGTKDDDGERMLACDGCGVW-HHTRCIGINNADALPSKFLCFRCIELSG   68 (72)
T ss_dssp             CSSEECC-TTCCCSCCSSCEEECSSSCEE-EETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred             CCcceEe-eCCCccCCCCcEEECCCCCCc-cCCeeeccCccccCCCcEECCCccCCCC
Confidence            3567889 8999865 4589999999988 99999875532 4667999999987643

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=1.9e-06  Score=68.46  Aligned_cols=50  Identities=22%  Similarity=0.505  Sum_probs=40.2

Q ss_pred             cccccccccCCCCCCcceeecCCCC--CCceeeccCCccCCCCCC-ccccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCK--SAREHIYCMKFLLFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd--~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~   92 (444)
                      .+...| +|+...+. .|+.||.||  ..-+|..|+  .|..+|. .|||+.|....
T Consensus         4 ~~~~yC-~C~~~~~g-~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~~   56 (70)
T 1x4i_A            4 GSSGYC-ICNQVSYG-EMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTAAM   56 (70)
T ss_dssp             SCCCCS-TTSCCCCS-SEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHHHH
T ss_pred             CCCeEE-EcCCCCCC-CEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCccc
Confidence            456677 79998765 899999987  334999996  5778888 99999998753

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.99  E-value=3.8e-06  Score=64.51  Aligned_cols=56  Identities=23%  Similarity=0.374  Sum_probs=44.6

Q ss_pred             ccccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCC--CCcccccccccccCC
Q 013355           38 MLQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSR--PIVWFCEECRSIKGQ   94 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~V--P~~WfC~eC~~~~~~   94 (444)
                      ..+...|.+|+...+ .+.|+.||.|++. +|..|+......+  ++.|+|+.|+.+.+.
T Consensus         3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~W-fH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~   61 (64)
T 1we9_A            3 SGSSGQCGACGESYAADEFWICCDLCEMW-FHGKCVKITPARAEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             CSSCCCCSSSCCCCCSSSCEEECSSSCCE-EETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred             CCCCCCCCCCCCccCCCCCEEEccCCCCC-CCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence            356788999999875 5789999999988 9999986554444  349999999886543

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.81  E-value=8.3e-06  Score=65.45  Aligned_cols=53  Identities=25%  Similarity=0.567  Sum_probs=43.1

Q ss_pred             cccccccccCCCCCCcceeecC--CCCCCceeeccCCccCC------CCCCcccccccccccC
Q 013355           39 LQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKFLLF------SRPIVWFCEECRSIKG   93 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p~L~------~VP~~WfC~eC~~~~~   93 (444)
                      .+.+.| +||..++...|+-||  .|+.. +|.-|....-.      .+|+.|+|+.|+....
T Consensus        14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W-~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~   74 (78)
T 1wew_A           14 EIKVRC-VCGNSLETDSMIQCEDPRCHVW-QHVGCVILPDKPMDGNPPLPESFYCEICRLTSG   74 (78)
T ss_dssp             CCCCCC-SSCCCCCCSCEEECSSTTTCCE-EEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred             CCCEEe-ECCCcCCCCCEEEECCccCCcc-ccCEEEccccccccccccCCCCEECCCCCcccC
Confidence            457788 999998888999999  99986 99999864332      4567999999987653

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.79  E-value=3.9e-06  Score=66.65  Aligned_cols=54  Identities=19%  Similarity=0.352  Sum_probs=42.2

Q ss_pred             cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCC------CCCcccccccccccCC
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFS------RPIVWFCEECRSIKGQ   94 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~------VP~~WfC~eC~~~~~~   94 (444)
                      .+.+.| +||...+.+.|+.||.|+.. +|..|+......      .|..|+|+.|+...+.
T Consensus        14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~W-fH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p   73 (76)
T 1wem_A           14 PNALYC-ICRQPHNNRFMICCDRCEEW-FHGDCVGISEARGRLLERNGEDYICPNCTILSGP   73 (76)
T ss_dssp             TTCCCS-TTCCCCCSSCEEECSSSCCE-EEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred             CCCCEE-ECCCccCCCCEEEeCCCCCc-EeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence            345677 99999998899999999987 999997533221      2459999999876543

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.78  E-value=6.5e-06  Score=66.01  Aligned_cols=55  Identities=20%  Similarity=0.391  Sum_probs=43.0

Q ss_pred             cccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCC--CCcccccccccccCCc
Q 013355           39 LQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSR--PIVWFCEECRSIKGQV   95 (444)
Q Consensus        39 ~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~V--P~~WfC~eC~~~~~~~   95 (444)
                      .+.+.| +||...+ ...|+.||.|+.. +|..|+......+  ++.|+|+.|+...+..
T Consensus        10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~W-fH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~   67 (79)
T 1wep_A           10 LVPVYC-LCRQPYNVNHFMIECGLCQDW-FHGSCVGIEEENAVDIDIYHCPDCEAVFGPS   67 (79)
T ss_dssp             CCCCCS-TTSCSCCSSSCEEEBTTTCCE-EEHHHHTCCHHHHTTCSBBCCTTTTTTSCSC
T ss_pred             CCccEE-EcCCccCCCCceEEcCCCCCc-EEeeecCcccccccCCCeEECCCcccccCCC
Confidence            456677 9999875 7899999999987 9999986443333  4599999999876543

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=97.77  E-value=3.3e-06  Score=75.69  Aligned_cols=84  Identities=20%  Similarity=0.363  Sum_probs=58.7

