Citrus Sinensis ID: 013362

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
Protein Sequence
MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDTLALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHPKADNSKDIILTDSNMEVDVSLNT
Secondary Structure (PSIPRED)
cccccccccccccEEEEEccccHHHHHccccccEEEEEcccccccccccccHHHHHHHcccccccccccccccccccccccEEEEEccccEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccHHHHHHcccEEEEEccccEEEEEcccccccccccccccEEEcccccccccccEEEccccccccccccccEEEcccccEEEEEEEEEcccccHHHHccccccEEEEEccccEEEEccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEEEEEccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccEEEEEEEEEEEEcccccccccccccEEEEcccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEcccccEEEEEEccccHEEHccccccEEEEEccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEcccccEEEEEccccEEEEEEcccccEHHEccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcEEEEcccccEEEEEEccccccccEEEccccEccccEEEEcccHEEEccccccccccHHHcEEEEcccccEEEEEEEEcccccEHHcccHcccEEHEccccEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccEEEEccEEEEEEEEccccccccccccEEEcccEEEEEEEEcc
Coil and Loop (DISEMBL)
mrpaasfyhkdddclyivdsenhaiRRADMGRRVLEtvyptsgiskknNSLWAWIMEKLgferdndtksekldpqslifpwhlmkseddNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQmpqdwllhqidsscslkelpyaglisssIAFQNHILLCDIVGQRIMRLnresgvcsnfqfsnfailglpywfafPLERVYAVagghqgswtdHIQRcsllpgridikvnvdipsDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDtlalstpesesniedetttsdlrseddtvhidcavntspgtSEVIISAALYLKLrrypdqqddgrEKYAARISDILKlgrsgamqRDSFIRFLLKSNqdlrdvifvkplhvsiqfdtldhpkadnskdiiltdsnmevdvslnt
Flexible Loop (DISEMBL)
mrpaasfyhkdddclyiVDSENHAIRRADMGRRVLETVyptsgiskknnsLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDTLAlstpesesniedetttsdlrseddtVHIDcavntspgtseVIISAALYLKLRRypdqqddgreKYAARISDILklgrsgamqRDSFIRFLLKSNQDLRDVIFVKPLHVSiqfdtldhpkadnskdiiltdsnmevdvslnt
Low Complexity Region (SEG)
MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDTLALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHPKADNSKDIILTDSNMEVDVSLNT
Disordered region (IsUnstruct)
******FYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFE*************SLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDTLAL************************VHIDCAVNTSPGTSEVIISAALYLKLRRYP********KYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLD*************************
Disordered Region (DISOPRED)
*****SFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLG************DPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTA****************GVAQLWYDELDTLAL*************************HIDCAVNTSPGTSEVIISAALYLK******************ISDILKL*****MQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHP**DNSKDIILTDSNMEVDVSLN*
Disordered Region (DISEMBL)
MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDTLALS******************SEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHPKADNSKDIILTDSNMEVDVSLNT
Disordered Region (DISPRO)
MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDN**KSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDTLALST****************RSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHPKADNSKDIILTDSNMEVDVSLNT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDTLALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHPKADNSKDIILTDSNMEVDVSLNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
255560179	767	catalytic, putative [Ricinus communis] g	0.997	0.577	0.662	1e-175
359480128	705	PREDICTED: uncharacterized protein LOC10	0.993	0.625	0.609	1e-157
449453417	836	PREDICTED: uncharacterized protein LOC10	0.990	0.526	0.523	1e-132
449521828	491	PREDICTED: uncharacterized LOC101209700,	0.990	0.896	0.523	1e-132
356570396	765	PREDICTED: uncharacterized protein LOC10	0.988	0.573	0.520	1e-130
297829252	771	EMB1974 [Arabidopsis lyrata subsp. lyrat	0.990	0.570	0.509	1e-127
186509871	774	NHL domain-containing protein [Arabidops	0.990	0.568	0.512	1e-127
224065332	525	predicted protein [Populus trichocarpa]	0.853	0.721	0.544	1e-124
357469427	784	NHL repeat-containing protein [Medicago	0.990	0.561	0.492	1e-116
297744354	696	unnamed protein product [Vitis vinifera]	0.779	0.497	0.595	1e-115

>gi|255560179|ref|XP_002521107.1| catalytic, putative [Ricinus communis] gi|223539676|gb|EEF41258.1| catalytic, putative [Ricinus communis]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 294/444 (66%), Positives = 354/444 (79%), Gaps = 1/444 (0%)

Query: 1   MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLG 60
           +RPAASFYH  +DCLYIVD+EN AIRRADM RRVLET+YPT  ISK N+S+W WI+ K+G
Sbjct: 325 LRPAASFYHNSEDCLYIVDAENQAIRRADMERRVLETLYPTCSISKNNSSVWTWIVNKMG 384

Query: 61  FERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSK 120
           F R++D KS++ D Q L+FPWHL KS DD+LLIINRSFE+LWIMDLASG+IKE ++GF K
Sbjct: 385 FGRNSDMKSKEFDSQLLMFPWHLFKSVDDSLLIINRSFESLWIMDLASGKIKEIIRGFPK 444

Query: 121 VLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG 180
           +LE CG L+ EKV LLKQMP DWL  QID+SCS + LP+A L+SS   FQNH+++CD V 
Sbjct: 445 ILETCGQLITEKVSLLKQMPNDWLQQQIDASCSPEGLPFASLLSSVTTFQNHLIMCDTVA 504

Query: 181 QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPG 240
           QR+++LNRESG+CSN QFSNF ILG PYW +FPLERVY+ A    G W DH+Q  SLLPG
Sbjct: 505 QRVVKLNRESGICSNIQFSNFGILGFPYWSSFPLERVYSEAPP-DGGWMDHLQSFSLLPG 563

Query: 241 RIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELD 300
           RIDI++NVDIP D +LVE LQEGCIWRQARG A+ +L  E V G+ EKVGVAQ WYD+LD
Sbjct: 564 RIDIRLNVDIPVDVDLVEPLQEGCIWRQARGAATEILGREGVVGTSEKVGVAQQWYDDLD 623

Query: 301 TLALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQ 360
            LA STPESE   ED   +SD++SED  VHIDC+VNTSPGTSEVII  ALYLKLRR PD 
Sbjct: 624 NLAFSTPESEMVKEDSCASSDVKSEDKRVHIDCSVNTSPGTSEVIIYVALYLKLRRDPDS 683

Query: 361 QDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDH 420
           Q+  +EKYAARI+DIL   R G + RDS I+ LLKSN DLRD+IF++PLHV I+ D  DH
Sbjct: 684 QEVSQEKYAARIADILNPARKGGIGRDSCIQLLLKSNADLRDLIFMRPLHVRIKMDCPDH 743

Query: 421 PKADNSKDIILTDSNMEVDVSLNT 444
           PK++N KDIILT+ ++EV+V L T
Sbjct: 744 PKSENGKDIILTNDSIEVNVMLQT 767

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480128|ref|XP_002267331.2| PREDICTED: uncharacterized protein LOC100267131 [Vitis vinifera]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/441 (60%), Positives = 338/441 (76%)

Query: 2   RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGF 61
           RPAASFYH D+DCLY VDSENHAIRRADMG RVLET+YP    +KK N LW+WI+ KLG 
Sbjct: 265 RPAASFYHADEDCLYFVDSENHAIRRADMGTRVLETLYPPCNTNKKKNGLWSWIVNKLGM 324

Query: 62  ERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKV 121
           E+D DTK  + D   L+FPWHL+K  D +L IINRSFETLWIM LASGEIKE V+G  KV
Sbjct: 325 EKDADTKPAEFDSGLLMFPWHLIKLVDGDLFIINRSFETLWIMALASGEIKEVVRGIPKV 384

Query: 122 LEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 181
           LEICG ++MEK+ +L +MP DWL  Q+DS+ SL+ +PYAGL+SS   FQ+ I++CD V Q
Sbjct: 385 LEICGEMIMEKLAVLNKMPHDWLQQQVDSNFSLEGIPYAGLMSSLATFQDDIVICDTVAQ 444

Query: 182 RIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGR 241
           RI+RLN ESG  +N +FSNF ILGLPYWF+FPLERV AV    +G+  DH Q  S LPG+
Sbjct: 445 RILRLNGESGDFTNLEFSNFGILGLPYWFSFPLERVCAVGNLIRGANADHFQSFSFLPGK 504

Query: 242 IDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDT 301
           I+I++ V+IP DTELVE LQ+GCIWR ARG A+VV   ED+  S  KVGVAQ WYDELD 
Sbjct: 505 INIQLMVEIPEDTELVEPLQDGCIWRLARGAAAVVSGVEDLVASSAKVGVAQQWYDELDN 564

Query: 302 LALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQ 361
           LA  TPE ES+ E+E TT D   +++ V IDCAVNTSPGTSEVI+ AALYLKL+R P+ Q
Sbjct: 565 LAFFTPEPESDAEEENTTLDTPFQEEKVRIDCAVNTSPGTSEVIVYAALYLKLKRNPNSQ 624

Query: 362 DDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHP 421
           +   EK AARI +IL+  +SG + R+S I+FL K N+D+ D+IF+KPLHV I  ++L HP
Sbjct: 625 ERNPEKNAARILNILEPEKSGKITRESCIQFLSKWNEDVEDLIFMKPLHVRIGLESLSHP 684

Query: 422 KADNSKDIILTDSNMEVDVSL 442
           KA+N+K+ +LT+++++V+V L
Sbjct: 685 KAENAKETVLTETSIQVNVFL 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453417|ref|XP_004144454.1| PREDICTED: uncharacterized protein LOC101209700 [Cucumis sativus]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/443 (52%), Positives = 316/443 (71%), Gaps = 3/443 (0%)

Query: 2   RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGF 61
           RPAASFYH   +CLY VDSENHAIR+AD+G+RV+ET+YP +  +KK+   W+WIM+K G 
Sbjct: 397 RPAASFYHSTQNCLYFVDSENHAIRKADLGKRVVETLYPENYSNKKSTQFWSWIMDKFGL 456

Query: 62  ERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKV 121
               D + +  +PQS++FPWH+++  DD LLI+NRS  TLW MDL SG+I E V+G S++
Sbjct: 457 GSIPDREVKDFNPQSIMFPWHMIRYMDDRLLILNRSLGTLWTMDLVSGKIIEVVRGLSRI 516

Query: 122 LEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 181
           +E  G L+M+++ ++KQ+P   L    D++ ++   PY  L+SS  +F+N I++CD VGQ
Sbjct: 517 MESYGQLIMDRLSVIKQIPDGMLQRPSDANIAIGGSPYLDLLSSLTSFENCIIICDSVGQ 576

Query: 182 RIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGR 241
            +++ N++SG CS+FQFSNF +LGLPYWFA PL          +G+  DH+Q   LLPG 
Sbjct: 577 VVLKCNKKSGECSSFQFSNFGVLGLPYWFA-PLPEKVITTAEFRGAGIDHLQFFKLLPGE 635

Query: 242 IDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDT 301
           + I++NVD+PSD ELVESL E  IWRQARGTA+ +   E VAG  EKVG AQ WYDELD+
Sbjct: 636 VGIQINVDLPSDIELVESLHEDSIWRQARGTATEISIVEQVAGPSEKVGSAQQWYDELDS 695

Query: 302 LALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQ 361
           LA S  ESE  +ED     +    D+ VHI+CAVNTSPGTSEVI+ AALYL+LRR  D +
Sbjct: 696 LAFSPQESEM-VEDNVRAQNYIG-DNKVHIECAVNTSPGTSEVIVYAALYLRLRRNQDSE 753

Query: 362 DDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHP 421
            +G + +A RI+D L     G M +++ I+FL+ S +DLR++IFVKPLHV I+ D+  HP
Sbjct: 754 GNGEKHHATRIADFLYPESRGKMIKENCIQFLINSKRDLRELIFVKPLHVRIKLDSSGHP 813

Query: 422 KADNSKDIILTDSNMEVDVSLNT 444
           KA+NSK IILT S +EV+VSL++
Sbjct: 814 KAENSKSIILTKSKVEVNVSLSS 836

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521828|ref|XP_004167931.1| PREDICTED: uncharacterized LOC101209700, partial [Cucumis sativus]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/443 (52%), Positives = 315/443 (71%), Gaps = 3/443 (0%)

Query: 2   RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGF 61
           RPAASFYH   +CLY VDSENHAIR+AD+G+RV+ET+YP +  +KK+   W+WIM+K G 
Sbjct: 52  RPAASFYHSTQNCLYFVDSENHAIRKADLGKRVVETLYPENYSNKKSTQFWSWIMDKFGL 111

Query: 62  ERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKV 121
               D + +  +PQS++FPWH+++  DD LLI+NRS  TLW MDL SG+I E V+G S++
Sbjct: 112 GSIPDREVKDFNPQSIMFPWHMIRYMDDRLLILNRSLGTLWTMDLVSGKIIEVVRGLSRI 171

Query: 122 LEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 181
           +E  G L+M+++ ++KQ+P   L    D++ ++   PY  L+SS  +F+N I++CD VGQ
Sbjct: 172 MESYGQLIMDRLSVIKQIPDGMLQRPSDANIAIGGSPYLDLLSSLTSFENCIIICDSVGQ 231

Query: 182 RIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGR 241
            +++ N++SG CS+FQFSNF +LGLPYWFA PL          +G+  DH+Q   LLPG 
Sbjct: 232 VVLKCNKKSGECSSFQFSNFGVLGLPYWFA-PLPEKVITTAEFRGAGIDHLQFFKLLPGE 290

Query: 242 IDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDT 301
           + I++NVD+PSD ELVESL E  IWRQARGTA+ +   E VAG  EKVG AQ WYDELD+
Sbjct: 291 VGIQINVDLPSDIELVESLHEDSIWRQARGTATEISIVEQVAGPSEKVGSAQQWYDELDS 350

Query: 302 LALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQ 361
           LA S  ESE  +ED     +    D+ VHI+CAVNTSPGTSEVI+ AALYL+LRR  D +
Sbjct: 351 LAFSPQESEM-VEDNVRAQNYIG-DNKVHIECAVNTSPGTSEVIVYAALYLRLRRNQDSE 408

Query: 362 DDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHP 421
            +G +  A RI+D L     G M +++ I+FL+ S +DLR++IFVKPLHV I+ D+  HP
Sbjct: 409 GNGEKHRATRIADFLYPESRGKMIKENCIQFLINSKRDLRELIFVKPLHVRIKLDSSGHP 468

Query: 422 KADNSKDIILTDSNMEVDVSLNT 444
           KA+NSK IILT S +EV+VSL++
Sbjct: 469 KAENSKSIILTKSKVEVNVSLSS 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570396|ref|XP_003553375.1| PREDICTED: uncharacterized protein LOC100806465 [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/457 (52%), Positives = 301/457 (65%), Gaps = 18/457 (3%)

Query: 2   RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGF 61
           RPA S+YH  +DCLY VDSEN+AIR+ADMG R +ET+YPTS  +K    +W WIM KLG 
Sbjct: 312 RPAGSYYHATEDCLYFVDSENNAIRKADMGARTVETLYPTSAPNKGGIQIWNWIMSKLGL 371

Query: 62  ERDNDT----KSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKG 117
           E    T    +SE  D + L FPWHL+KS DD   I++R F+TLW+MD+ SG+I E  +G
Sbjct: 372 ESSGKTSVQERSEVFDSK-LYFPWHLLKSPDDTFYIMDRRFQTLWVMDINSGKIDEVFEG 430

Query: 118 FSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCD 177
             ++L+ICG L+M+ + ++ Q+P DW   Q  +   L  L ++ L+SS     NHI +CD
Sbjct: 431 SPRILKICGQLIMKSLSIIDQIPSDWFQQQTKNGFLLGGLQHSDLLSSLATLHNHIFICD 490

Query: 178 IVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAV-----------AGGHQG 226
            VGQRI+++NRESGVCSNF  SN  ILGLPYW  FPLE  YAV           A G  G
Sbjct: 491 PVGQRILKVNRESGVCSNFWLSNLGILGLPYWLNFPLETFYAVELQYSTALSVKANGLSG 550

Query: 227 SWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSL 286
           +  DH+Q   LLPGRIDI + VD+P D ELV  LQE CIW QARG A+     ++V  SL
Sbjct: 551 TPIDHLQHFDLLPGRIDINLRVDLPMDIELVVPLQESCIWYQARGAATETSGMDEV--SL 608

Query: 287 EKVGVAQLWYDELDTLALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVII 346
            K G+AQ WYDELD LA   PESE N++D+        ED+ V     V TSPGTSEVII
Sbjct: 609 NKSGLAQQWYDELDDLAAPKPESEINVQDDNLDKKSVVEDEKVPFSVGVFTSPGTSEVII 668

Query: 347 SAALYLKLRRYPDQQDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFV 406
            AALY KLR  P   +  RE++AARI DIL   RSG ++RD +  FLL+S  DLRD+IF+
Sbjct: 669 YAALYCKLRSVPKSNEGNREEHAARILDILSSKRSGKIERDLWKAFLLQSKGDLRDLIFM 728

Query: 407 KPLHVSIQFDTLDHPKADNSKDIILTDSNMEVDVSLN 443
           KPLH+ ++    DHPKADN +D ILTDS+++VDV LN
Sbjct: 729 KPLHIRLRLSCQDHPKADNGRDFILTDSSIKVDVLLN 765

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829252|ref|XP_002882508.1| EMB1974 [Arabidopsis lyrata subsp. lyrata] gi|297328348|gb|EFH58767.1| EMB1974 [Arabidopsis lyrata subsp. lyrata]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/453 (50%), Positives = 321/453 (70%), Gaps = 13/453 (2%)

Query: 1   MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLG 60
           +RP  + Y +++DCLYIVDSENHAIRRA++  RVLETVYP   + KK+  LW+WIMEK+G
Sbjct: 321 LRPTGTLYDEEEDCLYIVDSENHAIRRANINSRVLETVYPK--VIKKSGGLWSWIMEKMG 378

Query: 61  FERDNDT------KSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA 114
             +D+DT      KSE+ D +SL+FPWH++K  D++LL+IN+SF  LWI+++A+ EI+E 
Sbjct: 379 LGKDDDTTVDADAKSEEFDARSLLFPWHILKRNDESLLVINKSFSKLWIINIATREIEEV 438

Query: 115 VKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHIL 174
           V+GFSK++EICG  + EK+ +LK MP +WL  Q ++  S KE P A L+SS     + I+
Sbjct: 439 VEGFSKIMEICGQSITEKLSVLKHMPSNWLQQQTEAIISCKEQPSASLLSSFTKLGDDIV 498

Query: 175 LCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQR 234
           + DI  QR+++LN +S  CS+ QFSN  ILGLPYW   PLERV+ +A G Q +   H Q 
Sbjct: 499 MTDIDCQRVLKLNIDSRACSSIQFSNIGILGLPYWLFIPLERVFNLANGVQEAHLSHTQE 558

Query: 235 CSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQL 294
             LLPG+I +++N++IP  TELVE +QE CIWRQ RG  S V  A       EKVGV+Q 
Sbjct: 559 LRLLPGKISLRLNIEIPPCTELVEPIQESCIWRQTRGAISEVSSAGSAVEPSEKVGVSQQ 618

Query: 295 WYDELDTLA--LSTPES--ESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAAL 350
           WYDELD+LA  ++ PE+  E   ED   +   R ED  +HIDC V TSPG+SE+I+ AAL
Sbjct: 619 WYDELDSLAKEIANPEAVEEEEEEDVNPSEVEREEDGRIHIDCTVKTSPGSSELIVYAAL 678

Query: 351 YLKLRRYPDQQDDGREKYAARISDILKLGRSG-AMQRDSFIRFLLKSNQDLRDVIFVKPL 409
           YL+L R  + +   +E+ A RI++ILK  R+   M+ D F++ L KS ++LRD++F+KP+
Sbjct: 679 YLRLPRNEETESASQEELARRIAEILKPVRNNTTMKEDLFVKLLSKSKRELRDIVFMKPM 738

Query: 410 HVSIQFDTLDHPKADNSKDIILTDSNMEVDVSL 442
           HV I+ D++DHPKADNS+D+ILTDS++EVD+SL
Sbjct: 739 HVRIRLDSMDHPKADNSRDVILTDSSVEVDISL 771

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186509871|ref|NP_187362.3| NHL domain-containing protein [Arabidopsis thaliana] gi|332640973|gb|AEE74494.1| NHL domain-containing protein [Arabidopsis thaliana]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/453 (51%), Positives = 315/453 (69%), Gaps = 13/453 (2%)

Query: 1   MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLG 60
           +RP  + Y + +DCLYIVDSENHAIRRA++  RVLETVYP   + KK   LW+WIMEK+G
Sbjct: 324 LRPTGTLYDEAEDCLYIVDSENHAIRRANINSRVLETVYPK--VIKKTGGLWSWIMEKMG 381

Query: 61  FERDNDT------KSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA 114
             +D+DT      KSE+ D +SL+FPWH++K +D++LL+IN+SF  LWI++ ASGEI+E 
Sbjct: 382 LGKDDDTTVDADTKSEEFDARSLLFPWHILKRDDESLLVINKSFSKLWIINFASGEIEEV 441

Query: 115 VKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHIL 174
           V+GFSK++EICG  + EK+ +L+ MP +WL  Q  +  S KE P A L+SS     + I+
Sbjct: 442 VEGFSKIIEICGQSITEKLSVLEHMPSNWLQQQTAAIASFKEQPSASLLSSFTKLGDDIV 501

Query: 175 LCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQR 234
           + DI  QR+++LNR+SG CS+ QFSN  ILGLPYW   PLERV+ +A G Q +   H Q 
Sbjct: 502 MTDIACQRVLKLNRDSGACSSIQFSNSGILGLPYWLFIPLERVFNLANGVQEAHLSHTQE 561

Query: 235 CSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQL 294
             LLPG+I I++N++IP  TELVE +QE CIWRQ RG  S    A       EK+GV+Q 
Sbjct: 562 LRLLPGKISIRLNIEIPPCTELVEPIQESCIWRQTRGAISEFSSAGSAVEPSEKIGVSQQ 621

Query: 295 WYDELDTLA--LSTP--ESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAAL 350
           WYDELD+LA  ++ P    E   ED   +   R ED  +HIDC V TSPG+SE+I+ AAL
Sbjct: 622 WYDELDSLAKEIANPEAAEEEEEEDVNPSEVDREEDGRIHIDCPVKTSPGSSELIVYAAL 681

Query: 351 YLKLRRYPDQQDDGREKYAARISDILKLGRS-GAMQRDSFIRFLLKSNQDLRDVIFVKPL 409
           YL+L R  + +   +E+ A +I+ ILK  R+   M+ D F+  L KS ++LRD++F+KP+
Sbjct: 682 YLRLARNEETESATQEELARKIAKILKPVRNITTMKEDLFVNLLSKSKRELRDIVFIKPM 741

Query: 410 HVSIQFDTLDHPKADNSKDIILTDSNMEVDVSL 442
           HV I+ D+ DHPKADNS+D+ILTDS++EVDVSL
Sbjct: 742 HVRIRLDSKDHPKADNSRDVILTDSSVEVDVSL 774

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065332|ref|XP_002301778.1| predicted protein [Populus trichocarpa] gi|222843504|gb|EEE81051.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/441 (54%), Positives = 299/441 (67%), Gaps = 62/441 (14%)

Query: 2   RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGF 61
           RPAASFY  ++DCLYIVDSENHAIRRAD+  RVLETVYP S  SKKNNS+W WIM+KLG 
Sbjct: 147 RPAASFYDDEEDCLYIVDSENHAIRRADLESRVLETVYPKS-FSKKNNSIWTWIMDKLGS 205

Query: 62  ERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKV 121
             + D KSE+ D Q L+FPWHL+KS D+  LII+RSFETLW++DL SGE+KE +KGF  +
Sbjct: 206 RINVDAKSEEFDSQPLVFPWHLLKSVDNTFLIISRSFETLWVIDLVSGEMKECIKGFPNI 265

Query: 122 LEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 181
           LE CG L+  KV LL                  K+LP                       
Sbjct: 266 LETCGQLITGKVSLL------------------KQLP----------------------- 284

Query: 182 RIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGR 241
            I  L +++ V  + +              FP    YA    +  ++ + I  C    GR
Sbjct: 285 -IDYLKQQTDVNCSLK-------------EFP----YATLVSNLTTFENDIVLCD--TGR 324

Query: 242 IDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDELDT 301
           +DI++N+DIP DTELVE LQEGCIWRQARG+A+V+L AEDV GS EK GV+Q WYDELD 
Sbjct: 325 VDIRLNIDIPMDTELVEPLQEGCIWRQARGSATVILGAEDVVGSSEKAGVSQQWYDELDN 384

Query: 302 LALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQ 361
           LA STP  E   E+++ TSD+  +D+ +HIDCAVNTSPGTSE+II AALYLKLRR+ D +
Sbjct: 385 LAFSTPGLEMATEEDSATSDVNYQDERLHIDCAVNTSPGTSELIIHAALYLKLRRHLDLE 444

Query: 362 DDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHP 421
           + G++K+AARI+DIL  GR G +++DS I+ LLKSN +LRD+IFVKPLH+ I  DTLDHP
Sbjct: 445 EGGQQKHAARIADILNPGRGGGLEKDSCIQLLLKSNCNLRDLIFVKPLHLRINLDTLDHP 504

Query: 422 KADNSKDIILTDSNMEVDVSL 442
           KADNSKDIILTDS +EV+VSL
Sbjct: 505 KADNSKDIILTDSAIEVNVSL 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469427|ref|XP_003604998.1| NHL repeat-containing protein [Medicago truncatula] gi|355506053|gb|AES87195.1| NHL repeat-containing protein [Medicago truncatula]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/445 (49%), Positives = 297/445 (66%), Gaps = 5/445 (1%)

Query: 2   RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGF 61
           RPA S+Y+  +DCLY +DSENHAIRRADM  R++ET+YP S    K   ++ WI+ KLG 
Sbjct: 342 RPAGSYYNATEDCLYFLDSENHAIRRADMEARLVETLYPIS-TDNKGGGIFNWILNKLGL 400

Query: 62  ERD--NDTKSEKLDPQSLIFPWHLMKSEDDNLLIIN-RSFETLWIMDLASGEIKEAVKGF 118
           E    N  KSE LDP+ L FPWHL+KS+DD+ + I  R F+TLW MD  SG++ +  +G 
Sbjct: 401 ETSVRNMEKSEVLDPKRLYFPWHLLKSDDDDTIYIIDRRFQTLWTMDSGSGKVDKIFEGS 460

Query: 119 SKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDI 178
            K+LEICG L+ + +    ++P D    + ++  +L  LP++  +SS    QNH+ +CD 
Sbjct: 461 PKILEICGQLIRQNLSTFDKIPCDQFQQKTNNVFALDGLPHSDRLSSLTTLQNHMFICDK 520

Query: 179 VGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLL 238
           V QRI+++N ESGVC +FQ SNF +LG PYW   PLE  YA   G   +  DH+Q+  LL
Sbjct: 521 VRQRILKVNIESGVCLDFQLSNFGLLGFPYWLNSPLETCYAGGNGLSDTAIDHLQQFDLL 580

Query: 239 PGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQLWYDE 298
           PG IDIK++VD+ +D E+VE L E CIWRQARG A+ +   +D   S++KVGVAQ WYDE
Sbjct: 581 PGNIDIKLSVDVHADIEVVEPLHESCIWRQARGAAAEITGMDD-PRSMDKVGVAQQWYDE 639

Query: 299 LDTLALSTPESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYP 358
           LD LA    + ES + ++    +   EDD + I+  V TSPGTSEVII A LY KLR+ P
Sbjct: 640 LDDLASPKADPESEVTEDDLDQNTAMEDDKIRINSCVGTSPGTSEVIIFAVLYCKLRKIP 699

Query: 359 DQQDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTL 418
           +  D  +EKYAARI D L   RSG  +RDS+  +LL+S  DLRD+IF K +H+ ++ +T 
Sbjct: 700 NSNDGNQEKYAARILDFLSSKRSGKRERDSWNAYLLQSKGDLRDLIFTKLVHIRVRINTS 759

Query: 419 DHPKADNSKDIILTDSNMEVDVSLN 443
           DHPKA+N +D ILTDS ++V+V LN
Sbjct: 760 DHPKAENDRDFILTDSTIKVNVLLN 784

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744354|emb|CBI37324.3| unnamed protein product [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/346 (59%), Positives = 265/346 (76%)

Query: 97  SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE 156
           SFETLWIM LASGEIKE V+G  KVLEICG ++MEK+ +L +MP DWL  Q+DS+ SL+ 
Sbjct: 351 SFETLWIMALASGEIKEVVRGIPKVLEICGEMIMEKLAVLNKMPHDWLQQQVDSNFSLEG 410

Query: 157 LPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLER 216
           +PYAGL+SS   FQ+ I++CD V QRI+RLN ESG  +N +FSNF ILGLPYWF+FPLER
Sbjct: 411 IPYAGLMSSLATFQDDIVICDTVAQRILRLNGESGDFTNLEFSNFGILGLPYWFSFPLER 470

Query: 217 VYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVV 276
           V AV    +G+  DH Q  S LPG+I+I++ V+IP DTELVE LQ+GCIWR ARG A+VV
Sbjct: 471 VCAVGNLIRGANADHFQSFSFLPGKINIQLMVEIPEDTELVEPLQDGCIWRLARGAAAVV 530

Query: 277 LRAEDVAGSLEKVGVAQLWYDELDTLALSTPESESNIEDETTTSDLRSEDDTVHIDCAVN 336
              ED+  S  KVGVAQ WYDELD LA  TPE ES+ E+E TT D   +++ V IDCAVN
Sbjct: 531 SGVEDLVASSAKVGVAQQWYDELDNLAFFTPEPESDAEEENTTLDTPFQEEKVRIDCAVN 590

Query: 337 TSPGTSEVIISAALYLKLRRYPDQQDDGREKYAARISDILKLGRSGAMQRDSFIRFLLKS 396
           TSPGTSEVI+ AALYLKL+R P+ Q+   EK AARI +IL+  +SG + R+S I+FL K 
Sbjct: 591 TSPGTSEVIVYAALYLKLKRNPNSQERNPEKNAARILNILEPEKSGKITRESCIQFLSKW 650

Query: 397 NQDLRDVIFVKPLHVSIQFDTLDHPKADNSKDIILTDSNMEVDVSL 442
           N+D+ D+IF+KPLHV I  ++L HPKA+N+K+ +LT+++++V+V L
Sbjct: 651 NEDVEDLIFMKPLHVRIGLESLSHPKAENAKETVLTETSIQVNVFL 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
TAIR|locus:2077597	774	emb1974 "AT3G07060" [Arabidops	0.990	0.568	0.514	9.2e-123

TAIR|locus:2077597 emb1974 "AT3G07060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 233/453 (51%), Positives = 320/453 (70%)

Query:     1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLG 60
             +RP  + Y + +DCLYIVDSENHAIRRA++  RVLETVYP   + KK   LW+WIMEK+G
Sbjct:   324 LRPTGTLYDEAEDCLYIVDSENHAIRRANINSRVLETVYPK--VIKKTGGLWSWIMEKMG 381

Query:    61 FERDNDT------KSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA 114
               +D+DT      KSE+ D +SL+FPWH++K +D++LL+IN+SF  LWI++ ASGEI+E 
Sbjct:   382 LGKDDDTTVDADTKSEEFDARSLLFPWHILKRDDESLLVINKSFSKLWIINFASGEIEEV 441

Query:   115 VKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHIL 174
             V+GFSK++EICG  + EK+ +L+ MP +WL  Q  +  S KE P A L+SS     + I+
Sbjct:   442 VEGFSKIIEICGQSITEKLSVLEHMPSNWLQQQTAAIASFKEQPSASLLSSFTKLGDDIV 501

Query:   175 LCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQR 234
             + DI  QR+++LNR+SG CS+ QFSN  ILGLPYW   PLERV+ +A G Q +   H Q 
Sbjct:   502 MTDIACQRVLKLNRDSGACSSIQFSNSGILGLPYWLFIPLERVFNLANGVQEAHLSHTQE 561

Query:   235 CSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAEDVAGSLEKVGVAQL 294
               LLPG+I I++N++IP  TELVE +QE CIWRQ RG  S    A       EK+GV+Q 
Sbjct:   562 LRLLPGKISIRLNIEIPPCTELVEPIQESCIWRQTRGAISEFSSAGSAVEPSEKIGVSQQ 621

Query:   295 WYDELDTLA--LSTPES-ESNIEDETTTSDL-RSEDDTVHIDCAVNTSPGTSEVIISAAL 350
             WYDELD+LA  ++ PE+ E   E++   S++ R ED  +HIDC V TSPG+SE+I+ AAL
Sbjct:   622 WYDELDSLAKEIANPEAAEEEEEEDVNPSEVDREEDGRIHIDCPVKTSPGSSELIVYAAL 681

Query:   351 YLKLRRYPDQQDDGREKYAARISDILKLGRS-GAMQRDSFIRFLLKSNQDLRDVIFVKPL 409
             YL+L R  + +   +E+ A +I+ ILK  R+   M+ D F+  L KS ++LRD++F+KP+
Sbjct:   682 YLRLARNEETESATQEELARKIAKILKPVRNITTMKEDLFVNLLSKSKRELRDIVFIKPM 741

Query:   410 HVSIQFDTLDHPKADNSKDIILTDSNMEVDVSL 442
             HV I+ D+ DHPKADNS+D+ILTDS++EVDVSL
Sbjct:   742 HVRIRLDSKDHPKADNSRDVILTDSSVEVDVSL 774


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      444       444   0.00090  118 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  285 KB (2148 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.83u 0.21s 37.04t   Elapsed:  00:00:02
  Total cpu time:  36.83u 0.21s 37.04t   Elapsed:  00:00:02
  Start:  Tue May 21 00:56:50 2013   End:  Tue May 21 00:56:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	444
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.85
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.82
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.22
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.67
COG3391	381	Uncharacterized conserved protein [Function unknow	98.49
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.39
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.28
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.28
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.27
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.25
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.18
PRK11028	330	6-phosphogluconolactonase; Provisional	98.14
COG3391	381	Uncharacterized conserved protein [Function unknow	98.13
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.08
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.07
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.01
PRK11028	330	6-phosphogluconolactonase; Provisional	97.87
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.67
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.6
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.48
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.41
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.36
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.27
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.23
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.87
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.55
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.54
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.51
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.08
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	95.99
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.85
KOG1214	1289	consensus Nidogen and related basement membrane pr	95.79
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.69
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.68
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	95.54
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.47
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.24
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.11
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.03
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	94.84
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	94.84
PRK04792	448	tolB translocation protein TolB; Provisional	94.65
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.35
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	94.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.03
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.88
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.84
PRK04922	433	tolB translocation protein TolB; Provisional	93.84
PRK03629	429	tolB translocation protein TolB; Provisional	93.73
PRK04792	448	tolB translocation protein TolB; Provisional	93.33
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.16
PRK02889	427	tolB translocation protein TolB; Provisional	93.1
PRK01742	429	tolB translocation protein TolB; Provisional	93.06
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.97
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.9
KOG1214	1289	consensus Nidogen and related basement membrane pr	92.81
PRK03629	429	tolB translocation protein TolB; Provisional	92.78
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	92.56
PRK04922	433	tolB translocation protein TolB; Provisional	92.56
PRK00178	430	tolB translocation protein TolB; Provisional	92.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.38
PRK04043	419	tolB translocation protein TolB; Provisional	92.31
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	92.24
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.12
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	92.04
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	92.0
PRK05137	435	tolB translocation protein TolB; Provisional	91.8
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.68
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.58
PRK00178	430	tolB translocation protein TolB; Provisional	91.25
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	91.23
COG4946	668	Uncharacterized protein related to the periplasmic	91.15
PRK05137	435	tolB translocation protein TolB; Provisional	91.05
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	90.7
PRK02888	635	nitrous-oxide reductase; Validated	90.42
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	90.35
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.44
KOG0266	456	consensus WD40 repeat-containing protein [General	88.83
PRK02889	427	tolB translocation protein TolB; Provisional	88.52
PRK01029	428	tolB translocation protein TolB; Provisional	88.11
COG3211	616	PhoX Predicted phosphatase [General function predi	87.27
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.86
PRK01742	429	tolB translocation protein TolB; Provisional	86.72
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	86.69
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	86.55
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.44
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.43
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	84.87
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	83.64
PRK04043	419	tolB translocation protein TolB; Provisional	82.52
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	82.35
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	82.08
PTZ00421	493	coronin; Provisional	82.04
PTZ00420	568	coronin; Provisional	81.19

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.85  E-value=1.5e-20  Score=213.34  Aligned_cols=198  Identities=16%  Similarity=0.185  Sum_probs=142.4

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      ++|+||++|++++.|||||++||+||+||+.++.|+|++|+|..        +.....++.+...          .|++|
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~--------g~~~~gg~~~~~~----------~ln~P  685 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTK--------GSDYQGGKKGTSQ----------VLNSP  685 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc--------cCCCCCChhhhHh----------hcCCC
Confidence            47999999998889999999999999999999999999999754        1110111112222          39999


Q ss_pred             ceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      |+|++++ +|.|||+|+++|+||++|+.+|.+.++++.+.. ....|..                     .     ..+.
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~-~~~~g~~---------------------~-----~~~~  738 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE-RNLNGSS---------------------G-----TSTS  738 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc-ccCCCCc---------------------c-----cccc
Confidence            9999998 589999999999999999999999888752110 0000000                     0     0001


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeee------------ccccccCCceeeeeccceeeecc--cc
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQF------------SNFAILGLPYWFAFPLERVYAVA--GG  223 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~f------------sg~g~lg~P~~l~~PL~~v~~~~--~~  223 (444)
                      ...|.+++.  .++.|||||+++|+||++|+++|.++.+..            ...+..+....|+.|...+++..  .+
T Consensus       739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY  818 (1057)
T PLN02919        739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY  818 (1057)
T ss_pred             ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE
Confidence            112445443  345699999999999999999987665431            11112334467888998887653  56


Q ss_pred             cCCcccceeeeeecCCCeee
Q 013362          224 HQGSWTDHIQRCSLLPGRID  243 (444)
Q Consensus       224 ~~g~~~~~i~~v~~~pGri~  243 (444)
                      ++++.+|+|++++...|++.
T Consensus       819 VADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        819 VADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             EEECCCCEEEEEECCCCeEE
Confidence            79999999999999888765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.82  E-value=1.1e-18  Score=198.23  Aligned_cols=233  Identities=13%  Similarity=0.119  Sum_probs=150.6

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .+|.||+++++++.|||||++||+||++|+.++.+.+++|....  .+..++.|+ +.+|.+..+.          |++|
T Consensus       740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~--~~~~l~~fG-~~dG~g~~~~----------l~~P  806 (1057)
T PLN02919        740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT--FSDNLFKFG-DHDGVGSEVL----------LQHP  806 (1057)
T ss_pred             cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc--cCccccccc-CCCCchhhhh----------ccCC
Confidence            36999999999989999999999999999999888888764321  111122333 3345555555          9999


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      .+|+++++|+|||||++||+|++||+.++.+.++++.+.... .+|..                      ..+     ..
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~-~dG~~----------------------~~a-----~l  858 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF-KDGKA----------------------LKA-----QL  858 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC-CCCcc----------------------ccc-----cc
Confidence            999999999999999999999999999999999986221100 00100                      000     01


Q ss_pred             cccccccc-cCCeEEEEeCCCCeEEEEeCCCCeE---EEeeeccccccCCceeeeeccceeeecccccCCcccceeeeee
Q 013362          161 GLISSSIA-FQNHILLCDIVGQRIMRLNRESGVC---SNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCS  236 (444)
Q Consensus       161 ~~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~v---ST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~  236 (444)
                      ..|.+++. .++.|||+|+.||+||++|++++.+   .++.+.+.....   ...-...+++.- .. .++..-.+..+.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~-~~-~~~~~~~~~~~~  933 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPR---PKSKSLKRLRRR-SS-ADTQVIKVDGVT  933 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEECCCCccceeEeeccccccCCC---Ccccchhhhhhc-cc-ccCceeecCCcc
Confidence            12445443 3568999999999999999999976   355555543333   111112233222 11 344444444455


Q ss_pred             cCCCeeeEEEeeeCCCCcccccccccceeeeeeccceeeeecccc
Q 013362          237 LLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAED  281 (444)
Q Consensus       237 ~~pGri~i~v~v~~P~~~el~~p~~e~ciwrq~rg~~~~~~~~~~  281 (444)
                      ..+|  +|++.+.+|+|+.+.+-+.-.-.-...--.+.+|--.+|
T Consensus       934 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  976 (1057)
T PLN02919        934 SLEG--DLQLKISLPPGYHFSKEARSKFEVEVEPENAVDIDPDEG  976 (1057)
T ss_pred             cccc--eEEEEEECCCCCccCcCCCceeEEEeccCCceEecCCCc
Confidence            5556  888999999999998765543222222124444444444

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.22  E-value=9.1e-11  Score=132.78  Aligned_cols=98  Identities=18%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEC-----CCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADM-----GRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl-----~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      +=||++|-.+.|||.|++.|.|-||.-     ..+.-+.|||+|++  |=.+-.  ..|++|.|.+|.          |+
T Consensus       410 Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~--Clp~de--sCGDGalA~dA~----------L~  475 (1899)
T KOG4659|consen  410 YYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEV--CLPADE--SCGDGALAQDAQ----------LI  475 (1899)
T ss_pred             eEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcC--cccccc--ccCcchhcccce----------ec
Confidence            458899988899999999999999853     25678999999986  321111  136677777777          99


Q ss_pred             CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCC
Q 013362           79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGF  118 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~  118 (444)
                      +|.||++|.+|.||+||.-  .||+||. +|.|+|+.|..
T Consensus       476 ~PkGIa~dk~g~lYfaD~t--~IR~iD~-~giIstlig~~  512 (1899)
T KOG4659|consen  476 FPKGIAFDKMGNLYFADGT--RIRVIDT-TGIISTLIGTT  512 (1899)
T ss_pred             cCCceeEccCCcEEEeccc--EEEEecc-CceEEEeccCC
Confidence            9999999999999999976  5999995 79999998633

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.06  E-value=2.6e-09  Score=100.98  Aligned_cols=197  Identities=16%  Similarity=0.199  Sum_probs=118.8

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCC---CcCc-cCCcchhhhhcccCcccc--cCcccc----CC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTS---GISK-KNNSLWAWIMEKLGFERD--NDTKSE----KL   72 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG---~~~~-~~~~l~g~~~~~~G~a~~--a~~~~~----~~   72 (444)
                      |-|++||+..+.||++|..+++|.++++.++..+++.-.+   .... ..+.++  .....|...-  ...+.+    .+
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~--v~~~~~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLY--VADSGGIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEE--EEETTCEEEEETTTTEEEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEE--EEEcCceEEEecCCCcEEEEeecc
Confidence            6799999867799999999999999999999887754221   1111 112121  1111222110  000111    11


Q ss_pred             -CCCCCCCcceeEEcCCCeEEEEeCCC--------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccc
Q 013362           73 -DPQSLIFPWHLMKSEDDNLLIINRSF--------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDW  143 (444)
Q Consensus        73 -~~~~Ln~P~gL~~d~dG~LYIADagn--------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~  143 (444)
                       ....++.|-+++++++|+||++|.+.        .+|++++++ |+++.+..+...                       
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-----------------------  135 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-----------------------  135 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-----------------------
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-----------------------
Confidence             22269999999999999999999977        569999998 888877643211                       


Q ss_pred             ccccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCC--CCeEEEee-eccc-cccCCceeeeeccceeee
Q 013362          144 LLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE--SGVCSNFQ-FSNF-AILGLPYWFAFPLERVYA  219 (444)
Q Consensus       144 ~~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~--tG~vST~~-fsg~-g~lg~P~~l~~PL~~v~~  219 (444)
                                +.|+.+       ...++.||++|+.+++|.+++++  ++.++... |... +..      ..|-+.+++
T Consensus       136 ----------pNGi~~-------s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------g~pDG~~vD  192 (246)
T PF08450_consen  136 ----------PNGIAF-------SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP------GYPDGLAVD  192 (246)
T ss_dssp             ----------EEEEEE-------ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS------CEEEEEEEB
T ss_pred             ----------ccceEE-------CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC------cCCCcceEc
Confidence                      112222       23466899999999999999996  44344322 2111 112      334444443


Q ss_pred             -ccccc-CCcccceeeeeecCCCeeeEEEeeeCC
Q 013362          220 -VAGGH-QGSWTDHIQRCSLLPGRIDIKVNVDIP  251 (444)
Q Consensus       220 -~~~~~-~g~~~~~i~~v~~~pGri~i~v~v~~P  251 (444)
                       .|+.+ +.-...+|++++.- |++.  -.+.+|
T Consensus       193 ~~G~l~va~~~~~~I~~~~p~-G~~~--~~i~~p  223 (246)
T PF08450_consen  193 SDGNLWVADWGGGRIVVFDPD-GKLL--REIELP  223 (246)
T ss_dssp             TTS-EEEEEETTTEEEEEETT-SCEE--EEEE-S
T ss_pred             CCCCEEEEEcCCCEEEEECCC-ccEE--EEEcCC
Confidence             33332 43456789999887 8754  344555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.67  E-value=1.5e-07  Score=88.95  Aligned_cols=83  Identities=22%  Similarity=0.243  Sum_probs=62.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCC--CeEE---EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR--RVLE---TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS   76 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t--g~Vt---TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~   76 (444)
                      .|.||+++++++.|||+|+.+++|.++++..  +.++   +++.-.                       .         .
T Consensus       135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------------------~---------~  182 (246)
T PF08450_consen  135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-----------------------G---------G  182 (246)
T ss_dssp             SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-----------------------S---------S
T ss_pred             cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC-----------------------C---------C
Confidence            5999999999999999999999999999852  2222   111100                       0         0


Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEE-eecC
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKE-AVKG  117 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~T-iagG  117 (444)
                      ...|-++++|.+|+||||+.++++|+++|++ |++.. +.-+
T Consensus       183 ~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  183 PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence            2458899999999999999999999999998 76544 4433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=1.4e-05  Score=82.03  Aligned_cols=210  Identities=16%  Similarity=0.179  Sum_probs=136.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|+|+++++.+..+|+.+..++.|+.||..+.++..-.+.|                                   ..|.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-----------------------------------~~P~  119 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-----------------------------------LGPV  119 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-----------------------------------cCCc
Confidence            58999999999999999999999999995554443332221                                   1588


Q ss_pred             eeEEcCCC-eEEEEeC--CCCEEEEEECCCCcEEEee-cCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           82 HLMKSEDD-NLLIINR--SFETLWIMDLASGEIKEAV-KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        82 gL~~d~dG-~LYIADa--gnh~IrkIDl~tG~I~Tia-gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      +++++.++ .+||+|.  +++++.++|..++.+..-. -|.                                  .+.|+
T Consensus       120 ~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~----------------------------------~P~~~  165 (381)
T COG3391         120 GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN----------------------------------TPTGV  165 (381)
T ss_pred             eEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC----------------------------------CcceE
Confidence            99999885 8999999  5899999999988765432 111                                  01122


Q ss_pred             CcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeec--cccccCCceeeee-ccce-eeecccccCCcc--cce
Q 013362          158 PYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFS--NFAILGLPYWFAF-PLER-VYAVAGGHQGSW--TDH  231 (444)
Q Consensus       158 p~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fs--g~g~lg~P~~l~~-PL~~-v~~~~~~~~g~~--~~~  231 (444)
                      +       +...++.+|++|..+++|-.+|.++..+.. ...  ..+.+..|+-..+ |-+. +|     .....  .-.
T Consensus       166 a-------~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~y-----V~~~~~~~~~  232 (381)
T COG3391         166 A-------VDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVY-----VANDGSGSNN  232 (381)
T ss_pred             E-------ECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEE-----EEeccCCCce
Confidence            2       123567799999999999999988887775 432  3556777766665 2111 22     12222  347


Q ss_pred             eeeeecCCCeeeEEEeeeCCCCcc-----cccccccceeeeee---ccceeeeeccccccCccchhhhhhhhhhh
Q 013362          232 IQRCSLLPGRIDIKVNVDIPSDTE-----LVESLQEGCIWRQA---RGTASVVLRAEDVAGSLEKVGVAQLWYDE  298 (444)
Q Consensus       232 i~~v~~~pGri~i~v~v~~P~~~e-----l~~p~~e~ciwrq~---rg~~~~~~~~~~~~~~~~kvg~aq~wyde  298 (444)
                      +.+++..++.+.-.   +.|.+..     .+.|.  +=.|+=+   -+....+.++...+.+.-.+|....|+..
T Consensus       233 v~~id~~~~~v~~~---~~~~~~~~~~~v~~~p~--g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~  302 (381)
T COG3391         233 VLKIDTATGNVTAT---DLPVGSGAPRGVAVDPA--GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV  302 (381)
T ss_pred             EEEEeCCCceEEEe---ccccccCCCCceeECCC--CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence            88888888877643   2343332     22232  1112211   46677777777776666666666555443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.39  E-value=5.1e-07  Score=60.67  Aligned_cols=28  Identities=11%  Similarity=0.321  Sum_probs=26.4

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEE
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIM  104 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkI  104 (444)
                      |+.|+||+++++|+|||||++||+|+++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            6789999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.28  E-value=2.9e-06  Score=97.47  Aligned_cols=152  Identities=9%  Similarity=0.076  Sum_probs=100.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccC-CcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKN-NSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~-~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|..+|++|-.+.|||-|+  |.|-+|+. .+.|..++|....  |- .++-.+.   .-.+..+.          |-.|
T Consensus       534 WPT~LaV~Pmdnsl~Vld~--nvvlrit~-~~rV~Ii~GrP~h--C~~a~~t~~~---skla~H~t----------l~~~  595 (1899)
T KOG4659|consen  534 WPTSLAVDPMDNSLLVLDT--NVVLRITV-VHRVRIILGRPTH--CDLANATSSA---SKLADHRT----------LLIQ  595 (1899)
T ss_pred             cccceeecCCCCeEEEeec--ceEEEEcc-CccEEEEcCCccc--cccCCCchhh---hhhhhhhh----------hhhh
Confidence            5999999999999999995  99999985 6778899987422  10 0000111   01222333          8889


Q ss_pred             ceeEEcCCCeEEEEeCCC---CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccc-ccccccccC
Q 013362           81 WHLMKSEDDNLLIINRSF---ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQ-IDSSCSLKE  156 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagn---h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~-~~~~~~~~G  156 (444)
                      .+|++..+|.||||.+-.   ||||++.. .|+|..+||+-            ++|.|..+.+.+-++.. ..+..+   
T Consensus       596 r~Iavg~~G~lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~------------S~C~C~~~~~cdcfs~~~~~At~A---  659 (1899)
T KOG4659|consen  596 RDIAVGTDGALYVAESDGRRINRVRKLST-DGTISILAGAK------------SPCSCDVAACCDCFSLRDVAATQA---  659 (1899)
T ss_pred             hceeecCCceEEEEeccchhhhheEEecc-CceEEEecCCC------------CCCCcccccCCccccccchhhhcc---
Confidence            999999999999999865   67788865 58999998642            23445544444433321 001111   


Q ss_pred             CCcccccccccc-cCCeEEEEeCCCCeEEEEeCC
Q 013362          157 LPYAGLISSSIA-FQNHILLCDIVGQRIMRLNRE  189 (444)
Q Consensus       157 ip~a~~~Sgla~-~~~~LyIADT~nhRIRkvdl~  189 (444)
                        ....|++||. ..+++||||..|.|||+|..+
T Consensus       660 --~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~  691 (1899)
T KOG4659|consen  660 --KLNSPYALAVSPDGDVIIADSGNSRIRKVSAR  691 (1899)
T ss_pred             --ccCCcceEEECCCCcEEEecCCchhhhhhhhc
Confidence              1112455553 578999999999999998654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.28  E-value=1.2e-05  Score=80.98  Aligned_cols=121  Identities=17%  Similarity=0.161  Sum_probs=91.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEec-cCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|.-++-+++| .+++-+...|+|=+.|+.+|+|.|++ |+|                                   .+|
T Consensus        63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~G-----------------------------------a~P  106 (353)
T COG4257          63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSG-----------------------------------ASP  106 (353)
T ss_pred             CccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCC-----------------------------------CCC
Confidence            47788888888 69999999999999999999999986 443                                   248


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      .+|.+.+||..||+|+++ .|+|+|+++++++++--....                                     +.+
T Consensus       107 hgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~-------------------------------------a~~  148 (353)
T COG4257         107 HGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH-------------------------------------ADA  148 (353)
T ss_pred             ceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccccc-------------------------------------CCC
Confidence            899999999999999999 999999999999988632110                                     000


Q ss_pred             cccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362          161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~  197 (444)
                      .+-+-+.+..++||+.-..+ --=++|+.++.+++|-
T Consensus       149 nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfp  184 (353)
T COG4257         149 NLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFP  184 (353)
T ss_pred             cccceeeCCCccEEEeeccc-cceecCcccCceeeec
Confidence            00011234567788876633 2228999999999983

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.27  E-value=0.00014  Score=73.29  Aligned_cols=182  Identities=19%  Similarity=0.230  Sum_probs=112.5

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCe--EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRV--LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~--VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      ||+.+.++++|+.|||+|-++.+|+.+++....  ++-..-. ..                              ..=..
T Consensus       145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~------------------------------~~G~G  193 (345)
T PF10282_consen  145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-KV------------------------------PPGSG  193 (345)
T ss_dssp             CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-EC------------------------------STTSS
T ss_pred             cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-cc------------------------------ccCCC
Confidence            789999999999999999999999999986543  3321100 00                              00345


Q ss_pred             cceeEEcCCC-eEEEEeCCCCEEEEEECC--CCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362           80 PWHLMKSEDD-NLLIINRSFETLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE  156 (444)
Q Consensus        80 P~gL~~d~dG-~LYIADagnh~IrkIDl~--tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G  156 (444)
                      |.+++++++| .+|+++...++|..++..  +|.++.+.. .+.               +   |.++           .+
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~-~~~---------------~---~~~~-----------~~  243 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT-IST---------------L---PEGF-----------TG  243 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EES---------------C---ETTS-----------CS
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE-eee---------------c---cccc-----------cc
Confidence            8999999985 699999999999999988  676554431 000               0   0000           01


Q ss_pred             CCccccccc--ccccCCeEEEEeCCCCeEEEEeC--CCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccce
Q 013362          157 LPYAGLISS--SIAFQNHILLCDIVGQRIMRLNR--ESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDH  231 (444)
Q Consensus       157 ip~a~~~Sg--la~~~~~LyIADT~nhRIRkvdl--~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~  231 (444)
                      .   ..++.  +..+++.||++......|..+++  ++|.++.++.-..+ -..|-.|.+ |-++..-+    +.+..+.
T Consensus       244 ~---~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~V----a~~~s~~  315 (345)
T PF10282_consen  244 E---NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYV----ANQDSNT  315 (345)
T ss_dssp             S---SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEE----EETTTTE
T ss_pred             c---CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEE----EecCCCe
Confidence            0   01222  23457789999999999888887  57888777532221 123666665 54433222    3333344


Q ss_pred             ee--eeecCCCeeeEEEe-eeCCC
Q 013362          232 IQ--RCSLLPGRIDIKVN-VDIPS  252 (444)
Q Consensus       232 i~--~v~~~pGri~i~v~-v~~P~  252 (444)
                      |.  +++...|++..... +.+|.
T Consensus       316 v~vf~~d~~tG~l~~~~~~~~~~~  339 (345)
T PF10282_consen  316 VSVFDIDPDTGKLTPVGSSVPIPS  339 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSS
T ss_pred             EEEEEEeCCCCcEEEecccccCCC
Confidence            54  44668898887764 56553

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.25  E-value=5.4e-06  Score=85.85  Aligned_cols=135  Identities=15%  Similarity=0.149  Sum_probs=90.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      ||.||+++..++.|||||.+ --+-+|++..|.-+-+++..+.                              +.+.+.-
T Consensus       116 RPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G------------------------------~~~kf~N  164 (376)
T KOG1520|consen  116 RPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEG------------------------------KPFKFLN  164 (376)
T ss_pred             CcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccC------------------------------eeeeecC
Confidence            79999999999899999997 4577888887775555554211                              1166677


Q ss_pred             eeEEcCCCeEEEEeCCC-----------------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccc
Q 013362           82 HLMKSEDDNLLIINRSF-----------------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWL  144 (444)
Q Consensus        82 gL~~d~dG~LYIADagn-----------------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~  144 (444)
                      ++.++++|.+|+.|++.                 +|+.++|+.|.+.+.+.                             
T Consensus       165 ~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl-----------------------------  215 (376)
T KOG1520|consen  165 DLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL-----------------------------  215 (376)
T ss_pred             ceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh-----------------------------
Confidence            88899999999999865                 33444444333332222                             


Q ss_pred             cccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCc
Q 013362          145 LHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLP  207 (444)
Q Consensus       145 ~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P  207 (444)
                                +++.|+..++ |..++..+.+|.+-..||+|+-+++..+.|-..=-.|..|+|
T Consensus       216 ----------d~L~F~NGla-LS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~P  267 (376)
T KOG1520|consen  216 ----------DGLYFPNGLA-LSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYP  267 (376)
T ss_pred             ----------hccccccccc-CCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCC
Confidence                      1222211111 335677899999999999999999888866421112455555

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.18  E-value=3e-06  Score=56.90  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEE
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRA   28 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkI   28 (444)
                      +.|.||+++++| .|||||++||+|++.
T Consensus         2 ~~P~gvav~~~g-~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDG-NIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence            479999999665 899999999999974

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.14  E-value=0.0001  Score=72.49  Aligned_cols=129  Identities=8%  Similarity=0.031  Sum_probs=83.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.+|+++++++.||++....+.|..+++. +|.+.+....  .                    ..          ...|
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--~--------------------~~----------~~~~  128 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI--I--------------------EG----------LEGC  128 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee--c--------------------cC----------CCcc
Confidence            589999999999999999888999999874 2322211110  0                    00          3468


Q ss_pred             ceeEEcCCC-eEEEEeCCCCEEEEEECCC-CcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           81 WHLMKSEDD-NLLIINRSFETLWIMDLAS-GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        81 ~gL~~d~dG-~LYIADagnh~IrkIDl~t-G~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      .+++++++| .||+++.+.++|+.+|+.+ |.+.....-....                           ..+.++.++.
T Consensus       129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~---------------------------~~g~~p~~~~  181 (330)
T PRK11028        129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT---------------------------VEGAGPRHMV  181 (330)
T ss_pred             cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec---------------------------CCCCCCceEE
Confidence            888888875 6999999999999999976 4443111000000                           0001111111


Q ss_pred             cccccccccccCCeEEEEeCCCCeEEEEeCC--CCeEEEe
Q 013362          159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRE--SGVCSNF  196 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~--tG~vST~  196 (444)
                             +...+..||+++...+.|..++++  +|..+.+
T Consensus       182 -------~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        182 -------FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             -------ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence                   234567899999999999999987  4555444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.00011  Score=75.57  Aligned_cols=125  Identities=14%  Similarity=0.205  Sum_probs=91.3

Q ss_pred             CcceEEEecCCCEEEEEeC--CCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDS--ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADT--eNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|++++++++++.+||+|.  .|+.|-+||..++.+..-...|                                   ..
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-----------------------------------~~  161 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-----------------------------------NT  161 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-----------------------------------CC
Confidence            6999999999999999999  5899999998888765542222                                   14


Q ss_pred             cceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           80 PWHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      |.+++++++|+ +|++|...+.|-.+|..+-.+.+ .......    +                       ....+.++.
T Consensus       162 P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~----~-----------------------~~~~P~~i~  213 (381)
T COG3391         162 PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV----G-----------------------VGTGPAGIA  213 (381)
T ss_pred             cceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc----c-----------------------cCCCCceEE
Confidence            67899999987 99999999999999987666654 2110000    0                       011111111


Q ss_pred             cccccccccccCCeEEEEeCCC--CeEEEEeCCCCeEEEe
Q 013362          159 YAGLISSSIAFQNHILLCDIVG--QRIMRLNRESGVCSNF  196 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~n--hRIRkvdl~tG~vST~  196 (444)
                             +...++.+|+++..+  .+|.++|..++.+.-.
T Consensus       214 -------v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         214 -------VDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             -------ECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence                   234567899999998  7999999999988764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.08  E-value=0.00012  Score=73.76  Aligned_cols=145  Identities=16%  Similarity=0.216  Sum_probs=94.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC--CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|..++++++++.+||+...++.|-.+++.  +|..+.+.-....            .. +.   ..          -+.
T Consensus       193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~------------~~-~~---~~----------~~~  246 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL------------PE-GF---TG----------ENA  246 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC------------ET-TS---CS----------SSS
T ss_pred             CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec------------cc-cc---cc----------cCC
Confidence            588999999999999999999999999987  6655443322111            00 00   01          357


Q ss_pred             cceeEEcCCC-eEEEEeCCCCEEEEEEC--CCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362           80 PWHLMKSEDD-NLLIINRSFETLWIMDL--ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE  156 (444)
Q Consensus        80 P~gL~~d~dG-~LYIADagnh~IrkIDl--~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G  156 (444)
                      |.+|++++|| .||+++++.+.|..+++  .+|.++.+.. .+    +.|.                         .|.+
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~----~~G~-------------------------~Pr~  296 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VP----TGGK-------------------------FPRH  296 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EE----ESSS-------------------------SEEE
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-Ee----CCCC-------------------------CccE
Confidence            8999999886 59999999999998887  5688875532 00    0010                         0111


Q ss_pred             CCcccccccccccCCeEEEEeCCCCeEEEE--eCCCCeEEEeeeccccccCCceeee
Q 013362          157 LPYAGLISSSIAFQNHILLCDIVGQRIMRL--NRESGVCSNFQFSNFAILGLPYWFA  211 (444)
Q Consensus       157 ip~a~~~Sgla~~~~~LyIADT~nhRIRkv--dl~tG~vST~~fsg~g~lg~P~~l~  211 (444)
                      +.       +...++.||++....+.|..+  |.++|.++.+.-.  -.+.-|+++.
T Consensus       297 ~~-------~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~--~~~~~p~ci~  344 (345)
T PF10282_consen  297 FA-------FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSS--VPIPSPVCIV  344 (345)
T ss_dssp             EE-------E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE--EESSSEEEEE
T ss_pred             EE-------EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccc--ccCCCCEEEe
Confidence            11       234678899999999998865  5679998876421  2344555543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.07  E-value=9.3e-05  Score=74.74  Aligned_cols=174  Identities=13%  Similarity=0.110  Sum_probs=115.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCc---------cCCcchhhhhcccCcc---cccCccc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISK---------KNNSLWAWIMEKLGFE---RDNDTKS   69 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~---------~~~~l~g~~~~~~G~a---~~a~~~~   69 (444)
                      +|+||..+++| .++|+|++| +|+|+|.++..|+++-=+++...         +-|-|| |. +..|..   ..++.-.
T Consensus       105 ~Phgiv~gpdg-~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lW-Ft-~q~G~yGrLdPa~~~i  180 (353)
T COG4257         105 SPHGIVVGPDG-SAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLW-FT-GQIGAYGRLDPARNVI  180 (353)
T ss_pred             CCceEEECCCC-CeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEE-Ee-eccccceecCcccCce
Confidence            79999999998 599999999 99999999999998753221100         112233 11 222221   2233335


Q ss_pred             cCCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccc
Q 013362           70 EKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQID  149 (444)
Q Consensus        70 ~~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~  149 (444)
                      .+|...+=-.|.||+...+|.+|+|....+.|-+||+.+|.-+.+--  +..+                           
T Consensus       181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~--P~~~---------------------------  231 (353)
T COG4257         181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ--PNAL---------------------------  231 (353)
T ss_pred             eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecC--CCcc---------------------------
Confidence            67776666779999999999999999999999999999885544432  1110                           


Q ss_pred             ccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeee
Q 013362          150 SSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYA  219 (444)
Q Consensus       150 ~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~  219 (444)
                       ..+.      -.+.  ...+++++|++.++.++-++|+++..-....+.+.+  .-||...+ -..||+-
T Consensus       232 -~~gs------Rriw--sdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~  291 (353)
T COG4257         232 -KAGS------RRIW--SDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWL  291 (353)
T ss_pred             -cccc------cccc--cCccCcEEEeccCCceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEe
Confidence             0000      0111  356899999999999999999987775555444433  23344333 3566663

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.01  E-value=9.1e-05  Score=75.03  Aligned_cols=145  Identities=17%  Similarity=0.181  Sum_probs=93.8

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCc-----CccCCcchhhhhcccCcc-----ccc--Ccccc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGI-----SKKNNSLWAWIMEKLGFE-----RDN--DTKSE   70 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~-----~~~~~~l~g~~~~~~G~a-----~~a--~~~~~   70 (444)
                      ..|-.|+++++.||++|..+.+|.+.++.+|..+++.=.+..     ..+++-|+.-   +.|..     ...  ..-.+
T Consensus        27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~---~~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC---EHGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE---ccccEEEeccCCceeEEecc
Confidence            346678888889999999999999999998877776522211     1111112210   11111     000  11133


Q ss_pred             CCCCCCCCCcceeEEcCCCeEEEEeCCC-----------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcC
Q 013362           71 KLDPQSLIFPWHLMKSEDDNLLIINRSF-----------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQM  139 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~dG~LYIADagn-----------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~  139 (444)
                      ..+..+++.|-++.++++|.+|+.|.++           ..++++|+. |.+..+..+.  +                  
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~--~------------------  162 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDD--L------------------  162 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCc--E------------------
Confidence            4566678999999999999999999982           458888884 4444454220  0                  


Q ss_pred             CcccccccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCC
Q 013362          140 PQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRES  190 (444)
Q Consensus       140 ~~~~~~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t  190 (444)
                                  ..+.|+++       ..++..||++||..+||.++++.-
T Consensus       163 ------------~~~NGla~-------SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         163 ------------TIPNGLAF-------SPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             ------------EecCceEE-------CCCCCEEEEEeCCCCeEEEEecCc
Confidence                        01113333       245668999999999999998763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.87  E-value=0.0007  Score=66.62  Aligned_cols=82  Identities=16%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCC-CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR-RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t-g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|++++++++++.|||++.+.+.|+.+|+.+ |.+.........                   ...          =..|
T Consensus       127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~-------------------~~~----------g~~p  177 (330)
T PRK11028        127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT-------------------TVE----------GAGP  177 (330)
T ss_pred             cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee-------------------cCC----------CCCC
Confidence            6899999999999999999999999999864 333211000000                   000          1347


Q ss_pred             ceeEEcCCC-eEEEEeCCCCEEEEEECC--CCcEE
Q 013362           81 WHLMKSEDD-NLLIINRSFETLWIMDLA--SGEIK  112 (444)
Q Consensus        81 ~gL~~d~dG-~LYIADagnh~IrkIDl~--tG~I~  112 (444)
                      .+++++++| .||+++.+.++|+.++.+  +|+++
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~  212 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE  212 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence            899999885 599999999999999886  45554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.85  E-value=0.00052  Score=70.02  Aligned_cols=70  Identities=13%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCC------------eEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccc
Q 013362            2 RPAASFYHKDDDCLYIVDSENH------------AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKS   69 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNH------------aIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~   69 (444)
                      +|.+|++|++| +|||++..|.            +|.+++-.++       .                  |.+.    +.
T Consensus        15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg-------d------------------G~~d----~~   64 (367)
T TIGR02604        15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADG-------D------------------GKYD----KS   64 (367)
T ss_pred             CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC-------C------------------CCcc----ee
Confidence            69999999988 6999997553            4444432211       1                  1110    11


Q ss_pred             cCCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEE
Q 013362           70 EKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD  105 (444)
Q Consensus        70 ~~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkID  105 (444)
                      ..|-+. |..|.++++..+| |||++..  +|+++.
T Consensus        65 ~vfa~~-l~~p~Gi~~~~~G-lyV~~~~--~i~~~~   96 (367)
T TIGR02604        65 NVFAEE-LSMVTGLAVAVGG-VYVATPP--DILFLR   96 (367)
T ss_pred             EEeecC-CCCccceeEecCC-EEEeCCC--eEEEEe
Confidence            123222 8899999999878 9999754  699884

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.67  E-value=0.0032  Score=58.56  Aligned_cols=129  Identities=12%  Similarity=0.148  Sum_probs=85.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.++++++++..||++-...+.|+.+|+.++.+ .++-... .               +.  ...          -..|
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~---------------~~--~~~----------~~~~  209 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI-P---------------GV--HPE----------AVQP  209 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc-c---------------cc--ccc----------cCCc
Confidence            4778889989888888866678899999987754 3332111 0               00  000          2247


Q ss_pred             ceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      .+++++++|. +|++...+++|+++|+.++++.........+.                                 .+. 
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---------------------------------~~~-  255 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVW---------------------------------QLA-  255 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcc---------------------------------eEE-
Confidence            7888888765 69999989999999999988754331000000                                 000 


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeee
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQF  198 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~f  198 (444)
                            +...+..||++......|+.+|++++.+ .+|++
T Consensus       256 ------~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       256 ------FTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             ------ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence                  1234567888887788999999999995 77764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.60  E-value=0.00082  Score=68.19  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.||||+++|..||+|||..++|.++++..   .    +|...++.    .+...+.                .=-.|=
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~---~----~g~~~~~~----~~~~~~~----------------~~G~PD  216 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDP---A----TGPIGGRR----GFVDFDE----------------EPGLPD  216 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCc---c----cCccCCcc----eEEEccC----------------CCCCCC
Confidence            4889999999999999999999999999864   1    11110000    0000000                123578


Q ss_pred             eeEEcCCCeEEEEeCCC-CEEEEEECCCCcE-EEee
Q 013362           82 HLMKSEDDNLLIINRSF-ETLWIMDLASGEI-KEAV  115 (444)
Q Consensus        82 gL~~d~dG~LYIADagn-h~IrkIDl~tG~I-~Tia  115 (444)
                      ++++|.+|+||++-..+ .+|-+++++ |+. ..+.
T Consensus       217 G~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~  251 (307)
T COG3386         217 GMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK  251 (307)
T ss_pred             ceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence            99999999999765555 499999998 654 4443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.48  E-value=0.00043  Score=58.71  Aligned_cols=69  Identities=14%  Similarity=0.152  Sum_probs=48.7

Q ss_pred             eeEEcCC-CeEEEEeC-----------------CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccc
Q 013362           82 HLMKSED-DNLLIINR-----------------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDW  143 (444)
Q Consensus        82 gL~~d~d-G~LYIADa-----------------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~  143 (444)
                      +|.++.+ |.+|++|+                 .+++++++|+.|++++.++.|-.                        
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~------------------------   57 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY------------------------   57 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES------------------------
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC------------------------
Confidence            6778887 99999998                 46899999999999998886321                        


Q ss_pred             ccccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCC
Q 013362          144 LLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRES  190 (444)
Q Consensus       144 ~~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t  190 (444)
                               .+.|++       ++.++..|+||.+..+||.|+-+++
T Consensus        58 ---------fpNGVa-------ls~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   58 ---------FPNGVA-------LSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             ---------SEEEEE-------E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             ---------ccCeEE-------EcCCCCEEEEEeccCceEEEEEEeC
Confidence                     011222       2345668999999999999998763

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.41  E-value=0.0016  Score=66.49  Aligned_cols=30  Identities=7%  Similarity=0.022  Sum_probs=26.8

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEEC
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDL  106 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl  106 (444)
                      ++.|++++++++|+||++|..++...+++.
T Consensus       183 ~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~  212 (367)
T TIGR02604       183 FQNPYGHSVDSWGDVFFCDNDDPPLCRVTP  212 (367)
T ss_pred             cCCCccceECCCCCEEEEccCCCceeEEcc
Confidence            899999999999999999998888777764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.36  E-value=0.013  Score=54.38  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=54.3

