Citrus Sinensis ID: 013365

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
MAEASAASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEGDVKRIRV
cccccccccEEEEEccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEEccccccccccccccEEccEEEcccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccEEcccccccEEEEEEEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEcEEccccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEccccEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEcccccccccEEEEEEEEEEccccEEEEcccccccccccccccccEEEEEEcccccEEEccccEEEEEc
ccccccccccEEEHccccccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccEEEEEEcHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEEccccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEEEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEEccccccEEEEEEEccccccccEEEEEccccccccccccccccccccccccccEEEEccccEEEEEc
MAEASAaseaasttaapfrpvLLISAGASHSVALLSGNivcswgrgedgqlghgdaedrlsptqlsaldgheivsvtcgadhttayseSCMQVYswgwgdfgrlghgnssdlftplpiKALHSLRVKQiacgdshclAVTVEgevqswgrnqngqlglgttedslvpqklQAFEGVSIKMVAAGAEHSVavaedgelygwgwgrygnlglgdrndrlipekvatVDLQREKMVMVACGWrhtisvsssgrlysygwskygqlghgdfkdhlVPCQLEALRESFISQISggwrhtmavtsdgklygwgwnkfgqvgvgdnvdhcspvqvkfpldqiscgwrhtlavterqnvfswgrgtngqlghgessdrnspkiieplsldgskgqniasskydpssgktwvspseryavvpddtvqgqtsvtgrgngsevsvpegdvkrirv
maeasaaseaasttaapfRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLglgdrndrlipEKVATVDLQREKMVMVACGWrhtisvsssgrlYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTErqnvfswgrgtngqlghgessdrnspKIIEPLSLDGSKGQNiasskydpssgktwVSPSERYAvvpddtvqgqtsvtgrgngsevsvpegdvkrirv
MaeasaaseaasttaaPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEGDVKRIRV
*****************FRPVLLISAGASHSVALLSGNIVCSWGRG********************ALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRG***************************************************************************************
MAEASA*SEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEG**KRIRV
**************AAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQ*********NSPKIIEPLSLDGSKGQNIA*************SPSERYAVVPDDTVQGQ**************PEGDVKRIRV
*****AASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEGDVKRIRV
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MAEASAASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEGDVKRIRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query444 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV yes no 0.981 0.990 0.790 0.0
Q5GLZ8 1057 Probable E3 ubiquitin-pro yes no 0.907 0.381 0.334 1e-51
Q5PQN1 1057 Probable E3 ubiquitin-pro yes no 0.677 0.284 0.372 2e-50
Q6PAV2 1057 Probable E3 ubiquitin-pro yes no 0.677 0.284 0.368 4e-50
Q15034 1050 Probable E3 ubiquitin-pro no no 0.684 0.289 0.378 4e-48
Q15751 4861 Probable E3 ubiquitin-pro no no 0.700 0.063 0.347 2e-44
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.614 0.055 0.352 3e-40
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.801 0.073 0.317 1e-38
O95714 4834 E3 ubiquitin-protein liga no no 0.614 0.056 0.348 2e-38
Q8IVU3 1022 Probable E3 ubiquitin-pro no no 0.659 0.286 0.341 4e-37
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/448 (79%), Positives = 392/448 (87%), Gaps = 12/448 (2%)

Query: 1   MAEASAASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRL 60
           MAE  AA E      AP R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR 
Sbjct: 1   MAEDMAADE----VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP 56

Query: 61  SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA 120
           SPTQLSALDGH+IVSVTCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKA
Sbjct: 57  SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA 116

Query: 121 LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180
           LH +R+KQIACGDSHCLAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKM
Sbjct: 117 LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKM 176

Query: 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR 240
           VAAGAEH+ AV EDG+LYGWGWGRYGNLGLGDR DRL+PE+V +     EKM MVACGWR
Sbjct: 177 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWR 234

Query: 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSD 300
           HTISVS SG LY+YGWSKYGQLGHGD +DHL+P +LEAL  SFISQISGGWRHTMA+TSD
Sbjct: 235 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD 294

Query: 301 GKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGR 356
           GKLYGWGWNKFGQVGVG+N+D CSPVQV+FP D    Q+SCGWRHTLAVTER NVF+WGR
Sbjct: 295 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGR 354