Q ss_pred             ccccccccccc-----------chhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecCCCCCCceeec
Q 013355            2 CCIACYELTCT-----------FNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIY   70 (444)
Q Consensus         2 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtY   70 (444)
                      -|.+|+..-=+           |...+|+.|...+++-.-..  .. ..-...|.+||++|.   |+.||.|-+. +|..
T Consensus        16 ~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~--d~-Dg~~d~C~vC~~GG~---LlcCD~Cpr~-Fh~~   88 (142)
T 2lbm_A           16 SCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISR--DS-DGMDEQCRWCAEGGN---LICCDFCHNA-FCKK   88 (142)
T ss_dssp             BCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCB--CT-TSCBCSCSSSCCCSS---EEECSSSCCE-EEHH
T ss_pred             EecCCCCccccccccchhcCCCccccccHHHHHHHhcCCcee--cC-CCCCCeecccCCCCc---EEeCCCCCCe-eeHh
Confidence            47788765311           22345777766665543222  11 223578999999984   8999999976 9999


Q ss_pred             cCCccCC-----C--CCC-ccccccccccc
Q 013355           71 CMKFLLF-----S--RPI-VWFCEECRSIK   92 (444)
Q Consensus        71 Cl~p~L~-----~--VP~-~WfC~eC~~~~   92 (444)
                      |+.+.+.     +  .|+ +|.|+.|..+.
T Consensus        89 Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p  118 (142)
T 2lbm_A           89 CILRNLGRKELSTIMDENNQWYCYICHPEP  118 (142)
T ss_dssp             HHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred             hcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence            9998886     3  588 99999998753

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=97.73  E-value=6.2e-06  Score=65.65  Aligned_cols=57  Identities=19%  Similarity=0.336  Sum_probs=44.0

Q ss_pred             ccccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCCC--cccccccccccCCcc
Q 013355           38 MLQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSIKGQVL   96 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~~~~~~   96 (444)
                      ..+.+.| +||...+ .+.|+.||.|+.. +|.-|+......++.  .|+|+.|+...+..+
T Consensus         7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~W-fH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~~   66 (75)
T 3kqi_A            7 ATVPVYC-VCRLPYDVTRFMIECDACKDW-FHGSCVGVEEEEAPDIDIYHCPNCEKTHGKST   66 (75)
T ss_dssp             CCCCEET-TTTEECCTTSCEEECTTTCCE-EEHHHHTCCTTTGGGBSSCCCHHHHHHHCCCC
T ss_pred             CCCeeEE-ECCCcCCCCCCEEEcCCCCCC-EecccccccccccCCCCEEECCCCcccCCCCe
Confidence            3445566 9999865 5799999999987 999998755555553  799999998766543

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=97.72  E-value=3.6e-06  Score=71.46  Aligned_cols=48  Identities=31%  Similarity=0.758  Sum_probs=39.3

Q ss_pred             cccccccCCC------CCCcceeecCCCCCCceeeccCCc---cCCCCCC-cccccccc
Q 013355           41 VKPCDICGDG------GWPEQIATCYLCKSAREHIYCMKF---LLFSRPI-VWFCEECR   89 (444)
Q Consensus        41 ~~vC~vCG~~------g~ed~LllCD~Cd~ga~HtYCl~p---~L~~VP~-~WfC~eC~   89 (444)
                      ..+|.+|...      |..+.|+.|++|.+. +|.+|+..   ....||. .|+|++|+
T Consensus         5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~-~H~~Cl~~~~~~~~~~~~~~W~C~~C~   62 (112)
T 3v43_A            5 IPICSFCLGTKEQNREKKPEELISCADCGNS-GHPSCLKFSPELTVRVKALRWQCIECK   62 (112)
T ss_dssp             CSSBTTTCCCTTCCTTSCCCCCEECTTTCCE-ECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred             CccccccCCchhhCcCCCchhceEhhhcCCC-CCCchhcCCHHHHHHhhccccccccCC
Confidence            5679999776      577899999999976 99999963   2236778 99999996

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=97.57  E-value=2.7e-05  Score=66.00  Aligned_cols=51  Identities=25%  Similarity=0.524  Sum_probs=39.7

Q ss_pred             cccccccCCCC-CCcceeecC-CCCCCceeeccCCccCCC--------CCC-cccccccccccCC
Q 013355           41 VKPCDICGDGG-WPEQIATCY-LCKSAREHIYCMKFLLFS--------RPI-VWFCEECRSIKGQ   94 (444)
Q Consensus        41 ~~vC~vCG~~g-~ed~LllCD-~Cd~ga~HtYCl~p~L~~--------VP~-~WfC~eC~~~~~~   94 (444)
                      ...|.+|+..- +.+.|+.|| .|++. +|.-|..  |..        -|. .|+|+.|..+...
T Consensus         3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~W-fH~~CVg--lt~~~~~~i~~~~~~~~~Cp~C~~~~~~   64 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQDAILCEASCQKW-FHRECTG--MTESAYGLLTTEASAVWACDLCLKTKEG   64 (105)
T ss_dssp             CCBCTTTCSBCCTTSCEEECTTTTCCE-EEGGGTT--CCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred             cCCCCCCCCccCCCCCEEEecCCcccc-cccccCC--cCHHHHHhhccCCCCCEECccccCcCCC
Confidence            35799999983 345799998 99988 9999964  443        366 9999999876543

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=97.50  E-value=1.6e-05  Score=67.77  Aligned_cols=47  Identities=34%  Similarity=0.838  Sum_probs=38.3

Q ss_pred             ccccccCCCC-------CCcceeecCCCCCCceeeccCCccCC---CCCC-cccccccc
Q 013355           42 KPCDICGDGG-------WPEQIATCYLCKSAREHIYCMKFLLF---SRPI-VWFCEECR   89 (444)
Q Consensus        42 ~vC~vCG~~g-------~ed~LllCD~Cd~ga~HtYCl~p~L~---~VP~-~WfC~eC~   89 (444)
                      ..|.+|..++       +.+.|+.|+.|.+. +|.+|+.+.+.   .+|. .|+|++|.
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~-~H~~Cl~~~~~~~~~~~~~~W~C~~C~   59 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRS-GHPTCLQFTLNMTEAVKTYKWQCIECK   59 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCCCEECSSSCCE-ECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred             CcCccCCCCccccccCCCCCCCeEeCCCCCc-cchhhCCChhhhhhccCCCccCccccC
Confidence            3688997654       56799999999976 99999986533   5788 99999995