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.++++++++..||++...++.|+.+|+.++.+......+                                   ..|.
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------------------------------~~~~   76 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-----------------------------------PDPE   76 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-----------------------------------CCcc
Confidence            47789999998889999888999999998776543211110                                   1134


Q ss_pred             eeEEcCCC-eEEEEeCCCCEEEEEECCCCcE
Q 013362           82 HLMKSEDD-NLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        82 gL~~d~dG-~LYIADagnh~IrkIDl~tG~I  111 (444)
                      .++++++| .||++....++|+.+|+.++..
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~  107 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKV  107 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence            56676665 4888888788999999987653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.27  E-value=0.0014  Score=55.69  Aligned_cols=68  Identities=19%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             eEEEecCCCEEEEEeCC-----------------CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCc
Q 013362            5 ASFYHKDDDCLYIVDSE-----------------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDT   67 (444)
Q Consensus         5 GIa~D~~g~~LYVADTe-----------------NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~   67 (444)
                      +++++++++.+||.|+.                 +.++=+.|+.++.+++++..                          
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~--------------------------   55 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG--------------------------   55 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE--------------------------
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC--------------------------
Confidence            67888885689999984                 35677888888877777532                          


Q ss_pred             cccCCCCCCCCCcceeEEcCCCe-EEEEeCCCCEEEEEECC
Q 013362           68 KSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLA  107 (444)
Q Consensus        68 ~~~~~~~~~Ln~P~gL~~d~dG~-LYIADagnh~IrkIDl~  107 (444)
                               |.+|-||+++.|+. |+||.++.+||+|+-+.
T Consensus        56 ---------L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~   87 (89)
T PF03088_consen   56 ---------LYFPNGVALSPDESFVLVAETGRYRILRYWLK   87 (89)
T ss_dssp             ---------ESSEEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred             ---------CCccCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence                     88999999999865 99999999999999774

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.23  E-value=0.0014  Score=65.39  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEE--CCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRAD--MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkID--l~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      |.||+||.+-...|+-||-|+.|...|  ..+|.++-         . ..++  .          -.|++-|   .=..|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn---------r-~~i~--d----------lrk~~~~---e~~~P  214 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN---------R-KVIF--D----------LRKSQPF---ESLEP  214 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccC---------c-ceeE--E----------eccCCCc---CCCCC
Confidence            689999988899999999999996555  66665431         1 0111  0          0111111   13469


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcE-EEeecCCccceeec
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEI-KEAVKGFSKVLEIC  125 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I-~TiagG~~~~~~~~  125 (444)
                      -|+++|.+|+||||--+..+|.|+|+.||++ .++--.+++++..|
T Consensus       215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc  260 (310)
T KOG4499|consen  215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC  260 (310)
T ss_pred             CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence            9999999999999999999999999999985 45544566655433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.87  E-value=0.096  Score=48.28  Aligned_cols=128  Identities=10%  Similarity=0.061  Sum_probs=77.4

Q ss_pred             CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      .|....+..++.+|+++ ..+.|..+|+.||++.--..- +...                                 ..+
T Consensus        27 ~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~-~~~~---------------------------------~~~   71 (238)
T PF13360_consen   27 GPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDL-PGPI---------------------------------SGA   71 (238)
T ss_dssp             SEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEEEEC-SSCG---------------------------------GSG
T ss_pred             CccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeec-cccc---------------------------------cce
Confidence            33433453458999994 899999999999986422211 1000                                 000


Q ss_pred             cccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe-eeccccccCCceeeeeccceeeecccccCCcccceeeeeec
Q 013362          159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF-QFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSL  237 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~-~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~  237 (444)
                             ....++.||++...+ +|+.+|..+|.+.-- ........+    +..++...+.....+.+....+|..+++
T Consensus        72 -------~~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~  139 (238)
T PF13360_consen   72 -------PVVDGGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDP  139 (238)
T ss_dssp             -------EEEETTEEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred             -------eeeccccccccccee-eeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEec
Confidence                   134578899998666 999999999988442 222211111    2223323333333345555788999999


Q ss_pred             CCCeeeEEEeeeCCCC
Q 013362          238 LPGRIDIKVNVDIPSD  253 (444)
Q Consensus       238 ~pGri~i~v~v~~P~~  253 (444)
                      ..|++.-+..+..|.+
T Consensus       140 ~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen  140 KTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             TTTEEEEEEESSTT-S
T ss_pred             CCCcEEEEeecCCCCC
Confidence            9999988887776653

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.55  E-value=0.016  Score=60.14  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=60.8

Q ss_pred             Ccce---EEEecCCCEEEEEe---------CCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccc
Q 013362            2 RPAA---SFYHKDDDCLYIVD---------SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKS   69 (444)
Q Consensus         2 ~P~G---Ia~D~~g~~LYVAD---------TeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~   69 (444)
                      +|-|   ++++++++.|||+-         ...+.|-.||+.++.+......|.                          
T Consensus       246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--------------------------  299 (352)
T TIGR02658       246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--------------------------  299 (352)
T ss_pred             CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--------------------------
Confidence            4555   99999999999953         222589999999987766544431                          


Q ss_pred             cCCCCCCCCCcceeEEcCCC--eEEEEeCCCCEEEEEECCCCc-EEEe
Q 013362           70 EKLDPQSLIFPWHLMKSEDD--NLLIINRSFETLWIMDLASGE-IKEA  114 (444)
Q Consensus        70 ~~~~~~~Ln~P~gL~~d~dG--~LYIADagnh~IrkIDl~tG~-I~Ti  114 (444)
                               .||+|+++.||  .||+++..++.|-.||..+++ +.++
T Consensus       300 ---------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       300 ---------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ---------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                     37899999884  589999999999999999994 5555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.54  E-value=0.065  Score=53.88  Aligned_cols=149  Identities=16%  Similarity=0.146  Sum_probs=79.3

Q ss_pred             ceEEEecCCCEEEEEeC--CCCeEEEEECCCCeEEEecc-------CCCcCccCCcchhhhhcccCcc--ccc--Ccccc
Q 013362            4 AASFYHKDDDCLYIVDS--ENHAIRRADMGRRVLETVYP-------TSGISKKNNSLWAWIMEKLGFE--RDN--DTKSE   70 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADT--eNHaIRkIDl~tg~VtTVAG-------tG~~~~~~~~l~g~~~~~~G~a--~~a--~~~~~   70 (444)
                      ||+.+..+| .||..--  +.+.||++|+.+|.+.--.-       .|-. .-++.||--. =+.|.+  -+.  -....
T Consensus        48 QGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit-~~~d~l~qLT-Wk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   48 QGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGIT-ILGDKLYQLT-WKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEE-EETTEEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred             ccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEE-EECCEEEEEE-ecCCeEEEEccccceEEE
Confidence            799986455 7999876  45599999999997753221       1110 0111222100 011111  000  00111


Q ss_pred             CCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCCccceeecceehhhhhhhhhcCCccccccccc
Q 013362           71 KLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQID  149 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~  149 (444)
                      .|.=  -.+.|||+.++ ..||++| |+++|+.+|+.+-++. ++-=      ...|..+.                   
T Consensus       125 ~~~y--~~EGWGLt~dg-~~Li~SD-GS~~L~~~dP~~f~~~~~i~V------~~~g~pv~-------------------  175 (264)
T PF05096_consen  125 TFPY--PGEGWGLTSDG-KRLIMSD-GSSRLYFLDPETFKEVRTIQV------TDNGRPVS-------------------  175 (264)
T ss_dssp             EEE---SSS--EEEECS-SCEEEE--SSSEEEEE-TTT-SEEEEEE-------EETTEE---------------------
T ss_pred             EEec--CCcceEEEcCC-CEEEEEC-CccceEEECCcccceEEEEEE------EECCEECC-------------------
Confidence            1100  14789999887 6899998 6899999999876443 2220      00111110                   


Q ss_pred             ccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362          150 SSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       150 ~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~  196 (444)
                                  .+.-|-..++.||--==...+|.+||+.||.|..+
T Consensus       176 ------------~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  176 ------------NLNELEYINGKIYANVWQTDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             -------------EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred             ------------CcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence                        01122334677777777889999999999999774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.51  E-value=0.052  Score=56.41  Aligned_cols=120  Identities=11%  Similarity=0.117  Sum_probs=79.3

Q ss_pred             CCCEEEEEeCC----CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEc
Q 013362           11 DDDCLYIVDSE----NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKS   86 (444)
Q Consensus        11 ~g~~LYVADTe----NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d   86 (444)
                      ++..+||.|..    .++|-.||..++.|.--...|.                                   .|.++ ++
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~-----------------------------------~P~~~-~s   54 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGF-----------------------------------LPNPV-VA   54 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccC-----------------------------------CCcee-EC
Confidence            45689999998    3899999998886543222331                                   24454 55


Q ss_pred             CC-CeEEEEeC---------CCCEEEEEECCCCcEE-Eee-cCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362           87 ED-DNLLIINR---------SFETLWIMDLASGEIK-EAV-KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL  154 (444)
Q Consensus        87 ~d-G~LYIADa---------gnh~IrkIDl~tG~I~-Tia-gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~  154 (444)
                      +| ..||||.+         ..+.|..||++|+++. ++- ++.++..  .|                         .. 
T Consensus        55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--~~-------------------------~~-  106 (352)
T TIGR02658        55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--VG-------------------------TY-  106 (352)
T ss_pred             CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--cc-------------------------Cc-
Confidence            55 57999999         8999999999998754 333 2222211  00                         00 


Q ss_pred             cCCCcccccccccccCCeEEEEeCC-CCeEEEEeCCCCeEE-Eeeecc
Q 013362          155 KELPYAGLISSSIAFQNHILLCDIV-GQRIMRLNRESGVCS-NFQFSN  200 (444)
Q Consensus       155 ~Gip~a~~~Sgla~~~~~LyIADT~-nhRIRkvdl~tG~vS-T~~fsg  200 (444)
                         |.   ...+..++..|||++-. .+.|-.||+.++.+- +|...+
T Consensus       107 ---~~---~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658       107 ---PW---MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             ---cc---eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence               00   11234567789999965 999999999999874 465443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.36  E-value=0.0086  Score=41.52  Aligned_cols=31  Identities=19%  Similarity=0.148  Sum_probs=28.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR   32 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t   32 (444)
                      .|.|+|+|+.++.||.+|+..+.|+++++..
T Consensus        10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135       10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            6899999999999999999999999999853

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.13  E-value=0.3  Score=50.83  Aligned_cols=146  Identities=14%  Similarity=0.246  Sum_probs=90.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCC--CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR--RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t--g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      -|.-|+|+|.+...|+.---|+.|-......  |.++.+---....   .   +|.    |..                .
T Consensus       192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP---~---dF~----g~~----------------~  245 (346)
T COG2706         192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP---E---DFT----GTN----------------W  245 (346)
T ss_pred             CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc---c---ccC----CCC----------------c
Confidence            3778999999999999999999988776654  5555443221110   0   111    111                1


Q ss_pred             cceeEEcCCCe-EEEEeCCCCEEEE--EECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362           80 PWHLMKSEDDN-LLIINRSFETLWI--MDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE  156 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagnh~Irk--IDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G  156 (444)
                      --+|.++.+|. ||++|++-+.|+.  +|+.+|+++.+.- .+    +.|+                         .|.+
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~-~~----teg~-------------------------~PR~  295 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI-TP----TEGQ-------------------------FPRD  295 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE-ec----cCCc-------------------------CCcc
Confidence            12566777765 9999999999875  5777888766552 11    1111                         1111


Q ss_pred             CCcccccccccccCCeEEEE--eCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee
Q 013362          157 LPYAGLISSSIAFQNHILLC--DIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF  212 (444)
Q Consensus       157 ip~a~~~Sgla~~~~~LyIA--DT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~  212 (444)
                      +-       ++..++.|++|  |+.+=.|.++|.+||.++.++  ..-....|+|+.+
T Consensus       296 F~-------i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~--~~~~~p~Pvcv~f  344 (346)
T COG2706         296 FN-------INPSGRFLIAANQKSDNITVFERDKETGRLTLLG--RYAVVPEPVCVKF  344 (346)
T ss_pred             ce-------eCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc--cccCCCCcEEEEE
Confidence            11       23346677777  666777788999999998863  2223455666553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.08  E-value=0.82  Score=42.10  Aligned_cols=123  Identities=12%  Similarity=0.068  Sum_probs=64.4

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec-CCccceeecceehhhhhhhhhcCCccccccccccccccc
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK-GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLK  155 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag-G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~  155 (444)
                      +..+....+++ +.+|++.. +..|+.+|+.+|.+.--.. +.+....-+        +                  .. 
T Consensus       112 ~~~~~~~~~~~-~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--------~------------------~~-  162 (238)
T PF13360_consen  112 VRSSSSPAVDG-DRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPI--------S------------------SF-  162 (238)
T ss_dssp             TB--SEEEEET-TEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--E--------E------------------EE-
T ss_pred             cccccCceEec-CEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcce--------e------------------ee-
Confidence            44555666664 67777776 8899999999998743221 111100000        0                  00 


Q ss_pred             CCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecccccCCcccceeeee
Q 013362          156 ELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRC  235 (444)
Q Consensus       156 Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v  235 (444)
                          ....+.+...++.+|++...+. +..+|+.+|... .... .+.   ++.+  |   ..+.+..+..+...++..+
T Consensus       163 ----~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~-w~~~-~~~---~~~~--~---~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  163 ----SDINGSPVISDGRVYVSSGDGR-VVAVDLATGEKL-WSKP-ISG---IYSL--P---SVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             ----TTEEEEEECCTTEEEEECCTSS-EEEEETTTTEEE-EEEC-SS----ECEC--E---ECCCTEEEEEETTTEEEEE
T ss_pred             ----cccccceEEECCEEEEEcCCCe-EEEEECCCCCEE-EEec-CCC---ccCC--c---eeeCCEEEEEeCCCEEEEE
Confidence                0001112223568999987776 666699999854 3222 111   1110  1   1122222333346788888


Q ss_pred             ecCCCeee
Q 013362          236 SLLPGRID  243 (444)
Q Consensus       236 ~~~pGri~  243 (444)
                      |+.+|++.
T Consensus       228 d~~tG~~~  235 (238)
T PF13360_consen  228 DLKTGKVV  235 (238)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCCEE
Confidence            99999765

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=95.99  E-value=0.39  Score=49.78  Aligned_cols=74  Identities=19%  Similarity=0.226  Sum_probs=51.4

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      .++++.++|..+||+.. ...|.+||+.++. |.+|. .|                                   ..|.+
T Consensus        40 ~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~-~G-----------------------------------~~~~~   82 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIK-VG-----------------------------------GNPRG   82 (369)
T ss_dssp             EEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE--S-----------------------------------SEEEE
T ss_pred             eEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEe-cC-----------------------------------CCcce
Confidence            45778888999999975 5789999998874 44442 21                                   12578


Q ss_pred             eEEcCCC-eEEEEeCCCCEEEEEECCCCcE-EEe
Q 013362           83 LMKSEDD-NLLIINRSFETLWIMDLASGEI-KEA  114 (444)
Q Consensus        83 L~~d~dG-~LYIADagnh~IrkIDl~tG~I-~Ti  114 (444)
                      ++++.|| .+|+++...+++..+|..|.++ .++
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence            8888876 5999999999999999988764 444

...

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.85  E-value=0.093  Score=53.26  Aligned_cols=94  Identities=11%  Similarity=0.104  Sum_probs=51.2

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhccc-----Cc-cc----ccCcccc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKL-----GF-ER----DNDTKSE   70 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~-----G~-a~----~a~~~~~   70 (444)
                      |+|+|+++|+..+.||++|-+....-.|+.      ..+|. ..        ||-.-..     |. ..    ......|
T Consensus       181 RN~~~~~~d~~tg~l~~~d~G~~~~dein~------i~~G~-nY--------GWP~~~~~~~~~~~~~~~~~~~~~~~~P  245 (331)
T PF07995_consen  181 RNPFGLAFDPNTGRLWAADNGPDGWDEINR------IEPGG-NY--------GWPYCEGGPKYSGPPIGDAPSCPGFVPP  245 (331)
T ss_dssp             SEEEEEEEETTTTEEEEEEE-SSSSEEEEE------E-TT--B----------TTTBSSSCSTTSS-ECTGSS-TTS---
T ss_pred             CccccEEEECCCCcEEEEccCCCCCcEEEE------eccCC-cC--------CCCCCcCCCCCCCCccccccCCCCcCcc
Confidence            679999999995589999988766644432      12332 11        2221110     11 00    0010112


Q ss_pred             CCCCCCCCCcceeEEcC-------CCeEEEEeCCCCEEEEEECCCC
Q 013362           71 KLDPQSLIFPWHLMKSE-------DDNLLIINRSFETLWIMDLASG  109 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~-------dG~LYIADagnh~IrkIDl~tG  109 (444)
                      .+.-..=.+|.++.+..       .|.++|++.+.++|+++.++++
T Consensus       246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~  291 (331)
T PF07995_consen  246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED  291 (331)
T ss_dssp             SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred             ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC
Confidence            11111115688888752       3789999999999999998755

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=95.79  E-value=0.12  Score=58.78  Aligned_cols=185  Identities=16%  Similarity=0.145  Sum_probs=105.1

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      |.||.||-.+..+|-.|...|.||+..|..+.=+|+.-.                        .          |.+|-|
T Consensus      1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~------------------------~----------L~SPEG 1072 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS------------------------G----------LISPEG 1072 (1289)
T ss_pred             eeeeecccccceEEEeecCCCccccccccCCCCceeecc------------------------c----------CCCccc
Confidence            679999999999999999999999999864444443211                        1          889999


Q ss_pred             eEEcCC-CeEEEEeCCCCEEEEEECCCCcEEEeec-CC--cc--ceeec-ceehhhhhhhhhcCCccccccc-ccccccc
Q 013362           83 LMKSED-DNLLIINRSFETLWIMDLASGEIKEAVK-GF--SK--VLEIC-GVLVMEKVFLLKQMPQDWLLHQ-IDSSCSL  154 (444)
Q Consensus        83 L~~d~d-G~LYIADagnh~IrkIDl~tG~I~Tiag-G~--~~--~~~~~-G~li~~~~a~l~~~~~~~~~~~-~~~~~~~  154 (444)
                      |++|-- -++|.+|+.+.+|-.--|+..+-+.+.. +.  ++  .++.. |.|+.          .+|.-.. .....++
T Consensus      1073 iAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYw----------tDWnRenPkIets~m 1142 (1289)
T KOG1214|consen 1073 IAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYW----------TDWNRENPKIETSSM 1142 (1289)
T ss_pred             eeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceee----------ccccccCCcceeecc
Confidence            999854 6899999999999887775333333331 11  11  11111 22221          2443322 1111222


Q ss_pred             cCCC-------cccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-ccc
Q 013362          155 KELP-------YAGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGH  224 (444)
Q Consensus       155 ~Gip-------~a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~  224 (444)
                      +|--       ...+|.||+-  +...|--+|..+||.--+..+.---.++ |+|         |+.|+.++...- .++
T Consensus      1143 DG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i-~~~---------LqYPF~itsy~~~fY~ 1212 (1289)
T KOG1214|consen 1143 DGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVI-QNN---------LQYPFSITSYADHFYH 1212 (1289)
T ss_pred             CCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhh-hhc---------ccCceeeeecccccee
Confidence            2200       0123455543  3456888899999998887763333332 233         333444433222 333


Q ss_pred             CCcccceeeeeecCCCe
Q 013362          225 QGSWTDHIQRCSLLPGR  241 (444)
Q Consensus       225 ~g~~~~~i~~v~~~pGr  241 (444)
                      .|=...+|..|++..++
T Consensus      1213 TDWk~n~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1213 TDWKRNGVVSVNKHSGQ 1229 (1289)
T ss_pred             eccccCceEEeeccccc
Confidence            44444555555444443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.69  E-value=0.062  Score=53.27  Aligned_cols=76  Identities=20%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|+|+++|+..+.|||-..++++|-.+|..-+.+..+.=.+..              .|+..  .          +..|-
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~--------------~gl~~--~----------~~QpE  225 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF--------------HGLSK--D----------IPQPE  225 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG--------------GG-SS---------------SEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc--------------cCccc--c----------cCCcc
Confidence            6899999999999999999999999999655555655322101              12211  2          88899


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEE
Q 013362           82 HLMKSEDDNLLIINRSFETLWIM  104 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkI  104 (444)
                      ||+++++|+|||+.--| ...++
T Consensus       226 GIa~d~~G~LYIvsEpN-lfy~f  247 (248)
T PF06977_consen  226 GIAFDPDGNLYIVSEPN-LFYRF  247 (248)
T ss_dssp             EEEE-TT--EEEEETTT-EEEEE
T ss_pred             EEEECCCCCEEEEcCCc-eEEEe
Confidence            99999999999998644 55544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.68  E-value=0.36  Score=48.46  Aligned_cols=85  Identities=16%  Similarity=0.100  Sum_probs=58.6

Q ss_pred             cceEEEecCCCEEEEEeCCC------------CeEEEEECCCCeE-EEec-cCCCcCccCCcchhhhhcccCcccccCcc
Q 013362            3 PAASFYHKDDDCLYIVDSEN------------HAIRRADMGRRVL-ETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTK   68 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeN------------HaIRkIDl~tg~V-tTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a~~~   68 (444)
                      .+++.+|..+ .|+|.|++.            -+|-.+|+.++.+ .++- +.... + +                    
T Consensus         3 V~~v~iD~~~-rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~-~-~--------------------   59 (287)
T PF03022_consen    3 VQRVQIDECG-RLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIA-P-P--------------------   59 (287)
T ss_dssp             EEEEEE-TTS-EEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS---T--------------------
T ss_pred             ccEEEEcCCC-CEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHc-c-c--------------------
Confidence            5789999776 899999985            5899999998755 4432 21111 0 0                    


Q ss_pred             ccCCCCCCCCCcceeEEcCC------CeEEEEeCCCCEEEEEECCCCcEEEeecCC
Q 013362           69 SEKLDPQSLIFPWHLMKSED------DNLLIINRSFETLWIMDLASGEIKEAVKGF  118 (444)
Q Consensus        69 ~~~~~~~~Ln~P~gL~~d~d------G~LYIADagnh~IrkIDl~tG~I~TiagG~  118 (444)
                              -.+-.++++|..      +..||+|++...|-++|+.+|....+..+.
T Consensus        60 --------~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~  107 (287)
T PF03022_consen   60 --------DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS  107 (287)
T ss_dssp             --------CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG
T ss_pred             --------ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC
Confidence                    112235666652      579999999999999999999998887543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=95.54  E-value=0.11  Score=56.70  Aligned_cols=83  Identities=23%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             CCcceEEEecCCCEEEEEeCCCC-------------------eEEEEECCCC-------eEEEeccCCCcCccCCcchhh
Q 013362            1 MRPAASFYHKDDDCLYIVDSENH-------------------AIRRADMGRR-------VLETVYPTSGISKKNNSLWAW   54 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNH-------------------aIRkIDl~tg-------~VtTVAGtG~~~~~~~~l~g~   54 (444)
                      .||-||++++..+.||||-|+|.                   .|-+++...+       +.+.++-.|......      
T Consensus       350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~------  423 (524)
T PF05787_consen  350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDAS------  423 (524)
T ss_pred             cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccc------
Confidence            48999999999889999999988                   5666665544       443333222110000      


Q ss_pred             hhcccCcccccCccccCCCCCCCCCcceeEEcCCCeEEEE-eCCCCE
Q 013362           55 IMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII-NRSFET  100 (444)
Q Consensus        55 ~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~LYIA-Dagnh~  100 (444)
                         .        ......+...|.+|=.|+++++|+|||+ |.++++
T Consensus       424 ---~--------~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~  459 (524)
T PF05787_consen  424 ---G--------NGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSN  459 (524)
T ss_pred             ---c--------cccCcccCCCcCCCCceEECCCCCEEEEeCCCCCC
Confidence               0        0001112334999999999999999997 444444

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.47  E-value=0.71  Score=45.86  Aligned_cols=184  Identities=15%  Similarity=0.199  Sum_probs=95.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .++||+|+++.+.||.+-=+...|-.+++....+.++.=.|                                  +.-|-
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g----------------------------------~~D~E   68 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG----------------------------------FGDYE   68 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-----------------------------------SSEE
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC----------------------------------CCCce
Confidence            47999999998899999888999999997655555554322                                  22356


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECC--CCcE-----EEeecCCc----cceeecce-ehhhhhhhh-hcCCcccccccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLA--SGEI-----KEAVKGFS----KVLEICGV-LVMEKVFLL-KQMPQDWLLHQI  148 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~--tG~I-----~TiagG~~----~~~~~~G~-li~~~~a~l-~~~~~~~~~~~~  148 (444)
                      +|++.++|.+.|++-..+++..++..  +..+     +.+.-|..    +..++-+. ....++-.. ++.|...+.-+.
T Consensus        69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            88998888999999889999988872  3332     22221111    11111000 000000001 112322111111


Q ss_pred             c-ccccc-----cCCC----cccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccce
Q 013362          149 D-SSCSL-----KELP----YAGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLER  216 (444)
Q Consensus       149 ~-~~~~~-----~Gip----~a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~  216 (444)
                      . .....     .+.+    +..-+|+++.  ..++|||-..++++|..+|.++..++.+.+.. |..|++-.+..|=++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~-g~~gl~~~~~QpEGI  227 (248)
T PF06977_consen  149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR-GFHGLSKDIPQPEGI  227 (248)
T ss_dssp             TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST-TGGG-SS---SEEEE
T ss_pred             ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC-cccCcccccCCccEE
Confidence            0 00000     0011    1223676654  45689999999999999998777778776544 566778888888777


Q ss_pred             eeec
Q 013362          217 VYAV  220 (444)
Q Consensus       217 v~~~  220 (444)
                      +++.
T Consensus       228 a~d~  231 (248)
T PF06977_consen  228 AFDP  231 (248)
T ss_dssp             EE-T
T ss_pred             EECC
Confidence            7654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.24  E-value=0.11  Score=53.63  Aligned_cols=98  Identities=18%  Similarity=0.292  Sum_probs=64.2

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee--cCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV--KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL  154 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia--gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~  154 (444)
                      |..|.+-.+.+ |.||++|.+.+.+.++|+++|...+++  .|.++.+.-.|.+..-..+            +......+
T Consensus       202 LsmPhSPRWhd-grLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmS------------k~R~~~~f  268 (335)
T TIGR03032       202 LSMPHSPRWYQ-GKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLS------------KLRESRVF  268 (335)
T ss_pred             ccCCcCCcEeC-CeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEec------------cccCCCCc
Confidence            77888888887 999999999999999999999999888  3677666545544321111            11123344


Q ss_pred             cCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeecc
Q 013362          155 KELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSN  200 (444)
Q Consensus       155 ~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg  200 (444)
                      .|+|-.+...             ...--|..||+.||.+ -.+.|.|
T Consensus       269 ~glpl~~~l~-------------~~~CGv~vidl~tG~vv~~l~feg  302 (335)
T TIGR03032       269 GGLPIEERLD-------------ALGCGVAVIDLNSGDVVHWLRFEG  302 (335)
T ss_pred             CCCchhhhhh-------------hhcccEEEEECCCCCEEEEEEeCC
Confidence            5666422111             1124577888888884 5556655

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.11  E-value=0.84  Score=46.26  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=28.6

Q ss_pred             CcceeEEcCCCeEEEEeCCC------CEEEEEECCCCcE
Q 013362           79 FPWHLMKSEDDNLLIINRSF------ETLWIMDLASGEI  111 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagn------h~IrkIDl~tG~I  111 (444)
                      -|-+|++..+|.+||++-+.      ++|++++++ |.+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~  123 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRV  123 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-Ccc
Confidence            67799997779999999999      999999987 765

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.03  E-value=0.32  Score=50.25  Aligned_cols=46  Identities=24%  Similarity=0.249  Sum_probs=36.4

Q ss_pred             CCCCCcceeEEcC------CCeEEEEeCCCCEEEEEECCCCc-EEEeecCCcc
Q 013362           75 QSLIFPWHLMKSE------DDNLLIINRSFETLWIMDLASGE-IKEAVKGFSK  120 (444)
Q Consensus        75 ~~Ln~P~gL~~d~------dG~LYIADagnh~IrkIDl~tG~-I~TiagG~~~  120 (444)
                      ..||+||+|++.+      .|.|+|.+-+..+|-.+|+.+|. +-.+......
T Consensus       241 g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~  293 (336)
T TIGR03118       241 GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNH  293 (336)
T ss_pred             CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence            3499999999954      38999999999999999999886 4455443333

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=94.84  E-value=3.7  Score=43.03  Aligned_cols=177  Identities=14%  Similarity=0.116  Sum_probs=106.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      |++-.-++|+++.|.++|-+.-+|...++..|..+-.... ..                              +.=..|+
T Consensus       146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v------------------------------~~G~GPR  194 (346)
T COG2706         146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EV------------------------------KPGAGPR  194 (346)
T ss_pred             ccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-cc------------------------------CCCCCcc
Confidence            3566677889999999999999999999987755432211 00                              0123488


Q ss_pred             eeEEcCCC-eEEEEeCCCCEEEEEECCC--CcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           82 HLMKSEDD-NLLIINRSFETLWIMDLAS--GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        82 gL~~d~dG-~LYIADagnh~IrkIDl~t--G~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      +|++.++| -.|+..--|.+|-.+....  |+++++=.                   +.-+|.++....        + +
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~-------------------i~tlP~dF~g~~--------~-~  246 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT-------------------IDTLPEDFTGTN--------W-A  246 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee-------------------eccCccccCCCC--------c-e
Confidence            99999986 5899999999986665544  66554421                   111222221110        0 0


Q ss_pred             cccccccccccCCeEEEEeCCCCeEE--EEeCCCCeEEEeeeccccccCCceeeeeccceeeeccccc-CCcccceee--
Q 013362          159 YAGLISSSIAFQNHILLCDIVGQRIM--RLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGH-QGSWTDHIQ--  233 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~nhRIR--kvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~-~g~~~~~i~--  233 (444)
                      .+.-   +..++..||+|+-.-..|-  +||..+|....++.-..+. -.|=.|++-    .+...++ +++..++|.  
T Consensus       247 aaIh---is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg-~~PR~F~i~----~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         247 AAIH---ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG-QFPRDFNIN----PSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             eEEE---ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC-cCCccceeC----CCCCEEEEEccCCCcEEEE
Confidence            0111   3356889999998777664  5888899988876543321 135445441    1111221 344444444  


Q ss_pred             eeecCCCeeeEE
Q 013362          234 RCSLLPGRIDIK  245 (444)
Q Consensus       234 ~v~~~pGri~i~  245 (444)
                      +++-.+|+++..
T Consensus       319 ~~d~~TG~L~~~  330 (346)
T COG2706         319 ERDKETGRLTLL  330 (346)
T ss_pred             EEcCCCceEEec
Confidence            447788888753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=94.84  E-value=0.37  Score=50.00  Aligned_cols=68  Identities=21%  Similarity=0.256  Sum_probs=46.0

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCC-
Q 013362           12 DDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-   89 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG-   89 (444)
                      ++.+||+..+.+.|..||..++. +.++...+ .                                +  +-++.+.+|| 
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~--------------------------------~--h~~~~~s~Dgr   49 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-A--------------------------------P--HAGLKFSPDGR   49 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-T--------------------------------E--EEEEE-TT-SS
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-C--------------------------------c--eeEEEecCCCC
Confidence            45788999999999999998865 55554322 1                                1  2234455655 


Q ss_pred             eEEEEeCCCCEEEEEECCCCc-EEEee
Q 013362           90 NLLIINRSFETLWIMDLASGE-IKEAV  115 (444)
Q Consensus        90 ~LYIADagnh~IrkIDl~tG~-I~Tia  115 (444)
                      .+|++.+ ...|-+||+.+++ +.++.
T Consensus        50 ~~yv~~r-dg~vsviD~~~~~~v~~i~   75 (369)
T PF02239_consen   50 YLYVANR-DGTVSVIDLATGKVVATIK   75 (369)
T ss_dssp             EEEEEET-TSEEEEEETTSSSEEEEEE
T ss_pred             EEEEEcC-CCeEEEEECCcccEEEEEe
Confidence            5999986 5799999999986 44554

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.65  E-value=3  Score=44.03  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=23.7

Q ss_pred             eEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362           83 LMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        83 L~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag  116 (444)
                      ..+++||. |+++ + .++.+||.+|+.+|+++.+..
T Consensus       267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~  303 (448)
T PRK04792        267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR  303 (448)
T ss_pred             eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc
Confidence            45666654 6553 3 355689999999998877663

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.35  E-value=0.19  Score=50.37  Aligned_cols=64  Identities=20%  Similarity=0.259  Sum_probs=47.5

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCC----CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGR----RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~t----g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      -|+++|+.| .||++|.++++|-+.+..+    ..+++|+=..                                ..|..
T Consensus       189 ~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~--------------------------------~~l~~  235 (287)
T PF03022_consen  189 DGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP--------------------------------RTLQW  235 (287)
T ss_dssp             CEEEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C--------------------------------C-GSS
T ss_pred             ceEEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcC--------------------------------ceeec
Confidence            689999876 8999999999999999765    4677776331                                12999


Q ss_pred             cceeEEcC--CCeEEEEeCCCCE
Q 013362           80 PWHLMKSE--DDNLLIINRSFET  100 (444)
Q Consensus        80 P~gL~~d~--dG~LYIADagnh~  100 (444)
                      |-++.++.  +|.|||.-..-|+
T Consensus       236 pd~~~i~~~~~g~L~v~snrl~~  258 (287)
T PF03022_consen  236 PDGLKIDPEGDGYLWVLSNRLQR  258 (287)
T ss_dssp             EEEEEE-T--TS-EEEEE-S--S
T ss_pred             cceeeeccccCceEEEEECcchH
Confidence            99999999  8999998755444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=94.18  E-value=0.47  Score=49.98  Aligned_cols=38  Identities=11%  Similarity=0.065  Sum_probs=31.6

Q ss_pred             CCCcceeEEcCCC-eEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           77 LIFPWHLMKSEDD-NLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        77 Ln~P~gL~~d~dG-~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      =--|.||+++..| +|||||++-+ ++++++..|..+.++
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~  152 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLA  152 (376)
T ss_pred             cCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceecc
Confidence            4569999999885 9999999875 899999988765555

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.03  E-value=1.5  Score=44.80  Aligned_cols=103  Identities=13%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362           12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL   91 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L   91 (444)
                      ++.||+++. ++.+..+|+.+|.+               +|...                     +..+..+++.+ +.|
T Consensus       256 ~~~vy~~~~-~g~l~ald~~tG~~---------------~W~~~---------------------~~~~~~~~~~~-~~v  297 (394)
T PRK11138        256 GGVVYALAY-NGNLVALDLRSGQI---------------VWKRE---------------------YGSVNDFAVDG-GRI  297 (394)
T ss_pred             CCEEEEEEc-CCeEEEEECCCCCE---------------EEeec---------------------CCCccCcEEEC-CEE
Confidence            457898875 57888888876643               23111                     11122334554 799


Q ss_pred             EEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccccccccCC
Q 013362           92 LIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQN  171 (444)
Q Consensus        92 YIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla~~~~  171 (444)
                      |+.+ .++++..+|+.+|++.  -. .....                                 +..    .++.+..++
T Consensus       298 y~~~-~~g~l~ald~~tG~~~--W~-~~~~~---------------------------------~~~----~~sp~v~~g  336 (394)
T PRK11138        298 YLVD-QNDRVYALDTRGGVEL--WS-QSDLL---------------------------------HRL----LTAPVLYNG  336 (394)
T ss_pred             EEEc-CCCeEEEEECCCCcEE--Ec-ccccC---------------------------------CCc----ccCCEEECC
Confidence            9987 4678999999999763  21 01000                                 000    111123578


Q ss_pred             eEEEEeCCCCeEEEEeCCCCeEE
Q 013362          172 HILLCDIVGQRIMRLNRESGVCS  194 (444)
Q Consensus       172 ~LyIADT~nhRIRkvdl~tG~vS  194 (444)
                      .||+.|.. ..|..+|.++|.+-
T Consensus       337 ~l~v~~~~-G~l~~ld~~tG~~~  358 (394)
T PRK11138        337 YLVVGDSE-GYLHWINREDGRFV  358 (394)
T ss_pred             EEEEEeCC-CEEEEEECCCCCEE
Confidence            89999865 57889999999863

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.88  E-value=1.9  Score=46.52  Aligned_cols=39  Identities=18%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPT   41 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGt   41 (444)
                      +|.+|++.++| .|||+.....+|++++..++..+++.+.
T Consensus        31 ~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l   69 (454)
T TIGR03606        31 KPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTL   69 (454)
T ss_pred             CceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecC
Confidence            69999999987 7999998789999999777766655554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.84  E-value=3.1  Score=43.24  Aligned_cols=29  Identities=3%  Similarity=-0.020  Sum_probs=25.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG   31 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~   31 (444)
                      +|-||++.|.+ -++|+|.+.......|..
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~   52 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGN   52 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCC
Confidence            58899999887 699999999999999874

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=93.84  E-value=5.3  Score=41.64  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=24.7

Q ss_pred             eeEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362           82 HLMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        82 gL~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag  116 (444)
                      ...++++|. |+++ + .++.+|+.+|+.+|.++.+..
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~  289 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN  289 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc
Confidence            446777764 5443 3 456789999999999877653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=93.73  E-value=2.6  Score=44.18  Aligned_cols=34  Identities=6%  Similarity=0.091  Sum_probs=23.9

Q ss_pred             eeEEcCCCe--EEEEeC-CCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDDN--LLIINR-SFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG~--LYIADa-gnh~IrkIDl~tG~I~Tia  115 (444)
                      ...++++|.  +|.+|. +..+||++|+.+|.++.+.
T Consensus       291 ~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt  327 (429)
T PRK03629        291 EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT  327 (429)
T ss_pred             ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence            345666654  466665 4569999999998887765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.33  E-value=2.6  Score=44.52  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=22.3

Q ss_pred             eEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362           83 LMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        83 L~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia  115 (444)
                      ..+++||. | |.++. ++.+|+++|+.+|+++.+.
T Consensus       311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence            34555553 4 44443 5679999999999887664

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.16  E-value=0.53  Score=50.72  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=34.2

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      |.+||+|++.++|.|||+.+...+|++++..++..+.+.
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~   67 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF   67 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee
Confidence            999999999999999999998899999998777655444

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=93.10  E-value=9.3  Score=39.94  Aligned_cols=34  Identities=9%  Similarity=0.155  Sum_probs=23.2

Q ss_pred             eeEEcCCC-eEEEE--eCCCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDD-NLLII--NRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG-~LYIA--Dagnh~IrkIDl~tG~I~Tia  115 (444)
                      ...+++|| .|+++  ..++.+||.+|+.++.++.+.
T Consensus       244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt  280 (427)
T PRK02889        244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT  280 (427)
T ss_pred             ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence            34566766 45543  356678999999888777664

>PRK01742 tolB translocation protein TolB; Provisional

Probab=93.06  E-value=7  Score=40.79  Aligned_cols=35  Identities=14%  Similarity=0.192  Sum_probs=24.4

Q ss_pred             eeEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362           82 HLMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        82 gL~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag  116 (444)
                      .+++++||. |+++ + .++-+||.+|+.+|.++.+..
T Consensus       252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~  289 (429)
T PRK01742        252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS  289 (429)
T ss_pred             ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc
Confidence            356777764 5554 2 455689999999888877764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.97  E-value=0.5  Score=48.02  Aligned_cols=67  Identities=15%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             CcceEEEecC------CCEEEEEeCCCCeEEEEECCCC-eEE---EeccCCCcCccCCcchhhhhcccCcccccCccccC
Q 013362            2 RPAASFYHKD------DDCLYIVDSENHAIRRADMGRR-VLE---TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEK   71 (444)
Q Consensus         2 ~P~GIa~D~~------g~~LYVADTeNHaIRkIDl~tg-~Vt---TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~   71 (444)
                      .|.|+++-..      .+.++|+|...++|.++.+.++ .+.   ++.+                         .     
T Consensus       254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------------------~-----  303 (331)
T PF07995_consen  254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG-------------------------G-----  303 (331)
T ss_dssp             -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT-------------------------T-----
T ss_pred             ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc-------------------------c-----
Confidence            4777776422      2479999999999999998644 221   1110                         0     


Q ss_pred             CCCCCCC-CcceeEEcCCCeEEEEeCCCCEEEE
Q 013362           72 LDPQSLI-FPWHLMKSEDDNLLIINRSFETLWI  103 (444)
Q Consensus        72 ~~~~~Ln-~P~gL~~d~dG~LYIADagnh~Irk  103 (444)
                           +. .|.+|++.+||.|||+|-.+.+|||
T Consensus       304 -----~~~r~~~v~~~pDG~Lyv~~d~~G~iyR  331 (331)
T PF07995_consen  304 -----FGGRPRDVAQGPDGALYVSDDSDGKIYR  331 (331)
T ss_dssp             -----SSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred             -----CCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence                 33 5789999999999999999999987

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.90  E-value=0.31  Score=49.04  Aligned_cols=88  Identities=14%  Similarity=0.168  Sum_probs=57.0

Q ss_pred             CCcceeEEcCC-CeEEEEeCCCCEE--EEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362           78 IFPWHLMKSED-DNLLIINRSFETL--WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL  154 (444)
Q Consensus        78 n~P~gL~~d~d-G~LYIADagnh~I--rkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~  154 (444)
                      --|-+|++|.+ -.+|+.|+.|+.|  |.+|..||.++.     ++..  +         -++.            . .+
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-----r~~i--~---------dlrk------------~-~~  208 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-----RKVI--F---------DLRK------------S-QP  208 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccC-----ccee--E---------Eecc------------C-CC
Confidence            34667777765 6899999999999  777799998751     1110  0         0000            0 01


Q ss_pred             cCCCcccccccccc-cCCeEEEEeCCCCeEEEEeCCCCeE-EEee
Q 013362          155 KELPYAGLISSSIA-FQNHILLCDIVGQRIMRLNRESGVC-SNFQ  197 (444)
Q Consensus       155 ~Gip~a~~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~v-ST~~  197 (444)
                      .+-+   .|-|++. -.+.||||=-++.+|.++|+.||.+ .+|.
T Consensus       209 ~e~~---~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik  250 (310)
T KOG4499|consen  209 FESL---EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK  250 (310)
T ss_pred             cCCC---CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence            1111   1333332 3679999999999999999999986 4554

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=92.81  E-value=0.51  Score=54.11  Aligned_cols=150  Identities=19%  Similarity=0.248  Sum_probs=91.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|||+|-.+.++|-+|+.|.+|-..-|. |       +  + +|  .||           ...          |-.|.
T Consensus      1069 SPEGiAVDh~~Rn~ywtDS~lD~IevA~Ld-G-------~--~-rk--vLf-----------~td----------LVNPR 1114 (1289)
T KOG1214|consen 1069 SPEGIAVDHIRRNMYWTDSVLDKIEVALLD-G-------S--E-RK--VLF-----------YTD----------LVNPR 1114 (1289)
T ss_pred             CccceeeeeccceeeeeccccchhheeecC-C-------c--e-ee--EEE-----------eec----------ccCcc
Confidence            599999999999999999999998877653 2       2  1 01  121           112          88899


Q ss_pred             eeEEcCC-CeEEEEe--CCCCEEEEEECCCCcEEEee-c---CCccceeecceehhhhhhhhhcCCccccccccc-----
Q 013362           82 HLMKSED-DNLLIIN--RSFETLWIMDLASGEIKEAV-K---GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQID-----  149 (444)
Q Consensus        82 gL~~d~d-G~LYIAD--agnh~IrkIDl~tG~I~Tia-g---G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~-----  149 (444)
                      +|++|.= |+||.+|  +-|-+|-+.+++ |+=..|. .   |.+..+.....   ++.       .=|.-.-+.     
T Consensus      1115 ~iv~D~~rgnLYwtDWnRenPkIets~mD-G~NrRilin~DigLPNGLtfdpf---s~~-------LCWvDAGt~rleC~ 1183 (1289)
T KOG1214|consen 1115 AIVVDPIRGNLYWTDWNRENPKIETSSMD-GENRRILINTDIGLPNGLTFDPF---SKL-------LCWVDAGTKRLECT 1183 (1289)
T ss_pred             eEEeecccCceeeccccccCCcceeeccC-CccceEEeecccCCCCCceeCcc---cce-------eeEEecCCcceeEe
Confidence            9999874 8999998  456677777775 4433333 1   33333221110   000       011110000     


Q ss_pred             --cccc----ccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeec
Q 013362          150 --SSCS----LKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFS  199 (444)
Q Consensus       150 --~~~~----~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fs  199 (444)
                        .+.+    +.++.+   |-+|+-.+.++|..|=--++|..|++.++.-+.+.++
T Consensus      1184 ~p~g~gRR~i~~~LqY---PF~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p 1236 (1289)
T KOG1214|consen 1184 LPDGTGRRVIQNNLQY---PFSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLP 1236 (1289)
T ss_pred             cCCCCcchhhhhcccC---ceeeeeccccceeeccccCceEEeecccccccccccc
Confidence              0000    111111   3355666778999999999999999998888777543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=92.78  E-value=4.2  Score=42.61  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=25.3

Q ss_pred             eeEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362           82 HLMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        82 gL~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag  116 (444)
                      .+.+++||. |+++ + .++.+||.+|+++|.++.+..
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~  284 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD  284 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC
Confidence            356777764 6654 3 456689999999998877664

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=92.56  E-value=0.54  Score=48.78  Aligned_cols=37  Identities=14%  Similarity=0.168  Sum_probs=30.4

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPT   41 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGt   41 (444)
                      |.+--++  ++.|||+|++.+.|.++|+.+|..++|+=-
T Consensus       205 PhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~v  241 (335)
T TIGR03032       205 PHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFL  241 (335)
T ss_pred             CcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEEC
Confidence            5555664  347999999999999999999999998744

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=92.56  E-value=4.2  Score=42.41  Aligned_cols=33  Identities=9%  Similarity=0.187  Sum_probs=22.4

Q ss_pred             eEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362           83 LMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        83 L~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia  115 (444)
                      ..+++||. | |.+|. +..+|+.+|+.+|.++.+.
T Consensus       297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt  332 (433)
T PRK04922        297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT  332 (433)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence            45666654 3 44554 4568999999888877664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=92.41  E-value=15  Score=37.92  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             eEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362           83 LMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        83 L~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag  116 (444)
                      ..+++||. |+++ + .++..||.+|+++|.++.+..
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~  284 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN  284 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence            45666664 5443 3 455689999999998877653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.38  E-value=4.1  Score=41.07  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=48.5

Q ss_pred             EcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccc
Q 013362           85 KSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS  164 (444)
Q Consensus        85 ~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~S  164 (444)
                      +++ +.||+++ .+++|..+|+.+|++.  -. ....    +                             +..    .+
T Consensus       277 ~~~-~~vyv~~-~~G~l~~~d~~tG~~~--W~-~~~~----~-----------------------------~~~----~s  314 (377)
T TIGR03300       277 VDD-NRLYVTD-ADGVVVALDRRSGSEL--WK-NDEL----K-----------------------------YRQ----LT  314 (377)
T ss_pred             EeC-CEEEEEC-CCCeEEEEECCCCcEE--Ec-cccc----c-----------------------------CCc----cc
Confidence            444 7899986 6789999999999753  11 0000    0                             000    01


Q ss_pred             cccccCCeEEEEeCCCCeEEEEeCCCCeEE-EeeeccccccCCce
Q 013362          165 SSIAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNFAILGLPY  208 (444)
Q Consensus       165 gla~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg~g~lg~P~  208 (444)
                      +....++.||+.+.. ..|..+|.++|.+. ++...+.+....|+
T Consensus       315 sp~i~g~~l~~~~~~-G~l~~~d~~tG~~~~~~~~~~~~~~~sp~  358 (377)
T TIGR03300       315 APAVVGGYLVVGDFE-GYLHWLSREDGSFVARLKTDGSGIASPPV  358 (377)
T ss_pred             cCEEECCEEEEEeCC-CEEEEEECCCCCEEEEEEcCCCccccCCE
Confidence            112346789998754 57999999888763 44444434455553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=92.31  E-value=3.4  Score=43.60  Aligned_cols=32  Identities=16%  Similarity=0.395  Sum_probs=21.9

Q ss_pred             EcCCC-eEEE-Ee-CCCCEEEEEECCCCcEEEeec
Q 013362           85 KSEDD-NLLI-IN-RSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        85 ~d~dG-~LYI-AD-agnh~IrkIDl~tG~I~Tiag  116 (444)
                      +++|| .|++ .+ .++.+||.+|+.+|..+.+..
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~  274 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN  274 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc
Confidence            55555 3443 33 456899999999888777653

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=92.24  E-value=2.1  Score=45.63  Aligned_cols=97  Identities=13%  Similarity=0.150  Sum_probs=57.2

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhh--h-cc--cCc-----ccccCcccc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWI--M-EK--LGF-----ERDNDTKSE   70 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~--~-~~--~G~-----a~~a~~~~~   70 (444)
                      |+|+|++||+..+.||++|-+.-.+|-=|    .+.-+ -.|       +-|||-  . ++  +|.     ...+..-.+
T Consensus       239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~D----eln~i-~~G-------~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p  306 (399)
T COG2133         239 RNPQGLAWHPVTGALWTTEHGPDALRGPD----ELNSI-RPG-------KNYGWPYAYFGQNYDGRAIPDGTVVAGAIQP  306 (399)
T ss_pred             CCccceeecCCCCcEEEEecCCCcccCcc----ccccc-ccC-------CccCCceeccCcccCccccCCCcccccccCC
Confidence            68999999999779999999887772222    22222 111       112332  1 10  111     111121234


Q ss_pred             CCCCCCCCCcceeEEcC-C------CeEEEEeCCCCEEEEEECCCC
Q 013362           71 KLDPQSLIFPWHLMKSE-D------DNLLIINRSFETLWIMDLASG  109 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~-d------G~LYIADagnh~IrkIDl~tG  109 (444)
                      +|.=+.=-.|.++++.. +      |.|||+-.+.-.+.+++++.+
T Consensus       307 ~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~  352 (399)
T COG2133         307 VYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGN  352 (399)
T ss_pred             ceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCC
Confidence            44334445578999874 2      689999999888888877644

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.12  E-value=0.24  Score=41.95  Aligned_cols=30  Identities=20%  Similarity=0.184  Sum_probs=27.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG   31 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~   31 (444)
                      -|.||+++++++.||||++..|.|+.....
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            489999999999999999999999998754

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=92.04  E-value=10  Score=37.92  Aligned_cols=186  Identities=9%  Similarity=0.020  Sum_probs=100.2

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      .||.|.|..+.||-. +..++|..||..+|..+-+ |.....               .+.             .-.+.++
T Consensus        30 ~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~v-g~s~~~---------------~al-------------~g~~~gv   79 (236)
T PF14339_consen   30 VGIDFRPANGQLYGL-GSTGRLYTINPATGAATPV-GASPLT---------------VAL-------------SGTAFGV   79 (236)
T ss_pred             EEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEe-eccccc---------------ccc-------------cCceEEE
Confidence            589999998899988 5569999999999976555 432220               000             0112333


Q ss_pred             EEcCC-CeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccc
Q 013362           84 MKSED-DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGL  162 (444)
Q Consensus        84 ~~d~d-G~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~  162 (444)
                      -+.+- +.|.|--. +.|=.|+++++|.+...-+ .-....  |           +++..       ......+.+|-..
T Consensus        80 DFNP~aDRlRvvs~-~GqNlR~npdtGav~~~Dg-~L~y~~--g-----------d~~~G-------~~p~v~aaAYTNs  137 (236)
T PF14339_consen   80 DFNPAADRLRVVSN-TGQNLRLNPDTGAVTIVDG-NLAYAA--G-----------DMNAG-------TTPGVTAAAYTNS  137 (236)
T ss_pred             ecCcccCcEEEEcc-CCcEEEECCCCCCceeccC-ccccCC--C-----------ccccC-------CCCceEEEEEecc
Confidence            33332 46666532 5567788999998643322 100000  0           00000       0000011222111


Q ss_pred             cccccccCCeEEEEeCCCCeEEEE-eCCCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccceeeeeecCCC
Q 013362          163 ISSSIAFQNHILLCDIVGQRIMRL-NRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSLLPG  240 (444)
Q Consensus       163 ~Sgla~~~~~LyIADT~nhRIRkv-dl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~i~~v~~~pG  240 (444)
                      ..+ +.-.-.||-.|+...++.+. .+++|+..+++.-|+.. ..-+-|.. +-+.....+....+.....+-+|++.+|
T Consensus       138 ~~g-~~t~TtLy~ID~~~~~Lv~Q~ppN~GtL~~vG~LGvd~-~~~~gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG  215 (236)
T PF14339_consen  138 FAG-ATTSTTLYDIDTTLDALVTQNPPNDGTLNTVGPLGVDA-AGDAGFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTG  215 (236)
T ss_pred             cCC-CccceEEEEEecCCCeEEEecCCCCCcEEeeecccccc-CcccceeeecCCCcceEEEEEecCCCcEEEEEECCCc
Confidence            111 11135799999999999888 88999999997655421 11222222 2111222222222222268999999999


Q ss_pred             eee
Q 013362          241 RID  243 (444)
Q Consensus       241 ri~  243 (444)
                      +..
T Consensus       216 ~at  218 (236)
T PF14339_consen  216 AAT  218 (236)
T ss_pred             ccE
Confidence            877

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=92.00  E-value=6.6  Score=39.76  Aligned_cols=32  Identities=22%  Similarity=0.431  Sum_probs=21.4

Q ss_pred             EEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362           84 MKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        84 ~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia  115 (444)
                      .+.++|. | |.++. +..+|+++|+.++.++.+.
T Consensus       284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~  318 (417)
T TIGR02800       284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT  318 (417)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            3445553 4 44554 4559999999988877665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=91.80  E-value=5.5  Score=41.48  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             eeEEcCCCe-EEEEe--CCCCEEEEEECCCCcEEEeec
Q 013362           82 HLMKSEDDN-LLIIN--RSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        82 gL~~d~dG~-LYIAD--agnh~IrkIDl~tG~I~Tiag  116 (444)
                      ...+++||. |+++-  .++..||.+|+.+|.++.+..
T Consensus       250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~  287 (435)
T PRK05137        250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD  287 (435)
T ss_pred             CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC
Confidence            445677764 54443  356789999999998887764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.68  E-value=16  Score=36.79  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=84.2

Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeE
Q 013362            5 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLM   84 (444)
Q Consensus         5 GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~   84 (444)
                      +.++  .++.||+.+.. ..|..+|..+|.+.               |.+...   ..   -          ...   .+
T Consensus        60 ~p~v--~~~~v~v~~~~-g~v~a~d~~tG~~~---------------W~~~~~---~~---~----------~~~---p~  102 (377)
T TIGR03300        60 QPAV--AGGKVYAADAD-GTVVALDAETGKRL---------------WRVDLD---ER---L----------SGG---VG  102 (377)
T ss_pred             ceEE--ECCEEEEECCC-CeEEEEEccCCcEe---------------eeecCC---CC---c----------ccc---eE
Confidence            3455  35689998864 67999998777552               321100   00   0          111   23


Q ss_pred             EcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccc
Q 013362           85 KSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS  164 (444)
Q Consensus        85 ~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~S  164 (444)
                      +++ +.+|+.. .++.++.+|+.+|++.--.. ...      .                              .    .+
T Consensus       103 v~~-~~v~v~~-~~g~l~ald~~tG~~~W~~~-~~~------~------------------------------~----~~  139 (377)
T TIGR03300       103 ADG-GLVFVGT-EKGEVIALDAEDGKELWRAK-LSS------E------------------------------V----LS  139 (377)
T ss_pred             EcC-CEEEEEc-CCCEEEEEECCCCcEeeeec-cCc------e------------------------------e----ec
Confidence            444 7899876 46799999999998753221 000      0                              0    01


Q ss_pred             cccccCCeEEEEeCCCCeEEEEeCCCCeEE-EeeeccccccCCceeeeeccceeeecccccCCcccceeeeeecCCCeee
Q 013362          165 SSIAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRID  243 (444)
Q Consensus       165 gla~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pGri~  243 (444)
                      .....++.+|+. +.+..|..+|+++|.+. ++...+ ..+... ....|.   ...+..+.+....++..+++..|++.
T Consensus       140 ~p~v~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~~-~~~sp~---~~~~~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       140 PPLVANGLVVVR-TNDGRLTALDAATGERLWTYSRVT-PALTLR-GSASPV---IADGGVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             CCEEECCEEEEE-CCCCeEEEEEcCCCceeeEEccCC-Cceeec-CCCCCE---EECCEEEEECCCCEEEEEEccCCCEe
Confidence            112235566665 45677999999888752 222111 010000 001121   11122234444567888888888765


Q ss_pred             EEEeeeCC
Q 013362          244 IKVNVDIP  251 (444)
Q Consensus       244 i~v~v~~P  251 (444)
                      =+..+..|
T Consensus       214 W~~~~~~~  221 (377)
T TIGR03300       214 WEQRVALP  221 (377)
T ss_pred             eeeccccC
Confidence            44444334

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.58  E-value=0.9  Score=31.46  Aligned_cols=29  Identities=17%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             cCCCEEEEEeCCCCeEEEEECCCCeEEEe
Q 013362           10 KDDDCLYIVDSENHAIRRADMGRRVLETV   38 (444)
Q Consensus        10 ~~g~~LYVADTeNHaIRkIDl~tg~VtTV   38 (444)
                      ++++.|||++.+.+.|-.+|..++.+.--
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~   29 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT   29 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            46778999999999999999877755433

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK00178 tolB translocation protein TolB; Provisional

Probab=91.25  E-value=8.2  Score=39.79  Aligned_cols=32  Identities=13%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             EEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362           84 MKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        84 ~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia  115 (444)
                      .+++||. | |.++. ++.+|+++|+.+|.++.+.
T Consensus       293 ~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt  327 (430)
T PRK00178        293 FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT  327 (430)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            4555543 4 44554 4568999999999887665

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=91.23  E-value=0.58  Score=32.16  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=28.9

Q ss_pred             CCCcceeEEcCC-CeEEEEeCCCCEEEEEECCC
Q 013362           77 LIFPWHLMKSED-DNLLIINRSFETLWIMDLAS  108 (444)
Q Consensus        77 Ln~P~gL~~d~d-G~LYIADagnh~IrkIDl~t  108 (444)
                      +..|.+++++.. +.||.+|...+.|++.+++.
T Consensus         8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            889999999876 78999999999999999864

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=91.15  E-value=15  Score=40.47  Aligned_cols=137  Identities=18%  Similarity=0.239  Sum_probs=82.9

Q ss_pred             CCCcceeEEc---CC-CeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccc
Q 013362           77 LIFPWHLMKS---ED-DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSC  152 (444)
Q Consensus        77 Ln~P~gL~~d---~d-G~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~  152 (444)
                      +-+|.+|...   .+ ..+.|++.-...|-.+|..+|++..+-++.+.+-.            ++              .
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~a------------v~--------------v  409 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEA------------VK--------------V  409 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEE------------EE--------------E
Confidence            5555565542   11 35778888888899999998888887765544310            00              0


Q ss_pred             cccCCCcccccccccccCCeEEEEeCCCCeEEEEeCC-CCeEEEeeeccccccCCceeeeeccceeeecccccCCcccce
Q 013362          153 SLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE-SGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDH  231 (444)
Q Consensus       153 ~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~-tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~  231 (444)
                      ++.|- +    --++....+|++.|..|..++.+|.+ -|.++.|..+-.+-+   .++.+|           +|-+..+
T Consensus       410 s~dGK-~----~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~---iAYafP-----------~gy~tq~  470 (668)
T COG4946         410 SPDGK-K----VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW---IAYAFP-----------EGYYTQS  470 (668)
T ss_pred             cCCCc-E----EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee---EEEecC-----------cceeeee
Confidence            00110 0    00234455788888888888887765 456666655443321   122334           6667788


Q ss_pred             eeeeecCCCeeeEEEeeeCCCCcccccccc
Q 013362          232 IQRCSLLPGRIDIKVNVDIPSDTELVESLQ  261 (444)
Q Consensus       232 i~~v~~~pGri~i~v~v~~P~~~el~~p~~  261 (444)
                      |+=++...|+|-   .|+.|....-++-+-
T Consensus       471 Iklydm~~~Kiy---~vTT~ta~DfsPaFD  497 (668)
T COG4946         471 IKLYDMDGGKIY---DVTTPTAYDFSPAFD  497 (668)
T ss_pred             EEEEecCCCeEE---EecCCcccccCcccC
Confidence            888888888875   778888777665543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=91.05  E-value=22  Score=37.10  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=23.7

Q ss_pred             eeEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEeec
Q 013362           82 HLMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        82 gL~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tiag  116 (444)
                      ...+++||. | |.+|. +..+|+++|+.+|.++.+..
T Consensus       294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~  331 (435)
T PRK05137        294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF  331 (435)
T ss_pred             ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence            345666654 4 44443 45689999999888887763

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=90.70  E-value=11  Score=38.08  Aligned_cols=35  Identities=20%  Similarity=0.183  Sum_probs=22.9

Q ss_pred             ceeEEcCCCe-EEEEeCC--CCEEEEEECCCCcEEEee
Q 013362           81 WHLMKSEDDN-LLIINRS--FETLWIMDLASGEIKEAV  115 (444)
Q Consensus        81 ~gL~~d~dG~-LYIADag--nh~IrkIDl~tG~I~Tia  115 (444)
                      ..+.++++|. |+++...  ..+|+.+|+.++..+.+.
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence            4556676654 5554433  358999999988776554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02888 nitrous-oxide reductase; Validated

Probab=90.42  E-value=0.64  Score=51.94  Aligned_cols=85  Identities=8%  Similarity=-0.047  Sum_probs=60.7

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .+|.|++++|+|..+|++--...-|-.||+.+... -+++.=..             +.-...+         ...=..|
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~-~~~~~~~~-------------~~~vvae---------vevGlGP  377 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD-LFDGKIKP-------------RDAVVAE---------PELGLGP  377 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh-hhhccCCc-------------cceEEEe---------eccCCCc
Confidence            47999999999999999999999999999765432 12221000             0000000         0011348


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCC
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLAS  108 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~t  108 (444)
                      .+.+++++|+.|.+-.-..+|-|||+++
T Consensus       378 LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        378 LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            9999999999999999999999999875

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=90.35  E-value=1.1  Score=32.68  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=22.5

Q ss_pred             CEEEEEeCCCC-eEEEEECCCCeEEEec
Q 013362           13 DCLYIVDSENH-AIRRADMGRRVLETVY   39 (444)
Q Consensus        13 ~~LYVADTeNH-aIRkIDl~tg~VtTVA   39 (444)
                      +.||.+|...+ .|.+.++......++.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi   28 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVI   28 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEE
Confidence            37999999999 9999999766666665

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.44  E-value=3.1  Score=42.13  Aligned_cols=156  Identities=21%  Similarity=0.242  Sum_probs=79.2

Q ss_pred             CCcceeEEcCCCeEEEEeCCCC--EEEEEECCCCcEEEeec----CCccceeecceehhhhhhhhhcCCccccccc---c
Q 013362           78 IFPWHLMKSEDDNLLIINRSFE--TLWIMDLASGEIKEAVK----GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQ---I  148 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh--~IrkIDl~tG~I~Tiag----G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~---~  148 (444)
                      .+=.||.+..+|.||.+--..+  +||++|+.||++..-..    -+++..+..+.-+.    .|     -|-+..   .
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~----qL-----TWk~~~~f~y  115 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLY----QL-----TWKEGTGFVY  115 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEE----EE-----ESSSSEEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEE----EE-----EecCCeEEEE
Confidence            3457899866699999986555  89999999998754321    22222222221111    00     011000   0


Q ss_pred             c-ccccc-cCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCe-EEEeeeccccccCCceeeeeccceeeecccccC
Q 013362          149 D-SSCSL-KELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGV-CSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQ  225 (444)
Q Consensus       149 ~-~~~~~-~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~-vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~  225 (444)
                      + ..... .-+++...-=||+.++..||++|- +++|+.+|+++-. +.+++..   .-|.|...-.-||.+  .|..++
T Consensus       116 d~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~---~~g~pv~~LNELE~i--~G~IyA  189 (264)
T PF05096_consen  116 DPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDG-SSRLYFLDPETFKEVRTIQVT---DNGRPVSNLNELEYI--NGKIYA  189 (264)
T ss_dssp             ETTTTEEEEEEE-SSS--EEEECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-E---ETTEE---EEEEEEE--TTEEEE
T ss_pred             ccccceEEEEEecCCcceEEEcCCCEEEEECC-ccceEEECCcccceEEEEEEE---ECCEECCCcEeEEEE--cCEEEE
Confidence            0 00000 011211111257888889999996 8999999998753 3444432   234555444455554  221122


Q ss_pred             Ccc-cceeeeeecCCCeeeEEEee
Q 013362          226 GSW-TDHIQRCSLLPGRIDIKVNV  248 (444)
Q Consensus       226 g~~-~~~i~~v~~~pGri~i~v~v  248 (444)
                      --| .++|-++|+.+|+|.=.++.
T Consensus       190 NVW~td~I~~Idp~tG~V~~~iDl  213 (264)
T PF05096_consen  190 NVWQTDRIVRIDPETGKVVGWIDL  213 (264)
T ss_dssp             EETTSSEEEEEETTT-BEEEEEE-
T ss_pred             EeCCCCeEEEEeCCCCeEEEEEEh
Confidence            222 38899999999998855543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.83  E-value=32  Score=36.50  Aligned_cols=76  Identities=24%  Similarity=0.305  Sum_probs=52.6

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECC-C-CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMG-R-RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~-t-g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .+++|.+++. ..+.=+.-..||..|.. . ..+.|+-|-.                                   +...
T Consensus       207 ~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~-----------------------------------~~v~  250 (456)
T KOG0266|consen  207 SDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHS-----------------------------------TYVT  250 (456)
T ss_pred             eeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEecCCC-----------------------------------CceE
Confidence            3566766663 44445566777777763 3 2556665442                                   1225


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      .+++.++|+++++=.+.+.||.||..+|+.....
T Consensus       251 ~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l  284 (456)
T KOG0266|consen  251 SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL  284 (456)
T ss_pred             EEEecCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence            7888888999999999999999999998765444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=88.52  E-value=15  Score=38.30  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=23.2

Q ss_pred             eeEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia  115 (444)
                      ...+++||. | |.+|. +.-+||.+++.+|..+.+.
T Consensus       288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt  324 (427)
T PRK02889        288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT  324 (427)
T ss_pred             CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence            345777764 4 45554 5679999999888776554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=88.11  E-value=23  Score=37.33  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=50.7

Q ss_pred             eeEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           82 HLMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        82 gL~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      ...+++||. | |+++. +..+|+.+|+.+|+.+.+..+.....                 ...|               
T Consensus       331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~-----------------~p~w---------------  378 (428)
T PRK01029        331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKE-----------------SPSW---------------  378 (428)
T ss_pred             ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCcc-----------------ceEE---------------
Confidence            344666664 4 34443 45689999999999887764211000                 0011               


Q ss_pred             cccccccccccCCeEEEE-eC-CCCeEEEEeCCCCeEEEeeeccccccCCceeee
Q 013362          159 YAGLISSSIAFQNHILLC-DI-VGQRIMRLNRESGVCSNFQFSNFAILGLPYWFA  211 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIA-DT-~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~  211 (444)
                              +.++..|+++ .. ....|..+++.++....+. .+.|....|.|--
T Consensus       379 --------SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~  424 (428)
T PRK01029        379 --------AIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGA  424 (428)
T ss_pred             --------CCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecC
Confidence                    1234445443 22 3467888888888777664 3445666788753

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=87.27  E-value=5.8  Score=44.18  Aligned_cols=79  Identities=14%  Similarity=0.030  Sum_probs=48.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeE----------------EEEECCCC-------eEEEe--ccCCCcCccCCcchhhhh
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAI----------------RRADMGRR-------VLETV--YPTSGISKKNNSLWAWIM   56 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaI----------------RkIDl~tg-------~VtTV--AGtG~~~~~~~~l~g~~~   56 (444)
                      ||-+|++++....+|++.|.|.+-                -|+-..++       +-+.+  +|.+..            
T Consensus       418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~------------  485 (616)
T COG3211         418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSV------------  485 (616)
T ss_pred             CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccc------------
Confidence            799999999988999999988732                22223333       22222  122111            


Q ss_pred             cccCcccccCccccCCCCCCCCCcceeEEcCCCeEEEEeCCCC
Q 013362           57 EKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE   99 (444)
Q Consensus        57 ~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~LYIADagnh   99 (444)
                      -+ +.+      ++.-+...|++|=+|++|+.|.|||+--++.
T Consensus       486 ~~-~~~------~~~~~~~~f~~PDnl~fD~~GrLWi~TDg~~  521 (616)
T COG3211         486 LE-GGA------SANINANWFNSPDNLAFDPWGRLWIQTDGSG  521 (616)
T ss_pred             cc-ccc------ccCcccccccCCCceEECCCCCEEEEecCCC
Confidence            00 100      1112235699999999999999999865543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.86  E-value=12  Score=40.82  Aligned_cols=76  Identities=11%  Similarity=0.017  Sum_probs=45.0

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362           12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL   91 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L   91 (444)
                      ++.|||++..+ .|+.+|..+|.+.               |.+............       .. -....++++.+ +.+
T Consensus        69 ~g~vyv~s~~g-~v~AlDa~TGk~l---------------W~~~~~~~~~~~~~~-------~~-~~~~rg~av~~-~~v  123 (527)
T TIGR03075        69 DGVMYVTTSYS-RVYALDAKTGKEL---------------WKYDPKLPDDVIPVM-------CC-DVVNRGVALYD-GKV  123 (527)
T ss_pred             CCEEEEECCCC-cEEEEECCCCcee---------------eEecCCCCccccccc-------cc-ccccccceEEC-CEE
Confidence            45899998866 5999998877542               322210000000000       00 00124566665 789


Q ss_pred             EEEeCCCCEEEEEECCCCcEEE
Q 013362           92 LIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        92 YIADagnh~IrkIDl~tG~I~T  113 (444)
                      |+++. ..++..+|..||++.-
T Consensus       124 ~v~t~-dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075       124 FFGTL-DARLVALDAKTGKVVW  144 (527)
T ss_pred             EEEcC-CCEEEEEECCCCCEEe
Confidence            99874 5689999999998753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=86.72  E-value=20  Score=37.41  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=21.8

Q ss_pred             ceeEEcCCCe-EE-EEeC-CCCEEEEEECCCCcEEEe
Q 013362           81 WHLMKSEDDN-LL-IINR-SFETLWIMDLASGEIKEA  114 (444)
Q Consensus        81 ~gL~~d~dG~-LY-IADa-gnh~IrkIDl~tG~I~Ti  114 (444)
                      ....+++||. |+ .++. ++-+||.++..++..+.+
T Consensus       295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            3456777765 44 4443 567999999877766443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=86.69  E-value=22  Score=31.37  Aligned_cols=32  Identities=19%  Similarity=0.168  Sum_probs=24.1

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      +..+.+.+++.++++-..++.|+.+|+.+++.
T Consensus       138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  169 (289)
T cd00200         138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC  169 (289)
T ss_pred             EEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence            56777887767777766688999999876654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.55  E-value=2.6  Score=43.50  Aligned_cols=68  Identities=19%  Similarity=0.339  Sum_probs=52.2