Query: 357 GTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDT 416
           GTNGQLG GES DRN PKIIE LS+DG+ GQ+I SS  DPSSGK+WVSP+ERYAVVPD+T
Sbjct: 355 GTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAERYAVVPDET 414

Query: 417 VQGQTSVTGRGNGSEVSVPEGDVKRIRV 444
             G T  + +GNG ++SVP+ DVKR+R+
Sbjct: 415 --GLTDGSSKGNGGDISVPQTDVKRVRI 440
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
225438373445 PREDICTED: probable E3 ubiquitin-protein 0.970 0.968 0.835 0.0
449457319438 PREDICTED: probable E3 ubiquitin-protein 0.961 0.974 0.811 0.0
224093583444 predicted protein [Populus trichocarpa] 0.986 0.986 0.786 0.0
297797389440 UVB-resistance 8 [Arabidopsis lyrata sub 0.981 0.990 0.792 0.0
15237540440 protein UV-B resistance 8 [Arabidopsis t 0.981 0.990 0.790 0.0
5478530440 UVB-resistance protein UVR8 [Arabidopsis 0.981 0.990 0.790 0.0
312282233440 unnamed protein product [Thellungiella h 0.968 0.977 0.801 0.0
255563857437 uvb-resistance protein uvr8, putative [R 0.972 0.988 0.803 0.0
147782117423 hypothetical protein VITISV_010346 [Viti 0.921 0.966 0.796 0.0
356508943441 PREDICTED: probable E3 ubiquitin-protein 0.975 0.981 0.763 0.0
>gi|225438373|ref|XP_002274569.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis vinifera] gi|296082603|emb|CBI21608.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/437 (83%), Positives = 396/437 (90%), Gaps = 6/437 (1%)

Query: 12  STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGH 71
           S  +AP R VLLISAGASHSVALLSGN+VCSWGRGEDGQLGHGDAEDRLSPT LSALDGH
Sbjct: 9   SEVSAPVRRVLLISAGASHSVALLSGNVVCSWGRGEDGQLGHGDAEDRLSPTYLSALDGH 68

Query: 72  EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC 131
           E+VSVTCGADHTTAYSES  QVYSWGWGDFGRLGHGNSSDLFTP PIKALH LR+KQIAC
Sbjct: 69  EVVSVTCGADHTTAYSESFTQVYSWGWGDFGRLGHGNSSDLFTPQPIKALHGLRIKQIAC 128

Query: 132 GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAV 191
           GDSHCLAVT++GEVQSWGRNQNGQLGLGTTEDSLVPQK+QAF+GVS+KMVAAGAEH+ AV
Sbjct: 129 GDSHCLAVTMDGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVSVKMVAAGAEHTAAV 188

Query: 192 AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251
            EDGELYGWGWGRYGNLGLGDRNDRL+PEKV+TV  +  KMV VACGWRHTISVSSSG L
Sbjct: 189 TEDGELYGWGWGRYGNLGLGDRNDRLVPEKVSTV--EGVKMVKVACGWRHTISVSSSGGL 246

Query: 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311
           Y+YGWSKYGQLGHGDF+DHL P +LEAL+E+ IS+ISGGWRHTMA+TSDGKLYGWGWNKF
Sbjct: 247 YTYGWSKYGQLGHGDFEDHLTPHKLEALQENLISEISGGWRHTMALTSDGKLYGWGWNKF 306

Query: 312 GQVGVGDNVDHCSPVQVKFPLDQ----ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES 367
           GQVGVGDNVDHCSPVQVKFP +Q    ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES
Sbjct: 307 GQVGVGDNVDHCSPVQVKFPHEQKVVHISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES 366

Query: 368 SDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRG 427
            DRN PK+IE LS DGS GQ I +SK DPS+G+ WVSPSERYAVVPD+T   QT V+ +G
Sbjct: 367 IDRNIPKMIEVLSADGSGGQQIETSKVDPSTGRIWVSPSERYAVVPDETGSTQTGVSVKG 426