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=97.49  E-value=6.5e-06  Score=72.81  Aligned_cols=83  Identities=20%  Similarity=0.360  Sum_probs=58.1

Q ss_pred             ccccccccccc-----------chhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecCCCCCCceeec
Q 013355            2 CCIACYELTCT-----------FNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIY   70 (444)
Q Consensus         2 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtY   70 (444)
                      -|.||+..-=.           |.-++|+.|.+.+++-.-.  +..- .....|.+||++|+   |+.||.|-+. +|..
T Consensus        10 ~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~--~d~D-g~~~~C~vC~dGG~---LlcCd~Cpr~-Fc~~   82 (129)
T 3ql9_A           10 SCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS--RDSD-GMDEQCRWCAEGGN---LICCDFCHNA-FCKK   82 (129)
T ss_dssp             BCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCC--BCTT-SCBSSCTTTCCCSE---EEECSSSSCE-EEHH
T ss_pred             EeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccc--cCCC-CCCCcCeecCCCCe---eEecCCCchh-hhHH
Confidence            47788765311           2245677777766655332  2222 22456999999865   8899999966 9999


Q ss_pred             cCCccC-----CCC--CC-cccccccccc
Q 013355           71 CMKFLL-----FSR--PI-VWFCEECRSI   91 (444)
Q Consensus        71 Cl~p~L-----~~V--P~-~WfC~eC~~~   91 (444)
                      |+.+.+     .++  |+ .|.|.-|..+
T Consensus        83 Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~  111 (129)
T 3ql9_A           83 CILRNLGRRELSTIMDENNQWYCYICHPE  111 (129)
T ss_dssp             HHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred             HhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence            998763     455  77 9999999775

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.45  E-value=1.1e-05  Score=72.10  Aligned_cols=52  Identities=21%  Similarity=0.339  Sum_probs=40.4

Q ss_pred             cccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCC--CCCccccccccccc
Q 013355           39 LQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFS--RPIVWFCEECRSIK   92 (444)
Q Consensus        39 ~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~--VP~~WfC~eC~~~~   92 (444)
                      .+...| +||..++ .+.|+.||.|++. +|..|.......  .++.|+|+.|+...
T Consensus         6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~W-fH~~Cv~~~~~~~~~~~~~~C~~C~~~~   60 (174)
T 2ri7_A            6 DTKLYC-ICKTPEDESKFYIGCDRCQNW-YHGRCVGILQSEAELIDEYVCPQCQSTE   60 (174)
T ss_dssp             -CCEET-TTTEECCTTSCEEECTTTCCE-EEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred             CCCcEe-eCCCCCCCCCCEeECCCCCch-hChhhcCCchhhccCccCeecCCCcchh
Confidence            456789 9999875 6679999999987 999998543222  24599999998764

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=97.31  E-value=5e-05  Score=59.55  Aligned_cols=48  Identities=27%  Similarity=0.581  Sum_probs=37.8

Q ss_pred             cccccccccCCCC-CCcceeecC-CCCCCceeeccCCccCCC--------CCC-cccccccc
Q 013355           39 LQVKPCDICGDGG-WPEQIATCY-LCKSAREHIYCMKFLLFS--------RPI-VWFCEECR   89 (444)
Q Consensus        39 ~d~~vC~vCG~~g-~ed~LllCD-~Cd~ga~HtYCl~p~L~~--------VP~-~WfC~eC~   89 (444)
                      .....|.+|+... +.+.|+.|| .|++. +|.-|..  |..        -|. .|+|+.|.
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~W-fH~~Cvg--lt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCEASCQKW-FHRICTG--MTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBTTTTCCE-EEHHHHT--CCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CCcCcCccCCCccCCCCCeEecccCcccc-CchhccC--CCHHHHHHhhccCCCcEECcCcc
Confidence            4567899999984 567899999 99988 9999964  443        377 99999996

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=97.19  E-value=5.3e-05  Score=63.89  Aligned_cols=43  Identities=19%  Similarity=0.532  Sum_probs=31.3

Q ss_pred             CCCCcceeecCCCCCCceeeccCCccCCCC-----CCcccccccccccC
Q 013355           50 GGWPEQIATCYLCKSAREHIYCMKFLLFSR-----PIVWFCEECRSIKG   93 (444)
Q Consensus        50 ~g~ed~LllCD~Cd~ga~HtYCl~p~L~~V-----P~~WfC~eC~~~~~   93 (444)
                      .++++.|+.|+.|++. +|..|+.+....+     |+.|+|+.|.+++.
T Consensus        69 ~~~~~~m~~C~~C~~~-~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~~  116 (117)
T 4bbq_A           69 QDFEKKLMECCICNEI-VHPGCLQMDGEGLLNEELPNCWECPKCYQEDS  116 (117)
T ss_dssp             CCGGGSCEEETTTCCE-ECGGGCCSCCCCEECSSSSSEEECTTTC----
T ss_pred             cccCcceEEeeecCCe-EECCCCCCCccccccccCCCCeECCCCcCCCC
Confidence            3456779999999987 9999998765543     34699999988653

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=97.15  E-value=8.4e-05  Score=55.39  Aligned_cols=46  Identities=15%  Similarity=0.231  Sum_probs=35.0