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      +|+.||+..+.|+|---|.+++-.+|+.-..+..+.=++.              ..|+.  ..          +..|-||
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g--------------~~gL~--~d----------ipqaEGi  289 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKG--------------NHGLS--SD----------IPQAEGI  289 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccC--------------CCCCc--cc----------CCCccee
Confidence            6899998888999999999999999986665666654421              12332  23          7778999


Q ss_pred             EEcCCCeEEEEeCC
Q 013362           84 MKSEDDNLLIINRS   97 (444)
Q Consensus        84 ~~d~dG~LYIADag   97 (444)
                      +.|++|+|||.---
T Consensus       290 amDd~g~lYIvSEP  303 (316)
T COG3204         290 AMDDDGNLYIVSEP  303 (316)
T ss_pred             EECCCCCEEEEecC
Confidence            99999999998643

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.44  E-value=5.2  Score=40.60  Aligned_cols=83  Identities=20%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             CcceEEEecCCCEEEEEeCCC------CeEEEEECCCCeE-EEe-ccCCCcCccCCcchhhhhcccC-cccccCccccCC
Q 013362            2 RPAASFYHKDDDCLYIVDSEN------HAIRRADMGRRVL-ETV-YPTSGISKKNNSLWAWIMEKLG-FERDNDTKSEKL   72 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeN------HaIRkIDl~tg~V-tTV-AGtG~~~~~~~~l~g~~~~~~G-~a~~a~~~~~~~   72 (444)
                      .|-||++.++| .+||++-+.      |+|+++++. |.+ ..+ .+..-.           ....+ .....       
T Consensus        86 D~Egi~~~~~g-~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~-----------~~~~~~~~~~~-------  145 (326)
T PF13449_consen   86 DPEGIAVPPDG-SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFL-----------PDANGTSGRRN-------  145 (326)
T ss_pred             ChhHeEEecCC-CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccc-----------cccCccccccC-------
Confidence            46699995554 799999999      999999976 555 444 222111           00000 00000       


Q ss_pred             CCCCCCCcceeEEcCCCe-EEEEeCCC---------------CEEEEEECCC
Q 013362           73 DPQSLIFPWHLMKSEDDN-LLIINRSF---------------ETLWIMDLAS  108 (444)
Q Consensus        73 ~~~~Ln~P~gL~~d~dG~-LYIADagn---------------h~IrkIDl~t  108 (444)
                          =...-+|++.++|. ||++.-..               .+|.++|+.+
T Consensus       146 ----N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~  193 (326)
T PF13449_consen  146 ----NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKT  193 (326)
T ss_pred             ----CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCC
Confidence                12246888888877 88887655               5677777665

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.43  E-value=6.8  Score=39.15  Aligned_cols=153  Identities=18%  Similarity=0.176  Sum_probs=81.2

Q ss_pred             ceEEEecCCCEEEEEe--CCCCeEEEEECCCCeEE---Eec-----cCCCcCccCCcchhhhhcccCcccccCccccCC-
Q 013362            4 AASFYHKDDDCLYIVD--SENHAIRRADMGRRVLE---TVY-----PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKL-   72 (444)
Q Consensus         4 ~GIa~D~~g~~LYVAD--TeNHaIRkIDl~tg~Vt---TVA-----GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~-   72 (444)
                      ||+.++  ++.+|..-  .++++||+-|+.+|.+.   +++     |.|-. +-++.+|-.. =+.|.|-.-.  +..| 
T Consensus        49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-~~gd~~y~LT-w~egvaf~~d--~~t~~  122 (262)
T COG3823          49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-KLGDYFYQLT-WKEGVAFKYD--ADTLE  122 (262)
T ss_pred             cceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCcccccccee-eccceEEEEE-eccceeEEEC--hHHhh
Confidence            688884  44676654  38999999999988764   344     33322 2223333211 1123321000  0001 


Q ss_pred             CCCCCCC---cceeEEcCCCeEEEEeCCCCEEEEEECCCC-cEEEeecCCccceeecceehhhhhhhhhcCCcccccccc
Q 013362           73 DPQSLIF---PWHLMKSEDDNLLIINRSFETLWIMDLASG-EIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQI  148 (444)
Q Consensus        73 ~~~~Ln~---P~gL~~d~dG~LYIADagnh~IrkIDl~tG-~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~  148 (444)
                      .-.++++   =|||+.|+ .+|..+| |+..++.-||++= ++.++-      .+..|.++.    -             
T Consensus       123 ~lg~~~y~GeGWgLt~d~-~~Limsd-GsatL~frdP~tfa~~~~v~------VT~~g~pv~----~-------------  177 (262)
T COG3823         123 ELGRFSYEGEGWGLTSDD-KNLIMSD-GSATLQFRDPKTFAELDTVQ------VTDDGVPVS----K-------------  177 (262)
T ss_pred             hhcccccCCcceeeecCC-cceEeeC-CceEEEecCHHHhhhcceEE------EEECCeecc----c-------------
Confidence            0112444   48999888 4665554 8889999998752 122221      111222211    0             


Q ss_pred             cccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE-eeeccc
Q 013362          149 DSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN-FQFSNF  201 (444)
Q Consensus       149 ~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST-~~fsg~  201 (444)
                                    +.-|--.++.||--==...||.|+++++|.|.. +..||.
T Consensus       178 --------------LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L  217 (262)
T COG3823         178 --------------LNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGL  217 (262)
T ss_pred             --------------ccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCC
Confidence                          111223455666554556789999999999865 455553

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=84.87  E-value=23  Score=37.78  Aligned_cols=49  Identities=16%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             CeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc---cccCCccc---ceeeeee
Q 013362          181 QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA---GGHQGSWT---DHIQRCS  236 (444)
Q Consensus       181 hRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~---~~~~g~~~---~~i~~v~  236 (444)
                      .||++||++||...++       +--+.|+.+++-.+++.+   .+++|-+.   +||=-++
T Consensus       168 ~~i~~idl~tG~~~~v-------~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVV-------FEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN  222 (386)
T ss_dssp             EEEEEEETTT--EEEE-------EEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred             ceEEEEECCCCceeEE-------EecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence            6899999999999886       334678888777766555   55677665   3565555

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=83.64  E-value=22  Score=38.10  Aligned_cols=76  Identities=12%  Similarity=0.032  Sum_probs=44.9

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362           12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL   91 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L   91 (444)
                      ++.||+.+.. +.|+.+|+.+|.+.               |.+..........         +..+..  ++++.+++.+
T Consensus        61 ~g~vy~~~~~-g~l~AlD~~tG~~~---------------W~~~~~~~~~~~~---------~~~~~~--g~~~~~~~~V  113 (488)
T cd00216          61 DGDMYFTTSH-SALFALDAATGKVL---------------WRYDPKLPADRGC---------CDVVNR--GVAYWDPRKV  113 (488)
T ss_pred             CCEEEEeCCC-CcEEEEECCCChhh---------------ceeCCCCCccccc---------cccccC--CcEEccCCeE
Confidence            4589999874 78999998777442               3322110000000         000222  2344333789


Q ss_pred             EEEeCCCCEEEEEECCCCcEEEee
Q 013362           92 LIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        92 YIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      |+++ ..+.|+.+|+.||++.--.
T Consensus       114 ~v~~-~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216         114 FFGT-FDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             EEec-CCCeEEEEECCCCCEeeee
Confidence            9887 4679999999999876544

The alignment model contains an 8-bladed beta-propeller.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=82.52  E-value=41  Score=35.63  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=21.9

Q ss_pred             EEcCCCe--EEEEeCC-------CCEEEEEECCCCcEEEeec
Q 013362           84 MKSEDDN--LLIINRS-------FETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        84 ~~d~dG~--LYIADag-------nh~IrkIDl~tG~I~Tiag  116 (444)
                      .++++|.  +|++...       ...|+.+|+++|..+.+..
T Consensus       325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~  366 (419)
T PRK04043        325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA  366 (419)
T ss_pred             eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence            4555543  4555443       2589999999998877664

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.35  E-value=66  Score=33.57  Aligned_cols=180  Identities=16%  Similarity=0.141  Sum_probs=99.2

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      ++++|+|+.+.||..=-.--.|-.++..-..+.|+.=+|                                  +.-|-+|
T Consensus        89 S~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g----------------------------------~~DpE~I  134 (316)
T COG3204          89 SSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----------------------------------FSDPETI  134 (316)
T ss_pred             cceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc----------------------------------cCChhHe
Confidence            689999999999988777778888887666777775443                                  4457788


Q ss_pred             EEcCCCeEEEEeCCCCEEEEEECCCC--cEEEee-----cCCcc---ceeecc-eehhhhhhhhh-cCCccccccccc--
Q 013362           84 MKSEDDNLLIINRSFETLWIMDLASG--EIKEAV-----KGFSK---VLEICG-VLVMEKVFLLK-QMPQDWLLHQID--  149 (444)
Q Consensus        84 ~~d~dG~LYIADagnh~IrkIDl~tG--~I~Tia-----gG~~~---~~~~~G-~li~~~~a~l~-~~~~~~~~~~~~--  149 (444)
                      .+.++|.+-|+|-.-.++.++-.+.+  .+..-.     +...+   +.++-. .....++-..| ..|+..++-+..  
T Consensus       135 eyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~  214 (316)
T COG3204         135 EYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS  214 (316)
T ss_pred             EEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc
Confidence            88888888899998888887655433  332211     11111   111000 00000000011 112222221100  


Q ss_pred             -ccccccCCCccc------cccccccc--CCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceee
Q 013362          150 -SSCSLKELPYAG------LISSSIAF--QNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVY  218 (444)
Q Consensus       150 -~~~~~~Gip~a~------~~Sgla~~--~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~  218 (444)
                       ........|.+.      -+||+...  .++|+|--.+.+++..+|+++..++.+-..+ |.-|+......|=++++
T Consensus       215 ~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~-g~~gL~~dipqaEGiam  291 (316)
T COG3204         215 SLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK-GNHGLSSDIPQAEGIAM  291 (316)
T ss_pred             ccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc-CCCCCcccCCCcceeEE
Confidence             000111122222      26665544  6789999999999999999988777763222 33344444444433333

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=82.08  E-value=35  Score=30.03  Aligned_cols=70  Identities=20%  Similarity=0.171  Sum_probs=44.8

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..++++++++.|+++. .++.|+..++.++.. .++.+..                                   .....
T Consensus        13 ~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~-----------------------------------~~i~~   56 (289)
T cd00200          13 TCVAFSPDGKLLATGS-GDGTIKVWDLETGELLRTLKGHT-----------------------------------GPVRD   56 (289)
T ss_pred             EEEEEcCCCCEEEEee-cCcEEEEEEeeCCCcEEEEecCC-----------------------------------cceeE
Confidence            5788988887666665 478899998876532 2221110                                   00135


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCC
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASG  109 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG  109 (444)
                      +.+.+++..+++-..++.|+.+|+.++
T Consensus        57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200          57 VAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            666666655555556889999999875

>PTZ00421 coronin; Provisional

Probab=82.04  E-value=51  Score=35.87  Aligned_cols=32  Identities=13%  Similarity=0.002  Sum_probs=24.3

Q ss_pred             ceeEEcCC-CeEEEEeCCCCEEEEEECCCCcEE
Q 013362           81 WHLMKSED-DNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        81 ~gL~~d~d-G~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      +.|++.++ ++++++=...+.|+.||+.++...
T Consensus       129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~  161 (493)
T PTZ00421        129 GIVSFHPSAMNVLASAGADMVVNVWDVERGKAV  161 (493)
T ss_pred             EEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE
Confidence            46777765 357777778899999999988654

>PTZ00420 coronin; Provisional

Probab=81.19  E-value=93  Score=34.77  Aligned_cols=32  Identities=25%  Similarity=0.101  Sum_probs=26.8

Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ..+.++.+|.++++-...++|+.||+.+|.+.
T Consensus       171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             EEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence            56778888999888778889999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	444
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 58/454 (12%), Positives = 126/454 (27%), Gaps = 137/454 (30%)

Query: 10  KDDDCLYIVDSENHAIRRADMG------------RRVLETV--YPTSGISK------KNN 49
            + DC  + D     + + ++              R+  T+       + K      + N
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 50  SLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE--TLWIMDLA 107
             + ++M  +        K+E+  P        +   + D L   N+ F    +  +   
Sbjct: 91  --YKFLMSPI--------KTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 108 SGEIKEAVKGFSKVLEI-------CG--VLVMEKVF---LLKQMPQD--WL-LHQIDSSC 152
             ++++A+        +        G   + ++      +  +M     WL L   +S  
Sbjct: 138 L-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 153 SLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF 212
           ++ E+            Q    L   +       +R     +     +     L      
Sbjct: 197 TVLEM-----------LQK---LLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLK- 239

Query: 213 PLERVYAVAGGHQGSWTDHIQRCSLLPGRI-DIKVNVDIPSDTELVESLQEGCIWRQARG 271
              + Y              + C LL   +     NV    + +   +    C       
Sbjct: 240 --SKPY--------------ENC-LL---VLL---NV---QNAKAWNAFNLSC------- 266

Query: 272 TASVVLRAEDVAGSLEKVGVAQLWYDELDTLALSTPESESNIED--ETTTSDLRSEDDTV 329
              +  R + V   L       +  D    + L+  E +S +    +    DL  E    
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCRPQDLPRE---- 321

Query: 330 HIDCAVNTSPGTSEVIISAALYLKLRRYPDQQDDGREKYAARISDILKLGRSGAMQRDSF 389
                + T+P    +I  A     +R      D+ +     +++ I++          S 
Sbjct: 322 ----VLTTNPRRLSII--AES---IRDGLATWDNWKHVNCDKLTTIIE----------SS 362

Query: 390 IRFLLKSNQDLRD-----VIFVKPLHVSIQFDTL 418
           +  L     + R       +F  P    I    L
Sbjct: 363 LNVL--EPAEYRKMFDRLSVF--PPSAHIPTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 55/431 (12%), Positives = 119/431 (27%), Gaps = 123/431 (28%)

Query: 55  IMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD-LASGEIKE 113
           +++KL ++ D +  S      ++    H +++E   LL        L ++  + + +   
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 114 AVKGFSKVL------EICGVLVMEKVFLLKQMPQDWLLHQIDS--------SCSLKELPY 159
           A     K+L      ++   L       +        L   +          C  ++LP 
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP- 319

Query: 160 AGLISSSIAFQNHILLCDIVGQRI----MRLNRESGVCSNFQFSNF----AILGLPYWFA 211
                       +     I+ + I       +       N++  N      I+       
Sbjct: 320 ------REVLTTNPRRLSIIAESIRDGLATWD-------NWKHVNCDKLTTIIESSLNVL 366

Query: 212 FPLE--RVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQA 269
            P E  +++               R S+ P       +  IP+       L    IW   
Sbjct: 367 EPAEYRKMF--------------DRLSVFP------PSAHIPTIL-----LS--LIWFD- 398

Query: 270 RGTASVVLRAEDVAGSLEKVGVAQLWYDE----LDTLALSTPESESN--------IEDET 317
               S V     V   L K  + +    E    + ++ L       N        ++   
Sbjct: 399 -VIKSDV---MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 318 TTSDLRSEDDTV-------------HIDCAVNTSPGTSEVIISAALYLKLR------RYP 358
                 S+D                H+    +       + +   ++L  R      R+ 
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH----PERMTLFRMVFLDFRFLEQKIRHD 510

Query: 359 DQQDDGR----------EKYAARISDILKLGRSGAMQR--DSFIRFLLKSNQDLRDVIFV 406
               +            + Y   I D          +R  ++ + FL K  ++L    + 
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICD-----NDPKYERLVNAILDFLPKIEENLICSKYT 565

Query: 407 KPLHVSIQFDT 417
             L +++  + 
Sbjct: 566 DLLRIALMAED 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	444
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.84
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.76
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.76
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.73
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.7
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.69
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.63
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.58
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.58
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.57
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.54
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.5
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.48
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.47
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.46
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.44
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.43
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.43
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.41
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.35
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.34
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.25
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.25
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.24
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.22
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.21
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.18
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.15
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.14
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.06
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.05
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.04
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.04
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.94
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.94
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.9
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.89
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.88
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.85
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.79
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.69
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.58
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.55
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.54
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.53
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.5
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.48
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.47
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.47
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.46
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.46
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.42
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.41
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.39
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.31
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.29
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.28
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.28
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.26
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.26
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.25
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.25
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.23
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.23
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.2
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.17
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.15
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.14
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.13
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.09
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.08
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.98
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.94
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.86
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.82
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.79
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.72
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.66
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.61
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.59
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.51
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.46
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.45
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.37
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.3
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.29
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.23
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.96
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.86
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.84
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.72
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.58
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.58
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.56
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.53
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.45
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.41
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.36
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.95
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.86
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.73
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.72
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.63
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	95.62
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.4
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.32
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.29
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.24
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.16
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.09
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.81
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.49
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	94.06
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.01
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	93.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	93.57
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.57
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	93.43
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	93.4
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	93.27
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.19
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	93.19
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	93.09
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	92.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	92.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	92.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	92.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	92.82
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.67
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.6
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.6
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	92.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	92.46
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	92.45
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	92.3
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.29
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.28
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	92.25
3ow8_A	321	WD repeat-containing protein 61; structural genomi	92.12
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	91.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	91.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	91.42
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	91.28
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	91.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	91.15
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	91.06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	90.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	90.78
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	90.65
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	90.61
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	90.54
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	90.19
3ott_A	758	Two-component system sensor histidine kinase; beta	90.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	90.07
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	89.99
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	89.91
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	89.8
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	89.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	89.65
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	89.59
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	89.52
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	89.39
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	89.38
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	89.32
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	89.29
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	89.28
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	89.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.96
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	88.6
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	88.57
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	88.55
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	88.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	88.08
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	87.42
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	87.41
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	87.23
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	87.16
3ow8_A	321	WD repeat-containing protein 61; structural genomi	87.12
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	86.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	86.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	86.28
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	86.2
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	85.99
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	85.58
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	85.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	85.41
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	85.25
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	85.17
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	85.08
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	84.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	84.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	84.53
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	84.36
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	84.08
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	83.89
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.87
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.58
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	83.54
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	83.52
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	83.39
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	83.01
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	82.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	82.92
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	82.84
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	82.8
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	82.14
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	81.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	81.17
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	81.12
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	81.01
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	80.99
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	80.92
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	80.77
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	80.58

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=2.3e-20  Score=195.59  Aligned_cols=147  Identities=14%  Similarity=0.118  Sum_probs=107.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEC--CCCeE---EEeccC-CCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADM--GRRVL---ETVYPT-SGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl--~tg~V---tTVAGt-G~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      .|.+||++++|+.|||||+.||+|||+++  .++.+   +|+||+ |..        ||.   +|++..|+         
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~--------G~~---DG~~~~a~---------  370 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS--------GYR---DDVGTEAR---------  370 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC--------CCB---CCBGGGCB---------
T ss_pred             CceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC--------ccc---CCcccccc---------
Confidence            48899999999889999999999999775  45565   799998 544        333   47888888         


Q ss_pred             CCCCcc-eeEEc-------CCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccc----eeecceehhhhhhhhhcCCccc
Q 013362           76 SLIFPW-HLMKS-------EDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKV----LEICGVLVMEKVFLLKQMPQDW  143 (444)
Q Consensus        76 ~Ln~P~-gL~~d-------~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~----~~~~G~li~~~~a~l~~~~~~~  143 (444)
                       |++|+ +++++       .+|+|||||++||+||+|++ +|.|+|++|.....    ...+|.                
T Consensus       371 -f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~----------------  432 (496)
T 3kya_A          371 -MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGT----------------  432 (496)
T ss_dssp             -CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCC----------------
T ss_pred             -cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCcccccc----------------
Confidence             99999 88887       56899999999999999995 69999999732210    000010                


Q ss_pred             ccccccccccccCCCccccccccccc--CCeEEEEeCCCCeEEEEeCCCCe
Q 013362          144 LLHQIDSSCSLKELPYAGLISSSIAF--QNHILLCDIVGQRIMRLNRESGV  192 (444)
Q Consensus       144 ~~~~~~~~~~~~Gip~a~~~Sgla~~--~~~LyIADT~nhRIRkvdl~tG~  192 (444)
                      .    ++.  +...+....|.+|+..  ++.|||||+.||||||++++...
T Consensus       433 ~----dG~--~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          433 D----DGD--LREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             C----CEE--TTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             C----CCC--chhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence            0    000  0011112236677765  37999999999999999987543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=5.3e-18  Score=177.77  Aligned_cols=191  Identities=12%  Similarity=-0.013  Sum_probs=129.2

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECC-------CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCC
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMG-------RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLD   73 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-------tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~   73 (444)
                      .+|.|+++|++++.|||+|.++++|.|+|+.       ++.+.|-......   +  .  +  ..  ......       
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~---g--~--~--~~--l~~~~~-------  308 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP---N--T--F--KQ--LFTIAD-------  308 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT---T--T--E--EE--EEECSS-------
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc---c--c--c--ce--eEecCC-------
Confidence            3799999999778999999999999999997       6766332111000   0  0  0  00  000001       


Q ss_pred             CCCCCCcceeEEcCCCe-EEEEeCCCCEEEEEEC--CCCcE---EEeecCCccceeecceehhhhhhhhhcCCccccccc
Q 013362           74 PQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDL--ASGEI---KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQ  147 (444)
Q Consensus        74 ~~~Ln~P~gL~~d~dG~-LYIADagnh~IrkIDl--~tG~I---~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~  147 (444)
                         -..|.+|+++++|+ |||||+++|+||++|+  .++.+   ++++|......-.+|.      +.            
T Consensus       309 ---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~------~~------------  367 (496)
T 3kya_A          309 ---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDV------GT------------  367 (496)
T ss_dssp             ---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCB------GG------------
T ss_pred             ---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCc------cc------------
Confidence               34588999999987 9999999999999765  44555   6777621110000110      00            


Q ss_pred             ccccccccCCCcccccc-cccc--------cCCeEEEEeCCCCeEEEEeCCCCeEEEeeecc--------------cccc
Q 013362          148 IDSSCSLKELPYAGLIS-SSIA--------FQNHILLCDIVGQRIMRLNRESGVCSNFQFSN--------------FAIL  204 (444)
Q Consensus       148 ~~~~~~~~Gip~a~~~S-gla~--------~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg--------------~g~l  204 (444)
                          .+.     ...|. +++.        ..++|||||+.|||||+++ .+|.++||.-.+              .|.+
T Consensus       368 ----~a~-----f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~  437 (496)
T 3kya_A          368 ----EAR-----MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDL  437 (496)
T ss_dssp             ----GCB-----CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEET
T ss_pred             ----ccc-----cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCc
Confidence                001     11234 3444        3579999999999999999 578999996442              2346


Q ss_pred             CCceeeeeccceeeec--c-cccCCcccceeeeeecCCC
Q 013362          205 GLPYWFAFPLERVYAV--A-GGHQGSWTDHIQRCSLLPG  240 (444)
Q Consensus       205 g~P~~l~~PL~~v~~~--~-~~~~g~~~~~i~~v~~~pG  240 (444)
                      ...+.|+.|..++++.  + .+++|+.||+||+|++...
T Consensus       438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            7788999999999986  3 5679999999999987544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.76  E-value=3.1e-18  Score=173.95  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=103.0

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECC--CC---eEEEeccC-CCcCccCCcchhhhhcccCcccccCccccCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMG--RR---VLETVYPT-SGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS   76 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg---~VtTVAGt-G~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~   76 (444)
                      |.+|+++++++.|||+|+.||+|+++++.  ++   .+.+++|. |..        +|.   +|++..+.          
T Consensus       275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~--------g~~---dg~~~~a~----------  333 (433)
T 4hw6_A          275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP--------GWV---DGMGTGAR----------  333 (433)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC--------CCB---CEEGGGSB----------
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC--------ccC---CCcccceE----------
Confidence            56899999998899999999999999865  44   35689987 533        332   46666666          


Q ss_pred             CCCcceeEE---------cCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCcc--ceeecceehhhhhhhhhcCCccccc
Q 013362           77 LIFPWHLMK---------SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSK--VLEICGVLVMEKVFLLKQMPQDWLL  145 (444)
Q Consensus        77 Ln~P~gL~~---------d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~--~~~~~G~li~~~~a~l~~~~~~~~~  145 (444)
                      |++|+++++         +.+|+|||||++||+||++++ +|.+++++|....  ....+|.+     +           
T Consensus       334 ~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~-----~-----------  396 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGEL-----R-----------  396 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEET-----T-----------
T ss_pred             EcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCcc-----c-----------
Confidence            999999999         888999999999999999997 6999999963210  00001100     0           


Q ss_pred             ccccccccccCCCccccccccccc--CCeEEEEeCCCCeEEEEeCC
Q 013362          146 HQIDSSCSLKELPYAGLISSSIAF--QNHILLCDIVGQRIMRLNRE  189 (444)
Q Consensus       146 ~~~~~~~~~~Gip~a~~~Sgla~~--~~~LyIADT~nhRIRkvdl~  189 (444)
                                ..+....|.+|+..  ++.|||||+.|||||||+++
T Consensus       397 ----------~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          397 ----------SQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ----------TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ----------cccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                      00011225566655  78999999999999999875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.74  E-value=2e-17  Score=167.99  Aligned_cols=176  Identities=13%  Similarity=0.056  Sum_probs=124.6

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .+|.|+++|+.++.|||+|..||+|+++|+.+|.+ +++...+.                                 ...
T Consensus       228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---------------------------------~~~  274 (433)
T 4hw6_A          228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---------------------------------KGS  274 (433)
T ss_dssp             SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---------------------------------CSS
T ss_pred             CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---------------------------------CCC
Confidence            37999999995568999999999999999988888 55543321                                 112


Q ss_pred             cceeEEcCCCe-EEEEeCCCCEEEEEECC--CCc---EEEeecCCccceeecceehhhhhhhhhcCCccccccccccccc
Q 013362           80 PWHLMKSEDDN-LLIINRSFETLWIMDLA--SGE---IKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS  153 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagnh~IrkIDl~--tG~---I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~  153 (444)
                      |.+|+++++|+ |||+|+++|+|++++++  ++.   +.++++......-..|.      +                ...
T Consensus       275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~------~----------------~~a  332 (433)
T 4hw6_A          275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGM------G----------------TGA  332 (433)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEE------G----------------GGS
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCc------c----------------cce
Confidence            45799999886 99999999999998865  454   34666521110000010      0                000


Q ss_pred             ccCCCcccccccccc----------cCCeEEEEeCCCCeEEEEeCCCCeEEEeeecc--------ccccCCceeeeeccc
Q 013362          154 LKELPYAGLISSSIA----------FQNHILLCDIVGQRIMRLNRESGVCSNFQFSN--------FAILGLPYWFAFPLE  215 (444)
Q Consensus       154 ~~Gip~a~~~Sgla~----------~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg--------~g~lg~P~~l~~PL~  215 (444)
                      .     ...|.+++.          ..++|||||+.|||||+++. +|.++++.-.+        .|.+...+.|+.|..
T Consensus       333 ~-----~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~g  406 (433)
T 4hw6_A          333 R-----LWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTS  406 (433)
T ss_dssp             B-----CSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEE
T ss_pred             E-----EcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcE
Confidence            0     111344443          56789999999999999996 68898885332        234667788999999


Q ss_pred             eeee--cc-cccCCcccceeeeeec
Q 013362          216 RVYA--VA-GGHQGSWTDHIQRCSL  237 (444)
Q Consensus       216 ~v~~--~~-~~~~g~~~~~i~~v~~  237 (444)
                      ++++  .+ .+++|+.+|+||++++
T Consensus       407 iavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          407 IAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEec
Confidence            9998  33 5579999999999975

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.73  E-value=6.6e-17  Score=161.86  Aligned_cols=139  Identities=15%  Similarity=0.131  Sum_probs=103.7

Q ss_pred             cc-eEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PA-ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~-GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      |. ||+++++++.|||+|+.||+|+++++ ++.+.+++|.+..  .     +|   .+|++..+.          |+.|.
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~-~g~~~~~~g~~~~--~-----g~---~dg~~~~~~----------~~~P~  326 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITP-DGECEWFCGSATQ--K-----TV---QDGLREEAL----------FAQPN  326 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECTTC--C-----SC---BCEEGGGCB----------CSSEE
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEec-CCCEEEEEeCCCC--C-----Cc---CCCcccccE----------eCCCe
Confidence            77 99999977799999999999999996 5669999998622  0     22   245666666          99999


Q ss_pred             eeEEcCCCeEEEEeC-CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           82 HLMKSEDDNLLIINR-SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        82 gL~~d~dG~LYIADa-gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      +|+++++|+|||||+ ++|+|+++|+.+|.++++++.........|.                      .     ..+..
T Consensus       327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~----------------------~-----~~~~~  379 (409)
T 3hrp_A          327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGT----------------------P-----LEATF  379 (409)
T ss_dssp             EEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBS----------------------T-----TTCCB
T ss_pred             EEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCC----------------------h-----hceEe
Confidence            999999999999999 9999999998899999999631110000000                      0     00011


Q ss_pred             ccccccccc-CCeEEEEeCCCCeEEEEeCC
Q 013362          161 GLISSSIAF-QNHILLCDIVGQRIMRLNRE  189 (444)
Q Consensus       161 ~~~Sgla~~-~~~LyIADT~nhRIRkvdl~  189 (444)
                      ..|.+++.. .+.|||||..||||||++++
T Consensus       380 ~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          380 NYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             SSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            224555544 48999999999999999863

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.9e-16  Score=160.24  Aligned_cols=176  Identities=14%  Similarity=0.036  Sum_probs=125.5

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .+|.|+++|++++.|||+|..+|+|+++++.++.+.++...+                       .          ...|
T Consensus       226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-----------------------~----------~~~P  272 (430)
T 3tc9_A          226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-----------------------D----------SGWE  272 (430)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-----------------------S----------SSCC
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-----------------------C----------CCcc
Confidence            379999999955689999999999999999887775553221                       1          3468


Q ss_pred             ceeEEcCCCe-EEEEeCCCCEEEEEECCC--Cc---EEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362           81 WHLMKSEDDN-LLIINRSFETLWIMDLAS--GE---IKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL  154 (444)
Q Consensus        81 ~gL~~d~dG~-LYIADagnh~IrkIDl~t--G~---I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~  154 (444)
                      .+|+++++|+ |||+|..+|+|++++.+.  +.   +.++++......-..|.      +                ....
T Consensus       273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~------~----------------~~a~  330 (430)
T 3tc9_A          273 FHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGV------G----------------KKAR  330 (430)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEE------G----------------GGCB
T ss_pred             eeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCC------C----------------cceE
Confidence            9999999987 999999999999988753  33   45666521110000010      0                0000


Q ss_pred             cCCCcccccc-cccc---------cCCeEEEEeCCCCeEEEEeCCCCeEEEeeec------c--ccccCCceeeeeccce
Q 013362          155 KELPYAGLIS-SSIA---------FQNHILLCDIVGQRIMRLNRESGVCSNFQFS------N--FAILGLPYWFAFPLER  216 (444)
Q Consensus       155 ~Gip~a~~~S-gla~---------~~~~LyIADT~nhRIRkvdl~tG~vST~~fs------g--~g~lg~P~~l~~PL~~  216 (444)
                           ...|. +++.         ..++|||||+.||||++++ .+|.++++.-.      |  .|.+..+..|+.|.++
T Consensus       331 -----~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~gi  404 (430)
T 3tc9_A          331 -----MHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGI  404 (430)
T ss_dssp             -----BSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEE
T ss_pred             -----eCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEE
Confidence                 01133 3443         3479999999999999999 46888888643      2  3346677889999999


Q ss_pred             eeec--c-cccCCcccceeeeeec
Q 013362          217 VYAV--A-GGHQGSWTDHIQRCSL  237 (444)
Q Consensus       217 v~~~--~-~~~~g~~~~~i~~v~~  237 (444)
                      +++.  + .+++++.+|+|+++++
T Consensus       405 avd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          405 VYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEcc
Confidence            9985  3 5579999999999975

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=7.7e-17  Score=163.11  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=101.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCC--Ce---EEEeccC-CCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR--RV---LETVYPT-SGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t--g~---VtTVAGt-G~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      .|.||++|++|+.|||+|+.||+|++++...  +.   +.+++|. |..        +|.   +|.+..+.         
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~--------g~~---dg~~~~a~---------  330 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK--------DWV---DGVGKKAR---------  330 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCB--------CCB---CEEGGGCB---------
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCC--------CCC---CCCCcceE---------
Confidence            5999999999988999999999999998652  33   6789987 433        222   45666666         


Q ss_pred             CCCCcc-eeEEc--------CCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceee--cceehhhhhhhhhcCCcccc
Q 013362           76 SLIFPW-HLMKS--------EDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEI--CGVLVMEKVFLLKQMPQDWL  144 (444)
Q Consensus        76 ~Ln~P~-gL~~d--------~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~--~G~li~~~~a~l~~~~~~~~  144 (444)
                       |++|. +++++        ++|+|||||++||+|+++++ +|.++++++.......+  +|.+                
T Consensus       331 -~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~----------------  392 (430)
T 3tc9_A          331 -MHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDL----------------  392 (430)
T ss_dssp             -BSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEET----------------
T ss_pred             -eCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCc----------------
Confidence             99999 89884        55899999999999999995 69999999631110000  1100                


Q ss_pred             cccccccccccCCCccccccccccc--CCeEEEEeCCCCeEEEEeCC
Q 013362          145 LHQIDSSCSLKELPYAGLISSSIAF--QNHILLCDIVGQRIMRLNRE  189 (444)
Q Consensus       145 ~~~~~~~~~~~Gip~a~~~Sgla~~--~~~LyIADT~nhRIRkvdl~  189 (444)
                           .     ..+....|.+++..  ++.|||||+.||||||++++
T Consensus       393 -----~-----~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          393 -----R-----QEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             -----T-----TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -----h-----hhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence                 0     00001225566654  58999999999999999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=3.5e-15  Score=149.38  Aligned_cols=178  Identities=16%  Similarity=0.152  Sum_probs=126.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.+++++++++.|||+|. +++|+++|+.++.+.++++.+..               |.    .          -..|+
T Consensus       220 ~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~---------------g~----~----------~~~P~  269 (409)
T 3hrp_A          220 KIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELS---------------GS----L----------GTNPG  269 (409)
T ss_dssp             CCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCC---------------SC----C----------CCSSC
T ss_pred             CcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEeccccc---------------CC----C----------CCCcc
Confidence            6899999996678999987 89999999999988888876432               10    0          12377


Q ss_pred             -eeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 -HLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 -gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                       +|++++ ++.|||+|+.+|+|+++|++ |.+.++++.........|.      +.                .....   
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~------~~----------------~~~~~---  323 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKITPD-GECEWFCGSATQKTVQDGL------RE----------------EALFA---  323 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECTTCCSCBCEE------GG----------------GCBCS---
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEecC-CCEEEEEeCCCCCCcCCCc------cc----------------ccEeC---
Confidence             999998 59999999999999999986 6688888532110000110      00                00001   


Q ss_pred             ccccccccc-cCCeEEEEeC-CCCeEEEEeCCCCeEEEeeec-cc-c---ccCCceeeeeccceeeec-c-cccCCcccc
Q 013362          160 AGLISSSIA-FQNHILLCDI-VGQRIMRLNRESGVCSNFQFS-NF-A---ILGLPYWFAFPLERVYAV-A-GGHQGSWTD  230 (444)
Q Consensus       160 a~~~Sgla~-~~~~LyIADT-~nhRIRkvdl~tG~vST~~fs-g~-g---~lg~P~~l~~PL~~v~~~-~-~~~~g~~~~  230 (444)
                        .|.+++. ..+.|||||+ .+|||+++++.+|.++++.-. +. |   .......|+.|-..+++. + .+++++.++
T Consensus       324 --~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~  401 (409)
T 3hrp_A          324 --QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK  401 (409)
T ss_dssp             --SEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC
T ss_pred             --CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC
Confidence              1334443 3567999999 999999999999999998543 11 1   133456688888888865 4 457999999


Q ss_pred             eeeeeec
Q 013362          231 HIQRCSL  237 (444)
Q Consensus       231 ~i~~v~~  237 (444)
                      +|+++++
T Consensus       402 ~Ir~i~~  408 (409)
T 3hrp_A          402 AIRKYAV  408 (409)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9999965

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=6e-15  Score=140.53  Aligned_cols=180  Identities=12%  Similarity=0.115  Sum_probs=121.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCC--eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRR--VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg--~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|.||++|++|+ |||+|+.+|+|+++|+...  .+.++...+..               |.. ...          |+.
T Consensus        92 ~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~---------------g~~-~~~----------~~~  144 (329)
T 3fvz_A           92 LPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQP---------------GSD-QNH----------FCQ  144 (329)
T ss_dssp             SEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBC---------------CCS-TTC----------CSS
T ss_pred             CceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCC---------------CCC-ccc----------cCC
Confidence            699999999885 9999999999999998655  57777655433               110 112          999


Q ss_pred             cceeEEcC-CCeEEEEeC-CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           80 PWHLMKSE-DDNLLIINR-SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        80 P~gL~~d~-dG~LYIADa-gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      |++|++++ +|.|||||+ ++++|+++|++ |.+....+....     +..                     .....   
T Consensus       145 P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~-----~~~---------------------~~~~~---  194 (329)
T 3fvz_A          145 PTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESS-----GSS---------------------PRPGQ---  194 (329)
T ss_dssp             EEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECC-----SSS---------------------CCTTE---
T ss_pred             CcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCC-----CCC---------------------CCCcc---
Confidence            99999998 799999997 79999999965 554444321110     000                     00000   


Q ss_pred             Ccccccccccc--cCCeEEEEeCCCCeEEEEeCCCCe-EEEeeeccccccCCceeeee-ccceeeecc--cccCCcccce
Q 013362          158 PYAGLISSSIA--FQNHILLCDIVGQRIMRLNRESGV-CSNFQFSNFAILGLPYWFAF-PLERVYAVA--GGHQGSWTDH  231 (444)
Q Consensus       158 p~a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~-vST~~fsg~g~lg~P~~l~~-PL~~v~~~~--~~~~g~~~~~  231 (444)
                        ...|.+++.  .++.|||||..+++|+++++++|. +.++...+.+  ..|+.+.+ | ..++...  .++++....+
T Consensus       195 --~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~  269 (329)
T 3fvz_A          195 --FSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG--RNVFAISYIP-GFLFAVNGKPYFGDQEPVQ  269 (329)
T ss_dssp             --ESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT--TCEEEEEEET-TEEEEEECCCCTTCSCCCC
T ss_pred             --cCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC--CCcceeeecC-CEEEEeCCCEEeccCCCcE
Confidence              011344443  247999999999999999999554 5555433322  33444443 5 5555332  4567888888


Q ss_pred             eeeeecCCCeee
Q 013362          232 IQRCSLLPGRID  243 (444)
Q Consensus       232 i~~v~~~pGri~  243 (444)
                      |..+++..|++.
T Consensus       270 v~~~~~~~g~~~  281 (329)
T 3fvz_A          270 GFVMNFSSGEII  281 (329)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEEcCCCeEE
Confidence            999988888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.63  E-value=7.8e-15  Score=146.92  Aligned_cols=177  Identities=13%  Similarity=0.039  Sum_probs=128.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|||+|..++.||++|+++++|+++++..+...++...                        .          |..|.
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~------------------------~----------~~~P~  205 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------N----------GSKPR  205 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC------------------------S----------SCCEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC------------------------C----------CCCcc
Confidence            6999999987789999999999999999876666665421                        1          78899


Q ss_pred             eeEEcC-CCeEEEEeCC-CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSE-DDNLLIINRS-FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~-dG~LYIADag-nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++ .|.||++|.+ +++|++++++....++++.+.  .                                  .   
T Consensus       206 ~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~--l----------------------------------~---  246 (400)
T 3p5b_L          206 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN--I----------------------------------Q---  246 (400)
T ss_dssp             EEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS--C----------------------------------S---
T ss_pred             eEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC--C----------------------------------C---
Confidence            999996 5899999987 599999999755555554210  0                                  0   


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                        .|.+|+.  .++.||++|+.+++|++++++++...+|.. +.+.++.|..      .....+ .+.++..+++|.+++
T Consensus       247 --~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~l~~P~g------l~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          247 --WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFS------LAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             --CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-CSSTTSSEEE------EEEETTEEEEEESSSCSEEEEE
T ss_pred             --ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-CCCCCCCCEE------EEEeCCEEEEecCCCCeEEEEE
Confidence              1234443  478999999999999999999888777742 2233444444      433333 456888889999999


Q ss_pred             cCCCeeeEEEe--eeCCCCccccccc
Q 013362          237 LLPGRIDIKVN--VDIPSDTELVESL  260 (444)
Q Consensus       237 ~~pGri~i~v~--v~~P~~~el~~p~  260 (444)
                      ...|+..-.|.  +.-|.++.+..|+
T Consensus       318 ~~~G~~~~~i~~~~~~p~~i~v~~~~  343 (400)
T 3p5b_L          318 RLTGSDVNLLAENLLSPEDMVLFHNL  343 (400)
T ss_dssp             SSSCCCCEEEECSCSCEEEEEEESGG
T ss_pred             cCCCCceEEEecCCCCCceEEEEeec
Confidence            88886543343  3347788777775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=1.4e-14  Score=137.89  Aligned_cols=175  Identities=11%  Similarity=0.073  Sum_probs=126.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCC------------------------eEEEEECCCCeEEEeccCCCcCccCCcchhhhhc
Q 013362            2 RPAASFYHKDDDCLYIVDSENH------------------------AIRRADMGRRVLETVYPTSGISKKNNSLWAWIME   57 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNH------------------------aIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~   57 (444)
                      .|.|||+|++| .|||+|..|+                        .|+++|..+|.+....|.                
T Consensus        25 ~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----------------   87 (329)
T 3fvz_A           25 QVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK----------------   87 (329)
T ss_dssp             CEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT----------------
T ss_pred             CceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC----------------
Confidence            68999999998 6999999996                        477777666665433322                


Q ss_pred             ccCcccccCccccCCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEECCCC--cEEEeecCCccceeecceehhhhhhh
Q 013362           58 KLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASG--EIKEAVKGFSKVLEICGVLVMEKVFL  135 (444)
Q Consensus        58 ~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG--~I~TiagG~~~~~~~~G~li~~~~a~  135 (444)
                                       ..|+.|++|+++++|+|||+|.++++|+++|+...  .+.++......     |.        
T Consensus        88 -----------------~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-----g~--------  137 (329)
T 3fvz_A           88 -----------------NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-----GS--------  137 (329)
T ss_dssp             -----------------TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----CC--------
T ss_pred             -----------------CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----CC--------
Confidence                             11889999999999999999999999999998654  35555421110     00        


Q ss_pred             hhcCCcccccccccccccccCCCccccccccccc--CCeEEEEeC-CCCeEEEEeCCCCeEEEeeeccccccCCceeeee
Q 013362          136 LKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAF--QNHILLCDI-VGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF  212 (444)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla~~--~~~LyIADT-~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~  212 (444)
                                       ...   ....|.+++..  ++.|||||+ .+++|++++.++..+.+++..+.+....|..|..
T Consensus       138 -----------------~~~---~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~  197 (329)
T 3fvz_A          138 -----------------DQN---HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSV  197 (329)
T ss_dssp             -----------------STT---CCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESC
T ss_pred             -----------------Ccc---ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCC
Confidence                             000   00113444443  689999998 7999999998887888887666655555677888


Q ss_pred             ccceeeec--c-cccCCcccceeeeeecCCCeee
Q 013362          213 PLERVYAV--A-GGHQGSWTDHIQRCSLLPGRID  243 (444)
Q Consensus       213 PL~~v~~~--~-~~~~g~~~~~i~~v~~~pGri~  243 (444)
                      |...+++.  + .++++..+++|+.+++..|++.
T Consensus       198 p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~  231 (329)
T 3fvz_A          198 PHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV  231 (329)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            88887764  3 3468899999999999878765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.63  E-value=9.4e-15  Score=160.22  Aligned_cols=178  Identities=13%  Similarity=0.047  Sum_probs=133.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|||+|..++.||++|+++++|+++++..+.+.++...                        .          |..|.
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~------------------------~----------l~~P~  517 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------N----------GSKPR  517 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------------------T----------TCCEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC------------------------C----------CCCcc
Confidence            6999999998889999999999999999976666666432                        1          77899


Q ss_pred             eeEEcCC-CeEEEEeCCC-CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSED-DNLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~d-G~LYIADagn-h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|+++.. |.||++|.++ ++|++++++....++++.+.  +                                  .   
T Consensus       518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~--l----------------------------------~---  558 (791)
T 3m0c_C          518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN--I----------------------------------Q---  558 (791)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS--C----------------------------------S---
T ss_pred             eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC--C----------------------------------C---
Confidence            9999975 8999999987 99999999865666555310  0                                  0   


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                        .|.+|+.  .++.||++|+.+++|+++++++....+|... .+.+..      |+++....+ .|+++..+++|.+++
T Consensus       559 --~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~------P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          559 --WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAH------PFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             --CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSS------EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             --CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCccCC------CCEEEEeCCEEEEEECCCCEEEEEe
Confidence              1334443  4789999999999999999998888877432 233434      444444444 456889999999999


Q ss_pred             cCCCeee--EEEeeeCCCCcccccccc
Q 013362          237 LLPGRID--IKVNVDIPSDTELVESLQ  261 (444)
Q Consensus       237 ~~pGri~--i~v~v~~P~~~el~~p~~  261 (444)
                      ...|+..  |...+.-|.++.+..|+.
T Consensus       630 k~tG~~~~~l~~~l~~P~~i~v~h~~~  656 (791)
T 3m0c_C          630 RLTGSDVNLLAENLLSPEDMVLFHNLT  656 (791)
T ss_dssp             TTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred             CCCCcceEEeecCCCCceeEeeecccc
Confidence            8888543  333455699999988763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.59  E-value=3.3e-14  Score=141.33  Aligned_cols=175  Identities=13%  Similarity=0.069  Sum_probs=125.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|||+|+.++.||++|+.+++|+++++..+...++..                        ..          |..|.
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~------------------------~~----------l~~P~  205 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW------------------------QS----------LEKPR  205 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC------------------------SS----------CSCEE
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec------------------------CC----------CCCCc
Confidence            699999998888999999999999999986443333321                        11          78899


Q ss_pred             eeEEcC-CCeEEEEeCCC-CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSE-DDNLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~-dG~LYIADagn-h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++ +|.||++|.++ ++|++++++....++++...  .                                  ..  
T Consensus       206 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~--~----------------------------------~~--  247 (386)
T 3v65_B          206 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH--L----------------------------------FW--  247 (386)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS--C----------------------------------SC--
T ss_pred             EEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC--C----------------------------------CC--
Confidence            999995 58999999999 99999999755555554210  0                                  01  


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                         |.+|+.  .++.||++|+.+++|++++++++...+|...+   ++.      |.+.+...+ .++++..+++|.+++
T Consensus       248 ---PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~---~~~------P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          248 ---PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG---LPH------PFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             ---EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS---CSS------EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC---CCC------ceEEEEECCEEEEeeCCCCeEEEEE
Confidence               233343  47899999999999999999877666653222   344      444444333 456888889999998


Q ss_pred             cCCCeee--EEEeeeCCCCccccccc
Q 013362          237 LLPGRID--IKVNVDIPSDTELVESL  260 (444)
Q Consensus       237 ~~pGri~--i~v~v~~P~~~el~~p~  260 (444)
                      ...|+..  |...+.-|.|+.+..|.
T Consensus       316 ~~~G~~~~~i~~~~~~p~gi~v~~~~  341 (386)
T 3v65_B          316 KFTGKNQEIIRNKLHFPMDIHTLHPQ  341 (386)
T ss_dssp             TTTCCSCEEEECSCSCCCCEEEESGG
T ss_pred             CCCCcceEEEccCCCCCceEEEEchh
Confidence            7777643  33345567888877765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.58  E-value=7.2e-14  Score=136.30  Aligned_cols=175  Identities=12%  Similarity=0.066  Sum_probs=127.3

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|+|+|..++.||++|+.+++|.++++......++...                        .          +..|.
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~------------------------~----------~~~P~  125 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ------------------------E----------LDQPR  125 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------------------------S----------CSSEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC------------------------C----------CCCcc
Confidence            6999999987889999999999999999864444443211                        1          78899


Q ss_pred             eeEEcC-CCeEEEEeCC-CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSE-DDNLLIINRS-FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~-dG~LYIADag-nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++ .|.||++|.+ +++|++++++....++++..  ..                                  .   
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--~l----------------------------------~---  166 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS--EI----------------------------------Y---  166 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS--SC----------------------------------S---
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC--CC----------------------------------C---
Confidence            999996 4899999976 89999999974444444421  00                                  0   


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                        .|.+|+.  .++.||++|+.+++|.+++++++...+|.-   +.++.      |.+.+...+ .+.++..+++|.+++
T Consensus       167 --~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---~~~~~------P~glav~~~~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          167 --WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GSLPH------PFALTLFEDILYWTDWSTHSILACN  235 (318)
T ss_dssp             --CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SCCSC------EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             --CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec---CCCCC------ceEEEEeCCEEEEEecCCCeEEEEE
Confidence              1234443  478999999999999999999877777641   23444      444444433 456888899999999


Q ss_pred             cCCCee--eEEEeeeCCCCccccccc
Q 013362          237 LLPGRI--DIKVNVDIPSDTELVESL  260 (444)
Q Consensus       237 ~~pGri--~i~v~v~~P~~~el~~p~  260 (444)
                      ...|+.  .|.+.+.-|.++.+..|.
T Consensus       236 ~~~G~~~~~i~~~~~~P~~i~v~~~~  261 (318)
T 3sov_A          236 KYTGEGLREIHSDIFSPMDIHAFSQQ  261 (318)
T ss_dssp             TTTCCSCEEEECCCSSCCCEEEECGG
T ss_pred             CCCCCceEEEeCCCCCCcEEEEeccc
Confidence            977764  455556678888888775

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.58  E-value=1.3e-13  Score=132.88  Aligned_cols=177  Identities=14%  Similarity=0.054  Sum_probs=124.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.|||+|..++.||++|+.+++|.++++....+.++...                        .          +..|.
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~------------------------~----------~~~P~  123 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------N----------GSKPR  123 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------------------T----------TCCEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC------------------------C----------CCCcc
Confidence            6999999987779999999999999999875555554311                        1          77899


Q ss_pred             eeEEcC-CCeEEEEeCCC-CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSE-DDNLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~-dG~LYIADagn-h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++ +|.||++|.++ ++|++++++....+.++..  ..                                  .   
T Consensus       124 ~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~--~~----------------------------------~---  164 (316)
T 1ijq_A          124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--NI----------------------------------Q---  164 (316)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS--SC----------------------------------S---
T ss_pred             eEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC--CC----------------------------------C---
Confidence            999995 58999999986 9999999874444444321  00                                  0   


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                        .|.+|+.  .++.||++|+.+++|.+++++++...+|.-. .+.++.|      .+.+...+ .++++..+++|.+++
T Consensus       165 --~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~-~~~~~~P------~giav~~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          165 --WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHP------FSLAVFEDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             --CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSE------EEEEEETTEEEEEETTTTEEEEEE
T ss_pred             --CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec-CCccCCc------EEEEEECCEEEEEECCCCeEEEEe
Confidence              1234443  4789999999999999999998777776321 1234444      44444444 445788889999999


Q ss_pred             cCCCeeeEEE--eeeCCCCccccccc
Q 013362          237 LLPGRIDIKV--NVDIPSDTELVESL  260 (444)
Q Consensus       237 ~~pGri~i~v--~v~~P~~~el~~p~  260 (444)
                      ...|+..-.+  .+.-|.|+.+..|.
T Consensus       236 ~~~g~~~~~i~~~~~~p~~i~v~~~~  261 (316)
T 1ijq_A          236 RLTGSDVNLLAENLLSPEDMVLFHNL  261 (316)
T ss_dssp             TTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred             CCCCcceEEEecCCCCceEEEEeccc
Confidence            8888643222  33456777666654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.57  E-value=9.1e-14  Score=136.34  Aligned_cols=175  Identities=13%  Similarity=0.071  Sum_probs=125.2

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|||+|..++.||++|..+++|.++++......++.-                        ..          |..|.
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~------------------------~~----------l~~P~  162 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW------------------------QS----------LEKPR  162 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------------TT----------CSCEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe------------------------CC----------CCCcc
Confidence            699999998888999999999999999986443333321                        11          78899


Q ss_pred             eeEEcC-CCeEEEEeCCC-CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSE-DDNLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~-dG~LYIADagn-h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++ +|.||++|.++ ++|++++++....++++..  ..                                  .   
T Consensus       163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--~~----------------------------------~---  203 (349)
T 3v64_C          163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT--HL----------------------------------F---  203 (349)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS--SC----------------------------------S---
T ss_pred             eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--CC----------------------------------C---
Confidence            999996 58999999999 9999999975444444320  00                                  0   


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                        .|.+|+.  .++.||++|+.+++|.+++++++...+|...+   ++.      |.+.+...+ .++++..+++|.+++
T Consensus       204 --~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~---~~~------P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          204 --WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG---LPH------PFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             --CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---CSS------EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             --CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC---CCC------ceEEEEECCEEEEecCCCCeEEEEE
Confidence              1234443  47899999999999999999977666653222   344      444444344 456888889999998


Q ss_pred             cCCCeee--EEEeeeCCCCccccccc
Q 013362          237 LLPGRID--IKVNVDIPSDTELVESL  260 (444)
Q Consensus       237 ~~pGri~--i~v~v~~P~~~el~~p~  260 (444)
                      ...|+..  |...+.-|.|+.+..|.
T Consensus       273 ~~~G~~~~~i~~~~~~p~gi~v~~~~  298 (349)
T 3v64_C          273 KFTGKNQEIIRNKLHFPMDIHTLHPQ  298 (349)
T ss_dssp             TTTCCSCEEEECSCSCCCCEEEECGG
T ss_pred             ccCCCccEEeccCCCCCceEEEEccc
Confidence            7777643  33345668888887775

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.54  E-value=5.3e-13  Score=122.86  Aligned_cols=162  Identities=13%  Similarity=0.052  Sum_probs=114.3

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.||++|++++.|||+|..+++|.++++......++...                        .          +..|.
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------------------------~----------~~~P~  125 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT------------------------G----------LVNPR  125 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------------------------S----------CSSEE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC------------------------C----------CCCcc
Confidence            7999999998889999999999999999754333333211                        1          67899


Q ss_pred             eeEEcC-CCeEEEEeCC--CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           82 HLMKSE-DDNLLIINRS--FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        82 gL~~d~-dG~LYIADag--nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      ++++++ +|.||++|.+  +++|++++++....+++...  .                                  ... 
T Consensus       126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~--~----------------------------------~~~-  168 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD--N----------------------------------LGL-  168 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT--T----------------------------------CSC-
T ss_pred             EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC--C----------------------------------CCC-
Confidence            999998 5899999988  78999999874433333310  0                                  011 


Q ss_pred             cccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeee
Q 013362          159 YAGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRC  235 (444)
Q Consensus       159 ~a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v  235 (444)
                          |.+++.  .++.||++|+.+++|.+++++++...++. .   .++.      |.+...+.+ .++++...++|.++
T Consensus       169 ----P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~---~~~~------P~gi~~d~~~lyva~~~~~~v~~~  234 (267)
T 1npe_A          169 ----PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-E---GLQY------PFAVTSYGKNLYYTDWKTNSVIAM  234 (267)
T ss_dssp             ----EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-E---CCCS------EEEEEEETTEEEEEETTTTEEEEE
T ss_pred             ----CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe-c---CCCC------ceEEEEeCCEEEEEECCCCeEEEE
Confidence                233333  36799999999999999999977665542 1   1233      444444444 34577778899999


Q ss_pred             ecCCCeeeEEEee
Q 013362          236 SLLPGRIDIKVNV  248 (444)
Q Consensus       236 ~~~pGri~i~v~v  248 (444)
                      +...|++.-.+.+
T Consensus       235 d~~~g~~~~~i~~  247 (267)
T 1npe_A          235 DLAISKEMDTFHP  247 (267)
T ss_dssp             ETTTTEEEEEECC
T ss_pred             eCCCCCceEEEcc
Confidence            9999987655544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.50  E-value=4.7e-13  Score=142.66  Aligned_cols=173  Identities=13%  Similarity=0.022  Sum_probs=128.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|||+|..++.||++|+++++|.++++..+...++...                        .          |..|.
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~------------------------~----------l~~P~  126 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK------------------------D----------LDSPR  126 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS------------------------S----------CCCEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC------------------------C----------CCCcc
Confidence            6999999988889999999999999999864444444211                        2          88899


Q ss_pred             eeEEcC-CCeEEEEeCC-CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSE-DDNLLIINRS-FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~-dG~LYIADag-nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++ +|.||++|.+ +++|++++++...+++++.+...                                       
T Consensus       127 ~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~---------------------------------------  167 (628)
T 4a0p_A          127 ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGR---------------------------------------  167 (628)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSS---------------------------------------
T ss_pred             cEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCC---------------------------------------
Confidence            999996 5999999987 89999999987666666532111                                       


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                         |.+|+.  .++.||++|+.+++|.+++++++....+.    +      .+..|.+.+...+ .+.++..++.|.+++
T Consensus       168 ---P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~----~------~l~~P~glav~~~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          168 ---ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA----D------DLPHPFGLTQYQDYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             ---EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----E------CCSCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---cceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee----c------cCCCceEEEEECCEEEEecCCCCEEEEEE
Confidence               234443  36899999999999999999887664432    1      2334555555444 445888899999999


Q ss_pred             cCCCee--eEEEeeeCCCCccccccc
Q 013362          237 LLPGRI--DIKVNVDIPSDTELVESL  260 (444)
Q Consensus       237 ~~pGri--~i~v~v~~P~~~el~~p~  260 (444)
                      ...|+-  .|.....-|.|+.+..|.
T Consensus       235 k~tg~~~~~l~~~~~~p~~i~v~~~~  260 (628)
T 4a0p_A          235 KTSGQNRTIIQGHLDYVMDILVFHSS  260 (628)
T ss_dssp             TTTCCSCEEEECSCCSCCEEEEECGG
T ss_pred             CCCCCceEEEecCCCCcceeeeeeec
Confidence            877753  344445568888887775

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.48  E-value=1.5e-12  Score=129.46  Aligned_cols=181  Identities=15%  Similarity=0.103  Sum_probs=124.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.|+++|+.++.||++|..+++|+++++..+.++++...+                                  +..|.
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~----------------------------------~~~p~  162 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG----------------------------------LESPG  162 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS----------------------------------CSCCC
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC----------------------------------CCCcc
Confidence            69999999888899999999999999999877776664331                                  66789


Q ss_pred             eeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           82 HLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        82 gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      +|+++. .+.||++|.++++|++++++....+++..+.-                                    .    
T Consensus       163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l------------------------------------~----  202 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL------------------------------------E----  202 (386)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC------------------------------------S----
T ss_pred             EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC------------------------------------C----
Confidence            999994 58999999999999999997555554442100                                    0    


Q ss_pred             cccccccc--cCCeEEEEeCCC-CeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeee--cc-cccCCcccceeee
Q 013362          161 GLISSSIA--FQNHILLCDIVG-QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYA--VA-GGHQGSWTDHIQR  234 (444)
Q Consensus       161 ~~~Sgla~--~~~~LyIADT~n-hRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~--~~-~~~~g~~~~~i~~  234 (444)
                       .|.+++.  .++.||++|..+ ++|.++++++.....+...+         +..|-+.+++  .+ .+++++..++|.+
T Consensus       203 -~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~---------~~~PnGlavd~~~~~lY~aD~~~~~I~~  272 (386)
T 3v65_B          203 -KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH---------LFWPNGLTIDYAGRRMYWVDAKHHVIER  272 (386)
T ss_dssp             -CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS---------CSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             -CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC---------CCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence             0223332  378999999999 99999999987776664222         3345555554  22 4468888999999


Q ss_pred             eecCCCeeeEEE--eeeCCCCcccccccccceeeeee
Q 013362          235 CSLLPGRIDIKV--NVDIPSDTELVESLQEGCIWRQA  269 (444)
Q Consensus       235 v~~~pGri~i~v--~v~~P~~~el~~p~~e~ciwrq~  269 (444)
                      +++--+....-+  ...-|.++.+   ..+.-.|-..
T Consensus       273 ~d~dG~~~~~~~~~~~~~P~giav---~~~~ly~td~  306 (386)
T 3v65_B          273 ANLDGSHRKAVISQGLPHPFAITV---FEDSLYWTDW  306 (386)
T ss_dssp             ECTTSCSCEEEECSSCSSEEEEEE---ETTEEEEEET
T ss_pred             EeCCCCeeEEEEECCCCCceEEEE---ECCEEEEeeC
Confidence            986422111111  1223545444   3455666654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.47  E-value=1.1e-12  Score=139.40  Aligned_cols=157  Identities=11%  Similarity=0.010  Sum_probs=117.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.|||+|..++.||++|+++++|.++++......++...                        .          |+.|+
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~------------------------~----------l~~P~  438 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE------------------------D----------LEEPR  438 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT------------------------T----------CCSEE
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEEC------------------------C----------CCCee
Confidence            6999999987789999999999999999865544444311                        1          88999


Q ss_pred             eeEEcCC-CeEEEEeCCC-CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSED-DNLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~d-G~LYIADagn-h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++. |.||++|.+. ++|++++++....+.++.+  .                                    +  
T Consensus       439 ~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~--~------------------------------------l--  478 (619)
T 3s94_A          439 AIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT--S------------------------------------L--  478 (619)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS--S------------------------------------C--
T ss_pred             eEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeC--C------------------------------------C--
Confidence            9999975 9999999885 8999999874334444421  0                                    0  


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                       ..|.||+.  .++.||+||+.+++|.++++++....++...   .      +.+|.+.+...+ .+.+|..++.|++++
T Consensus       479 -~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~---~------l~~P~glav~~~~ly~tD~~~~~I~~~~  548 (619)
T 3s94_A          479 -GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED---K------IPHIFGFTLLGDYVYWTDWQRRSIERVH  548 (619)
T ss_dssp             -SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEEC---C------CCSSCCEEEETTEEEEECTTSSCEEEEE
T ss_pred             -CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEecc---C------CCCcEEEEEECCEEEEeecCCCeEEEEE
Confidence             01344444  3789999999999999999998887776432   2      334555544444 456999999999999


Q ss_pred             cCCCee
Q 013362          237 LLPGRI  242 (444)
Q Consensus       237 ~~pGri  242 (444)
                      ...|..
T Consensus       549 k~~g~~  554 (619)
T 3s94_A          549 KRSAER  554 (619)
T ss_dssp             SSSCCE
T ss_pred             cCCCce
Confidence            988843

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.46  E-value=1e-12  Score=139.80  Aligned_cols=175  Identities=11%  Similarity=0.047  Sum_probs=125.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|||+|..++.||++|+.+++|.++++..+.+.++...                        .          |+.|+
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~------------------------~----------l~~P~  130 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ------------------------E----------LDQPR  130 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------------------------S----------CSCCC
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeC------------------------C----------CCCCc
Confidence            6999999998889999999999999999876655555421                        1          88899


Q ss_pred             eeEEcCC-CeEEEEeCC-CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSED-DNLLIINRS-FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~d-G~LYIADag-nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++. |.||++|.+ +++|++.+++....++++..  .+                                      
T Consensus       131 ~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~--~~--------------------------------------  170 (619)
T 3s94_A          131 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS--EI--------------------------------------  170 (619)
T ss_dssp             CEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS--SC--------------------------------------
T ss_pred             eEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC--CC--------------------------------------
Confidence            9999975 899999987 68999999975455555421  00                                      


Q ss_pred             cccccccccc--CCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIAF--QNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~~--~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                       ..|.+|+.+  ++.||++|+.+++|.+++++++...++..   +      .+.+|.+..+... .+.++..++.|.+++
T Consensus       171 -~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~------~~~~P~gi~~~~~~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          171 -YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---G------SLPHPFALTLFEDILYWTDWSTHSILACN  240 (619)
T ss_dssp             -SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------CCCEEESSSEEEEECTTTCSEEEEE
T ss_pred             -CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---C------CCCCceEEEEeCCEEEEecCCCCEEEEEE
Confidence             013444443  78999999999999999999877766532   1      2445656655444 446889999999999


Q ss_pred             cCCCeeeEEE--eeeCCCCccccccc
Q 013362          237 LLPGRIDIKV--NVDIPSDTELVESL  260 (444)
Q Consensus       237 ~~pGri~i~v--~v~~P~~~el~~p~  260 (444)
                      ...|+..-.|  +..-|.++.+..|.
T Consensus       241 ~~tg~~~~~i~~~~~~p~~i~v~~~~  266 (619)
T 3s94_A          241 KYTGEGLREIHSDIFSPMDIHAFSQQ  266 (619)
T ss_dssp             SSSCCCCEECCSCCCCCSEEEECCGG
T ss_pred             CCCCcccEEEecCCCCCcEEEEEccc
Confidence            9888653333  34458888887664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.44  E-value=3.6e-12  Score=124.99  Aligned_cols=182  Identities=15%  Similarity=0.103  Sum_probs=123.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.|+++|+.++.||++|..+++|+++++..+.++++...                        .          +..|.
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~------------------------~----------~~~p~  119 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST------------------------G----------LESPG  119 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------------------------S----------CSCCC
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC------------------------C----------CCCcc
Confidence            6899999988889999999999999999876655554322                        1          67799


Q ss_pred             eeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           82 HLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        82 gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      +|+++. +++||++|.++++|++++++....+++..+.-                                    ..   
T Consensus       120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l------------------------------------~~---  160 (349)
T 3v64_C          120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL------------------------------------EK---  160 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC------------------------------------SC---
T ss_pred             EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC------------------------------------CC---
Confidence            999995 58999999999999999997554444432100                                    00   


Q ss_pred             cccccccc--cCCeEEEEeCCC-CeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeee--cc-cccCCcccceeee
Q 013362          161 GLISSSIA--FQNHILLCDIVG-QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYA--VA-GGHQGSWTDHIQR  234 (444)
Q Consensus       161 ~~~Sgla~--~~~~LyIADT~n-hRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~--~~-~~~~g~~~~~i~~  234 (444)
                        |.+++.  .++.||++|..+ ++|.++++++....++...         .+..|-+.+++  .+ .+++++..++|.+
T Consensus       161 --P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          161 --PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------HLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             --EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS---------SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             --cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------CCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence              223333  378999999999 9999999987766665321         23445555555  22 4468888899999


Q ss_pred             eecCCCeee--EEEeeeCCCCcccccccccceeeeeec
Q 013362          235 CSLLPGRID--IKVNVDIPSDTELVESLQEGCIWRQAR  270 (444)
Q Consensus       235 v~~~pGri~--i~v~v~~P~~~el~~p~~e~ciwrq~r  270 (444)
                      +++--+...  +.....-|.++.+   ..+...|-...
T Consensus       230 ~~~dG~~~~~~~~~~~~~P~giav---~~~~ly~td~~  264 (349)
T 3v64_C          230 ANLDGSHRKAVISQGLPHPFAITV---FEDSLYWTDWH  264 (349)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEE---ETTEEEEEETT
T ss_pred             EeCCCCceEEEEeCCCCCceEEEE---ECCEEEEecCC
Confidence            986432111  1112334555554   33455555443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.43  E-value=3.8e-12  Score=127.43  Aligned_cols=183  Identities=13%  Similarity=0.086  Sum_probs=123.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCC----eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRR----VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg----~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      +|.||+||+.++.||++|..+++|+++++..+    ...++.+.                        .          +
T Consensus       113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~------------------------~----------~  158 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------------------D----------I  158 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS------------------------S----------C
T ss_pred             cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC------------------------C----------C
Confidence            68999999988899999999999999998542    12222211                        1          7


Q ss_pred             CCcceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeec-CCccceeecceehhhhhhhhhcCCccccccccccccccc
Q 013362           78 IFPWHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVK-GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLK  155 (444)
Q Consensus        78 n~P~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~Tiag-G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~  155 (444)
                      ..|.+|+++. .++||++|.++++|++++++.+..+++.. +..                                 .  
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~---------------------------------~--  203 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS---------------------------------K--  203 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC---------------------------------C--
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC---------------------------------C--
Confidence            7899999996 58999999999999999998776666653 111                                 0  


Q ss_pred             CCCcccccccccc--cCCeEEEEeCC-CCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeee--cc-cccCCccc
Q 013362          156 ELPYAGLISSSIA--FQNHILLCDIV-GQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYA--VA-GGHQGSWT  229 (444)
Q Consensus       156 Gip~a~~~Sgla~--~~~~LyIADT~-nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~--~~-~~~~g~~~  229 (444)
                             |.+|+.  .++.||++|.. +++|.++++++....++...+         +..|-+.+++  .+ .+++|+.+
T Consensus       204 -------P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~---------l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          204 -------PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN---------IQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             -------EEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS---------CSCEEEEEEETTTTEEEEEETTT
T ss_pred             -------cceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC---------CCceEEEEEEeCCCEEEEEECCC
Confidence                   223332  36899999976 599999999987777764322         3345555555  22 44688899


Q ss_pred             ceeeeeecCCCeeeEEEee--eCCCCcccccccccceeeeeec
Q 013362          230 DHIQRCSLLPGRIDIKVNV--DIPSDTELVESLQEGCIWRQAR  270 (444)
Q Consensus       230 ~~i~~v~~~pGri~i~v~v--~~P~~~el~~p~~e~ciwrq~r  270 (444)
                      ++|.++++--+....-+..  .++.-.-|+- ..+...|-...
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~  309 (400)
T 3p5b_L          268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDII  309 (400)
T ss_dssp             TEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESS
T ss_pred             CEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCC
Confidence            9999998743322211111  1222222332 56677887643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.43  E-value=3.7e-13  Score=144.67  Aligned_cols=177  Identities=14%  Similarity=0.061  Sum_probs=124.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.|||+|..++.|||+|..+++|+++++..+.+.++...                        .          +..|.
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~------------------------~----------~~~P~  499 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------Q----------GSKPR  499 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC------------------------S----------SCCCC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC------------------------C----------CCCcc
Confidence            6999999977779999999999999999877767666432                        1          67799


Q ss_pred             eeEEcC-CCeEEEEeCCC-CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSE-DDNLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~-dG~LYIADagn-h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++ .|.||++|.++ ++|++++++....++++..  .+                                  ..  
T Consensus       500 giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~--~l----------------------------------~~--  541 (699)
T 1n7d_A          500 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--NI----------------------------------QW--  541 (699)
T ss_dssp             CEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS--SC----------------------------------SS--
T ss_pred             eEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC--CC----------------------------------CC--
Confidence            999986 48999999886 8999999863333333210  00                                  11  


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                         |.+|+.  .++.||++|+.+++|.++++++....+|.- ..+.+      ..|.+...... .++++...++|.+++
T Consensus       542 ---PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~------~~P~glavd~~~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          542 ---PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRL------AHPFSLAVFEDKVFWTDIINEAIFSAN  611 (699)
T ss_dssp             ---CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC-CSSSC------SSCCCCEEETTEEEEECSTTTCEEEEE
T ss_pred             ---ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe-cCCcC------CCceEeEEECCEEEEEeCCCCeEEEEE
Confidence               234443  468999999999999999998766666531 11233      34545444433 455888889999999


Q ss_pred             cCCCeeeEEE--eeeCCCCccccccc
Q 013362          237 LLPGRIDIKV--NVDIPSDTELVESL  260 (444)
Q Consensus       237 ~~pGri~i~v--~v~~P~~~el~~p~  260 (444)
                      ...|+..=.|  .+.-|.++.+..|.
T Consensus       612 ~~~G~~~~~i~~~~~~P~~i~v~~~~  637 (699)
T 1n7d_A          612 RLTGSDVNLLAENLLSPEDMVLFHQL  637 (699)
T ss_dssp             TTTEEEEECCCTTCSSCCCCCBCSSS
T ss_pred             ccCCCceEEeecCCCCCcEEEEeCcc
Confidence            8888764333  23457788777765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.43  E-value=3.3e-12  Score=117.54  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=90.7