Query: 428 NGSEVSVPEGDVKRIRV 444
           NG++ SVPE DVKRIR+
Sbjct: 427 NGNDASVPESDVKRIRL 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449457319|ref|XP_004146396.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224093583|ref|XP_002309939.1| predicted protein [Populus trichocarpa] gi|222852842|gb|EEE90389.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297797389|ref|XP_002866579.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata] gi|297312414|gb|EFH42838.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237540|ref|NP_201191.1| protein UV-B resistance 8 [Arabidopsis thaliana] gi|10177674|dbj|BAB11034.1| UVB-resistance protein UVR8 [Arabidopsis thaliana] gi|21928123|gb|AAM78089.1| AT5g63860/MGI19_6 [Arabidopsis thaliana] gi|23308399|gb|AAN18169.1| At5g63860/MGI19_6 [Arabidopsis thaliana] gi|332010422|gb|AED97805.1| protein UV-B resistance 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5478530|gb|AAD43920.1|AF130441_1 UVB-resistance protein UVR8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282233|dbj|BAJ33982.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|255563857|ref|XP_002522929.1| uvb-resistance protein uvr8, putative [Ricinus communis] gi|223537856|gb|EEF39472.1| uvb-resistance protein uvr8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147782117|emb|CAN67581.1| hypothetical protein VITISV_010346 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508943|ref|XP_003523212.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.954 0.963 0.803 2.4e-195
UNIPROTKB|E2RFW5 1049 HERC4 "Uncharacterized protein 0.677 0.286 0.372 3.9e-53
UNIPROTKB|E2RFV1 1057 HERC4 "Uncharacterized protein 0.677 0.284 0.372 4e-53
UNIPROTKB|E1BAV2 1057 HERC4 "Uncharacterized protein 0.677 0.284 0.368 5.2e-53
UNIPROTKB|Q5GLZ8 1057 HERC4 "Probable E3 ubiquitin-p 0.900 0.378 0.337 6.3e-53
RGD|1310971 1057 Herc4 "HECT and RLD domain con 0.907 0.381 0.330 5.9e-52
MGI|MGI:1914595 1057 Herc4 "hect domain and RLD 4" 0.907 0.381 0.325 2e-51
ZFIN|ZDB-GENE-090313-139 1046 herc3 "hect domain and RLD 3" 0.675 0.286 0.379 5.3e-51
UNIPROTKB|F1NBC5 1050 HERC3 "Uncharacterized protein 0.684 0.289 0.398 6.9e-51
UNIPROTKB|E2RMB0 1050 HERC3 "Uncharacterized protein 0.684 0.289 0.385 1.9e-50
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
 Identities = 347/432 (80%), Positives = 385/432 (89%)

Query:    17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
             P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct:    13 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 72

Query:    77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
             TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct:    73 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 132

Query:   137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
             LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct:   133 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 192

Query:   197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
             LYGWGWGRYGNLGLGDR DRL+PE+V +     EKM MVACGWRHTISVS SG LY+YGW
Sbjct:   193 LYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGALYTYGW 250

Query:   257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316
             SKYGQLGHGD +DHL+P +LEAL  SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGV
Sbjct:   251 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 310

Query:   317 GDNVDHCSPVQVKFPLDQ----ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNS 372
             G+N+D CSPVQV+FP DQ    +SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN 
Sbjct:   311 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 370

Query:   373 PKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEV 432
             PKIIE LS+DG+ GQ+I SS  DPSSGK+WVSP+ERYAVVPD+T  G T  + +GNG ++
Sbjct:   371 PKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAERYAVVPDET--GLTDGSSKGNGGDI 428

Query:   433 SVPEGDVKRIRV 444
             SVP+ DVKR+R+
Sbjct:   429 SVPQTDVKRVRI 440
GO:0005737 "cytoplasm" evidence=ISM
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS
GO:0009411 "response to UV" evidence=IMP
GO:0003682 "chromatin binding" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0010224 "response to UV-B" evidence=IEP;IGI
GO:0000785 "chromatin" evidence=IDA
GO:0009649 "entrainment of circadian clock" evidence=IMP
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0042803 "protein homodimerization activity" evidence=IDA
UNIPROTKB|E2RFW5 HERC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFV1 HERC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BAV2 HERC4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5GLZ8 HERC4 "Probable E3 ubiquitin-protein ligase HERC4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310971 Herc4 "HECT and RLD domain containing E3 ubiquitin protein ligase 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914595 Herc4 "hect domain and RLD 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-139 herc3 "hect domain and RLD 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBC5 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMB0 HERC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN03UVR8_ARATHNo assigned EC number0.79010.98190.9909yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-48
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-42
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-40
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-28
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 8e-28
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-17
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-15
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 9e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-12
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 8e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  171 bits (435), Expect = 3e-48
 Identities = 105/370 (28%), Positives = 157/370 (42%), Gaps = 38/370 (10%)