Q ss_pred             cccccCCCCC-CcceeecC-CCCCCceeeccCCccCCCC-CCcccccccc
Q 013355           43 PCDICGDGGW-PEQIATCY-LCKSAREHIYCMKFLLFSR-PIVWFCEECR   89 (444)
Q Consensus        43 vC~vCG~~g~-ed~LllCD-~Cd~ga~HtYCl~p~L~~V-P~~WfC~eC~   89 (444)
                      .|.+|+...+ .+.|+.|| +|++. +|..|........ +..|+|+.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~W-fH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEW-FHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCE-EETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCcc-CcccccCCCccccCCCCEECCCCC
Confidence            5789999875 67899999 89988 9999975332222 2499999995

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=97.00  E-value=0.00018  Score=66.63  Aligned_cols=53  Identities=17%  Similarity=0.354  Sum_probs=41.6

Q ss_pred             ccccccCCCCCCc----ceeecCCCCCCceeeccCCccC------CCCCC--cccccccccccCCc
Q 013355           42 KPCDICGDGGWPE----QIATCYLCKSAREHIYCMKFLL------FSRPI--VWFCEECRSIKGQV   95 (444)
Q Consensus        42 ~vC~vCG~~g~ed----~LllCD~Cd~ga~HtYCl~p~L------~~VP~--~WfC~eC~~~~~~~   95 (444)
                      ..|.+|+..-+++    .|+-||.|++. +|.-|....-      ..+|+  .|+|+.|+...+..
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W-~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~   67 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRW-VHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE   67 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCE-EEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcc-cchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence            5699999986655    39999999998 9999985421      13566  89999999987653

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=96.47  E-value=0.00089  Score=70.85  Aligned_cols=44  Identities=23%  Similarity=0.435  Sum_probs=32.4

Q ss_pred             CCcceeecCCCCCCceeeccCCccCCCCC--CcccccccccccCCcc
Q 013355           52 WPEQIATCYLCKSAREHIYCMKFLLFSRP--IVWFCEECRSIKGQVL   96 (444)
Q Consensus        52 ~ed~LllCD~Cd~ga~HtYCl~p~L~~VP--~~WfC~eC~~~~~~~~   96 (444)
                      ....|+-||.|+.. +|.-|....-....  +.|+|+.|+...|...
T Consensus        54 ~~~~mI~CD~C~~W-fH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps~   99 (528)
T 3pur_A           54 NDFQWIGCDSCQTW-YHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSI   99 (528)
T ss_dssp             STTSEEECTTTCCE-EEGGGTTCCGGGTTTEEECCCTTTHHHHCSCE
T ss_pred             cCCCEEECCCCCcC-CCCcCCCCChhHhcCCCeEECcCCcCCCCCcc
Confidence            34578899999988 99999764433322  2999999998766543

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=96.44  E-value=0.00041  Score=72.53  Aligned_cols=55  Identities=20%  Similarity=0.404  Sum_probs=41.9

Q ss_pred             ccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCC--CcccccccccccCCcc
Q 013355           40 QVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRP--IVWFCEECRSIKGQVL   96 (444)
Q Consensus        40 d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP--~~WfC~eC~~~~~~~~   96 (444)
                      +...| +||...+ ...|+-||.|+.. +|..|....-....  +.|+|+.|+...+...
T Consensus        36 ~~~yC-~C~~~~d~~~~MIqCd~C~~W-fH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~   93 (488)
T 3kv5_D           36 PPVYC-VCRQPYDVNRFMIECDICKDW-FHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSL   93 (488)
T ss_dssp             CCEET-TTTEECCTTSCEEEBTTTCCE-EEHHHHTCCGGGGGGEEEBCCHHHHHHHCSCE
T ss_pred             CCeEE-eCCCcCCCCCCeEEccCCCCc-eeeeecCcCcccccCCCEEECCCCcCCcCcch
Confidence            44566 9999865 7889999999987 99999864433332  3799999998766543

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=95.58  E-value=0.0012  Score=68.39  Aligned_cols=54  Identities=15%  Similarity=0.297  Sum_probs=40.7

Q ss_pred             ccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCC--CcccccccccccCCcc
Q 013355           42 KPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRP--IVWFCEECRSIKGQVL   96 (444)
Q Consensus        42 ~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP--~~WfC~eC~~~~~~~~   96 (444)
                      .+..+||...+ .+.|+-||.|+.. +|.-|....-...+  +.|+|+.|+...+...
T Consensus         5 ~~yCiC~~~~d~~~~MIqCD~C~~W-fH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~   61 (447)
T 3kv4_A            5 PVYCLCRLPYDVTRFMIECDMCQDW-FHGSCVGVEEEKAADIDLYHCPNCEVLHGPSI   61 (447)
T ss_dssp             CEETTTTEECCTTSCEEECTTTCCE-EEHHHHTCCHHHHTTEEECCCHHHHHHHCCCE
T ss_pred             CeEEeCCCcCCCCCCeEEcCCCCcc-cccccCCcCcccccCCCEEECCCCccccCCch
Confidence            34459999865 6889999999987 99999753322332  3899999998776543

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=94.89  E-value=0.0068  Score=50.63  Aligned_cols=48  Identities=23%  Similarity=0.554  Sum_probs=39.7

Q ss_pred             ccccccccCCCCCCcceeecCCCCCCceeeccCCcc------------CCCCCC-cccccccc
Q 013355           40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFL------------LFSRPI-VWFCEECR   89 (444)
Q Consensus        40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~------------L~~VP~-~WfC~eC~   89 (444)
                      ....|+||..-.. +.|+-|.-|.|. +|+-|++.+            +..-+. -|.|++|.
T Consensus        14 ~D~~C~VC~~~t~-~~l~pCRvC~Rv-fH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce   74 (89)
T 1wil_A           14 NDEMCDVCEVWTA-ESLFPCRVCTRV-FHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CSCCCTTTCCCCS-SCCSSCSSSSSC-CCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             CCcccCccccccc-cceecccccccc-ccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence            4678999997774 558899999977 999999876            556677 99999994