Q ss_pred             CcceEEEecCCCEEEEEeCC--CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSE--NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe--NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|.|+++|++++.|||+|..  +++|.++++......++.-                        ..          +..
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~------------------------~~----------~~~  168 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ------------------------DN----------LGL  168 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC------------------------TT----------CSC
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE------------------------CC----------CCC
Confidence            69999999987899999987  7899999874332222210                        01          778


Q ss_pred             cceeEEcCC-CeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           80 PWHLMKSED-DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        80 P~gL~~d~d-G~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      |.+++++.+ +.||++|+++|+|+++|++++...++..+.                                     +. 
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-------------------------------------~~-  210 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-------------------------------------QY-  210 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-------------------------------------CS-
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-------------------------------------CC-
Confidence            999999975 789999999999999999865554443211                                     11 


Q ss_pred             cccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEee
Q 013362          159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQ  197 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~  197 (444)
                          |.+++..++.||++|..+++|+++++++|.+ .+|.
T Consensus       211 ----P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          211 ----PFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             ----EEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             ----ceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence                2345556889999999999999999998875 4553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.41  E-value=7e-12  Score=120.70  Aligned_cols=153  Identities=12%  Similarity=0.038  Sum_probs=108.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCC----eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRR----VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg----~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      +|.|+++|+.++.||++|..+++|+++++...    .+.++.                        ...          +
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~------------------------~~~----------~   76 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------------------------SRD----------I   76 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE------------------------CSS----------C
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE------------------------eCC----------C
Confidence            69999999988899999999999999998642    111111                        012          7


Q ss_pred             CCcceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362           78 IFPWHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE  156 (444)
Q Consensus        78 n~P~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G  156 (444)
                      ..|.+|+++. +++||++|..+++|.++|++....+++....-                                    .
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------------------------------------~  120 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG------------------------------------S  120 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT------------------------------------C
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC------------------------------------C
Confidence            8899999984 58999999999999999998666666552100                                    0


Q ss_pred             CCcccccccccc--cCCeEEEEeCCC-CeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeee--cc-cccCCcccc
Q 013362          157 LPYAGLISSSIA--FQNHILLCDIVG-QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYA--VA-GGHQGSWTD  230 (444)
Q Consensus       157 ip~a~~~Sgla~--~~~~LyIADT~n-hRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~--~~-~~~~g~~~~  230 (444)
                           .|.+++.  .++.||++|..+ ++|.++++++.....+...         .+..|-+.+++  .+ .+++++..+
T Consensus       121 -----~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~---------~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          121 -----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             -----CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             -----CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC---------CCCCceEEEEeccCCEEEEEECCCC
Confidence                 0223333  478999999986 8999999987666655321         23345555554  22 346888899


Q ss_pred             eeeeeecC
Q 013362          231 HIQRCSLL  238 (444)
Q Consensus       231 ~i~~v~~~  238 (444)
                      +|.++++-
T Consensus       187 ~I~~~d~d  194 (316)
T 1ijq_A          187 SISSIDVN  194 (316)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEecC
Confidence            99999875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.39  E-value=7.1e-12  Score=133.64  Aligned_cols=158  Identities=9%  Similarity=-0.046  Sum_probs=118.3

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.|||+|..+++||++|+++++|.++++......++.-.                        .          |+.|+
T Consensus       390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~------------------------~----------l~~Pr  435 (628)
T 4a0p_A          390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKG------------------------E----------QDRPR  435 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEEC------------------------T----------TCCEE
T ss_pred             CcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeC------------------------C----------CCcee
Confidence            6999999999889999999999999999854334344211                        1          78899


Q ss_pred             eeEEcC-CCeEEEEeCCCC--EEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           82 HLMKSE-DDNLLIINRSFE--TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        82 gL~~d~-dG~LYIADagnh--~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      +|++++ +|.||++|.+++  +|++++++....++++...  .                                     
T Consensus       436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~--l-------------------------------------  476 (628)
T 4a0p_A          436 AVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSG--L-------------------------------------  476 (628)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSS--C-------------------------------------
T ss_pred             eEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEecc--C-------------------------------------
Confidence            999998 699999999998  8999999754455555210  0                                     


Q ss_pred             ccccccccccc--CCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeee
Q 013362          159 YAGLISSSIAF--QNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRC  235 (444)
Q Consensus       159 ~a~~~Sgla~~--~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v  235 (444)
                        ..|.+|+.+  .+.||++|+.+++|.++++++....+|...         .+.+|.+.+...+ .+.+|..++.|.++
T Consensus       477 --~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~---------~~~~P~glav~~~~ly~tD~~~~~i~~~  545 (628)
T 4a0p_A          477 --SKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS---------NILQPVGLTVFENWLYWIDKQQQMIEKI  545 (628)
T ss_dssp             --SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------SCSCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             --CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC---------CCCCcEEEEEECCEEEEEECCCCeEEEE
Confidence              013444443  679999999999999999988877776431         2345656655555 44599999999999


Q ss_pred             ecCCCeee
Q 013362          236 SLLPGRID  243 (444)
Q Consensus       236 ~~~pGri~  243 (444)
                      +..+|+-.
T Consensus       546 ~k~~G~~~  553 (628)
T 4a0p_A          546 DMTGREGR  553 (628)
T ss_dssp             ETTSSSCC
T ss_pred             ECcCCCCc
Confidence            98888643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.38  E-value=8.3e-12  Score=136.97  Aligned_cols=122  Identities=16%  Similarity=0.279  Sum_probs=94.9

Q ss_pred             CcceEEEecCCCEEEEEeCCC-CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSEN-HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeN-HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.|||+|+.++.||++|.++ ++|+++++....+.++...                        .          |..|
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~------------------------~----------l~~P  560 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE------------------------N----------IQWP  560 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS------------------------S----------CSCE
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC------------------------C----------CCCc
Confidence            699999999888999999987 9999999865555554321                        1          8889


Q ss_pred             ceeEEc-CCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKS-EDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d-~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      .+|++| .++.||+||+++++|+++|++....++++.+...                                    ++.
T Consensus       561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~------------------------------------l~~  604 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR------------------------------------LAH  604 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT------------------------------------TSS
T ss_pred             eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc------------------------------------cCC
Confidence            999999 4589999999999999999986666666532110                                    111


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCe-EEEe
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGV-CSNF  196 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~-vST~  196 (444)
                         |.+|+.+++.||++|..+++|++++..+|. +.++
T Consensus       605 ---P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          605 ---PFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             ---EEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ---CCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence               235667888999999999999999987774 4444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.35  E-value=1e-11  Score=121.04  Aligned_cols=120  Identities=17%  Similarity=0.194  Sum_probs=91.9

Q ss_pred             CcceEEEecCCCEEEEEeCC-CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSE-NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe-NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.||++|+.++.||++|.+ +++|.++++.....+++...                        .          |..|
T Consensus       123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~------------------------~----------l~~P  168 (318)
T 3sov_A          123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS------------------------E----------IYWP  168 (318)
T ss_dssp             SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS------------------------S----------CSCE
T ss_pred             CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC------------------------C----------CCCc
Confidence            69999999988899999975 89999999853333333211                        1          7889


Q ss_pred             ceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      .+|+++. ++.||+||+.+++|+++|++.+..++++.+.                                    .+.  
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~------------------------------------~~~--  210 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS------------------------------------LPH--  210 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC------------------------------------CSC--
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC------------------------------------CCC--
Confidence            9999995 5899999999999999999855555555210                                    012  


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEe
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNF  196 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~  196 (444)
                         |.+++.+++.||++|..+++|.+++..+|.. .++
T Consensus       211 ---P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          211 ---PFALTLFEDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             ---EEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ---ceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence               3356667889999999999999999977764 444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.34  E-value=7.7e-11  Score=111.55  Aligned_cols=191  Identities=8%  Similarity=-0.066  Sum_probs=122.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|+++++++ .|||+|..+++|.++|+..+ +.++...+                                   ..|.
T Consensus        33 ~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~-~~~~~~~~-----------------------------------~~p~   75 (306)
T 2p4o_A           33 FLENLASAPDG-TIFVTNHEVGEIVSITPDGN-QQIHATVE-----------------------------------GKVS   75 (306)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCC-EEEEEECS-----------------------------------SEEE
T ss_pred             CcceEEECCCC-CEEEEeCCCCeEEEECCCCc-eEEEEeCC-----------------------------------CCce
Confidence            58999999987 59999999999999997654 44333221                                   1378


Q ss_pred             eeEEcCCCeEEEEeCCCC--EEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSEDDNLLIINRSFE--TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh--~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|+++.+|+|||||.+++  +|+++|..+|++++++.- +..                                  .++ 
T Consensus        76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~----------------------------------~~~-  119 (306)
T 2p4o_A           76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-PDA----------------------------------IFL-  119 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTC----------------------------------SCE-
T ss_pred             eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCc----------------------------------ccc-
Confidence            999999999999998754  599999999999877641 100                                  000 


Q ss_pred             cccccccc-ccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCC-ceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSI-AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGL-PYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla-~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~-P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                          .+++ ..++.+|++|..+++|.++|..++..+.+...+...... ...+..|-.+..+.+ .+++++.+++|.+|+
T Consensus       120 ----~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~  195 (306)
T 2p4o_A          120 ----NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIP  195 (306)
T ss_dssp             ----EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ----CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEE
Confidence                1111 235679999999999999999876433321112111001 112333433322322 446888899999998


Q ss_pred             cCC-Ceee-EEEee--eCCCCcccccccccceeeeeeccc
Q 013362          237 LLP-GRID-IKVNV--DIPSDTELVESLQEGCIWRQARGT  272 (444)
Q Consensus       237 ~~p-Gri~-i~v~v--~~P~~~el~~p~~e~ciwrq~rg~  272 (444)
                      +.. |++. .++-.  ..|.|+.+..   ++++|==.+++
T Consensus       196 ~~~~g~~~~~~~~~~~~~P~gi~vd~---dG~l~va~~~~  232 (306)
T 2p4o_A          196 VDSTDKPGEPEIFVEQTNIDDFAFDV---EGNLYGATHIY  232 (306)
T ss_dssp             BCTTSCBCCCEEEEESCCCSSEEEBT---TCCEEEECBTT
T ss_pred             eCCCCCCCccEEEeccCCCCCeEECC---CCCEEEEeCCC
Confidence            865 5431 22222  3577776652   67888766554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.25  E-value=8.6e-11  Score=111.23  Aligned_cols=117  Identities=15%  Similarity=0.154  Sum_probs=89.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.||+++++++.|||||.+ |.|+++|+.++.+++++... .               |    ..          ++.|.
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~-~---------------~----~~----------~~~p~  129 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHATQLATSV-D---------------G----VP----------FKWLY  129 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETT-TEEEEECTTCEECEEEESEE-T---------------T----EE----------CSCEE
T ss_pred             CCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEEEecccC-C---------------C----Cc----------ccccc
Confidence            59999999744589999987 56999998888888876431 0               0    12          88899


Q ss_pred             eeEEcC-CCeEEEEeCCC-----------------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccc
Q 013362           82 HLMKSE-DDNLLIINRSF-----------------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDW  143 (444)
Q Consensus        82 gL~~d~-dG~LYIADagn-----------------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~  143 (444)
                      +|++++ +|+|||+|.++                 ++|+++|+.+|.++.+..+..                        
T Consensus       130 ~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~------------------------  185 (322)
T 2fp8_A          130 AVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH------------------------  185 (322)
T ss_dssp             EEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES------------------------
T ss_pred             eEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc------------------------
Confidence            999999 89999999874                 689999999898876653211                        


Q ss_pred             ccccccccccccCCCccccccccc--ccCCeEEEEeCCCCeEEEEeCCCC
Q 013362          144 LLHQIDSSCSLKELPYAGLISSSI--AFQNHILLCDIVGQRIMRLNRESG  191 (444)
Q Consensus       144 ~~~~~~~~~~~~Gip~a~~~Sgla--~~~~~LyIADT~nhRIRkvdl~tG  191 (444)
                                   .     |.+++  ..++.|||+|+.+++|.++++.++
T Consensus       186 -------------~-----p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          186 -------------V-----PGGAEVSADSSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             -------------C-----CCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred             -------------c-----CcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence                         0     12222  234579999999999999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.25  E-value=6.1e-10  Score=101.84  Aligned_cols=159  Identities=9%  Similarity=0.121  Sum_probs=104.8

Q ss_pred             CcceEEEecCCCEEEEEeCC-CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSE-NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe-NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|.+++++..++.|||+|.. ++.|+++|.....+.++ +.+                       .          +..|
T Consensus        78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~-~~~-----------------------~----------~~~~  123 (286)
T 1q7f_A           78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF-GAT-----------------------I----------LQHP  123 (286)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE-CTT-----------------------T----------CSCE
T ss_pred             CceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEe-cCc-----------------------c----------CCCc
Confidence            68999996445589999975 99999999543344333 110                       1          6779


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      .+|+++++|.|||++.++++|+++|+....+.++.. ....                                  ..   
T Consensus       124 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-~~~~----------------------------------~~---  165 (286)
T 1q7f_A          124 RGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC-SKHL----------------------------------EF---  165 (286)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC-TTTC----------------------------------SS---
T ss_pred             eEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCC-CCcc----------------------------------CC---
Confidence            999999999999999999999999976444444421 0000                                  00   


Q ss_pred             cccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccc-eeeeeec
Q 013362          161 GLISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTD-HIQRCSL  237 (444)
Q Consensus       161 ~~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~-~i~~v~~  237 (444)
                        |.+++. .+++||++|+.+++|++++.++..+.++..  .|.+..|..+.+ |-++.     ++++..+. .|..++.
T Consensus       166 --p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~g~~~~p~~i~~d~~G~l-----~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          166 --PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG--EGITNYPIGVGINSNGEI-----LIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             --EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC--TTTSCSEEEEEECTTCCE-----EEEECSSSCEEEEECT
T ss_pred             --cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEcc--CCccCCCcEEEECCCCCE-----EEEeCCCCEEEEEECC
Confidence              223332 356899999999999999998877777643  334455555444 32222     23444443 7888874


Q ss_pred             CCCee
Q 013362          238 LPGRI  242 (444)
Q Consensus       238 ~pGri  242 (444)
                       .|+.
T Consensus       237 -~g~~  240 (286)
T 1q7f_A          237 -DGQL  240 (286)
T ss_dssp             -TSCE
T ss_pred             -CCCE
Confidence             4544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.24  E-value=4.1e-10  Score=102.94  Aligned_cols=161  Identities=13%  Similarity=0.175  Sum_probs=107.2

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+|++++++ .|||+|+.+++|+++|+....+.++...+..                   ...          +..|.
T Consensus        31 ~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~-------------------~~~----------~~~p~   80 (286)
T 1q7f_A           31 EPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQFGECGKR-------------------DSQ----------LLYPN   80 (286)
T ss_dssp             CEEEEEECTTC-CEEEEEGGGTEEEEECTTSCEEEEECCBSSS-------------------TTC----------BSSEE
T ss_pred             CCceEEECCCC-CEEEEECCCCEEEEECCCCcEEEEecccCCC-------------------ccc----------ccCce
Confidence            69999999887 5999999999999999875555555432211                   012          78899


Q ss_pred             eeEE-cCCCeEEEEeCC-CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMK-SEDDNLLIINRS-FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~-d~dG~LYIADag-nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++ +.+|.|||++.+ +++|+++|.....+.++..+..                                    ..  
T Consensus        81 ~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~------------------------------------~~--  122 (286)
T 1q7f_A           81 RVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATIL------------------------------------QH--  122 (286)
T ss_dssp             EEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTC------------------------------------SC--
T ss_pred             EEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccC------------------------------------CC--
Confidence            9999 577999999976 8999999964333433321100                                    00  


Q ss_pred             cccccccc-ccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccceeeeeec
Q 013362          160 AGLISSSI-AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSL  237 (444)
Q Consensus       160 a~~~Sgla-~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~i~~v~~  237 (444)
                         |.+++ ..++.|||+|..+++|++++.++..+.++...  +.+..|..+.+ |-++     .++++...+.|..++.
T Consensus       123 ---~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~p~~i~~~~~g~-----l~v~~~~~~~i~~~~~  192 (286)
T 1q7f_A          123 ---PRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--KHLEFPNGVVVNDKQE-----IFISDNRAHCVKVFNY  192 (286)
T ss_dssp             ---EEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--TTCSSEEEEEECSSSE-----EEEEEGGGTEEEEEET
T ss_pred             ---ceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC--CccCCcEEEEECCCCC-----EEEEECCCCEEEEEcC
Confidence               12222 23567999999999999999887777776432  23333433332 2121     2346666788888886


Q ss_pred             CCCe
Q 013362          238 LPGR  241 (444)
Q Consensus       238 ~pGr  241 (444)
                       .|+
T Consensus       193 -~g~  195 (286)
T 1q7f_A          193 -EGQ  195 (286)
T ss_dssp             -TCC
T ss_pred             -CCC
Confidence             444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.22  E-value=1.2e-10  Score=104.87  Aligned_cols=153  Identities=11%  Similarity=0.073  Sum_probs=102.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+|+++++| .|||+|..++.|.+++..+.......                        ...          +..|.
T Consensus       109 ~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~------------------------~~~----------~~~p~  153 (270)
T 1rwi_B          109 YPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP------------------------FTG----------LNDPD  153 (270)
T ss_dssp             SEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECC------------------------CCS----------CCSCC
T ss_pred             CCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeec------------------------ccc----------CCCce
Confidence            58999999887 59999999999999975433221110                        011          67899


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +|+++++|+|||++.++++|+++|+.++.+.....+.                                      +   .
T Consensus       154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--------------------------------------~---~  192 (270)
T 1rwi_B          154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD--------------------------------------I---T  192 (270)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS--------------------------------------C---C
T ss_pred             eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC--------------------------------------C---C
Confidence            9999999999999999999999999876654322100                                      0   0


Q ss_pred             ccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccceeeeeecC
Q 013362          162 LISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSLL  238 (444)
Q Consensus       162 ~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~i~~v~~~  238 (444)
                      .|.+++. .++.||+++..+++|++++++++....+...   .+..|..+.+ |-++     .++++..+++|+.+++.
T Consensus       193 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~~~p~~i~~~~~g~-----l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          193 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT---GLNTPLAVAVDSDRT-----VYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC---SCSCEEEEEECTTCC-----EEEEEGGGTEEEEECCC
T ss_pred             CceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC---CCCCceeEEECCCCC-----EEEEECCCCEEEEEcCC
Confidence            1223333 2459999999999999999988766553222   1233433332 2111     33466677778777654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.21  E-value=2.3e-10  Score=102.92  Aligned_cols=155  Identities=10%  Similarity=0.032  Sum_probs=100.8

Q ss_pred             CcceEEEecCCCEEEE-EeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYI-VDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYV-ADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|.+|+++++| .||| +|+.++.|++++..++....+..                        ..          +..|
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~------------------------~~----------~~~p   69 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPF------------------------NG----------LYQP   69 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCC------------------------CS----------CCSC
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEee------------------------CC----------cCCc
Confidence            79999999888 4999 99999999999865544322210                        01          6779


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      ++|+++++|+|||++. +++|+++|+.++.+..+..+..                                    ..   
T Consensus        70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~------------------------------------~~---  109 (270)
T 1rwi_B           70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGL------------------------------------NY---  109 (270)
T ss_dssp             CCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSC------------------------------------SS---
T ss_pred             ceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCc------------------------------------CC---
Confidence            9999999999999999 8999999998766554431100                                    00   


Q ss_pred             cccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeec-c-cccCCcccceeeeeec
Q 013362          161 GLISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAV-A-GGHQGSWTDHIQRCSL  237 (444)
Q Consensus       161 ~~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~-~-~~~~g~~~~~i~~v~~  237 (444)
                        |.+++. .++.||++|..+++|.+++..+.....+.   .+.+..      |...+++. + .++++.....|.+++.
T Consensus       110 --p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---~~~~~~------p~~i~~~~~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          110 --PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP---FTGLND------PDGVAVDNSGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             --EEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC---CCSCCS------CCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             --CcceEECCCCCEEEEECCCCEEEEEECCCceeEeec---cccCCC------ceeEEEeCCCCEEEEECCCCEEEEEec
Confidence              122222 25679999999999999987665544321   112223      33333332 2 2335555678888887


Q ss_pred             CCCee
Q 013362          238 LPGRI  242 (444)
Q Consensus       238 ~pGri  242 (444)
                      ..++.
T Consensus       179 ~~~~~  183 (270)
T 1rwi_B          179 ESNNQ  183 (270)
T ss_dssp             TTCCE
T ss_pred             CCCce
Confidence            66543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.18  E-value=8.3e-10  Score=104.45  Aligned_cols=168  Identities=12%  Similarity=0.085  Sum_probs=107.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCe--EEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHA--IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHa--IRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      +|.||+++++|+ |||||..++.  |.++|..+|.+++++....                                 ...
T Consensus        73 ~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~---------------------------------~~~  118 (306)
T 2p4o_A           73 KVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPD---------------------------------AIF  118 (306)
T ss_dssp             EEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTT---------------------------------CSC
T ss_pred             CceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCC---------------------------------ccc
Confidence            589999998885 9999987654  8889988999988775411                                 233


Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      |.+++...++++|++|..+++||++|+.++..+.... .+...     .                      .....+++.
T Consensus       119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~-~~~~~-----~----------------------~~~~~~~~~  170 (306)
T 2p4o_A          119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE-HPMLA-----R----------------------SNSESVFPA  170 (306)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE-CGGGS-----C----------------------SSTTCCSCS
T ss_pred             cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEE-CCccc-----c----------------------ccccCCCCc
Confidence            4566666668899999999999999998764322211 00000     0                      000001111


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCC-CeEEEeeeccccccCCceeeeeccceeeec-c-cccCCcccceeeeee
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRES-GVCSNFQFSNFAILGLPYWFAFPLERVYAV-A-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t-G~vST~~fsg~g~lg~P~~l~~PL~~v~~~-~-~~~~g~~~~~i~~v~  236 (444)
                         +.++...++.||++|+.+++|.++++++ |.+....     .+   ..+..|-+.+.+. | .++++..+++|.+|+
T Consensus       171 ---pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~-----~~---~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          171 ---ANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE-----IF---VEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             ---EEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCE-----EE---EESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             ---CCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccE-----EE---eccCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence               3445456779999999999999999985 5432211     00   0113455555532 3 334666778899998


Q ss_pred             cCCCeee
Q 013362          237 LLPGRID  243 (444)
Q Consensus       237 ~~pGri~  243 (444)
                      .. |++.
T Consensus       240 ~~-G~~~  245 (306)
T 2p4o_A          240 PD-RSTT  245 (306)
T ss_dssp             TT-CCEE
T ss_pred             CC-CCEE
Confidence            64 7653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.15  E-value=9.6e-11  Score=126.02  Aligned_cols=121  Identities=16%  Similarity=0.254  Sum_probs=90.1

Q ss_pred             CcceEEEecCCCEEEEEeCCC-CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSEN-HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeN-HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.|||+|+.++.||++|.++ ++|.++++......++..                        ..          |..|
T Consensus       497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~------------------------~~----------l~~P  542 (699)
T 1n7d_A          497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT------------------------EN----------IQWP  542 (699)
T ss_dssp             CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC------------------------SS----------CSSC
T ss_pred             CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe------------------------CC----------CCCc
Confidence            699999999888999999876 899998874222222210                        12          8889


Q ss_pred             ceeEEcCC-CeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKSED-DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d~d-G~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      .+|+++.+ +.||++|+++++|+++|++....++++.....                                  .+.  
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~----------------------------------~~~--  586 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR----------------------------------LAH--  586 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSS----------------------------------CSS--
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCc----------------------------------CCC--
Confidence            99999964 89999999999999999975555555421000                                  011  


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                         |.+|+.+++.||++|..+++|++++..+|...+
T Consensus       587 ---P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          587 ---PFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             ---CCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred             ---ceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence               335666788999999999999999998887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.14  E-value=2e-09  Score=97.02  Aligned_cols=155  Identities=17%  Similarity=0.139  Sum_probs=104.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++| .|||++..++.|.++|. ++.+..+....                       .          +..|.
T Consensus       142 ~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~-----------------------~----------~~~~~  186 (299)
T 2z2n_A          142 YPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPT-----------------------P----------ASGPV  186 (299)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSS-----------------------T----------TCCEE
T ss_pred             CCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCC-----------------------C----------CCcce
Confidence            58999999887 69999999999999998 78776542210                       1          56789


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +++++++|.|||++..+++|+++|+ +|.+..+......                                   ..    
T Consensus       187 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~-----------------------------------~~----  226 (299)
T 2z2n_A          187 GITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPN-----------------------------------AR----  226 (299)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTT-----------------------------------CC----
T ss_pred             eEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCC-----------------------------------CC----
Confidence            9999999999999999999999999 8887765321000                                   00    


Q ss_pred             ccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecccccCCcccceeeeeecCCC
Q 013362          162 LISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPG  240 (444)
Q Consensus       162 ~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pG  240 (444)
                       |.+++. .++.|||++..+++|.++++ +|.+..+.+.+  ..+.|..+.+      ..+...-++....|.++++..+
T Consensus       227 -~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~------~~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          227 -PHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQI--KSAEPHGICF------DGETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             -EEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSS--SSCCEEEEEE------CSSCEEEEETTTEEEEEEEC--
T ss_pred             -ceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCC--CCCccceEEe------cCCCEEEEecCCcEEEEEcCcc
Confidence             122222 35679999999999999999 57777664432  1233333332      2333333333567777777655


Q ss_pred             e
Q 013362          241 R  241 (444)
Q Consensus       241 r  241 (444)
                      +
T Consensus       297 ~  297 (299)
T 2z2n_A          297 N  297 (299)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.14  E-value=1.2e-09  Score=103.27  Aligned_cols=152  Identities=9%  Similarity=-0.016  Sum_probs=102.9

Q ss_pred             CcceEEEec-CCCEEEEEeCCC-----------------CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCccc
Q 013362            2 RPAASFYHK-DDDCLYIVDSEN-----------------HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFER   63 (444)
Q Consensus         2 ~P~GIa~D~-~g~~LYVADTeN-----------------HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~   63 (444)
                      .|.++++|+ +| .|||+|+.+                 ++|.++|..++.++++..                       
T Consensus       127 ~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----------------------  182 (322)
T 2fp8_A          127 WLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----------------------  182 (322)
T ss_dssp             CEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----------------------
T ss_pred             ccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-----------------------
Confidence            589999998 77 699999875                 467777776676655421                       


Q ss_pred             ccCccccCCCCCCCCCcceeEEcCCCe-EEEEeCCCCEEEEEECCCCc---EEEeecCCccceeecceehhhhhhhhhcC
Q 013362           64 DNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLASGE---IKEAVKGFSKVLEICGVLVMEKVFLLKQM  139 (444)
Q Consensus        64 ~a~~~~~~~~~~~Ln~P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~---I~TiagG~~~~~~~~G~li~~~~a~l~~~  139 (444)
                        .          +..|.+|+++++|. |||+|+.+++|+++++.++.   .+.++.                       
T Consensus       183 --~----------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-----------------------  227 (322)
T 2fp8_A          183 --E----------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-----------------------  227 (322)
T ss_dssp             --E----------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-----------------------
T ss_pred             --C----------CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-----------------------
Confidence              1          67799999999875 99999999999999987532   222110                       


Q ss_pred             CcccccccccccccccCCCccccccccc-ccCCeEEEEeCC----------CCeEEEEeCCCCeEEEeeeccccccCCce
Q 013362          140 PQDWLLHQIDSSCSLKELPYAGLISSSI-AFQNHILLCDIV----------GQRIMRLNRESGVCSNFQFSNFAILGLPY  208 (444)
Q Consensus       140 ~~~~~~~~~~~~~~~~Gip~a~~~Sgla-~~~~~LyIADT~----------nhRIRkvdl~tG~vST~~fsg~g~lg~P~  208 (444)
                                    ..| |     .+++ ..+++|||++..          +++|.+++.++..+..+...+-..+..|+
T Consensus       228 --------------~~g-P-----~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~  287 (322)
T 2fp8_A          228 --------------IPN-P-----GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFE  287 (322)
T ss_dssp             --------------CSS-E-----EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCC
T ss_pred             --------------CCC-C-----CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccce
Confidence                          001 2     2222 235689999987          68999999987767777644311244444


Q ss_pred             eeeeccceeeecc-cccCCcccceeeeeecC
Q 013362          209 WFAFPLERVYAVA-GGHQGSWTDHIQRCSLL  238 (444)
Q Consensus       209 ~l~~PL~~v~~~~-~~~~g~~~~~i~~v~~~  238 (444)
                      .+..      ..+ .++.+..+++|.+|++.
T Consensus       288 ~~~~------~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          288 QIQE------HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEE------ETTEEEEECSSCSEEEEEEC-
T ss_pred             EEEE------eCCEEEEeecCCCceEEEecc
Confidence            4433      233 33566778889888763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.13  E-value=2.3e-09  Score=96.74  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=89.5

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++|+ |||++..++.|.++|. ++.+..+...+                       .          +..|.
T Consensus       147 ~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~-----------------------~----------~~~~~  191 (300)
T 2qc5_A          147 YPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPT-----------------------N----------AAAPV  191 (300)
T ss_dssp             CEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSS-----------------------T----------TCCEE
T ss_pred             CceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCC-----------------------C----------CCCcc
Confidence            589999998885 9999999999999998 67665542110                       1          66799


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +++++.+|+|||++..+++|+++|+ +|.+..+......                                   ..    
T Consensus       192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~-----------------------------------~~----  231 (300)
T 2qc5_A          192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPN-----------------------------------AR----  231 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTT-----------------------------------CC----
T ss_pred             eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCC-----------------------------------CC----
Confidence            9999999999999999999999998 6777665321000                                   00    


Q ss_pred             ccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362          162 LISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       162 ~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~~  197 (444)
                       |.+++. .++.|||++..+++|.++++ +|.+..+.
T Consensus       232 -~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~  266 (300)
T 2qc5_A          232 -PHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQ  266 (300)
T ss_dssp             -EEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEE
T ss_pred             -ceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEE
Confidence             222332 35679999999999999999 57766654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.12  E-value=2.5e-09  Score=96.52  Aligned_cols=157  Identities=12%  Similarity=0.145  Sum_probs=109.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+|++|++| .|||++..++.|.++|.. +.+..+.-.                       ..          +..|+
T Consensus        21 ~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~~~~~-----------------------~~----------~~~~~   65 (300)
T 2qc5_A           21 GPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKEFEVP-----------------------TP----------DAKVM   65 (300)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECS-----------------------ST----------TCCEE
T ss_pred             CcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEEEECC-----------------------CC----------CCcce
Confidence            69999999887 599999999999999987 766653210                       01          56799


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +|+++++|+|||++.++++|+++|+. |.+..+......                                   .     
T Consensus        66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~-----------------------------------~-----  104 (300)
T 2qc5_A           66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPD-----------------------------------S-----  104 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT-----------------------------------C-----
T ss_pred             eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCC-----------------------------------C-----
Confidence            99999999999999999999999998 887655421000                                   0     


Q ss_pred             ccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccceeeeeecCC
Q 013362          162 LISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSLLP  239 (444)
Q Consensus       162 ~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~i~~v~~~p  239 (444)
                      .|.+++. .++.|||++..+++|.+++.+ |.+..+.+..  ....|..+.+ |-+++     ++.+...+.|.+++. .
T Consensus       105 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~--~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A          105 GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN--KGSYPAFITLGSDNAL-----WFTENQNNSIGRITN-T  175 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-T
T ss_pred             CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC--CCCCceeEEECCCCCE-----EEEecCCCeEEEECC-C
Confidence            0122222 367899999999999999998 7777664322  2233444333 22222     234444677888887 6


Q ss_pred             Ceee
Q 013362          240 GRID  243 (444)
Q Consensus       240 Gri~  243 (444)
                      |++.
T Consensus       176 g~~~  179 (300)
T 2qc5_A          176 GKLE  179 (300)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            7654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.06  E-value=7e-09  Score=93.50  Aligned_cols=156  Identities=13%  Similarity=0.113  Sum_probs=106.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+|+++++| .|||++..++.|.++|+ ++.+..+....                       .          ...|.
T Consensus       100 ~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~-----------------------~----------~~~~~  144 (299)
T 2z2n_A          100 APYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPN-----------------------K----------GSYPS  144 (299)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSS-----------------------T----------TCCEE
T ss_pred             CceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCC-----------------------C----------CCCCc
Confidence            68999999877 69999999999999998 77665442110                       1          55689


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +++++++|.||+++..+++|+++|+ +|++..+......                                   ..    
T Consensus       145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~-----------------------------------~~----  184 (299)
T 2z2n_A          145 FITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPA-----------------------------------SG----  184 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTT-----------------------------------CC----
T ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCC-----------------------------------Cc----
Confidence            9999998999999999999999999 8888765321000                                   00    


Q ss_pred             ccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccceeeeeecCC
Q 013362          162 LISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSLLP  239 (444)
Q Consensus       162 ~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~i~~v~~~p  239 (444)
                       |.+++. ..+.||+++..+++|.++++ +|.+..+...  .....|..+.+ |-+++     ++++.....|.+++. .
T Consensus       185 -~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~--~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~d~-~  254 (299)
T 2z2n_A          185 -PVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIP--TPNARPHAITAGAGIDL-----WFTEWGANKIGRLTS-N  254 (299)
T ss_dssp             -EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS--STTCCEEEEEECSTTCE-----EEEETTTTEEEEEET-T
T ss_pred             -ceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECC--CCCCCceeEEECCCCCE-----EEeccCCceEEEECC-C
Confidence             122222 35679999999999999999 8887765432  12233333332 22222     223334577888887 5


Q ss_pred             Cee
Q 013362          240 GRI  242 (444)
Q Consensus       240 Gri  242 (444)
                      |++
T Consensus       255 g~~  257 (299)
T 2z2n_A          255 NII  257 (299)
T ss_dssp             TEE
T ss_pred             Cce
Confidence            654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.05  E-value=3.3e-08  Score=91.24  Aligned_cols=160  Identities=12%  Similarity=0.042  Sum_probs=106.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|++++++| .|||++.+++.|.++|+.+|.++++.... .               +    ..          ++.|.
T Consensus        70 ~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~---------------~----~~----------~~~~~  118 (296)
T 3e5z_A           70 HQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIADSF-E---------------G----KK----------LNSPN  118 (296)
T ss_dssp             SEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEE-T---------------T----EE----------CCCCC
T ss_pred             CcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeecc-C---------------C----CC----------CCCCC
Confidence            58899999988 59999999999999999899888775321 0               0    12          77899


Q ss_pred             eeEEcCCCeEEEEeC-----------------CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccc
Q 013362           82 HLMKSEDDNLLIINR-----------------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWL  144 (444)
Q Consensus        82 gL~~d~dG~LYIADa-----------------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~  144 (444)
                      +++++++|.|||+|.                 ..+.||++|+. |.+..+..+...+                       
T Consensus       119 ~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-----------------------  174 (296)
T 3e5z_A          119 DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP-----------------------  174 (296)
T ss_dssp             CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE-----------------------
T ss_pred             CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC-----------------------
Confidence            999999999999986                 25699999987 8887765422110                       


Q ss_pred             cccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCC-CCeE-EEeeeccccccCCceeeee-ccceeeecc
Q 013362          145 LHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE-SGVC-SNFQFSNFAILGLPYWFAF-PLERVYAVA  221 (444)
Q Consensus       145 ~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~-tG~v-ST~~fsg~g~lg~P~~l~~-PL~~v~~~~  221 (444)
                                .|+++       ...++.| ++|+.+++|.+++++ +|.+ +....- ....+.|..+.+ |      .|
T Consensus       175 ----------~gi~~-------s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~------~G  229 (296)
T 3e5z_A          175 ----------NGLAF-------LPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDA------GG  229 (296)
T ss_dssp             ----------EEEEE-------CTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBT------TS
T ss_pred             ----------ccEEE-------CCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECC------CC
Confidence                      01111       1223345 999999999999997 6766 332211 123344444333 2      22


Q ss_pred             cccCCcccceeeeeecCCCeee
Q 013362          222 GGHQGSWTDHIQRCSLLPGRID  243 (444)
Q Consensus       222 ~~~~g~~~~~i~~v~~~pGri~  243 (444)
                      +...++ ...|..++.. |+..
T Consensus       230 ~l~v~~-~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          230 LIWASA-GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             CEEEEE-TTEEEEECTT-SCEE
T ss_pred             CEEEEc-CCeEEEECCC-CCEE
Confidence            322222 5678888875 6543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.04  E-value=8.7e-09  Score=95.12  Aligned_cols=158  Identities=14%  Similarity=0.096  Sum_probs=108.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|++|+++++.||++|+.++.|+++|+.++ +.++...                                   ...|.
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~-----------------------------------~~~~~   72 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHP-----------------------------------SHHQN   72 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESS-----------------------------------CSSEE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECC-----------------------------------CCCcc
Confidence            47899999999889999999999999999877 6555321                                   33478


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +|+++++|.|||++.++++|+++|+.+|+++.+........                                ...    
T Consensus        73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~--------------------------------~~~----  116 (296)
T 3e5z_A           73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKK--------------------------------LNS----  116 (296)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEE--------------------------------CCC----
T ss_pred             eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCC--------------------------------CCC----
Confidence            99999999999999999999999999999887763211000                                000    


Q ss_pred             cccccc-ccCCeEEEEeCC-----------------CCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeeeccc
Q 013362          162 LISSSI-AFQNHILLCDIV-----------------GQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAG  222 (444)
Q Consensus       162 ~~Sgla-~~~~~LyIADT~-----------------nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~  222 (444)
                       +..++ ..++.||++|+.                 +.+|.+++.. |.+..+.    +.+..|..+.+ |-+..     
T Consensus       117 -~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----~~~~~~~gi~~s~dg~~-----  185 (296)
T 3e5z_A          117 -PNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI----RDRVKPNGLAFLPSGNL-----  185 (296)
T ss_dssp             -CCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE----CCCSSEEEEEECTTSCE-----
T ss_pred             -CCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee----cCCCCCccEEECCCCCE-----
Confidence             11212 246789999862                 4689999988 6666542    12333333322 22221     


Q ss_pred             ccCCcccceeeeeecC-CCee
Q 013362          223 GHQGSWTDHIQRCSLL-PGRI  242 (444)
Q Consensus       223 ~~~g~~~~~i~~v~~~-pGri  242 (444)
                      +++++....|..+++. +|++
T Consensus       186 lv~~~~~~~i~~~~~~~~g~~  206 (296)
T 3e5z_A          186 LVSDTGDNATHRYCLNARGET  206 (296)
T ss_dssp             EEEETTTTEEEEEEECSSSCE
T ss_pred             EEEeCCCCeEEEEEECCCCcC
Confidence            2455666788888876 6765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=8.7e-09  Score=98.95  Aligned_cols=85  Identities=13%  Similarity=0.083  Sum_probs=66.6

Q ss_pred             CcceEEEecCCCEEEEEeCC-----CCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSE-----NHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe-----NHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      +|+||++|+++ .|||+|++     .++|.++|+.+|. +.++.-....               +    ..         
T Consensus        68 ~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~---------------~----~~---------  118 (343)
T 2qe8_A           68 TVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI---------------T----LS---------  118 (343)
T ss_dssp             CEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---------------S----CT---------
T ss_pred             EeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh---------------c----cc---------
Confidence            69999999886 79999998     5999999999998 4454321101               0    01         


Q ss_pred             CCCCcceeEEcC-CCeEEEEeC---CCCEEEEEECCCCcEEEeec
Q 013362           76 SLIFPWHLMKSE-DDNLLIINR---SFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        76 ~Ln~P~gL~~d~-dG~LYIADa---gnh~IrkIDl~tG~I~Tiag  116 (444)
                       ..+|.+|+++. +|.+||+|.   .++.|+++|+.+|++..+..
T Consensus       119 -~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~  162 (343)
T 2qe8_A          119 -NSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ  162 (343)
T ss_dssp             -TCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred             -ccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence             45688999995 489999999   89999999999998777653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.94  E-value=9.5e-08  Score=91.38  Aligned_cols=162  Identities=12%  Similarity=0.130  Sum_probs=109.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|++++++  ++.|||+...++.|..+|+.++.+ .++.    .                                +..|
T Consensus        45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~--------------------------------~~~p   86 (328)
T 3dsm_A           45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT----G--------------------------------FTSP   86 (328)
T ss_dssp             CEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE----C--------------------------------CSSE
T ss_pred             cceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC----C--------------------------------CCCC
Confidence            47889985  568999999999999999998866 5551    1                                4458


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEE-eecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKE-AVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~T-iagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      ++|+++++|.|||++.+.++|.+||+.++++.. +..|...     ++                                
T Consensus        87 ~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----~~--------------------------------  129 (328)
T 3dsm_A           87 RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----ME--------------------------------  129 (328)
T ss_dssp             EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----TT--------------------------------
T ss_pred             cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----cc--------------------------------
Confidence            999997778999999889999999999998763 3322100     00                                


Q ss_pred             ccccccccccCCeEEEEeC-CCCeEEEEeCCCCeEE-EeeeccccccCCceeeee-ccceeeeccccc-CCc----ccce
Q 013362          160 AGLISSSIAFQNHILLCDI-VGQRIMRLNRESGVCS-NFQFSNFAILGLPYWFAF-PLERVYAVAGGH-QGS----WTDH  231 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT-~nhRIRkvdl~tG~vS-T~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~-~g~----~~~~  231 (444)
                      ...|.+++..++.||+++. .+++|.++|++++.+. ++.. +    ..|..+.+ |-++.|-....- .+.    ....
T Consensus       130 ~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g----~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~  204 (328)
T 3dsm_A          130 SGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTI-G----IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS  204 (328)
T ss_dssp             TCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-S----SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE
T ss_pred             CCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-C----CCccceEEcCCCCEEEEECCCccCCccccCCce
Confidence            0113344557889999998 4899999999998864 4432 1    12333333 444544333221 100    1367


Q ss_pred             eeeeecCCCeee
Q 013362          232 IQRCSLLPGRID  243 (444)
Q Consensus       232 i~~v~~~pGri~  243 (444)
                      |..+|...+++.
T Consensus       205 v~~id~~t~~v~  216 (328)
T 3dsm_A          205 LYRIDAETFTVE  216 (328)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCeEE
Confidence            888898888764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.94  E-value=3.6e-08  Score=92.51  Aligned_cols=120  Identities=11%  Similarity=0.138  Sum_probs=88.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|+++|++| .||+++..+++|.+++.. |.+++++... .               |    ..          +++|.
T Consensus        87 ~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~-~---------------~----~~----------~~~~~  134 (305)
T 3dr2_A           87 FTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRY-A---------------G----KR----------LNSPN  134 (305)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEE-T---------------T----EE----------CSCCC
T ss_pred             ccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEecc-C---------------C----Cc----------cCCCC
Confidence            57899999887 499999999999999975 8887776431 0               0    12          88999


Q ss_pred             eeEEcCCCeEEEEeC-----------------CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccc
Q 013362           82 HLMKSEDDNLLIINR-----------------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWL  144 (444)
Q Consensus        82 gL~~d~dG~LYIADa-----------------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~  144 (444)
                      +++++++|.||++|.                 ..+.|+++|+++|+++.+. +...+                       
T Consensus       135 ~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p-----------------------  190 (305)
T 3dr2_A          135 DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP-----------------------  190 (305)
T ss_dssp             CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE-----------------------
T ss_pred             CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC-----------------------
Confidence            999999999999985                 2478999999889887665 21110                       


Q ss_pred             cccccccccccCCCcccccccccccCCeEEEEeCCC-----CeEEEEeCCCCeEE
Q 013362          145 LHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG-----QRIMRLNRESGVCS  194 (444)
Q Consensus       145 ~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~n-----hRIRkvdl~tG~vS  194 (444)
                                .|+.       +..++..||++|+.+     ++|+++++.++.++
T Consensus       191 ----------~gl~-------~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~  228 (305)
T 3dr2_A          191 ----------NGLA-------FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH  228 (305)
T ss_dssp             ----------EEEE-------ECTTSSEEEEEECCC---CCCEEEEEEEETTEEE
T ss_pred             ----------cceE-------EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc
Confidence                      0111       123455799999984     89999998876543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.90  E-value=3.3e-08  Score=94.54  Aligned_cols=160  Identities=16%  Similarity=0.150  Sum_probs=106.2

Q ss_pred             CcceEEEecCCCEEEEEeCC-CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSE-NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe-NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|.+|++  +++.|||++.+ ++.|.++|+.++.+......                                   -..|
T Consensus       132 ~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-----------------------------------g~~p  174 (328)
T 3dsm_A          132 STEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-----------------------------------GIQP  174 (328)
T ss_dssp             BCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-----------------------------------SSCB
T ss_pred             CcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-----------------------------------CCCc
Confidence            7999999  46689999984 89999999998876432211                                   1236


Q ss_pred             ceeEEcCCCeEEEEeCCC----------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccc
Q 013362           81 WHLMKSEDDNLLIINRSF----------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDS  150 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagn----------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~  150 (444)
                      .+++++++|.+|+++.++          ++|.+||+.++++..... .+.     |                        
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~-----g------------------------  224 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKL-----G------------------------  224 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCT-----T------------------------
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-cCC-----C------------------------
Confidence            788999999999999987          899999999998763221 100     0                        


Q ss_pred             cccccCCCccccccccc--ccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-c-cceeeecccccCC
Q 013362          151 SCSLKELPYAGLISSSI--AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-P-LERVYAVAGGHQG  226 (444)
Q Consensus       151 ~~~~~Gip~a~~~Sgla--~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-P-L~~v~~~~~~~~g  226 (444)
                                ..|.+++  ..++.||+++.   .|.++|++++.+....+...+ .+.|+.+.+ | -.++|     +++
T Consensus       225 ----------~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~ly-----va~  285 (328)
T 3dsm_A          225 ----------DWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVY-----VAD  285 (328)
T ss_dssp             ----------CCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEE-----EEE
T ss_pred             ----------CCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEE-----EEc
Confidence                      0012222  24678999987   899999999987543322211 334544433 3 22222     244


Q ss_pred             ----cccceeeeeecCCCeeeEEEee
Q 013362          227 ----SWTDHIQRCSLLPGRIDIKVNV  248 (444)
Q Consensus       227 ----~~~~~i~~v~~~pGri~i~v~v  248 (444)
                          .....|..|+.. |++.=++.+
T Consensus       286 ~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          286 AIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             CTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             ccccccCCEEEEECCC-CCEEEEEEe
Confidence                457788888887 876544443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.89  E-value=1e-07  Score=89.38  Aligned_cols=157  Identities=13%  Similarity=0.084  Sum_probs=106.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|.+|+++++.||++|+.+++|.+++. +|.++++...                                   -..|.
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~-----------------------------------~~~~~   89 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDA-----------------------------------TAFTN   89 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEES-----------------------------------CSCEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCC-----------------------------------CCccc
Confidence            46799999999899999999999999997 6666655321                                   23477


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +++++.+|.||+++.++++|+++|++ |.+++++.....      ..                      .    ..    
T Consensus        90 gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~------~~----------------------~----~~----  132 (305)
T 3dr2_A           90 GNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG------KR----------------------L----NS----  132 (305)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT------EE----------------------C----SC----
T ss_pred             eeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC------Cc----------------------c----CC----
Confidence            89999999999999999999999986 888877631110      00                      0    00    


Q ss_pred             ccccc-cccCCeEEEEeC-----------------CCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeeeccc
Q 013362          162 LISSS-IAFQNHILLCDI-----------------VGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAG  222 (444)
Q Consensus       162 ~~Sgl-a~~~~~LyIADT-----------------~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~  222 (444)
                       |..+ ...++.||++|+                 ....|.++++++|.+..+.  +   +..|.-+.+ |-+..    .
T Consensus       133 -~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~---~~~p~gl~~spdg~~----l  202 (305)
T 3dr2_A          133 -PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D---LDHPNGLAFSPDEQT----L  202 (305)
T ss_dssp             -CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E---ESSEEEEEECTTSSE----E
T ss_pred             -CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c---CCCCcceEEcCCCCE----E
Confidence             1111 234678999885                 1468999999999887763  2   233333322 33221    1


Q ss_pred             ccCCcc-----cceeeeeecCCCe
Q 013362          223 GHQGSW-----TDHIQRCSLLPGR  241 (444)
Q Consensus       223 ~~~g~~-----~~~i~~v~~~pGr  241 (444)
                      +++++.     .++|.++++..+.
T Consensus       203 yv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          203 YVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             EEEECCC---CCCEEEEEEEETTE
T ss_pred             EEEecCCcCCCCCEEEEEEecCCC
Confidence            223333     4788888887654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.88  E-value=1e-07  Score=87.26  Aligned_cols=166  Identities=11%  Similarity=0.091  Sum_probs=104.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEe-ccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETV-YPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTV-AGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|.+++++++++.|||++..+ .|.++|+. |.+..+ .... .               +    ..          .+.|
T Consensus        72 ~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~-~---------------~----~~----------~~~~  119 (314)
T 1pjx_A           72 IPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDS-E---------------G----RR----------MQGC  119 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCT-T---------------S----CB----------CBCC
T ss_pred             CCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccC-C---------------C----cc----------ccCC
Confidence            588999998834899999865 89999988 888776 5321 0               0    01          6779


Q ss_pred             ceeEEcCCCeEEEEeCCC---------------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccc
Q 013362           81 WHLMKSEDDNLLIINRSF---------------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL  145 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagn---------------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~  145 (444)
                      .+++++++|+|||++.++               +.|+++|++ |.+..+..+...+                        
T Consensus       120 ~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~------------------------  174 (314)
T 1pjx_A          120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP------------------------  174 (314)
T ss_dssp             CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE------------------------
T ss_pred             cCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc------------------------
Confidence            999999999999999876               799999987 8776654311100                        


Q ss_pred             ccccccccccCCCccccccccc-ccCCeEEEEeCCCCeEEEEeCC-CCeEEEee-ecccc-c-cCCceeeeeccceeeec
Q 013362          146 HQIDSSCSLKELPYAGLISSSI-AFQNHILLCDIVGQRIMRLNRE-SGVCSNFQ-FSNFA-I-LGLPYWFAFPLERVYAV  220 (444)
Q Consensus       146 ~~~~~~~~~~Gip~a~~~Sgla-~~~~~LyIADT~nhRIRkvdl~-tG~vST~~-fsg~g-~-lg~P~~l~~PL~~v~~~  220 (444)
                               .++.+    +.+. ..++.||++|+.+++|.+++++ +|.+.... +.... . ++.|..      .+++.
T Consensus       175 ---------~~i~~----~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------i~~d~  235 (314)
T 1pjx_A          175 ---------NGIAV----RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG------MDFDE  235 (314)
T ss_dssp             ---------EEEEE----EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE------EEEBT
T ss_pred             ---------ceEEE----ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc------eEECC
Confidence                     01111    1000 1234799999999999999987 56654322 11111 1 133333      33322


Q ss_pred             -ccc-cCCcccceeeeeecCCCeee
Q 013362          221 -AGG-HQGSWTDHIQRCSLLPGRID  243 (444)
Q Consensus       221 -~~~-~~g~~~~~i~~v~~~pGri~  243 (444)
                       |+. +++.....|.+++...|++.
T Consensus       236 ~G~l~v~~~~~~~i~~~d~~~g~~~  260 (314)
T 1pjx_A          236 DNNLLVANWGSSHIEVFGPDGGQPK  260 (314)
T ss_dssp             TCCEEEEEETTTEEEEECTTCBSCS
T ss_pred             CCCEEEEEcCCCEEEEEcCCCCcEe
Confidence             222 23334567888887666643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.85  E-value=9.5e-08  Score=89.51  Aligned_cols=162  Identities=6%  Similarity=-0.063  Sum_probs=96.3

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      |.+++++++|+ |||+.  ++.|.++|+.++.+++++...                              ....++.|.+
T Consensus        56 ~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~~~~~~~~------------------------------~~~~~~~~~d  102 (297)
T 3g4e_A           56 VSSVALRQSGG-YVATI--GTKFCALNWKEQSAVVLATVD------------------------------NDKKNNRFND  102 (297)
T ss_dssp             EEEEEEBTTSS-EEEEE--TTEEEEEETTTTEEEEEEECC------------------------------TTCSSEEEEE
T ss_pred             eEEEEECCCCC-EEEEE--CCeEEEEECCCCcEEEEEecC------------------------------CCCCCCCCCC
Confidence            55566665554 55554  355666666555555554321                              0112677999


Q ss_pred             eEEcCCCeEEEEeC-----------CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccccc
Q 013362           83 LMKSEDDNLLIINR-----------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSS  151 (444)
Q Consensus        83 L~~d~dG~LYIADa-----------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~  151 (444)
                      ++++++|.||+++.           ...+|+++|++ |.+..+..+...                               
T Consensus       103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~-------------------------------  150 (297)
T 3g4e_A          103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDI-------------------------------  150 (297)
T ss_dssp             EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESB-------------------------------
T ss_pred             EEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccc-------------------------------
Confidence            99999999999984           44689999975 666665432110                               


Q ss_pred             ccccCCCcccccccccccCCeEEEEeCCCCeEEEEeC--CCCeEEEee-ecccc-ccCCceeeeeccceeee-ccccc-C
Q 013362          152 CSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNR--ESGVCSNFQ-FSNFA-ILGLPYWFAFPLERVYA-VAGGH-Q  225 (444)
Q Consensus       152 ~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl--~tG~vST~~-fsg~g-~lg~P~~l~~PL~~v~~-~~~~~-~  225 (444)
                        +.|+++       ...++.||++|+.+++|.++++  .+|.++.-. |.... ..+.|.      +.+.+ .|+.. +
T Consensus       151 --pngi~~-------spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~------g~~~d~~G~lwva  215 (297)
T 3g4e_A          151 --SNGLDW-------SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD------GMCIDAEGKLWVA  215 (297)
T ss_dssp             --EEEEEE-------CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEE------EEEEBTTSCEEEE
T ss_pred             --ccceEE-------cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCC------eeEECCCCCEEEE
Confidence              011111       2346679999999999999986  688765321 11111 123333      33332 23332 3


Q ss_pred             CcccceeeeeecCCCeeeE
Q 013362          226 GSWTDHIQRCSLLPGRIDI  244 (444)
Q Consensus       226 g~~~~~i~~v~~~pGri~i  244 (444)
                      .....+|.+++...|++.-
T Consensus       216 ~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          216 CYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             EETTTEEEEECTTTCCEEE
T ss_pred             EcCCCEEEEEcCCCceEEE
Confidence            3334679999988887653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.82  E-value=8.3e-08  Score=92.13  Aligned_cols=128  Identities=10%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             CcceEEEecCCCEEEEEeCC----CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSE----NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe----NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      .|.||+++++| .+||+.+.    +.+|-+++  +|.+..+.... .              .+             ...|
T Consensus        18 ~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~-~--------------~~-------------~~~~   66 (343)
T 2qe8_A           18 APGNITLTPDG-RLFLSLHQFYQPEMQVAELT--QDGLIPFPPQS-G--------------NA-------------IITF   66 (343)
T ss_dssp             CEEEEEECTTS-CEEEEECGGGCCSCSEEEEE--TTEEEESCCCC-S--------------SC-------------CCCC
T ss_pred             CcceEEECCCC-CEEEEeCCCCCCceEEEEEC--CCCeecCCCcc-c--------------Cc-------------ccce
Confidence            69999999887 69999763    24788887  67665332110 0              00             0128


Q ss_pred             CCcceeEEcCCCeEEEEeCC-----CCEEEEEECCCCc-EEEeecCCccceeecceehhhhhhhhhcCCccccccccccc
Q 013362           78 IFPWHLMKSEDDNLLIINRS-----FETLWIMDLASGE-IKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSS  151 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADag-----nh~IrkIDl~tG~-I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~  151 (444)
                      .+|.+|+++++|.|||+|.+     .++|+++|+.+|+ +.++.-+.. ..                             
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~-~~-----------------------------  116 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP-IT-----------------------------  116 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-TS-----------------------------
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-hc-----------------------------
Confidence            99999999999999999998     5999999999998 444432111 00                             


Q ss_pred             ccccCCCcccccccccc--cCCeEEEEeC---CCCeEEEEeCCCCeEEEe
Q 013362          152 CSLKELPYAGLISSSIA--FQNHILLCDI---VGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       152 ~~~~Gip~a~~~Sgla~--~~~~LyIADT---~nhRIRkvdl~tG~vST~  196 (444)
                           .+ ...+.+++.  .++.+||+|+   .++.|.++|+.+|....+
T Consensus       117 -----~~-~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A          117 -----LS-NSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             -----CT-TCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             -----cc-ccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence                 00 001223333  3579999999   899999999999887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.79  E-value=1.4e-06  Score=80.36  Aligned_cols=177  Identities=11%  Similarity=0.112  Sum_probs=111.2

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++|+.|||++..++.|+.+|+.++.+......+..            ..  +. ...          -.+|.
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~------------~~--~~-~~~----------~~~~~  144 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR------------KR--TE-EVR----------PLQPR  144 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC------------CC--CS-SCC----------CCEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC------------cc--cc-ccC----------CCCCc
Confidence            5899999999999999999999999999998876433222211            00  00 001          34688


Q ss_pred             eeEEcCCC-eEEEEeC-CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSEDD-NLLIINR-SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~dG-~LYIADa-gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +++++++| .||+++. .+++|+++|+.++++.........                                .+.++. 
T Consensus       145 ~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------------------~~~~~~-  191 (353)
T 3vgz_A          145 ELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK--------------------------------MSTGLA-  191 (353)
T ss_dssp             EEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT--------------------------------TCCCCE-
T ss_pred             eEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC--------------------------------ccceEE-
Confidence            99999885 5999994 578999999999876544321000                                001111 


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE-eeeccccccCCceeeee-ccceeeecccccCCcccceeeeeec
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN-FQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSL  237 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST-~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~i~~v~~  237 (444)
                            +...++.||+++. +++|..+|+.++.+.. +.....+....+..+.+ |-+..    .++.+.....|..+++
T Consensus       192 ------~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~~~~~~~v~~~d~  260 (353)
T 3vgz_A          192 ------LDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR----AFITDSKAAEVLVVDT  260 (353)
T ss_dssp             ------EETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE----EEEEESSSSEEEEEET
T ss_pred             ------ECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE----EEEEeCCCCEEEEEEC
Confidence                  1234667999986 6799999999998753 44433333333333332 32221    1123334467888888


Q ss_pred             CCCeeeEEEe
Q 013362          238 LPGRIDIKVN  247 (444)
Q Consensus       238 ~pGri~i~v~  247 (444)
                      ..|++.-.+.
T Consensus       261 ~~~~~~~~~~  270 (353)
T 3vgz_A          261 RNGNILAKVA  270 (353)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            8887654444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.78  E-value=6.3e-07  Score=83.92  Aligned_cols=155  Identities=6%  Similarity=-0.020  Sum_probs=102.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      -|.|.+|+++++.||++|..+++|.++|+.++.+.++. .                                   -..|.
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~-----------------------------------~~~~~   57 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-M-----------------------------------DAPVS   57 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-C-----------------------------------SSCEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-C-----------------------------------CCceE
Confidence            36799999988899999999999999999888765431 0                                   12367


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +++++++|.|||+.  .+.|+++|+++|+++.++......                                    +. .
T Consensus        58 ~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~------------------------------------~~-~   98 (297)
T 3g4e_A           58 SVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDK------------------------------------KN-N   98 (297)
T ss_dssp             EEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTC------------------------------------SS-E
T ss_pred             EEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCC------------------------------------CC-C
Confidence            88999999999998  579999999999998877421100                                    00 0


Q ss_pred             ccccc-cccCCeEEEEeC-----------CCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeec-c--cccCC
Q 013362          162 LISSS-IAFQNHILLCDI-----------VGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAV-A--GGHQG  226 (444)
Q Consensus       162 ~~Sgl-a~~~~~LyIADT-----------~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~-~--~~~~g  226 (444)
                      .+..+ ...++.||+++.           ...+|.+++.. |.+..+. .+         +..|-+.+++. +  .++++
T Consensus        99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~-~~---------~~~pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYF-DQ---------VDISNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEE-EE---------ESBEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEe-ec---------cccccceEEcCCCCEEEEec
Confidence            01112 233567999874           34588888875 4444331 11         22333344432 2  33577


Q ss_pred             cccceeeeeec--CCCee
Q 013362          227 SWTDHIQRCSL--LPGRI  242 (444)
Q Consensus       227 ~~~~~i~~v~~--~pGri  242 (444)
                      +..++|..+++  ..|++
T Consensus       168 ~~~~~i~~~~~d~~~G~~  185 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQI  185 (297)
T ss_dssp             GGGTEEEEEEECTTTCCE
T ss_pred             CCCCcEEEEeccCCCCcc
Confidence            77888999876  56654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.71  E-value=5.6e-07  Score=83.68  Aligned_cols=122  Identities=12%  Similarity=0.141  Sum_probs=85.2

Q ss_pred             CcceEEEecCCCEEEEEeCCC----CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSEN----HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeN----HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      .|.+++++++| .|||++..+    +.|.++|+.++.+.++.... .                     .          -
T Consensus        88 ~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~---------------------~----------~  134 (333)
T 2dg1_A           88 NPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-S---------------------T----------A  134 (333)
T ss_dssp             SEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-S---------------------S----------C
T ss_pred             CcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-c---------------------c----------C
Confidence            57899998887 599998877    78999998777665332110 0                     0          3


Q ss_pred             CCcceeEEcCCCeEEEEeCC------CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccccc
Q 013362           78 IFPWHLMKSEDDNLLIINRS------FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSS  151 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADag------nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~  151 (444)
                      +.|.+++++++|.+||++..      +..|+++|++++++..+..+...+                              
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------------------  184 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA------------------------------  184 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE------------------------------
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcc------------------------------
Confidence            46889999999999999985      579999999888887664311100                              


Q ss_pred             ccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCC--CeEEEe
Q 013362          152 CSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRES--GVCSNF  196 (444)
Q Consensus       152 ~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t--G~vST~  196 (444)
                         .++.       +...++.||++|+.+++|.++++++  +.+.++
T Consensus       185 ---~~i~-------~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~  221 (333)
T 2dg1_A          185 ---NGIA-------LSTDEKVLWVTETTANRLHRIALEDDGVTIQPF  221 (333)
T ss_dssp             ---EEEE-------ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE
T ss_pred             ---cceE-------ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc
Confidence               0111       1123457999999999999999963  344443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.69  E-value=9.6e-07  Score=85.68  Aligned_cols=163  Identities=13%  Similarity=0.008  Sum_probs=105.6

Q ss_pred             CcceEEEecCCCEEEEEeC--CCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDS--ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADT--eNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|+|+++++++ .||++..  +.+.|++||+.+|.|.--...+.                                 -.+
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---------------------------------~~f   67 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDD---------------------------------SYF   67 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCT---------------------------------TCC
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCC---------------------------------Ccc
Confidence            37899999875 8999974  58999999999987654322210                                 223


Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE-EEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI-KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I-~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      +.++++++ +.||+++-.+++++++|++|+++ .++.-|.+.                                   |  
T Consensus        68 geGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~-----------------------------------g--  109 (266)
T 2iwa_A           68 GEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD-----------------------------------G--  109 (266)
T ss_dssp             EEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSSS-----------------------------------C--
T ss_pred             eEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCCC-----------------------------------e--
Confidence            45777876 79999999999999999999864 333322010                                   1  


Q ss_pred             cccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeeccccccCCceeeeeccceeeeccccc-CCcccceeeeee
Q 013362          159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSNFAILGLPYWFAFPLERVYAVAGGH-QGSWTDHIQRCS  236 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~-~g~~~~~i~~v~  236 (444)
                           .+++.+++.||++| ..++|..+|++|..+ .++.....   +.|..+  |-+..|..+..+ .-.....|..+|
T Consensus       110 -----~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~--~nele~~dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          110 -----WGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYN---GHRVIR--LNELEYINGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             -----CEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEET---TEECCC--EEEEEEETTEEEEEETTSSEEEEEE
T ss_pred             -----EEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCC---Cccccc--ceeEEEECCEEEEecCCCCeEEEEE
Confidence                 23455678999999 688999999999664 55543221   112111  111122222221 222245788999


Q ss_pred             cCCCeeeEEEe
Q 013362          237 LLPGRIDIKVN  247 (444)
Q Consensus       237 ~~pGri~i~v~  247 (444)
                      +.+|++.=++.
T Consensus       179 ~~tg~V~~~I~  189 (266)
T 2iwa_A          179 AKDGTLLGWIL  189 (266)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99998764433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.67  E-value=2.6e-07  Score=84.48  Aligned_cols=119  Identities=13%  Similarity=0.105  Sum_probs=82.4

Q ss_pred             CcceEEEe----cCCCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCC
Q 013362            2 RPAASFYH----KDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS   76 (444)
Q Consensus         2 ~P~GIa~D----~~g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~   76 (444)
                      .|.|++++    ++++.|||+|+.++.|+++|+. +|.+....    .       +  . . .             ....
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~----~-------~--~-~-~-------------~~~~  224 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK----V-------W--G-H-I-------------PGTH  224 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE----E-------E--E-E-C-------------CCCS
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccce----E-------E--E-E-C-------------CCCC
Confidence            58899999    8887899999999999999975 45432110    0       0  0 0 0             0000


Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcE-EEeecCCccceeecceehhhhhhhhhcCCccccccccccccccc
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI-KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLK  155 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I-~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~  155 (444)
                      +..|.+++++++|+|||++..+++|+++|+++|++ .++..+..                                    
T Consensus       225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~------------------------------------  268 (314)
T 1pjx_A          225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE------------------------------------  268 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS------------------------------------
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC------------------------------------
Confidence            25689999999999999999999999999987754 22221100                                    


Q ss_pred             CCCccccccccc--ccCCeEEEEeCCCCeEEEEeCCC
Q 013362          156 ELPYAGLISSSI--AFQNHILLCDIVGQRIMRLNRES  190 (444)
Q Consensus       156 Gip~a~~~Sgla--~~~~~LyIADT~nhRIRkvdl~t  190 (444)
                       .     +.+++  ..++.|||++..+++|.++++.+
T Consensus       269 -~-----~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          269 -K-----PSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             -C-----EEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             -C-----ceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence             0     11112  23445999999999999999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.58  E-value=1.2e-06  Score=81.42  Aligned_cols=121  Identities=7%  Similarity=0.131  Sum_probs=88.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++|. ||++|+.++.|+++|+.++.+..+...  .                                -..|.
T Consensus        46 ~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~~--~--------------------------------~~~~~   90 (333)
T 2dg1_A           46 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVS--H--------------------------------KANPA   90 (333)
T ss_dssp             CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC--S--------------------------------SSSEE
T ss_pred             cccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEeeC--C--------------------------------CCCcc
Confidence            478999998875 999999999999999988877654311  0                                23478


Q ss_pred             eeEEcCCCeEEEEeCCC----CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           82 HLMKSEDDNLLIINRSF----ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        82 gL~~d~dG~LYIADagn----h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      +++++++|.|||++.++    +.|+++|++++.+.++......     +                             ..
T Consensus        91 ~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~-----------------------------~~  136 (333)
T 2dg1_A           91 AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-----A-----------------------------YC  136 (333)
T ss_dssp             EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-----C-----------------------------CC
T ss_pred             eEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc-----C-----------------------------Cc
Confidence            99999999999999887    8999999998887755421100     0                             00


Q ss_pred             Cccccccccc-ccCCeEEEEeCC------CCeEEEEeCCCCeEEEe
Q 013362          158 PYAGLISSSI-AFQNHILLCDIV------GQRIMRLNRESGVCSNF  196 (444)
Q Consensus       158 p~a~~~Sgla-~~~~~LyIADT~------nhRIRkvdl~tG~vST~  196 (444)
                           +..++ ...+.||+++..      +.+|.+++.+++.+..+
T Consensus       137 -----~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A          137 -----IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  177 (333)
T ss_dssp             -----EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             -----ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence                 11111 235689999875      57899999988877765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.55  E-value=7.4e-06  Score=78.49  Aligned_cols=81  Identities=10%  Similarity=-0.028  Sum_probs=60.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.+++++++|+.||++|.+++.|+.+++. +|.+..+.... .                +   ..          -..|
T Consensus       146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~----------------~---~~----------g~~p  195 (365)
T 1jof_A          146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-A----------------P---DP----------GDHP  195 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-C----------------S---ST----------TCCE
T ss_pred             cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-c----------------C---CC----------CCCC
Confidence            588999999999999999999999999987 67654332100 0                0   00          2348


Q ss_pred             ceeEEcCCC-eEEEEeCCCCEEEEEE--CCCCcEE
Q 013362           81 WHLMKSEDD-NLLIINRSFETLWIMD--LASGEIK  112 (444)
Q Consensus        81 ~gL~~d~dG-~LYIADagnh~IrkID--l~tG~I~  112 (444)
                      ++++++++| .||+++..+++|..++  ..+|++.
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  230 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            899999987 6999998888877765  4477753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.54  E-value=1.7e-06  Score=80.87  Aligned_cols=136  Identities=12%  Similarity=0.133  Sum_probs=91.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|.+++++++|+.||+++..++.|+.+++. +|.+..+......            + .|+..  +        +....|
T Consensus        87 ~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------~-~~p~~--~--------~~~~~~  143 (347)
T 3hfq_A           87 PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS------------G-HGPRP--E--------QDGSHI  143 (347)
T ss_dssp             CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC------------C-CCSST--T--------CSSCCE
T ss_pred             CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC------------C-CCCCc--c--------ccCCCc
Confidence            689999999999999999999999999984 5555544321100            0 01110  1        126678


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECC-CCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLA-SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~-tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      ..++++++|.||+++.+.++|+.+|+. +|.+..+..-...                             .+..+.++. 
T Consensus       144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----------------------------~g~~p~~~~-  193 (347)
T 3hfq_A          144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-----------------------------AGFGPRHLV-  193 (347)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-----------------------------TTCCEEEEE-
T ss_pred             eEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-----------------------------CCCCCceEE-
Confidence            999999998899999999999999998 6776644310000                             000011111 


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCC--CCeEEEe
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRE--SGVCSNF  196 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~--tG~vST~  196 (444)
                            +..+++.||+++..+++|+.++++  +|....+
T Consensus       194 ------~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~  226 (347)
T 3hfq_A          194 ------FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL  226 (347)
T ss_dssp             ------ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             ------ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence                  123455799999999999988877  4776544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.53  E-value=3.2e-06  Score=77.87  Aligned_cols=122  Identities=10%  Similarity=0.088  Sum_probs=89.3

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++++.||+++. ++.|+.+|+.++.+......+..               |     .          -..|.
T Consensus       186 ~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~---------------~-----~----------~~~~~  234 (353)
T 3vgz_A          186 MSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDD---------------G-----K----------EHFFI  234 (353)
T ss_dssp             TCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCS---------------S-----S----------CCCEE
T ss_pred             ccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCC---------------C-----C----------Ccccc
Confidence            4889999999999999987 78999999998876644333211               0     1          34578


Q ss_pred             eeEEcCCC-eEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           82 HLMKSEDD-NLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        82 gL~~d~dG-~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      +++++++| .||+++...++|+.+|+.+|++...... +..                                 .++.  
T Consensus       235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~---------------------------------~~~~--  278 (353)
T 3vgz_A          235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-PES---------------------------------LAVL--  278 (353)
T ss_dssp             EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC-SSC---------------------------------CCEE--
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-CCC---------------------------------ceEE--
Confidence            89999876 4999999999999999999886543321 000                                 0111  