Query: 40  VCSWGRGEDGQLGHG-DAEDRLSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSW 96
           V SWG     +LG G D      P        D   I+ + CG +H+         +YSW
Sbjct: 70  VYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGN-LYSW 128

Query: 97  GWGDFGRLG---------HGNSSDLFT-----------PLPIKALHSLRVKQIACGDSHC 136
           G  D G LG           N    F            P    A   LRV ++ACG    
Sbjct: 129 GDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEIS 188

Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDS--LVPQKLQAFEGVS-IKMVAAGAEHSVAVAE 193
           + +T +G V SWG  + G+LG G+ ++S     Q          I  +AAGA+H +A+  
Sbjct: 189 VILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTN 248

Query: 194 DGELYGWGWGRYGNLGLGDRNDRLIPEKVA-TVDLQREKMVMVACGWRHTISVSSSGRLY 252
           +G++YGWG  + G LG        +   V     ++  K V  ACG  H++++   G +Y
Sbjct: 249 EGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYV--ACGKDHSLALDEDGEIY 306

Query: 253 SYGWSKYGQLGHG----DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 308
           ++G + +GQLG G           P   + L    I  IS G  H++ +  DG LY +G 
Sbjct: 307 AWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR 366

Query: 309 NKFGQVGVG-DNVDHCSPVQVKFPLD---QISCGWRHTLAVTERQNVFSWGRGTNGQLGH 364
              GQ+G+  +     S            Q++CG  H +A T+  +V+SWG G +G LG+
Sbjct: 367 GDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGN 426

Query: 365 GESSDRNSPK 374
           G         
Sbjct: 427 GPKEADVLVP 436

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 444
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.91
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.88
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.23
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.21
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.12
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.1
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.09
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.0
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.91
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 93.45
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 91.97
KOG0315311 consensus G-protein beta subunit-like protein (con 91.66
KOG3669 705 consensus Uncharacterized conserved protein, conta 91.39
KOG3669 705 consensus Uncharacterized conserved protein, conta 87.25
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 85.82
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 85.46
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 83.82
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 83.15
PHA03098534 kelch-like protein; Provisional 81.68
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 81.24
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-52  Score=396.29  Aligned_cols=357  Identities=31%  Similarity=0.553  Sum_probs=292.6

Q ss_pred             CCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCC-cCCeeeccC--CCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCc
Q 013365           27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGR  103 (444)
Q Consensus        27 G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~-~~P~~v~~~--~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gq  103 (444)
                      -..|...+..-..||+||+|...|||.+..+.. ..|++.+..  +...|++++||..|+++|++| |+||+||.|..|+
T Consensus        57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~G~  135 (476)
T COG5184          57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDGA  135 (476)
T ss_pred             cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCcccc
Confidence            355666888899999999999999999988765 889988877  667899999999999999999 9999999999999


Q ss_pred             cCCCCC----------------CCceeeeeecc----cCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCC
Q 013365          104 LGHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED  163 (444)
Q Consensus       104 lG~~~~----------------~~~~~p~~v~~----~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~  163 (444)
                      ||+...                ....+|..+..    ....+|++++||.+++++|+++|+||+||....+.++.+....
T Consensus       136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~  215 (476)
T COG5184         136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN  215 (476)
T ss_pred             cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence            998761                11345655554    2345899999999999999999999999998888888874443