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=90.44  E-value=0.059  Score=44.57  Aligned_cols=36  Identities=19%  Similarity=0.416  Sum_probs=28.9

Q ss_pred             eeecCCCCCCceeeccCCccC------CCCCC--ccccccccccc
Q 013355           56 IATCYLCKSAREHIYCMKFLL------FSRPI--VWFCEECRSIK   92 (444)
Q Consensus        56 LllCD~Cd~ga~HtYCl~p~L------~~VP~--~WfC~eC~~~~   92 (444)
                      |+.||.|+++ +|.-|....-      ..+|+  .|.|+.|....
T Consensus         2 mi~c~~c~~w-~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~   45 (140)
T 2ku7_A            2 MMQCGKCDRW-VHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   45 (140)
T ss_dssp             CCCCSCCSSC-HHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred             ccccccCCCc-cCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence            7899999998 9999975432      45675  89999998754

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=88.67  E-value=0.05  Score=55.72  Aligned_cols=84  Identities=23%  Similarity=0.420  Sum_probs=56.8

Q ss_pred             cccccccccc-----cchhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecC--CCCCCceeeccCCc
Q 013355            2 CCIACYELTC-----TFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKF   74 (444)
Q Consensus         2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p   74 (444)
                      -|.+|++..=     .|.-.+|+.|...+++-+-...   ..--...|.+||.+|   .|++||  .|.+. +=.-|++-
T Consensus        52 ~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D---~DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~-FC~~Ci~~  124 (386)
T 2pv0_B           52 ICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYD---DDGYQSYCSICCSGE---TLLICGNPDCTRC-YCFECVDS  124 (386)
T ss_dssp             SBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCBC---SSSSBCSCTTTCCCS---SCEECCSTTCCCE-ECHHHHHH
T ss_pred             eeCCCCCcCccccCCCcCcchhhHHHHHHhccCcccC---CCCCcccceEcCCCC---eEEEeCCCCCCcc-hHHHHHHH
Confidence            4899987631     1344578888877776654332   122356899999987   499999  99876 44777654


Q ss_pred             cCC-----CCC-C-ccccccccccc
Q 013355           75 LLF-----SRP-I-VWFCEECRSIK   92 (444)
Q Consensus        75 ~L~-----~VP-~-~WfC~eC~~~~   92 (444)
                      .+.     ++- . .|.|--|.++.
T Consensus       125 n~g~~~~~~i~~~d~W~Cf~C~p~p  149 (386)
T 2pv0_B          125 LVGPGTSGKVHAMSNWVCYLCLPSS  149 (386)
T ss_dssp             HTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred             hcChhHHHHhhccCCceEEEcCCcc
Confidence            442     222 2 89999999875

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=88.18  E-value=0.1  Score=47.71  Aligned_cols=84  Identities=21%  Similarity=0.391  Sum_probs=54.9

Q ss_pred             cccccccccc-----cchhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecC--CCCCCceeeccCCc
Q 013355            2 CCIACYELTC-----TFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKF   74 (444)
Q Consensus         2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p   74 (444)
                      -|.+|++..=     .|.-++|+.|...+++-+-..   +...-...|.+||++|   .|++||  .|-+. +=.-|+..
T Consensus        38 ~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~~---DeDG~~~yC~wC~~Gg---~l~~Cdn~~C~r~-FC~~CI~~  110 (159)
T 3a1b_A           38 ICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQY---DDDGYQSYCTICCGGR---EVLMCGNNNCCRC-FCVECVDL  110 (159)
T ss_dssp             SBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTCB---CTTSSBSSCTTTSCCS---EEEECSSTTTCCE-EEHHHHHH
T ss_pred             cccCCCCcCccccCCCccchhhHHHHHHHhhccccc---CCCCCcceeeEecCCC---eEEeeCCCCCCCc-hhHHHHHH
Confidence            4888887421     134456777766665544322   1122356899999886   799999  79965 66666654


Q ss_pred             cCCC------CCC-ccccccccccc
Q 013355           75 LLFS------RPI-VWFCEECRSIK   92 (444)
Q Consensus        75 ~L~~------VP~-~WfC~eC~~~~   92 (444)
                      .+..      +.. .|.|.-|.+..
T Consensus       111 nvG~~~~~~i~~~d~W~Cy~C~P~~  135 (159)
T 3a1b_A          111 LVGPGAAQAAIKEDPWNCYMCGHKG  135 (159)
T ss_dssp             HTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred             hcCHhHHHHHhccCCCEEEecCCcc
Confidence            4332      445 99999999875

>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=87.34  E-value=0.64  Score=38.52  Aligned_cols=48  Identities=25%  Similarity=0.504  Sum_probs=36.7

Q ss_pred             cccccccCCCCCC------cceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355           41 VKPCDICGDGGWP------EQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI   91 (444)
Q Consensus        41 ~~vC~vCG~~g~e------d~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~   91 (444)
                      ...| +|..|-+.      -.|++|..|....-|..|+.  +..-+.+|-|..|+.-
T Consensus        26 A~~C-lc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~--l~~~~~~weC~~C~~v   79 (85)
T 1weq_A           26 APIC-LYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSS--LRPNSKKWECNECLPA   79 (85)
T ss_dssp             CSCC-CSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGT--CCTTCSCCCCTTTSCC
T ss_pred             cccc-CCCCCcccccCCCCEEEEeCcccCCchhHHHHhC--CcCCCCCEECCcCccc
Confidence            4455 67655443      57999999999999999984  4455669999999864

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=86.30  E-value=0.62  Score=35.08  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=29.2