Q ss_pred             cccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                           +...++.||+++..+++|..+|+.++.+..
T Consensus       279 -----~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          279 -----FNPARNEAYVTHRQAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             -----EETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -----ECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence                 123456799999999999999999988654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.50  E-value=1.2e-05  Score=77.35  Aligned_cols=161  Identities=16%  Similarity=0.140  Sum_probs=105.1

Q ss_pred             ceEEEecCCCEEEEEeCC--CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            4 AASFYHKDDDCLYIVDSE--NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTe--NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|++|+.  +.||++-..  ++.||++|+.+|.|.--..-+.                                 -.++-
T Consensus        24 qGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---------------------------------~~fge   68 (243)
T 3mbr_X           24 EGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---------------------------------PYFGA   68 (243)
T ss_dssp             EEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---------------------------------TCCEE
T ss_pred             ccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---------------------------------Cccee
Confidence            6999974  589999554  6899999999997753222110                                 11234


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcE-EEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEI-KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I-~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      |+++++ +.||+++-.+++++++|++|+++ .++.-+..                                    |    
T Consensus        69 Gi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~------------------------------------G----  107 (243)
T 3mbr_X           69 GIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE------------------------------------G----  107 (243)
T ss_dssp             EEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSC------------------------------------C----
T ss_pred             EEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC------------------------------------c----
Confidence            667776 79999999999999999999864 34432110                                    1    


Q ss_pred             cccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeeccccccCCceeeeeccceeeecccccCCc-ccceeeeeecC
Q 013362          161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGS-WTDHIQRCSLL  238 (444)
Q Consensus       161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~-~~~~i~~v~~~  238 (444)
                         -+++..++.||++| .+.+|..+|++|..+ .+|.....   +.|..+-.=|+  |..|..+... ..+.|..+|+.
T Consensus       108 ---wglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~---g~~~~~lNeLe--~~~G~lyanvw~s~~I~vIDp~  178 (243)
T 3mbr_X          108 ---WALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAG---GRPLDNLNELE--WVNGELLANVWLTSRIARIDPA  178 (243)
T ss_dssp             ---CEEEECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEE--EETTEEEEEETTTTEEEEECTT
T ss_pred             ---eEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccC---CcccccceeeE--EeCCEEEEEECCCCeEEEEECC
Confidence               13455678999999 589999999998765 55543221   22222211122  3333222222 24689999999


Q ss_pred             CCeeeEEEeee
Q 013362          239 PGRIDIKVNVD  249 (444)
Q Consensus       239 pGri~i~v~v~  249 (444)
                      +|+|.=.+++.
T Consensus       179 tG~V~~~idl~  189 (243)
T 3mbr_X          179 SGKVVAWIDLQ  189 (243)
T ss_dssp             TCBEEEEEECG
T ss_pred             CCCEEEEEECC
Confidence            99987555443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.48  E-value=1.1e-06  Score=86.37  Aligned_cols=79  Identities=11%  Similarity=-0.012  Sum_probs=56.5

Q ss_pred             CcceEEEecC---CCEEEEEeCCC-----CeEEEEECCCCeEE---EeccCCCcCccCCcchhhhhcccCcccccCcccc
Q 013362            2 RPAASFYHKD---DDCLYIVDSEN-----HAIRRADMGRRVLE---TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSE   70 (444)
Q Consensus         2 ~P~GIa~D~~---g~~LYVADTeN-----HaIRkIDl~tg~Vt---TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~   70 (444)
                      .|.||+++++   ++.|||+++.+     ++|.++++..+.++   ++.-.  .                +.....    
T Consensus        76 ~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~--~----------------p~~~~~----  133 (352)
T 2ism_A           76 GLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDG--I----------------PARPHG----  133 (352)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEE--E----------------CCCTTC----
T ss_pred             CceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEe--C----------------CCCCCC----
Confidence            6999999998   66999999976     89999998655332   22110  0                000011    


Q ss_pred             CCCCCCCCCcceeEEcCCCeEEEEeC-------------CCCEEEEEECCC
Q 013362           71 KLDPQSLIFPWHLMKSEDDNLLIINR-------------SFETLWIMDLAS  108 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~dG~LYIADa-------------gnh~IrkIDl~t  108 (444)
                            ..+|.+|+++++|.|||++.             ...+|++||++.
T Consensus       134 ------~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          134 ------LHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             ------CCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             ------CcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence                  66788999999999999973             236999999863

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.47  E-value=2.9e-06  Score=78.10  Aligned_cols=129  Identities=12%  Similarity=0.141  Sum_probs=91.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeE----EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL----ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V----tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      .|.+++++++|+.||+++..++.|+.+|+.++.+    .++..                                    -
T Consensus       177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------------------------------------~  220 (331)
T 3u4y_A          177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT------------------------------------N  220 (331)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC------------------------------------S
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC------------------------------------C
Confidence            5889999999989999999999999999987653    22211                                    1


Q ss_pred             CCcceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362           78 IFPWHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE  156 (444)
Q Consensus        78 n~P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G  156 (444)
                      ..|.+++++++|. ||++..+.+.|+.+|+.+|+++.+.. ........+.               +       .....+
T Consensus       221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~---------------~-------~~~~~~  277 (331)
T 3u4y_A          221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS-FGHGLLIDPR---------------P-------LFGANQ  277 (331)
T ss_dssp             SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE-EECCCCCCCG---------------G-------GTTCCC
T ss_pred             CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc-cccccccCCC---------------C-------cccccc
Confidence            3467888998876 99999999999999999998866542 1100000000               0       000000


Q ss_pred             CCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362          157 LPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       157 ip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~  196 (444)
                      +       .+...+..||++...++.|..+++++..+..+
T Consensus       278 ~-------~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          278 M-------ALNKTETKLFISANISRELKVFTISGKVVGYV  310 (331)
T ss_dssp             E-------EECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             e-------EECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence            1       12345678999999999999999999888776

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.47  E-value=1.4e-05  Score=74.76  Aligned_cols=186  Identities=13%  Similarity=0.128  Sum_probs=106.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.+++++++|+ ||+++..++.|+.+++. +|.+..+.... .                    ..          -..|
T Consensus       142 ~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~--------------------~~----------g~~p  189 (347)
T 3hfq_A          142 HIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLT-M--------------------EA----------GFGP  189 (347)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEE-C--------------------CT----------TCCE
T ss_pred             CceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEE-c--------------------CC----------CCCC
Confidence            477899999998 99999999999999987 56554432110 0                    00          2347


Q ss_pred             ceeEEcCCCe-EEEEeCCCCEEEEEECC--CCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           81 WHLMKSEDDN-LLIINRSFETLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        81 ~gL~~d~dG~-LYIADagnh~IrkIDl~--tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      .+++++++|. ||+++...++|+.++++  +|+++.+.. ....                  +..+              
T Consensus       190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-~~~~------------------~~~~--------------  236 (347)
T 3hfq_A          190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-VKTI------------------PADY--------------  236 (347)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EESS------------------CTTC--------------
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-eeec------------------CCCC--------------
Confidence            8899999987 99999999998888766  576654331 0000                  0000              


Q ss_pred             Cccccccc--ccccCCeEEEEeCCCCeEEEEeCC-CCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccceee
Q 013362          158 PYAGLISS--SIAFQNHILLCDIVGQRIMRLNRE-SGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQ  233 (444)
Q Consensus       158 p~a~~~Sg--la~~~~~LyIADT~nhRIRkvdl~-tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~i~  233 (444)
                      +....+.+  +..++..||+++..+++|..++++ +|....++....+ -..|..+.+ |-+...    +.++.....+.
T Consensus       237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spdg~~l----~v~~~~~~~v~  311 (347)
T 3hfq_A          237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPTEAFV----VVVNQNTDNAT  311 (347)
T ss_dssp             CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTTSSEE----EEEETTTTEEE
T ss_pred             CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCCCCEE----EEEEcCCCcEE
Confidence            00001112  123456799999999999999986 4444444311110 123444443 433211    11222223444


Q ss_pred             ee--ecCCCeee-EEEeeeCCCCcccc
Q 013362          234 RC--SLLPGRID-IKVNVDIPSDTELV  257 (444)
Q Consensus       234 ~v--~~~pGri~-i~v~v~~P~~~el~  257 (444)
                      -+  +...|++. +.-.+.+|..+.+.
T Consensus       312 v~~~d~~tg~l~~~~~~~~~p~p~~~~  338 (347)
T 3hfq_A          312 LYARDLTSGKLSLLQKDVTVPEGVCVR  338 (347)
T ss_dssp             EEEECTTTCCEEEEEEEEECTTEEEEE
T ss_pred             EEEEeCCCCeEEecccceecCCCcEEE
Confidence            44  66677765 22335666555443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.46  E-value=3.6e-06  Score=82.40  Aligned_cols=159  Identities=11%  Similarity=0.068  Sum_probs=105.1

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      +||.++  ++.||++...+..||++|+.+|.|.--. .+.                                 =.+.-|+
T Consensus        58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~---------------------------------~~FgeGi  101 (268)
T 3nok_A           58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG---------------------------------NIFAEGL  101 (268)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT---------------------------------TCCEEEE
T ss_pred             ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---------------------------------CcceeEE
Confidence            799996  4689999999999999999988652211 110                                 1123467


Q ss_pred             EEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccc
Q 013362           84 MKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGL  162 (444)
Q Consensus        84 ~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~  162 (444)
                      ++++ +.||+++-.+++++++|++|+++. ++.-+ +                                   .|      
T Consensus       102 t~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~-----------------------------------eG------  138 (268)
T 3nok_A          102 ASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-G-----------------------------------EG------  138 (268)
T ss_dssp             EECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS-S-----------------------------------CC------
T ss_pred             EEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC-C-----------------------------------ce------
Confidence            7776 799999999999999999998653 33311 0                                   01      


Q ss_pred             cccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeeccccccCCceeeeeccceeeecccccCCcc-cceeeeeecCCC
Q 013362          163 ISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSW-TDHIQRCSLLPG  240 (444)
Q Consensus       163 ~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~-~~~i~~v~~~pG  240 (444)
                       .+++.+++.||++| ...+|..+|++|..+ .+|.....   +.|..+  +-|..|..|..+...+ ...|..+|+.+|
T Consensus       139 -wGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~---g~~v~~--lNeLe~~dG~lyanvw~s~~I~vIDp~TG  211 (268)
T 3nok_A          139 -WGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLR---GQPVEL--INELECANGVIYANIWHSSDVLEIDPATG  211 (268)
T ss_dssp             -CCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEET---TEECCC--EEEEEEETTEEEEEETTCSEEEEECTTTC
T ss_pred             -eEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCC---Cccccc--ccccEEeCCEEEEEECCCCeEEEEeCCCC
Confidence             23456688999999 599999999999765 45543221   112111  1112233333333332 468999999999


Q ss_pred             eeeEEEee
Q 013362          241 RIDIKVNV  248 (444)
Q Consensus       241 ri~i~v~v  248 (444)
                      +|.=++++
T Consensus       212 ~V~~~Idl  219 (268)
T 3nok_A          212 TVVGVIDA  219 (268)
T ss_dssp             BEEEEEEC
T ss_pred             cEEEEEEC
Confidence            98755554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.46  E-value=5e-06  Score=76.53  Aligned_cols=124  Identities=13%  Similarity=0.111  Sum_probs=86.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCe-EEEEECCC-CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHA-IRRADMGR-RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHa-IRkIDl~t-g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|.+++++++|+.||+++..++. |+..++.. |.+......  .                   ...          -..
T Consensus       129 ~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~--~-------------------~~~----------~~~  177 (331)
T 3u4y_A          129 DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE--F-------------------ISG----------GTR  177 (331)
T ss_dssp             TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE--E-------------------ECS----------SSS
T ss_pred             CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc--c-------------------ccC----------CCC
Confidence            58899999999889999999888 88888653 222111100  0                   000          234


Q ss_pred             cceeEEcCCCe-EEEEeCCCCEEEEEECCCCcE----EEeecCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362           80 PWHLMKSEDDN-LLIINRSFETLWIMDLASGEI----KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL  154 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I----~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~  154 (444)
                      |.+++++++|. ||+++..+++|+.+|+.+|++    .++..+ .                                 .+
T Consensus       178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~---------------------------------~~  223 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-N---------------------------------LP  223 (331)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-S---------------------------------CC
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-C---------------------------------CC
Confidence            78999999886 999999999999999998874    333221 0                                 00


Q ss_pred             cCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362          155 KELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       155 ~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~  197 (444)
                      .++.       +...+..||++....+.|..+|+++|.+..++
T Consensus       224 ~~~~-------~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~  259 (331)
T 3u4y_A          224 GTIV-------VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK  259 (331)
T ss_dssp             CCEE-------ECTTSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred             ceEE-------ECCCCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence            0111       12345679999998899999999999987764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.42  E-value=6.6e-06  Score=82.83  Aligned_cols=215  Identities=13%  Similarity=0.082  Sum_probs=129.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      -|.|++||+..+.|||.|-.++.|-++|+..+.+..+.=.+..             ..|.    .          ...|.
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s-------------~~g~----~----------~~~~s   66 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS-------------SNGD----G----------EQQMS   66 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC-------------CSSC----C----------SEEEE
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc-------------ccCC----C----------cceee
Confidence            5899999998889999999999999999986765544110000             0011    1          55678


Q ss_pred             eeEE---cCCCeEEE-EeC------------CCCEEEEEECC---CCcEEEeecCCccceeecceehhhhhhhhhcCCcc
Q 013362           82 HLMK---SEDDNLLI-INR------------SFETLWIMDLA---SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQD  142 (444)
Q Consensus        82 gL~~---d~dG~LYI-ADa------------gnh~IrkIDl~---tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~  142 (444)
                      ||.+   |++|.||| +|+            +.+.+.++|+.   ||+....+. .....+.+     .+.         
T Consensus        67 Gl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~d-L~~~~~~~-----~~~---------  131 (334)
T 2p9w_A           67 GLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVN-FEKVQDEF-----EKK---------  131 (334)
T ss_dssp             EEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEE-SHHHHHHH-----HHH---------
T ss_pred             EEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEec-Cccccccc-----ccc---------
Confidence            9999   67799999 663            57999999999   887665553 11110000     000         


Q ss_pred             cccccccccccccCCCccccccccc-ccCCeEEEEeCCC-CeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeec
Q 013362          143 WLLHQIDSSCSLKELPYAGLISSSI-AFQNHILLCDIVG-QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAV  220 (444)
Q Consensus       143 ~~~~~~~~~~~~~Gip~a~~~Sgla-~~~~~LyIADT~n-hRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~  220 (444)
                             .     |..+. .+..++ +.++++||+|+.. ..|.||++++..++.+..+.    ..+.....|-+++|..
T Consensus       132 -------~-----g~~~~-~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~----~~~~~~~G~nGIv~~p  194 (334)
T 2p9w_A          132 -------A-----GKRPF-GVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES----GNGGQRPGYSGITFDP  194 (334)
T ss_dssp             -------H-----SSCCE-EEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC----CCSSSCCSCSEEEEET
T ss_pred             -------c-----ccccc-CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC----CCcccccCcceEEEeC
Confidence                   0     10110 012222 4578999999999 99999999988777663221    0111223355777763


Q ss_pred             -cc-c-cCCcccceeeeeecCCCeee--EEEe-------eeCCCCcccccccccceeeeeeccceeeeec
Q 013362          221 -AG-G-HQGSWTDHIQRCSLLPGRID--IKVN-------VDIPSDTELVESLQEGCIWRQARGTASVVLR  278 (444)
Q Consensus       221 -~~-~-~~g~~~~~i~~v~~~pGri~--i~v~-------v~~P~~~el~~p~~e~ciwrq~rg~~~~~~~  278 (444)
                       |+ + ..++ .++|-+|++. -.+.  |.+.       ...|.++ |.....-.|+-=.....++.+..
T Consensus       195 dg~~Liv~~~-~g~L~~fD~~-~pv~~~v~~~~~G~~~~~~~~dgi-lp~~~~G~vllV~~~~~~~~~l~  261 (334)
T 2p9w_A          195 HSNKLIAFGG-PRALTAFDVS-KPYAWPEPVKINGDFGTLSGTEKI-VTVPVGNESVLVGARAPYAISFR  261 (334)
T ss_dssp             TTTEEEEESS-SSSEEEEECS-SSSCCCEECEESSCCCCCTTEEEE-EEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEcC-CCeEEEEcCC-CCcceeecccccCCcccccCcccc-cccccCCEEEEEEcCCCCEEEEE
Confidence             32 2 3666 8999999876 3444  4443       2344454 44444555544444444443333

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.41  E-value=5e-06  Score=78.36  Aligned_cols=128  Identities=12%  Similarity=0.135  Sum_probs=89.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++|+.||+++..++.|+.+++.+|.+..+......                +   ..          ...|.
T Consensus       212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~----------------~---~~----------~~~~~  262 (361)
T 3scy_A          212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD----------------T---VN----------AQGSG  262 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC----------------S---SC----------CCCEE
T ss_pred             CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC----------------C---CC----------CCCcc
Confidence            5789999999999999999999999999888876554321100                0   01          55678


Q ss_pred             eeEEcCCCe-EEEEeCC-CCEEEEEEC--CCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           82 HLMKSEDDN-LLIINRS-FETLWIMDL--ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        82 gL~~d~dG~-LYIADag-nh~IrkIDl--~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      +++++++|. ||+++.+ .++|+.+++  .+|.++.+.. .+.     |                         ..+.++
T Consensus       263 ~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~-~~~-----g-------------------------~~~~~~  311 (361)
T 3scy_A          263 DIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY-QLT-----G-------------------------IHPRNF  311 (361)
T ss_dssp             EEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE-EEC-----S-------------------------SCCCEE
T ss_pred             cEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE-ecC-----C-------------------------CCCceE
Confidence            999999875 9999999 888888776  4777654432 000     0                         000011


Q ss_pred             CcccccccccccCCeEEEEeCCCCeEEE--EeCCCCeEEEe
Q 013362          158 PYAGLISSSIAFQNHILLCDIVGQRIMR--LNRESGVCSNF  196 (444)
Q Consensus       158 p~a~~~Sgla~~~~~LyIADT~nhRIRk--vdl~tG~vST~  196 (444)
                      .       +...++.||+++..+++|..  +|+++|.+..+
T Consensus       312 ~-------~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          312 I-------ITPNGKYLLVACRDTNVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             E-------ECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred             E-------ECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence            1       12346679999988888877  78889988765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.41  E-value=1e-05  Score=77.89  Aligned_cols=159  Identities=13%  Similarity=0.014  Sum_probs=106.5

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      .|+++  .++.||+++-.++.+.++|+.+..+ .|+.-.                                    ..+|+
T Consensus        68 eGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~------------------------------------~~Gwg  109 (243)
T 3mbr_X           68 AGIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYP------------------------------------GEGWA  109 (243)
T ss_dssp             EEEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECS------------------------------------SCCCE
T ss_pred             eEEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC------------------------------------CCceE
Confidence            46666  5678999999999999999988754 333211                                    13688


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      |+.++ +.||++| +.++|+.+|+.|.++. ++.=+.      .                              |.|.. 
T Consensus       110 lt~dg-~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~------~------------------------------g~~~~-  150 (243)
T 3mbr_X          110 LTSDD-SHLYMSD-GTAVIRKLDPDTLQQVGSIKVTA------G------------------------------GRPLD-  150 (243)
T ss_dssp             EEECS-SCEEEEC-SSSEEEEECTTTCCEEEEEECEE------T------------------------------TEECC-
T ss_pred             EeeCC-CEEEEEC-CCCeEEEEeCCCCeEEEEEEEcc------C------------------------------Ccccc-
Confidence            88776 7999999 6899999999998654 332110      0                              11110 


Q ss_pred             ccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeeccccc-cCC--ceeeeeccceeeecc---cccCCcccceeee
Q 013362          162 LISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSNFAI-LGL--PYWFAFPLERVYAVA---GGHQGSWTDHIQR  234 (444)
Q Consensus       162 ~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg~g~-lg~--P~~l~~PL~~v~~~~---~~~~g~~~~~i~~  234 (444)
                      .+..|...++.||+..-....|.+||++||.+ .+|.++++-. ...  +.....|=+++|+..   .++.|.+=.++=+
T Consensus       151 ~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~  230 (243)
T 3mbr_X          151 NLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE  230 (243)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             cceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence            01223345788999998899999999999998 5566665421 111  223456667788754   3458887777777


Q ss_pred             eecCC
Q 013362          235 CSLLP  239 (444)
Q Consensus       235 v~~~p  239 (444)
                      |.+.|
T Consensus       231 v~~~~  235 (243)
T 3mbr_X          231 IRLTP  235 (243)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            76543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.39  E-value=1.9e-05  Score=74.43  Aligned_cols=174  Identities=14%  Similarity=0.083  Sum_probs=101.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCe-------EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRV-------LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDP   74 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-------VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~   74 (444)
                      +|++++++++|+.||+++.+++.|+.+++....       +... |....                 ...          
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~-~~~~~-----------------~~~----------  207 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK-GTPEA-----------------FKV----------  207 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE-EEEEE-----------------EEC----------
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec-ccccc-----------------eec----------
Confidence            458899999999999999999999999865321       2111 00000                 000          


Q ss_pred             CCCCCcceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccccccc
Q 013362           75 QSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS  153 (444)
Q Consensus        75 ~~Ln~P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~  153 (444)
                      ..-..|.+++++++|. ||+++...++|+.+|+.+|.++.+..- ...                  +.        ....
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~-~~~------------------~~--------~~~~  260 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV-AAD------------------TV--------NAQG  260 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE-ESC------------------SS--------CCCC
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE-ecC------------------CC--------CCCC
Confidence            0034588999999875 999999999999999988877654420 000                  00        0000


Q ss_pred             ccCCCcccccccccccCCeEEEEeCC-CCeEEEEeC--CCCeEEEeeeccccccCCceeeee-ccceeeecccccCCccc
Q 013362          154 LKELPYAGLISSSIAFQNHILLCDIV-GQRIMRLNR--ESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWT  229 (444)
Q Consensus       154 ~~Gip~a~~~Sgla~~~~~LyIADT~-nhRIRkvdl--~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~  229 (444)
                      +.++.       +..++..||+++.. .++|+.+++  .+|....++....|  ..|..+.+ |-+...-.    ++...
T Consensus       261 ~~~i~-------~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g--~~~~~~~~spdg~~l~~----~~~~~  327 (361)
T 3scy_A          261 SGDIH-------LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG--IHPRNFIITPNGKYLLV----ACRDT  327 (361)
T ss_dssp             EEEEE-------ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS--SCCCEEEECTTSCEEEE----EETTT
T ss_pred             cccEE-------ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC--CCCceEEECCCCCEEEE----EECCC
Confidence            00111       12356679999998 888888776  47776655422212  34444443 43331111    22222


Q ss_pred             ceeee--eecCCCeee
Q 013362          230 DHIQR--CSLLPGRID  243 (444)
Q Consensus       230 ~~i~~--v~~~pGri~  243 (444)
                      ..|.-  ++...|++.
T Consensus       328 ~~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          328 NVIQIFERDQATGLLT  343 (361)
T ss_dssp             TEEEEEEECTTTCCEE
T ss_pred             CCEEEEEEECCCCcEe
Confidence            33433  566777665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.31  E-value=2.3e-05  Score=76.45  Aligned_cols=160  Identities=12%  Similarity=0.051  Sum_probs=102.8

Q ss_pred             ceEEEecCCCEEEEEeCC--CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            4 AASFYHKDDDCLYIVDSE--NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTe--NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +||.|+ + +.||++...  ++.||++|+.+|.|.--..-+.                                 =.+.-
T Consensus        46 qGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---------------------------------~~Fge   90 (262)
T 3nol_A           46 EGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---------------------------------RYFGE   90 (262)
T ss_dssp             EEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---------------------------------TCCEE
T ss_pred             ceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCC---------------------------------cccee
Confidence            899997 4 489999865  5699999999997643221110                                 11334


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      ||++++ +.||+++-.+++++++|++|+++. ++.-+.                                    .|    
T Consensus        91 Git~~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~------------------------------------eG----  129 (262)
T 3nol_A           91 GISDWK-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG------------------------------------EG----  129 (262)
T ss_dssp             EEEEET-TEEEEEESSSSEEEEEETTTCCEEEEEECSS------------------------------------CC----
T ss_pred             EEEEeC-CEEEEEEeeCCEEEEEECccCcEEEEEECCC------------------------------------Cc----
Confidence            677776 799999999999999999998643 343210                                    01    


Q ss_pred             cccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeeccccccCCceeeeeccceeeecccccCCc-ccceeeeeecC
Q 013362          161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGS-WTDHIQRCSLL  238 (444)
Q Consensus       161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~-~~~~i~~v~~~  238 (444)
                         -+++.+++.||++| +..+|..+|++|..+ .+|.....   |.|...-.-|+  |..|..+... ....|.++|+.
T Consensus       130 ---~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~---g~~~~~lNELe--~~~G~lyan~w~~~~I~vIDp~  200 (262)
T 3nol_A          130 ---WGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAH---GEELPELNELE--WVDGEIFANVWQTNKIVRIDPE  200 (262)
T ss_dssp             ---CCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEET---TEECCCEEEEE--EETTEEEEEETTSSEEEEECTT
T ss_pred             ---eEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccC---CccccccceeE--EECCEEEEEEccCCeEEEEECC
Confidence               13455678899999 588999999998655 55543221   12211100122  2223222222 24689999999


Q ss_pred             CCeeeEEEee
Q 013362          239 PGRIDIKVNV  248 (444)
Q Consensus       239 pGri~i~v~v  248 (444)
                      +|+|.=.+.+
T Consensus       201 tG~V~~~Id~  210 (262)
T 3nol_A          201 TGKVTGIIDL  210 (262)
T ss_dssp             TCBEEEEEEC
T ss_pred             CCcEEEEEEC
Confidence            9998755443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.29  E-value=1.5e-05  Score=77.26  Aligned_cols=160  Identities=10%  Similarity=-0.032  Sum_probs=106.4

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +.|++++  ++.||+++-.++.|-.+|..++.+ .++. .| .                                 ..+|
T Consensus        68 geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~-~g-~---------------------------------~~g~  110 (266)
T 2iwa_A           68 GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT-HQ-M---------------------------------KDGW  110 (266)
T ss_dssp             EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE-CC-S---------------------------------SSCC
T ss_pred             eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE-CC-C---------------------------------CCeE
Confidence            4577775  568999999999999999988754 3432 11 1                                 1257


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCC-ccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGF-SKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~-~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|+.++ +.||++| +.++|+.||++|.++. ++.=|. +++.                                 ..  
T Consensus       111 glt~Dg-~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~---------------------------------~~--  153 (266)
T 2iwa_A          111 GLATDG-KILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRV---------------------------------IR--  153 (266)
T ss_dssp             EEEECS-SSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEEC---------------------------------CC--
T ss_pred             EEEECC-CEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCccc---------------------------------cc--
Confidence            777776 7899999 7899999999997653 333111 1110                                 00  


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeeccccc----cCCceeeeeccceeeecc---cccCCcccce
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSNFAI----LGLPYWFAFPLERVYAVA---GGHQGSWTDH  231 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg~g~----lg~P~~l~~PL~~v~~~~---~~~~g~~~~~  231 (444)
                         +..+...++.||++.-..+.|.+||++||.+ .+|.+++...    -+.| ....|-+++|+..   .++.+....+
T Consensus       154 ---~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~-~~~v~nGIa~~~~~~~lfVTgk~~~~  229 (266)
T 2iwa_A          154 ---LNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFR-DIDVLNGIAWDQENKRIFVTGKLWPK  229 (266)
T ss_dssp             ---EEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT-TCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             ---ceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccc-ccCceEEEEEcCCCCEEEEECCCCCe
Confidence               1222223678999998899999999999976 6666654311    1111 1245566677654   3458888888


Q ss_pred             eeeeecCCC
Q 013362          232 IQRCSLLPG  240 (444)
Q Consensus       232 i~~v~~~pG  240 (444)
                      +-.|++.+.
T Consensus       230 v~~i~l~~~  238 (266)
T 2iwa_A          230 LFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            888877554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.28  E-value=5.8e-06  Score=81.13  Aligned_cols=97  Identities=13%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      ++|.|+++|++++.||++|.+++.++.  ...-.|..+...+..        ||-. ..|.........+.+.-.....|
T Consensus       202 rnp~g~a~d~~~g~l~v~d~g~~~~~~--~~~dei~~i~~G~ny--------Gwp~-~~g~~~~~~~~~p~~~~~~~~ap  270 (352)
T 2ism_A          202 RNPQGLAWHPKTGELFSSEHGPSGEQG--YGHDEVNLIVPGGNY--------GWPR-VVGRGNDPRYRDPLYFWPQGFPP  270 (352)
T ss_dssp             SEECCCEECTTTCCEEEEEECC--------CCCEEEEECTTCBC--------CTTT-CCSCCCCTTSCCCSEECTTCCCE
T ss_pred             CCcccEEEECCCCCEEEEEcCCCCCCC--CCCeEEEEeccCCcC--------CCCc-ccCCCCCCCCcCCeEecCCCCCC
Confidence            469999999955579999999998764  223345555322211        3321 11110000001111111224579


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCC
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASG  109 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG  109 (444)
                      .++++.. |.|||++..+++|++++++++
T Consensus       271 ~G~~~~~-G~l~v~~~~~~~v~~v~~~~~  298 (352)
T 2ism_A          271 GNLAFFR-GDLYVAGLRGQALLRLVLEGE  298 (352)
T ss_dssp             EEEEEET-TEEEEEETTTTEEEEEEEEEE
T ss_pred             cceEEEC-CEEEEEECCCCEEEEEEECCC
Confidence            9999965 999999999999999998643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.28  E-value=2e-05  Score=76.87  Aligned_cols=157  Identities=12%  Similarity=0.015  Sum_probs=103.9

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      .|+++  .++.||+++-.++.+-++|+.++.+ .++.=.                                    .++|+
T Consensus        90 eGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~------------------------------------~eG~g  131 (262)
T 3nol_A           90 EGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD------------------------------------GEGWG  131 (262)
T ss_dssp             EEEEE--ETTEEEEEESSSSEEEEEETTTCCEEEEEECS------------------------------------SCCCC
T ss_pred             eEEEE--eCCEEEEEEeeCCEEEEEECccCcEEEEEECC------------------------------------CCceE
Confidence            45677  4678999999999999999987654 333211                                    13578


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      ++.++ +.||++| +.++|+.+|+.|.++. ++.-+.      .|.                              |+ .
T Consensus       132 lt~dg-~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~------~g~------------------------------~~-~  172 (262)
T 3nol_A          132 LTHND-QYLIMSD-GTPVLRFLDPESLTPVRTITVTA------HGE------------------------------EL-P  172 (262)
T ss_dssp             EEECS-SCEEECC-SSSEEEEECTTTCSEEEEEECEE------TTE------------------------------EC-C
T ss_pred             EecCC-CEEEEEC-CCCeEEEEcCCCCeEEEEEEecc------CCc------------------------------cc-c
Confidence            88776 7999999 5899999999997654 332110      010                              10 0


Q ss_pred             ccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeeccccc-cC-Cceeeeeccceeeecc---cccCCcccceeeee
Q 013362          162 LISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSNFAI-LG-LPYWFAFPLERVYAVA---GGHQGSWTDHIQRC  235 (444)
Q Consensus       162 ~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg~g~-lg-~P~~l~~PL~~v~~~~---~~~~g~~~~~i~~v  235 (444)
                      .++.+...++.||+..-....|.+||++||.+ .+|.++++-. .. .+-....|=+++|+..   .++.|.+=-++=+|
T Consensus       173 ~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev  252 (262)
T 3nol_A          173 ELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI  252 (262)
T ss_dssp             CEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             ccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence            01222334678999999999999999999998 5566666421 11 1223455667777654   34577777777666


Q ss_pred             ec
Q 013362          236 SL  237 (444)
Q Consensus       236 ~~  237 (444)
                      .+
T Consensus       253 ~~  254 (262)
T 3nol_A          253 TL  254 (262)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.26  E-value=1.8e-05  Score=77.46  Aligned_cols=156  Identities=12%  Similarity=-0.026  Sum_probs=103.0

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEE-EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~Vt-TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      .|+++  .++.||+++-.++.+.++|..++.+. ++.-.                                    ..+|+
T Consensus        99 eGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~------------------------------------~eGwG  140 (268)
T 3nok_A           99 EGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTTRYS------------------------------------GEGWG  140 (268)
T ss_dssp             EEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEEECS------------------------------------SCCCC
T ss_pred             eEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEEeCC------------------------------------CceeE
Confidence            45777  56789999999999999999887543 33211                                    13578


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEEE-eecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIKE-AVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~T-iagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      |+.++ +.||++| +.++|+.+|++|.++.. +.=+.      .|                              .|. .
T Consensus       141 Lt~Dg-~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~------~g------------------------------~~v-~  181 (268)
T 3nok_A          141 LCYWN-GKLVRSD-GGTMLTFHEPDGFALVGAVQVKL------RG------------------------------QPV-E  181 (268)
T ss_dssp             EEEET-TEEEEEC-SSSEEEEECTTTCCEEEEEECEE------TT------------------------------EEC-C
T ss_pred             EecCC-CEEEEEC-CCCEEEEEcCCCCeEEEEEEeCC------CC------------------------------ccc-c
Confidence            88877 7999999 69999999999987642 32110      00                              010 0


Q ss_pred             ccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeeccccc-cC--Cceeeeeccceeeecc---cccCCcccceeee
Q 013362          162 LISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSNFAI-LG--LPYWFAFPLERVYAVA---GGHQGSWTDHIQR  234 (444)
Q Consensus       162 ~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg~g~-lg--~P~~l~~PL~~v~~~~---~~~~g~~~~~i~~  234 (444)
                      .+..|...++.||+..-....|.+||++||.+ .+|.++++-. ..  .+.....|=+++|+..   .++.|.+=-++-+
T Consensus       182 ~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~e  261 (268)
T 3nok_A          182 LINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFE  261 (268)
T ss_dssp             CEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEE
T ss_pred             cccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEE
Confidence            01223344779999998999999999999987 6666665321 11  1122345666777654   3357766666655


Q ss_pred             ee
Q 013362          235 CS  236 (444)
Q Consensus       235 v~  236 (444)
                      |.
T Consensus       262 v~  263 (268)
T 3nok_A          262 VR  263 (268)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.26  E-value=5.6e-06  Score=83.36  Aligned_cols=132  Identities=5%  Similarity=-0.005  Sum_probs=84.8

Q ss_pred             CcceEEE---ecCCCEEEE-EeC------------CCCeEEEEECC---CCeEEEeccCCCcCccCCcchhhhhcccCcc
Q 013362            2 RPAASFY---HKDDDCLYI-VDS------------ENHAIRRADMG---RRVLETVYPTSGISKKNNSLWAWIMEKLGFE   62 (444)
Q Consensus         2 ~P~GIa~---D~~g~~LYV-ADT------------eNHaIRkIDl~---tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a   62 (444)
                      +|+||.+   |+.+ .|+| +|+            +.+.|.++|+.   ++.+...+.-...  ..    +|. ...|  
T Consensus        64 ~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~--~~----~~~-~~~g--  133 (334)
T 2p9w_A           64 QMSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKV--QD----EFE-KKAG--  133 (334)
T ss_dssp             EEEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHH--HH----HHH-HHHS--
T ss_pred             eeeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccc--cc----ccc-cccc--
Confidence            5899999   7885 7887 673            57999999998   6655554432100  00    000 0000  


Q ss_pred             cccCccccCCCCCCCCCcceeEEcCCCeEEEEeCCC-CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCc
Q 013362           63 RDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQ  141 (444)
Q Consensus        63 ~~a~~~~~~~~~~~Ln~P~gL~~d~dG~LYIADagn-h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~  141 (444)
                                  +.+..|.++++|.+|+.||+|+.. ..|+|++++...+..+..-.+..                    
T Consensus       134 ------------~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~--------------------  181 (334)
T 2p9w_A          134 ------------KRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNG--------------------  181 (334)
T ss_dssp             ------------SCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCS--------------------
T ss_pred             ------------ccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCc--------------------
Confidence                        014568899999999999999999 99999999744455443211100                    


Q ss_pred             ccccccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCC
Q 013362          142 DWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRES  190 (444)
Q Consensus       142 ~~~~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t  190 (444)
                             ....++.|+++       ...++.|+++++ ++++.++|+++
T Consensus       182 -------~~~~G~nGIv~-------~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          182 -------GQRPGYSGITF-------DPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             -------SSCCSCSEEEE-------ETTTTEEEEESS-SSSEEEEECSS
T ss_pred             -------ccccCcceEEE-------eCCCCEEEEEcC-CCeEEEEcCCC
Confidence                   01122223332       124668999999 99999999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.25  E-value=0.00013  Score=68.68  Aligned_cols=120  Identities=16%  Similarity=0.196  Sum_probs=86.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.++++++++..||++...++.|+.+|+.++.+......+                                   ..|.
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-----------------------------------~~v~   77 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-----------------------------------SSPQ   77 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----------------------------------SSEE
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-----------------------------------CCcc
Confidence            47889999999899999999999999999887654322111                                   1356


Q ss_pred             eeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           82 HLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        82 gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      +++++++|. ||++....+.|+.+|+.++++.........+.                                 ++.  
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~---------------------------------~~~--  122 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL---------------------------------GLA--  122 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE---------------------------------EEE--
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc---------------------------------eEE--
Confidence            788888765 88999999999999999987654442111110                                 000  


Q ss_pred             cccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362          161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~  196 (444)
                           +...++.||++....+.|+.+|+.++.+...
T Consensus       123 -----~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A          123 -----LSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             -----ECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             -----ECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence                 1223557889999999999999999876543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.25  E-value=5.6e-05  Score=71.21  Aligned_cols=119  Identities=12%  Similarity=0.128  Sum_probs=85.5

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++++.||++...++.|+.+|+.++.+......                                   -..|.
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-----------------------------------~~~~~  119 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----------------------------------GKSPL  119 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------------------------------SSSEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-----------------------------------CCCcc
Confidence            4788999999999999999999999999988765433221                                   11256


Q ss_pred             eeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           82 HLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        82 gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      +++++++|. ||++....++|+.+|+.++++.........+.                                 .+.  
T Consensus       120 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---------------------------------~~~--  164 (391)
T 1l0q_A          120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK---------------------------------GIA--  164 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE---------------------------------EEE--
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcc---------------------------------eEE--
Confidence            788888765 88999999999999999987654442211110                                 000  


Q ss_pred             cccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                           +...++.||++....++|+.+|+.++.+..
T Consensus       165 -----~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          165 -----VTPDGTKVYVANFDSMSISVIDTVTNSVID  194 (391)
T ss_dssp             -----ECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -----ECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence                 112355788888888899999998887644

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.23  E-value=8.8e-05  Score=67.56  Aligned_cols=125  Identities=9%  Similarity=-0.004  Sum_probs=83.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC--CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|.+++++++++.||+++..++.|+..++.  ++....+....                       .          -..
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----------------------~----------~~~   85 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-----------------------L----------PGS   85 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-----------------------C----------SSC
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc-----------------------c----------CCC
Confidence            588999999999999999988999997765  55544332110                       0          114


Q ss_pred             cceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           80 PWHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      |.+++++++|. ||+++...+.|+.+|+.+|...........                              .....++.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------------------~~~~~~~~  135 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG------------------------------LDGCHSAN  135 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC------------------------------CTTBCCCE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC------------------------------CCCceEEE
Confidence            77899998876 999999899999999854432222110000                              00000111


Q ss_pred             cccccccccccCCeEEEEeCCCCeEEEEeCCC-CeEEEe
Q 013362          159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRES-GVCSNF  196 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t-G~vST~  196 (444)
                             +...++.||+++...++|+.+++.+ |.+..+
T Consensus       136 -------~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  167 (343)
T 1ri6_A          136 -------ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ  167 (343)
T ss_dssp             -------ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             -------ECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence                   1234567999998889999999988 776543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.23  E-value=1.4e-05  Score=78.91  Aligned_cols=75  Identities=5%  Similarity=-0.149  Sum_probs=57.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.+|+++++| .|||+|.. ++|++++ .+|. ++++.....                   ...          +..|.
T Consensus        30 ~P~~ia~~pdG-~l~V~e~~-g~I~~~d-~~G~-~~~~~~~v~-------------------~~g----------~~g~~   76 (354)
T 3a9g_A           30 VPWSIAPLGGG-RYLVTERP-GRLVLIS-PSGK-KLVASFDVA-------------------NVG----------EAGLL   76 (354)
T ss_dssp             CEEEEEEEETT-EEEEEETT-TEEEEEC-SSCE-EEEEECCCC-------------------CST----------TCSEE
T ss_pred             CCeEEEEcCCC-eEEEEeCC-CEEEEEe-CCCc-eEeecccee-------------------ecC----------CCcee
Confidence            69999999988 69999997 9999998 5776 666543200                   001          56688


Q ss_pred             eeEEcCC----CeEEEEeCC---C----CEEEEEECCCC
Q 013362           82 HLMKSED----DNLLIINRS---F----ETLWIMDLASG  109 (444)
Q Consensus        82 gL~~d~d----G~LYIADag---n----h~IrkIDl~tG  109 (444)
                      +|+++++    +.|||+++.   +    ++|+++++..+
T Consensus        77 gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~  115 (354)
T 3a9g_A           77 GLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS  115 (354)
T ss_dssp             EEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS
T ss_pred             eEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC
Confidence            9999985    899999975   4    79999998754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.22  E-value=2.1e-05  Score=77.55  Aligned_cols=77  Identities=13%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             CcceEEEecC---CCEEEEEeCC---C----CeEEEEECCCC--e---EEEeccCCCcCccCCcchhhhhcccCcccccC
Q 013362            2 RPAASFYHKD---DDCLYIVDSE---N----HAIRRADMGRR--V---LETVYPTSGISKKNNSLWAWIMEKLGFERDND   66 (444)
Q Consensus         2 ~P~GIa~D~~---g~~LYVADTe---N----HaIRkIDl~tg--~---VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~   66 (444)
                      .|.||+++++   ++.|||+++.   +    ++|.|+++..+  .   .+++.-                   +..    
T Consensus        74 g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~-------------------~~~----  130 (354)
T 3a9g_A           74 GLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLID-------------------GIP----  130 (354)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEE-------------------EEE----
T ss_pred             ceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEE-------------------cCC----
Confidence            5899999987   6699999985   4    78999987654  1   111110                   000    


Q ss_pred             ccccCCCCCCCCCcceeEEcCCCeEEEEeC-------------CCCEEEEEECCC
Q 013362           67 TKSEKLDPQSLIFPWHLMKSEDDNLLIINR-------------SFETLWIMDLAS  108 (444)
Q Consensus        67 ~~~~~~~~~~Ln~P~gL~~d~dG~LYIADa-------------gnh~IrkIDl~t  108 (444)
                             .....+|.+|+++++|.|||++.             .+.+|++|+++.
T Consensus       131 -------~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A          131 -------GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG  178 (354)
T ss_dssp             -------CCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred             -------CCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence                   01156688999999999999963             236999999863

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.20  E-value=2e-05  Score=75.23  Aligned_cols=85  Identities=11%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC--CC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      .|.|++++++++.||++|+.++.|.++|+.  +| .+.    .  .     ..|  . . .    ...          ..
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~----~--~-----~~~--~-~-~----~~~----------~~  230 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG----K--A-----EVF--I-D-S----TGI----------KG  230 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS----C--C-----EEE--E-E-C----TTS----------SS
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc----C--c-----eEE--E-E-C----CCC----------CC
Confidence            478999999998999999999999999975  44 210    0  0     000  0 0 0    000          34


Q ss_pred             CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      .|.+++++.+|+|||++.++++|+++|+....+.++.
T Consensus       231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~  267 (326)
T 2ghs_A          231 GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYE  267 (326)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred             CCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEE
Confidence            5889999999999999999999999999533444444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.17  E-value=5.1e-05  Score=68.92  Aligned_cols=83  Identities=11%  Similarity=0.025  Sum_probs=61.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.+++++++++.||+++..++.|+.+|+.++.+......+..               +.    .          -..|.
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---------------~~----~----------~~~~~   85 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------------EE----R----------VKSLF   85 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---------------TE----E----------EECTT
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---------------cc----c----------ccccc
Confidence            5899999999999999999999999999988765432222111               00    0          12467


Q ss_pred             eeEEcCCC-eEEEEeC-----------CCCEEEEEECCCCcEEE
Q 013362           82 HLMKSEDD-NLLIINR-----------SFETLWIMDLASGEIKE  113 (444)
Q Consensus        82 gL~~d~dG-~LYIADa-----------gnh~IrkIDl~tG~I~T  113 (444)
                      +++++++| .||+++.           ..++|+.+|+.++++..
T Consensus        86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  129 (337)
T 1pby_B           86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK  129 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred             ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence            88998886 7999973           36899999999887543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.16  E-value=1.2e-05  Score=80.99  Aligned_cols=121  Identities=9%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             CcceEEEecC--CC-EEEEEeCC--CCeEEE--EECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCC
Q 013362            2 RPAASFYHKD--DD-CLYIVDSE--NHAIRR--ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDP   74 (444)
Q Consensus         2 ~P~GIa~D~~--g~-~LYVADTe--NHaIRk--IDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~   74 (444)
                      +|+||.+..+  +. .|||+|..  ++.|..  ++..++ ..+++.+  .                            ..
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~-~~~~~~~--~----------------------------~g  161 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKT--I----------------------------RH  161 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-EEEEEEE--E----------------------------CC
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-EEEEEec--c----------------------------cc
Confidence            7999999663  33 79999987  566555  443333 3333322  0                            01


Q ss_pred             CCCCCcceeEEcCCCeEEEEeC-----------------CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhh
Q 013362           75 QSLIFPWHLMKSEDDNLLIINR-----------------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLK  137 (444)
Q Consensus        75 ~~Ln~P~gL~~d~dG~LYIADa-----------------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~  137 (444)
                      .+|++|-+++++++|.+|+.+.                 ...+|+++|+  ++++.++.+...                 
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~-----------------  222 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDF-----------------  222 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESS-----------------
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcc-----------------
Confidence            1299999999999999999976                 2468999987  466655543211                 


Q ss_pred             cCCcccccccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCC-CCeEEE
Q 013362          138 QMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE-SGVCSN  195 (444)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~-tG~vST  195 (444)
                                      +.|+++       ..++..||+||+..++|+++++. +|.++.
T Consensus       223 ----------------pNGia~-------spDg~~lYvadt~~~~I~~~~~~~~g~l~~  258 (355)
T 3sre_A          223 ----------------ANGINI-------SPDGKYVYIAELLAHKIHVYEKHANWTLTP  258 (355)
T ss_dssp             ----------------EEEEEE-------CTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             ----------------cCcceE-------CCCCCEEEEEeCCCCeEEEEEECCCCcEec
Confidence                            112222       23566899999999999999986 455544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.15  E-value=3.4e-05  Score=73.52  Aligned_cols=73  Identities=12%  Similarity=0.045  Sum_probs=52.1

Q ss_pred             CCCcceeEEcCCCeEEEEeCC------CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccc
Q 013362           77 LIFPWHLMKSEDDNLLIINRS------FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDS  150 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADag------nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~  150 (444)
                      .+.|.+++++++|.|||++.+      ...|+++|  +|.++.+..+...                              
T Consensus       133 ~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~------------------------------  180 (326)
T 2ghs_A          133 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISI------------------------------  180 (326)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESS------------------------------
T ss_pred             CCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcc------------------------------
Confidence            456889999999999999864      47899999  5877665421100                              


Q ss_pred             cccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCC--CC
Q 013362          151 SCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE--SG  191 (444)
Q Consensus       151 ~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~--tG  191 (444)
                         +.++.       +...++.||++|+.+++|.+++++  +|
T Consensus       181 ---~~~i~-------~s~dg~~lyv~~~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          181 ---PNSIC-------FSPDGTTGYFVDTKVNRLMRVPLDARTG  213 (326)
T ss_dssp             ---EEEEE-------ECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             ---cCCeE-------EcCCCCEEEEEECCCCEEEEEEcccccC
Confidence               00111       122456799999999999999986  77

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.14  E-value=0.00012  Score=66.57  Aligned_cols=145  Identities=12%  Similarity=0.152  Sum_probs=90.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC--CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|.+++++++++.||+++..++.|+.+++.  ++.+..+.-....             ..+.   ..          ...
T Consensus       179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~-------------~~~~---~~----------~~~  232 (343)
T 1ri6_A          179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM-------------PENF---SD----------TRW  232 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS-------------CTTC---CS----------CCC
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecccc-------------Cccc---cc----------cCC
Confidence            578899999999999999999999999984  3443322111000             0000   01          456


Q ss_pred             cceeEEcCCC-eEEEEeCCCCEEEEEECC--CCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362           80 PWHLMKSEDD-NLLIINRSFETLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE  156 (444)
Q Consensus        80 P~gL~~d~dG-~LYIADagnh~IrkIDl~--tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G  156 (444)
                      |.+++++++| .||+++...++|+.+|+.  +|..+.+.. .+.    .+                          .+.+
T Consensus       233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~----~~--------------------------~~~~  281 (343)
T 1ri6_A          233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-QPT----ET--------------------------QPRG  281 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-EEC----SS--------------------------SCCC
T ss_pred             ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee-ecC----CC--------------------------ccce
Confidence            7889999886 699999999999999987  555544431 000    00                          0001


Q ss_pred             CCcccccccccccCCeEEEEeCCCCeEEEE--eCCCCeEEEeeeccccccCCceeeee
Q 013362          157 LPYAGLISSSIAFQNHILLCDIVGQRIMRL--NRESGVCSNFQFSNFAILGLPYWFAF  212 (444)
Q Consensus       157 ip~a~~~Sgla~~~~~LyIADT~nhRIRkv--dl~tG~vST~~fsg~g~lg~P~~l~~  212 (444)
                      +.       +...++.||+++...+.|+.+  |.++|....+..-..|  ..|.++.+
T Consensus       282 ~~-------~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g--~~p~~i~~  330 (343)
T 1ri6_A          282 FN-------VDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG--QGPMWVVV  330 (343)
T ss_dssp             EE-------ECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS--SSCCEEEE
T ss_pred             EE-------ECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC--CCCeeEEE
Confidence            11       123456799999888888776  7778877766422222  34555554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.13  E-value=7.6e-05  Score=70.49  Aligned_cols=79  Identities=16%  Similarity=0.114  Sum_probs=57.5

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE  156 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G  156 (444)
                      +..|+++.+..+|++|+++..+++|..+|++ |++..-.+...                                     
T Consensus       124 ~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-------------------------------------  165 (276)
T 3no2_A          124 HAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-------------------------------------  165 (276)
T ss_dssp             GGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-------------------------------------
T ss_pred             cccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-------------------------------------
Confidence            5568888999999999999999999999998 76543332111                                     


Q ss_pred             CCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEee
Q 013362          157 LPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQ  197 (444)
Q Consensus       157 ip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~  197 (444)
                      .|++    .....+++++|++..++||..+|++||.+ -++.
T Consensus       166 ~~~~----~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          166 TPFS----SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             CCCE----EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             Cccc----eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            1111    11224678999999999999999996665 4443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.09  E-value=7e-05  Score=70.76  Aligned_cols=135  Identities=13%  Similarity=0.174  Sum_probs=86.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++.+++|+ ++|+++.+++|..+|+. |.+.               |.|..                    -..|+
T Consensus       126 ~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G~~~---------------w~~~~--------------------~~~~~  168 (276)
T 3no2_A          126 QFRQINKNKKGN-YLVPLFATSEVREIAPN-GQLL---------------NSVKL--------------------SGTPF  168 (276)
T ss_dssp             SCSCCEECTTSC-EEEEETTTTEEEEECTT-SCEE---------------EEEEC--------------------SSCCC
T ss_pred             cccCceECCCCC-EEEEecCCCEEEEECCC-CCEE---------------EEEEC--------------------CCCcc
Confidence            356778887774 88899999999999976 5432               22210                    01356


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      ++....+|++||++..+++|..+|++||++..-.+. ....   +.                            .+++  
T Consensus       169 ~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~-~~~~---~~----------------------------~l~~--  214 (276)
T 3no2_A          169 SSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA-NDIE---GV----------------------------QLFF--  214 (276)
T ss_dssp             EEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG-GGSB---SC----------------------------CCSE--
T ss_pred             ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC-CCCC---Cc----------------------------cccc--
Confidence            677778899999999999999999998976433321 1000   00                            0000  


Q ss_pred             cccccc-ccCCeEEEEeCCCC----------eEEEEeCCCCeEEEeeeccccccCCceee
Q 013362          162 LISSSI-AFQNHILLCDIVGQ----------RIMRLNRESGVCSNFQFSNFAILGLPYWF  210 (444)
Q Consensus       162 ~~Sgla-~~~~~LyIADT~nh----------RIRkvdl~tG~vST~~fsg~g~lg~P~~l  210 (444)
                       |++++ ..++++||++..+|          ++.+++.+...+=+  |.....+|.+...
T Consensus       215 -~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~--~~~~~~~~~~~~~  271 (276)
T 3no2_A          215 -VAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ--LNDKVKFGMISTI  271 (276)
T ss_dssp             -EEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE--ECCTTTSCCCCEE
T ss_pred             -cccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE--ecCcccccceeee
Confidence             22222 34789999997544          68889876555444  5555666666555

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.08  E-value=4.7e-05  Score=74.86  Aligned_cols=78  Identities=14%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             CcceEEEecC---CCEEEEEeCC-------CCeEEEEECCCC--eE---EEec-cCCCcCccCCcchhhhhcccCccccc
Q 013362            2 RPAASFYHKD---DDCLYIVDSE-------NHAIRRADMGRR--VL---ETVY-PTSGISKKNNSLWAWIMEKLGFERDN   65 (444)
Q Consensus         2 ~P~GIa~D~~---g~~LYVADTe-------NHaIRkIDl~tg--~V---tTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a   65 (444)
                      .|.||+++++   ++.|||+++.       +++|.++++..+  .+   +++. +-                   +....
T Consensus        67 g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~-------------------p~~~~  127 (353)
T 2g8s_A           67 GLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQM-------------------PKLST  127 (353)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECS-------------------SCCBS
T ss_pred             CceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEEC-------------------CCCCC
Confidence            4789999986   6699999986       578888876532  22   1111 10                   00001


Q ss_pred             CccccCCCCCCCCCcceeEEcCCCeEEEEeCC-------------CCEEEEEECCC
Q 013362           66 DTKSEKLDPQSLIFPWHLMKSEDDNLLIINRS-------------FETLWIMDLAS  108 (444)
Q Consensus        66 ~~~~~~~~~~~Ln~P~gL~~d~dG~LYIADag-------------nh~IrkIDl~t  108 (444)
                      .          ..+|.+|++++||.|||+.-.             ..+|++||++.
T Consensus       128 ~----------~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A          128 G----------NHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             S----------SCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             C----------cccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence            1          556889999999999999622             36999999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.98  E-value=0.00017  Score=66.01  Aligned_cols=77  Identities=12%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      +.|+++.+. +.+||+.+.++.|+.+|+.++.+......+.                                 ...|.+
T Consensus         2 ~~g~~~~~~-~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------------------------~~~~~~   47 (349)
T 1jmx_B            2 DTGPALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---------------------------------KFGPGT   47 (349)
T ss_dssp             --CCCCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSS---------------------------------CCSSCE
T ss_pred             CccccccCC-CEEEEEeCCCCeEEEEECCCCcEEEEEecCC---------------------------------CCCCce
Confidence            568888655 4899999999999999998886532211110                                 123678


Q ss_pred             eEEcCCCe-EEEEeCCCCEEEEEECCCCcEEE
Q 013362           83 LMKSEDDN-LLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        83 L~~d~dG~-LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      ++++++|. +|++...+++|+++|+.+|++..
T Consensus        48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B           48 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            88888874 99999999999999999997653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.94  E-value=0.00066  Score=61.58  Aligned_cols=76  Identities=17%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             CcceEEEecCCCEEEEEeC-----------CCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCcccc
Q 013362            2 RPAASFYHKDDDCLYIVDS-----------ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSE   70 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADT-----------eNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~   70 (444)
                      .|.+++++++|+.||+++.           .++.|+.+|+.++.+......+                            
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----------------------------  134 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP----------------------------  134 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC----------------------------
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC----------------------------
Confidence            6889999999999999973           3689999999877553221111                            


Q ss_pred             CCCCCCCCCcceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEee
Q 013362           71 KLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                             ..|.+++++++|. ||++   ++.|+.+|+.+|++....
T Consensus       135 -------~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~  170 (337)
T 1pby_B          135 -------RQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             -------SSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEE
T ss_pred             -------CCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeee
Confidence                   1256778888765 9998   478999999999875433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.87  E-value=0.00023  Score=68.07  Aligned_cols=138  Identities=7%  Similarity=-0.019  Sum_probs=84.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC--CCeEE----EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RRVLE----TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg~Vt----TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      .|.+++++++|+.||+++..++.|+.+++.  +|.+.    ++.-.. .        ++. +..+..+  .         
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~--------~~~-g~~~~~~--~---------  252 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP-P--------GIP-DRDPETG--K---------  252 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC-T--------TCC-CBCTTTS--S---------
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC-C--------CcC-Ccccccc--c---------
Confidence            488999999999999999988999887653  56542    222110 0        000 0000000  1         


Q ss_pred             CCCCcceeE-EcCCC-eEEEEeCCCC-----EEEEEECC-CCcEEEeecCCccceeecceehhhhhhhhhcCCccccccc
Q 013362           76 SLIFPWHLM-KSEDD-NLLIINRSFE-----TLWIMDLA-SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQ  147 (444)
Q Consensus        76 ~Ln~P~gL~-~d~dG-~LYIADagnh-----~IrkIDl~-tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~  147 (444)
                       ...|.+++ +++|| .||+++++.+     +|+.++++ +|+++.+..-.+.                           
T Consensus       253 -~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~---------------------------  304 (365)
T 1jof_A          253 -GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT---------------------------  304 (365)
T ss_dssp             -BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC---------------------------
T ss_pred             -ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec---------------------------
Confidence             44689999 99987 5899998877     88888875 7887653210000                           


Q ss_pred             ccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEE
Q 013362          148 IDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCS  194 (444)
Q Consensus       148 ~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vS  194 (444)
                        ....+.+++++  |..+  +++.||+++..+++|+.++++++..+
T Consensus       305 --~~~~~~~~a~s--p~~~--dg~~l~v~~~~~~~v~v~~~~~~~l~  345 (365)
T 1jof_A          305 --PTSGGHSNAVS--PCPW--SDEWMAITDDQEGWLEIYRWKDEFLH  345 (365)
T ss_dssp             --SSCCTTCCCEE--ECTT--CTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred             --CCCCcccceec--CCCc--CCCEEEEEEcCCCeEEEEEEchhhCc
Confidence              00011122210  1011  46789999998899998888776443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.86  E-value=0.00052  Score=65.48  Aligned_cols=113  Identities=15%  Similarity=0.213  Sum_probs=80.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++++.||++.+.++.|+.+|+.++.+......                                   -..|.
T Consensus       304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-----------------------------------~~~~~  348 (433)
T 3bws_A          304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV-----------------------------------FDKPN  348 (433)
T ss_dssp             CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC-----------------------------------SSSEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC-----------------------------------CCCCC
Confidence            4778999999989999999999999999987765432221                                   12356


Q ss_pred             eeEEcCCC-eEEEEeCCCC--------------EEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccc
Q 013362           82 HLMKSEDD-NLLIINRSFE--------------TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLH  146 (444)
Q Consensus        82 gL~~d~dG-~LYIADagnh--------------~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~  146 (444)
                      +++++++| .||+++..++              +|+.+|+.++++.....+...+.                        
T Consensus       349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~------------------------  404 (433)
T 3bws_A          349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPT------------------------  404 (433)
T ss_dssp             EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEE------------------------
T ss_pred             eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCc------------------------
Confidence            88888876 4999988754              99999999987655443211110                        


Q ss_pred             cccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCC
Q 013362          147 QIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE  189 (444)
Q Consensus       147 ~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~  189 (444)
                               ++.       +...+..||+++...+.|+.++++
T Consensus       405 ---------~~~-------~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          405 ---------GLD-------VSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ---------EEE-------ECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ---------eEE-------EcCCCCEEEEEECCCCeEEEEEec
Confidence                     011       123456789999888999998875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.82  E-value=0.00066  Score=64.77  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++++.||++...++.|+.+|+.++.+......                                   -..|.
T Consensus       213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----------------------------------~~~~~  257 (433)
T 3bws_A          213 WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----------------------------------IGLPR  257 (433)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----------------------------------CSEEE
T ss_pred             CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----------------------------------CCCce
Confidence            4788999999999999999999999999987755322111                                   11267


Q ss_pred             eeEEcCCC-eEEEEeC-------CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccccccc
Q 013362           82 HLMKSEDD-NLLIINR-------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS  153 (444)
Q Consensus        82 gL~~d~dG-~LYIADa-------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~  153 (444)
                      +++++++| .||++..       .+++|+.+|+.+|++.........+.                               
T Consensus       258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------------------------------  306 (433)
T 3bws_A          258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKR-------------------------------  306 (433)
T ss_dssp             EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEE-------------------------------
T ss_pred             EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcc-------------------------------
Confidence            88888776 6888875       46799999999887654432100000                               


Q ss_pred             ccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          154 LKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       154 ~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                        ++.       +...++.||++....++|+.+|++++.+..
T Consensus       307 --~~~-------~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~  339 (433)
T 3bws_A          307 --HIV-------SGNTENKIYVSDMCCSKIEVYDLKEKKVQK  339 (433)
T ss_dssp             --EEE-------ECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             --eEE-------ECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence              001       112355799999999999999999887643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.79  E-value=0.00017  Score=74.03  Aligned_cols=80  Identities=11%  Similarity=0.127  Sum_probs=59.7

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.+|+++++| .|||++...++|++++..+|..++++......         . .   +   ..          ...+.
T Consensus        28 ~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~---------~-~---~---~g----------~~Gll   80 (454)
T 1cru_A           28 KPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIV---------N-D---A---DG----------QNGLL   80 (454)
T ss_dssp             SEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCC---------C-C---T---TS----------SCSEE
T ss_pred             CceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccc---------c-c---c---CC----------CCcee
Confidence            79999999998 59999998889999998778888776542110         0 0   0   00          34567


Q ss_pred             eeEEcC----CCeEEEEeCC------------CCEEEEEECCC
Q 013362           82 HLMKSE----DDNLLIINRS------------FETLWIMDLAS  108 (444)
Q Consensus        82 gL~~d~----dG~LYIADag------------nh~IrkIDl~t  108 (444)
                      +|++++    ++.|||+++.            .++|.+++++.
T Consensus        81 gia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~  123 (454)
T 1cru_A           81 GFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNK  123 (454)
T ss_dssp             EEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEET
T ss_pred             EEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECC
Confidence            999997    6899999974            56899998753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.78  E-value=0.00023  Score=69.98  Aligned_cols=79  Identities=10%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEE-eccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLET-VYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtT-VAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .+|.+|+++++|..|||++. +.+|++++. +|.+.+ +++....       +           ...          ...
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~-~g~~~~~~~~~~~v-------~-----------~~g----------~~g   67 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLR-GGELRHWQA-GKGLSAPLSGVPDV-------W-----------AHG----------QGG   67 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEET-TTEEEEEET-TTEECCCCBSCCCC-------C-----------CST----------TCS
T ss_pred             CCcEEEEEcCCCCEEEEEeC-CceEEEEeC-CCceeeEecCCccc-------c-----------cCC----------CCC
Confidence            37999999999844999998 489999985 555533 4433211       0           001          445


Q ss_pred             cceeEEcC----CCeEEEEeCC-------CCEEEEEECCCC
Q 013362           80 PWHLMKSE----DDNLLIINRS-------FETLWIMDLASG  109 (444)
Q Consensus        80 P~gL~~d~----dG~LYIADag-------nh~IrkIDl~tG  109 (444)
                      |.+|++++    ++.|||+++.       .++|.+++++.+
T Consensus        68 ~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~  108 (353)
T 2g8s_A           68 LLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDD  108 (353)
T ss_dssp             EEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTT
T ss_pred             ceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCC
Confidence            78999987    4899999876       578999987543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.72  E-value=0.0016  Score=67.39  Aligned_cols=169  Identities=12%  Similarity=0.026  Sum_probs=103.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEC--CCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADM--GRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl--~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      .|++++++++|+.||+++.. +.|+.+|+  .++.+ .++. .                                   =.
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~-~-----------------------------------g~  222 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIK-I-----------------------------------GI  222 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEE-C-----------------------------------CS
T ss_pred             ccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEe-c-----------------------------------CC
Confidence            37899999999999999987 99999999  66643 2232 1                                   12


Q ss_pred             CcceeEEcC----CC-eEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccccccc
Q 013362           79 FPWHLMKSE----DD-NLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS  153 (444)
Q Consensus        79 ~P~gL~~d~----dG-~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~  153 (444)
                      .|++|++++    +| .||+++...++|..||..++++.......+...  .++              .|.         
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~--~~~--------------~~~---------  277 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV--DTQ--------------TYH---------  277 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS--SSC--------------CEE---------
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc--Ccc--------------ccc---------
Confidence            378999987    75 699999999999999999987654432111000  000              000         


Q ss_pred             ccCCCccccccccc--ccCCeEEEEeCCCCeEEEEeCCCCeE---EEeeeccccccCCceeeee-ccceeeecccccCCc
Q 013362          154 LKELPYAGLISSSI--AFQNHILLCDIVGQRIMRLNRESGVC---SNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGS  227 (444)
Q Consensus       154 ~~Gip~a~~~Sgla--~~~~~LyIADT~nhRIRkvdl~tG~v---ST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~  227 (444)
                      +.  |   .+.++.  ..++.+|++..+..+|..+|.+++..   .++.   .+  ..|..+.+ |-++.+    +.+..
T Consensus       278 ~~--~---~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---~~--~~~~~~~~spdg~~l----~va~~  343 (543)
T 1nir_A          278 PE--P---RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---AA--PFLHDGGWDSSHRYF----MTAAN  343 (543)
T ss_dssp             SC--C---CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---CC--SSCCCEEECTTSCEE----EEEEG
T ss_pred             cC--C---ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---cC--cCccCceECCCCCEE----EEEec
Confidence            00  0   011221  23668999999999999999987643   2332   12  22333332 433211    11223


Q ss_pred             ccceeeeeecCCCeeeEEE
Q 013362          228 WTDHIQRCSLLPGRIDIKV  246 (444)
Q Consensus       228 ~~~~i~~v~~~pGri~i~v  246 (444)
                      ....|.-+|+..|++.=.+
T Consensus       344 ~~~~v~v~D~~tg~l~~~i  362 (543)
T 1nir_A          344 NSNKVAVIDSKDRRLSALV  362 (543)
T ss_dssp             GGTEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEee
Confidence            3456777888888765433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.66  E-value=0.00029  Score=72.35  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=62.5

Q ss_pred             CcceEEEecCCCEEEEEeC---------CCCeEEEEECCCCeE-EEec-c-CCCcCccCCcchhhhhcccCcccccCccc
Q 013362            2 RPAASFYHKDDDCLYIVDS---------ENHAIRRADMGRRVL-ETVY-P-TSGISKKNNSLWAWIMEKLGFERDNDTKS   69 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADT---------eNHaIRkIDl~tg~V-tTVA-G-tG~~~~~~~~l~g~~~~~~G~a~~a~~~~   69 (444)
                      .| |++++++|+.|||+++         ..+.|..||..++.+ .+|. | .+..                    ..   
T Consensus       120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~--------------------~~---  175 (426)
T 3c75_H          120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF--------------------LV---  175 (426)
T ss_dssp             SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC--------------------CB---
T ss_pred             CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc--------------------cc---
Confidence            69 9999999999999997         467899999998765 3442 2 1100                    01   


Q ss_pred             cCCCCCCCCCcceeEEcCCC-eEEEEeCC-CCEEEEEECCCCcEE
Q 013362           70 EKLDPQSLIFPWHLMKSEDD-NLLIINRS-FETLWIMDLASGEIK  112 (444)
Q Consensus        70 ~~~~~~~Ln~P~gL~~d~dG-~LYIADag-nh~IrkIDl~tG~I~  112 (444)
                             ...|.++++++|| .|||++.. .+.|.+||+.++++.
T Consensus       176 -------g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          176 -------GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             -------SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             -------CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence                   3569999999886 69999975 899999999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.65  E-value=0.00029  Score=64.45  Aligned_cols=82  Identities=13%  Similarity=0.078  Sum_probs=61.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++++.||++...++.|+.+|+.++.+......+..                +.  ..          -..|.
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~----------------~~--~~----------~~~~~   95 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV----------------PG--EV----------GRSMY   95 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS----------------TT--EE----------EECSS
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc----------------cc--cc----------ccccc
Confidence            5889999999989999999999999999998876533222111                00  01          23578


Q ss_pred             eeEEcCCC-eEEEEeCC-----------CCEEEEEECCCCcE
Q 013362           82 HLMKSEDD-NLLIINRS-----------FETLWIMDLASGEI  111 (444)
Q Consensus        82 gL~~d~dG-~LYIADag-----------nh~IrkIDl~tG~I  111 (444)
                      +++++++| .||++...           .++|+.+|+.+|++
T Consensus        96 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           96 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             ceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence            89998886 68888855           67999999987653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.61  E-value=0.0017  Score=62.37  Aligned_cols=179  Identities=12%  Similarity=0.078  Sum_probs=105.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .++||+|+++++.||++.-++..|-++|+....+.++. -+                 |                +.-|-
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~-l~-----------------g----------------~~D~E   73 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP-LD-----------------F----------------VKDLE   73 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE-CS-----------------S----------------CSSEE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe-cC-----------------C----------------CCChH
Confidence            58999999988899987777999999998744444441 10                 0                23367


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCC-CcEEEee--c-CC---c-----cceeec--c-eehhhhhhhhhc-CCc-ccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLAS-GEIKEAV--K-GF---S-----KVLEIC--G-VLVMEKVFLLKQ-MPQ-DWL  144 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~t-G~I~Tia--g-G~---~-----~~~~~~--G-~li~~~~a~l~~-~~~-~~~  144 (444)
                      ||++.++|.+||++.++|++..++..+ +.+..+.  . +.   +     +.+..+  + .++.     .++ .|. -|.
T Consensus        74 GIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-----a~E~~p~~i~~  148 (255)
T 3qqz_A           74 TIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-----FKEKNPIEVYK  148 (255)
T ss_dssp             EEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-----EEESSSEEEEE
T ss_pred             HeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-----EECcCCceEEE
Confidence            899999899999999999999998654 3332111  1 11   1     111111  1 1111     111 121 111


Q ss_pred             ccccccc---ccc-----cCCCcccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeecc
Q 013362          145 LHQIDSS---CSL-----KELPYAGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPL  214 (444)
Q Consensus       145 ~~~~~~~---~~~-----~Gip~a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL  214 (444)
                      -+....+   ..+     .+-.+..-+|+++.  ..++|||...+++++..+|+++..++.+.+. -|..|+.-.+..|=
T Consensus       149 ~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~-~g~~~l~~~~~qpE  227 (255)
T 3qqz_A          149 VNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLT-KGSRGLSHNIKQAE  227 (255)
T ss_dssp             EESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECS-TTGGGCSSCCCSEE
T ss_pred             EcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcC-CccCCcccccCCCC
Confidence            0000000   000     00001112566664  3568999999999999999998877777655 35666667777776


Q ss_pred             ceeeec
Q 013362          215 ERVYAV  220 (444)
Q Consensus       215 ~~v~~~  220 (444)
                      +++++.
T Consensus       228 Gia~d~  233 (255)
T 3qqz_A          228 GVAMDA  233 (255)
T ss_dssp             EEEECT
T ss_pred             eeEECC
Confidence            666643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.59  E-value=0.00054  Score=68.75  Aligned_cols=78  Identities=13%  Similarity=-0.037  Sum_probs=59.5