Q ss_pred             ccc----ceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC
Q 013365          164 SLV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW  239 (444)
Q Consensus       164 ~~~----p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~  239 (444)
                      +..    +.++... ...|+++++|.+|.++|+++|+||.||+|..||||.........+..+..+. .-..|..|+||.
T Consensus       216 s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vacG~  293 (476)
T COG5184         216 SQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACGK  293 (476)
T ss_pred             cccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcccCc
Confidence            322    3333322 4579999999999999999999999999999999988776665555543222 123478899999


Q ss_pred             ceEEEEeCCCCEEEEeCCCCCcccCCCCC----CceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccc
Q 013365          240 RHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVG  315 (444)
Q Consensus       240 ~hs~~lt~~G~vy~~G~n~~gqLG~~~~~----~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG  315 (444)
                      +|+++|+++|+||+||.|.+||||.++..    ....|.....+....|..|++|..|+++|..+|.||+||.+..+|||
T Consensus       294 ~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg  373 (476)
T COG5184         294 DHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG  373 (476)
T ss_pred             ceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccccc
Confidence            99999999999999999999999998321    23346666677777899999999999999999999999999999999


Q ss_pred             cCC--CCCccCceEec--cCCCcEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCC-CCCCCCeEeeccccCCCce
Q 013365          316 VGD--NVDHCSPVQVK--FPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES-SDRNSPKIIEPLSLDGSKG  386 (444)
Q Consensus       316 ~g~--~~~~~~p~~v~--~~~~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~-~~~~~P~~i~~l~~~~~~~  386 (444)
                      ..+  +.....|.++.  ....+++||..|.++.+++|+||+||.|++||||.|+. .+...|+.+.+...++...
T Consensus       374 ~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~  449 (476)
T COG5184         374 IQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNI  449 (476)
T ss_pred             CcccceeecCCccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCce
Confidence            988  56666666665  33459999999999999999999999999999999975 5677888887643344433

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 0.0
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 0.0
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 0.0
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-178
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-39
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 4e-38
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 2e-12
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 7e-38
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 1e-37
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 7e-24
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 2e-22
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 2e-18
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 1e-06
1jtd_B273 Crystal Structure Of Beta-Lactamase Inhibitor Prote 4e-08
3qhy_B282 Structural, Thermodynamic And Kinetic Analysis Of T 4e-08
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/395 (82%), Positives = 356/395 (90%), Gaps = 6/395 (1%)
Query: 17  PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
           P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 14  PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 73
Query: 77  TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
           TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 74  TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 133
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
           LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 134 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
           LYGWGWGRYGNLGLGDR DRL+PE+V +     EKM MVACGWRHTISVS SG LY+YGW
Sbjct: 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGALYTYGW 251
Query: 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316
           SKYGQLGHGD +DHL+P +LEAL  SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGV
Sbjct: 252 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 311
Query: 317 GDNVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNS 372
           G+N+D CSPVQV+FP D    Q+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN 
Sbjct: 312 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 371
Query: 373 PKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 407
           PKIIE LS+DG+ GQ+I SS  DPSSGK+WVSP+E
Sbjct: 372 PKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 Back     alignment and structure
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-170
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-147
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-124
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-95
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 8e-79
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-29
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-132
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-107
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-98
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-82
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-70
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-54
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-32
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-125
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-104
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-102
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-83
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-76
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-73
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-96
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-93
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-67
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-25
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-58
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-57
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  482 bits (1242), Expect = e-170
 Identities = 329/404 (81%), Positives = 359/404 (88%), Gaps = 6/404 (1%)

Query: 8   SEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA 67
             AA    AP R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSA
Sbjct: 5   DMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 64

Query: 68  LDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVK 127
           LDGH+IVSVTCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+K
Sbjct: 65  LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 124

Query: 128 QIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187
           QIACGDSHCLAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 184

Query: 188 SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSS 247
           + AV EDG+LYGWGWGRYGNLGLGDR DRL+PE+V +     EKM MVACGWRHTISVS 
Sbjct: 185 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSY 242

Query: 248 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWG 307
           SG LY+YGWSKYGQLGHGD +DHL+P +LEAL  SFISQISGGWRHTMA+TSDGKLYGWG
Sbjct: 243 SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWG 302

Query: 308 WNKFGQVGVGDNVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLG 363
           WNKFGQVGVG+N+D CSPVQV+FP D    Q+SCGWRHTLAVTER NVF+WGRGTNGQLG
Sbjct: 303 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362