Q ss_pred             cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccccC
Q 013355           41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKG   93 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~~   93 (444)
                      .-+|.+||-.-+++.=        -..+.-........+|++|.|+.|...+.
T Consensus         3 ~y~C~~CGyvYd~~~G--------dp~~gi~pGt~f~~lP~dw~CP~Cg~~K~   47 (52)
T 1e8j_A            3 IYVCTVCGYEYDPAKG--------DPDSGIKPGTKFEDLPDDWACPVCGASKD   47 (52)
T ss_dssp             CEECSSSCCCCCTTTC--------CTTTTCCSSCCTTSSCTTCCCSSSCCCTT
T ss_pred             cEEeCCCCeEEcCCcC--------CcccCcCCCCchHHCCCCCcCCCCCCcHH
Confidence            4578888877765521        01233333445678999999999987543

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=85.89  E-value=0.2  Score=37.07  Aligned_cols=38  Identities=26%  Similarity=0.476  Sum_probs=25.9

Q ss_pred             ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355           40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK   92 (444)
Q Consensus        40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~   92 (444)
                      ..-+|.+||-.-+++.---               ....++|++|.||.|...+
T Consensus         3 ~~y~C~vCGyvyd~~~Gd~---------------t~f~~lP~dw~CP~Cg~~k   40 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPAEHDN---------------VPFDQLPDDWCCPVCGVSK   40 (46)
T ss_dssp             CCEEETTTCCEECGGGGTT---------------CCGGGSCTTCBCTTTCCBG
T ss_pred             CEEECCCCCeEEeCCcCCC---------------cchhhCCCCCcCcCCCCcH
Confidence            3457888887766542100               2456899999999998753

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=85.67  E-value=0.36  Score=36.82  Aligned_cols=44  Identities=23%  Similarity=0.254  Sum_probs=26.5

Q ss_pred             cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355           41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK   92 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~   92 (444)
                      .-+|.+||-.-++++--        ..+.-=......++|++|.|+.|...+
T Consensus         3 ~y~C~vCGyvYd~~~Gd--------p~~gi~pGt~fe~lP~dw~CP~Cg~~K   46 (54)
T 4rxn_A            3 KYTCTVCGYIYDPEDGD--------PDDGVNPGTDFKDIPDDWVCPLCGVGK   46 (54)
T ss_dssp             CEEETTTCCEECTTTCB--------GGGTBCTTCCGGGSCTTCBCTTTCCBG
T ss_pred             ceECCCCCeEECCCcCC--------cccCcCCCCChhHCCCCCcCcCCCCcH
Confidence            44688888766654210        011111123445899999999998754

>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A

Probab=81.00  E-value=0.72  Score=36.70  Aligned_cols=46  Identities=22%  Similarity=0.209  Sum_probs=29.3

Q ss_pred             cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK   92 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~   92 (444)
                      +..-+|.+||-.-+++.=-        ..+.-........+|++|.|+.|...+
T Consensus         5 m~~y~C~vCGyiYd~~~Gd--------p~~gi~pGT~f~~lPddw~CP~Cga~K   50 (70)
T 1dx8_A            5 EGKYECEACGYIYEPEKGD--------KFAGIPPGTPFVDLSDSFMCPACRSPK   50 (70)
T ss_dssp             SSCEEETTTCCEECTTTCC--------TTTTCCSSCCGGGSCTTCBCTTTCCBG
T ss_pred             CceEEeCCCCEEEcCCCCC--------cccCcCCCCchhhCCCCCcCCCCCCCH
Confidence            3456788888776655210        122333334456899999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	444
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	5e-04
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.003

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 44 CDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECR 89
          C +C   G  +++  C  C  A  H++C++  L+  P   W C  C+
Sbjct: 3  CKVCRKKGEDDKLILCDECNKA-FHLFCLRPALYEVPDGEWQCPACQ 48

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 44 CDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS 90
          C +C DGG   ++  C  C S+  HI+C+   L   P   W C  C  
Sbjct: 12 CRVCKDGG---ELLCCDTCPSSY-HIHCLNPPLPEIPNGEWLCPRCTC 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	444
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	99.23
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.11
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	98.87
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.69
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.53
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.37
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	98.33
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	98.24
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	98.19
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	97.9
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	97.79
d1weqa_	85	PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculu	89.77
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	81.64

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.3e-12  Score=95.20  Aligned_cols=48  Identities=27%  Similarity=0.817  Sum_probs=45.2

Q ss_pred             cccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      .|.|||..++++.|++||+|++. ||++|+++.+..+|. +|+|++|+..
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~-~H~~C~~p~~~~~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKA-FHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCE-ECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCC-CCCCCCCCCCCcCCCCCEECcCCcCc
Confidence            69999999999999999999976 999999999999999 9999999863

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.7e-11  Score=94.94  Aligned_cols=52  Identities=23%  Similarity=0.495  Sum_probs=44.8

Q ss_pred             ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355           38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~   93 (444)
                      .....+|.+|+++|+   |++||+|+++ ||.+|+.|.+..+|. +|+|+.|+....
T Consensus         4 Dd~c~~C~~C~~~~~---ll~Cd~C~~~-~H~~C~~p~l~~~p~~~W~C~~C~~~~~   56 (70)
T d1fp0a1           4 DDSATICRVCQKPGD---LVMCNQCEFC-FHLDCHLPALQDVPGEEWSCSLCHVLPD   56 (70)
T ss_dssp             SSSSSCCSSSCSSSC---CEECTTSSCE-ECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCCCCCCCCcCE---EEECCCCChh-hccccCCCCcCcCCCCCEECcCCcCcCc
Confidence            345778999987754   9999999976 999999999999999 999999976543

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.2e-10  Score=83.80  Aligned_cols=48  Identities=33%  Similarity=0.812  Sum_probs=42.1