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.+|++.++| .|||++...++|++++..++..+.+++....       +  .         ..          ...|.
T Consensus        33 ~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v-------~--~---------~g----------~~Gll   83 (347)
T 3das_A           33 SPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGV-------S--P---------SG----------EGGLL   83 (347)
T ss_dssp             SEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTC-------C--C---------BT----------TBSEE
T ss_pred             CceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCce-------e--e---------cC----------CCCce
Confidence            79999999998 5999999889999999877887777654211       0  0         01          56678


Q ss_pred             eeEEcC----CCeEEEEeC--CCCEEEEEECCC
Q 013362           82 HLMKSE----DDNLLIINR--SFETLWIMDLAS  108 (444)
Q Consensus        82 gL~~d~----dG~LYIADa--gnh~IrkIDl~t  108 (444)
                      +|++++    ++.||++.+  ..++|.++.+..
T Consensus        84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~  116 (347)
T 3das_A           84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred             eeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence            999986    489999764  567899998765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.55  E-value=0.00077  Score=69.21  Aligned_cols=121  Identities=11%  Similarity=0.059  Sum_probs=82.0

Q ss_pred             cCCCEEEEEeCCC----CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEE
Q 013362           10 KDDDCLYIVDSEN----HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMK   85 (444)
Q Consensus        10 ~~g~~LYVADTeN----HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~   85 (444)
                      ++++.+||++...    +.|-.||+.+++|.--...|                                   ..| ++++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-----------------------------------~~P-gia~  125 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-----------------------------------FLP-HPVA  125 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-----------------------------------SSC-EEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-----------------------------------CCC-ceEE
Confidence            3567899999864    79999999998765322222                                   138 8999


Q ss_pred             cCCC-eEEEEeC---------CCCEEEEEECCCCcEE-Eee-cCCccceeecceehhhhhhhhhcCCccccccccccccc
Q 013362           86 SEDD-NLLIINR---------SFETLWIMDLASGEIK-EAV-KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS  153 (444)
Q Consensus        86 d~dG-~LYIADa---------gnh~IrkIDl~tG~I~-Tia-gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~  153 (444)
                      ++|| .|||++.         ..+.|.+||+.++++. +|. +|.++..                           .+..
T Consensus       126 SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~---------------------------~g~~  178 (426)
T 3c75_H          126 AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL---------------------------VGTY  178 (426)
T ss_dssp             CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC---------------------------BSCC
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc---------------------------cCCC
Confidence            9885 5999996         4678999999998753 443 2111110                           0011


Q ss_pred             ccCCCcccccccccccCCeEEEEeCC-CCeEEEEeCCCCeE-EEeeecc
Q 013362          154 LKELPYAGLISSSIAFQNHILLCDIV-GQRIMRLNRESGVC-SNFQFSN  200 (444)
Q Consensus       154 ~~Gip~a~~~Sgla~~~~~LyIADT~-nhRIRkvdl~tG~v-ST~~fsg  200 (444)
                      +.++.       +..+++.|||+... .+.|..||+.++.+ .+|...+
T Consensus       179 P~~~~-------~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g  220 (426)
T 3c75_H          179 QWMNA-------LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD  220 (426)
T ss_dssp             GGGSE-------ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             cceEE-------EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC
Confidence            11222       23467799999865 78999999999877 4665443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.53  E-value=0.002  Score=63.63  Aligned_cols=81  Identities=9%  Similarity=0.091  Sum_probs=58.7

Q ss_pred             CcceEEEecCCCEEEEEeCC---------CCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccC
Q 013362            2 RPAASFYHKDDDCLYIVDSE---------NHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEK   71 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe---------NHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~   71 (444)
                      .| |++++++|+.|||+++.         .+.|..+|..++.+ .++. .+..                 .....     
T Consensus        68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~-----------------~~~~~-----  123 (373)
T 2mad_H           68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDA-----------------PRFDV-----  123 (373)
T ss_pred             CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE-CCCc-----------------ccccc-----
Confidence            57 99999999999999863         56799999876544 3332 2100                 00000     


Q ss_pred             CCCCCCCCcceeEEcCCC-eEEEEeCC-CCEEEEEECCCCcEE
Q 013362           72 LDPQSLIFPWHLMKSEDD-NLLIINRS-FETLWIMDLASGEIK  112 (444)
Q Consensus        72 ~~~~~Ln~P~gL~~d~dG-~LYIADag-nh~IrkIDl~tG~I~  112 (444)
                           -..|.++++++|| .||+++.. .++|..|| +++++.
T Consensus       124 -----g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~  160 (373)
T 2mad_H          124 -----GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD  160 (373)
T ss_pred             -----CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence                 2468999999885 59999976 79999999 999764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.51  E-value=0.00078  Score=68.59  Aligned_cols=123  Identities=8%  Similarity=-0.000  Sum_probs=83.5

Q ss_pred             EecCCCEEEEEeCC----CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            8 YHKDDDCLYIVDSE----NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         8 ~D~~g~~LYVADTe----NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      -.|+++.|||+|.+    .+.|..||..++.+..-..+|                                   ..| ++
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-----------------------------------~~P-~v   83 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----------------------------------FLP-NP   83 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----------------------------------SSC-EE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-----------------------------------CCC-cE
Confidence            35788999999997    789999999998765333332                                   115 48


Q ss_pred             EEcCCC-eEEEEeC---------CCCEEEEEECCCCcE-EEeecCC-ccceeecceehhhhhhhhhcCCccccccccccc
Q 013362           84 MKSEDD-NLLIINR---------SFETLWIMDLASGEI-KEAVKGF-SKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSS  151 (444)
Q Consensus        84 ~~d~dG-~LYIADa---------gnh~IrkIDl~tG~I-~TiagG~-~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~  151 (444)
                      ++++|| .||++++         ..+.|.+||+.|+++ .++.-|. .+..                           .+
T Consensus        84 a~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~---------------------------~g  136 (386)
T 3sjl_D           84 VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL---------------------------VG  136 (386)
T ss_dssp             EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC---------------------------BS
T ss_pred             EECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc---------------------------cC
Confidence            888886 5999995         357799999999975 4443211 1110                           00


Q ss_pred             ccccCCCcccccccccccCCeEEEEeCC-CCeEEEEeCCCCeE-EEeeecc
Q 013362          152 CSLKELPYAGLISSSIAFQNHILLCDIV-GQRIMRLNRESGVC-SNFQFSN  200 (444)
Q Consensus       152 ~~~~Gip~a~~~Sgla~~~~~LyIADT~-nhRIRkvdl~tG~v-ST~~fsg  200 (444)
                      ..+.++.       +..++..||++... .+.|..||+.++.+ .+|...+
T Consensus       137 ~~P~~~a-------~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          137 TYPWMTS-------LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             CCGGGEE-------ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             CCCceEE-------EcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence            1111111       23467789999864 78999999999986 5665554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.46  E-value=0.0009  Score=68.11  Aligned_cols=84  Identities=14%  Similarity=0.148  Sum_probs=63.2

Q ss_pred             CcceEEEecCCCEEEEEeCC---------CCeEEEEECCCCeE-EEec-cCCCcCccCCcchhhhhcccCcccccCcccc
Q 013362            2 RPAASFYHKDDDCLYIVDSE---------NHAIRRADMGRRVL-ETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSE   70 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe---------NHaIRkIDl~tg~V-tTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~   70 (444)
                      .|. ++++++|..|||+++.         .+.|..||..++.+ .+|. |.|..                    .     
T Consensus        80 ~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r--------------------~-----  133 (386)
T 3sjl_D           80 LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--------------------F-----  133 (386)
T ss_dssp             SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------------------C-----
T ss_pred             CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc--------------------c-----
Confidence            585 9999999999999963         56799999998864 4442 32211                    0     


Q ss_pred             CCCCCCCCCcceeEEcCCC-eEEEEeCC-CCEEEEEECCCCcE-EEee
Q 013362           71 KLDPQSLIFPWHLMKSEDD-NLLIINRS-FETLWIMDLASGEI-KEAV  115 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~dG-~LYIADag-nh~IrkIDl~tG~I-~Tia  115 (444)
                          +.-.+|+++++++|| .|||++.. .+.|..||+.++++ .+|.
T Consensus       134 ----~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          134 ----LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             ----CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ----ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence                004579999999986 59999975 79999999999975 4453

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.46  E-value=0.0071  Score=62.60  Aligned_cols=129  Identities=6%  Similarity=-0.075  Sum_probs=87.7

Q ss_pred             CcceEEEec----CCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCC
Q 013362            2 RPAASFYHK----DDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS   76 (444)
Q Consensus         2 ~P~GIa~D~----~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~   76 (444)
                      .|.++++++    +|+.||++....+.|+.+|..++.+ .++...|..            . .+.         .|++  
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~------------~-~~~---------~~~~--  278 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT------------V-DTQ---------TYHP--  278 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC------------S-SSC---------CEES--
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc------------c-Ccc---------cccc--
Confidence            589999999    9999999999899999999988754 444432211            0 000         0111  


Q ss_pred             CCCcceeEEcCC-CeEEEEeCCCCEEEEEECCCCcE---EEeecCCccceeecceehhhhhhhhhcCCcccccccccccc
Q 013362           77 LIFPWHLMKSED-DNLLIINRSFETLWIMDLASGEI---KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSC  152 (444)
Q Consensus        77 Ln~P~gL~~d~d-G~LYIADagnh~IrkIDl~tG~I---~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~  152 (444)
                      -..|.+++++.+ +.+|++....++||.+|..++..   +++..|  .                                
T Consensus       279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~--~--------------------------------  324 (543)
T 1nir_A          279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA--P--------------------------------  324 (543)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC--S--------------------------------
T ss_pred             CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC--c--------------------------------
Confidence            124678888875 67999999999999999987642   222210  0                                


Q ss_pred             cccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          153 SLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       153 ~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                      .+.++.       +...+..+|++....+.|..+|+++|.+..
T Consensus       325 ~~~~~~-------~spdg~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          325 FLHDGG-------WDSSHRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             SCCCEE-------ECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CccCce-------ECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence            000111       123466799999989999999999998754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.45  E-value=0.00035  Score=70.12  Aligned_cols=83  Identities=4%  Similarity=-0.118  Sum_probs=62.5

Q ss_pred             CcceEEEecCCCEEEEEeC---------CCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccC
Q 013362            2 RPAASFYHKDDDCLYIVDS---------ENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEK   71 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADT---------eNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~   71 (444)
                      .| |+++++++..|||+++         ..+.|..||+.++. +.+|.-.|..        +|          ..     
T Consensus        67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~--------~~----------~~-----  122 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP--------RF----------SV-----  122 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC--------SC----------CB-----
T ss_pred             CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc--------cc----------cc-----
Confidence            68 9999999999999995         47899999999875 4455311101        00          01     


Q ss_pred             CCCCCCCCcceeEEcCCC-eEEEEeCC-CCEEEE--EECCCCcEEEee
Q 013362           72 LDPQSLIFPWHLMKSEDD-NLLIINRS-FETLWI--MDLASGEIKEAV  115 (444)
Q Consensus        72 ~~~~~Ln~P~gL~~d~dG-~LYIADag-nh~Irk--IDl~tG~I~Tia  115 (444)
                           ...|.++++++|| .|||++.+ .+.+..  ||+.+  +.++.
T Consensus       123 -----g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~  163 (368)
T 1mda_H          123 -----GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTK  163 (368)
T ss_dssp             -----SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEE
T ss_pred             -----CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEE
Confidence                 5679999999986 69999986 688999  99987  66554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.37  E-value=0.0014  Score=63.15  Aligned_cols=81  Identities=12%  Similarity=0.246  Sum_probs=62.3

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|+||++|+..+.|||...++++|-.+|+....+..+.=.+..              .|+  ...          +..|-
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~--------------~~l--~~~----------~~qpE  227 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGS--------------RGL--SHN----------IKQAE  227 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTG--------------GGC--SSC----------CCSEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCcc--------------CCc--ccc----------cCCCC
Confidence            5899999999999999999999999999877666665422111              122  112          78899


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCC
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASG  109 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG  109 (444)
                      ||++|++|+|||+.-.| .+|++....|
T Consensus       228 Gia~d~~G~lyIvsE~n-~~y~f~~~~~  254 (255)
T 3qqz_A          228 GVAMDASGNIYIVSEPN-RFYRFTPQSS  254 (255)
T ss_dssp             EEEECTTCCEEEEETTT-EEEEEEC---
T ss_pred             eeEECCCCCEEEEcCCc-eEEEEEecCC
Confidence            99999999999997775 9999987654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.30  E-value=0.002  Score=69.36  Aligned_cols=42  Identities=21%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             CCCCCcceeEEcCCCeEEE-EeC-----------CCCEEEEEECCCCcEEEeec
Q 013362           75 QSLIFPWHLMKSEDDNLLI-INR-----------SFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        75 ~~Ln~P~gL~~d~dG~LYI-ADa-----------gnh~IrkIDl~tG~I~Tiag  116 (444)
                      ..|++|-+|+++++|+||| .|.           +++++|++++.+|+++.++.
T Consensus       473 ~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~  526 (592)
T 4a9v_A          473 NMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV  526 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE
T ss_pred             CccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe
Confidence            4599999999999999999 786           47799999999999999884

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.29  E-value=0.0053  Score=64.71  Aligned_cols=75  Identities=13%  Similarity=0.007  Sum_probs=57.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC--CCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      .|++++++++|..|||+.. .+.|..||+.  ++.+ .++. .                                   =.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~-~-----------------------------------G~  240 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIK-I-----------------------------------GS  240 (567)
T ss_dssp             CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEE-C-----------------------------------CS
T ss_pred             CccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEe-c-----------------------------------CC
Confidence            5889999999999999974 5689999984  4432 2221 1                                   12


Q ss_pred             CcceeEEc----CCC-eEEEEeCCCCEEEEEECCCCcEEE
Q 013362           79 FPWHLMKS----EDD-NLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        79 ~P~gL~~d----~dG-~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      .|.+++++    +|| .||+++...++|..||..|.++..
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~  280 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK  280 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE
Confidence            37899998    365 799999999999999999987543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.23  E-value=0.0011  Score=66.76  Aligned_cols=73  Identities=12%  Similarity=0.062  Sum_probs=53.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .|.||+++++++.||||||..++|+++++. +|.++..     .                          +|  ..-..|
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~-----~--------------------------~~--~~~g~P  268 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL-----R--------------------------VL--SFDTLV  268 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE-----E--------------------------EE--ECSSEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC-----E--------------------------EE--eCCCCC
Confidence            589999999999999999999999999974 2332210     0                          01  002458


Q ss_pred             ceeEEcC-CCeEEEEeC-CCCEEEEEECC
Q 013362           81 WHLMKSE-DDNLLIINR-SFETLWIMDLA  107 (444)
Q Consensus        81 ~gL~~d~-dG~LYIADa-gnh~IrkIDl~  107 (444)
                      -++++|. +|+||||.. +..+|.++|+.
T Consensus       269 DGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             ceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            8999999 599999764 55677777775

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.23  E-value=0.0016  Score=64.33  Aligned_cols=76  Identities=18%  Similarity=0.235  Sum_probs=60.0

Q ss_pred             Ccce---EEEecCCCEEEEEeC---------CCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCcc
Q 013362            2 RPAA---SFYHKDDDCLYIVDS---------ENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTK   68 (444)
Q Consensus         2 ~P~G---Ia~D~~g~~LYVADT---------eNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~   68 (444)
                      +|.|   ++++++++.|||+..         .++.|-.||+.++++ .+|. .|                          
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g--------------------------  317 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LG--------------------------  317 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CC--------------------------
Confidence            3666   899999999999864         346899999998876 5552 21                          


Q ss_pred             ccCCCCCCCCCcceeEEcCCCe--EEEEeCCCCEEEEEECCCCcEEE
Q 013362           69 SEKLDPQSLIFPWHLMKSEDDN--LLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        69 ~~~~~~~~Ln~P~gL~~d~dG~--LYIADagnh~IrkIDl~tG~I~T  113 (444)
                               ..||+++++.||.  ||++..+.+.|..||+.++++..
T Consensus       318 ---------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          318 ---------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             ---------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence                     1378999999875  88888889999999999998653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.96  E-value=0.0022  Score=62.34  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=61.0

Q ss_pred             CcceEEEecCCCEEEEEeC---------CCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccC
Q 013362            2 RPAASFYHKDDDCLYIVDS---------ENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEK   71 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADT---------eNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~   71 (444)
                      .| +++++++|+.||++..         ..+.|+.+|+.++. +.++.-.+..                   ...     
T Consensus        52 ~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-------------------~~~-----  106 (361)
T 2oiz_A           52 NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-------------------VQG-----  106 (361)
T ss_dssp             EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-------------------CCB-----
T ss_pred             CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-------------------ccc-----
Confidence            47 9999999999999985         24679999988764 4444311100                   001     


Q ss_pred             CCCCCCCCcceeEEcCCC-eEEEEeCC-CCEEEEEECCCCcEEE
Q 013362           72 LDPQSLIFPWHLMKSEDD-NLLIINRS-FETLWIMDLASGEIKE  113 (444)
Q Consensus        72 ~~~~~Ln~P~gL~~d~dG-~LYIADag-nh~IrkIDl~tG~I~T  113 (444)
                           -..|.+++++++| .||+++.+ .+.|..||+.++++..
T Consensus       107 -----g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~  145 (361)
T 2oiz_A          107 -----LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE  145 (361)
T ss_dssp             -----CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred             -----CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence                 3569999999886 69999986 7899999999987643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.86  E-value=0.014  Score=56.63  Aligned_cols=108  Identities=11%  Similarity=0.157  Sum_probs=75.4

Q ss_pred             EEecCCCEEEEEeCCC-------------CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCC
Q 013362            7 FYHKDDDCLYIVDSEN-------------HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLD   73 (444)
Q Consensus         7 a~D~~g~~LYVADTeN-------------HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~   73 (444)
                      .++++|+.||.++..+             |.||++++..+..+.|.-.  .                 +           
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--~-----------------~-----------  108 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--P-----------------C-----------  108 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--C-----------------E-----------
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--C-----------------c-----------
Confidence            3456788999997654             7999999876644444211  0                 0           


Q ss_pred             CCCCCCcceeEEcCCCeEEEEe---CCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccc
Q 013362           74 PQSLIFPWHLMKSEDDNLLIIN---RSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDS  150 (444)
Q Consensus        74 ~~~Ln~P~gL~~d~dG~LYIAD---agnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~  150 (444)
                             ..+++++ +.||.+|   .++..|++++++....+.|..+..                               
T Consensus       109 -------~~~s~~g-~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-------------------------------  149 (302)
T 3s25_A          109 -------IYASLIG-NYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-------------------------------  149 (302)
T ss_dssp             -------EEEEEET-TEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-------------------------------
T ss_pred             -------cEEEEeC-CEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-------------------------------
Confidence                   0234455 7899999   899999999998666665553210                               


Q ss_pred             cccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362          151 SCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       151 ~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~  196 (444)
                            .|       +...++.||.+|....+|.+++++++....+
T Consensus       150 ------~~-------~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l  182 (302)
T 3s25_A          150 ------FT-------CNTSDRYFYYNNPKNGQLYRYDTASQSEALF  182 (302)
T ss_dssp             ------CC-------SEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred             ------eE-------eeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence                  11       1235778999999889999999999988877

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.84  E-value=0.0019  Score=66.20  Aligned_cols=39  Identities=21%  Similarity=0.338  Sum_probs=36.0

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      |.+||+|+++++|.|||+++..++|++++..+|..++++
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~   64 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVF   64 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEe
Confidence            899999999999999999999899999998788887766

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.72  E-value=0.016  Score=56.23  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=75.5

Q ss_pred             eEEEecCCCEEEEEe---CCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            5 ASFYHKDDDCLYIVD---SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         5 GIa~D~~g~~LYVAD---TeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +.++.++++.||++|   .++..|.++++.....+.|.-..                                  . .|+
T Consensus       108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~----------------------------------~-~~~  152 (302)
T 3s25_A          108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY----------------------------------L-FTC  152 (302)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC----------------------------------C-CCS
T ss_pred             ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC----------------------------------c-eEe
Confidence            456677888999999   78999999998654444443211                                  1 122


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                        ..++ +.||..+.+..+|++++++++..+.+..|...                                    .|   
T Consensus       153 --~~~g-~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~------------------------------------~~---  190 (302)
T 3s25_A          153 --NTSD-RYFYYNNPKNGQLYRYDTASQSEALFYDCNCY------------------------------------KP---  190 (302)
T ss_dssp             --EEET-TEEEEECTTTCCEEEEETTTTEEEEEECSCEE------------------------------------EE---
T ss_pred             --eEEC-CEEEEEeCCCceEEEEECCCCCEEEEeCCCcc------------------------------------ce---
Confidence              3445 68999999999999999988777766532110                                    01   


Q ss_pred             ccccccccCCeEEEEeCCC-CeEEEEeCCCCeEEEee
Q 013362          162 LISSSIAFQNHILLCDIVG-QRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       162 ~~Sgla~~~~~LyIADT~n-hRIRkvdl~tG~vST~~  197 (444)
                          +...++.||.+|..+ .+|-+++++++....+.
T Consensus       191 ----~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt  223 (302)
T 3s25_A          191 ----VVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT  223 (302)
T ss_dssp             ----EEEETTEEEEEEGGGTTEEEEECSSSCCCEECS
T ss_pred             ----eeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe
Confidence                112467788887653 68888888877766653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.58  E-value=0.014  Score=62.78  Aligned_cols=84  Identities=12%  Similarity=0.070  Sum_probs=60.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|+|+.++|+|..+||++-....|-.+|+.+.... +.|.=..            .+ -..  +.       ...=..|+
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~-~~~~l~~------------~~-~v~--~~-------v~vG~gP~  334 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV-FYENADP------------RS-AVV--AE-------PELGLGPL  334 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH-HHSCCCG------------GG-GEE--EC-------CBCCSCEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc-cccccCc------------cc-ceE--EE-------cCCCCCcc
Confidence            79999999999999999999999999998654211 1221000            00 000  00       00013599


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCC
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLAS  108 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~t  108 (444)
                      +++++++|.+|++.--..+|-+||.++
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            999999999999999999999999876

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.58  E-value=0.0054  Score=61.52  Aligned_cols=84  Identities=21%  Similarity=0.248  Sum_probs=57.0

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE  156 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G  156 (444)
                      |..||+|++.++|.|||+++..++|++++..+|..+++.. .+.... .                        ...++.|
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~-~~~v~~-~------------------------g~~GllG   84 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE-VPGVSP-S------------------------GEGGLLG   84 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CTTCCC-B------------------------TTBSEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc-cCceee-c------------------------CCCCcee
Confidence            9999999999999999999989999999988888766642 221100 0                        1112223


Q ss_pred             CCcccccccccccCCeEEEEeC--CCCeEEEEeCCC
Q 013362          157 LPYAGLISSSIAFQNHILLCDI--VGQRIMRLNRES  190 (444)
Q Consensus       157 ip~a~~~Sgla~~~~~LyIADT--~nhRIRkvdl~t  190 (444)
                      +++    +.=...++.||++.+  ..+||.|+.++.
T Consensus        85 ia~----~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~  116 (347)
T 3das_A           85 IAL----SPDYASDHMVYAYFTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EEE----CTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred             eEe----ccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence            322    100013578999876  567999998876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.56  E-value=0.08  Score=52.03  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=26.9

Q ss_pred             cceeEEcCCCe-EEEEeC--CCCEEEEEECCCCcEEEeec
Q 013362           80 PWHLMKSEDDN-LLIINR--SFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADa--gnh~IrkIDl~tG~I~Tiag  116 (444)
                      ...++++++|. |+++-.  ++.+||.+|+.+|++..+.+
T Consensus       225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~  264 (415)
T 2hqs_A          225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD  264 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC
T ss_pred             ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC
Confidence            35677888876 554543  46689999999999877664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.53  E-value=0.0044  Score=62.17  Aligned_cols=76  Identities=17%  Similarity=0.068  Sum_probs=57.4

Q ss_pred             Ccce---EEEecCCCEEEEEeC-C-C------CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCcccc
Q 013362            2 RPAA---SFYHKDDDCLYIVDS-E-N------HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSE   70 (444)
Q Consensus         2 ~P~G---Ia~D~~g~~LYVADT-e-N------HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~   70 (444)
                      +|.|   ++++++++.|||+.. . .      ..+..||+.++++..-...|                            
T Consensus       262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----------------------------  313 (368)
T 1mda_H          262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----------------------------  313 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----------------------------
T ss_pred             ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----------------------------
Confidence            4666   899999999999865 2 1      24559999888653221111                            


Q ss_pred             CCCCCCCCCcceeEEcCCCe-EEEEeC-CCCEEEEEECCCCcEE
Q 013362           71 KLDPQSLIFPWHLMKSEDDN-LLIINR-SFETLWIMDLASGEIK  112 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~dG~-LYIADa-gnh~IrkIDl~tG~I~  112 (444)
                             ..||+|+++.||. +|++.. +.+.|-+||+.|+++.
T Consensus       314 -------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          314 -------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             -------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             -------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence                   1389999999875 999999 7999999999999765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.45  E-value=0.074  Score=52.28  Aligned_cols=36  Identities=8%  Similarity=0.076  Sum_probs=25.2

Q ss_pred             cceeEEcCCCe-EEEEe--CCCCEEEEEECCCCcEEEee
Q 013362           80 PWHLMKSEDDN-LLIIN--RSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        80 P~gL~~d~dG~-LYIAD--agnh~IrkIDl~tG~I~Tia  115 (444)
                      ...++++++|. |+++-  .+..+||.+|+.+|++..+.
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~  307 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT  307 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe
Confidence            34677888775 55443  24559999999998876654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.41  E-value=0.013  Score=56.83  Aligned_cols=69  Identities=12%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             cce---EEEecCCCEEEEEeC----------CCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccc
Q 013362            3 PAA---SFYHKDDDCLYIVDS----------ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKS   69 (444)
Q Consensus         3 P~G---Ia~D~~g~~LYVADT----------eNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~   69 (444)
                      |.|   ++++++++.|||+..          ..+.|..||+.++++..-...                        .   
T Consensus       253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~------------------------~---  305 (361)
T 2oiz_A          253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG------------------------R---  305 (361)
T ss_dssp             ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC------------------------T---
T ss_pred             cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec------------------------C---
Confidence            555   999999999999964          245899999988754321111                        0   


Q ss_pred             cCCCCCCCCCcceeEEcCCC-eEEEEeCCCCEEEEEECCCC
Q 013362           70 EKLDPQSLIFPWHLMKSEDD-NLLIINRSFETLWIMDLASG  109 (444)
Q Consensus        70 ~~~~~~~Ln~P~gL~~d~dG-~LYIADagnh~IrkIDl~tG  109 (444)
                             -  |++|+++++| .||+++.  +.|..||+++|
T Consensus       306 -------~--p~~ia~spdg~~l~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          306 -------D--ALSMTIDQQRNLMLTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             -------T--CCEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred             -------C--eeEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence                   2  7899999885 5888885  89999999999

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.36  E-value=0.025  Score=60.75  Aligned_cols=52  Identities=23%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             CCCCCCcceeEEcCCCeEEEEeC------------CCCEEEEEECCCCcEEEeecCCccceeecc
Q 013362           74 PQSLIFPWHLMKSEDDNLLIINR------------SFETLWIMDLASGEIKEAVKGFSKVLEICG  126 (444)
Q Consensus        74 ~~~Ln~P~gL~~d~dG~LYIADa------------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G  126 (444)
                      ...|++|=.|++++.|+|||+.=            +|+++|.+++.+|++..|+.+ +...|.||
T Consensus       472 ~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG  535 (592)
T 3zwu_A          472 QNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTG  535 (592)
T ss_dssp             TTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEE
T ss_pred             CCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcC
Confidence            34599999999999999999854            578999999999999999963 44445555

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.95  E-value=0.44  Score=48.56  Aligned_cols=87  Identities=15%  Similarity=0.095  Sum_probs=52.5

Q ss_pred             cceEEEecCCCEEEEEeCCCC--eEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            3 PAASFYHKDDDCLYIVDSENH--AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNH--aIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +..++++++|..+|+++ .+.  .|.++|+.++.+..+......             ...+.         +.    ...
T Consensus       244 ~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~-------------~~~p~---------w~----~~~  296 (662)
T 3azo_A          244 IAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAATQLCRREEE-------------FAGPL---------WT----PGM  296 (662)
T ss_dssp             EEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEEESSCCSSB-------------SSCCC---------CS----TTC
T ss_pred             EcceEECCCCeEEEEEC-CCCCeEEEEEECCCCceeeccccccc-------------ccCcc---------cc----ccC
Confidence            45678888887444444 334  788998877877766542100             00000         00    012


Q ss_pred             ceeEEcCCCeEEE-EeCCCCEEEEEECCCCcEEEeec
Q 013362           81 WHLMKSEDDNLLI-INRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        81 ~gL~~d~dG~LYI-ADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      ..+++.+++.+|+ +..+..+||.+|+.+|.++++..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  333 (662)
T 3azo_A          297 RWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAG  333 (662)
T ss_dssp             CSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCS
T ss_pred             ceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecC
Confidence            3567766566554 44477789999999898887764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.86  E-value=0.072  Score=56.12  Aligned_cols=108  Identities=14%  Similarity=0.028  Sum_probs=71.0

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCC-e
Q 013362           12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-N   90 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG-~   90 (444)
                      ++.+||+....|.|..||..++.+..-...|                                   ..|+++++++|| .
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-----------------------------------~~p~~v~~SpDGr~  210 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-----------------------------------YAVHISRLSASGRY  210 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-----------------------------------SCEEEEEECTTSCE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-----------------------------------CCccceEECCCCCE
Confidence            4589999999999999999988655322232                                   126688888886 5


Q ss_pred             EEEEeCCCCEEEEEECC--CCcE-EEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccccccccc
Q 013362           91 LLIINRSFETLWIMDLA--SGEI-KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI  167 (444)
Q Consensus        91 LYIADagnh~IrkIDl~--tG~I-~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla  167 (444)
                      ||+++. .+.|.+||+.  ++++ .++..|..                                  +.++++    |.+-
T Consensus       211 lyv~~~-dg~V~viD~~~~t~~~v~~i~~G~~----------------------------------P~~ia~----s~~~  251 (567)
T 1qks_A          211 LFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSE----------------------------------ARSIET----SKME  251 (567)
T ss_dssp             EEEEET-TSEEEEEETTSSSCCEEEEEECCSE----------------------------------EEEEEE----CCST
T ss_pred             EEEEcC-CCeEEEEECCCCCCcEeEEEecCCC----------------------------------CceeEE----cccc
Confidence            899985 6799999995  6643 33332211                                  011111    1000


Q ss_pred             -ccCCeEEEEeCCCCeEEEEeCCCCeE
Q 013362          168 -AFQNHILLCDIVGQRIMRLNRESGVC  193 (444)
Q Consensus       168 -~~~~~LyIADT~nhRIRkvdl~tG~v  193 (444)
                       .++..||++.-..+.|..+|..|..+
T Consensus       252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          252 GWEDKYAIAGAYWPPQYVIMDGETLEP  278 (567)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             CCCCCEEEEEEccCCeEEEEECCCCcE
Confidence             13567888888888888888777654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.80  E-value=0.039  Score=57.77  Aligned_cols=90  Identities=18%  Similarity=0.118  Sum_probs=59.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCC-C--eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR-R--VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t-g--~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      .|.+|+++++|..|||++.+.+.|+.+|..+ +  ++.-...+|..       +.   -..-+ ...         +.-.
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~-------~~---~~~~~-~G~---------~~~g  381 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI-------FH---RADHP-AGH---------KLTG  381 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT-------TT---CBCCT-TSC---------CCCS
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe-------ec---ccccc-ccc---------cCCC
Confidence            4899999999999999999999999999742 2  22222222211       00   00000 000         0134


Q ss_pred             CcceeEEcCCC-eEEEEe--------C-----CCCEEEEE--ECCCCcEE
Q 013362           79 FPWHLMKSEDD-NLLIIN--------R-----SFETLWIM--DLASGEIK  112 (444)
Q Consensus        79 ~P~gL~~d~dG-~LYIAD--------a-----gnh~IrkI--Dl~tG~I~  112 (444)
                      .|+++.++.|| .||+|+        .     .+.++.++  |.++| ++
T Consensus       382 gPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~  430 (462)
T 2ece_A          382 APQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LE  430 (462)
T ss_dssp             CCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EE
T ss_pred             CCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ce
Confidence            69999999886 699999        3     66777755  88889 65

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.73  E-value=0.31  Score=42.44  Aligned_cols=37  Identities=14%  Similarity=0.141  Sum_probs=25.7

Q ss_pred             cceeEEcCCCe-EEEEeC---CCCEEEEEECCCCcEEEeec
Q 013362           80 PWHLMKSEDDN-LLIINR---SFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADa---gnh~IrkIDl~tG~I~Tiag  116 (444)
                      +.+++++++|. |+++..   +..+||.+++.++.+..+..
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~  127 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK  127 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec
Confidence            45677887765 444432   47899999998888766653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.72  E-value=0.51  Score=41.02  Aligned_cols=38  Identities=8%  Similarity=0.081  Sum_probs=27.4

Q ss_pred             CcceeEEcCCCe-EEEEe--CCCCEEEEEECCCCcEEEeec
Q 013362           79 FPWHLMKSEDDN-LLIIN--RSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        79 ~P~gL~~d~dG~-LYIAD--agnh~IrkIDl~tG~I~Tiag  116 (444)
                      .+..+.++++|. |+++.  .+..+||.+++.++.+..+..
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence            346778888775 55553  567899999988888877653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.63  E-value=1.5  Score=41.32  Aligned_cols=168  Identities=12%  Similarity=0.159  Sum_probs=89.9

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362           12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL   91 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L   91 (444)
                      ++.||+++. ++.|..+|..+|.+.=-...+...       .+. ...      .          -.....+++++ +.|
T Consensus        53 ~~~v~~~~~-~g~v~a~d~~tG~~~W~~~~~~~~-------~~~-~~~------~----------~~~~~~~~~~~-~~v  106 (376)
T 3q7m_A           53 DNVVYAADR-AGLVKALNADDGKEIWSVSLAEKD-------GWF-SKE------P----------ALLSGGVTVSG-GHV  106 (376)
T ss_dssp             TTEEEEECT-TSEEEEEETTTCCEEEEEECCC----------CC-SCC------C----------CCEEEEEEEET-TEE
T ss_pred             CCEEEEEcC-CCeEEEEEccCCceeeeecCcccc-------ccc-ccc------C----------cccccCceEeC-CEE
Confidence            568999976 568999999888664222111010       000 000      0          00112334444 899


Q ss_pred             EEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccccccccCC
Q 013362           92 LIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQN  171 (444)
Q Consensus        92 YIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla~~~~  171 (444)
                      |+... ++.|..+|+.+|++..-.......                                         .+.....++
T Consensus       107 ~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~-----------------------------------------~~~p~~~~~  144 (376)
T 3q7m_A          107 YIGSE-KAQVYALNTSDGTVAWQTKVAGEA-----------------------------------------LSRPVVSDG  144 (376)
T ss_dssp             EEEET-TSEEEEEETTTCCEEEEEECSSCC-----------------------------------------CSCCEEETT
T ss_pred             EEEcC-CCEEEEEECCCCCEEEEEeCCCce-----------------------------------------EcCCEEECC
Confidence            99874 579999999999875332110000                                         011123356


Q ss_pred             eEEEEeCCCCeEEEEeCCCCeEEE-eeeccccccCCceeeeeccceeeecccccCCcccceeeeeecCCCeeeEEEeeeC
Q 013362          172 HILLCDIVGQRIMRLNRESGVCSN-FQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDI  250 (444)
Q Consensus       172 ~LyIADT~nhRIRkvdl~tG~vST-~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pGri~i~v~v~~  250 (444)
                      .||+. +.+..|..+|.++|.+.- +...+ ..+... -...|   +...+..+.++....+..++...|++.-+.....
T Consensus       145 ~v~v~-~~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~---~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~  218 (376)
T 3q7m_A          145 LVLIH-TSNGQLQALNEADGAVKWTVNLDM-PSLSLR-GESAP---TTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ  218 (376)
T ss_dssp             EEEEE-CTTSEEEEEETTTCCEEEEEECCC------C-CCCCC---EEETTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred             EEEEE-cCCCeEEEEECCCCcEEEEEeCCC-Cceeec-CCCCc---EEECCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence            77776 456789999998887542 22211 111000 00112   1223334456667789999999998887777666


Q ss_pred             CCC
Q 013362          251 PSD  253 (444)
Q Consensus       251 P~~  253 (444)
                      |.+
T Consensus       219 ~~~  221 (376)
T 3q7m_A          219 ATG  221 (376)
T ss_dssp             ---
T ss_pred             CCC
Confidence            644

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=95.62  E-value=0.28  Score=45.78  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=21.9

Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEec
Q 013362            5 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY   39 (444)
Q Consensus         5 GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVA   39 (444)
                      +.+++++|+.||++.. ++.|+.+|+.++....+.
T Consensus        85 ~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~~~~  118 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKD-GRNLMRVDLATLEENVVY  118 (388)
T ss_dssp             SCEECTTSSEEEEEET-TTEEEEEETTTCCEEEEE
T ss_pred             ceEEcCCCCEEEEEeC-CCeEEEEECCCCcceeee
Confidence            4567777777776664 356777777766655443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.40  E-value=0.22  Score=50.44  Aligned_cols=73  Identities=5%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             CCcceEEE--ecCCC--EEEEEeCCCCeEEEEEC---CCCeEEE-eccCCCcCccCCcchhhhhcccCcccccCccccCC
Q 013362            1 MRPAASFY--HKDDD--CLYIVDSENHAIRRADM---GRRVLET-VYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKL   72 (444)
Q Consensus         1 ~~P~GIa~--D~~g~--~LYVADTeNHaIRkIDl---~tg~VtT-VAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~   72 (444)
                      ..|+|+|+  ++..+  .+||.+.+ +.+..+++   .+|.++. +..+            |.   .|            
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~------------f~---lg------------  179 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRA------------FK---MN------------  179 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEE------------EE---CS------------
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEE------------ec---CC------------
Confidence            36899999  77654  47888876 77777665   2332211 1111            00   00            


Q ss_pred             CCCCCCCcceeEEcCC-CeEEEEeCCCCEEEEEECC
Q 013362           73 DPQSLIFPWHLMKSED-DNLLIINRSFETLWIMDLA  107 (444)
Q Consensus        73 ~~~~Ln~P~gL~~d~d-G~LYIADagnh~IrkIDl~  107 (444)
                           ..|-++++|++ |.|||++-.. -||+||..
T Consensus       180 -----sq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~  209 (355)
T 3amr_A          180 -----SQTEGMAADDEYGRLYIAEEDE-AIWKFSAE  209 (355)
T ss_dssp             -----SCEEEEEEETTTTEEEEEETTT-EEEEEECS
T ss_pred             -----CCcceEEEcCCCCeEEEecccc-eEEEEeCC
Confidence                 13678889865 8999999985 59999954

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.32  E-value=0.25  Score=50.97  Aligned_cols=75  Identities=17%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCC---eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRR---VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg---~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      ...++++++|+.|+++..  +.|+.+|+.++   .+..+.+.+                                   ..
T Consensus       111 v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~-----------------------------------~~  153 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGE-----------------------------------GF  153 (741)
T ss_dssp             SCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCSS-----------------------------------SC
T ss_pred             cceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccCC-----------------------------------cc
Confidence            357899999998888876  88999998766   443332210                                   12


Q ss_pred             cceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeec
Q 013362           80 PWHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      +..+++++||. |+.+.  +++||.+|+.+|+...+..
T Consensus       154 ~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          154 ATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             EEEEEECTTSSEEEEEE--TTEEEEEETTTTEEEECCC
T ss_pred             cccccCCCCCCEEEEEe--CCcEEEEecCCCCEEEecc
Confidence            45677888876 44433  4589999999998877653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.29  E-value=0.24  Score=50.44  Aligned_cols=79  Identities=11%  Similarity=0.055  Sum_probs=53.3

Q ss_pred             ceEEEecCCCEEEEEeCC-------CCeEEEEECC-CC---eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCC
Q 013362            4 AASFYHKDDDCLYIVDSE-------NHAIRRADMG-RR---VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKL   72 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTe-------NHaIRkIDl~-tg---~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~   72 (444)
                      .+++++++|..|+++...       +..|+.+|+. +|   ....+.+..                              
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~------------------------------  240 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP------------------------------  240 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET------------------------------
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC------------------------------
Confidence            457899999988776533       2579999987 56   555554321                              


Q ss_pred             CCCCCCCcceeEEcCCCeEEEEeCCCC--EEEEEECCCCcEEEeec
Q 013362           73 DPQSLIFPWHLMKSEDDNLLIINRSFE--TLWIMDLASGEIKEAVK  116 (444)
Q Consensus        73 ~~~~Ln~P~gL~~d~dG~LYIADagnh--~IrkIDl~tG~I~Tiag  116 (444)
                          -..+..+.+++||.||++-...+  +||++|+.+|+...+..
T Consensus       241 ----~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~  282 (662)
T 3azo_A          241 ----EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR  282 (662)
T ss_dssp             ----TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred             ----CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence                01134566777777766654444  99999998998887764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.24  E-value=0.48  Score=48.67  Aligned_cols=85  Identities=14%  Similarity=0.264  Sum_probs=53.7

Q ss_pred             cceEEEecCCCEEEEEeCCC----CeEEEEECCCC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSEN----HAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeN----HaIRkIDl~tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      +..++++++|+.||++....    ..|+.+|+.+| .+.++......        .|                      .
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~--------~~----------------------~  309 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK--------HY----------------------V  309 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS--------SC----------------------C
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC--------Ce----------------------E
Confidence            35688999998888854322    48999999888 77766532111        00                      1


Q ss_pred             CCcceeEEcC--CCeE-EEEeC-CCCEEEEEECCCCcEEEeecC
Q 013362           78 IFPWHLMKSE--DDNL-LIINR-SFETLWIMDLASGEIKEAVKG  117 (444)
Q Consensus        78 n~P~gL~~d~--dG~L-YIADa-gnh~IrkIDl~tG~I~TiagG  117 (444)
                      .....+++++  +|.+ |.++. +..+||.+|+.++.+.++..|
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~  353 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG  353 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred             CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence            1123456666  6664 44433 457899999877778777653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.16  E-value=0.26  Score=50.89  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCC-----eEEEEECCCCeEEEec-cCCCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENH-----AIRRADMGRRVLETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNH-----aIRkIDl~tg~VtTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      .+..++++++|..|+++.....     .|+.+|+.+|....+. +.+.. + .++.+.   ..... ...+        .
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~-~~~~~~---~~~~~-~~~~--------~  103 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-P-GTETLS---DEEKA-RRER--------Q  103 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------------
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-c-cccccc---chhhh-hhhh--------h
Confidence            3678999999999998877334     8999999988765444 32111 0 000000   00000 0000        0


Q ss_pred             CC---CCcceeEEcCCCe-EEEEeCCCCEEEEEECCCC---cEEEeec
Q 013362           76 SL---IFPWHLMKSEDDN-LLIINRSFETLWIMDLASG---EIKEAVK  116 (444)
Q Consensus        76 ~L---n~P~gL~~d~dG~-LYIADagnh~IrkIDl~tG---~I~Tiag  116 (444)
                      .+   .....+++++||. |+++..  ++||.+|+.+|   .+..+..
T Consensus       104 ~~~~~~~v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~  149 (741)
T 2ecf_A          104 RIAAMTGIVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTH  149 (741)
T ss_dssp             ---CCEESCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCC
T ss_pred             hhccccCcceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEccc
Confidence            01   1246788998876 555554  89999999988   6665553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.09  E-value=0.86  Score=40.78  Aligned_cols=36  Identities=6%  Similarity=0.030  Sum_probs=28.0

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      +..+++++++.++++-..+++|+.+|+.++.+..+.
T Consensus       227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence            456778888777777777889999999988776544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.02  E-value=0.67  Score=43.81  Aligned_cols=72  Identities=10%  Similarity=0.237  Sum_probs=47.1

Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      ..+.+++ +.||+++. .+.|+.+|+.+|++..-......                                        
T Consensus       271 ~~~~~~~-~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~~----------------------------------------  308 (376)
T 3q7m_A          271 NDFIVDG-NRIYLVDQ-NDRVMALTIDGGVTLWTQSDLLH----------------------------------------  308 (376)
T ss_dssp             EEEEEET-TEEEEEET-TCCEEEEETTTCCEEEEECTTTT----------------------------------------
T ss_pred             CCceEEC-CEEEEEcC-CCeEEEEECCCCcEEEeecccCC----------------------------------------
Confidence            3455554 89999985 56899999999987532210000                                        


Q ss_pred             cccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                      ...++....++.||+++. +..|..+|+++|.+.-
T Consensus       309 ~~~~~~~~~~~~l~v~~~-~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          309 RLLTSPVLYNGNLVVGDS-EGYLHWINVEDGRFVA  342 (376)
T ss_dssp             SCCCCCEEETTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred             CcccCCEEECCEEEEEeC-CCeEEEEECCCCcEEE
Confidence            001122335788999975 5689999999998643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.94  E-value=0.11  Score=54.44  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=56.7

Q ss_pred             cCCCEEEEEeCCCCeEEEEECCCC-----eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeE
Q 013362           10 KDDDCLYIVDSENHAIRRADMGRR-----VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLM   84 (444)
Q Consensus        10 ~~g~~LYVADTeNHaIRkIDl~tg-----~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~   84 (444)
                      .+++.|||.--..++|..||..+.     .+.||-+.- .          . .+      +.          +..|.++.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~-~----------~-~~------~g----------~s~Ph~~~  144 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE-V----------K-KV------SG----------YSRLHTVH  144 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH-H----------H-HH------HC----------EEEEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh-c----------c-cc------cC----------CCccccee
Confidence            577899999999999999998644     555553220 0          0 01      11          45699999


Q ss_pred             EcCCCeEEEEeCCC------CEEEEEECCCCcEEE
Q 013362           85 KSEDDNLLIINRSF------ETLWIMDLASGEIKE  113 (444)
Q Consensus        85 ~d~dG~LYIADagn------h~IrkIDl~tG~I~T  113 (444)
                      +.++| |||+..++      +.|..+|.+|+++..
T Consensus       145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~  178 (462)
T 2ece_A          145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG  178 (462)
T ss_dssp             ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred             ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence            99988 99999998      899999999988653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.81  E-value=2.8  Score=39.69  Aligned_cols=124  Identities=15%  Similarity=0.088  Sum_probs=67.6

Q ss_pred             cceeEEcCCCeEEEEe---CCCCEEEEEECCCCcE--EEee-cCCccceeecceehhhhhhhhhcCCccccccccccccc
Q 013362           80 PWHLMKSEDDNLLIIN---RSFETLWIMDLASGEI--KEAV-KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS  153 (444)
Q Consensus        80 P~gL~~d~dG~LYIAD---agnh~IrkIDl~tG~I--~Tia-gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~  153 (444)
                      +..+++.++|.++++-   ...++|+.+|+.++..  .... .....+.                               
T Consensus       223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-------------------------------  271 (402)
T 2aq5_A          223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL-------------------------------  271 (402)
T ss_dssp             CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE-------------------------------
T ss_pred             ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee-------------------------------
Confidence            4567788888877776   6889999999987642  1111 0000000                               


Q ss_pred             ccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCe--EEEee-eccccccCCceeeee-ccceeeecccccCCccc
Q 013362          154 LKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGV--CSNFQ-FSNFAILGLPYWFAF-PLERVYAVAGGHQGSWT  229 (444)
Q Consensus       154 ~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~--vST~~-fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~  229 (444)
                        .+       .+...++.||++-...+.|+.+++.++.  +..+. +...+   ....+.+ |-..      . .-...
T Consensus       272 --~~-------~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~---~v~~~~~sp~~~------~-~~s~~  332 (402)
T 2aq5_A          272 --LP-------FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKE---SQRGMGYMPKRG------L-EVNKC  332 (402)
T ss_dssp             --EE-------EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSS---CCSEEEECCGGG------S-CGGGT
T ss_pred             --EE-------EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCC---cccceEEecccc------c-ceecc
Confidence              00       0123456788888888899999999887  55543 22111   1111111 2111      1 11223


Q ss_pred             ceeeeeecCCCeeeEEEeeeCCCCc
Q 013362          230 DHIQRCSLLPGRIDIKVNVDIPSDT  254 (444)
Q Consensus       230 ~~i~~v~~~pGri~i~v~v~~P~~~  254 (444)
                      +.++-+++.++++. .+...+|...
T Consensus       333 ~~~~~~~l~~~~~~-~i~~~~pr~~  356 (402)
T 2aq5_A          333 EIARFYKLHERKCE-PIAMTVPRKS  356 (402)
T ss_dssp             EEEEEEEEETTEEE-EEEEECCCCC
T ss_pred             eeEEEEEcCCCcEE-EEEEEcccch
Confidence            45666677777665 4455666654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.49  E-value=2.1  Score=38.16  Aligned_cols=35  Identities=20%  Similarity=0.076  Sum_probs=27.1

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEe
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      ...+++++++.++++-...+.|+.+|+.++.....
T Consensus       186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  220 (337)
T 1gxr_A          186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEEEEecCCcEEEEECCCCceEee
Confidence            46778888777777777889999999998865433

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=94.06  E-value=0.39  Score=48.91  Aligned_cols=95  Identities=7%  Similarity=0.077  Sum_probs=61.8

Q ss_pred             CCCCCcceeEEcCCCeEEEEeCCC---------------CEEEEEECCCC--c-EEEeecCCccceeecceehhhhhhhh
Q 013362           75 QSLIFPWHLMKSEDDNLLIINRSF---------------ETLWIMDLASG--E-IKEAVKGFSKVLEICGVLVMEKVFLL  136 (444)
Q Consensus        75 ~~Ln~P~gL~~d~dG~LYIADagn---------------h~IrkIDl~tG--~-I~TiagG~~~~~~~~G~li~~~~a~l  136 (444)
                      ..|.+..++.+|..|.|||-|+|.               -+|..+|+.|+  + |+++.  .+...-.            
T Consensus        84 ~~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~--~p~~~~~------------  149 (381)
T 3q6k_A           84 KELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYY--FPTRLVE------------  149 (381)
T ss_dssp             CSSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEE--CCGGGCC------------
T ss_pred             cceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEE--CCHHhcc------------
Confidence            349999999999999999999982               27999999998  4 55554  2211000            


Q ss_pred             hcCCcccccccccccccccCCCcc-cccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362          137 KQMPQDWLLHQIDSSCSLKELPYA-GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Gip~a-~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~  197 (444)
                         +..+++          .+..- ..+.+ .-.++.+||+|+....|..+|+++|..-.+.
T Consensus       150 ---~~S~l~----------di~VD~~~~~~-~c~~~~aYItD~~~~gLIVydl~~~~swRv~  197 (381)
T 3q6k_A          150 ---KPTYFG----------GFAVDVANPKG-DCSETFVYITNFLRGALFIYDHKKQDSWNVT  197 (381)
T ss_dssp             ---CGGGEE----------EEEEEESCTTT-TSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ---cCCccc----------eEEEecccCCC-CCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence               000000          00000 00000 0015689999999999999999999988874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.01  E-value=2.7  Score=37.91  Aligned_cols=77  Identities=12%  Similarity=0.075  Sum_probs=53.8

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      -..+++++++..|+.+. .++.|+..|+.++. +.++.+..                                   ...+
T Consensus        35 v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~-----------------------------------~~v~   78 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCS-KDSSASVWYSLNGERLGTLDGHT-----------------------------------GTIW   78 (369)
T ss_dssp             EEEEEECTTSCEEEEEE-SSSCEEEEETTTCCEEEEECCCS-----------------------------------SCEE
T ss_pred             EEEEEEcCCCCEEEEEe-CCCEEEEEeCCCchhhhhhhhcC-----------------------------------CcEE
Confidence            35789999987666665 56789999987764 33343221                                   1124


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      .+++++++.++++-...+.|+.+|+.+++.....
T Consensus        79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  112 (369)
T 3zwl_B           79 SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW  112 (369)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            6777777777777778899999999988765444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=93.95  E-value=0.96  Score=46.46  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=26.0

Q ss_pred             cceeEEcCCCe-EEEEeCCC----CEEEEEECCCC-cEEEee
Q 013362           80 PWHLMKSEDDN-LLIINRSF----ETLWIMDLASG-EIKEAV  115 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagn----h~IrkIDl~tG-~I~Tia  115 (444)
                      +..+++++||. |+++....    .+|+.+|+.+| .+.++.
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE
Confidence            56788888876 66643221    48999999999 777665

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=93.57  E-value=4.9  Score=39.44  Aligned_cols=78  Identities=13%  Similarity=0.005  Sum_probs=49.5

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..+++++++..++++-+.++.|+..|+.++.. .++.+....                                -...+.
T Consensus       164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~--------------------------------~~~v~~  211 (615)
T 1pgu_A          164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ--------------------------------GSFVRD  211 (615)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT--------------------------------TCCEEE
T ss_pred             EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC--------------------------------CceEEE
Confidence            45677777654555556667777777766543 233221100                                002357


Q ss_pred             eEEcCC-CeEEEEeCCCCEEEEEECCCCcEEE
Q 013362           83 LMKSED-DNLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        83 L~~d~d-G~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      +++.++ |.++++-...+.|+.+|+.+|+...
T Consensus       212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  243 (615)
T 1pgu_A          212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLK  243 (615)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence            788888 8877777778999999999887543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.57  E-value=1  Score=47.85  Aligned_cols=79  Identities=8%  Similarity=0.026  Sum_probs=52.8

Q ss_pred             CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      ....|..+.+|.|||+-. ++-|.++|+.++.++.+..  ..                                   |+|
T Consensus       540 ~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~--~~-----------------------------------gl~  581 (781)
T 3v9f_A          540 TINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQR--KE-----------------------------------GLP  581 (781)
T ss_dssp             CEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECG--GG-----------------------------------TCS
T ss_pred             eeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccc--cC-----------------------------------CCC
Confidence            456888888899999987 4333999999887765531  10                                   222


Q ss_pred             ccccccccc-ccCCeEEEEeCCCCeEEEEeCCCCeEEEeee
Q 013362          159 YAGLISSSI-AFQNHILLCDIVGQRIMRLNRESGVCSNFQF  198 (444)
Q Consensus       159 ~a~~~Sgla-~~~~~LyIADT~nhRIRkvdl~tG~vST~~f  198 (444)
                      ... +.++. ..++.|||+-  ++-|.+++++++.+..+..
T Consensus       582 ~~~-i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~~  619 (781)
T 3v9f_A          582 NTH-IRAISEDKNGNIWAST--NTGISCYITSKKCFYTYDH  619 (781)
T ss_dssp             CCC-CCEEEECSSSCEEEEC--SSCEEEEETTTTEEEEECG
T ss_pred             Cce-EEEEEECCCCCEEEEc--CCceEEEECCCCceEEecc
Confidence            111 22322 3477899994  3449999999998888753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=93.43  E-value=1.9  Score=39.04  Aligned_cols=34  Identities=15%  Similarity=0.026  Sum_probs=22.9

Q ss_pred             CCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           78 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      +....++++.+|.|||+.. ++.|.++|.....+.
T Consensus       215 ~~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~  248 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKW  248 (330)
T ss_dssp             CCCSCCEECTTSCEEEEET-TTEEEEECTTSCEEE
T ss_pred             cceeceEECCCCeEEEEcC-CCeEEEECCCCCEeE
Confidence            3456777887788988875 457888876433333

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=93.40  E-value=0.36  Score=48.67  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=25.8

Q ss_pred             ceeEEcCCCeEEE--E-eCCC-CEEEEEECCCCcEEEeec
Q 013362           81 WHLMKSEDDNLLI--I-NRSF-ETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        81 ~gL~~d~dG~LYI--A-Dagn-h~IrkIDl~tG~I~Tiag  116 (444)
                      +.+++++||...+  + |.++ ..||++|+.+|+++++.+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~  192 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS  192 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec
Confidence            6777888876544  2 2222 789999999999887764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=93.27  E-value=3.4  Score=40.64  Aligned_cols=37  Identities=8%  Similarity=-0.028  Sum_probs=27.6

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      ...++++++|.++++-.....|+.+|.....+.++.+
T Consensus       470 v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~  506 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG  506 (577)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC
Confidence            4578888888888877788899999975445555543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.19  E-value=4.5  Score=36.43  Aligned_cols=78  Identities=8%  Similarity=0.071  Sum_probs=53.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCC-C-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR-R-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t-g-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      ....+++++++..|+++. .++.|+..|+.+ + .+.++.+.                                   -..
T Consensus       177 ~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----------------------------------~~~  220 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLH-----------------------------------EKS  220 (369)
T ss_dssp             CEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEECC-----------------------------------SSC
T ss_pred             ceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEecC-----------------------------------CCc
Confidence            356788988887777665 468999999876 3 23333221                                   111


Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      ...+++++++.++++-...+.|+.+|+.++......
T Consensus       221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            346777777877777778889999999988765444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=93.19  E-value=1.1  Score=41.63  Aligned_cols=34  Identities=15%  Similarity=0.081  Sum_probs=24.4

Q ss_pred             eeEEcCCCe-E-EEEeCCCC---EEEEEECCCCcEEEee
Q 013362           82 HLMKSEDDN-L-LIINRSFE---TLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG~-L-YIADagnh---~IrkIDl~tG~I~Tia  115 (444)
                      .+++++||. | |+++....   +|+++|+.+|+.+.+.
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~  280 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLT  280 (388)
T ss_dssp             EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEE
T ss_pred             cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEE
Confidence            456777765 5 66765433   4999999999987765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=93.09  E-value=0.75  Score=44.72  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=25.2

Q ss_pred             cceeEEcCC---CeEEEEeCCCCEEEEEECCCCcE
Q 013362           80 PWHLMKSED---DNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        80 P~gL~~d~d---G~LYIADagnh~IrkIDl~tG~I  111 (444)
                      .+.|+++++   +.++++-...++|+.||+.++..
T Consensus       198 v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          198 LTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             eEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            467888887   77777767788999999988763

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.97  E-value=1.7  Score=40.12  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=15.9

Q ss_pred             CCCEEEEEECCCCcEEEeec
Q 013362           97 SFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        97 gnh~IrkIDl~tG~I~Tiag  116 (444)
                      +...|+++|+.+|.+..+..
T Consensus       318 ~~~~i~~~d~~~~~~~~l~~  337 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSAQKLCK  337 (396)
T ss_dssp             CCCEEEEEETTTTBCCEEEE
T ss_pred             CCCcEEEEecccCceEEccC
Confidence            56789999999988766653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=92.94  E-value=1  Score=43.69  Aligned_cols=79  Identities=11%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      .+|+|+|.+..++++=+..+.||..|+.++.+.++......                                -..-..+
T Consensus       168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------------------------------~~~~~~~  215 (435)
T 4e54_B          168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI--------------------------------NIWFCSL  215 (435)
T ss_dssp             CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC--------------------------------SCCCCCE
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC--------------------------------CccEEEE
Confidence            45777764323444445667788888777766666543211                                0112356


Q ss_pred             EEcCCCeEEEEeCCCCEEEEEECCCCcEEEe
Q 013362           84 MKSEDDNLLIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        84 ~~d~dG~LYIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      .+++++.++++-...+.|+.+|+.+..+.++
T Consensus       216 ~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~  246 (435)
T 4e54_B          216 DVSASSRMVVTGDNVGNVILLNMDGKELWNL  246 (435)
T ss_dssp             EEETTTTEEEEECSSSBEEEEESSSCBCCCS
T ss_pred             EECCCCCEEEEEeCCCcEeeeccCcceeEEE
Confidence            6777788888888889999999876555444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=92.94  E-value=3.1  Score=37.54  Aligned_cols=78  Identities=12%  Similarity=0.038  Sum_probs=52.0

Q ss_pred             ceEEEecCC--CEEEEEeCCCCeEEEEECCC-CeE--EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            4 AASFYHKDD--DCLYIVDSENHAIRRADMGR-RVL--ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         4 ~GIa~D~~g--~~LYVADTeNHaIRkIDl~t-g~V--tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      ..+++++++  +.+.++=+.++.||..|+.+ +..  .++.+..                                   .
T Consensus        43 ~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-----------------------------------~   87 (368)
T 3mmy_A           43 GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT-----------------------------------G   87 (368)
T ss_dssp             EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS-----------------------------------S
T ss_pred             EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc-----------------------------------C
Confidence            578888884  23444445678899999875 322  3333221                                   1


Q ss_pred             CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362           79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      ....+++.+++.++++-...+.|+.+|+.++.+..+.+
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  125 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ  125 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc
Confidence            12467787777777777788999999999998766543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=92.86  E-value=2  Score=45.62  Aligned_cols=77  Identities=16%  Similarity=0.252  Sum_probs=53.8

Q ss_pred             CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      ....|..+.+|.|||+-.+  -|.++|+.++.++.+..  ..                                   |+|
T Consensus       544 ~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~~~~~~~--~~-----------------------------------gl~  584 (795)
T 4a2l_A          544 FTNCIYEASNGIIWVGTRE--GFYCFNEKDKQIKRYNT--TN-----------------------------------GLP  584 (795)
T ss_dssp             CEEEEEECTTSCEEEEESS--CEEEEETTTTEEEEECG--GG-----------------------------------TCS
T ss_pred             eeEEEEECCCCCEEEEeCC--CceeECCCCCcEEEeCC--CC-----------------------------------CCc
Confidence            4567888888999999875  79999999888776531  00                                   222


Q ss_pred             ccccccccc-ccCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362          159 YAGLISSSI-AFQNHILLCDIVGQRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       159 ~a~~~Sgla-~~~~~LyIADT~nhRIRkvdl~tG~vST~~  197 (444)
                      .. .+.++. ..++.|||+-  ++-|.+++++++.+.++.
T Consensus       585 ~~-~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~~~~  621 (795)
T 4a2l_A          585 NN-VVYGILEDSFGRLWLST--NRGISCFNPETEKFRNFT  621 (795)
T ss_dssp             CS-CEEEEEECTTSCEEEEE--TTEEEEEETTTTEEEEEC
T ss_pred             hh-heEEEEECCCCCEEEEc--CCceEEEcCCCCcEEEcC
Confidence            11 122332 3467899986  467999999999888775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.82  E-value=4.2  Score=37.52  Aligned_cols=36  Identities=11%  Similarity=0.090  Sum_probs=24.7

Q ss_pred             cceeEEcCCCe-EEEE-e-CCCCE--EEEEECCCCcEEEee
Q 013362           80 PWHLMKSEDDN-LLII-N-RSFET--LWIMDLASGEIKEAV  115 (444)
Q Consensus        80 P~gL~~d~dG~-LYIA-D-agnh~--IrkIDl~tG~I~Tia  115 (444)
                      +..++++++|. |+++ . .+..+  |+++|+.+|.+..+.
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~  280 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM  280 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence            44567888765 4444 3 34445  999999999887665

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.67  E-value=2  Score=39.92  Aligned_cols=88  Identities=11%  Similarity=0.028  Sum_probs=54.3

Q ss_pred             cceEEEecCCCEEEEEeCCC--CeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSEN--HAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeN--HaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      ...+++++++..|+++...+  +.|+..|+.++. +.++.+....   ....   .   .+.   +.          -..
T Consensus       236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~---~~~~---~---~~~---~~----------~~~  293 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS---SQAS---L---GEF---AH----------SSW  293 (397)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------CCB---SB----------SSC
T ss_pred             cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc---cccc---c---ccc---cc----------CCc
Confidence            45788888887666655432  789999987664 4555442111   0000   0   000   00          123


Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ...+++++++.++++-...++|+.||+.+++..
T Consensus       294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (397)
T 1sq9_A          294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  326 (397)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence            467888888888888888999999999988653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.60  E-value=3.6  Score=38.30  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=49.6

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      .++++++.+..++++=+.++.||..|+.++.+.++.+....                                -.....+
T Consensus       122 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------------~~~v~~~  169 (383)
T 3ei3_B          122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSW--------------------------------DYWYCCV  169 (383)
T ss_dssp             EEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCS--------------------------------SCCEEEE
T ss_pred             eEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCC--------------------------------CCCeEEE
Confidence            45667663223333334567777777776666665543211                                1223577


Q ss_pred             EEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           84 MKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        84 ~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      ++.+++.++++-...+.|+.+|+....+.++.
T Consensus       170 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  201 (383)
T 3ei3_B          170 DVSVSRQMLATGDSTGRLLLLGLDGHEIFKEK  201 (383)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred             EECCCCCEEEEECCCCCEEEEECCCCEEEEec
Confidence            78888777777778899999999655555554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.60  E-value=3  Score=39.78  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=24.8

Q ss_pred             cceeEEcCC-CeEEEEeCCCCEEEEEECCCCc-EEEee
Q 013362           80 PWHLMKSED-DNLLIINRSFETLWIMDLASGE-IKEAV  115 (444)
Q Consensus        80 P~gL~~d~d-G~LYIADagnh~IrkIDl~tG~-I~Tia  115 (444)
                      +..+++.++ +.++++-..++.|+.+|+.+++ +.++.
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~  254 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA  254 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence            456777764 5677777788999999998875 34443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=92.51  E-value=4.5  Score=39.82  Aligned_cols=37  Identities=11%  Similarity=0.143  Sum_probs=29.3

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      .+++++.+++.++++-...+.|+.+|+.+..+.++.+
T Consensus       306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~  342 (577)
T 2ymu_A          306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTG  342 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECC
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeC
Confidence            4678888888887877788899999988777776653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=92.46  E-value=1.4  Score=46.80  Aligned_cols=80  Identities=9%  Similarity=-0.030  Sum_probs=53.6

Q ss_pred             CCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           78 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      +.+..++.+.+|.|||+-.++. |.++|+.++.++.+..  ..                                   ++
T Consensus       495 ~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~--~~-----------------------------------~l  536 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQ--YE-----------------------------------GF  536 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECT--TT-----------------------------------TC
T ss_pred             ceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccC--CC-----------------------------------CC
Confidence            4577899999999999987544 8889999888776642  10                                   11


Q ss_pred             Cccccccccc-ccCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362          158 PYAGLISSSI-AFQNHILLCDIVGQRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       158 p~a~~~Sgla-~~~~~LyIADT~nhRIRkvdl~tG~vST~~  197 (444)
                      |. ..+.++. ..++.|||+-. +.-|.++|.+++.+..+.
T Consensus       537 ~~-~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~  575 (781)
T 3v9f_A          537 CS-NTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQ  575 (781)
T ss_dssp             SC-SCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEEC
T ss_pred             CC-CeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEcc
Confidence            11 0122222 34678999865 443388999988877764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=92.45  E-value=1.1  Score=48.40  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=23.2

Q ss_pred             CCCEEEEEeCCCCeEEEEECCCCeEE
Q 013362           11 DDDCLYIVDSENHAIRRADMGRRVLE   36 (444)
Q Consensus        11 ~g~~LYVADTeNHaIRkIDl~tg~Vt   36 (444)
                      +|..|||+|..|++|.+||+.+.++.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~  125 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCD  125 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEe
Confidence            57799999999999999999997643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=92.30  E-value=0.98  Score=45.50  Aligned_cols=74  Identities=9%  Similarity=-0.011  Sum_probs=48.8

Q ss_pred             ceEEEecCCCEEEEEe--CCC-CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            4 AASFYHKDDDCLYIVD--SEN-HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         4 ~GIa~D~~g~~LYVAD--TeN-HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      ..++++++|..|+.+-  .+| ..|+.+|+.+|.+.++.+....                                   .
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~-----------------------------------~  197 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGS-----------------------------------F  197 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCE-----------------------------------E
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCc-----------------------------------c
Confidence            3567788888777442  223 5688888888877776433100                                   1


Q ss_pred             ceeEEcCCCe-EEEEeCCC-CEEEEEECCCCcEE
Q 013362           81 WHLMKSEDDN-LLIINRSF-ETLWIMDLASGEIK  112 (444)
Q Consensus        81 ~gL~~d~dG~-LYIADagn-h~IrkIDl~tG~I~  112 (444)
                      ..+++++||. ||.++... .+|+++|+++|+..
T Consensus       198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          198 SSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            3566777775 55444433 48999999999987

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.29  E-value=3.6  Score=39.31  Aligned_cols=74  Identities=19%  Similarity=0.162  Sum_probs=53.0

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEE-EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~Vt-TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..++|++++..|+.+ +..+.||..|+.++.+. ++.|..                                   ..-+.
T Consensus       127 ~~v~~s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~-----------------------------------~~v~~  170 (393)
T 1erj_A          127 RSVCFSPDGKFLATG-AEDRLIRIWDIENRKIVMILQGHE-----------------------------------QDIYS  170 (393)
T ss_dssp             EEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCS-----------------------------------SCEEE
T ss_pred             EEEEECCCCCEEEEE-cCCCeEEEEECCCCcEEEEEccCC-----------------------------------CCEEE
Confidence            468999998765555 46789999999887543 333221                                   01246


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEEE
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      +++.++|..+++-...++|+.||+.+|....
T Consensus       171 ~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          171 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence            7777778878888889999999999987543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.28  E-value=0.76  Score=46.56  Aligned_cols=72  Identities=15%  Similarity=0.064  Sum_probs=53.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC-----CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG-----RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS   76 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-----tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~   76 (444)
                      +|.|+++|+..+.|||++-. ..|.+++..     ++++--..+.+.                                 
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~---------------------------------  226 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRH---------------------------------  226 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSS---------------------------------
T ss_pred             CcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCc---------------------------------
Confidence            58899999888899999987 669999954     233332322211                                 


Q ss_pred             CC-CcceeEEc--CC--CeEEEEeCCCCEEEEEECC
Q 013362           77 LI-FPWHLMKS--ED--DNLLIINRSFETLWIMDLA  107 (444)
Q Consensus        77 Ln-~P~gL~~d--~d--G~LYIADagnh~IrkIDl~  107 (444)
                      |. .|.||++.  .+  |.|++++.++++.-.+|..
T Consensus       227 l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          227 LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            22 46788874  22  5699999999999999996

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=92.25  E-value=0.39  Score=48.86  Aligned_cols=62  Identities=11%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEECCC-----CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            5 ASFYHKDDDCLYIVDSENHAIRRADMGR-----RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         5 GIa~D~~g~~LYVADTeNHaIRkIDl~t-----g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      |+++|+..+.||+++.++++|.+.+..+     +.+.+|+=.                                + +|..
T Consensus       279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d--------------------------------~-~l~~  325 (381)
T 3q6k_A          279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS--------------------------------S-RFVF  325 (381)
T ss_dssp             EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC--------------------------------T-TCCS
T ss_pred             eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC--------------------------------C-Cccc
Confidence            5788744458999999999999999765     345555422                                1 2999


Q ss_pred             cceeEEcCCCeEEEEeCCCC
Q 013362           80 PWHLMKSEDDNLLIINRSFE   99 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh   99 (444)
                      |-++.++.+|.||+.-..-+
T Consensus       326 pd~~~i~~~g~Lwv~sn~l~  345 (381)
T 3q6k_A          326 GTDISVDSKGGLWFMSNGFP  345 (381)
T ss_dssp             EEEEEECTTSCEEEEECSCC
T ss_pred             cCeEEECCCCeEEEEECcch
Confidence            99999998899999876544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=92.12  E-value=5  Score=37.44  Aligned_cols=74  Identities=19%  Similarity=0.136  Sum_probs=48.4