Query: 364 HGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 407
            GES DRN PKIIE LS+DG+ GQ+I SS  DPSSGK+WVSP+E
Sbjct: 363 IGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.36
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.6
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.09
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.83
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.78
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.7
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 95.54
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 95.31
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 95.0
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 94.0
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 93.5
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.38
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 93.35
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 92.94
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 92.86
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 89.61
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 88.27
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 87.94
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 87.46
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 86.46
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 85.29
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 85.29
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 84.25
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 84.07
3jrp_A379 Fusion protein of protein transport protein SEC13 83.71
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 82.51
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 81.88
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 81.71
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 81.05
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1.1e-81  Score=628.75  Aligned_cols=394  Identities=83%  Similarity=1.407  Sum_probs=362.5

Q ss_pred             ccCCCCCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCC
Q 013365           12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM   91 (444)
Q Consensus        12 ~~~~~~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g   91 (444)
                      ++..+++.+|++|+||..|+++|+++|+||+||+|.+||||.+..++...|+++..+.+.+|++|+||.+|+++|+++.+
T Consensus         9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg   88 (406)
T 4d9s_A            9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM   88 (406)
T ss_dssp             ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred             ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence            45666788999999999999999999999999999999999999999999999999988899999999999999999834


Q ss_pred             EEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeee
Q 013365           92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ  171 (444)
Q Consensus        92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~  171 (444)
                      +||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.
T Consensus        89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~  168 (406)
T 4d9s_A           89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ  168 (406)
T ss_dssp             EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred             EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCE
Q 013365          172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL  251 (444)
Q Consensus       172 ~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~v  251 (444)
                      .+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.  ..+|++|+||.+|+++|+++|+|
T Consensus       169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~v  246 (406)
T 4d9s_A          169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGAL  246 (406)
T ss_dssp             GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCCE
T ss_pred             ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCCE
Confidence            9999999999999999999999999999999999999999988888898886554  67899999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccC
Q 013365          252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP  331 (444)
Q Consensus       252 y~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~  331 (444)
                      |+||.|.+||||.++......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|+++..+
T Consensus       247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~  326 (406)
T 4d9s_A          247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP  326 (406)
T ss_dssp             EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred             EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888899988754


Q ss_pred             C----CcEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeccccCCCceeEeecccccCCCCccccCCCc
Q 013365          332 L----DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE  407 (444)
Q Consensus       332 ~----~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (444)
                      .    .+|+||.+|++||+++|+||+||+|++||||+|+..++..|+.|+.|..++....+++++......++.|++++|
T Consensus       327 ~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~~  406 (406)
T 4d9s_A          327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE  406 (406)
T ss_dssp             GGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC---------
T ss_pred             CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcCC
Confidence            3    389999999999999999999999999999999999999999999999999999999999899988999998865
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 444
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-46
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-40
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-23
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-16
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-12
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-08
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-08
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (411), Expect = 2e-46
 Identities = 109/386 (28%), Positives = 163/386 (42%), Gaps = 24/386 (6%)

Query: 27  GASHSVALLSGNIVCSWGRGEDGQLGHGD-AEDRLSPTQLSALDGHEIVSVTCGADHTTA 85
             SH        +V + G+G+ GQLG G+   +R  P  +S  +   +V    G  HT  
Sbjct: 4   KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVC 61

Query: 86  YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEV 145
            S+S  QVYS+G  D G LG   S +    +P K     +V Q++ GDSH  A+T +G V
Sbjct: 62  LSKS-GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRV 120

Query: 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFE-GVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204
             WG  ++    +G  E           +  V +  VA+G +H V +  DG+LY  G G 
Sbjct: 121 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE 180

Query: 205 YGNLGLGDRNDRLIPEKVATVDLQRE--------------KMVMVACGWRHTISVSSSGR 250
            G LG           +     L                 +     CG   T ++S  G 
Sbjct: 181 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240

Query: 251 LYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 308
           +Y +G S Y QLG                          SGG  HT+ + S+GK Y  G 
Sbjct: 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300