Q ss_pred             cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355           41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK   92 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~   92 (444)
                      ...|.+|++++   .|+.||+|+++ ||.+|+++.+..+|+ .|+|+.|+.+.
T Consensus         9 ~~~C~~C~~~g---~lv~Cd~C~~~-~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           9 MEFCRVCKDGG---ELLCCDTCPSS-YHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             CSSCTTTCCCS---SCBCCSSSCCC-BCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             cCCCcCCCCCC---eEEEeCCCCcc-CchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            34799999765   49999999977 999999999999999 99999998653

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=1.6e-09  Score=86.10  Aligned_cols=53  Identities=25%  Similarity=0.547  Sum_probs=43.5

Q ss_pred             cccccccccCCCCCC--cceeecCCCCCCceeeccCCccCC----CCCC-ccccccccccc
Q 013355           39 LQVKPCDICGDGGWP--EQIATCYLCKSAREHIYCMKFLLF----SRPI-VWFCEECRSIK   92 (444)
Q Consensus        39 ~d~~vC~vCG~~g~e--d~LllCD~Cd~ga~HtYCl~p~L~----~VP~-~WfC~eC~~~~   92 (444)
                      +...+|.+|+..+.+  ..|+.||+|+++ ||++|++|.+.    .+|+ +|||+.|....
T Consensus        14 ~~~~~C~iC~~~~~~~~~~~v~Cd~C~~~-~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~   73 (88)
T d1weva_          14 EMGLACVVCRQMTVASGNQLVECQECHNL-YHQDCHKPQVTDKEVNDPRLVWYCARCTRQM   73 (88)
T ss_dssp             HHCCSCSSSCCCCCCTTCCEEECSSSCCE-EETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred             cCcCCccCCCCccCCCCCeEEEcCCCCCc-cccccCCCcccccccccCCCeEECcccCchH
Confidence            346789999986654  579999999976 99999998765    6888 99999997643

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=3.5e-08  Score=76.84  Aligned_cols=59  Identities=25%  Similarity=0.555  Sum_probs=43.5

Q ss_pred             eccccccccccccccCCCCCCcceee-cCCCCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355           33 QFGHFMLQVKPCDICGDGGWPEQIAT-CYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ   94 (444)
Q Consensus        33 ~~~~~~~d~~vC~vCG~~g~ed~Lll-CD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~   94 (444)
                      ++..-..+.+.| ||+...+++.++. |+.|...-||+.|+  .|..+|+ +|||+.|+...+.
T Consensus         8 ~~~~d~~e~~~C-iC~~~~~~~~i~c~~~~C~~~wfH~~Cv--gl~~~p~~~w~C~~C~~~~gp   68 (71)
T d1wesa_           8 EFAIDPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGDSGP   68 (71)
T ss_dssp             CSCCCSSSCCCS-TTCCCCCSSEECCSCTTCSCCCEETTTT--TCSSCCSSCCCCTTTSSCCSC
T ss_pred             CCCcCCCCCCEE-EeCCCCCCCEEEEECCCCCCcCccCccC--CCCcCCCCcEECcCCccccCc
Confidence            344344555677 9999877774444 67786444999997  6889999 9999999887654

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.37  E-value=8e-08  Score=72.16  Aligned_cols=53  Identities=23%  Similarity=0.446  Sum_probs=44.1

Q ss_pred             ccccccccCCCCCCc-ceeecCCCCCCceeeccCCccCCCCCC--cccccccccccC
Q 013355           40 QVKPCDICGDGGWPE-QIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSIKG   93 (444)
Q Consensus        40 d~~vC~vCG~~g~ed-~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~~~   93 (444)
                      ....|.+|+...+++ .|+.||+|+.. +|..|+.+....++.  .|+|+.|..+.+
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w-~H~~C~~~~~~~~~~~~~w~C~~C~~~~~   60 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMW-FHGKCVKITPARAEHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCE-EETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCcc-CCcccCCcChHHCCCCCeEECcCCcCcCC
Confidence            356899999987765 67889999977 999999987777665  999999987654

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.33  E-value=1.1e-07  Score=73.00  Aligned_cols=51  Identities=22%  Similarity=0.455  Sum_probs=42.2

Q ss_pred             ccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355           42 KPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ   94 (444)
Q Consensus        42 ~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~   94 (444)
                      ..| +|+...+ .+.|+.|+.|++. +|+.|+.+....+|. +|+|+.|+...+.
T Consensus        17 ~~C-~C~~~~~~~~~mv~Cd~C~~w-~H~~C~g~~~~~~~~~~~~C~~C~~~~~p   69 (72)
T d1weea_          17 VDC-KCGTKDDDGERMLACDGCGVW-HHTRCIGINNADALPSKFLCFRCIELSGP   69 (72)
T ss_dssp             ECC-TTCCCSCCSSCEEECSSSCEE-EETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred             EEe-eCCCCcCCCCeEEEeCCCCCc-CchhhcCCccccCCCCcEECcCCcCcCCc
Confidence            457 8998665 4569999999987 999999988787887 9999999887543

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=98.24  E-value=1.5e-07  Score=68.62  Aligned_cols=46  Identities=26%  Similarity=0.617  Sum_probs=37.8

Q ss_pred             cccccccCCCCCCcceeecCC---CCCCceeeccCCccCCCCCC-cccccccccc
Q 013355           41 VKPCDICGDGGWPEQIATCYL---CKSAREHIYCMKFLLFSRPI-VWFCEECRSI   91 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~---Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~   91 (444)
                      .+.| +|+...+++ |+.||.   |... +|..|+  ++..+|. +|+|+.|+.+
T Consensus         2 ~~yC-~C~~~~~~~-mi~Cd~~~C~~~W-fH~~Cv--gl~~~p~~~w~C~~C~~k   51 (51)
T d2pnxa1           2 PTYC-LCHQVSYGE-MIGCDNPDCSIEW-FHFACV--GLTTKPRGKWFCPRCSQE   51 (51)
T ss_dssp             CEET-TTTEECCSE-EEECSCTTCSSCE-EEGGGG--TCSSCCSSCCCCHHHHCC
T ss_pred             CcEE-EcCCCCCCC-EEEEecCCCCCCC-EeCCcc--CCCcCCCCcEECcCCCCc
Confidence            4578 899988777 999987   4544 999997  5788999 9999999863

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=1.6e-07  Score=73.53  Aligned_cols=55  Identities=18%  Similarity=0.347  Sum_probs=42.4

Q ss_pred             cccccccCCCCCC-cceeecCCCCCCceeeccCCccCCCCCC--cccccccccccCCcc
Q 013355           41 VKPCDICGDGGWP-EQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSIKGQVL   96 (444)
Q Consensus        41 ~~vC~vCG~~g~e-d~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~~~~~~   96 (444)
                      ..+|.+|+..+++ +.|+.||.|++. +|..|+......++.  .|+|+.|+...+...
T Consensus        11 ~pv~CiC~~~~~~~~~mI~Cd~C~~W-~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp~~   68 (79)
T d1wepa_          11 VPVYCLCRQPYNVNHFMIECGLCQDW-FHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI   68 (79)
T ss_dssp             CCCCSTTSCSCCSSSCEEEBTTTCCE-EEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCB
T ss_pred             CCeEeECCCccCCCCcEEECCCCCCc-EeccccCcchhcCCCCCEEECccCcCCcCCcc
Confidence            3445599998664 468899999987 999999766556665  799999998766533

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=3.7e-07  Score=70.09  Aligned_cols=53  Identities=21%  Similarity=0.410  Sum_probs=40.8

Q ss_pred             cccccccccCCCCCCcceeecCCCCCCceeeccCCccC-----CCCCC-cccccccccccC
Q 013355           39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLL-----FSRPI-VWFCEECRSIKG   93 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L-----~~VP~-~WfC~eC~~~~~   93 (444)
                      .+...| +||..++.+.|+.||+|++. +|..|+....     ..++. .|+|+.|+...+
T Consensus        14 ~~~~~C-iC~~~~~~~~mi~Cd~C~~w-~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~~   72 (76)
T d1wema_          14 PNALYC-ICRQPHNNRFMICCDRCEEW-FHGDCVGISEARGRLLERNGEDYICPNCTILSG   72 (76)
T ss_dssp             TTCCCS-TTCCCCCSSCEEECSSSCCE-EEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred             CCcCEE-ECCCccCCCeEEEECCCCCc-CCccccCCCcccccccCCCCCcEECCCCcCcCC
Confidence            345668 99999999999999999987 9999975321     12333 799999977544

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.79  E-value=4.9e-06  Score=64.68  Aligned_cols=53  Identities=25%  Similarity=0.570  Sum_probs=40.1

Q ss_pred             cccccccccCCCCCCcceeecC--CCCCCceeeccCCcc------CCCCCCcccccccccccC
Q 013355           39 LQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKFL------LFSRPIVWFCEECRSIKG   93 (444)
Q Consensus        39 ~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p~------L~~VP~~WfC~eC~~~~~   93 (444)
                      .+.+.| +||...+.+.|+.|+  +|+.. +|..|+...      ....|+.|+|+.|....+
T Consensus        14 ~~~~~C-~C~~~~~~~~~i~c~c~~C~~W-~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~   74 (78)
T d1wewa_          14 EIKVRC-VCGNSLETDSMIQCEDPRCHVW-QHVGCVILPDKPMDGNPPLPESFYCEICRLTSG   74 (78)
T ss_dssp             CCCCCC-SSCCCCCCSCEEECSSTTTCCE-EEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred             CCccEe-ECCCccCCCcEEEEeCCCCCcC-CCccccCccccccccccCCCCEEECCCCcCcCC
Confidence            445778 999988888888887  79987 999997431      123445799999987654

>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 7 (NYD-SP6)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.77  E-value=0.19  Score=39.72  Aligned_cols=52  Identities=25%  Similarity=0.516  Sum_probs=38.1

Q ss_pred             ccccccccCCCCCCc------ceeecCCCCCCceeeccCCccCCCCCCcccccccccccCC
Q 013355           40 QVKPCDICGDGGWPE------QIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQ   94 (444)
Q Consensus        40 d~~vC~vCG~~g~ed------~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~~~   94 (444)
                      +...| +|..|-+..      .|++|..|....-|..|..  |..-+.+|.|..|+...+.
T Consensus        25 da~~C-lc~~GR~~~~~~~~W~ii~C~~CGS~gtH~~C~~--l~~~~~~y~C~~C~~v~~~   82 (85)
T d1weqa_          25 DAPIC-LYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSS--LRPNSKKWECNECLPASGP   82 (85)
T ss_dssp             CCSCC-CSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGT--CCTTCSCCCCTTTSCCSSC
T ss_pred             ccccc-cCCCCccccCCCCcEEEEeecccCCccchhhhcC--CcCCCCCEECCcCcchhCc
Confidence            34555 677665533      4999999999999999963  3333459999999876554

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=81.64  E-value=0.22  Score=35.14  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=27.9

Q ss_pred             cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355           41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK   92 (444)
Q Consensus        41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~   92 (444)
                      .-.|.+||-.-+++.-      |         ....+++|++|.|+.|...+
T Consensus         3 ~y~C~~CgyiYd~~~G------d---------gt~Fe~LP~dw~CP~C~a~K   39 (45)
T d6rxna_           3 KYVCNVCGYEYDPAEH------D---------NVPFDQLPDDWCCPVCGVSK   39 (45)
T ss_dssp             CEEETTTCCEECGGGG------T---------TCCGGGSCTTCBCTTTCCBG
T ss_pred             CeEeCCCCeEECcccC------C---------CCCHHHCCCCCCCcCCCCcH
Confidence            4578899988777642      1         25678999999999997654