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..+++++++..|..+ +.++.||..|+.++.. .++.|..                                   .....
T Consensus       168 ~~~~~spdg~~lasg-~~dg~i~iwd~~~~~~~~~~~~h~-----------------------------------~~v~~  211 (321)
T 3ow8_A          168 LSIAYSPDGKYLASG-AIDGIINIFDIATGKLLHTLEGHA-----------------------------------MPIRS  211 (321)
T ss_dssp             EEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCS-----------------------------------SCCCE
T ss_pred             EEEEECCCCCEEEEE-cCCCeEEEEECCCCcEEEEEcccC-----------------------------------CceeE
Confidence            456777777644444 3456777777766643 3332210                                   11246


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEEE
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      +++++++.++++=...+.|+.+|+.++....
T Consensus       212 l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~  242 (321)
T 3ow8_A          212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAG  242 (321)
T ss_dssp             EEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence            7888888888888888999999998876543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=91.61  E-value=3.4  Score=40.05  Aligned_cols=76  Identities=18%  Similarity=0.159  Sum_probs=52.2

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECC--CC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMG--RR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      ..++++++++..||++-+.++.|+..|+.  ++ .+.++.+.+.                                 -..
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------------------------------~~~  151 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF---------------------------------SKR  151 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC---------------------------------SSC
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC---------------------------------CCC
Confidence            46899999998887777788999999986  44 3333332110                                 123


Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      +..++++++|.++++-.....|+.+++.++..
T Consensus       152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~  183 (450)
T 2vdu_B          152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPE  183 (450)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred             ceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence            56788888776444444588899999887654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=91.55  E-value=4.6  Score=44.35  Aligned_cols=75  Identities=15%  Similarity=0.029  Sum_probs=49.3

Q ss_pred             cceEEEe-cCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYH-KDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D-~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +.+++++ ++|..|+++.  ...|+.+++.++.+..+.+....                                  .++
T Consensus       298 v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~----------------------------------~~~  341 (1045)
T 1k32_A          298 KFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRI----------------------------------RYV  341 (1045)
T ss_dssp             GGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCE----------------------------------EEE
T ss_pred             cceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcc----------------------------------eEE
Confidence            5789999 9998777766  57888888877766655332110                                  123


Q ss_pred             eeEEcCCCe-EEEEeCCCCEEE-EEECCCCcEEEee
Q 013362           82 HLMKSEDDN-LLIINRSFETLW-IMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG~-LYIADagnh~Ir-kIDl~tG~I~Tia  115 (444)
                      +++++ +|. |+.+.. ..+|| .+|+.++.+..+.
T Consensus       342 ~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~  375 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFE  375 (1045)
T ss_dssp             EECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECC
T ss_pred             eeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEec
Confidence            44445 443 444333 67999 9999988887766

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=91.42  E-value=2.2  Score=39.07  Aligned_cols=33  Identities=12%  Similarity=0.247  Sum_probs=20.8

Q ss_pred             eeEEcCCCeEEEEeCC--------CCEEEEEECCCCcEEEeec
Q 013362           82 HLMKSEDDNLLIINRS--------FETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        82 gL~~d~dG~LYIADag--------nh~IrkIDl~tG~I~Tiag  116 (444)
                      .+.++++|-+|++...        ..+||.+|  +|+++.+..
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  215 (347)
T 2gop_A          175 SGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE  215 (347)
T ss_dssp             EEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE
T ss_pred             cccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc
Confidence            4455666644444332        45899999  788777764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=91.28  E-value=2.1  Score=39.08  Aligned_cols=73  Identities=12%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCC---eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRR---VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg---~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      ..++++++++.|+++ +.++.|+..|+.++   .+.++.+..                                   ...
T Consensus        12 ~~~~~s~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~h~-----------------------------------~~v   55 (372)
T 1k8k_C           12 SCHAWNKDRTQIAIC-PNNHEVHIYEKSGNKWVQVHELKEHN-----------------------------------GQV   55 (372)
T ss_dssp             CEEEECTTSSEEEEE-CSSSEEEEEEEETTEEEEEEEEECCS-----------------------------------SCE
T ss_pred             EEEEECCCCCEEEEE-eCCCEEEEEeCCCCcEEeeeeecCCC-----------------------------------Ccc
Confidence            578999998766655 45789999999888   455554321                                   112


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ..+++.+++.++++-...+.|+.+|+.++...
T Consensus        56 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   87 (372)
T 1k8k_C           56 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   87 (372)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             cEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence            46777777777776667889999999888643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=91.16  E-value=4.1  Score=36.75  Aligned_cols=75  Identities=9%  Similarity=-0.089  Sum_probs=49.8

Q ss_pred             cceEEEecCCCEEEEEeCC---CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSE---NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTe---NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      ...+++++++..|+++-+.   ++.|+..|+.++....+.-.+..                                 ..
T Consensus        21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~---------------------------------~~   67 (357)
T 3i2n_A           21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA---------------------------------KP   67 (357)
T ss_dssp             EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES---------------------------------SC
T ss_pred             eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc---------------------------------Cc
Confidence            4678999988777777665   89999999887765433211101                                 01


Q ss_pred             cceeEEcCC---CeEEEEeCCCCEEEEEECCCCc
Q 013362           80 PWHLMKSED---DNLLIINRSFETLWIMDLASGE  110 (444)
Q Consensus        80 P~gL~~d~d---G~LYIADagnh~IrkIDl~tG~  110 (444)
                      ...+++.++   |.++++-...+.|+.+|+.++.
T Consensus        68 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  101 (357)
T 3i2n_A           68 IKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE  101 (357)
T ss_dssp             EEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS
T ss_pred             EEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC
Confidence            134555554   5666666678899999998875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=91.15  E-value=8.4  Score=34.77  Aligned_cols=64  Identities=16%  Similarity=0.196  Sum_probs=36.2

Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeee-cccccCCcccceeeeeecCCCeeeEE
Q 013362          170 QNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYA-VAGGHQGSWTDHIQRCSLLPGRIDIK  245 (444)
Q Consensus       170 ~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~-~~~~~~g~~~~~i~~v~~~pGri~i~  245 (444)
                      ++.||++.. ++.|.+++.++..+..+...+ +....      |   +.+ .++..-++....|..++. .|+..-+
T Consensus       225 ~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~-~~~~~------~---~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~  289 (330)
T 3hxj_A          225 DGTIYVTSL-DGHLYAINPDGTEKWRFKTGK-RIESS------P---VIGNTDTIYFGSYDGHLYAINP-DGTEKWN  289 (330)
T ss_dssp             TSCEEEEET-TTEEEEECTTSCEEEEEECSS-CCCSC------C---EECTTSCEEEECTTCEEEEECT-TSCEEEE
T ss_pred             CCeEEEEcC-CCeEEEECCCCCEeEEeeCCC-Ccccc------c---eEcCCCeEEEecCCCCEEEECC-CCcEEEE
Confidence            558999865 567888887666665553221 11111      1   222 344445566667888875 6765433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=91.06  E-value=2.7  Score=43.91  Aligned_cols=77  Identities=10%  Similarity=0.088  Sum_probs=45.3

Q ss_pred             CCEEEEEeCCCCeEEEEEC-CCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCe
Q 013362           12 DDCLYIVDSENHAIRRADM-GRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN   90 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl-~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~   90 (444)
                      ++.|||+...++.|..+|+ .+|.+.               |.+..... ......   .  -.  -....++++++ +.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~---------------W~~~~~~~-~~~~~~---~--~~--~~~~~~~~~~~-~~  117 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIV---------------WQHKPKQD-ASTKAV---M--CC--DVVDRGLAYGA-GQ  117 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE---------------EEECCCCC-GGGGGG---C--TT--CSCCCCCEEET-TE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEE---------------EEEcCCCC-cccccc---c--cc--cccccccEEEC-CE
Confidence            5589999876788999998 777553               22110000 000000   0  00  00012445655 79


Q ss_pred             EEEEeCCCCEEEEEECCCCcEEE
Q 013362           91 LLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        91 LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      ||+.. ..+++..+|+.||++.-
T Consensus       118 v~v~~-~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A          118 IVKKQ-ANGHLLALDAKTGKINW  139 (571)
T ss_dssp             EEEEC-TTSEEEEEETTTCCEEE
T ss_pred             EEEEe-CCCEEEEEECCCCCEEE
Confidence            99985 46789999999998754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=90.81  E-value=6.2  Score=37.64  Aligned_cols=93  Identities=15%  Similarity=0.168  Sum_probs=54.9

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..++|+++|..|..+  .+..|+..+..+|.. .++.+......          +.........       +..-..-..
T Consensus        68 ~~v~fspdg~~la~g--~~~~v~i~~~~~g~~~~~l~~~~~~~~----------~~~~~~~~~~-------~~~~~~v~~  128 (393)
T 1erj_A           68 CCVKFSNDGEYLATG--CNKTTQVYRVSDGSLVARLSDDSAANK----------DPENLNTSSS-------PSSDLYIRS  128 (393)
T ss_dssp             CEEEECTTSSEEEEE--CBSCEEEEETTTCCEEEEECC----------------------------------CCCCBEEE
T ss_pred             EEEEECCCCCEEEEE--cCCcEEEEEecCCCEEEEecCcccccc----------cccccccccc-------CCCceeEEE
Confidence            468899999766554  367899999887754 44544321100          0000000000       000112457


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      ++++++|.++++-...+.|+.+|+.++++....
T Consensus       129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~  161 (393)
T 1erj_A          129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL  161 (393)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            889998888888888999999999998765444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=90.78  E-value=2.1  Score=47.09  Aligned_cols=39  Identities=8%  Similarity=0.102  Sum_probs=30.5

Q ss_pred             CCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362           78 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      ..+..++++++|..++.-...+.|+.+|+.+|++..+..
T Consensus       379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence            456788999988755555566799999999999887763

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=90.65  E-value=5.3  Score=36.79  Aligned_cols=77  Identities=10%  Similarity=0.049  Sum_probs=52.8

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ...+++++++..|+++.. ++.|+..|.....+.++.+..                                   .....
T Consensus       111 v~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~-----------------------------------~~v~~  154 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGVE-NGELRLWNKTGALLNVLNFHR-----------------------------------APIVS  154 (425)
T ss_dssp             EEEEEECTTSSEEEEEET-TSCEEEEETTSCEEEEECCCC-----------------------------------SCEEE
T ss_pred             eEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCeeeeccCCC-----------------------------------ccEEE
Confidence            457889998877776654 678999986555565554321                                   11346


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      +++.+++.++++-...+.|+.+|+.++......
T Consensus       155 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (425)
T 1r5m_A          155 VKWNKDGTHIISMDVENVTILWNVISGTVMQHF  187 (425)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence            777777776666667889999999988754433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=90.61  E-value=7  Score=36.13  Aligned_cols=79  Identities=14%  Similarity=0.040  Sum_probs=51.5

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccC-CCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPT-SGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGt-G~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      ...+++++++  ++++-+.++.|+..|+.++.. .++.+. +..                    ..          -...
T Consensus       189 i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~--------------------~~----------~~~i  236 (397)
T 1sq9_A          189 ATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMI--------------------NN----------SNSI  236 (397)
T ss_dssp             CCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC-----------------------CC----------CCCE
T ss_pred             ceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEecccccc--------------------cc----------CCcc
Confidence            4678999887  555566789999999987643 333320 000                    00          1123


Q ss_pred             ceeEEcCCCeEEEEeCCC---CEEEEEECCCCcEEE
Q 013362           81 WHLMKSEDDNLLIINRSF---ETLWIMDLASGEIKE  113 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagn---h~IrkIDl~tG~I~T  113 (444)
                      ..+++++++.++++-...   +.|+.||+.+++...
T Consensus       237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~  272 (397)
T 1sq9_A          237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG  272 (397)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc
Confidence            567777777777766666   899999999886543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=90.54  E-value=5.8  Score=41.65  Aligned_cols=76  Identities=17%  Similarity=0.185  Sum_probs=44.4

Q ss_pred             eEEEecCCCEEEEEeC---CCCeEEEEECCCC--eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            5 ASFYHKDDDCLYIVDS---ENHAIRRADMGRR--VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         5 GIa~D~~g~~LYVADT---eNHaIRkIDl~tg--~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      +++++++|..|+|.-.   .++.|+.+|+.++  ...++......                                ..+
T Consensus       238 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~--------------------------------~~~  285 (693)
T 3iuj_A          238 GATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA--------------------------------DVS  285 (693)
T ss_dssp             EEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS--------------------------------CEE
T ss_pred             EEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc--------------------------------eEE
Confidence            6778888887766432   3358888887654  44444322100                                112


Q ss_pred             cceeEEcCCCeEEEEe-C--CCCEEEEEECCCCcE---EEee
Q 013362           80 PWHLMKSEDDNLLIIN-R--SFETLWIMDLASGEI---KEAV  115 (444)
Q Consensus        80 P~gL~~d~dG~LYIAD-a--gnh~IrkIDl~tG~I---~Tia  115 (444)
                      |  +.-++ +.||+.- .  .+.+|+++|++++..   +++.
T Consensus       286 ~--~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~  324 (693)
T 3iuj_A          286 L--VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI  324 (693)
T ss_dssp             E--EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             E--EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence            2  22233 5676653 2  368999999988754   5555

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=90.19  E-value=6.1  Score=34.83  Aligned_cols=71  Identities=4%  Similarity=-0.019  Sum_probs=47.4

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCC-----eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRR-----VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg-----~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      ..+++++++..|+.+. .++.||..|+.++     .+.++.+..                                   .
T Consensus        15 ~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~-----------------------------------~   58 (351)
T 3f3f_A           15 HDVVYDFYGRHVATCS-SDQHIKVFKLDKDTSNWELSDSWRAHD-----------------------------------S   58 (351)
T ss_dssp             EEEEECSSSSEEEEEE-TTSEEEEEEECSSSCCEEEEEEEECCS-----------------------------------S
T ss_pred             eEEEEcCCCCEEEEee-CCCeEEEEECCCCCCcceecceeccCC-----------------------------------C
Confidence            5789999887666664 5789999998754     223332221                                   1


Q ss_pred             CcceeEEcC--CCeEEEEeCCCCEEEEEECCCCc
Q 013362           79 FPWHLMKSE--DDNLLIINRSFETLWIMDLASGE  110 (444)
Q Consensus        79 ~P~gL~~d~--dG~LYIADagnh~IrkIDl~tG~  110 (444)
                      ....+++.+  ++.++++=...+.|+.+|+.++.
T Consensus        59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred             cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence            124566665  46777777778899999988764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.14  E-value=3.3  Score=43.66  Aligned_cols=120  Identities=11%  Similarity=0.094  Sum_probs=75.6

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      ..|+.|.+| .|||+...++-|-++|+.++.++.+...+..                     .          -+.+..+
T Consensus       475 ~~i~~d~~g-~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~---------------------~----------~~~~~~i  522 (758)
T 3ott_A          475 NQIIPDNEG-NVWVLLYNNKGIDKINPRTREVTKLFADELT---------------------G----------EKSPNYL  522 (758)
T ss_dssp             EEEEECTTS-CEEEEETTCSSEEEEETTTTEEEEECTTTSC---------------------G----------GGCEEEE
T ss_pred             eeEEEcCCC-CEEEEccCCCCcEEEeCCCCceEEecCCCcC---------------------C----------CcccceE
Confidence            457777666 5998444346688899888888776321100                     0          1235678


Q ss_pred             EEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccccc
Q 013362           84 MKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLI  163 (444)
Q Consensus        84 ~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~  163 (444)
                      ..+.+|.|||+-.  +-|.++|+.++.++.+..  .                                    |+|. ..+
T Consensus       523 ~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~--~------------------------------------gl~~-~~i  561 (758)
T 3ott_A          523 LCDEDGLLWVGFH--GGVMRINPKDESQQSISF--G------------------------------------SFSN-NEI  561 (758)
T ss_dssp             EECTTSCEEEEET--TEEEEECC--CCCCBCCC--C------------------------------------C----CCE
T ss_pred             EECCCCCEEEEec--CceEEEecCCCceEEecc--c------------------------------------CCCc-cce
Confidence            8998999999964  469999998877654420  0                                    1111 112


Q ss_pred             ccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeee
Q 013362          164 SSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQF  198 (444)
Q Consensus       164 Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~f  198 (444)
                      .++...++.|||+-  ++-|.+++++++.+..+..
T Consensus       562 ~~i~~~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~  594 (758)
T 3ott_A          562 LSMTCVKNSIWVST--TNGLWIIDRKTMDARQQNM  594 (758)
T ss_dssp             EEEEEETTEEEEEE--SSCEEEEETTTCCEEEC--
T ss_pred             EEEEECCCCEEEEC--CCCeEEEcCCCceeEEecC
Confidence            33444578999986  3459999999998877643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=90.07  E-value=2.1  Score=45.59  Aligned_cols=77  Identities=12%  Similarity=0.015  Sum_probs=45.4

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362           12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL   91 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L   91 (444)
                      ++.|||+.. ++.|..+|..+|.+.               |.+..... ......    .+.   -....++++++ +.|
T Consensus        77 ~g~vyv~~~-~~~v~AlD~~tG~~~---------------W~~~~~~~-~~~~~~----~~~---~~~~~~~a~~~-~~v  131 (677)
T 1kb0_A           77 DGIMYVSAS-WSVVHAIDTRTGNRI---------------WTYDPQID-RSTGFK----GCC---DVVNRGVALWK-GKV  131 (677)
T ss_dssp             TTEEEEECG-GGCEEEEETTTTEEE---------------EEECCCCC-GGGGGG----SSS---CSCCCCCEEET-TEE
T ss_pred             CCEEEEECC-CCeEEEEECCCCcEE---------------EEEcCCCC-cccccc----ccc---cCCCCCceEEC-CEE
Confidence            558999976 567999998887653               22220000 000000    000   01123556665 799


Q ss_pred             EEEeCCCCEEEEEECCCCcEEEe
Q 013362           92 LIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        92 YIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      |+.. ..++|..+|+.||++..-
T Consensus       132 ~v~~-~dg~l~alD~~tG~~~W~  153 (677)
T 1kb0_A          132 YVGA-WDGRLIALDAATGKEVWH  153 (677)
T ss_dssp             EEEC-TTSEEEEEETTTCCEEEE
T ss_pred             EEEc-CCCEEEEEECCCCCEEee
Confidence            9984 568999999999987533

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=89.99  E-value=3.3  Score=39.56  Aligned_cols=78  Identities=15%  Similarity=0.135  Sum_probs=47.6

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +..+++++.+..++++=+.++.||..|+.++. +.++.|..                                   ..-+
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~-----------------------------------~~v~  261 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS-----------------------------------QCVT  261 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS-----------------------------------SCEE
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC-----------------------------------CCEE
Confidence            34566766655566666667777777776542 33333221                                   1124


Q ss_pred             eeEEcCCC-eEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDD-NLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG-~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      .|++.++| .++++-...++|+.+|..+|++..+.
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~  296 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQ  296 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEEC
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEc
Confidence            67777766 45555667788999999998875543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=89.91  E-value=0.4  Score=46.27  Aligned_cols=67  Identities=16%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCC-------CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGR-------RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~t-------g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      -.-+|+||+| .||.+  .+..+.++++.+       +. .|..|++          +|.    +               
T Consensus        43 ~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~----------Gw~----~---------------   89 (236)
T 1tl2_A           43 FKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNG----------GWN----Q---------------   89 (236)
T ss_dssp             CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECS----------CGG----G---------------
T ss_pred             ceeEEECCCc-cEEEE--eCCeEEEECCCCCCccccccc-ccEeccc----------ccc----c---------------
Confidence            3468999976 69999  566799999766       33 3444432          122    0               


Q ss_pred             CCCCcceeEEcCCCeEEEEeCCCCEEEEEECCC
Q 013362           76 SLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS  108 (444)
Q Consensus        76 ~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~t  108 (444)
                          =..+.+|.+|.||+.  .+.+|+|+++-+
T Consensus        90 ----F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           90 ----FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             ----CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ----ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence                136788999999999  458999999754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=89.80  E-value=11  Score=33.97  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..+++++++..|+.+. ..+.||..++.++.. .++.+..                                   .....
T Consensus        27 ~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~h~-----------------------------------~~v~~   70 (312)
T 4ery_A           27 SSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGHK-----------------------------------LGISD   70 (312)
T ss_dssp             EEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEECCCS-----------------------------------SCEEE
T ss_pred             EEEEECCCCCEEEEee-CCCeEEEEeCCCcccchhhccCC-----------------------------------CceEE
Confidence            4688888887666654 567788888876543 3332210                                   11246


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEEE
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      +++.+++.++++-...+.|+.+|+.+++...
T Consensus        71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  101 (312)
T 4ery_A           71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLK  101 (312)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence            7788888888888888999999999887543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=89.75  E-value=5.3  Score=42.07  Aligned_cols=78  Identities=13%  Similarity=0.109  Sum_probs=46.3

Q ss_pred             ceEEEecCCCEEEEEeC----CCCeEEEEECCCC--e-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCC
Q 013362            4 AASFYHKDDDCLYIVDS----ENHAIRRADMGRR--V-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS   76 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADT----eNHaIRkIDl~tg--~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~   76 (444)
                      .+++++++|..|++.-.    .+..|+.+|+.++  . ..++.+....                                
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--------------------------------  318 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA--------------------------------  318 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS--------------------------------
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc--------------------------------
Confidence            36788888876665432    3568888888766  4 4455432100                                


Q ss_pred             CCCcceeEEcCCCeEEEEeC---CCCEEEEEECCCC--cEEEeec
Q 013362           77 LIFPWHLMKSEDDNLLIINR---SFETLWIMDLASG--EIKEAVK  116 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADa---gnh~IrkIDl~tG--~I~Tiag  116 (444)
                      ..+|+  .-++ +.||+.-.   .+.+|+++|+.++  ..+++..
T Consensus       319 ~~~~~--~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~  360 (741)
T 1yr2_A          319 QWDFV--DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP  360 (741)
T ss_dssp             CEEEE--EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred             eEEEE--eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence            12222  2233 56766632   3778999999874  5666653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=89.65  E-value=4.4  Score=43.04  Aligned_cols=80  Identities=11%  Similarity=0.046  Sum_probs=52.0

Q ss_pred             CCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           78 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      +....+..+.+|.|||+..  +-|.++|+.++.+ .+.......                                  ++
T Consensus       498 ~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~----------------------------------~l  540 (795)
T 4a2l_A          498 KQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVS----------------------------------NV  540 (795)
T ss_dssp             CCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSC----------------------------------GG
T ss_pred             ceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCC----------------------------------CC
Confidence            4457888999999999987  5799999988877 443100000                                  01


Q ss_pred             Cccccccccc-ccCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362          158 PYAGLISSSI-AFQNHILLCDIVGQRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       158 p~a~~~Sgla-~~~~~LyIADT~nhRIRkvdl~tG~vST~~  197 (444)
                      +. ..+.++. ..++.|||+-..  -|.++|.+++.+..+.
T Consensus       541 ~~-~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~~~~~~  578 (795)
T 4a2l_A          541 TK-LFTNCIYEASNGIIWVGTRE--GFYCFNEKDKQIKRYN  578 (795)
T ss_dssp             GG-SCEEEEEECTTSCEEEEESS--CEEEEETTTTEEEEEC
T ss_pred             CC-CeeEEEEECCCCCEEEEeCC--CceeECCCCCcEEEeC
Confidence            10 0122333 346789998654  6899999998887764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=89.59  E-value=10  Score=34.24  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=25.6

Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      +.+.+.+++.++++-...++|+.+|+.++...
T Consensus       111 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  142 (312)
T 4ery_A          111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL  142 (312)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE
Confidence            45667777888888888899999999988654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=89.52  E-value=7  Score=36.90  Aligned_cols=32  Identities=13%  Similarity=0.210  Sum_probs=25.8

Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ..++++++|.++++-...++|+.+|+.++...
T Consensus       180 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          180 YSVDWSRDGALICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence            57778877877777778899999999988654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=89.39  E-value=2.9  Score=40.49  Aligned_cols=80  Identities=13%  Similarity=0.066  Sum_probs=52.6

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEE-EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~Vt-TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..|+|+|.+..|.++=+.++.||.-|+.++... ++...|..               +     .          +   .+
T Consensus       123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~---------------~-----~----------V---~~  169 (435)
T 4e54_B          123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG---------------G-----S----------I---TG  169 (435)
T ss_dssp             EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS---------------C-----C----------C---CE
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC---------------C-----C----------E---EE
Confidence            468898865555555566788888887655322 22222211               0     0          1   36


Q ss_pred             eEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362           83 LMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        83 L~~d~-dG~LYIADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      |++.+ +++++++=...+.|+.||+.++.+.++..
T Consensus       170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  204 (435)
T 4e54_B          170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS  204 (435)
T ss_dssp             EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEEC
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEec
Confidence            67764 57788888888999999999888877764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=89.38  E-value=8.7  Score=36.42  Aligned_cols=76  Identities=11%  Similarity=-0.012  Sum_probs=46.5

Q ss_pred             ceEEEecCCCEEEEEeC--CCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            4 AASFYHKDDDCLYIVDS--ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADT--eNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      ..+++++++..|+++-.  .++.|+..|+.++........+                                   ....
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-----------------------------------~~v~  307 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-----------------------------------SQVT  307 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-----------------------------------SCEE
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-----------------------------------CcEE
Confidence            45677766655665533  5677777777655332211110                                   1135


Q ss_pred             eeEEcCCCeEEEE--eCCCCEEEEEECCCCcEEEe
Q 013362           82 HLMKSEDDNLLII--NRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        82 gL~~d~dG~LYIA--Dagnh~IrkIDl~tG~I~Ti  114 (444)
                      .++++++|..+++  -...++|+.+|+.++.....
T Consensus       308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~  342 (401)
T 4aez_A          308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ  342 (401)
T ss_dssp             EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred             EEEECCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence            6777777776666  34688999999888765544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=89.32  E-value=13  Score=33.99  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=52.0

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      -.+++|+|++..|..+. ..+.||.-|+.++. +.++.+....                                   -.
T Consensus        16 V~~~~fsp~~~~l~s~~-~dg~v~lWd~~~~~~~~~~~~~~~~-----------------------------------v~   59 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETP-----------------------------------VR   59 (304)
T ss_dssp             EEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSC-----------------------------------EE
T ss_pred             eEEEEECCCCCEEEEEc-CCCcEEEEECCCCceeEEeeccCCc-----------------------------------EE
Confidence            35799999997666554 67899999998774 3444332110                                   12


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      .+.+.++++++++-...++|+.+|+.+|+..
T Consensus        60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence            4556666777788788899999999998754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=89.29  E-value=3  Score=40.41  Aligned_cols=71  Identities=14%  Similarity=0.039  Sum_probs=49.1

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCe----EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV----LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~----VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      ...+++++.+..++++.+.++.||..|+.++.    +.++.+.                                   -.
T Consensus       234 v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------------------------~~  278 (430)
T 2xyi_A          234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-----------------------------------TA  278 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-----------------------------------SS
T ss_pred             EeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-----------------------------------CC
Confidence            35688887666788888888889999887541    1111100                                   12


Q ss_pred             CcceeEEcCCCe-EEEEeCCCCEEEEEECCC
Q 013362           79 FPWHLMKSEDDN-LLIINRSFETLWIMDLAS  108 (444)
Q Consensus        79 ~P~gL~~d~dG~-LYIADagnh~IrkIDl~t  108 (444)
                      .+..|++.+++. +|++-...+.|+.+|+.+
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            256788888764 788888889999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=89.28  E-value=14  Score=34.34  Aligned_cols=29  Identities=17%  Similarity=0.066  Sum_probs=23.3

Q ss_pred             cceeEEcCCCe-EEEEeCCCCEEEEEECCC
Q 013362           80 PWHLMKSEDDN-LLIINRSFETLWIMDLAS  108 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagnh~IrkIDl~t  108 (444)
                      ...+++.+++. ++++-...+.|+.+|+.+
T Consensus       207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             EEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            35677888776 777777888999999987

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=89.24  E-value=1.5  Score=44.90  Aligned_cols=81  Identities=10%  Similarity=0.097  Sum_probs=52.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|..++|.++|..||.  +....|+..|+.+|....+......                    .           -...+
T Consensus        18 ~~~~~~~spdg~~~~~--~~dg~i~~~d~~~g~~~~~~~~~~~--------------------~-----------~~~v~   64 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR--EQKGTVRLWNVETNTSTVLIEGKKI--------------------E-----------SLRAI   64 (723)
T ss_dssp             CCCCCCBSSSSCBCCC--CSSSCEEEBCGGGCCCEEEECTTTT--------------------T-----------TTTCS
T ss_pred             cccccEEcCCCcEEEE--eCCCCEEEEECCCCcEEEEeccccc--------------------c-----------ccccc
Confidence            3677889999975544  4567899999888765544422100                    0           01346


Q ss_pred             eeEEcCCCe-EEEEeC--------CCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDDN-LLIINR--------SFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG~-LYIADa--------gnh~IrkIDl~tG~I~Tia  115 (444)
                      .+++++||. |+.+..        ...+||.+|+.+|+.+.+.
T Consensus        65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  107 (723)
T 1xfd_A           65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD  107 (723)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred             eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc
Confidence            788888876 433321        1378999999999876665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.96  E-value=12  Score=38.44  Aligned_cols=30  Identities=3%  Similarity=-0.036  Sum_probs=23.1

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCC
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASG  109 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG  109 (444)
                      .+.+++.++|..+++-...+.|+.+|+.++
T Consensus       100 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A          100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             EEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence            467788888776666667789999998876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=88.60  E-value=2.9  Score=43.66  Aligned_cols=80  Identities=19%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             ceEEEecCCCEEEEEeC------------CCCeEEEEECCCCeE--EEec-cCCCcCccCCcchhhhhcccCcccccCcc
Q 013362            4 AASFYHKDDDCLYIVDS------------ENHAIRRADMGRRVL--ETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTK   68 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADT------------eNHaIRkIDl~tg~V--tTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a~~~   68 (444)
                      .+++|+++|..||.+..            .++.|++.++.++..  ..+. +.+..                        
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~------------------------  226 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP------------------------  226 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT------------------------
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC------------------------
Confidence            57899999987877754            256799988876641  1221 11100                        


Q ss_pred             ccCCCCCCCCCcceeEEcCCCe-EEE-E-eC-CCCEEEEEECCCCcEEEeec
Q 013362           69 SEKLDPQSLIFPWHLMKSEDDN-LLI-I-NR-SFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        69 ~~~~~~~~Ln~P~gL~~d~dG~-LYI-A-Da-gnh~IrkIDl~tG~I~Tiag  116 (444)
                               ..-+++.+++||. |++ + +. ++.+||.+|..+|..+.+..
T Consensus       227 ---------~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~  269 (695)
T 2bkl_A          227 ---------TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK  269 (695)
T ss_dssp             ---------TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred             ---------EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence                     0113556677765 332 2 22 35699999887888877764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=88.57  E-value=2.2  Score=38.48  Aligned_cols=77  Identities=8%  Similarity=-0.027  Sum_probs=53.4

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCe----EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV----LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~----VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      -.++++++++..|+++. .++.|+..++.++.    +..+.+..                                   .
T Consensus        14 v~~~~~s~~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~-----------------------------------~   57 (342)
T 1yfq_A           14 ISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYK-----------------------------------H   57 (342)
T ss_dssp             EEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECS-----------------------------------S
T ss_pred             EEEEEEcCCCCEEEEEc-CCCeEEEEEeCCCCccccceeeeecC-----------------------------------C
Confidence            35789999987777765 56889999887664    43333211                                   1


Q ss_pred             CcceeEEcCCCe-EEEEeCCCCEEEEEEC-CCCcEEEee
Q 013362           79 FPWHLMKSEDDN-LLIINRSFETLWIMDL-ASGEIKEAV  115 (444)
Q Consensus        79 ~P~gL~~d~dG~-LYIADagnh~IrkIDl-~tG~I~Tia  115 (444)
                      ....+++.+++. ++++-...++|+.+|+ .++...++.
T Consensus        58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~   96 (342)
T 1yfq_A           58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT   96 (342)
T ss_dssp             CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB
T ss_pred             ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecc
Confidence            134677777777 6666667889999999 988886654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=88.55  E-value=13  Score=33.28  Aligned_cols=72  Identities=8%  Similarity=0.013  Sum_probs=44.7

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      ..++++++++.|+.+. .++.||..|+.++.+..+.+..                                   ...+.+
T Consensus        90 ~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-----------------------------------~~v~~~  133 (368)
T 3mmy_A           90 LDVCWSDDGSKVFTAS-CDKTAKMWDLSSNQAIQIAQHD-----------------------------------APVKTI  133 (368)
T ss_dssp             EEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECS-----------------------------------SCEEEE
T ss_pred             EEEEECcCCCEEEEEc-CCCcEEEEEcCCCCceeecccc-----------------------------------CceEEE
Confidence            3566666665555443 3566777776666554433221                                   112456


Q ss_pred             EE--cCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           84 MK--SEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        84 ~~--d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      .+  .+++.++++-...+.|+.+|+.+++.
T Consensus       134 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          134 HWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             EEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             EEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            66  66777777777788999999888763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=88.50  E-value=2.2  Score=40.56  Aligned_cols=32  Identities=6%  Similarity=0.185  Sum_probs=24.2

Q ss_pred             CcceeEEcCC-CeEEEEeCCCCEEEEEECCCCc
Q 013362           79 FPWHLMKSED-DNLLIINRSFETLWIMDLASGE  110 (444)
Q Consensus        79 ~P~gL~~d~d-G~LYIADagnh~IrkIDl~tG~  110 (444)
                      .+..|++.++ +.++++-...+.|+.+|+.++.
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCc
Confidence            3567888765 5666666678899999998875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=88.08  E-value=7.6  Score=40.48  Aligned_cols=75  Identities=15%  Similarity=0.157  Sum_probs=42.8

Q ss_pred             eEEEecCCCEEEEEeC---CCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            5 ASFYHKDDDCLYIVDS---ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         5 GIa~D~~g~~LYVADT---eNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +++++++|..|+++-.   .+..|+.++..++...++.+....                                ..+|+
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~--------------------------------~~~~~  278 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA--------------------------------KYEVH  278 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC--------------------------------CEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc--------------------------------eEEEE
Confidence            6778888876655432   345777776655555555432100                                12222


Q ss_pred             eeEEcCCCeEEEEeC---CCCEEEEEECCCCcE---EEee
Q 013362           82 HLMKSEDDNLLIINR---SFETLWIMDLASGEI---KEAV  115 (444)
Q Consensus        82 gL~~d~dG~LYIADa---gnh~IrkIDl~tG~I---~Tia  115 (444)
                         ..+ |.||+.-.   .+.+|+++|+.++..   +++.
T Consensus       279 ---~~~-g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  314 (695)
T 2bkl_A          279 ---AWK-DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIV  314 (695)
T ss_dssp             ---EET-TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred             ---ecC-CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence               122 33777543   578999999988762   5555

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=87.42  E-value=5  Score=38.01  Aligned_cols=78  Identities=15%  Similarity=0.092  Sum_probs=48.8

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +..++++++++.++++=+.++.||..|+.++. +.++.|..                                   ..-.
T Consensus       229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~-----------------------------------~~v~  273 (357)
T 4g56_B          229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS-----------------------------------QNIT  273 (357)
T ss_dssp             EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS-----------------------------------SCEE
T ss_pred             ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc-----------------------------------eeEE
Confidence            45677877766566665667788888876542 33332221                                   1124


Q ss_pred             eeEEcCCC-eEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDD-NLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG-~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      .|++.+++ .++++=...++|+.+|+.+|++-...
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            66777665 44455556788999999998765444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=87.41  E-value=15  Score=40.38  Aligned_cols=75  Identities=12%  Similarity=0.085  Sum_probs=54.0

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      .++++++++..|..+. .++.|+..|+.++. +.++.|..                                   .....
T Consensus       619 ~~~~~s~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~h~-----------------------------------~~v~~  662 (1249)
T 3sfz_A          619 YHACFSQDGQRIASCG-ADKTLQVFKAETGEKLLDIKAHE-----------------------------------DEVLC  662 (1249)
T ss_dssp             EEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEECCCS-----------------------------------SCEEE
T ss_pred             EEEEECCCCCEEEEEe-CCCeEEEEECCCCCEEEEeccCC-----------------------------------CCEEE
Confidence            4689999998776664 66789999988764 44444321                                   11246


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEEEe
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      ++++++|.++++-...++|+.||+.+|+....
T Consensus       663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~  694 (1249)
T 3sfz_A          663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHT  694 (1249)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            77888888777777889999999999875433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.26  E-value=14  Score=37.97  Aligned_cols=75  Identities=9%  Similarity=0.026  Sum_probs=52.9

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      ..++++++++..|.++. .++.|+..|+.++. +.++.+...                                   ...
T Consensus        16 v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~~-----------------------------------~v~   59 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTET-----------------------------------PVR   59 (814)
T ss_dssp             EEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSS-----------------------------------CEE
T ss_pred             eEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEecCCC-----------------------------------cEE
Confidence            46899999998888776 57899999988774 344433210                                   124


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEE
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      .++++++|.++++=...+.|+.+|+.+|....
T Consensus        60 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (814)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            56677777666665668899999998886543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=87.23  E-value=23  Score=36.79  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=28.2

Q ss_pred             cccCCeEEEEeCCCCeEEEEeCCCCeEE-EeeeccccccCCceee
Q 013362          167 IAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNFAILGLPYWF  210 (444)
Q Consensus       167 a~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg~g~lg~P~~l  210 (444)
                      ...++.||++ +....|+.+|.+||.+. ++. .+.++.+.|..+
T Consensus       472 ~t~gg~v~~g-~~dg~l~a~D~~tG~~lw~~~-~~~~~~~~p~~~  514 (571)
T 2ad6_A          472 YTKGGLVWYA-TLDGYLKALDNKDGKELWNFK-MPSGGIGSPMTY  514 (571)
T ss_dssp             EETTTEEEEE-CTTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE
T ss_pred             EECCCEEEEE-cCCCeEEEEECCCCCEEEEEe-CCCCcEeeeEEE
Confidence            3457788887 45689999999998874 333 233566666553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=87.16  E-value=16  Score=33.99  Aligned_cols=32  Identities=13%  Similarity=0.024  Sum_probs=26.8

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      ...|++.++|.++++-...+.|+.+|+.++..
T Consensus       229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~  260 (340)
T 1got_B          229 INAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            45788888888888888899999999988754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=87.12  E-value=19  Score=33.43  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=27.8

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      ...++++++|.++++-...+.|+.+|+.+|+...
T Consensus       167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~  200 (321)
T 3ow8_A          167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH  200 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            3577888888888888888999999999987543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=86.91  E-value=7.8  Score=36.48  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=51.8

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCe-----EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV-----LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-----VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      ...+++++++..++++=+..+.||..|+.++.     +.++.+.......  ..  +. +                  ..
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~--~~-~------------------~~  285 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNR--SF--FS-E------------------II  285 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----C--CH--HH-H------------------HT
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccc--cc--cc-c------------------cC
Confidence            45789999883345555567899999998776     3555544211000  00  00 0                  01


Q ss_pred             CCcceeEEcCCCeEEEEeCCCCEEEEEECCC-Cc
Q 013362           78 IFPWHLMKSEDDNLLIINRSFETLWIMDLAS-GE  110 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh~IrkIDl~t-G~  110 (444)
                      ..-..++++++|.++++-.. +.|+.||+.+ +.
T Consensus       286 ~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          286 SSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             TCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred             ceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence            23467888888877666666 9999999986 54

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=86.72  E-value=4.6  Score=37.52  Aligned_cols=34  Identities=21%  Similarity=0.106  Sum_probs=27.0

Q ss_pred             CcceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           79 FPWHLMKSE-DDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        79 ~P~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ....+++++ ++.++++-...++|+.+|+.+++..
T Consensus       264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence            356788877 6788888888899999999988643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=86.28  E-value=7.7  Score=37.49  Aligned_cols=82  Identities=11%  Similarity=0.072  Sum_probs=48.5

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEE-eccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLET-VYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtT-VAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +..+++++++..++++=+.++.|+..|+.+..-.. ..|.+..      +..+.    +            +   -..+.
T Consensus       131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~------~~~~~----~------------h---~~~v~  185 (430)
T 2xyi_A          131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQP------DLRLR----G------------H---QKEGY  185 (430)
T ss_dssp             CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCC------SEEEE----C------------C---SSCCC
T ss_pred             EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCC------cEEec----C------------C---CCCeE
Confidence            56788888744566666777888888875420000 0000000      00000    0            0   12356


Q ss_pred             eeEEcCCCe-EEEEeCCCCEEEEEECCCC
Q 013362           82 HLMKSEDDN-LLIINRSFETLWIMDLASG  109 (444)
Q Consensus        82 gL~~d~dG~-LYIADagnh~IrkIDl~tG  109 (444)
                      +|++++++. ++++-...++|+.+|+.++
T Consensus       186 ~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  214 (430)
T 2xyi_A          186 GLSWNPNLNGYLLSASDDHTICLWDINAT  214 (430)
T ss_dssp             CEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred             EEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence            888888766 7888888899999999874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=86.20  E-value=10  Score=39.53  Aligned_cols=31  Identities=6%  Similarity=0.140  Sum_probs=21.7

Q ss_pred             ceEEEecCCCEEEEEeCC---------------CCeEEEEECCCCe
Q 013362            4 AASFYHKDDDCLYIVDSE---------------NHAIRRADMGRRV   34 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTe---------------NHaIRkIDl~tg~   34 (444)
                      .+++|+++|+.||++-..               .+.|++.++.++.
T Consensus       174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred             ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence            568999999878776432               3458888776553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=85.99  E-value=16  Score=33.45  Aligned_cols=87  Identities=13%  Similarity=0.008  Sum_probs=49.6

Q ss_pred             cceEEEecCCC-EEEEEeCCCCeEEEEEC----CCCe-------EEEeccCCCcCccCCcchhhhhcccCcccccCcccc
Q 013362            3 PAASFYHKDDD-CLYIVDSENHAIRRADM----GRRV-------LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSE   70 (444)
Q Consensus         3 P~GIa~D~~g~-~LYVADTeNHaIRkIDl----~tg~-------VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~   70 (444)
                      ...+++++++. .|+++. .++.|+..++    .++.       +.++...-..         .. ...+.         
T Consensus        48 v~~~~~s~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~---------  107 (425)
T 1r5m_A           48 IVSSTWNPLDESILAYGE-KNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL---------SA-SSGKT---------  107 (425)
T ss_dssp             CSEEEECSSCTTEEEEEE-TBTEEEEEEEEEC------CEEEEEEEEEECCCCC---------C----------------
T ss_pred             eEEEEECCCCCcEEEEec-CCceEEEEEEecccCCccccccccccccccccccc---------cc-cccCC---------
Confidence            35789999997 666664 5789999998    7665       2223221000         00 00000         


Q ss_pred             CCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           71 KLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        71 ~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                            -.....++++++|.++++-..++.|+.+|.....+..+.
T Consensus       108 ------~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~  146 (425)
T 1r5m_A          108 ------TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLN  146 (425)
T ss_dssp             ------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred             ------CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeecc
Confidence                  123467888888877777777889999995444444443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=85.58  E-value=13  Score=35.14  Aligned_cols=93  Identities=14%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             CCCeEEEEeCCCCEEEEEECCCCcEEEee-cCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccccccc
Q 013362           87 EDDNLLIINRSFETLWIMDLASGEIKEAV-KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISS  165 (444)
Q Consensus        87 ~dG~LYIADagnh~IrkIDl~tG~I~Tia-gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sg  165 (444)
                      .++.++++-...+.|+.||+.+|...... +....+....          + .+...+.     ......|..+...+..
T Consensus       271 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~l-----~~~~~~~~~~~~~v~~  334 (437)
T 3gre_A          271 KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH----------F-LPIEKGL-----EELNFCGIRSLNALST  334 (437)
T ss_dssp             TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG----------G-SCBCSSG-----GGCCCCCCCSGGGGCC
T ss_pred             CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce----------e-ccccccc-----ccceecccccCCceEE
Confidence            45677788888889999999988754433 3221111000          0 0000000     0001122223333455


Q ss_pred             ccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          166 SIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       166 la~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                      ++-..+.++++=.....|+..|+.++....
T Consensus       335 l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          335 ISVSNDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             EEEETTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEECCceEEEecCCCCeEEEEECCCcccce
Confidence            555566788888888999999999887543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=85.55  E-value=26  Score=33.59  Aligned_cols=76  Identities=13%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..++++++++.|+.+ +..+.||..|+.++. +.++.|..                                   ..-..
T Consensus       196 ~~v~~~p~~~~l~s~-s~D~~i~~wd~~~~~~~~~~~~h~-----------------------------------~~v~~  239 (410)
T 1vyh_C          196 SSVSIMPNGDHIVSA-SRDKTIKMWEVQTGYCVKTFTGHR-----------------------------------EWVRM  239 (410)
T ss_dssp             EEEEECSSSSEEEEE-ETTSEEEEEETTTCCEEEEEECCS-----------------------------------SCEEE
T ss_pred             EEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEEEEeCCC-----------------------------------ccEEE
Confidence            456777776544433 456777777776653 33443221                                   01134


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      +.+.++|.++++-...+.|+.||+.++......
T Consensus       240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~  272 (410)
T 1vyh_C          240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL  272 (410)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence            566777888888888999999999988765433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=85.41  E-value=6.3  Score=41.40  Aligned_cols=81  Identities=14%  Similarity=0.036  Sum_probs=49.3

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      ..+++.++|..||. +  ...|+..|+.+|...++.-....       +.+                      -....++
T Consensus        20 ~~~~w~~dg~~~~~-~--~~~i~~~~~~~~~~~~~~~~~~~-------~~~----------------------~~~~~~~   67 (740)
T 4a5s_A           20 YSLRWISDHEYLYK-Q--ENNILVFNAEYGNSSVFLENSTF-------DEF----------------------GHSINDY   67 (740)
T ss_dssp             CCEEECSSSEEEEE-E--TTEEEEEETTTCCEEEEECTTTT-------TTC----------------------CSCCCEE
T ss_pred             cccEECCCCcEEEE-c--CCcEEEEECCCCceEEEEechhh-------hhh----------------------cccccce
Confidence            46788888854444 4  67999999999876555322111       000                      0012356


Q ss_pred             EEcCCCe-EEEEeC--------CCCEEEEEECCCCcEEEeec
Q 013362           84 MKSEDDN-LLIINR--------SFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        84 ~~d~dG~-LYIADa--------gnh~IrkIDl~tG~I~Tiag  116 (444)
                      .+++||. |+++-.        ++..+|.+|+.+|++..+..
T Consensus        68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~  109 (740)
T 4a5s_A           68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER  109 (740)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred             EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc
Confidence            7777776 333221        12578899999998877653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=85.25  E-value=9.9  Score=34.82  Aligned_cols=35  Identities=14%  Similarity=0.004  Sum_probs=28.0

Q ss_pred             CCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           78 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      .....++++++|.++++-...+.|+.+|+.++...
T Consensus       246 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT  280 (408)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred             CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence            34578889988887777778889999999988653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=85.17  E-value=21  Score=32.07  Aligned_cols=77  Identities=14%  Similarity=0.064  Sum_probs=50.8

Q ss_pred             ceEEEecCCC---EEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            4 AASFYHKDDD---CLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         4 ~GIa~D~~g~---~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      ..+++++++.   .++++=+.++.|+..|+.++. +.++.+..                                   ..
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------------------------~~  117 (366)
T 3k26_A           73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG-----------------------------------NA  117 (366)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC-----------------------------------SC
T ss_pred             EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC-----------------------------------Cc
Confidence            5678888732   344444567899999988664 33333221                                   11


Q ss_pred             cceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           80 PWHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        80 P~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      ...+++.+ ++.++++-...+.|+.+|+.+++.....
T Consensus       118 i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A          118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence            24667776 6777777777889999999988755443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=85.08  E-value=9.8  Score=37.30  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=29.4

Q ss_pred             CCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEE
Q 013362           78 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      .....++++++|.++++-...+.|+.+|+.+++...
T Consensus       489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  524 (615)
T 1pgu_A          489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT  524 (615)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee
Confidence            346788999888888887788999999999887643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=84.94  E-value=5.8  Score=41.60  Aligned_cols=74  Identities=11%  Similarity=0.092  Sum_probs=44.5

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362           12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL   91 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L   91 (444)
                      ++.|||+...++ |..+|+.+|.+.               |.+....  .. ...   .    .--....++++.+ +.|
T Consensus        68 ~g~vyv~~~~~~-v~AlD~~tG~~~---------------W~~~~~~--~~-~~~---~----~~~~~~~g~a~~~-~~v  120 (582)
T 1flg_A           68 DGVIYVTASYSR-LFALDAKTGKRL---------------WTYNHRL--PD-DIR---P----CCDVVNRGAAIYG-DKV  120 (582)
T ss_dssp             TTEEEEEETTTE-EEEEESSSCCEE---------------EEEECCC--CT-TCC---C----SSCSCCCCCEEET-TEE
T ss_pred             CCEEEEEcCCCC-EEEEECCCCcEE---------------EEEcCCC--Cc-ccc---c----ccccCCCccEEEC-CEE
Confidence            458999988655 999998877552               3221000  00 000   0    0000113455655 799


Q ss_pred             EEEeCCCCEEEEEECCCCcEEE
Q 013362           92 LIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        92 YIADagnh~IrkIDl~tG~I~T  113 (444)
                      |+.. ..++|..+|+.||++.-
T Consensus       121 ~~~t-~dg~l~AlD~~TG~~~W  141 (582)
T 1flg_A          121 FFGT-LDASVVALNKNTGKVVW  141 (582)
T ss_dssp             EEEE-TTTEEEEEESSSCCEEE
T ss_pred             EEEe-CCCEEEEEECCCCCEEe
Confidence            9986 46789999999998754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=84.78  E-value=13  Score=34.41  Aligned_cols=32  Identities=19%  Similarity=0.054  Sum_probs=26.9

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      ...++++++|.++++=...+.|+.+|+.++..
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence            35788888888888878899999999998864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=84.53  E-value=17  Score=38.39  Aligned_cols=76  Identities=12%  Similarity=-0.056  Sum_probs=45.1

Q ss_pred             CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362           12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL   91 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L   91 (444)
                      ++.|||+.. ++.|..+|..+|.+-=-.-.+..            ...+.....           -....++++++ +.|
T Consensus        66 ~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~------------~~~~~~~~~-----------~~~~~~~~~~~-~~v  120 (668)
T 1kv9_A           66 DGVIYTSMS-WSRVIAVDAASGKELWRYDPEVA------------KVKARTSCC-----------DAVNRGVALWG-DKV  120 (668)
T ss_dssp             TTEEEEEEG-GGEEEEEETTTCCEEEEECCCCC------------GGGGGGCTT-----------CSCCCCCEEEB-TEE
T ss_pred             CCEEEEECC-CCeEEEEECCCChhceEECCCCC------------ccccccccc-----------cCCccceEEEC-CEE
Confidence            558999976 46799999888765322211100            000000000           00124556665 799


Q ss_pred             EEEeCCCCEEEEEECCCCcEEE
Q 013362           92 LIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        92 YIADagnh~IrkIDl~tG~I~T  113 (444)
                      |+.. ..++|..+|+.||++.-
T Consensus       121 ~v~~-~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A          121 YVGT-LDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             EEEC-TTSEEEEEETTTCCEEE
T ss_pred             EEEc-CCCEEEEEECCCCCEee
Confidence            9985 56899999999998753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=84.36  E-value=11  Score=36.20  Aligned_cols=72  Identities=15%  Similarity=0.051  Sum_probs=50.6

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..+++++++. ++++=+..+.||..|+.++. +.++.|-.                                   ..-+.
T Consensus       112 ~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~-----------------------------------~~V~~  155 (410)
T 1vyh_C          112 TRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHT-----------------------------------DSVQD  155 (410)
T ss_dssp             EEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCS-----------------------------------SCEEE
T ss_pred             EEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccC-----------------------------------CcEEE
Confidence            4678888875 55555567889999987663 33333221                                   11246


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      |+++++|.++++-...++|+.||+.++..
T Consensus       156 v~~~~~~~~l~sgs~D~~i~iwd~~~~~~  184 (410)
T 1vyh_C          156 ISFDHSGKLLASCSADMTIKLWDFQGFEC  184 (410)
T ss_dssp             EEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            77888888888888899999999988764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=84.08  E-value=25  Score=37.21  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             ccccCCeEEEEeCCCCeEEEEeCCCCeEE-EeeeccccccCCceeee
Q 013362          166 SIAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNFAILGLPYWFA  211 (444)
Q Consensus       166 la~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg~g~lg~P~~l~  211 (444)
                      ++..++.||+. +....++.+|.++|.+- .+.. +.++.+.|..+.
T Consensus       465 ~~t~gg~vf~g-~~dg~l~a~d~~tG~~l~~~~~-~~~~~~~p~~~~  509 (668)
T 1kv9_A          465 LSTAGNLVFQG-TAAGQMHAYSADKGEALWQFEA-QSGIVAAPMTFE  509 (668)
T ss_dssp             EEETTTEEEEE-CTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEE
T ss_pred             eEeCCCEEEEE-CCcccchhhhhhcChhheEecC-CCCcccCceEEE
Confidence            34567788988 56789999999988864 4433 356777777663

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=83.89  E-value=16  Score=32.81  Aligned_cols=80  Identities=9%  Similarity=0.008  Sum_probs=49.3

Q ss_pred             ceEEEecC---CCEEEEEeCCCCeEEEEECCCC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            4 AASFYHKD---DDCLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         4 ~GIa~D~~---g~~LYVADTeNHaIRkIDl~tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .+++++|.   ++.+++|=..+..|+..|+.++ .+.++.+-...                 .   .          -..
T Consensus        22 ~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~-----------------~---~----------~~~   71 (366)
T 3k26_A           22 FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA-----------------D---A----------DEN   71 (366)
T ss_dssp             EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS-----------------C---T----------TCC
T ss_pred             EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc-----------------C---C----------CCc
Confidence            57888863   4445555555569999998744 44444432100                 0   0          112


Q ss_pred             cceeEEcCC----CeEEEEeCCCCEEEEEECCCCcEEE
Q 013362           80 PWHLMKSED----DNLLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        80 P~gL~~d~d----G~LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      ...+++..+    |.++++-...+.|+.+|+.+++...
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  109 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK  109 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee
Confidence            345666665    6677777788999999999887543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.87  E-value=0.76  Score=47.43  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             CCCcceeEEcCCCe--EEEEeCCCCEEEEEECC
Q 013362           77 LIFPWHLMKSEDDN--LLIINRSFETLWIMDLA  107 (444)
Q Consensus        77 Ln~P~gL~~d~dG~--LYIADagnh~IrkIDl~  107 (444)
                      |..||+|++.++|.  |||+++. .+||+++.+
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~-G~i~~~~~~   44 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKE-GYVKILTPE   44 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETT-TEEEEECTT
T ss_pred             CCCceEEEECCCCCeEEEEEeCC-ceEEEEeCC
Confidence            89999999999885  9999984 799999764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.58  E-value=2.5  Score=43.58  Aligned_cols=29  Identities=10%  Similarity=0.006  Sum_probs=25.3

Q ss_pred             CCCcceeEEcCCCeEEEEeC-------CCCEEEEEE
Q 013362           77 LIFPWHLMKSEDDNLLIINR-------SFETLWIMD  105 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADa-------gnh~IrkID  105 (444)
                      ...|.+|.+++||.|||+|.       ...+||||-
T Consensus       335 ~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          335 SGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             CSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             cCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence            45689999999999999997       578999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=83.54  E-value=25  Score=31.77  Aligned_cols=31  Identities=3%  Similarity=0.033  Sum_probs=23.2

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCc
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGE  110 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~  110 (444)
                      ...+++.+++.++++-..++.|+.+|+.++.
T Consensus        99 v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           99 ARCVRWAPNEKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             eeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence            5678888877766666677888888877665

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=83.52  E-value=23  Score=32.98  Aligned_cols=96  Identities=9%  Similarity=-0.053  Sum_probs=54.0

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..+++++++..|+.+. ..+.||..|+.++. +.++.+....   ...+........+... .       ....-.....
T Consensus       185 ~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~-~-------~~~~~~~v~~  252 (420)
T 3vl1_A          185 TDIAIIDRGRNVLSAS-LDGTIRLWECGTGTTIHTFNRKENP---HDGVNSIALFVGTDRQ-L-------HEISTSKKNN  252 (420)
T ss_dssp             EEEEEETTTTEEEEEE-TTSCEEEEETTTTEEEEEECBTTBT---TCCEEEEEEEECCCSS-C-------GGGCCCCCCT
T ss_pred             EEEEEcCCCCEEEEEc-CCCcEEEeECCCCceeEEeecCCCC---CCCccEEEEecCCcce-e-------eecccCcccc
Confidence            5788998887666554 56789999998775 4444432111   0111000000000000 0       0000123345


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      ++++++|.++++-...+.|+.+|+.++..
T Consensus       253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  281 (420)
T 3vl1_A          253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQ  281 (420)
T ss_dssp             TCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred             eEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence            66778888888888889999999988764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=83.39  E-value=6.9  Score=38.79  Aligned_cols=85  Identities=6%  Similarity=-0.125  Sum_probs=51.3

Q ss_pred             cceEEEecCCCEEEE---EeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            3 PAASFYHKDDDCLYI---VDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         3 P~GIa~D~~g~~LYV---ADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      +..++|+++|..|+|   +-+..+.||..|+.++.    .|.-.. .+  -+.... -..|-               -..
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~----~~~~~~-~~--~~~~~~-~~~~h---------------~~~  151 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFS----NEAKQQ-KR--PFAYHK-LLKDA---------------GGM  151 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHH----CTTCSS-CC--CSEEEE-CCCSG---------------GGS
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccc----cCCcCC-cc--eeeeee-ccCCC---------------CCc
Confidence            568899999988887   55677889999875431    010000 00  000000 00000               112


Q ss_pred             cceeEEcCC-CeEEEEeCCCCEEEEEECCCCc
Q 013362           80 PWHLMKSED-DNLLIINRSFETLWIMDLASGE  110 (444)
Q Consensus        80 P~gL~~d~d-G~LYIADagnh~IrkIDl~tG~  110 (444)
                      ..+|++.++ +.++++-...++|+.||+.++.
T Consensus       152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~  183 (434)
T 2oit_A          152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETV  183 (434)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred             eEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence            467888876 6788877889999999998884

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=83.01  E-value=31  Score=35.17  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=28.5

Q ss_pred             CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ..+.|+++++|.++++=...++|+.+|+.+|+..
T Consensus       241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            3568899998888888888999999999988643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=82.95  E-value=9.9  Score=35.34  Aligned_cols=33  Identities=12%  Similarity=-0.037  Sum_probs=27.7

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ...++++++|.++++-...+.|+.+|..++...
T Consensus       273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~  305 (340)
T 1got_B          273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence            457888888999899889999999999887643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=82.92  E-value=5.9  Score=37.60  Aligned_cols=32  Identities=22%  Similarity=0.105  Sum_probs=25.2

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      ...++++++|.++++-...+.|+.||+.+|+.
T Consensus       352 v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          352 VLYSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             CCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            46788888888888888899999999988764

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.86  E-value=2.3  Score=45.82  Aligned_cols=62  Identities=18%  Similarity=0.070  Sum_probs=46.3

Q ss_pred             CCcceEEEecCCCEEEE-EeC-----------CCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCcc
Q 013362            1 MRPAASFYHKDDDCLYI-VDS-----------ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTK   68 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYV-ADT-----------eNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~   68 (444)
                      +.|-+|++|++| .||| .|.           .|+.|-+++..+|.+..++-.  .                     .  
T Consensus       476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~--P---------------------~--  529 (592)
T 4a9v_A          476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--P---------------------I--  529 (592)
T ss_dssp             CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC--C---------------------T--
T ss_pred             CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC--C---------------------C--
Confidence            368899999988 6999 786           366888888888888777621  1                     0  


Q ss_pred             ccCCCCCCCCCcceeEEcCCC-eEEEEeC
Q 013362           69 SEKLDPQSLIFPWHLMKSEDD-NLLIINR   96 (444)
Q Consensus        69 ~~~~~~~~Ln~P~gL~~d~dG-~LYIADa   96 (444)
                              ..+|.|+++++|+ .|||+-.
T Consensus       530 --------~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          530 --------GCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             --------TCEEEEEEECTTSSEEEEEEE
T ss_pred             --------CccccCCEECCCCCEEEEEEe
Confidence                    4557899998874 7999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=82.84  E-value=15  Score=32.34  Aligned_cols=34  Identities=12%  Similarity=0.190  Sum_probs=24.4

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEe
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      ...++++++|.| ++-...++|+.+|+.+++....
T Consensus       228 i~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~  261 (313)
T 3odt_A          228 VYCIKLLPNGDI-VSCGEDRTVRIWSKENGSLKQV  261 (313)
T ss_dssp             EEEEEECTTSCE-EEEETTSEEEEECTTTCCEEEE
T ss_pred             EEEEEEecCCCE-EEEecCCEEEEEECCCCceeEE
Confidence            356778877754 4555778999999998875433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=82.80  E-value=4.7  Score=36.84  Aligned_cols=18  Identities=39%  Similarity=0.612  Sum_probs=14.5

Q ss_pred             CCEEEEEECCCCcE-EEee
Q 013362           98 FETLWIMDLASGEI-KEAV  115 (444)
Q Consensus        98 nh~IrkIDl~tG~I-~Tia  115 (444)
                      ..+|+++|+.+|+. ..+.
T Consensus       151 ~~~l~~~d~~~~~~~~~l~  169 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFE  169 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEECCCCeEEeeec
Confidence            46899999999987 6654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=82.14  E-value=12  Score=40.35  Aligned_cols=74  Identities=9%  Similarity=0.104  Sum_probs=53.5

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCe--------EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV--------LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~--------VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      ..++|+|+|..|+++. ..+.||.-|+.++.        +.|+-+....            .                  
T Consensus       133 ~svafSPDG~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g------------h------------------  181 (588)
T 2j04_A          133 HCFEWNPIESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIRLSDAG------------S------------------  181 (588)
T ss_dssp             EEEEECSSSSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEECSCTT------------C------------------
T ss_pred             EEEEEcCCCCEEEEEc-CCCEEEEEECCCCccccccceeeeeeeccccc------------c------------------
Confidence            4689999998888884 57889999998873        5666322100            0                  


Q ss_pred             CCCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           76 SLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        76 ~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                       ...-.+|++.++|  ++|-...+.|+.||++++.+
T Consensus       182 -~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          182 -KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             -CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred             -cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence             1122578888877  67778899999999988774

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=81.89  E-value=35  Score=32.19  Aligned_cols=35  Identities=11%  Similarity=0.003  Sum_probs=29.1

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEe
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      -..|++.++|.++++-...++|+.||+.+|.....
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            35788888899999999999999999999865433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=81.17  E-value=24  Score=37.39  Aligned_cols=77  Identities=12%  Similarity=0.021  Sum_probs=44.7

Q ss_pred             CCEEEEEeCCCCeEEEEEC-CCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEE--cCC
Q 013362           12 DDCLYIVDSENHAIRRADM-GRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMK--SED   88 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl-~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~--d~d   88 (444)
                      ++.||++...++.|..+|. .+|.+.               |.+..... ......   . + .  -....++++  .+ 
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~l---------------W~~~~~~~-~~~~~~---~-~-~--~~~~~g~av~p~~-  117 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTIL---------------WQDKPKQN-PAARAV---A-C-C--DLVNRGLAYWPGD-  117 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE---------------EEECCCCC-GGGGGG---C-S-S--CSCCCCCEEECCC-
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEE---------------EEECCCCC-cccccc---c-c-c--cccccceEEEecC-
Confidence            5689999875678999998 777543               32220000 000000   0 0 0  011235566  43 


Q ss_pred             Ce----EEEEeCCCCEEEEEECCCCcEEE
Q 013362           89 DN----LLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        89 G~----LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      +.    ||+.. ..+++..+|..||++.-
T Consensus       118 g~~~~rV~v~t-~dg~l~AlDa~TG~~~W  145 (599)
T 1w6s_A          118 GKTPALILKTQ-LDGNVAALNAETGETVW  145 (599)
T ss_dssp             SSSCCEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             CcceeEEEEEc-CCCEEEEEECCCCCEEE
Confidence            66    88875 56799999999998753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=81.12  E-value=11  Score=34.68  Aligned_cols=31  Identities=3%  Similarity=0.048  Sum_probs=20.4

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCc
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGE  110 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~  110 (444)
                      .+.+++.+++.++++-...+.|+.+|+.++.
T Consensus       103 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  133 (377)
T 3dwl_C          103 ATFVRWSPNEDKFAVGSGARVISVCYFEQEN  133 (377)
T ss_dssp             EEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred             eEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence            3567777777766666678889999988775

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=81.01  E-value=5.4  Score=41.04  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=48.2

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      +.++++.++|. + ++-..++.|+.+|+.+|....+......            .        .           ...+.
T Consensus        18 ~~~~~~s~dg~-~-~~~~~d~~i~~~~~~~g~~~~~~~~~~~------------~--------~-----------~~~~~   64 (719)
T 1z68_A           18 TFFPNWISGQE-Y-LHQSADNNIVLYNIETGQSYTILSNRTM------------K--------S-----------VNASN   64 (719)
T ss_dssp             CCCCEESSSSE-E-EEECTTSCEEEEESSSCCEEEEECHHHH------------H--------T-----------TTCSE
T ss_pred             CCccEECCCCe-E-EEEcCCCCEEEEEcCCCcEEEEEccccc------------c--------c-----------cceee
Confidence            34678888883 3 3333578999999998877665432100            0        0           01246


Q ss_pred             eEEcCCCe-EEEEeC--------CCCEEEEEECCCCcE
Q 013362           83 LMKSEDDN-LLIINR--------SFETLWIMDLASGEI  111 (444)
Q Consensus        83 L~~d~dG~-LYIADa--------gnh~IrkIDl~tG~I  111 (444)
                      +++++||. |+++..        ...+||.+|+.+|+.
T Consensus        65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence            77888876 433322        257999999999976

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=80.99  E-value=17  Score=33.28  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ...+++++.+..++++=+.++.|+..|+.++...........                                   ...
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------------~~~  146 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET-----------------------------------VYS  146 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC-----------------------------------EEE
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc-----------------------------------eee
Confidence            356888884444555555678999999988765443322111                                   011


Q ss_pred             eEEc---CCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           83 LMKS---EDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        83 L~~d---~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      +.+.   .++.++++-...+.|+.+|+.++..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             EEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             eEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            2222   2345667667788899999987754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=80.92  E-value=34  Score=31.84  Aligned_cols=32  Identities=19%  Similarity=0.016  Sum_probs=25.7

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      ...+++++++.++++=...++|+.+|+.+++.
T Consensus       142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  173 (420)
T 3vl1_A          142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSN  173 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCC
T ss_pred             cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC
Confidence            35778888888777777889999999988753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=80.77  E-value=5.5  Score=41.90  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=26.5

Q ss_pred             ceeEEcCCCe-E--EEE-eCCCCEEEEEECCCCcEEEeecCC
Q 013362           81 WHLMKSEDDN-L--LII-NRSFETLWIMDLASGEIKEAVKGF  118 (444)
Q Consensus        81 ~gL~~d~dG~-L--YIA-Dagnh~IrkIDl~tG~I~TiagG~  118 (444)
                      ..+++++||. |  |.+ ..+...|+.+|+++|....+..|.
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~  363 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT  363 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC
Confidence            3456777775 2  333 356789999999998888777543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=80.58  E-value=39  Score=31.87  Aligned_cols=80  Identities=15%  Similarity=0.090  Sum_probs=53.4

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..+++++++. ++++=+..+.||..|+.++.. .++.+....            .                ...+.....
T Consensus       253 ~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~------------~----------------~~~~~~v~~  303 (380)
T 3iz6_a          253 NSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDR------------N----------------DNELPIVTS  303 (380)
T ss_dssp             CEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSS------------S----------------CCSSCSCSE
T ss_pred             EEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccccc------------c----------------ccccCceEE
Confidence            4677887775 445556677888888877643 333222110            0                001333468


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ++++++|.++++-..++.|+.||..+++..
T Consensus       304 ~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  333 (380)
T 3iz6_a          304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMV  333 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence            889999999999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	444
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.46
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.42
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.42
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.4
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.3
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.2
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.15
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.14
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.09
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.04
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.01
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.31
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.13
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.11
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.88
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.75
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.65
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.38
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.22
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.19
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.14
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.11
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	96.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.37
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.22
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	95.81
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	95.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	95.64
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.99
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	94.23
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.01
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.84
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	92.63
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	90.35
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.69
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	89.43
d1tbga_	340	beta1-subunit of the signal-transducing G protein	87.85
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	87.71
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.22
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	86.94
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	86.59
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	86.27
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	86.22
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	85.84
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	85.69
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	84.73

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=8.9e-13  Score=121.55  Aligned_cols=190  Identities=11%  Similarity=0.092  Sum_probs=116.2

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCc---cCCcchhhhhccc--------Ccc-----c-
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISK---KNNSLWAWIMEKL--------GFE-----R-   63 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~---~~~~l~g~~~~~~--------G~a-----~-   63 (444)
                      ++|.|||+|++| .|||||..||+||++|+....+.++...+....   .+.+++- . ...        +..     . 
T Consensus        23 ~~P~gvavd~dg-~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          23 TEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAV-V-RNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             SCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEE-E-TTTTEEEEEECGGGCEEEEEC
T ss_pred             CCccEEEEcCCC-CEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccc-c-ccccccceeccCCcccccccc
Confidence            479999999887 599999999999999975334444432221100   0011110 0 000        000     0 


Q ss_pred             ccCccccCCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccc
Q 013362           64 DNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDW  143 (444)
Q Consensus        64 ~a~~~~~~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~  143 (444)
                      ........|....++.|++++++.+|.+|++|..++++++++.+...+.++... ...                      
T Consensus       100 ~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~-~~~----------------------  156 (279)
T d1q7fa_         100 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS-KHL----------------------  156 (279)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT-TTC----------------------
T ss_pred             ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccc-ccc----------------------
Confidence            000012234566799999999999999999999999999999875555555321 100                      


Q ss_pred             ccccccccccccCCCccccccccc-ccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeeecc
Q 013362          144 LLHQIDSSCSLKELPYAGLISSSI-AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVA  221 (444)
Q Consensus       144 ~~~~~~~~~~~~Gip~a~~~Sgla-~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~  221 (444)
                                  ..     +.+++ ...++||++|..+++|.+++.++..+.+|+  ..|.+..|.-+++ |-++     
T Consensus       157 ------------~~-----~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g--~~g~~~~P~giavD~~G~-----  212 (279)
T d1q7fa_         157 ------------EF-----PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG--GEGITNYPIGVGINSNGE-----  212 (279)
T ss_dssp             ------------SS-----EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEES--CTTTSCSEEEEEECTTCC-----
T ss_pred             ------------cc-----cceeeeccceeEEeeeccccceeeeecCCceeeeec--ccccccCCcccccccCCe-----
Confidence                        00     12222 246689999999999999999888777763  3445555544443 3222     


Q ss_pred             cccCCccc-ceeeeeecCCCe
Q 013362          222 GGHQGSWT-DHIQRCSLLPGR  241 (444)
Q Consensus       222 ~~~~g~~~-~~i~~v~~~pGr  241 (444)
                      .++++.++ ++|+.|+ ..|+
T Consensus       213 i~Vad~~~~~~v~~f~-~~G~  232 (279)
T d1q7fa_         213 ILIADNHNNFNLTIFT-QDGQ  232 (279)
T ss_dssp             EEEEECSSSCEEEEEC-TTSC
T ss_pred             EEEEECCCCcEEEEEC-CCCC
Confidence            33466554 4577775 3465

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=6.4e-13  Score=121.35  Aligned_cols=151  Identities=11%  Similarity=0.096  Sum_probs=106.5

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.||++|+++ .|||+|+.|+++.+++......... +.                       ..          ++.|.
T Consensus        99 ~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~-~~-----------------------~~----------~~~p~  143 (260)
T d1rwia_          99 YPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVL-PF-----------------------TG----------LNDPD  143 (260)
T ss_dssp             SEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEEC-CC-----------------------CS----------CCSCC
T ss_pred             ecccccccccc-eeEeeccccccccccccccceeeee-ee-----------------------cc----------cCCcc
Confidence            69999999887 5999999999999998643322111 10                       01          78899


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +|+++++|++|++|.++++|.++|+++....++..+.-                                    +.    
T Consensus       144 ~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~------------------------------------~~----  183 (260)
T d1rwia_         144 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI------------------------------------TA----  183 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC------------------------------------CS----
T ss_pred             eeeecCCCCEeeeccccccccccccccceeeeeecccc------------------------------------CC----
Confidence            99999999999999999999999988665544331100                                    01    


Q ss_pred             ccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeec-c-cccCCcccceeeeeec
Q 013362          162 LISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAV-A-GGHQGSWTDHIQRCSL  237 (444)
Q Consensus       162 ~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~-~-~~~~g~~~~~i~~v~~  237 (444)
                       |.+++. .+++|||+|..+++|.+++..++....+...+   +..|.      .++++. | .++++..+++|++|+-
T Consensus       184 -p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~---~~~P~------~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         184 -PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG---LNTPL------AVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             -EEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS---CCCEE------EEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             -CccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC---CCCeE------EEEEeCCCCEEEEECCCCEEEEEeC
Confidence             223333 35689999999999999998877766653322   33444      444432 2 3468888999999854

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.2e-12  Score=117.97  Aligned_cols=178  Identities=13%  Similarity=0.059  Sum_probs=127.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      +|.|||+|..++.||++|.++++|.++++......++.-.                        .          +..|.
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~------------------------~----------~~~P~  123 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------N----------GSKPR  123 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------------------T----------TCCEE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC------------------------C----------CCCcc
Confidence            6999999998999999999999999999865544433211                        1          67899


Q ss_pred             eeEEcC-CCeEEEEeCCCC-EEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           82 HLMKSE-DDNLLIINRSFE-TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        82 gL~~d~-dG~LYIADagnh-~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      +|++++ +|.||++|.+.+ +|.+.+++....++++...  .                                  ..  
T Consensus       124 ~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~--~----------------------------------~~--  165 (266)
T d1ijqa1         124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN--I----------------------------------QW--  165 (266)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS--C----------------------------------SC--
T ss_pred             eEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc--c----------------------------------ce--
Confidence            999997 489999998764 8999999866676666310  0                                  00  


Q ss_pred             ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeeee
Q 013362          160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCS  236 (444)
Q Consensus       160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~  236 (444)
                         |.+++.  .++.||++|+..++|.++++.+..+.++.. +...+.      .|.......+ .+.++...+.|.+++
T Consensus       166 ---p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~-~~~~~~------~p~~lav~~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         166 ---PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLA------HPFSLAVFEDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             ---EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CTTTTS------SEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---eeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe-CCCccc------ccEEEEEECCEEEEEECCCCeEEEEE
Confidence               223333  367899999999999999999877766532 222333      3544444433 345777888999998


Q ss_pred             cCCCeee--EEEeeeCCCCcccccccc
Q 013362          237 LLPGRID--IKVNVDIPSDTELVESLQ  261 (444)
Q Consensus       237 ~~pGri~--i~v~v~~P~~~el~~p~~  261 (444)
                      ..+|.-.  |.-+..-|.++.++-|+.
T Consensus       236 ~~~g~~~~~~~~~~~~p~~i~v~~~~~  262 (266)
T d1ijqa1         236 RLTGSDVNLLAENLLSPEDMVLFHNLT  262 (266)
T ss_dssp             TTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred             CCCCcceEEEEcCCCCceEEEEECCcc
Confidence            8777533  444455689999988874

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=9.1e-13  Score=120.31  Aligned_cols=112  Identities=12%  Similarity=0.178  Sum_probs=84.3

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.||++++++ .|||+|..+++|.+++.......++..+                        .          +.+|+
T Consensus       141 ~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~~~~~~------------------------~----------~~~p~  185 (260)
T d1rwia_         141 DPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFT------------------------D----------ITAPW  185 (260)
T ss_dssp             SCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCS------------------------S----------CCSEE
T ss_pred             CcceeeecCCC-CEeeeccccccccccccccceeeeeecc------------------------c----------cCCCc
Confidence            69999999887 5999999999999999765544433211                        2          88899


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG  161 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~  161 (444)
                      +|+++++|+|||+|.++|+|.++++.++..+.+..+ . .                                  .     
T Consensus       186 gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~-~-~----------------------------------~-----  224 (260)
T d1rwia_         186 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT-G-L----------------------------------N-----  224 (260)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCC-S-C----------------------------------C-----
T ss_pred             cceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccC-C-C----------------------------------C-----
Confidence            999999999999999999999999876554433211 0 0                                  0     


Q ss_pred             ccccccc-cCCeEEEEeCCCCeEEEEeCC
Q 013362          162 LISSSIA-FQNHILLCDIVGQRIMRLNRE  189 (444)
Q Consensus       162 ~~Sgla~-~~~~LyIADT~nhRIRkvdl~  189 (444)
                      .|.+|+. .+++|||||.++|||+|++..
T Consensus       225 ~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         225 TPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            1233333 356899999999999998754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.1e-11  Score=111.35  Aligned_cols=172  Identities=12%  Similarity=0.066  Sum_probs=123.2

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|||+|..++.||++|.++++|.++++......++...                        .          +..|+
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~------------------------~----------l~~p~  125 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT------------------------G----------LVNPR  125 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------------------------S----------CSSEE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecc------------------------c----------ccCCc
Confidence            6999999988889999999999999999876555555432                        1          77899


Q ss_pred             eeEEcCC-CeEEEEeCCC--CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           82 HLMKSED-DNLLIINRSF--ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        82 gL~~d~d-G~LYIADagn--h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      +|++++. |.||+++.+.  .+|++.+++....++++..  ..                                  +  
T Consensus       126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~--~~----------------------------------~--  167 (263)
T d1npea_         126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD--NL----------------------------------G--  167 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT--TC----------------------------------S--
T ss_pred             EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee--cc----------------------------------c--
Confidence            9999975 8999999874  4799999975555555421  00                                  0  


Q ss_pred             cccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-cccCCcccceeeee
Q 013362          159 YAGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRC  235 (444)
Q Consensus       159 ~a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v  235 (444)
                         .|.+|+.  .++.||++|...++|.+++++++.+.++- .+         +..|.+.....+ .+.++...+.|.++
T Consensus       168 ---~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~-~~---------~~~P~~lav~~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         168 ---LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EG---------LQYPFAVTSYGKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             ---CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-EC---------CCSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             ---ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE-CC---------CCCcEEEEEECCEEEEEECCCCEEEEE
Confidence               1233443  46789999999999999999988887762 22         223555544444 44688889999999


Q ss_pred             ecCCCeeeEEE----eeeCCCCcccccc
Q 013362          236 SLLPGRIDIKV----NVDIPSDTELVES  259 (444)
Q Consensus       236 ~~~pGri~i~v----~v~~P~~~el~~p  259 (444)
                      +...|+.. ++    +-.-|.|+..+.|
T Consensus       235 ~~~~g~~~-~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         235 DLAISKEM-DTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             ETTTTEEE-EEECCSSCCCCCCEEEECS
T ss_pred             ECCCCccc-eEECCCCCCCcceEEEeCC
Confidence            99888643 22    2244666666654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=7.4e-11  Score=108.48  Aligned_cols=159  Identities=10%  Similarity=0.085  Sum_probs=107.4

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      ..|.+++++++| .+|++|..++++.+++.....+.++...                       ..          +..|
T Consensus       114 ~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~~~~~~g~~-----------------------~~----------~~~~  159 (279)
T d1q7fa_         114 QHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNVLHKFGCS-----------------------KH----------LEFP  159 (279)
T ss_dssp             SCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEEEEEECT-----------------------TT----------CSSE
T ss_pred             cccceeccccCC-cEEEEeeccceeeEeccCCceeeccccc-----------------------cc----------cccc
Confidence            368999999887 6999999999999999755555554221                       12          7889


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      ++++++++|+||++|..+++|+++|++...+.+++.  .      |.+                           ..   
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~--~------g~~---------------------------~~---  201 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG--E------GIT---------------------------NY---  201 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC--T------TTS---------------------------CS---
T ss_pred             ceeeeccceeEEeeeccccceeeeecCCceeeeecc--c------ccc---------------------------cC---
Confidence            999999999999999999999999986544555531  1      110                           01   


Q ss_pred             ccccccc-ccCCeEEEEeCCC-CeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecccccCCcccceeeeeecC
Q 013362          161 GLISSSI-AFQNHILLCDIVG-QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLL  238 (444)
Q Consensus       161 ~~~Sgla-~~~~~LyIADT~n-hRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~  238 (444)
                        |.+++ ...++|||||..+ +||.+++.+...+.+|.-.  ...+.|+.+++     -..|+.+-...+|+|+.+...
T Consensus       202 --P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~--~~~~~p~~vav-----~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         202 --PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK--VKHAQCFDVAL-----MDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             --EEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES--SCCSCEEEEEE-----ETTTEEEEEETTTEEEEEECS
T ss_pred             --CcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCC--CCCCCEeEEEE-----eCCCcEEEEeCCCeEEEEEee
Confidence              22333 3466899999865 6899999876667777422  12233443332     112333333468999998765


Q ss_pred             CC
Q 013362          239 PG  240 (444)
Q Consensus       239 pG  240 (444)
                      ..
T Consensus       273 ~~  274 (279)
T d1q7fa_         273 QL  274 (279)
T ss_dssp             CC
T ss_pred             ee
Confidence            44

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.20  E-value=4.6e-10  Score=106.24  Aligned_cols=167  Identities=10%  Similarity=0.075  Sum_probs=103.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.||+++++++.|||||.. |.|+++++..+ ..+++.....               |    ..          |+.|.
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~-~~i~~~~~~g~-~~~~~~~~~~---------------g----~~----------~~~pn  120 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMR-LGLLVVQTDGT-FEEIAKKDSE---------------G----RR----------MQGCN  120 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETT-TEEEEEETTSC-EEECCSBCTT---------------S----CB----------CBCCC
T ss_pred             cceeEEEeCCCCEEEEEECC-CeEEEEeCCCc-EEEEEecccc---------------c----cc----------cCCCc
Confidence            59999999999999999976 67999997555 4454433211               1    12          89999


Q ss_pred             eeEEcCCCeEEEEeCCC---------------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccc
Q 013362           82 HLMKSEDDNLLIINRSF---------------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLH  146 (444)
Q Consensus        82 gL~~d~dG~LYIADagn---------------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~  146 (444)
                      +++++++|+|||+|...               ++||+++++ |++..++.+...+                         
T Consensus       121 dl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~p-------------------------  174 (314)
T d1pjxa_         121 DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP-------------------------  174 (314)
T ss_dssp             EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE-------------------------
T ss_pred             EEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCccee-------------------------
Confidence            99999999999999754               489999875 6776666422110                         


Q ss_pred             cccccccccCCCcccccccc-cccCCeEEEEeCCCCeEEEEeCC-CCeEEEee-ecc--ccccCCceeeeeccceeee-c
Q 013362          147 QIDSSCSLKELPYAGLISSS-IAFQNHILLCDIVGQRIMRLNRE-SGVCSNFQ-FSN--FAILGLPYWFAFPLERVYA-V  220 (444)
Q Consensus       147 ~~~~~~~~~Gip~a~~~Sgl-a~~~~~LyIADT~nhRIRkvdl~-tG~vST~~-fsg--~g~lg~P~~l~~PL~~v~~-~  220 (444)
                              .|+.+    +.- ......||++|+.+++|+++++. .|.+++-. +..  ....+.      |-+.+++ .
T Consensus       175 --------NGi~~----~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~------pdGiavD~~  236 (314)
T d1pjxa_         175 --------NGIAV----RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG------ADGMDFDED  236 (314)
T ss_dssp             --------EEEEE----EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE------EEEEEEBTT
T ss_pred             --------eeeEE----CCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc------ceeeEEecC
Confidence                    11111    000 01123699999999999999865 44554321 111  112233      3333332 2


Q ss_pred             ccc-cCCcccceeeeeecCCCeee
Q 013362          221 AGG-HQGSWTDHIQRCSLLPGRID  243 (444)
Q Consensus       221 ~~~-~~g~~~~~i~~v~~~pGri~  243 (444)
                      |+. ++.....+|++++...|++.
T Consensus       237 GnlyVa~~~~g~I~~~dp~~g~~~  260 (314)
T d1pjxa_         237 NNLLVANWGSSHIEVFGPDGGQPK  260 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTCBSCS
T ss_pred             CcEEEEEcCCCEEEEEeCCCCEEE
Confidence            232 24334567777777666543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=6.6e-10  Score=103.63  Aligned_cols=120  Identities=12%  Similarity=0.098  Sum_probs=93.7

Q ss_pred             CcceEEEecCCCEEEEEeCC--CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSE--NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTe--NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      +|.+|++|+..+.||+.|.+  +++|-++++.....++++..                        .          +..
T Consensus       123 ~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~------------------------~----------~~~  168 (263)
T d1npea_         123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD------------------------N----------LGL  168 (263)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT------------------------T----------CSC
T ss_pred             CCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee------------------------c----------ccc
Confidence            69999999999999999976  44688888753333333211                        1          778


Q ss_pred             cceeEEcCC-CeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           80 PWHLMKSED-DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        80 P~gL~~d~d-G~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      |.+|++|.. +.||++|.+.++|+++|++.+..++++.|...                                      
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~--------------------------------------  210 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY--------------------------------------  210 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS--------------------------------------
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC--------------------------------------
Confidence            999999854 78999999999999999987777777643211                                      


Q ss_pred             cccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362          159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQ  197 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~  197 (444)
                          |.+|+.+++.||++|..+++|.++|..+|...++-
T Consensus       211 ----P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         211 ----PFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             ----EEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ----cEEEEEECCEEEEEECCCCEEEEEECCCCccceEE
Confidence                23567788999999999999999999998876553

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.3e-10  Score=103.16  Aligned_cols=122  Identities=16%  Similarity=0.268  Sum_probs=94.5

Q ss_pred             CcceEEEecCCCEEEEEeCCC-CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSEN-HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeN-HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.+|++|+..+.||++|.++ .+|.|+++....++++...+                                  +..|
T Consensus       121 ~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~----------------------------------~~~p  166 (266)
T d1ijqa1         121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN----------------------------------IQWP  166 (266)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS----------------------------------CSCE
T ss_pred             CcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc----------------------------------ccee
Confidence            699999999888999999865 58999998655555554321                                  7779


Q ss_pred             ceeEEcCC-CeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKSED-DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d~d-G~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      .+|++|.. +.||++|++.++|+++|++.....++..+...                                    .+ 
T Consensus       167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~------------------------------------~~-  209 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR------------------------------------LA-  209 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT------------------------------------TS-
T ss_pred             eEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCc------------------------------------cc-
Confidence            99999964 78999999999999999986666666532111                                    01 


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~  196 (444)
                        .|-+|+..++.||++|..+++|.+++..+|.-.+.
T Consensus       210 --~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         210 --HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             --SEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             --ccEEEEEECCEEEEEECCCCeEEEEECCCCcceEE
Confidence              13457778899999999999999999988865443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.09  E-value=3.9e-10  Score=106.70  Aligned_cols=120  Identities=15%  Similarity=0.173  Sum_probs=82.9

Q ss_pred             CcceEEEecCCC----EEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCC
Q 013362            2 RPAASFYHKDDD----CLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS   76 (444)
Q Consensus         2 ~P~GIa~D~~g~----~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~   76 (444)
                      .|.||+++++++    .|||+|+.+++|+++|+. .+.+..--           +|  . .              +....
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~-----------~~--~-~--------------~~~~~  224 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK-----------VW--G-H--------------IPGTH  224 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE-----------EE--E-E--------------CCCCS
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceee-----------EE--E-E--------------ccccc
Confidence            588999988775    799999999999999854 33332110           00  0 0              00111


Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCCccceeecceehhhhhhhhhcCCccccccccccccccc
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLK  155 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~  155 (444)
                      ...|-++++|.+|+||||+.++++|++||+++|++. ++..+...+.                                 
T Consensus       225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t---------------------------------  271 (314)
T d1pjxa_         225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPS---------------------------------  271 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEE---------------------------------
T ss_pred             cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEE---------------------------------
Confidence            456899999999999999999999999999988753 3432222111                                 


Q ss_pred             CCCcccccccccccCCeEEEEeCCCCeEEEEeCC
Q 013362          156 ELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE  189 (444)
Q Consensus       156 Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~  189 (444)
                      .+++       ...++.|||+|+.+++|.++++.
T Consensus       272 ~~af-------g~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         272 NLHF-------KPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEE-------CTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEE-------eCCCCEEEEEECCCCcEEEEECC
Confidence            0111       12345799999999999999854

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.08  E-value=1.4e-09  Score=102.37  Aligned_cols=182  Identities=12%  Similarity=0.017  Sum_probs=114.4

Q ss_pred             CcceEEEecCCCEEEEEeCCC----CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSEN----HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeN----HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      .|.||+++++| .||||+..+    ..|.+++..++.+.++.....                      .          .
T Consensus        83 ~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------------~----------~  129 (319)
T d2dg1a1          83 NPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS----------------------T----------A  129 (319)
T ss_dssp             SEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS----------------------S----------C
T ss_pred             CeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCceeeeeccCCC----------------------c----------c
Confidence            58999999988 699999764    456777766666555543211                      1          6


Q ss_pred             CCcceeEEcCCCeEEEEeCCCC------EEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccccc
Q 013362           78 IFPWHLMKSEDDNLLIINRSFE------TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSS  151 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh------~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~  151 (444)
                      +.|.+++++.+|+||++|..++      .+++++++.+.++.+..+...                               
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~-------------------------------  178 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV-------------------------------  178 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS-------------------------------
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccce-------------------------------
Confidence            6788999999999999998754      599999887778777642111                               


Q ss_pred             ccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCC--eEEEeee---ccccccCCceeeeeccceeee-ccc-cc
Q 013362          152 CSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESG--VCSNFQF---SNFAILGLPYWFAFPLERVYA-VAG-GH  224 (444)
Q Consensus       152 ~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG--~vST~~f---sg~g~lg~P~~l~~PL~~v~~-~~~-~~  224 (444)
                        +.|+++       ...++.||++|+.+++|++++++..  ..+....   ...+.++.      |-+.+++ .|+ ++
T Consensus       179 --pnGia~-------s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~------PdGl~vD~~G~l~V  243 (319)
T d2dg1a1         179 --ANGIAL-------STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG------PDSCCIDSDDNLYV  243 (319)
T ss_dssp             --EEEEEE-------CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE------EEEEEEBTTCCEEE
T ss_pred             --eeeeee-------ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccc------eeeeeEcCCCCEEE
Confidence              112221       2346679999999999999987632  2332211   11112222      4455553 333 34


Q ss_pred             CCcccceeeeeecCCCeeeEEEeeeCCCCccccccccccee
Q 013362          225 QGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCI  265 (444)
Q Consensus       225 ~g~~~~~i~~v~~~pGri~i~v~v~~P~~~el~~p~~e~ci  265 (444)
                      ++..+.+|++|+. .|++.  -.|.+|..-...-+..-+|-
T Consensus       244 a~~~~g~V~~~~p-~G~~l--~~i~~P~~~~~~~~~~~~~~  281 (319)
T d2dg1a1         244 AMYGQGRVLVFNK-RGYPI--GQILIPGRDEGHMLRSTHPQ  281 (319)
T ss_dssp             EEETTTEEEEECT-TSCEE--EEEECTTGGGTCSCBCCEEE
T ss_pred             EEcCCCEEEEECC-CCcEE--EEEeCCCcCCCcCceeeeEE
Confidence            6666788999986 57654  24567764332223333443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.04  E-value=2e-09  Score=99.63  Aligned_cols=161  Identities=8%  Similarity=-0.067  Sum_probs=109.5

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      |.|+|++++| .|||+|..+|+|++++. +|..++++..                                   -..|++
T Consensus        30 ~e~iAv~pdG-~l~vt~~~~~~I~~i~p-~g~~~~~~~~-----------------------------------~~~~~g   72 (302)
T d2p4oa1          30 LENLASAPDG-TIFVTNHEVGEIVSITP-DGNQQIHATV-----------------------------------EGKVSG   72 (302)
T ss_dssp             EEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEEEC-----------------------------------SSEEEE
T ss_pred             cCCEEECCCC-CEEEEeCCCCEEEEEeC-CCCEEEEEcC-----------------------------------CCCcce
Confidence            7799999998 59999999999999995 4666655432                                   234789


Q ss_pred             eEEcCCCeEEEEeCCCCEEEEEECCC--CcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362           83 LMKSEDDNLLIINRSFETLWIMDLAS--GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA  160 (444)
Q Consensus        83 L~~d~dG~LYIADagnh~IrkIDl~t--G~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a  160 (444)
                      |+++++|+|||++.++++++++++.+  +.++.++.- +.                                  .+.   
T Consensus        73 la~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------------------------~~~---  114 (302)
T d2p4oa1          73 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-PD----------------------------------AIF---  114 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-TT----------------------------------CSC---
T ss_pred             EEEcCCCCeEEEecCCceEEEEEecccccceeecccc-CC----------------------------------ccc---
Confidence            99999999999999999999888653  455555421 00                                  001   


Q ss_pred             ccccccc-ccCCeEEEEeCCCCeEEEEeCCCCeEEEeeecccc-ccCCceeeeeccceeeecc-cccCCcccceeeeeec
Q 013362          161 GLISSSI-AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFA-ILGLPYWFAFPLERVYAVA-GGHQGSWTDHIQRCSL  237 (444)
Q Consensus       161 ~~~Sgla-~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g-~lg~P~~l~~PL~~v~~~~-~~~~g~~~~~i~~v~~  237 (444)
                        +.+++ ...+.+|++|..+.+|.++++.++....+...... .......+..|-...++.. .++.++...+|.++++
T Consensus       115 --~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~  192 (302)
T d2p4oa1         115 --LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPV  192 (302)
T ss_dssp             --EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEB
T ss_pred             --cceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccc
Confidence              12222 34678999999999999999999988776544322 1112222223333333333 3457778888888876


Q ss_pred             CCC
Q 013362          238 LPG  240 (444)
Q Consensus       238 ~pG  240 (444)
                      ..+
T Consensus       193 ~~~  195 (302)
T d2p4oa1         193 DST  195 (302)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=3.9e-09  Score=99.33  Aligned_cols=153  Identities=8%  Similarity=0.111  Sum_probs=105.7

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362            3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH   82 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g   82 (444)
                      ..|+++|++|+ ||++|..+++|+|+++.++.+.++....                                  ...|.+
T Consensus        42 lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~----------------------------------~~~p~g   86 (319)
T d2dg1a1          42 LEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSH----------------------------------KANPAA   86 (319)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECS----------------------------------SSSEEE
T ss_pred             cEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCC----------------------------------CCCeeE
Confidence            36999999884 9999999999999998776554432111                                  224779


Q ss_pred             eEEcCCCeEEEEeCC----CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           83 LMKSEDDNLLIINRS----FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        83 L~~d~dG~LYIADag----nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      |+++.+|.||||+.+    ...|.+++..++.+.++..+.....                                    
T Consensus        87 la~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------------------------  130 (319)
T d2dg1a1          87 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY------------------------------------  130 (319)
T ss_dssp             EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC------------------------------------
T ss_pred             EEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCccc------------------------------------
Confidence            999999999999875    4579999998888877764222100                                    


Q ss_pred             cccccccc-cccCCeEEEEeCCCCe------EEEEeCCCCeEEEeeeccccccCCceeeeeccceeeec-c--cccCCcc
Q 013362          159 YAGLISSS-IAFQNHILLCDIVGQR------IMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAV-A--GGHQGSW  228 (444)
Q Consensus       159 ~a~~~Sgl-a~~~~~LyIADT~nhR------IRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~-~--~~~~g~~  228 (444)
                         .+..+ ....++||+.|..+++      |.+++.+++.+..+..          -+..|=+++++. +  .+++++.
T Consensus       131 ---~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~----------~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         131 ---CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ----------NISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             ---CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE----------EESSEEEEEECTTSSEEEEEEGG
T ss_pred             ---CCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee----------ccceeeeeeeccccceEEEeccc
Confidence               01111 2346789999987654      8888888887776521          122343444432 2  3568899


Q ss_pred             cceeeeeecCC
Q 013362          229 TDHIQRCSLLP  239 (444)
Q Consensus       229 ~~~i~~v~~~p  239 (444)
                      .++|.++++..
T Consensus       198 ~~~I~~~d~~~  208 (319)
T d2dg1a1         198 ANRLHRIALED  208 (319)
T ss_dssp             GTEEEEEEECT
T ss_pred             CCceEEEEEcC
Confidence            99999998753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.87  E-value=2.8e-08  Score=91.73  Aligned_cols=126  Identities=14%  Similarity=0.149  Sum_probs=89.8

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC--CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      +|.|++++++| +|||++..++.++++++.  .++++.++...                       .          ...
T Consensus        69 ~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~----------~~~  114 (302)
T d2p4oa1          69 KVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLP-----------------------D----------AIF  114 (302)
T ss_dssp             EEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECT-----------------------T----------CSC
T ss_pred             CcceEEEcCCC-CeEEEecCCceEEEEEecccccceeeccccC-----------------------C----------ccc
Confidence            58999999998 599999999999998863  23344333221                       1          556


Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      |.+++++.+|++|++|..+++||++|+.++....+........                            .......+ 
T Consensus       115 ~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~-  165 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR----------------------------SNSESVFP-  165 (302)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC----------------------------SSTTCCSC-
T ss_pred             cceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccce----------------------------eeccCccc-
Confidence            8899999999999999999999999999887665543111000                            00000111 


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCe
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGV  192 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~  192 (444)
                        .+.++...++.||++|+.+++|++++.....
T Consensus       166 --~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~  196 (302)
T d2p4oa1         166 --AANGLKRFGNFLYVSNTEKMLLLRIPVDSTD  196 (302)
T ss_dssp             --SEEEEEEETTEEEEEETTTTEEEEEEBCTTS
T ss_pred             --ccccccccCCceeeecCCCCeEEeccccccc
Confidence              1345566788999999999999999987543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.31  E-value=9e-06  Score=70.12  Aligned_cols=107  Identities=16%  Similarity=0.217  Sum_probs=76.3

Q ss_pred             EEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCe-EE
Q 013362           14 CLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LL   92 (444)
Q Consensus        14 ~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~-LY   92 (444)
                      .+||++++++.|+.+|+.++++.-....|                                   ..|++|+++++|. ||
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-----------------------------------~~p~~va~spdG~~l~   47 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVG-----------------------------------SNPMGAVISPDGTKVY   47 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-----------------------------------SSEEEEEECTTSSEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECC-----------------------------------CCceEEEEeCCCCEEE
Confidence            69999999999999999998754332221                                   1378999999875 89


Q ss_pred             EEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccccccccCCe
Q 013362           93 IINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNH  172 (444)
Q Consensus        93 IADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla~~~~~  172 (444)
                      |++..+++|+.||+.+++......+...+.                                 ++.       +...++.
T Consensus        48 v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~---------------------------------~~~-------~~~~~~~   87 (301)
T d1l0qa2          48 VANAHSNDVSIIDTATNNVIATVPAGSSPQ---------------------------------GVA-------VSPDGKQ   87 (301)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSSSEE---------------------------------EEE-------ECTTSSE
T ss_pred             EEECCCCEEEEEECCCCceeeeeecccccc---------------------------------ccc-------ccccccc
Confidence            999999999999999987543221111110                                 111       1234567


Q ss_pred             EEEEeCCCCeEEEEeCCCCeEEE
Q 013362          173 ILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       173 LyIADT~nhRIRkvdl~tG~vST  195 (444)
                      +|++...+..++.++..++....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccccccceeeecccccceeee
Confidence            88888888888888888887544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.20  E-value=3.7e-05  Score=66.12  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=63.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEE-EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~Vt-TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|.|++++++|+.|||++..++.|+.+|+.++... ++.+                                    ...|
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~------------------------------------~~~~   76 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------------------------------------GSSP   76 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------------------------------------SSSE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec------------------------------------cccc
Confidence            69999999999999999999999999999887543 2211                                    2246


Q ss_pred             ceeEEcCCC-eEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           81 WHLMKSEDD-NLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        81 ~gL~~d~dG-~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      .+++++.++ .+|++......++.++..+++.....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV  112 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccccccceeeecccccceeeeec
Confidence            678887775 58999999999999999998765544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.13  E-value=5.8e-06  Score=76.80  Aligned_cols=94  Identities=11%  Similarity=0.020  Sum_probs=65.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.|++++++++.||++||.+++|.++++.... ..+.+.  .     .+  |. .               .+.....|-
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~-~~~~~~--~-----~~--~~-~---------------~~~~~g~pd  202 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGK--A-----EV--FI-D---------------STGIKGGMD  202 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSC--C-----EE--EE-E---------------CTTSSSEEE
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccc-cccccc--e-----EE--Ee-c---------------cCccccccc
Confidence            488999999999999999999999999863210 001111  0     00  00 0               001145699


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccc
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKV  121 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~  121 (444)
                      ++++|.+|+||||..+.++|+++|++...+..+.-..+.+
T Consensus       203 G~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~  242 (295)
T d2ghsa1         203 GSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQT  242 (295)
T ss_dssp             EEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBE
T ss_pred             ceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCce
Confidence            9999999999999999999999999755566665433333

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.11  E-value=3.2e-05  Score=71.61  Aligned_cols=74  Identities=12%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      .|-.||++++.||++|..+++|.++|+.++.++++.-..                                    .|..+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~------------------------------------~~~~i   64 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPF------------------------------------MGSAL   64 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS------------------------------------CEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCC------------------------------------CcEEE
Confidence            477899988899999999999999999999887653110                                    14467


Q ss_pred             EEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           84 MKSEDDNLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        84 ~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      +..++|.|+||..  +.|.++|+.+|++++++
T Consensus        65 ~~~~dg~l~va~~--~gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          65 AKISDSKQLIASD--DGLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEETTEEEEEET--TEEEEEETTTCCEEEEE
T ss_pred             EEecCCCEEEEEe--CccEEeecccceeeEEe
Confidence            7777899999974  68999999999999887

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=8.4e-05  Score=65.02  Aligned_cols=125  Identities=9%  Similarity=-0.040  Sum_probs=83.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|++|+++|+|+.||++...++.|+..++..+ ...++.+.-                      ..          -..|
T Consensus        38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~----------------------~~----------~~~p   85 (333)
T d1ri6a_          38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES----------------------AL----------PGSL   85 (333)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----------------------EC----------SSCC
T ss_pred             CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec----------------------cc----------CCCc
Confidence            58999999999999999999999998876432 111121110                      01          3458


Q ss_pred             ceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362           81 WHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY  159 (444)
Q Consensus        81 ~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~  159 (444)
                      .+|++++||. ||+++..+.+|+.++...+...........                              .    ..|.
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~------------------------------~----~~~~  131 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG------------------------------L----DGCH  131 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC------------------------------C----TTBC
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCC------------------------------C----ccce
Confidence            9999999865 999999999999988776654433210000                              0    0111


Q ss_pred             ccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                      +.   .+...++.+|+++....+|+.++..+.....
T Consensus       132 ~v---~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_         132 SA---NISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CC---EECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             EE---EeeecceeeeccccccceeeEEEeccCCcce
Confidence            11   1234567899999999999998887655433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.81  E-value=0.00024  Score=67.14  Aligned_cols=79  Identities=9%  Similarity=0.017  Sum_probs=59.6

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      +|++++++|+|+.||++|.+.++|+.++.. ++.+..+...- .              .     ..          =..|
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~-~--------------~-----~~----------g~gP  195 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-A--------------P-----DP----------GDHP  195 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-C--------------S-----ST----------TCCE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecccee-e--------------c-----CC----------CCce
Confidence            689999999999999999999999998754 34443321110 0              0     00          2468


Q ss_pred             ceeEEcCCC-eEEEEeCCCCEEEEEECCCCc
Q 013362           81 WHLMKSEDD-NLLIINRSFETLWIMDLASGE  110 (444)
Q Consensus        81 ~gL~~d~dG-~LYIADagnh~IrkIDl~tG~  110 (444)
                      .+++++++| .+|+++...++|..++.+++.
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            999999986 499999999999999987664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.75  E-value=0.00038  Score=60.24  Aligned_cols=85  Identities=12%  Similarity=0.067  Sum_probs=62.2

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++|+.|||+.++++.|+.+|+.++.+..-......                   ...          ...|+
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~-------------------~~~----------~~~~~   85 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-------------------EER----------VKSLF   85 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-------------------TEE----------EECTT
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC-------------------ccc----------cccee
Confidence            4889999999999999999999999999998876543322111                   001          44577


Q ss_pred             eeEEcCCC-eEEEEeC-----------CCCEEEEEECCCCcEEEee
Q 013362           82 HLMKSEDD-NLLIINR-----------SFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        82 gL~~d~dG-~LYIADa-----------gnh~IrkIDl~tG~I~Tia  115 (444)
                      +++++++| .+|++..           ...+++.+|..++.+....
T Consensus        86 ~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  131 (337)
T d1pbyb_          86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF  131 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE
T ss_pred             eEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec
Confidence            88888874 5777764           4567888888888765444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.65  E-value=0.0011  Score=57.47  Aligned_cols=73  Identities=10%  Similarity=0.200  Sum_probs=55.1

Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEECCCCeEE-EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            5 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         5 GIa~D~~g~~LYVADTeNHaIRkIDl~tg~Vt-TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      |+|++++++.|+++.. .+.|..+|+.++++. |+.-.+                                  =..|.+|
T Consensus         1 g~a~~~~~~~l~~~~~-~~~v~v~D~~t~~~~~t~~~~~----------------------------------~~~p~~l   45 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNY-PNNLHVVDVASDTVYKSCVMPD----------------------------------KFGPGTA   45 (346)
T ss_dssp             CCCCCTTCEEEEEEET-TTEEEEEETTTTEEEEEEECSS----------------------------------CCSSCEE
T ss_pred             CccCCCCCcEEEEEcC-CCEEEEEECCCCCEEEEEEcCC----------------------------------CCCcceE
Confidence            6788888866665555 568999999998753 332111                                  1237789


Q ss_pred             EEcCCC-eEEEEeCCCCEEEEEECCCCcEE
Q 013362           84 MKSEDD-NLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        84 ~~d~dG-~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ++++|| .|||++..+++|..||+.++++.
T Consensus        46 ~~spDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_          46 MMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence            999886 48999999999999999999765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.38  E-value=0.012  Score=50.29  Aligned_cols=69  Identities=14%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             EEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCe-EEE
Q 013362           15 LYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLI   93 (444)
Q Consensus        15 LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~-LYI   93 (444)
                      .+|+-++.+.|+.+|+.++.+......+..                                -..|.++++++||. |||
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~--------------------------------~~~~~~i~~spDg~~l~v   50 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADA--------------------------------GPTPMVPMVAPGGRIAYA   50 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTC--------------------------------TTCCCCEEECTTSSEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCC--------------------------------CCCccEEEECCCCCEEEE
Confidence            455566678999999988765432221111                                23478899999875 889


Q ss_pred             EeCCCCEEEEEECCCCcEEEee
Q 013362           94 INRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        94 ADagnh~IrkIDl~tG~I~Tia  115 (444)
                      +...++.|++||+.+|++..-.
T Consensus        51 ~~~~~~~v~v~D~~t~~~~~~~   72 (337)
T d1pbyb_          51 TVNKSESLVKIDLVTGETLGRI   72 (337)
T ss_dssp             EETTTTEEEEEETTTCCEEEEE
T ss_pred             EECCCCeEEEEECCCCcEEEEE
Confidence            9999999999999999876443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.25  E-value=0.0061  Score=58.23  Aligned_cols=128  Identities=11%  Similarity=-0.010  Sum_probs=79.5

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEec--cCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY--PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVA--GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|++++|+|+|+.||++.. .+.|+.+|+.++....++  ..|                                   ..
T Consensus        63 ~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~-----------------------------------~~  106 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIG-----------------------------------SE  106 (432)
T ss_dssp             CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECC-----------------------------------SE
T ss_pred             CeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecC-----------------------------------CC
Confidence            5899999999999999975 478999998766432221  111                                   11


Q ss_pred             cceeE----EcCCC-eEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362           80 PWHLM----KSEDD-NLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL  154 (444)
Q Consensus        80 P~gL~----~d~dG-~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~  154 (444)
                      |.+++    +++|| .||++....+.|+.||..++++.....+......                .         ....+
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~----------------~---------~~~~~  161 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD----------------E---------QEYHP  161 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT----------------T---------CCEES
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccc----------------c---------eeccC
Confidence            22222    23456 4899999999999999999987654432211000                0         00011


Q ss_pred             cCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeE
Q 013362          155 KELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC  193 (444)
Q Consensus       155 ~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v  193 (444)
                      .+-+.+..   ....+..+|++-...+.|..++..++..
T Consensus       162 ~~~~~~v~---~s~dg~~~~vs~~~~~~i~~~d~~~~~~  197 (432)
T d1qksa2         162 EPRVAAIL---ASHYRPEFIVNVKETGKILLVDYTDLNN  197 (432)
T ss_dssp             CCCEEEEE---ECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             CCceeEEE---ECCCCCEEEEEEccCCeEEEEEccCCCc
Confidence            11111100   1124567899999999999999887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.22  E-value=0.0009  Score=63.03  Aligned_cols=143  Identities=11%  Similarity=-0.001  Sum_probs=81.0

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeE---EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL---ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI   78 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V---tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln   78 (444)
                      .|.++++++++..+||+....+.|..+++..+..   .++......            ..........      ......
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~------~~~~~~  255 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI------------PPGIPDRDPE------TGKGLY  255 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS------------CTTCCCBCTT------TSSBSE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc------------cccccccccc------cccccC
Confidence            6899999999999999999999999988765432   222110000            0000000000      011256


Q ss_pred             CcceeEEcCCC-eEEEEeCCCCE-----EEEEECC-CCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccccc
Q 013362           79 FPWHLMKSEDD-NLLIINRSFET-----LWIMDLA-SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSS  151 (444)
Q Consensus        79 ~P~gL~~d~dG-~LYIADagnh~-----IrkIDl~-tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~  151 (444)
                      .|.+|.++++| .||++.++.+.     |..++.. +|.+.....-....                           ..+
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---------------------------~~G  308 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP---------------------------TSG  308 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS---------------------------SCC
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE---------------------------cCC
Confidence            67889999886 59999987654     5554432 34443322100000                           001


Q ss_pred             ccccCCCcccccccccc-cCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362          152 CSLKELPYAGLISSSIA-FQNHILLCDIVGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       152 ~~~~Gip~a~~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~vST~  196 (444)
                      ..+.++.       ++. .+..||+|+...+.|..++++......+
T Consensus       309 ~~p~~i~-------~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~  347 (365)
T d1jofa_         309 GHSNAVS-------PCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV  347 (365)
T ss_dssp             TTCCCEE-------ECTTCTTEEEEECSSSCEEEEEEEETTEEEEE
T ss_pred             CCccEEE-------ecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEE
Confidence            1111211       122 3567999999999999887776655444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.19  E-value=0.0013  Score=61.74  Aligned_cols=121  Identities=12%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             CcceEEEecCC-CEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDD-DCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g-~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      +|..+.++.+. +.+||+-++++.|+.+|+.++.+ .|+.+ |                                   ..
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~-g-----------------------------------~~   63 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-G-----------------------------------YA   63 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEEC-C-----------------------------------SS
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeC-C-----------------------------------CC
Confidence            34555554443 35678899999999999998865 44432 1                                   12


Q ss_pred             cceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeec---CCccceeecceehhhhhhhhhcCCccccccccccccccc
Q 013362           80 PWHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVK---GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLK  155 (444)
Q Consensus        80 P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~Tiag---G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~  155 (444)
                      |.+|++++||. ||++.. .+.|++||+.|++...++.   +.. .                                 .
T Consensus        64 ~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i~~~~~-~---------------------------------~  108 (426)
T d1hzua2          64 VHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIKIGIE-A---------------------------------R  108 (426)
T ss_dssp             EEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEECCSE-E---------------------------------E
T ss_pred             eeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEEeCCCC-C---------------------------------c
Confidence            67899998875 788875 4799999999997543331   110 0                                 0


Q ss_pred             CCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362          156 ELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       156 Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~  196 (444)
                      +.+++..   ...++..||++....+.|+.+|.+++.+...
T Consensus       109 ~~~~s~~---~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~  146 (426)
T d1hzua2         109 SVESSKF---KGYEDRYTIAGAYWPPQFAIMDGETLEPKQI  146 (426)
T ss_dssp             EEEECCS---TTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred             ceEEeee---ecCCCCEEEEeecCCCeEEEEcCCccceeEE
Confidence            1111000   1134667888888888888888888876543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.011  Score=55.04  Aligned_cols=132  Identities=11%  Similarity=-0.046  Sum_probs=80.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEec--cCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY--PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVA--GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|.+++|+|+|+.||++.. .+.||.+|+.++....++  ..+..             ..+.                  
T Consensus        63 ~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i~~~~~-------------~~~~------------------  110 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIKIGIE-------------ARSV------------------  110 (426)
T ss_dssp             SEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEECCSE-------------EEEE------------------
T ss_pred             CeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEEeCCCC-------------Ccce------------------
Confidence            5899999999999999975 579999999888644332  11100             0000                  


Q ss_pred             cceeEEcCCC-eEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362           80 PWHLMKSEDD-NLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP  158 (444)
Q Consensus        80 P~gL~~d~dG-~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip  158 (444)
                      ++.+++.+|| .||++....+.++.+|..++.+..+..+.......                         ......+.+
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~  165 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT-------------------------QTYHPEPRV  165 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS-------------------------CCEESCCCE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc-------------------------eeecCCCce
Confidence            1122233455 58999999999999999999876655332211000                         000111111


Q ss_pred             cccccccccccCCeEEEEeCCCCeEEEEeCCCCeE
Q 013362          159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC  193 (444)
Q Consensus       159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v  193 (444)
                      ...   .....+..+++++..+.+|..++..++..
T Consensus       166 ~~i---~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  197 (426)
T d1hzua2         166 AAI---IASHEHPEFIVNVKETGKVLLVNYKDIDN  197 (426)
T ss_dssp             EEE---EECSSSSEEEEEETTTTEEEEEECSSSSS
T ss_pred             eEE---EECCCCCEEEEecCCCCeEEEEEeccccc
Confidence            100   11234567888898889998888776653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.11  E-value=0.001  Score=57.61  Aligned_cols=67  Identities=12%  Similarity=0.096  Sum_probs=50.9

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      .|.+++++++|..|||++..++.|+.+|+.++.+.-....+..                  ....          ...|+
T Consensus        41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~------------------~~~~----------~~~~~   92 (346)
T d1jmxb_          41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV------------------PGEV----------GRSMY   92 (346)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS------------------TTEE----------EECSS
T ss_pred             CcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc------------------cccc----------CCceE
Confidence            5899999999999999999999999999999876533222211                  0011          55689


Q ss_pred             eeEEcCCC-eEEEEeC
Q 013362           82 HLMKSEDD-NLLIINR   96 (444)
Q Consensus        82 gL~~d~dG-~LYIADa   96 (444)
                      ++++++|| .||+++.
T Consensus        93 ~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          93 SFAISPDGKEVYATVN  108 (346)
T ss_dssp             CEEECTTSSEEEEEEE
T ss_pred             EEEEecCCCEEEEEec
Confidence            99999886 5888875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.017  Score=49.74  Aligned_cols=146  Identities=11%  Similarity=0.128  Sum_probs=85.4

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECCC--CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR--RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t--g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      .|..+++++++..+|+++..++.....+...  ..+....-..                ..+...          .....
T Consensus       178 ~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------------~~~~~~----------~~~~~  231 (333)
T d1ri6a_         178 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD----------------MMPENF----------SDTRW  231 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE----------------CSCTTC----------CSCCC
T ss_pred             CccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee----------------eeecCC----------Ccccc
Confidence            5789999999999999999888877666432  2111110000                000001          11566


Q ss_pred             cceeEEcCCC-eEEEEeCCCCEEEEEECCCC-cEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           80 PWHLMKSEDD-NLLIINRSFETLWIMDLASG-EIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        80 P~gL~~d~dG-~LYIADagnh~IrkIDl~tG-~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      |.+++++.++ .+|++....+.++.+++... ...++.+-.+                              .+..+.++
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~p~~~  281 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP------------------------------TETQPRGF  281 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE------------------------------CSSSCCCE
T ss_pred             ceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC------------------------------CCCCeeEE
Confidence            8888888875 58999988887777665432 2222221000                              00011122


Q ss_pred             CcccccccccccCCeEEEEeCCCCeEEE--EeCCCCeEEEeeeccccccCCceeeee
Q 013362          158 PYAGLISSSIAFQNHILLCDIVGQRIMR--LNRESGVCSNFQFSNFAILGLPYWFAF  212 (444)
Q Consensus       158 p~a~~~Sgla~~~~~LyIADT~nhRIRk--vdl~tG~vST~~fsg~g~lg~P~~l~~  212 (444)
                      +       +..++..||++....+.|+.  +|.+||.++.++-...|.  .|.|..+
T Consensus       282 a-------~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~--~p~~v~~  329 (333)
T d1ri6a_         282 N-------VDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQ--GPMWVVV  329 (333)
T ss_dssp             E-------ECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSS--SCCEEEE
T ss_pred             E-------EeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCC--CCcEEEE
Confidence            2       12356789999988887776  588899887765333332  3777653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.81  E-value=0.0034  Score=60.02  Aligned_cols=120  Identities=13%  Similarity=0.027  Sum_probs=78.8

Q ss_pred             cceEEEecCCC-EEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362            3 PAASFYHKDDD-CLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW   81 (444)
Q Consensus         3 P~GIa~D~~g~-~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~   81 (444)
                      |....++.+.. .+||+-+..+.|+.+|+.++.+.-....|                                   ..|.
T Consensus        21 ~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-----------------------------------~~~~   65 (432)
T d1qksa2          21 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-----------------------------------YAVH   65 (432)
T ss_dssp             CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-----------------------------------SCEE
T ss_pred             CCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-----------------------------------CCee
Confidence            44444433333 56799999999999999988665433222                                   1277


Q ss_pred             eeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEE---eecCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362           82 HLMKSEDDN-LLIINRSFETLWIMDLASGEIKE---AVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL  157 (444)
Q Consensus        82 gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~T---iagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi  157 (444)
                      ++++++||. ||++.+ .+.|++||+.++.-..   +-.|...                                  .++
T Consensus        66 ~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~~~~----------------------------------~~~  110 (432)
T d1qksa2          66 ISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSEA----------------------------------RSI  110 (432)
T ss_dssp             EEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECCSEE----------------------------------EEE
T ss_pred             EEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecCCCC----------------------------------CCe
Confidence            899999875 888876 4699999998876332   2211110                                  011


Q ss_pred             CcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362          158 PYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN  195 (444)
Q Consensus       158 p~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST  195 (444)
                      .++.   ....++..||++....+.|+.+|.+++.+..
T Consensus       111 ~~s~---~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~  145 (432)
T d1qksa2         111 ETSK---MEGWEDKYAIAGAYWPPQYVIMDGETLEPKK  145 (432)
T ss_dssp             EECC---STTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEec---ccCCCCCEEEEEcCCCCeEEEEeCcccccee
Confidence            1100   0123567899999999999999999988754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.64  E-value=0.0085  Score=52.61  Aligned_cols=75  Identities=11%  Similarity=0.043  Sum_probs=52.5

Q ss_pred             CcceE-EEecCCCEEEEEeCCCC----eEEEEECCCCeEE-EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            2 RPAAS-FYHKDDDCLYIVDSENH----AIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         2 ~P~GI-a~D~~g~~LYVADTeNH----aIRkIDl~tg~Vt-TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      +|..+ |..|++..+||+|...+    .|..+|..+|.+. |+- .|.                                
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~--------------------------------   48 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGF--------------------------------   48 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECS--------------------------------
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCC--------------------------------
Confidence            46666 45789999999986543    5999999888643 321 110                                


Q ss_pred             CCCCcceeEEcCCCe-EEEEeCC---------CCEEEEEECCCCcEEE
Q 013362           76 SLIFPWHLMKSEDDN-LLIINRS---------FETLWIMDLASGEIKE  113 (444)
Q Consensus        76 ~Ln~P~gL~~d~dG~-LYIADag---------nh~IrkIDl~tG~I~T  113 (444)
                         .| ++++++||. ||+++..         .+.|++||+.+|++..
T Consensus        49 ---~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~   92 (355)
T d2bbkh_          49 ---LP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA   92 (355)
T ss_dssp             ---SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             ---CC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEE
Confidence               02 577887764 9998753         4689999999998653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.57  E-value=0.17  Score=44.52  Aligned_cols=122  Identities=5%  Similarity=-0.017  Sum_probs=76.1

Q ss_pred             ceEEEecCCCEEEEEeCC---------CCeEEEEECCCCeEE-EeccCCCcCccCCcchhhhhcccCcccccCccccCCC
Q 013362            4 AASFYHKDDDCLYIVDSE---------NHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLD   73 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTe---------NHaIRkIDl~tg~Vt-TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~   73 (444)
                      .+++++++|..||++...         .+.|+.+|+.++.+. ++......                  ....       
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~------------------~~~~-------  123 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------------------RFDV-------  123 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc------------------eeEe-------
Confidence            478999999999999753         467888888877553 22221111                  0011       


Q ss_pred             CCCCCCcceeEEcCCC-eEEEEeC-CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccccc
Q 013362           74 PQSLIFPWHLMKSEDD-NLLIINR-SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSS  151 (444)
Q Consensus        74 ~~~Ln~P~gL~~d~dG-~LYIADa-gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~  151 (444)
                         ...|.++++..+| .+|++.. ..+.++.++..++++...... +.                               
T Consensus       124 ---~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------------  168 (373)
T d2madh_         124 ---GPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PT-------------------------------  168 (373)
T ss_pred             ---ccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc-ce-------------------------------
Confidence               4567888887774 4777663 456777788777665433210 10                               


Q ss_pred             ccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362          152 CSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF  196 (444)
Q Consensus       152 ~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~  196 (444)
                          ++.       +...+..+|++......++.++..++.+...
T Consensus       169 ----~~~-------~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         169 ----CYH-------IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             ----eEE-------EecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence                000       1123556888888888888888888777654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.51  E-value=0.02  Score=51.88  Aligned_cols=84  Identities=4%  Similarity=-0.166  Sum_probs=59.3

Q ss_pred             eEEEecCCCEEEEEeCC---------CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362            5 ASFYHKDDDCLYIVDSE---------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ   75 (444)
Q Consensus         5 GIa~D~~g~~LYVADTe---------NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~   75 (444)
                      ++++.++|..||++...         ...|+.+|+.++++.-.......                .. .          .
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~----------------~~-~----------~  121 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA----------------PR-F----------S  121 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS----------------CS-C----------C
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc----------------ce-e----------c
Confidence            68888898889998742         34588888887755432221100                00 0          0


Q ss_pred             CCCCcceeEEcCCC-eEEEEeCCCCEEEEEECCCCcEEEee
Q 013362           76 SLIFPWHLMKSEDD-NLLIINRSFETLWIMDLASGEIKEAV  115 (444)
Q Consensus        76 ~Ln~P~gL~~d~dG-~LYIADagnh~IrkIDl~tG~I~Tia  115 (444)
                      ....|+++++++|| .|||++...++|+.+|+.++++....
T Consensus       122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~  162 (368)
T d1mdah_         122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT  162 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE
T ss_pred             ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEe
Confidence            14568999999987 59999999999999999999876544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.37  E-value=0.0046  Score=56.25  Aligned_cols=75  Identities=15%  Similarity=0.003  Sum_probs=55.4

Q ss_pred             cceEEEecCCCEEEEEeCCC--------CeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCC
Q 013362            3 PAASFYHKDDDCLYIVDSEN--------HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDP   74 (444)
Q Consensus         3 P~GIa~D~~g~~LYVADTeN--------HaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~   74 (444)
                      ++.++++++++.+||+..+.        ..|+.+|..++.+..-...                                 
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~---------------------------------  312 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---------------------------------  312 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---------------------------------
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC---------------------------------
Confidence            46789999999999986544        3578888877753311111                                 


Q ss_pred             CCCCCcceeEEcCCCe--EEEEeCCCCEEEEEECCCCcEE
Q 013362           75 QSLIFPWHLMKSEDDN--LLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        75 ~~Ln~P~gL~~d~dG~--LYIADagnh~IrkIDl~tG~I~  112 (444)
                        =..|+++++++||.  ||++..+.++|+.||..+|+..
T Consensus       313 --~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         313 --GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             --EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             --CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence              11367888888874  8999999999999999999854

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.22  E-value=0.028  Score=53.17  Aligned_cols=24  Identities=4%  Similarity=0.247  Sum_probs=20.3

Q ss_pred             ccCCeEEEEeCCCCeEEEEeCCCC
Q 013362          168 AFQNHILLCDIVGQRIMRLNRESG  191 (444)
Q Consensus       168 ~~~~~LyIADT~nhRIRkvdl~tG  191 (444)
                      .+++.||||++..++|++++++..
T Consensus       215 ~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         215 PDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCCCEEEEEeCCCCeEEEEEeCCC
Confidence            356789999999999999998743

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.81  E-value=0.013  Score=51.29  Aligned_cols=76  Identities=20%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             ceEEEecCCCEEEEEeCC---------CCeEEEEECCCCeEE-EeccCCCcCccCCcchhhhhcccCcccccCccccCCC
Q 013362            4 AASFYHKDDDCLYIVDSE---------NHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLD   73 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTe---------NHaIRkIDl~tg~Vt-TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~   73 (444)
                      ..+++++++..+|++-..         .+.|+.+|+.++.+. ++..                                 
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~---------------------------------  298 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---------------------------------  298 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---------------------------------
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC---------------------------------
Confidence            458899999888887432         246888888766432 2211                                 


Q ss_pred             CCCCCCcceeEEcCCCe--EEEEeCCCCEEEEEECCCCcE-EEee
Q 013362           74 PQSLIFPWHLMKSEDDN--LLIINRSFETLWIMDLASGEI-KEAV  115 (444)
Q Consensus        74 ~~~Ln~P~gL~~d~dG~--LYIADagnh~IrkIDl~tG~I-~Tia  115 (444)
                         =..|+++++++||.  ||++..+.++|+.||+.||++ .++.
T Consensus       299 ---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         299 ---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             ---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence               01367888988875  788999999999999999985 4554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.71  E-value=0.17  Score=43.39  Aligned_cols=38  Identities=8%  Similarity=0.144  Sum_probs=32.0

Q ss_pred             CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362           79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      ..+.++++++|..+++-...+.++.+++.++....+..
T Consensus        87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  124 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  124 (360)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eEEeeeecccccccceeccccccccccccccceeeeee
Confidence            35688899999888888899999999999998776653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=95.64  E-value=0.06  Score=47.56  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             CcceeEEcCCCe--EEEEeCCCCEEEEEECCCCcEEEe
Q 013362           79 FPWHLMKSEDDN--LLIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        79 ~P~gL~~d~dG~--LYIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      .|+++++++||.  ||++....++|+.||..||++..-
T Consensus       319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~  356 (373)
T d2madh_         319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            367899998876  789999999999999999986433

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.99  E-value=0.8  Score=38.98  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=27.0

Q ss_pred             ceeEEcCCCe-EE-EEeCCCCEEEEEECCCCcEEEeec
Q 013362           81 WHLMKSEDDN-LL-IINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        81 ~gL~~d~dG~-LY-IADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      .++++++||. |+ .++...+.|+.+|+.+|++..+.+
T Consensus        46 ~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3          46 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            4677888875 43 355666789999999999887764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.23  E-value=0.05  Score=53.94  Aligned_cols=78  Identities=13%  Similarity=0.127  Sum_probs=54.0

Q ss_pred             CcceEEE--ecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362            2 RPAASFY--HKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF   79 (444)
Q Consensus         2 ~P~GIa~--D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~   79 (444)
                      ||.....  .++|..|||+|..|++|.+||+.++.+.-+.-..                       .          -..
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP-----------------------~----------g~g  117 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP-----------------------N----------VQA  117 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT-----------------------T----------CCC
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC-----------------------C----------CCC
Confidence            5666654  3578899999999999999999998665433211                       0          234


Q ss_pred             cceeEEcCCC-eEEEEeCCCCEE------------------EEEECCCCcEE
Q 013362           80 PWHLMKSEDD-NLLIINRSFETL------------------WIMDLASGEIK  112 (444)
Q Consensus        80 P~gL~~d~dG-~LYIADagnh~I------------------rkIDl~tG~I~  112 (444)
                      |.+++++++| .+||+..+.+.+                  ..+|..+.++.
T Consensus       118 phgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2         118 IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             EEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             ccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            6777777654 478887666554                  55888776653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.01  E-value=0.028  Score=54.92  Aligned_cols=40  Identities=20%  Similarity=0.342  Sum_probs=37.7

Q ss_pred             CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362           77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK  116 (444)
Q Consensus        77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag  116 (444)
                      |..||+|++.++|.|||+.+...+|++++.++|..+++.+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~   65 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQ   65 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeeccc
Confidence            9999999999999999999999999999999999988874

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.84  E-value=0.048  Score=51.52  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=28.1

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEECC
Q 013362            2 RPAASFYHKDDDCLYIVDSENHAIRRADMG   31 (444)
Q Consensus         2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~   31 (444)
                      .|.||+++++++.||||++..++|+++++.
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            589999999999999999999999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.63  E-value=2.9  Score=36.37  Aligned_cols=33  Identities=24%  Similarity=0.147  Sum_probs=26.1

Q ss_pred             cceeEEcCC-CeEEEEeCCCCEEEEEECCCCcEE
Q 013362           80 PWHLMKSED-DNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        80 P~gL~~d~d-G~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ...+++.++ +.++++=...++|+.+|+.+++..
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             cEEeeeccccceeccccccccceeeeeecccccc
Confidence            356778765 678887778899999999988754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=90.35  E-value=0.21  Score=49.31  Aligned_cols=84  Identities=8%  Similarity=-0.026  Sum_probs=61.1

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      .+|+|++++++|..+|++...-+.|..+|+.+ .-+++.|....          .     ...       .+.+..-..|
T Consensus       258 ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k-~~~~~~~~~~~----------~-----~~~-------~~~~~~glgp  314 (441)
T d1qnia2         258 KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK-LDDLFEDKIEL----------R-----DTI-------VAEPELGLGP  314 (441)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGG-HHHHTTTSSCG----------G-----GGE-------EECCBCCSCE
T ss_pred             CCccCceECCCCCEEEEeCCcCCcEEEEEeeh-hhhHhhccCCc----------c-----eEE-------EeecccccCc
Confidence            36999999999999999999999999999753 22233333111          0     000       0111224468


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECC
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLA  107 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~  107 (444)
                      .+..++++|+.|.+.....+|.+|++.
T Consensus       315 lh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         315 LHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ccceecCCceEEEcccccceEEEeccc
Confidence            899999999999999999999999974

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.69  E-value=0.45  Score=46.04  Aligned_cols=41  Identities=17%  Similarity=0.365  Sum_probs=36.4

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCC
Q 013362            1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTS   42 (444)
Q Consensus         1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG   42 (444)
                      .+|.+|++.++| .|||++....+|++++..++.++++.+..
T Consensus        27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~   67 (450)
T d1crua_          27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVP   67 (450)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECT
T ss_pred             CCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCC
Confidence            379999999998 69999988899999999999999988763

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.43  E-value=5.2  Score=34.46  Aligned_cols=33  Identities=9%  Similarity=-0.117  Sum_probs=26.7

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ...+++.++|.++++=...+.|+.+|..+|+..
T Consensus       268 i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cceEEECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            357788888888888778899999999988754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.85  E-value=3  Score=34.64  Aligned_cols=35  Identities=11%  Similarity=-0.041  Sum_probs=27.5

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEe
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      ...++++++|.++++-...+.|+.||+.+++....
T Consensus       273 i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEE
Confidence            35677888888888877889999999998875433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.71  E-value=1.1  Score=39.90  Aligned_cols=75  Identities=15%  Similarity=0.178  Sum_probs=49.6

Q ss_pred             Cc-ceEEEecCCCEEEEEeCCCCeEEEEECCCCe---EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCC
Q 013362            2 RP-AASFYHKDDDCLYIVDSENHAIRRADMGRRV---LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL   77 (444)
Q Consensus         2 ~P-~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~---VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~L   77 (444)
                      .| ..++|+++|..|.++ +.++.||..|+.++.   +.++-|-  .               +                 
T Consensus         8 ~pIt~~~~s~dg~~la~~-~~~~~i~iw~~~~~~~~~~~~l~gH--~---------------~-----------------   52 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAIC-PNNHEVHIYEKSGNKWVQVHELKEH--N---------------G-----------------   52 (371)
T ss_dssp             SCCCEEEECTTSSEEEEE-CSSSEEEEEEEETTEEEEEEEEECC--S---------------S-----------------
T ss_pred             CCeEEEEECCCCCEEEEE-eCCCEEEEEECCCCCEEEEEEecCC--C---------------C-----------------
Confidence            34 689999999766555 778999999987764   3333321  1               0                 


Q ss_pred             CCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           78 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        78 n~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                       .-..|+++++++++++=.....|+.||+.++...
T Consensus        53 -~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_          53 -QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             -CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             -CEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence             0135677777776665555678888888777644

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.22  E-value=3.2  Score=40.76  Aligned_cols=152  Identities=13%  Similarity=0.125  Sum_probs=83.9

Q ss_pred             CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccccccccc
Q 013362           88 DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI  167 (444)
Q Consensus        88 dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla  167 (444)
                      +|.||+++. +++|..+|++||++.---.-.....                             ....+ +....-++++
T Consensus        77 ~g~vyv~t~-~~~v~AlDa~TG~~~W~~~~~~~~~-----------------------------~~~~~-~~~~~~~g~~  125 (573)
T d1kb0a2          77 DGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRS-----------------------------TGFKG-CCDVVNRGVA  125 (573)
T ss_dssp             TTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGG-----------------------------GGGGS-SSCSCCCCCE
T ss_pred             CCEEEEECC-CCeEEEEeCCCCCeEEEeCCCCCcc-----------------------------ccccc-ccccccccce
Confidence            479999975 4579999999998654321000000                             00000 0000113455


Q ss_pred             ccCCeEEEEeCCCCeEEEEeCCCCeEE-Eeeecc-----ccccCCceeeeeccceeeecccccCCcccceeeeeecCCCe
Q 013362          168 AFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSN-----FAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGR  241 (444)
Q Consensus       168 ~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg-----~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pGr  241 (444)
                      ..++.+|+... ..++..+|.+||..- ......     ....+.|..+   -+.++-.+..........|.-+|..+|+
T Consensus       126 ~~~~~v~~~t~-~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~---~~~vivg~~~~~~~~~G~v~a~D~~TG~  201 (573)
T d1kb0a2         126 LWKGKVYVGAW-DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGE  201 (573)
T ss_dssp             EETTEEEEECT-TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             EECCcEEEEec-ccceeeeccccccceecccCccCCcceEEeecceEEE---eccEEEeeccccccccceEEEEecCCcc
Confidence            66888999865 458999999999874 222111     1122223222   2334433333344455689999999999


Q ss_pred             eeEEEeeeCCCCcc---------cccccccceeeeeecccee
Q 013362          242 IDIKVNVDIPSDTE---------LVESLQEGCIWRQARGTAS  274 (444)
Q Consensus       242 i~i~v~v~~P~~~e---------l~~p~~e~ciwrq~rg~~~  274 (444)
                      ..=+.+..-|.+-+         -.++......|.+.+|.+.
T Consensus       202 ~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~  243 (573)
T d1kb0a2         202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGT  243 (573)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECC
T ss_pred             ceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCc
Confidence            88777765444332         2233445556666665544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.94  E-value=8.6  Score=33.30  Aligned_cols=75  Identities=9%  Similarity=0.077  Sum_probs=47.1

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL   83 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL   83 (444)
                      ..++++++++.++++-+....|+..|+.++.....-...                                  -.....+
T Consensus       150 ~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~----------------------------------~~~i~~v  195 (311)
T d1nr0a1         150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH----------------------------------TKFVHSV  195 (311)
T ss_dssp             EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC----------------------------------SSCEEEE
T ss_pred             ccccccccceeeecccccccccccccccccccccccccc----------------------------------ccccccc
Confidence            456666666555665556666777776655433221110                                  1112577


Q ss_pred             EEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           84 MKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        84 ~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      .+++++.++++-...+.|+.+|+.++...
T Consensus       196 ~~~p~~~~l~~~~~d~~v~~~d~~~~~~~  224 (311)
T d1nr0a1         196 RYNPDGSLFASTGGDGTIVLYNGVDGTKT  224 (311)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccCcccccccccccccccccccccccccc
Confidence            88888887777777889999999887644

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.59  E-value=4.6  Score=39.77  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=46.2

Q ss_pred             CCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCe
Q 013362           12 DDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN   90 (444)
Q Consensus        12 g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~   90 (444)
                      ++.|||+++..+.|-.+|.. +|.         .      +|.|.. +........  .     ..-....++++.+ +.
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~---------~------~W~~~~-~~~~~~~~~--~-----~~~~~~rg~a~~~-~~  117 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGK---------I------VWQHKP-KQDASTKAV--M-----CCDVVDRGLAYGA-GQ  117 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTS---------E------EEEECC-CCCGGGGGG--C-----TTCSCCCCCEEET-TE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCc---------e------EEEecC-CCCcccccc--c-----ccCcCCCcceeeC-Ce
Confidence            45899999877778888853 443         2      454331 111110000  0     0011235677776 78


Q ss_pred             EEEEeCCCCEEEEEECCCCcEEE
Q 013362           91 LLIINRSFETLWIMDLASGEIKE  113 (444)
Q Consensus        91 LYIADagnh~IrkIDl~tG~I~T  113 (444)
                      ||+.+. ..++..+|..||++..
T Consensus       118 i~~~~~-~g~l~alda~tG~~~w  139 (571)
T d2ad6a1         118 IVKKQA-NGHLLALDAKTGKINW  139 (571)
T ss_dssp             EEEECT-TSEEEEEETTTCCEEE
T ss_pred             EEEEeC-CCcEEeeehhhhhhhc
Confidence            998874 5689999999998753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.27  E-value=3.9  Score=34.08  Aligned_cols=32  Identities=9%  Similarity=-0.002  Sum_probs=23.4

Q ss_pred             cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      ...+++++++.++++-..+++|+.+|+.++..
T Consensus       182 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  213 (299)
T d1nr0a2         182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFE  213 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            35677777777777777778888888876643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.22  E-value=3  Score=41.14  Aligned_cols=128  Identities=10%  Similarity=0.101  Sum_probs=71.7

Q ss_pred             CCeEEEEeCCCCEEEEEEC-CCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccccc
Q 013362           88 DDNLLIINRSFETLWIMDL-ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSS  166 (444)
Q Consensus        88 dG~LYIADagnh~IrkIDl-~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgl  166 (444)
                      +|.|||+++..++|..+|. +||+..--... ..... .        +                    ....+...-.++
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~-~~~~~-~--------~--------------------~~~~~~~~~rg~  111 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKP-KQDAS-T--------K--------------------AVMCCDVVDRGL  111 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECC-CCCGG-G--------G--------------------GGCTTCSCCCCC
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecC-CCCcc-c--------c--------------------cccccCcCCCcc
Confidence            3899999988888999998 47975432210 00000 0        0                    000000111345


Q ss_pred             cccCCeEEEEeCCCCeEEEEeCCCCeEE-Eeeeccc----cccCCceeeeeccceeeecccccCCcccceeeeeecCCCe
Q 013362          167 IAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNF----AILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGR  241 (444)
Q Consensus       167 a~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg~----g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pGr  241 (444)
                      +..++.||+.+. ..++..+|.+||.+- .++..+.    .+-+.|.-+.   ..++-......-...-.|..+|+.+|+
T Consensus       112 a~~~~~i~~~~~-~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~---~~vivg~~~~~~~~~G~v~a~D~~TG~  187 (571)
T d2ad6a1         112 AYGAGQIVKKQA-NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK---DTVLMGCSGAELGVRGAVNAFDLKTGE  187 (571)
T ss_dssp             EEETTEEEEECT-TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET---TEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred             eeeCCeEEEEeC-CCcEEeeehhhhhhhccccccccccccceeecCeEeC---CeEEEeeccccccccCcEEEEECCCCc
Confidence            666888998865 468999999999863 2332221    1222232222   334433322223345679999999998


Q ss_pred             eeEEEeee
Q 013362          242 IDIKVNVD  249 (444)
Q Consensus       242 i~i~v~v~  249 (444)
                      +.=+.+..
T Consensus       188 ~~W~~~t~  195 (571)
T d2ad6a1         188 LKWRAFAT  195 (571)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEecc
Confidence            88666553

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.84  E-value=10  Score=32.81  Aligned_cols=32  Identities=19%  Similarity=0.193  Sum_probs=26.0

Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIK  112 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~  112 (444)
                      ..++++++|.++++=...+.|+.||..+|++.
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKTIKIWNVATLKVE  273 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            47888888887777667889999999999753

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.69  E-value=3.5  Score=36.69  Aligned_cols=89  Identities=11%  Similarity=0.039  Sum_probs=53.4

Q ss_pred             ceEEEecCCCEEEEEeCCC--CeEEEEECCCC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362            4 AASFYHKDDDCLYIVDSEN--HAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP   80 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeN--HaIRkIDl~tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P   80 (444)
                      ..|+|+|+|..|+.+=..+  ..||..|+.+| .+.++.......            .....   .    .-+.   ..=
T Consensus       235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~------------~~~~~---~----~gH~---~~V  292 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS------------QASLG---E----FAHS---SWV  292 (393)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------------------C---C----BSBS---SCE
T ss_pred             EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccc------------cceee---e----eccc---Cce
Confidence            3577888887676663333  25788888776 344554332110            00000   0    0000   112


Q ss_pred             ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEe
Q 013362           81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA  114 (444)
Q Consensus        81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Ti  114 (444)
                      +.|+++++|.+.++-...++||.||+.+|+....
T Consensus       293 ~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         293 MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT  326 (393)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeeccCCCCCeeEEECCCCEEEEEECCCCCEEEE
Confidence            5788998899999999999999999999975433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.73  E-value=9.1  Score=32.99  Aligned_cols=75  Identities=11%  Similarity=0.023  Sum_probs=48.1

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC-cc
Q 013362            4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF-PW   81 (444)
Q Consensus         4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~-P~   81 (444)
                      ..++++|++..++++=+.++.||..|+.++.. .++.|....                                ... -+
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~--------------------------------v~~~~~  256 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP--------------------------------VQGGIF  256 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC--------------------------------CCSCEE
T ss_pred             EEeeeccccceeccccccccceeeeeeccccccccccccccc--------------------------------ccccee
Confidence            46788887656777667778899998877753 444432100                                000 12


Q ss_pred             eeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362           82 HLMKSEDDNLLIINRSFETLWIMDLASGEI  111 (444)
Q Consensus        82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I  111 (444)
                      .+... +|.++++=...+.|+.||+.+|+.
T Consensus       257 s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         257 ALSWL-DSQKFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             EEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eeecc-CCCEEEEEeCCCeEEEEECCCCCE
Confidence            22333 466777777889999999998874