Query: 309 NKFGQVGVGDNVDHCS-PVQVKFPLD--QISCGWRHTLAVTERQNVFSWGRGTNGQLGHG 365
            ++G++G+G+  +  S P  +        ++CG     AVT+   VF+WG GTN QLG G
Sbjct: 301 AEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTG 360

Query: 366 ESSDRNSPKIIEPLSLDGSKGQNIAS 391
           +  D  SP  +    L+     +++S
Sbjct: 361 QDEDAWSPVEMMGKQLENRVVLSVSS 386
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.33
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.98
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 95.46
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.49
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 91.24
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 89.99
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 87.01
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 84.59
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 84.4
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 84.0
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 81.81
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-60  Score=472.00  Aligned_cols=362  Identities=31%  Similarity=0.489  Sum_probs=304.6

Q ss_pred             CCceEEEEcCCeEEEEeCCCCCCCCCCCCC-CCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCC
Q 013365           28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAE-DRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGH  106 (444)
Q Consensus        28 ~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~-~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~  106 (444)
                      -.|+++++++|+||+||.|.+||||++... .+..|.+|+.+.  +|++|+||..|++||+++ |+||+||.|.+||||+
T Consensus         5 ~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~-G~vy~wG~n~~GQLG~   81 (401)
T d1a12a_           5 VSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKS-GQVYSFGCNDEGALGR   81 (401)
T ss_dssp             CCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCS
T ss_pred             eeEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCC-CEEEEEeCCCCCCCCc
Confidence            469999999999999999999999998664 588999998776  599999999999999999 9999999999999999


Q ss_pred             CCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCC-cccceeeecccCCcEEEEEeCC
Q 013365          107 GNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-SLVPQKLQAFEGVSIKMVAAGA  185 (444)
Q Consensus       107 ~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~ia~G~  185 (444)
                      +...+...|.+.......+|++|+||..|+++++++|+||+||.+...+.+...... ...+..+......+|++|++|.
T Consensus        82 g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~  161 (401)
T d1a12a_          82 DTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN  161 (401)
T ss_dssp             CCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECS
T ss_pred             ccccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecc
Confidence            988888788888777788999999999999999999999999988766655443332 2233344445566899999999


Q ss_pred             CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCc-----------cceeeeeeee---cCCCeEEEEEecCceEEEEeCCCCE
Q 013365          186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDR-----------LIPEKVATVD---LQREKMVMVACGWRHTISVSSSGRL  251 (444)
Q Consensus       186 ~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~-----------~~p~~v~~~~---~~~~~i~~Ia~G~~hs~~lt~~G~v  251 (444)
                      .|+++++++|++|+||.|.+||||.......           ..|..+....   ....+|.+|+||.+|+++|+++|+|
T Consensus       162 ~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v  241 (401)
T d1a12a_         162 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHV  241 (401)
T ss_dssp             SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCE
T ss_pred             cceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeE
Confidence            9999999999999999999999997654211           1233322111   1235799999999999999999999


Q ss_pred             EEEeCCCCCcccCCCCCCceeeeeeccccC--CcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCC-ccCceEe
Q 013365          252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVD-HCSPVQV  328 (444)
Q Consensus       252 y~~G~n~~gqLG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~-~~~p~~v  328 (444)
                      |.||.|.++++|.........+..+..+..  ..++.|++|..|+++++++|+||+||.|.+||||.++... ...|.++
T Consensus       242 ~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i  321 (401)
T d1a12a_         242 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI  321 (401)
T ss_dssp             EEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEEC
T ss_pred             eeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEc
Confidence            999999999999998888777777766544  4599999999999999999999999999999999987544 4667777


Q ss_pred             ccCC--CcEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeccccCCCceeEeecc
Q 013365          329 KFPL--DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASS  392 (444)
Q Consensus       329 ~~~~--~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~  392 (444)
                      +...  .+|+||.+|++||+++|+||+||.|.+||||+|++.++..|++|..+...+....+++++
T Consensus       322 ~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G  387 (401)
T d1a12a_         322 SRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSG  387 (401)
T ss_dssp             CSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEEC
T ss_pred             CCCCCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEc
Confidence            6543  499999999999999999999999999999999999999999987666566566655544
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure