Citrus Sinensis ID: 013393
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 444 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZV7 | 612 | Probable methyltransferas | yes | no | 0.984 | 0.714 | 0.789 | 0.0 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.979 | 0.711 | 0.643 | 1e-174 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.975 | 0.712 | 0.640 | 1e-172 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.984 | 0.701 | 0.647 | 1e-170 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.936 | 0.609 | 0.456 | 1e-112 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.936 | 0.599 | 0.462 | 1e-110 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.927 | 0.629 | 0.449 | 1e-107 | |
| Q84TJ0 | 591 | Probable methyltransferas | no | no | 0.939 | 0.705 | 0.461 | 1e-107 | |
| Q9LZA4 | 600 | Probable methyltransferas | no | no | 0.936 | 0.693 | 0.453 | 1e-107 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.945 | 0.657 | 0.447 | 1e-105 |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/437 (78%), Positives = 389/437 (89%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGA
Sbjct: 168 MVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 227
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 228 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 287
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ
Sbjct: 288 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQ 347
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
+VIW KPISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVP
Sbjct: 348 SVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP 407
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLTAPPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLG
Sbjct: 408 WPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLG 467
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F
Sbjct: 468 GFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 527
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
+E + RGCSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D
Sbjct: 528 TETQARGCSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGD 587
Query: 421 ALSSSEERVLIAKKKLW 437
LS+ +E VLIA+KKLW
Sbjct: 588 PLSTKDEIVLIARKKLW 604
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 281/437 (64%), Positives = 344/437 (78%), Gaps = 2/437 (0%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVV GEKINFPGGGTHFH GADKYI ++A ML FP++ LNNGG +R LDVGCGVASFG
Sbjct: 167 MVVKGEKINFPGGGTHFHYGADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGG 226
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLL+ +I+ MSLAPNDVH+NQIQFALERGIP+ LGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 227 YLLASEIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 286
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDR+LRPGGYF YSSPEAYA D E+ RIW M L+ MCW I +K++Q
Sbjct: 287 WLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQ 346
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIW KP++N CYL R PG++PPLC+SD DPD + V M+ACI+ YS H KG+GL P
Sbjct: 347 TVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAP 406
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WPARLT+PPPRL + G +T+ F +D W+ RV YW + Q +T RN+MDM +++G
Sbjct: 407 WPARLTSPPPRLADFGYSTDIFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMG 466
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
FAAALK+KDVWVMNV P LK+IYDRGL+G VH WCE+FSTYPRTYDLLHAW +
Sbjct: 467 SFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDII 526
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
S+I++RGCS EDLL+EMDR+LRP GF++IRDK S+++ ++K++ AL W+ E + +
Sbjct: 527 SDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEA--VETKTASE 584
Query: 421 ALSSSEERVLIAKKKLW 437
+ S+ +LI +KKLW
Sbjct: 585 SDQDSDNVILIVQKKLW 601
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 605 bits (1559), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/439 (64%), Positives = 347/439 (79%), Gaps = 6/439 (1%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVV G+KINFPGGGTHFH GADKYI ++A ML +P++ LNNGG +R V DVGCGVASFG
Sbjct: 164 MVVKGDKINFPGGGTHFHYGADKYIASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGG 223
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLS DI+ MSLAPNDVH+NQIQFALERGIP++LGVLGTKRLPYPSRSFEL+HCSRCRID
Sbjct: 224 YLLSSDILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRID 283
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDR+LRPGGYF YSSPEAYA D E+ RIW M L++ MCWKI +K++Q
Sbjct: 284 WLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQ 343
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIW KP++N CYL+R PG++PPLC SD+DPD W V M+ACI+ YS H KG+GL P
Sbjct: 344 TVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAP 403
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WPARLT+PPPRL + G +T F +D +W+ RV YW + + +T RN+MDM +++G
Sbjct: 404 WPARLTSPPPRLADFGYSTGMFEKDTELWRQRVDTYWDLLSPRIESDTVRNIMDMKASMG 463
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
FAAALK+KDVWVMNV P LK+IYDRGL+G VH WCE+FSTYPRTYDLLHAW +
Sbjct: 464 SFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDII 523
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
S+I+++GCS DLL+EMDR+LRP GF+IIRDK ++++++K++ AL W+ EV + D
Sbjct: 524 SDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWE----EVGTKTD 579
Query: 421 ALSSSEER--VLIAKKKLW 437
+ S + V I +KKLW
Sbjct: 580 SDSDQDSDNVVFIVQKKLW 598
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 600 bits (1546), Expect = e-170, Method: Compositional matrix adjust.
Identities = 286/442 (64%), Positives = 342/442 (77%), Gaps = 5/442 (1%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MV GEKI+FPGGGTHFH GADKYI ++A ML F +D LN+ G +R VLDVGCGVASFGA
Sbjct: 172 MVEKGEKISFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGA 231
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLL+ DI+ MSLAPNDVH+NQIQFALERGIP+ LGVLGTKRLPYPSRSFE AHCSRCRID
Sbjct: 232 YLLASDIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRID 291
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDG+LLLELDR+LRPGGYF YSSPEAYA D EN +IW M L++ MCW+I K++Q
Sbjct: 292 WLQRDGLLLLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQ 351
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TV+W KP+SN CYL+R PG++PPLC SD DPD V M+ACI+PYS H KG+GL P
Sbjct: 352 TVVWQKPLSNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAP 411
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WPARLT+ PPRL + G +T+ F +D +W+ +V YW M + + NT RN+MDM +++G
Sbjct: 412 WPARLTSSPPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMG 471
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
FAAALKDKDVWVMNV LK+IYDRGLIGT H+WCE+FSTYPRTYDLLHAW +F
Sbjct: 472 SFAAALKDKDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIF 531
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSE---VEP 417
S+I+ +GCS EDLLIEMDR+LRP GFVIIRDK S++ I+K++ AL W+ SE
Sbjct: 532 SDIKSKGCSAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSS 591
Query: 418 RIDALSSSEER--VLIAKKKLW 437
+D S E V I +KKLW
Sbjct: 592 ELDQDSEDGENNVVFIVQKKLW 613
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/447 (45%), Positives = 282/447 (63%), Gaps = 31/447 (6%)
Query: 6 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH 65
+K FPGGGT F GAD+Y+ +++M+ ++ G + R VLD+GCGVASFGAYL+S
Sbjct: 240 DKFKFPGGGTQFIHGADQYLDQISQMIP----DISFGNHTRVVLDIGCGVASFGAYLMSR 295
Query: 66 DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125
+++ MS+AP DVHENQIQFALERG+P+ + T+RL YPS++F+L HCSRCRI+W + D
Sbjct: 296 NVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDD 355
Query: 126 GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 185
GILLLE++R+LR GGYFV+++ Y H+ W M +L +CW +V K+ IW
Sbjct: 356 GILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQ 415
Query: 186 KPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARL 245
KP++N+CYL R G PPLC+S+DDPD W V +KACI+ + G L PWPARL
Sbjct: 416 KPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGY---GANLAPWPARL 472
Query: 246 TAPPPRLEEVGVTT-----EEFHEDIGIWQVRVVDY-----WKQMKTVAQKNTFRNVMDM 295
PP RL+ + + + E F + W+ + +Y WKQ+ RNV+DM
Sbjct: 473 LTPPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWKQIG-------LRNVLDM 525
Query: 296 NSNLGGFAAALKD--KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDL 353
+ GGFAAAL + D WV+NV PV L +IYDRGL+G +HDWCE F TYPRTYDL
Sbjct: 526 RAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDL 585
Query: 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLS 413
LHA +FS IE + C+ +++EMDR+LRP G V IRD ++ + +++ A++W L
Sbjct: 586 LHAAGLFS-IERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLR 644
Query: 414 EVEPRIDALSSSEERVLIAKKKLWDEE 440
E S RVL+ +K+ E
Sbjct: 645 ETAEG----PHSSYRVLLCEKRFESSE 667
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/437 (46%), Positives = 269/437 (61%), Gaps = 21/437 (4%)
Query: 7 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHD 66
K FPGGGT F GAD+Y+ +++M+ + G +IR +DVGCGVASFGAYLLS D
Sbjct: 269 KFKFPGGGTQFIHGADQYLDQMSKMVS----DITFGKHIRVAMDVGCGVASFGAYLLSRD 324
Query: 67 IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 126
++ MS+AP DVHENQIQFALERG+P+ T+RL YPS++F+L HCSRCRI+W + DG
Sbjct: 325 VMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDG 384
Query: 127 ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 186
ILLLE++R+LR GGYF +++ Y H+P W M +L S+CWK+V K+ IW K
Sbjct: 385 ILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIWQK 444
Query: 187 PISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLT 246
P +N CYL R G++PPLC DDPD W +K CIS K + G + WPARL
Sbjct: 445 PFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIPEKGY---GGNVPLWPARLH 501
Query: 247 APPPRLEEVGVTT-----EEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGG 301
PP RL+ + + E F + W + Y + +K +K RNV+DM + GG
Sbjct: 502 TPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVRALKW--KKMKLRNVLDMRAGFGG 559
Query: 302 FAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKV 359
FAAAL D D WV++V PV L +IYDRGL+G +HDWCE F TYPRTYD LHA +
Sbjct: 560 FAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGL 619
Query: 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRI 419
FS IE + C +L+EMDR+LRP G IRD +++ I++ A+ W L +
Sbjct: 620 FS-IERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSLRDTSEGP 678
Query: 420 DALSSSEERVLIAKKKL 436
A R+L +K+L
Sbjct: 679 HA----SYRILTCEKRL 691
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/443 (44%), Positives = 276/443 (62%), Gaps = 31/443 (6%)
Query: 6 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH 65
+K FPGGGT F GAD+Y+ +++M+ + G R LD+GCGVASFGA+L+
Sbjct: 232 DKFVFPGGGTQFIHGADQYLDQISQMIP----DITFGSRTRVALDIGCGVASFGAFLMQR 287
Query: 66 DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125
+ +S+AP DVHENQIQFALERG+P+ + V T+RL YPS+SFE+ HCSRCRI+W + D
Sbjct: 288 NTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDD 347
Query: 126 GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 185
GILLLE++R+LR GGYFV+++ Y H+ + W M DL +CW+++ K+ +W
Sbjct: 348 GILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWR 407
Query: 186 KPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARL 245
KP++NSCY+ R G++PPLC DDDPD W V MK CI+ + G + WPARL
Sbjct: 408 KPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY---GANVSTWPARL 464
Query: 246 TAPPPRLEEVGVTT-----EEFHEDIGIWQVRVVDY-----WKQMKTVAQKNTFRNVMDM 295
PP RL+ + + E + W V Y WK+ K RNV+DM
Sbjct: 465 HDPPERLQSIQMDAYISRKEIMKAESRFWLEVVESYVRVFRWKEFK-------LRNVLDM 517
Query: 296 NSNLGGFAAALKD--KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDL 353
+ GGFAAAL D D WVMN+ PV L +IYDRGL G +HDWCE F TYPRTYDL
Sbjct: 518 RAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDL 577
Query: 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLS 413
+HA +FS +E++ C+ ++++EMDRMLRP G V IRD S+++ +++ A+ GW +
Sbjct: 578 IHAAFLFS-VEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAI---GWTA 633
Query: 414 EVEPRIDALSSSEERVLIAKKKL 436
V + +S R+LI K++
Sbjct: 634 GVHDTGEGPHAS-VRILICDKRI 655
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q84TJ0|PMT6_ARATH Probable methyltransferase PMT6 OS=Arabidopsis thaliana GN=At3g10200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/431 (46%), Positives = 268/431 (62%), Gaps = 14/431 (3%)
Query: 10 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIA 69
FPGGGTHF GA +YI L M+ + L + G ++ VLDVGCGVASF AYLL I
Sbjct: 169 FPGGGTHFKHGAAEYIQRLGNMMTNETGDLRSAGVVQ-VLDVGCGVASFAAYLLPLGIQT 227
Query: 70 MSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILL 129
+S AP D HENQIQFALERGI + + + TK+LPYP+ SFE+ HCSRCR+DW DGILL
Sbjct: 228 ISFAPKDGHENQIQFALERGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILL 287
Query: 130 LELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 189
E+ RLLRP G+FVYSSP AY D E IW+ + +L +MCWK++S+K QT IW K
Sbjct: 288 KEVHRLLRPNGFFVYSSPPAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEK 347
Query: 190 NSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPP 249
C ++ LC +D +W V +K C+ + E+ + L RL+A P
Sbjct: 348 EVCLKQKAELKLISLCDVEDVLKPSWKVPLKDCVQ--ISGQTEERPSSLA---ERLSAYP 402
Query: 250 PRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK 309
L ++G++ +E+ D W+ +V YW+ M + RNVMDMN+ +GGFAAA+
Sbjct: 403 ATLRKIGISEDEYTSDTVFWREQVNHYWRLMNV--NETEVRNVMDMNAFIGGFAAAMNSY 460
Query: 310 DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER--- 366
VWVMN+ P M+ L I++RGL G HDWCE+FSTYPRTYDL+H+ VFS +
Sbjct: 461 PVWVMNIVPATMNDTLSGIFERGLNGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGD 520
Query: 367 GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSE 426
GC ED+++EMDR++RP+GFVIIRD+ II+ IR W+ E+E + ++
Sbjct: 521 GCLLEDIMLEMDRIVRPQGFVIIRDEEYIISRIRGLAPKFLWEVETHELENKDKKIT--- 577
Query: 427 ERVLIAKKKLW 437
E VL +K+ W
Sbjct: 578 ESVLFCRKRFW 588
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 265/430 (61%), Gaps = 14/430 (3%)
Query: 10 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIA 69
FPGGGTHF GA +YI L M + L + G + VLDVGCGVASF AYLL I
Sbjct: 180 FPGGGTHFKHGAPEYIQRLGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKT 238
Query: 70 MSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILL 129
MS AP D HENQIQFALERGI + + + TK++PYP+ SF++ HCSRCR+DW + DG+L+
Sbjct: 239 MSFAPKDGHENQIQFALERGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLM 298
Query: 130 LELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 189
E++RLLRP GYFVYS+P AY D + IW+ + +L +MCWK++S+K QT IW K
Sbjct: 299 KEVNRLLRPNGYFVYSAPPAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDD 358
Query: 190 NSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPP 249
+C K +C +D +W V ++ C+ ++ +K + L RL++ P
Sbjct: 359 EACLRKNAELELITICGVEDVSKASWKVPLRDCVD--ISENRQQKPSSLT---DRLSSYP 413
Query: 250 PRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK 309
L E G++ +EF D W+ +V YW+ M K RNVMD N+ +GGFAAA+
Sbjct: 414 TSLREKGISEDEFTLDTNFWREQVNQYWELMN--VNKTEVRNVMDTNAFIGGFAAAMNSY 471
Query: 310 DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS--EIEERG 367
+WVMNV P M+ L IY RGL G HDWCE FSTYPRTYDLLHA +F+ +I G
Sbjct: 472 PLWVMNVVPATMNDTLSGIYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEG 531
Query: 368 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 427
C ED+++EMDR++RP+GF+IIRD+ SI++ +R W+ E++ + E
Sbjct: 532 CLLEDIMLEMDRIIRPQGFIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKY----KKTE 587
Query: 428 RVLIAKKKLW 437
VL +KK W
Sbjct: 588 TVLFCRKKFW 597
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/454 (44%), Positives = 281/454 (61%), Gaps = 34/454 (7%)
Query: 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL 62
V GE+ FPGGGT F GAD YI +AR++ G IR +D GCGVASFGAYL
Sbjct: 196 VEGERFRFPGGGTMFPRGADAYIDDIARLIPL------TDGAIRTAIDTGCGVASFGAYL 249
Query: 63 LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122
L DI+AMS AP D HE Q+QFALERG+P+ +G++G++RLPYP+R+F+LAHCSRC I W
Sbjct: 250 LKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWF 309
Query: 123 QRDGILLLELDRLLRPGGYFVYSSP--------EAYAHDPEN-RRIWNAMYDLLKSMCWK 173
Q DG+ L E+DR+LRPGGY++ S P + + E+ ++ +++ D +S+CWK
Sbjct: 310 QNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWK 369
Query: 174 IVSKKDQTVIWAKPISN-SC-YLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMH 231
V++K IW KPI++ C LKRV + PPLCS D PD W +++C++P
Sbjct: 370 KVTEKGDLSIWQKPINHVECNKLKRVHKT-PPLCSKSDLPDFAWYKDLESCVTPLPEANS 428
Query: 232 HEK--GTGLVPWPARLTAPPPRLEEVG-----VTTEEFHEDIGIWQVRVVDYWKQMKTVA 284
++ G L WP R A PPR+ +G + E+F ED +W+ R + Y+KQ+
Sbjct: 429 SDEFAGGALEDWPNRAFAVPPRI--IGGTIPDINAEKFREDNEVWKER-ISYYKQIMPEL 485
Query: 285 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSAR-LKIIYDRGLIGTVHDWCES 343
+ FRN+MDMN+ LGGFAAA+ WVMNV PV + L +I++RG IGT DWCE
Sbjct: 486 SRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEG 545
Query: 344 FSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFI 403
FSTYPRTYDL+HA +FS E R C +L+EMDR+LRPEG V+ RD ++ I+
Sbjct: 546 FSTYPRTYDLIHAGGLFSIYENR-CDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSIT 604
Query: 404 TALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 437
++W + + E + E++L+A K W
Sbjct: 605 NGMRWKSRILDHE----RGPFNPEKILLAVKSYW 634
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 444 | ||||||
| 224060159 | 528 | predicted protein [Populus trichocarpa] | 0.988 | 0.831 | 0.845 | 0.0 | |
| 255560962 | 603 | S-adenosylmethionine-dependent methyltra | 1.0 | 0.736 | 0.831 | 0.0 | |
| 449450056 | 610 | PREDICTED: probable methyltransferase PM | 1.0 | 0.727 | 0.817 | 0.0 | |
| 449483797 | 610 | PREDICTED: probable methyltransferase PM | 1.0 | 0.727 | 0.815 | 0.0 | |
| 359488775 | 612 | PREDICTED: probable methyltransferase PM | 0.995 | 0.722 | 0.831 | 0.0 | |
| 297807471 | 593 | hypothetical protein ARALYDRAFT_909408 [ | 0.984 | 0.736 | 0.787 | 0.0 | |
| 7573468 | 632 | putative protein [Arabidopsis thaliana] | 0.984 | 0.691 | 0.789 | 0.0 | |
| 22326809 | 612 | putative methyltransferase PMT9 [Arabido | 0.984 | 0.714 | 0.789 | 0.0 | |
| 42573369 | 612 | putative methyltransferase PMT9 [Arabido | 0.984 | 0.714 | 0.789 | 0.0 | |
| 157849758 | 608 | dehydration-responsive protein-related [ | 0.995 | 0.726 | 0.770 | 0.0 |
| >gi|224060159|ref|XP_002300064.1| predicted protein [Populus trichocarpa] gi|222847322|gb|EEE84869.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/439 (84%), Positives = 402/439 (91%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNGEKINFPGGGTHFHDGA+KYI++LARMLKFP+DKL+NGGNIRNVLDVGCGVASFGA
Sbjct: 87 MVVNGEKINFPGGGTHFHDGANKYIVSLARMLKFPNDKLHNGGNIRNVLDVGCGVASFGA 146
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSH IIAMS+APNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 147 YLLSHSIIAMSIAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 206
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYF YSSPEAYA DPENRRIWNAM+DLL+ MCW++ KKDQ
Sbjct: 207 WLQRDGILLLELDRLLRPGGYFAYSSPEAYALDPENRRIWNAMHDLLRRMCWRVAVKKDQ 266
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIW KP+ N CYLKR PG++PPLCS+ DDPD TWNV MKACI+PYSAKMH E+G+GLVP
Sbjct: 267 TVIWQKPLGNGCYLKRDPGTQPPLCSTGDDPDATWNVHMKACIAPYSAKMHKERGSGLVP 326
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLTA PRLE++GV+ E+FHED IWQ RV +YWKQMK+V +KN FRNVMDMNSNLG
Sbjct: 327 WPKRLTAASPRLEDIGVSPEQFHEDTNIWQFRVNEYWKQMKSVVRKNYFRNVMDMNSNLG 386
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GF AALKD DVWVMNVAPV MSARLKIIYDRGLIGTVHDWCE+FSTYPRTYDLLHAW VF
Sbjct: 387 GFGAALKDTDVWVMNVAPVNMSARLKIIYDRGLIGTVHDWCEAFSTYPRTYDLLHAWGVF 446
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
SEI+E GC EDLLIEMDR+LRP+GFVIIRDK IINYIRKF+TAL+WD WLSEVEPR D
Sbjct: 447 SEIQEHGCGVEDLLIEMDRILRPDGFVIIRDKPLIINYIRKFVTALRWDRWLSEVEPRSD 506
Query: 421 ALSSSEERVLIAKKKLWDE 439
ALS SEERVLIA+KKLW E
Sbjct: 507 ALSLSEERVLIARKKLWSE 525
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560962|ref|XP_002521494.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223539393|gb|EEF40984.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/444 (83%), Positives = 406/444 (91%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH GADKYI +LARMLKFP+DKL+NGG IRNVLDVGCGVASFGA
Sbjct: 160 MVVNGDKINFPGGGTHFHYGADKYIASLARMLKFPNDKLHNGGYIRNVLDVGCGVASFGA 219
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLL+HDII MSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 220 YLLAHDIITMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 279
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYF YSSPEAYAHDPENRRIW+AM+DLL MCW++V +KDQ
Sbjct: 280 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAHDPENRRIWSAMHDLLGRMCWRVVVRKDQ 339
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIWAKP SNSC+LKR PG++PPLCSSDDDPD TWNV MKACISPYS+KMH E+G+GLVP
Sbjct: 340 TVIWAKPTSNSCFLKREPGTQPPLCSSDDDPDATWNVHMKACISPYSSKMHKERGSGLVP 399
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RL A PPRLEE+GV+ EEF ED IWQ RV +YWKQMK+V +++ FRNVMDMNSNLG
Sbjct: 400 WPRRLIAAPPRLEEIGVSPEEFQEDTRIWQFRVSEYWKQMKSVVRRSYFRNVMDMNSNLG 459
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GF A LKD DVWVMNVAPV SARLKIIYDRGLIGTVHDWCE+FSTYPRT+DLLHAW+VF
Sbjct: 460 GFGAVLKDTDVWVMNVAPVNQSARLKIIYDRGLIGTVHDWCEAFSTYPRTFDLLHAWEVF 519
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
+E+EE GCS EDLLIEMDR+LRP+GFVIIRDK SIINYIRKF+TAL+WD W+SEVEPR D
Sbjct: 520 AEVEEHGCSSEDLLIEMDRILRPQGFVIIRDKPSIINYIRKFLTALRWDHWISEVEPRSD 579
Query: 421 ALSSSEERVLIAKKKLWDEEVAAI 444
AL+ +EERVLI +KKLW EV+AI
Sbjct: 580 ALALNEERVLIVRKKLWSGEVSAI 603
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450056|ref|XP_004142780.1| PREDICTED: probable methyltransferase PMT9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/444 (81%), Positives = 406/444 (91%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH GADKYI+ALARMLKFP DKLNNGGN+RNVLDVGCGVASFGA
Sbjct: 167 MVVNGDKINFPGGGTHFHYGADKYIIALARMLKFPGDKLNNGGNLRNVLDVGCGVASFGA 226
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDI+AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 227 YLLSHDIVAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 286
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYF YSSPEAYAHD ENRRI AM+D+LK MCWK+V+KKDQ
Sbjct: 287 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAHDQENRRIGMAMHDILKRMCWKVVAKKDQ 346
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIW KP+SNSCYLKR PG+ PPLC+ DDD D+TWNV M+ACIS YSAKMH +KG+GLVP
Sbjct: 347 TVIWGKPMSNSCYLKRDPGTLPPLCNLDDDSDLTWNVSMQACISRYSAKMHKQKGSGLVP 406
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLT+ PPRLEEVGV+ EEF ED +WQ+RV +YWK+M+ V Q+++ RNVMDMNSNLG
Sbjct: 407 WPQRLTSAPPRLEEVGVSAEEFKEDSTVWQLRVAEYWKEMRLVIQRDSIRNVMDMNSNLG 466
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL +KDVWVMNVAP+ SA+LKI+YDRGL+GTVHDWCE+FSTYPRTYDLLHAW VF
Sbjct: 467 GFAAALINKDVWVMNVAPINSSAKLKIVYDRGLLGTVHDWCEAFSTYPRTYDLLHAWAVF 526
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
S+I RGCS EDLLIEMDR+LRP+GFVIIRD S+INYIRK+ TAL+WDGWLSEVEPR+D
Sbjct: 527 SDINVRGCSMEDLLIEMDRILRPDGFVIIRDVPSVINYIRKYFTALRWDGWLSEVEPRVD 586
Query: 421 ALSSSEERVLIAKKKLWDEEVAAI 444
ALS EERVLIA+KKLW++E+A +
Sbjct: 587 ALSKVEERVLIARKKLWEKELATV 610
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483797|ref|XP_004156694.1| PREDICTED: probable methyltransferase PMT9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/444 (81%), Positives = 406/444 (91%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH GADKYI+ALARMLKFP DKLNNGGN+RNVLDVGCGVASFGA
Sbjct: 167 MVVNGDKINFPGGGTHFHYGADKYIIALARMLKFPGDKLNNGGNLRNVLDVGCGVASFGA 226
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDI+AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 227 YLLSHDIVAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 286
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYF YSSPEAYAHD ENRRI AM+D+LK MCWK+V+KKDQ
Sbjct: 287 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAHDQENRRIGMAMHDILKRMCWKVVAKKDQ 346
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIW KP+SNSCYLKR PG+ PPLC+ DDD D+TWNV M+ACIS YSAKMH +KG+GLVP
Sbjct: 347 TVIWGKPMSNSCYLKRDPGTLPPLCNLDDDSDLTWNVSMQACISRYSAKMHKQKGSGLVP 406
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLT+ PPRLEEVGV+ EEF ED +WQ+RV +YWK+M+ V Q+++ RNVMDMNSNLG
Sbjct: 407 WPQRLTSAPPRLEEVGVSAEEFKEDSTVWQLRVAEYWKEMRLVIQRDSIRNVMDMNSNLG 466
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL +KDVWVMNVAP+ SA+LKI+YDRGL+GTVHDWCE+FSTYPRTYDLLHAW VF
Sbjct: 467 GFAAALINKDVWVMNVAPINSSAKLKIVYDRGLLGTVHDWCEAFSTYPRTYDLLHAWAVF 526
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
S+I RGCS EDLLIEMDR+LRP+GFVIIRD S+INYIR++ TAL+WDGWLSEVEPR+D
Sbjct: 527 SDINVRGCSMEDLLIEMDRILRPDGFVIIRDVPSVINYIRQYFTALRWDGWLSEVEPRVD 586
Query: 421 ALSSSEERVLIAKKKLWDEEVAAI 444
ALS EERVLIA+KKLW++E+A +
Sbjct: 587 ALSKVEERVLIARKKLWEKELATV 610
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488775|ref|XP_002271722.2| PREDICTED: probable methyltransferase PMT9-like [Vitis vinifera] gi|296087585|emb|CBI34841.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/444 (83%), Positives = 403/444 (90%), Gaps = 2/444 (0%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH+GADKYI+ALARMLKFP DKLNNGGNIRNVLDVGCGVASFGA
Sbjct: 171 MVVNGDKINFPGGGTHFHNGADKYIIALARMLKFPDDKLNNGGNIRNVLDVGCGVASFGA 230
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLL H+I+AMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE+AHCSRCRID
Sbjct: 231 YLLPHNIMAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFEMAHCSRCRID 290
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYFVYSSPEAYA D NRRIWNA DLLK MCW++VSKKDQ
Sbjct: 291 WLQRDGILLLELDRLLRPGGYFVYSSPEAYARDAVNRRIWNATSDLLKRMCWRVVSKKDQ 350
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIWAKP SNSC+ KR PG+ PPLCSSDDDPD +WNV MKACI+PYS K+H +KG+GLVP
Sbjct: 351 TVIWAKPTSNSCFAKRDPGTLPPLCSSDDDPDASWNVFMKACITPYSGKVHRQKGSGLVP 410
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLT P RLEE G++ EEF ED IW RV +YWKQMK+V +K++FRNVMDMNSNLG
Sbjct: 411 WPQRLTTAPSRLEEFGISAEEFQEDTSIWYFRVFEYWKQMKSVVEKDSFRNVMDMNSNLG 470
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAALKDKDVWVMNVAPV SA+LKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW+VF
Sbjct: 471 GFAAALKDKDVWVMNVAPVNASAKLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWQVF 530
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
SEIEE GCS EDLLIEMDR+LRP+GFVIIRD+ SIINYI+KF+ AL+WDGW EVEPRID
Sbjct: 531 SEIEEHGCSSEDLLIEMDRILRPDGFVIIRDRPSIINYIQKFLIALRWDGWSIEVEPRID 590
Query: 421 ALSSSEERVLIAKKKLWDEEVAAI 444
LS+S+ERVLIA+KK W EEV+ I
Sbjct: 591 VLSASDERVLIARKK-W-EEVSTI 612
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807471|ref|XP_002871619.1| hypothetical protein ARALYDRAFT_909408 [Arabidopsis lyrata subsp. lyrata] gi|297317456|gb|EFH47878.1| hypothetical protein ARALYDRAFT_909408 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/437 (78%), Positives = 391/437 (89%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGA
Sbjct: 149 MVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 208
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 209 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 268
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ
Sbjct: 269 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQ 328
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
+VIW KPISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVP
Sbjct: 329 SVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP 388
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLTAPPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLG
Sbjct: 389 WPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLG 448
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F
Sbjct: 449 GFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 508
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
+E + RGCSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D
Sbjct: 509 TETQTRGCSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGD 568
Query: 421 ALSSSEERVLIAKKKLW 437
+LS+ ++RVLIA+K+LW
Sbjct: 569 SLSTKDDRVLIARKRLW 585
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7573468|emb|CAB87782.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/437 (78%), Positives = 389/437 (89%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGA
Sbjct: 188 MVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 247
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 248 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 307
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ
Sbjct: 308 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQ 367
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
+VIW KPISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVP
Sbjct: 368 SVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP 427
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLTAPPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLG
Sbjct: 428 WPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLG 487
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F
Sbjct: 488 GFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 547
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
+E + RGCSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D
Sbjct: 548 TETQARGCSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGD 607
Query: 421 ALSSSEERVLIAKKKLW 437
LS+ +E VLIA+KKLW
Sbjct: 608 PLSTKDEIVLIARKKLW 624
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22326809|ref|NP_196947.2| putative methyltransferase PMT9 [Arabidopsis thaliana] gi|75248535|sp|Q8VZV7.1|PMT9_ARATH RecName: Full=Probable methyltransferase PMT9 gi|17380666|gb|AAL36163.1| unknown protein [Arabidopsis thaliana] gi|21280807|gb|AAM45045.1| unknown protein [Arabidopsis thaliana] gi|332004649|gb|AED92032.1| putative methyltransferase PMT9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/437 (78%), Positives = 389/437 (89%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGA
Sbjct: 168 MVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 227
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 228 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 287
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ
Sbjct: 288 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQ 347
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
+VIW KPISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVP
Sbjct: 348 SVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP 407
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLTAPPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLG
Sbjct: 408 WPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLG 467
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F
Sbjct: 468 GFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 527
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
+E + RGCSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D
Sbjct: 528 TETQARGCSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGD 587
Query: 421 ALSSSEERVLIAKKKLW 437
LS+ +E VLIA+KKLW
Sbjct: 588 PLSTKDEIVLIARKKLW 604
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573369|ref|NP_974781.1| putative methyltransferase PMT9 [Arabidopsis thaliana] gi|332004650|gb|AED92033.1| putative methyltransferase PMT9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/437 (78%), Positives = 389/437 (89%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGA
Sbjct: 168 MVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 227
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 228 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 287
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ
Sbjct: 288 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQ 347
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
+VIW KPISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVP
Sbjct: 348 SVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP 407
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLTAPPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLG
Sbjct: 408 WPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLG 467
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F
Sbjct: 468 GFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 527
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
+E + RGCSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D
Sbjct: 528 TETQARGCSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGD 587
Query: 421 ALSSSEERVLIAKKKLW 437
LS+ +E VLIA+KKLW
Sbjct: 588 PLSTKDEIVLIARKKLW 604
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157849758|gb|ABV89662.1| dehydration-responsive protein-related [Brassica rapa] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/445 (77%), Positives = 390/445 (87%), Gaps = 3/445 (0%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGA
Sbjct: 163 MVVNGDKINFPGGGTHFHYGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 222
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 223 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 282
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR+I AM+DL + MCW++V+K+DQ
Sbjct: 283 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGTAMHDLFRRMCWRVVAKRDQ 342
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
+VIW KPISNSCYLKR PG +PPLC S DDPD TWNV MKACI+PYS +MH E+ +GLVP
Sbjct: 343 SVIWGKPISNSCYLKRGPGVQPPLCPSGDDPDATWNVSMKACITPYSVRMHKERWSGLVP 402
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLTAPPPRLEE+GVT E+F ED W+ RV++YWK +K + QKN+ RNVMDM+SNLG
Sbjct: 403 WPRRLTAPPPRLEEIGVTPEQFREDTETWRHRVMEYWKLLKPMVQKNSIRNVMDMSSNLG 462
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL DKDVWVMNV PV+ R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F
Sbjct: 463 GFAAALNDKDVWVMNVIPVQSQPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 522
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
+E + RGCS ED IEMDR+LRPEGFVIIRD S I+YI+K++T LKWD W++E P D
Sbjct: 523 TETQARGCSIEDFFIEMDRILRPEGFVIIRDTSENISYIKKYLTLLKWDKWMTETTPNGD 582
Query: 421 ALSSS-EERVLIAKKKLWDEEVAAI 444
+LS++ +ERVLIA+KKLW VAAI
Sbjct: 583 SLSAAKDERVLIARKKLW--SVAAI 605
|
Source: Brassica rapa Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 444 | ||||||
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.984 | 0.714 | 0.766 | 5.1e-193 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.975 | 0.712 | 0.621 | 4.9e-156 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.979 | 0.711 | 0.622 | 2.1e-155 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.984 | 0.701 | 0.626 | 2.4e-154 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.945 | 0.615 | 0.440 | 3.9e-99 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.932 | 0.596 | 0.462 | 8.2e-99 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.936 | 0.693 | 0.439 | 6.6e-97 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.939 | 0.636 | 0.436 | 2.2e-96 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.939 | 0.705 | 0.447 | 2.9e-96 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.945 | 0.657 | 0.442 | 3.7e-96 |
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1870 (663.3 bits), Expect = 5.1e-193, P = 5.1e-193
Identities = 335/437 (76%), Positives = 379/437 (86%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVVNG+KINFPGGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGA
Sbjct: 168 MVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 227
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLSHDIIAMSLAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 228 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 287
Query: 121 WLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGI PGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ
Sbjct: 288 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQ 347
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
+VIW KPISNSCYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVP
Sbjct: 348 SVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP 407
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WP RLTAPPPRLEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLG
Sbjct: 408 WPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLG 467
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
GFAAAL DKDVWVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F
Sbjct: 468 GFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 527
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
+E + RGCSFEDLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D
Sbjct: 528 TETQARGCSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGD 587
Query: 421 ALSSSEERVLIAKKKLW 437
LS+ +E VLIA+KKLW
Sbjct: 588 PLSTKDEIVLIARKKLW 604
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
Identities = 273/439 (62%), Positives = 338/439 (76%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVV G+KINFPGGGTHFH GADKYI ++A ML +P++ LNNGG +R V DVGCGVASFG
Sbjct: 164 MVVKGDKINFPGGGTHFHYGADKYIASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGG 223
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLS DI+ MSLAPNDVH+NQIQFALERGIP++LGVLGTKRLPYPSRSFEL+HCSRCRID
Sbjct: 224 YLLSSDILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRID 283
Query: 121 WLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGI PGGYF YSSPEAYA D E+ RIW M L++ MCWKI +K++Q
Sbjct: 284 WLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQ 343
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIW KP++N CYL+R PG++PPLC SD+DPD W V M+ACI+ YS H KG+GL P
Sbjct: 344 TVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAP 403
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WPARLT+PPPRL + G +T F +D +W+ RV YW + + +T RN+MDM +++G
Sbjct: 404 WPARLTSPPPRLADFGYSTGMFEKDTELWRQRVDTYWDLLSPRIESDTVRNIMDMKASMG 463
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
FAAALK+KDVWVMNV P LK+IYDRGL+G VH WCE+FSTYPRTYDLLHAW +
Sbjct: 464 SFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDII 523
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
S+I+++GCS DLL+EMDR+LRP GF+IIRDK ++++++K++ AL W+ EV + D
Sbjct: 524 SDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWE----EVGTKTD 579
Query: 421 ALSS--SEERVLIAKKKLW 437
+ S S+ V I +KKLW
Sbjct: 580 SDSDQDSDNVVFIVQKKLW 598
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
Identities = 272/437 (62%), Positives = 334/437 (76%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MVV GEKINFPGGGTHFH GADKYI ++A ML FP++ LNNGG +R LDVGCGVASFG
Sbjct: 167 MVVKGEKINFPGGGTHFHYGADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGG 226
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLL+ +I+ MSLAPNDVH+NQIQFALERGIP+ LGVLGTKRLPYPSRSFELAHCSRCRID
Sbjct: 227 YLLASEIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 286
Query: 121 WLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDGI PGGYF YSSPEAYA D E+ RIW M L+ MCW I +K++Q
Sbjct: 287 WLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQ 346
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TVIW KP++N CYL R PG++PPLC+SD DPD + V M+ACI+ YS H KG+GL P
Sbjct: 347 TVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAP 406
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WPARLT+PPPRL + G +T+ F +D W+ RV YW + Q +T RN+MDM +++G
Sbjct: 407 WPARLTSPPPRLADFGYSTDIFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMG 466
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
FAAALK+KDVWVMNV P LK+IYDRGL+G VH WCE+FSTYPRTYDLLHAW +
Sbjct: 467 SFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDII 526
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRID 420
S+I++RGCS EDLL+EMDR+LRP GF++IRDK S+++ ++K++ AL W+ E + +
Sbjct: 527 SDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEA--VETKTASE 584
Query: 421 ALSSSEERVLIAKKKLW 437
+ S+ +LI +KKLW
Sbjct: 585 SDQDSDNVILIVQKKLW 601
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1505 (534.8 bits), Expect = 2.4e-154, P = 2.4e-154
Identities = 277/442 (62%), Positives = 332/442 (75%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
MV GEKI+FPGGGTHFH GADKYI ++A ML F +D LN+ G +R VLDVGCGVASFGA
Sbjct: 172 MVEKGEKISFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGA 231
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLL+ DI+ MSLAPNDVH+NQIQFALERGIP+ LGVLGTKRLPYPSRSFE AHCSRCRID
Sbjct: 232 YLLASDIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRID 291
Query: 121 WLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180
WLQRDG+ PGGYF YSSPEAYA D EN +IW M L++ MCW+I K++Q
Sbjct: 292 WLQRDGLLLLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQ 351
Query: 181 TVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 240
TV+W KP+SN CYL+R PG++PPLC SD DPD V M+ACI+PYS H KG+GL P
Sbjct: 352 TVVWQKPLSNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAP 411
Query: 241 WPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
WPARLT+ PPRL + G +T+ F +D +W+ +V YW M + + NT RN+MDM +++G
Sbjct: 412 WPARLTSSPPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMG 471
Query: 301 GFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360
FAAALKDKDVWVMNV LK+IYDRGLIGT H+WCE+FSTYPRTYDLLHAW +F
Sbjct: 472 SFAAALKDKDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIF 531
Query: 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSE---VEP 417
S+I+ +GCS EDLLIEMDR+LRP GFVIIRDK S++ I+K++ AL W+ SE
Sbjct: 532 SDIKSKGCSAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSS 591
Query: 418 RIDALSSSEER--VLIAKKKLW 437
+D S E V I +KKLW
Sbjct: 592 ELDQDSEDGENNVVFIVQKKLW 613
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/443 (44%), Positives = 274/443 (61%)
Query: 6 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH 65
+K FPGGGT F GAD+Y+ +++M+ P ++ G + R VLD+GCGVASFGAYL+S
Sbjct: 240 DKFKFPGGGTQFIHGADQYLDQISQMI--PD--ISFGNHTRVVLDIGCGVASFGAYLMSR 295
Query: 66 DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125
+++ MS+AP DVHENQIQFALERG+P+ + T+RL YPS++F+L HCSRCRI+W + D
Sbjct: 296 NVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDD 355
Query: 126 GIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 185
GI GGYFV+++ Y H+ W M +L +CW +V K+ IW
Sbjct: 356 GILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQ 415
Query: 186 KPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARL 245
KP++N+CYL R G PPLC+S+DDPD W V +KACI+ + G L PWPARL
Sbjct: 416 KPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGY---GANLAPWPARL 472
Query: 246 TAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQM-----KTVAQKNT-FRNVMDMNSNL 299
PP RL+ + + + +++ + + + YWK++ + K RNV+DM +
Sbjct: 473 LTPPDRLQTIQIDSYIARKELFVAESK---YWKEIISNYVNALHWKQIGLRNVLDMRAGF 529
Query: 300 GGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW 357
GGFAAAL + D WV+NV PV L +IYDRGL+G +HDWCE F TYPRTYDLLHA
Sbjct: 530 GGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAA 589
Query: 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEP 417
+FS IE + C+ +++EMDR+LRP G V IRD ++ + +++ A++W L E
Sbjct: 590 GLFS-IERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLRETAE 648
Query: 418 RIDALSSSEERVLIAKKKLWDEE 440
S RVL+ +K+ E
Sbjct: 649 G----PHSSYRVLLCEKRFESSE 667
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 203/439 (46%), Positives = 264/439 (60%)
Query: 7 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHD 66
K FPGGGT F GAD+Y L +M K SD + G +IR +DVGCGVASFGAYLLS D
Sbjct: 269 KFKFPGGGTQFIHGADQY---LDQMSKMVSD-ITFGKHIRVAMDVGCGVASFGAYLLSRD 324
Query: 67 IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 126
++ MS+AP DVHENQIQFALERG+P+ T+RL YPS++F+L HCSRCRI+W + DG
Sbjct: 325 VMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDG 384
Query: 127 IXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 186
I GGYF +++ Y H+P W M +L S+CWK+V K+ IW K
Sbjct: 385 ILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIWQK 444
Query: 187 PISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTG-LVP-WPAR 244
P +N CYL R G++PPLC DDPD W +K CIS EKG G VP WPAR
Sbjct: 445 PFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIP-----EKGYGGNVPLWPAR 499
Query: 245 LTAPPPRLEEVGVTT-----EEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNL 299
L PP RL+ + + E F + W + Y + +K +K RNV+DM +
Sbjct: 500 LHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVRALKW--KKMKLRNVLDMRAGF 557
Query: 300 GGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW 357
GGFAAAL D D WV++V PV L +IYDRGL+G +HDWCE F TYPRTYD LHA
Sbjct: 558 GGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHAS 617
Query: 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEP 417
+FS IE + C +L+EMDR+LRP G IRD +++ I++ A+ GW + +
Sbjct: 618 GLFS-IERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAM---GWHTSLRD 673
Query: 418 RIDALSSSEERVLIAKKKL 436
+ +S R+L +K+L
Sbjct: 674 TSEGPHASY-RILTCEKRL 691
|
|
| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 189/430 (43%), Positives = 256/430 (59%)
Query: 10 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIA 69
FPGGGTHF GA +YI L M + L + G + VLDVGCGVASF AYLL I
Sbjct: 180 FPGGGTHFKHGAPEYIQRLGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKT 238
Query: 70 MSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXX 129
MS AP D HENQIQFALERGI + + + TK++PYP+ SF++ HCSRCR+DW + DG+
Sbjct: 239 MSFAPKDGHENQIQFALERGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLM 298
Query: 130 XXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 189
P GYFVYS+P AY D + IW+ + +L +MCWK++S+K QT IW K
Sbjct: 299 KEVNRLLRPNGYFVYSAPPAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDD 358
Query: 190 NSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPP 249
+C K +C +D +W V ++ C+ ++ +K + L RL++ P
Sbjct: 359 EACLRKNAELELITICGVEDVSKASWKVPLRDCVD--ISENRQQKPSSLTD---RLSSYP 413
Query: 250 PRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK 309
L E G++ +EF D W+ +V YW+ M K RNVMD N+ +GGFAAA+
Sbjct: 414 TSLREKGISEDEFTLDTNFWREQVNQYWELMNV--NKTEVRNVMDTNAFIGGFAAAMNSY 471
Query: 310 DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS--EIEERG 367
+WVMNV P M+ L IY RGL G HDWCE FSTYPRTYDLLHA +F+ +I G
Sbjct: 472 PLWVMNVVPATMNDTLSGIYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEG 531
Query: 368 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 427
C ED+++EMDR++RP+GF+IIRD+ SI++ +R W+ E++ + E
Sbjct: 532 CLLEDIMLEMDRIIRPQGFIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKY----KKTE 587
Query: 428 RVLIAKKKLW 437
VL +KK W
Sbjct: 588 TVLFCRKKFW 597
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 191/438 (43%), Positives = 269/438 (61%)
Query: 6 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH 65
+K FPGGGT F GAD+Y+ +++M+ P + G R LD+GCGVASFGA+L+
Sbjct: 232 DKFVFPGGGTQFIHGADQYLDQISQMI--PD--ITFGSRTRVALDIGCGVASFGAFLMQR 287
Query: 66 DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125
+ +S+AP DVHENQIQFALERG+P+ + V T+RL YPS+SFE+ HCSRCRI+W + D
Sbjct: 288 NTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDD 347
Query: 126 GIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 185
GI GGYFV+++ Y H+ + W M DL +CW+++ K+ +W
Sbjct: 348 GILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWR 407
Query: 186 KPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARL 245
KP++NSCY+ R G++PPLC DDDPD W V MK CI+ + G + WPARL
Sbjct: 408 KPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY---GANVSTWPARL 464
Query: 246 TAPPPRLEEVG----VTTEEFHE-DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG 300
PP RL+ + ++ +E + + W V Y + + K RNV+DM + G
Sbjct: 465 HDPPERLQSIQMDAYISRKEIMKAESRFWLEVVESYVRVFRWKEFK--LRNVLDMRAGFG 522
Query: 301 GFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWK 358
GFAAAL D D WVMN+ PV L +IYDRGL G +HDWCE F TYPRTYDL+HA
Sbjct: 523 GFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAF 582
Query: 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 418
+FS +E++ C+ ++++EMDRMLRP G V IRD S+++ +++ A+ GW + V
Sbjct: 583 LFS-VEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAI---GWTAGVHDT 638
Query: 419 IDALSSSEERVLIAKKKL 436
+ +S R+LI K++
Sbjct: 639 GEGPHASV-RILICDKRI 655
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 193/431 (44%), Positives = 261/431 (60%)
Query: 10 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIA 69
FPGGGTHF GA +YI L M+ + L + G ++ VLDVGCGVASF AYLL I
Sbjct: 169 FPGGGTHFKHGAAEYIQRLGNMMTNETGDLRSAGVVQ-VLDVGCGVASFAAYLLPLGIQT 227
Query: 70 MSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXX 129
+S AP D HENQIQFALERGI + + + TK+LPYP+ SFE+ HCSRCR+DW DGI
Sbjct: 228 ISFAPKDGHENQIQFALERGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILL 287
Query: 130 XXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 189
P G+FVYSSP AY D E IW+ + +L +MCWK++S+K QT IW K
Sbjct: 288 KEVHRLLRPNGFFVYSSPPAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEK 347
Query: 190 NSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPP 249
C ++ LC +D +W V +K C+ S + E+ + L RL+A P
Sbjct: 348 EVCLKQKAELKLISLCDVEDVLKPSWKVPLKDCVQ-ISGQTE-ERPSSLAE---RLSAYP 402
Query: 250 PRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK 309
L ++G++ +E+ D W+ +V YW+ M + RNVMDMN+ +GGFAAA+
Sbjct: 403 ATLRKIGISEDEYTSDTVFWREQVNHYWRLMNV--NETEVRNVMDMNAFIGGFAAAMNSY 460
Query: 310 DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER--- 366
VWVMN+ P M+ L I++RGL G HDWCE+FSTYPRTYDL+H+ VFS +
Sbjct: 461 PVWVMNIVPATMNDTLSGIFERGLNGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGD 520
Query: 367 GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSE 426
GC ED+++EMDR++RP+GFVIIRD+ II+ IR W+ E+E + ++ S
Sbjct: 521 GCLLEDIMLEMDRIVRPQGFVIIRDEEYIISRIRGLAPKFLWEVETHELENKDKKITES- 579
Query: 427 ERVLIAKKKLW 437
VL +K+ W
Sbjct: 580 --VLFCRKRFW 588
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 201/454 (44%), Positives = 276/454 (60%)
Query: 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL 62
V GE+ FPGGGT F GAD YI +AR++ P L +G IR +D GCGVASFGAYL
Sbjct: 196 VEGERFRFPGGGTMFPRGADAYIDDIARLI--P---LTDGA-IRTAIDTGCGVASFGAYL 249
Query: 63 LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122
L DI+AMS AP D HE Q+QFALERG+P+ +G++G++RLPYP+R+F+LAHCSRC I W
Sbjct: 250 LKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWF 309
Query: 123 QRDGIXXXXXXXXXXPGGYFVYSSP--------EAYAHDPEN-RRIWNAMYDLLKSMCWK 173
Q DG+ PGGY++ S P + + E+ ++ +++ D +S+CWK
Sbjct: 310 QNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWK 369
Query: 174 IVSKKDQTVIWAKPISN-SCY-LKRVPGSRPPLCSSDDDPDVTWNVLMKACISPY-SAKM 230
V++K IW KPI++ C LKRV + PPLCS D PD W +++C++P A
Sbjct: 370 KVTEKGDLSIWQKPINHVECNKLKRVHKT-PPLCSKSDLPDFAWYKDLESCVTPLPEANS 428
Query: 231 HHE-KGTGLVPWPARLTAPPPRLEEVG-----VTTEEFHEDIGIWQVRVVDYWKQMKTVA 284
E G L WP R A PPR+ +G + E+F ED +W+ R+ Y+KQ+
Sbjct: 429 SDEFAGGALEDWPNRAFAVPPRI--IGGTIPDINAEKFREDNEVWKERI-SYYKQIMPEL 485
Query: 285 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSAR-LKIIYDRGLIGTVHDWCES 343
+ FRN+MDMN+ LGGFAAA+ WVMNV PV + L +I++RG IGT DWCE
Sbjct: 486 SRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEG 545
Query: 344 FSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFI 403
FSTYPRTYDL+HA +FS E R C +L+EMDR+LRPEG V+ RD ++ I+
Sbjct: 546 FSTYPRTYDLIHAGGLFSIYENR-CDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSIT 604
Query: 404 TALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 437
++W + + E + E++L+A K W
Sbjct: 605 NGMRWKSRILDHERG----PFNPEKILLAVKSYW 634
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8VZV7 | PMT9_ARATH | 2, ., 1, ., 1, ., - | 0.7894 | 0.9842 | 0.7140 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 444 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-08 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-04 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 685 bits (1771), Expect = 0.0
Identities = 243/438 (55%), Positives = 297/438 (67%), Gaps = 13/438 (2%)
Query: 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA 60
+ V G+K FPGGGT F GAD YI LA+M+ GG +R LDVGCGVASFGA
Sbjct: 78 VKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDI----AWGGRVRTALDVGCGVASFGA 133
Query: 61 YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120
YLLS D++ MS AP DVHE Q+QFALERG+P+ LGVLGT+RLPYPSRSF++AHCSRC I
Sbjct: 134 YLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMAHCSRCLIP 193
Query: 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIWNAMYDLLKSMCWKIVSKKD 179
W DGILLLE+DR+LRPGGYFV S P YA D E+ + W AM L KS+CWK+V+KK
Sbjct: 194 WHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEALAKSLCWKLVAKKG 253
Query: 180 QTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLV 239
IW KP++NSCY KR PG +PPLC DDPD W V M+ACI+P H G L
Sbjct: 254 DIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWLE 313
Query: 240 PWPARLTAPPPRLEEV---GVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMN 296
WP RLTA PPRL GV+ E F D +W+ RV Y + +K + K RNVMDMN
Sbjct: 314 KWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLIDKGRVRNVMDMN 373
Query: 297 SNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHA 356
+ GGFAAAL D VWVMNV PV L +IYDRGLIG HDWCE FSTYPRTYDLLHA
Sbjct: 374 AGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIYHDWCEPFSTYPRTYDLLHA 433
Query: 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVE 416
+FS ++R C+ ED+L+EMDR+LRP G VIIRD +++ ++K A++W+ +++ E
Sbjct: 434 DHLFSLYKKR-CNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKAMRWEVRITDTE 492
Query: 417 PRIDALSSSEERVLIAKK 434
E++LIA+K
Sbjct: 493 DG----PHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-08
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 49 LDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPY 104
LDVGCG L + + D+ + A +R V+G + LP+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKF--VVGDAEDLPF 53
Query: 105 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 143
P SF++ S + L L E+ R+L+PGG V
Sbjct: 54 PDESFDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 49 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLG 98
LD+GCG + LL + + D+ ++ A ER + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGV-----DISPAALEAAAERLAALGLLDAVRVRLDV 55
Query: 99 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 142
+ SF++ S + L +L L RLL+PGG
Sbjct: 56 LDAIDLDPGSFDVVVASNV-LHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 48 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPS 106
VLD+GCG LL ND+ + A + + + G ++LP
Sbjct: 38 VLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTKLSENVQFICGDAEKLPLED 96
Query: 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146
SF+L + + W L EL R+L+PGG +S+
Sbjct: 97 SSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFST 135
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 444 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.83 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.73 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.71 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.68 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.64 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.61 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.61 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.6 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.57 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.57 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.54 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.54 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.52 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.51 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.5 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.5 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.49 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.48 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.45 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.44 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.43 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.43 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.43 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.42 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.42 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.42 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.41 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.4 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.37 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.36 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.35 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.35 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.34 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.34 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.33 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.33 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.32 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.32 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.31 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.28 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.28 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.27 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.27 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.26 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.26 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.26 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.25 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.22 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.22 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.21 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.21 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.21 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.2 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.19 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.19 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.18 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.18 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.17 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.17 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.17 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.16 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.15 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.15 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.15 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.14 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.13 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.12 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.12 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.11 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.1 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.09 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.09 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.09 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.09 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.09 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.08 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.08 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.06 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.04 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.04 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.03 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.03 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.02 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.02 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.01 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.98 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.98 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.97 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.97 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.95 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.93 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.92 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.91 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.89 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.88 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.87 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.87 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.87 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.86 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.85 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.84 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.83 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.8 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.8 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.8 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.79 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.76 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.75 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.73 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.72 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.72 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.72 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.71 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.71 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.67 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.66 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.66 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.66 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.64 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.64 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.62 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.6 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.59 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.58 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.57 | |
| PLN02366 | 308 | spermidine synthase | 98.57 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.57 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.56 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.55 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.53 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.53 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.52 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.5 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.45 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.42 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.42 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.42 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.39 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.39 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.37 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.36 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.35 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.35 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.34 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.33 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.32 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.31 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.31 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.3 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.26 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.26 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.25 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.25 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.24 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.24 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.23 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.23 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.17 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.15 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.15 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.12 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.11 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.1 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.09 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.03 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.01 | |
| PLN02476 | 278 | O-methyltransferase | 98.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.97 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.96 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.95 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.88 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.88 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.86 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.85 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.84 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.82 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.81 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.79 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.75 | |
| PLN02823 | 336 | spermine synthase | 97.75 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.71 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.71 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.67 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.65 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.64 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.6 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.6 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.54 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.49 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.43 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.42 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 97.41 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.36 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.35 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.32 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.3 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.27 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.27 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.27 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.25 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.22 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.14 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.12 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.12 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.12 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.07 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.06 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.05 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.03 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.03 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.01 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.96 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.96 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.94 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.93 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.93 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 96.89 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.86 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.8 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 96.77 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.77 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.77 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.75 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.7 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.65 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.58 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.51 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.24 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 96.23 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.16 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.12 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.06 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.0 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.96 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 95.96 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.92 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 95.74 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 95.73 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.72 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.71 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.6 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 95.59 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.57 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.56 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.53 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 95.49 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 95.43 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 95.2 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.19 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 95.15 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.11 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 95.06 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.02 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 94.93 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 94.86 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.81 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 94.77 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.63 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 94.59 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 94.38 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.37 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.32 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.31 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 94.27 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 94.24 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 94.18 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 94.18 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 94.18 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.16 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.04 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 93.86 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 93.85 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 93.78 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 93.66 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.66 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 93.54 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 93.51 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.46 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.36 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.32 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 93.01 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 92.85 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.69 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 92.35 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 92.19 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 92.12 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 91.91 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 91.69 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 91.54 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 91.36 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 91.31 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 91.22 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.11 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 90.88 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.41 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 90.39 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 90.39 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 90.31 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 90.29 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 90.11 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 89.76 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 89.73 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 89.72 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 89.72 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 89.57 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 89.43 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 89.1 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 88.99 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 88.72 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 88.58 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 88.51 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 88.48 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 88.31 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 88.19 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 87.87 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 87.77 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 87.7 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 87.64 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 87.63 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 87.51 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 87.4 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 87.29 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 87.11 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 86.54 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 85.97 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 85.8 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 85.61 | |
| PRK04266 | 226 | fibrillarin; Provisional | 85.5 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 85.49 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 85.09 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 84.95 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 84.6 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 84.5 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 84.23 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 84.19 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 83.93 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 83.74 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 83.2 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 83.03 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 82.86 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 82.64 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 81.94 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 81.86 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 81.8 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 80.93 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 80.9 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 80.4 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-133 Score=1017.19 Aligned_cols=425 Identities=54% Similarity=1.002 Sum_probs=405.2
Q ss_pred CcccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHH
Q 013393 1 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHEN 80 (444)
Q Consensus 1 ~~~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a 80 (444)
|+++|++|+||||||+|++|+.+|+++|+++++.. ..++.+|++||||||+|+|+.+|++++|+++++++.+.+++
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 57899999999999999999999999999999863 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-ChhhHHH
Q 013393 81 QIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-DPENRRI 159 (444)
Q Consensus 81 ~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-~~~~~~~ 159 (444)
++|+|.++|.++.+.+....+||||+++||+|||+.|.+.|.++.+.+|-|++|+|||||+|+++.|+.+.+ .++..+.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~ 233 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEE 233 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999998999999999999999999999999944 4566779
Q ss_pred HHHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCcccCCCCcchhhhhcccccccccccccccccCcccc
Q 013393 160 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLV 239 (444)
Q Consensus 160 ~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p~~~~~~~~~~~~ 239 (444)
|..++++++++||+.+.++++++|||||.+++||..++....|++|..+++++++||++|++|++++|+......++++.
T Consensus 234 ~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~ 313 (506)
T PF03141_consen 234 WNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLP 313 (506)
T ss_pred HHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCC
Confidence 99999999999999999999999999999999999999889999999889999999999999999999887777889999
Q ss_pred CCCCCCCCCCCCccc---cCCChhHHHhhHhhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEe
Q 013393 240 PWPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNV 316 (444)
Q Consensus 240 ~wP~rL~~~p~~~~~---~g~~~~~f~~~~~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~ 316 (444)
+||+||+..|+|+.. .|.+.+.|.+|++.|+++|+.|++.+...+++++|||||||||+||||||||+++|||||||
T Consensus 314 ~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNV 393 (506)
T PF03141_consen 314 KWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNV 393 (506)
T ss_pred CChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEe
Confidence 999999999999998 89999999999999999999999988778999999999999999999999999999999999
Q ss_pred ccccCCCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHHHH
Q 013393 317 APVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSII 396 (444)
Q Consensus 317 ~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~ 396 (444)
||++++|||++||||||||+||||||+|||||||||||||++||| .+++||+|+||||||||||||||++||||+.+++
T Consensus 394 VP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs-~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl 472 (506)
T PF03141_consen 394 VPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS-LYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVL 472 (506)
T ss_pred cccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh-hhcccccHHHHHHHhHhhcCCCceEEEeccHHHH
Confidence 999999999999999999999999999999999999999999999 6778899999999999999999999999999999
Q ss_pred HHHHHHHhhccceeEEeccccccCCCCCCCceEEEEEe
Q 013393 397 NYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 434 (444)
Q Consensus 397 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 434 (444)
++|++|+++|||+++++ ++|+++. ++||||||||
T Consensus 473 ~~v~~i~~~lrW~~~~~--d~e~g~~--~~EkiL~~~K 506 (506)
T PF03141_consen 473 EKVKKIAKSLRWEVRIH--DTEDGPD--GPEKILICQK 506 (506)
T ss_pred HHHHHHHHhCcceEEEE--ecCCCCC--CCceEEEEEC
Confidence 99999999999999754 6677765 4899999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-21 Score=194.45 Aligned_cols=150 Identities=22% Similarity=0.377 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhhhc----cCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccc---cccccccc
Q 013393 270 QVRVVDYWKQMKTVA----QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL---IGTVHDWC 341 (444)
Q Consensus 270 ~~~v~~y~~~l~~~l----~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~---~~~~~~~~ 341 (444)
+.-++.|...+.+.+ ..+.+|-++|+..|.|+|||.|.++.|-+|...|.+.+ ++..++.|||+ ||+.-+
T Consensus 95 ~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s-- 172 (506)
T PF03141_consen 95 PHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS-- 172 (506)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc--
Confidence 445556665555544 56899999999999999999999999999999999875 89999999996 444444
Q ss_pred cCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe----------ccHHHHHHHHHHHhhccceeE
Q 013393 342 ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 342 ~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r----------d~~~~~~~~~~~~~~~~w~~~ 411 (444)
..||.+.|+|||+|++++...+..+ -..+|+|+||||||||++|+. |..+..+++++++++|+|+.-
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~---~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~v 249 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPN---DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKV 249 (506)
T ss_pred ccccCCccchhhhhcccccccchhc---ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667999999999999966554 357999999999999999983 456889999999999999974
Q ss_pred EeccccccCCCCCCCceEEEEEecc
Q 013393 412 LSEVEPRIDALSSSEERVLIAKKKL 436 (444)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~k~~ 436 (444)
.. +..+-|.||+.
T Consensus 250 a~------------~~~~aIwqKp~ 262 (506)
T PF03141_consen 250 AE------------KGDTAIWQKPT 262 (506)
T ss_pred ee------------eCCEEEEeccC
Confidence 32 34599999974
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=156.40 Aligned_cols=101 Identities=21% Similarity=0.351 Sum_probs=80.2
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+.+|||||||||.++..+++. .|+++|+++.|+..+..+.......++.+.++|++.|||++++||+|.|++ .++
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-glr 130 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-GLR 130 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-hhh
Confidence 348999999999999999884 466666655554444322222112238899999999999999999999999 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+.+|.+++|+|++|||||||++++.+
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 88999999999999999999988754
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=158.93 Aligned_cols=100 Identities=24% Similarity=0.406 Sum_probs=73.8
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||||.++..++++ .|+++|+++.++..+..+.......++.+.++|++.+|+++++||+|.|++ .++
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-glr 127 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-GLR 127 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--GG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-hHH
Confidence 38999999999999998763 567777777666555544433334488999999999999999999999999 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
..+|..+.++|++|+|||||++++.+
T Consensus 128 n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 128 NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 78999999999999999999999754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-16 Score=163.08 Aligned_cols=305 Identities=16% Similarity=0.224 Sum_probs=164.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc--cCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK--RLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~--~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+.. ......++.+...|.. .+++++++||+|+|+.+ ++|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~-l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL-LMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhhh-HHh
Confidence 38999999999999999874 57777776655533211 1111345677778864 46788889999999984 777
Q ss_pred ccc--HHHHHHHHHhhcCCCeEEEEEcCCCCCC-------ChhhHHHHHHHHHHHHhcCeEEEeeecc--eeEeeccCch
Q 013393 122 LQR--DGILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKKDQ--TVIWAKPISN 190 (444)
Q Consensus 122 ~~d--~~~~L~ei~rvLkPGG~lvis~p~~~~~-------~~~~~~~~~~l~~l~~~~gf~~v~~~~~--~~~w~k~l~~ 190 (444)
..+ ...+++++.++|||||++++.+...... .+........+.+++.+.+|........ ...+.++...
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCIGA 195 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeechhh
Confidence 665 4689999999999999999976443221 1222223346667788888765543321 1122222211
Q ss_pred hhHhhcCCCCCCCcccCCCCcchhhhhcccccccccccccccccCccccCCCCCCCCCCCCccccCCC-hhHH-HhhHhh
Q 013393 191 SCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVT-TEEF-HEDIGI 268 (444)
Q Consensus 191 ~c~~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p~~~~~~~~~~~~~wP~rL~~~p~~~~~~g~~-~~~f-~~~~~~ 268 (444)
|.+.+. ....++.........-...+..++.. +.-.++ |+. .+.| ..+..+
T Consensus 196 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~y~~~-----~i~~~~~f~g~~~~v 248 (475)
T PLN02336 196 --YVKNKK-NQNQICWLWQKVSSTNDKGFQRFLDN-------------------VQYKSS-----GILRYERVFGEGFVS 248 (475)
T ss_pred --hhhccC-CcceEEEEEEeecCCcchhHHHHhhh-------------------hccccc-----cHHHHHHHhCCCCCC
Confidence 111111 11111111000000000111111111 000000 000 0000 000000
Q ss_pred H--HHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc--cc---ccc-ccc
Q 013393 269 W--QVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR--GL---IGT-VHD 339 (444)
Q Consensus 269 w--~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r--g~---~~~-~~~ 339 (444)
- ..........+. ++ .-..|+|+.+|.|+++..|.+..- -+|+=++-. ..|.+.-.+ |+ +-. ..|
T Consensus 249 ~~~v~~te~l~~~~~--~~--~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d 322 (475)
T PLN02336 249 TGGLETTKEFVDKLD--LK--PGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRKCSVEFEVAD 322 (475)
T ss_pred CchHHHHHHHHHhcC--CC--CCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcC
Confidence 0 002233333333 32 335799999999999888875431 145544432 334333222 21 112 234
Q ss_pred cccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 340 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 340 ~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.+ .+.-+.+||+|.+.+.+-++. +...++-|+-|.|+|||.++|.|
T Consensus 323 ~~~-~~~~~~~fD~I~s~~~l~h~~----d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 323 CTK-KTYPDNSFDVIYSRDTILHIQ----DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccc-CCCCCCCEEEEEECCcccccC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 433 222236899999998887443 36789999999999999999865
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=144.60 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=81.4
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHH---HcCCCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~---e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+..+... ....++.+...|.+.+|+++++||+|+|+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~- 153 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY- 153 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec-
Confidence 38999999999999888763 578887777666554432211 112367888999999999999999999998
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.+|+.+++..+++|+.|+|||||++++.+..
T Consensus 154 ~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 154 GLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred ccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 5888899999999999999999999987543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-16 Score=124.36 Aligned_cols=93 Identities=29% Similarity=0.504 Sum_probs=73.4
Q ss_pred EEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccccccHH
Q 013393 49 LDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 126 (444)
Q Consensus 49 LDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~ 126 (444)
||+|||+|..+..++++. +.++.+.|+++.+++.++++.. ...+...|...+|+++++||+|+|.. +++|.++..
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeeccCHH
Confidence 899999999999998861 2244444666677777777643 34588999999999999999999998 577778999
Q ss_pred HHHHHHHhhcCCCeEEEE
Q 013393 127 ILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 127 ~~L~ei~rvLkPGG~lvi 144 (444)
.+++|+.|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=144.57 Aligned_cols=160 Identities=16% Similarity=0.251 Sum_probs=108.1
Q ss_pred ccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc---CC
Q 013393 17 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER---GI 90 (444)
Q Consensus 17 f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~---~~ 90 (444)
++.|-....+.+.+.+.+ +++. +|||||||+|..+..+++. .|+++|+++ .+++.|+++ ..
T Consensus 33 ~~~gg~~~~~~~l~~l~l-----~~~~---~VLDiGcG~G~~a~~la~~~~~~v~giD~s~-----~~~~~a~~~~~~~~ 99 (263)
T PTZ00098 33 ISSGGIEATTKILSDIEL-----NENS---KVLDIGSGLGGGCKYINEKYGAHVHGVDICE-----KMVNIAKLRNSDKN 99 (263)
T ss_pred CCCCchHHHHHHHHhCCC-----CCCC---EEEEEcCCCChhhHHHHhhcCCEEEEEECCH-----HHHHHHHHHcCcCC
Confidence 333333334555555543 3333 8999999999999888763 456665554 454555544 23
Q ss_pred CcEEEEecCccCCCCCCCccEEEecccccccc-ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC--hhhHH---------
Q 013393 91 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRR--------- 158 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~--~~~~~--------- 158 (444)
++.+...|....|+++++||+|++..+.+|.. .+...++++++++|||||+|+++++...... .....
T Consensus 100 ~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
T PTZ00098 100 KIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYT 179 (263)
T ss_pred ceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCC
Confidence 57788888888899999999999987544442 3778999999999999999999875322110 11110
Q ss_pred --HHHHHHHHHHhcCeEEEeeecceeEeeccCc
Q 013393 159 --IWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 189 (444)
Q Consensus 159 --~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~ 189 (444)
.-.++.++++++||+.+...+....|.....
T Consensus 180 ~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~ 212 (263)
T PTZ00098 180 LIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQ 212 (263)
T ss_pred CCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHH
Confidence 1137788999999998887776666655443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=147.50 Aligned_cols=133 Identities=19% Similarity=0.366 Sum_probs=97.2
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..+|||||||+|.++..++++ .|+|+|+++.++..+.. .+.+.+ .++.+.+.|...+|+++++||+|+|..+ +
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~-~ 196 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES-G 196 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-h
Confidence 348999999999999999874 67788777766544432 233333 3578889999999999999999999884 7
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-------CChhhHH---------------HHHHHHHHHHhcCeEEEee
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-------HDPENRR---------------IWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-------~~~~~~~---------------~~~~l~~l~~~~gf~~v~~ 177 (444)
+|.++...+++++.|+|||||+|++++..... ..+.... .-.++.+++++.||..+..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 77789999999999999999999997643210 0001000 1236777888888877765
Q ss_pred ec
Q 013393 178 KD 179 (444)
Q Consensus 178 ~~ 179 (444)
.+
T Consensus 277 ~d 278 (340)
T PLN02244 277 ED 278 (340)
T ss_pred ee
Confidence 43
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-15 Score=132.06 Aligned_cols=121 Identities=29% Similarity=0.540 Sum_probs=88.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+.+. .++++|+++.++ +. ........+....+.++++||+|+|+. +++|++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~~~ 92 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMI-----EK-----RNVVFDNFDAQDPPFPDGSFDLIICND-VLEHLP 92 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHH-----HH-----TTSEEEEEECHTHHCHSSSEEEEEEES-SGGGSS
T ss_pred CEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHH-----hh-----hhhhhhhhhhhhhhccccchhhHhhHH-HHhhcc
Confidence 48999999999999999876 566666665443 32 333444444444556788999999998 699999
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCCCC----------C-Chh--hH--HHHHHHHHHHHhcCeEEEee
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEAYA----------H-DPE--NR--RIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~~~----------~-~~~--~~--~~~~~l~~l~~~~gf~~v~~ 177 (444)
++..+|+++.++|||||+++++++.... . ... .. -.-.++..++++.||+++++
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 9999999999999999999999876421 0 000 00 01248899999999988753
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-14 Score=133.36 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=80.6
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+..+.+.....++.+...|...+++++++||+|+++. .++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-GLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec-ccc
Confidence 38999999999999988763 578888777665444433332223356788888888888889999999988 578
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+.++...+++++.++|+|||++++.++.
T Consensus 126 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 126 NVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred cCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 8899999999999999999999987643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=143.69 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=98.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..+++. .|+|+|+++.++..++.. +...+ .++.+...+++.+++++++||+|+|.. +++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-VIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhh-HHHh
Confidence 48999999999999999874 567776666555444322 11112 257788888888888888999999998 6888
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCC---------------ChhhHH------HHHHHHHHHHhcCeEEEeeecc
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------------DPENRR------IWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~---------------~~~~~~------~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
+.++..+++++.++|||||.+++++++.... .+.... .-.++..++++.||+++...+.
T Consensus 211 v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 211 VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 9999999999999999999999987653210 001111 1248899999999998877554
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=141.46 Aligned_cols=212 Identities=14% Similarity=0.248 Sum_probs=143.4
Q ss_pred ecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHH
Q 013393 9 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 9 ~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a 85 (444)
.|++...........-++.+.+.+. |+||. +|||||||.|.++.+++++ +|+|+++|+.+...++.. +
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~-----L~~G~---~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r-~ 115 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLG-----LKPGM---TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKR-I 115 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcC-----CCCCC---EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHH-H
Confidence 4555555555555555666666664 56666 9999999999999999985 566776666555444422 2
Q ss_pred HHcCC--CcEEEEecCccCCCCCCCccEEEeccccccccc--cHHHHHHHHHhhcCCCeEEEEEcCCCCC----CChhhH
Q 013393 86 LERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA----HDPENR 157 (444)
Q Consensus 86 ~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~~~~----~~~~~~ 157 (444)
++.|. ++.+...|...+. +.||-|++.. .++|.. +.+.+|+.++++|+|||.+++.+..... ......
T Consensus 116 ~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i 191 (283)
T COG2230 116 AARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFI 191 (283)
T ss_pred HHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHH
Confidence 33344 4667777766654 4499999998 577754 4889999999999999999986533221 111111
Q ss_pred --HHH--------HHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCcccCCCCcchhhhhcccccccccc
Q 013393 158 --RIW--------NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYS 227 (444)
Q Consensus 158 --~~~--------~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p 227 (444)
.+| ..+.....+.||.+...+.....|.+++..++..+....... .-..++....-|-..+.+|...++
T Consensus 192 ~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a-~~~~~e~~~r~w~~yl~~~~~~Fr 270 (283)
T COG2230 192 DKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEA-IALYDERFYRMWELYLAACAAAFR 270 (283)
T ss_pred HHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhc
Confidence 122 366777899999999999988899999888877655432111 111223445668999999999988
Q ss_pred ccccccc
Q 013393 228 AKMHHEK 234 (444)
Q Consensus 228 ~~~~~~~ 234 (444)
.+..+..
T Consensus 271 ~~~~~~~ 277 (283)
T COG2230 271 AGYIDVF 277 (283)
T ss_pred cCCceEE
Confidence 6654443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-14 Score=134.85 Aligned_cols=94 Identities=22% Similarity=0.398 Sum_probs=76.4
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..+++. .|+|+|++ +.+++.|+++ ++.+...|.+.++ ++++||+|+|+. ++||
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s-----~~~~~~a~~~--~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~ 101 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGAVIEALDSS-----PEMVAAARER--GVDARTGDVRDWK-PKPDTDVVVSNA-ALQW 101 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHhc--CCcEEEcChhhCC-CCCCceEEEEeh-hhhh
Confidence 48999999999999999864 46666665 4555666554 4667788887775 567999999998 5889
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++...++++++++|||||+++++.+.
T Consensus 102 ~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 102 VPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 999999999999999999999997654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-14 Score=135.59 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=83.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||||||-|.++..|++. .|+|+|++...+..++ ..|.+.+..+.+.....+++....++||+|+|.. +++|.+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEHv~ 138 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEHVP 138 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHccC
Confidence 38999999999999999985 5677766665554444 3445557777777777777776668999999999 689999
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
|++.+++++.+.+||||.+++|+++
T Consensus 139 dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 139 DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9999999999999999999999887
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-14 Score=140.29 Aligned_cols=201 Identities=16% Similarity=0.304 Sum_probs=116.7
Q ss_pred CCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc--
Q 013393 11 PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-- 88 (444)
Q Consensus 11 pg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~-- 88 (444)
+...+.......+-++.+.+.+ .+++|. +|||||||.|.++.+++++. ++.+.++.+|+.|.+.++++
T Consensus 37 ~~~~~~Le~AQ~~k~~~~~~~~-----~l~~G~---~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~ 106 (273)
T PF02353_consen 37 DEGDDTLEEAQERKLDLLCEKL-----GLKPGD---RVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIR 106 (273)
T ss_dssp SSTT--HHHHHHHHHHHHHTTT-----T--TT----EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHh-----CCCCCC---EEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHH
Confidence 3434444444444444444444 456666 99999999999999999861 23334444555555555443
Q ss_pred --CC--CcEEEEecCccCCCCCCCccEEEecccccccc--ccHHHHHHHHHhhcCCCeEEEEEcCCCC-------CCC--
Q 013393 89 --GI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAY-------AHD-- 153 (444)
Q Consensus 89 --~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~~~-------~~~-- 153 (444)
+. .+.+...|..+++. +||.|+|..+ ++|. ++...+|+++.++|||||.+++...... ...
T Consensus 107 ~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~-~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~ 182 (273)
T PF02353_consen 107 EAGLEDRVEVRLQDYRDLPG---KFDRIVSIEM-FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSS 182 (273)
T ss_dssp CSTSSSTEEEEES-GGG------S-SEEEEESE-GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCC
T ss_pred hcCCCCceEEEEeeccccCC---CCCEEEEEec-hhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCc
Confidence 43 46777888777653 8999999984 7765 5778999999999999999997542211 000
Q ss_pred h-hhHHHH--------HHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCcccC-CCCcchhhhhcccccc
Q 013393 154 P-ENRRIW--------NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS-DDDPDVTWNVLMKACI 223 (444)
Q Consensus 154 ~-~~~~~~--------~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~-~~~~~~awy~~l~~ci 223 (444)
. ....+| .++...+++.||++....+....|.+++..+-..+..+. ..+... ++.....|-..|..|.
T Consensus 183 ~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~--~~i~~~~~~~f~r~w~~yl~~~~ 260 (273)
T PF02353_consen 183 DFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENFDANR--EEIIALFDEEFYRMWRYYLAYCA 260 (273)
T ss_dssp HHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTH--HHHHHHSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 011122 366677889999999999888888888877655544321 111111 2233445666666665
Q ss_pred cccc
Q 013393 224 SPYS 227 (444)
Q Consensus 224 ~~~p 227 (444)
-.+.
T Consensus 261 ~~F~ 264 (273)
T PF02353_consen 261 AGFR 264 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=132.64 Aligned_cols=147 Identities=20% Similarity=0.242 Sum_probs=101.1
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCc
Q 013393 25 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTK 100 (444)
Q Consensus 25 ~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~ 100 (444)
.+.+.+++... + ....+|||+|||+|.++..+++. .|+++|+++.++..++. .+.+.+ .++.+...+..
T Consensus 31 ~~~~~~~l~~l----~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~ 103 (255)
T PRK11036 31 WQDLDRLLAEL----P--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQ 103 (255)
T ss_pred HHHHHHHHHhc----C--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHH
Confidence 44555555432 1 22348999999999999999885 56777777665544442 222233 34677777877
Q ss_pred cCC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-------------------------Ch
Q 013393 101 RLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-------------------------DP 154 (444)
Q Consensus 101 ~lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-------------------------~~ 154 (444)
.++ +++++||+|+|.. +++|..++..++.++.++|||||++++...+.... .+
T Consensus 104 ~l~~~~~~~fD~V~~~~-vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 182 (255)
T PRK11036 104 DIAQHLETPVDLILFHA-VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSP 182 (255)
T ss_pred HHhhhcCCCCCEEEehh-HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCC
Confidence 664 5678999999998 58888999999999999999999998764332100 00
Q ss_pred hhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 155 ENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 155 ~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
...-.-.++.+++++.||+++...+
T Consensus 183 ~~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 183 DYPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred CCCCCHHHHHHHHHHCCCeEeeeee
Confidence 0001124778889999999887665
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=133.24 Aligned_cols=99 Identities=24% Similarity=0.438 Sum_probs=82.1
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
..+|||+|||+|.++..+++. .++++|+ ++.+++.++++.....+...|.+.+|+++++||+|+|+. .++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~-----s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDL-----SPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEEC-----CHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhc
Confidence 458999999999999988764 4555555 456667777765556778889999999989999999988 58999
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.+...++.++.++|||||.++++++..
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999999999999999987653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=135.36 Aligned_cols=132 Identities=22% Similarity=0.209 Sum_probs=95.6
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHH-HcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~-e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
++|||||||+|.++..+++. .|+|+|.++.++.+....... ....++.+...+++.+|+ +++||+|+|.. +++|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhhc
Confidence 48999999999999999874 488888887665433211111 113467888888889988 68899999988 5788
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCC-----CChhh-H---------HHHHHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPEN-R---------RIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-----~~~~~-~---------~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
..++..+|++++++|+|||.+++.+..... ..+.. . ..-..+.++++++||+.+....
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 899999999999999999999986421110 00110 0 0124788899999998876644
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=142.64 Aligned_cols=140 Identities=24% Similarity=0.334 Sum_probs=98.8
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||+|..+..+++. .++|+|+++.++..+..+ +.....++.+...|....++++++||+|+|.. +++|.
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l~h~ 345 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TILHI 345 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECC-ccccc
Confidence 48999999999998888863 567777665544333321 11223457788889888888888999999988 47777
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC--hhhHH----------HHHHHHHHHHhcCeEEEeeecceeEeecc
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRR----------IWNAMYDLLKSMCWKIVSKKDQTVIWAKP 187 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~--~~~~~----------~~~~l~~l~~~~gf~~v~~~~~~~~w~k~ 187 (444)
++...++++++|+|||||+++++++...... ..... .-..+.++++++||+++.....+..|...
T Consensus 346 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~ 422 (475)
T PLN02336 346 QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQV 422 (475)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecchHHHHHH
Confidence 9999999999999999999999865422111 11100 12366788999999888666544444333
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=125.11 Aligned_cols=136 Identities=17% Similarity=0.295 Sum_probs=90.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||+|||+|.++.+|+++ .|+++|+++.++..++...+ ..+. ++.+.+.|...++++ ++||+|+|+.+ +||.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~~~ 108 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKA-AENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-LMFL 108 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HcCCCcceEEecChhhCCcC-CCcCEEEEecc-hhhC
Confidence 37999999999999999985 57888887766655543333 3333 467777887777764 67999999984 6665
Q ss_pred c--cHHHHHHHHHhhcCCCeEEEEEc-CCC--CC--CChhhHHHHHHHHHHHHhcCeEEEeeecceeEeec
Q 013393 123 Q--RDGILLLELDRLLRPGGYFVYSS-PEA--YA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 186 (444)
Q Consensus 123 ~--d~~~~L~ei~rvLkPGG~lvis~-p~~--~~--~~~~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k 186 (444)
. +...+++++.++|||||++++.. ... .. ..+...-.-.++.+.++ ||+++........+.+
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~ 177 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHR 177 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcc
Confidence 4 45689999999999999965432 111 10 00110011135566665 8988776554444444
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-13 Score=128.94 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=93.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|..+..+++. .|+++|+++.++..+....+ ..+ .++.+...|.+.+++++++||+|+++. ++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~-~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~-v~ 156 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR-KAGYTNVEFRLGEIEALPVADNSVDVIISNC-VI 156 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH-HcCCCCEEEEEcchhhCCCCCCceeEEEEcC-cc
Confidence 49999999999877665542 47788777665544443222 223 367788888888998888999999876 68
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhh----H----------HHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----R----------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~----~----------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++.++...+++++.++|||||+|++++.......+.. . ....++.+++++.||..+...
T Consensus 157 ~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 157 NLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred cCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 8888999999999999999999999754321111111 0 123467888899999876543
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-13 Score=126.90 Aligned_cols=106 Identities=24% Similarity=0.304 Sum_probs=84.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh----------CCceEEEcCcccchHHHHHHHHHcCC----CcEEEEecCccCC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLP 103 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~----------~~V~gvdis~~dis~a~i~~a~e~~~----~~~~~~~d~~~lp 103 (444)
.|.|+.. .++||++||||..+..+++ .+|+.+|++|.++..+.. .+.+++. .+.+...|+++||
T Consensus 95 ~L~p~~~-m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 95 KLGPGKG-MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred ccCCCCC-CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCC
Confidence 3445443 5799999999998887765 268888888887766553 3333433 3677888999999
Q ss_pred CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 104 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 104 ~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|++.+||....++ .+....+.++.++|++|+|||||+|.+-.
T Consensus 173 Fdd~s~D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 173 FDDDSFDAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCCcceeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999998 47777999999999999999999999744
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=122.10 Aligned_cols=117 Identities=24% Similarity=0.359 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 96 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~ 96 (444)
..|.+.+.+.+.+ .+ ..+|||+|||+|.++..+++. .++++|+++..+..+..+ ......++.+..
T Consensus 5 ~~~~~~~~~~~~~-----~~---~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~ 75 (241)
T PRK08317 5 RRYRARTFELLAV-----QP---GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75 (241)
T ss_pred HHHHHHHHHHcCC-----CC---CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEe
Confidence 3444455555543 22 348999999999999988763 467776665444333221 111245677888
Q ss_pred ecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 97 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 97 ~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.|...+++++++||+|++.. ++++..+...+++++.++|||||++++..+.
T Consensus 76 ~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 76 GDADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 88888888888999999998 4777899999999999999999999998754
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-13 Score=132.82 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=96.5
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||||||+|.++..+++. .++++|+++.+ ++.|+++ ..++.+...|.+.+++++++||+|+++. .+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~m-----L~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~L 188 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ-----LAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG-SI 188 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHH-----HHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcC-hh
Confidence 48999999999998888763 46666665544 4444443 2356778888888999889999999987 57
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCC--CChhhH------HHHHHHHHHHHhcCeEEEeeecceeEe
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENR------RIWNAMYDLLKSMCWKIVSKKDQTVIW 184 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~--~~~~~~------~~~~~l~~l~~~~gf~~v~~~~~~~~w 184 (444)
++.++...+++++.++|||||.+++..+.... ...... ...+++.+++++.||+.+........|
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 77789999999999999999999886543110 000000 123578899999999988766544444
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=128.30 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=91.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHH---cCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE---RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e---~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
++|||||||+|.++..++.. .|+|+|.++.++.+.. .++. ....+.+...+.+.+|.. .+||+|+|+. ++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~--~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-vL 198 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE--AVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-VL 198 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-hh
Confidence 48999999999998888764 4778887776554321 1221 123566677788888764 5899999998 57
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-----Chhh-HH---------HHHHHHHHHHhcCeEEEeeec
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----DPEN-RR---------IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-----~~~~-~~---------~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+|..++..+|++++++|||||.|++.+...... .+.. .. .-.++...++++||+.+....
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 777999999999999999999999864321100 0111 00 124778899999999886543
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=120.23 Aligned_cols=137 Identities=15% Similarity=0.254 Sum_probs=90.9
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~- 122 (444)
.+|||+|||+|.++.+++++ .|+++|+++.++..+.. .+...+.++.+...|....+++ ++||+|+|+.+ +++.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~~~~ 108 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FMFLQ 108 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecc-cccCC
Confidence 37999999999999999885 57888887766655443 3344466667777776666654 57999999884 6664
Q ss_pred -ccHHHHHHHHHhhcCCCeEEEEEcC-C--CCCC--ChhhHHHHHHHHHHHHhcCeEEEeeecceeEeecc
Q 013393 123 -QRDGILLLELDRLLRPGGYFVYSSP-E--AYAH--DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 187 (444)
Q Consensus 123 -~d~~~~L~ei~rvLkPGG~lvis~p-~--~~~~--~~~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~ 187 (444)
.+...+++++.++|||||++++... . .+.. .....-.-.++.++++ +|+++........|.+.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 3456899999999999999665421 1 1110 0111122346666665 58887776555455443
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.7e-13 Score=125.29 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=93.5
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+|||||||+|.++..+++. .++|+|+++.++..+.... .+.+ .++.+...|....|++ ++||+|++.. +++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~-~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE-VIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHH-HHH
Confidence 7999999999999988763 4667776655443333222 2222 3457777887666665 5899999988 577
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhh-------HHHHHHHHHHHHhcCeEEEeeecceeEe
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN-------RRIWNAMYDLLKSMCWKIVSKKDQTVIW 184 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~-------~~~~~~l~~l~~~~gf~~v~~~~~~~~w 184 (444)
+..+...+|+++.++|||||+++++++......... ...-.++.+++++.||+++........|
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 788999999999999999999999865321110000 0112467788899999988776544433
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-13 Score=118.73 Aligned_cols=100 Identities=23% Similarity=0.426 Sum_probs=80.0
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC--CCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++ ..++|+|+++.++..+... +++.+. ++.+.+.|..+++ ++ +.||+|++..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~-~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~- 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKR-AKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG- 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHH-HHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES-
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcc-cccccccccceEEeehhccccccC-CCeeEEEEcC-
Confidence 4899999999999999993 3578888777666555532 233333 6899999988887 66 7899999987
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++++..+...+++++.++|++||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5788889999999999999999999997665
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=125.31 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=75.6
Q ss_pred CeEEEECCCcchHHHHHhh------CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~------~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||||||+|..+..+++ ..++++|+++.++..++.+..... ..++.+...|...+|++ .||+|+|+. .
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~-~ 134 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF-T 134 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh-H
Confidence 3899999999999887765 257788777776655554443322 22578888888887765 499999988 4
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+|++++. ..++++++++|||||.|++++..
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 7776543 58999999999999999998744
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=127.33 Aligned_cols=97 Identities=23% Similarity=0.375 Sum_probs=79.0
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
..+|||||||+|.++..+++. .++|+|++ +.+++.|+++..++.+...|...++ ++++||+|+|+. .+|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s-----~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 104 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSS-----PAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SLQ 104 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-Chh
Confidence 348999999999999998863 46666555 4566677776667888888877665 456899999998 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
|..+...+++++.++|||||.++++.+.
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 9999999999999999999999998654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.4e-13 Score=111.18 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=75.6
Q ss_pred CeEEEECCCcchHHHHHhh--C--CceEEEcCcccchHHHHHHHHH-cCCCcEEEEecC-ccCCCCCCCccEEEecc-cc
Q 013393 46 RNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGT-KRLPYPSRSFELAHCSR-CR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~--~V~gvdis~~dis~a~i~~a~e-~~~~~~~~~~d~-~~lp~~~~sFDlI~~~~-~~ 118 (444)
.+|||+|||+|.++.++++ . .++++|+++.++..++.+.... ...++.+...|. ..... .+.||+|++.. +.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCcc
Confidence 3899999999999999988 3 6888888887776666544232 256788888888 33444 35699999988 32
Q ss_pred cccc--ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 119 IDWL--QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 119 l~~~--~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.++. ++..++++++.+.|+|||++++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222 456789999999999999999964
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=123.94 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=70.1
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||||.++..+++. .|+|+| +++.|++.|+++. .+.+.|.+.+|+++++||+|+|+. .+++.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD-----~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~~ 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALD-----YAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHAS 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEEC-----CCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecC-hhhcc
Confidence 48999999999999998875 455555 5555666666542 346788899999999999999999 57888
Q ss_pred ccHHHHHHHHHhhcCCCe
Q 013393 123 QRDGILLLELDRLLRPGG 140 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG 140 (444)
+|.+.+++|+.|+|||.+
T Consensus 124 ~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCHHHHHHHHHHHhcCce
Confidence 999999999999999953
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.9e-12 Score=115.60 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=87.9
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|..+..++. ..|+++|.++.++..++.. +++.+. ++.+...|..+++. +++||+|+|+.
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---- 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---- 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence 4899999999999888875 3688888887766555533 333343 47888888877776 67999999864
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..+...++++++++|||||++++..... .-..+.++++..||.+...
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~~---------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGRD---------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------hHHHHHHHHHhcCceEeee
Confidence 2466789999999999999999975442 2346788888889976544
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-12 Score=133.25 Aligned_cols=178 Identities=16% Similarity=0.249 Sum_probs=117.7
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEecccccccc--
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-- 122 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~-- 122 (444)
+|||||||+|.++..+++.. +..+.+.|+++.+++.|+++ +.++.+...|...+ +++||.|++.. .++|.
T Consensus 170 rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~ehvg~ 243 (383)
T PRK11705 170 RVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG-MFEHVGP 243 (383)
T ss_pred EEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC-chhhCCh
Confidence 89999999999999998741 22333444455566666554 34456666666554 47899999987 46665
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC---hhh----------HHHHHHHHHHHHhcCeEEEeeecceeEeeccCc
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHD---PEN----------RRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 189 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~---~~~----------~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~ 189 (444)
.+...+++++.++|||||+++++........ ... ...-.++...++ .+|.+.........|.+++.
T Consensus 244 ~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~ 322 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLM 322 (383)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHH
Confidence 3457899999999999999999653211000 000 011234555555 58998888888889999998
Q ss_pred hhhHhhcCCCCCCCcccC-CCCcchhhhhcccccccccccccccc
Q 013393 190 NSCYLKRVPGSRPPLCSS-DDDPDVTWNVLMKACISPYSAKMHHE 233 (444)
Q Consensus 190 ~~c~~~~~~~~~p~lc~~-~~~~~~awy~~l~~ci~~~p~~~~~~ 233 (444)
.+...+.... +..... ++.....|-..+..|...+..+....
T Consensus 323 ~W~~~f~~~~--~~~~~~~~~~~~r~w~~yl~~~~~~F~~~~~~~ 365 (383)
T PRK11705 323 AWHENFEAAW--PELADNYSERFYRMWRYYLLSCAGAFRARDIQL 365 (383)
T ss_pred HHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 8877666531 222222 34556779999999987777654443
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-13 Score=110.61 Aligned_cols=92 Identities=28% Similarity=0.521 Sum_probs=67.2
Q ss_pred EEEECCCcchHHHHHhhC-------CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 48 VLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 48 VLDVGCGtG~~a~~La~~-------~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
|||+|||+|..+..+++. .++++|+++.++..+..+ ..+.+.++.+.+.|..++++.+++||+|+|+.++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~-~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKR-FSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHH-SHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHh-chhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999888753 456666665554433322 222356899999999999888889999999776677
Q ss_pred cccc--HHHHHHHHHhhcCCCe
Q 013393 121 WLQR--DGILLLELDRLLRPGG 140 (444)
Q Consensus 121 ~~~d--~~~~L~ei~rvLkPGG 140 (444)
|..+ ...+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 7553 3589999999999998
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-13 Score=110.74 Aligned_cols=93 Identities=26% Similarity=0.409 Sum_probs=55.8
Q ss_pred EEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-CC-CCCCccEEEecccccccc
Q 013393 49 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PY-PSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 49 LDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p~-~~~sFDlI~~~~~~l~~~ 122 (444)
||||||+|.++..+++. .++++|+++.++..++.+..............+.... .. +.++||+|+++. ++||.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999999888763 6788999988875555444443333333333332222 12 235999999998 68888
Q ss_pred ccHHHHHHHHHhhcCCCeEE
Q 013393 123 QRDGILLLELDRLLRPGGYF 142 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~l 142 (444)
++...+++++.++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=117.58 Aligned_cols=98 Identities=27% Similarity=0.466 Sum_probs=79.4
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|++ +.+++.++++. .++.+...|....++++++||+|+|+. ++|
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l~ 109 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDIS-----AGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-ALQ 109 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeCh-----HHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hhh
Confidence 58999999999999999874 34666555 45555555442 356788889888888889999999998 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
|..+...++.++.++|+|||+++++.+..
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 88899999999999999999999987653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-12 Score=124.10 Aligned_cols=96 Identities=27% Similarity=0.450 Sum_probs=74.6
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. ...+..+.+.|+++.+++.|+++..++.+.+.|...+|+++++||+|++..+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------ 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA------ 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC------
Confidence 47999999999999988763 1111233444556677777877777888999999999999999999998653
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
...+.++.|+|||||+|++..|..
T Consensus 161 --~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 --PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred --CCCHHHHHhhccCCCEEEEEeCCC
Confidence 124689999999999999987764
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-12 Score=123.14 Aligned_cols=129 Identities=19% Similarity=0.355 Sum_probs=87.4
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~- 123 (444)
+|||+|||+|.++.++++. .|+++|+++.++..++ +.+.+.+.++.+...|....++ +++||+|+|+. ++++..
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~~ 199 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLNR 199 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCCH
Confidence 7999999999999999875 5777777766554433 3444556677777777766555 57899999987 477654
Q ss_pred -cHHHHHHHHHhhcCCCeEEEEEcCC---CCCCC-h-hhHHHHHHHHHHHHhcCeEEEeeecc
Q 013393 124 -RDGILLLELDRLLRPGGYFVYSSPE---AYAHD-P-ENRRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 124 -d~~~~L~ei~rvLkPGG~lvis~p~---~~~~~-~-~~~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
+...+++++.++|+|||++++.... .+... + ...-.-.++.++.+ +|+++.....
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~ 260 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNEN 260 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEecc
Confidence 4568999999999999997664211 11000 0 11112236667766 4888776443
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-12 Score=117.50 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=98.9
Q ss_pred CCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
...++|.|+|||+|..+..|+++- -+..|+++|.|.+|+..|+++.++++|...|...+. |+..+|+++++. +++|+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vlqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VLQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hhhhc
Confidence 455689999999999999998852 233566667788888999999999999999988875 457899999887 79999
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+|...+|..+...|.|||.+.++.|..... ....-+.+.+++.-|.
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-----psH~~mr~~A~~~p~~ 151 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNLDE-----PSHRLMRETADEAPFA 151 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCccCc-----hhHHHHHHHHhcCchh
Confidence 999999999999999999999998885422 1234556666665553
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.9e-12 Score=116.74 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecC-ccCC--CCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLP--YPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~lp--~~~~sFDlI~~~~~ 117 (444)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+...|+ +.++ +++++||+|+++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 458999999999999988763 5788888877665555333322224678888887 6666 77789999998763
Q ss_pred cccccc--------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 118 RIDWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 118 ~l~~~~--------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
.+|.. ....+++++.++|||||+|+++.+. ......+.+.+++.||.+.
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--------HHHHHHHHHHHHhCccccc
Confidence 44422 1367999999999999999997654 2334567777888888554
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-11 Score=115.53 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=74.8
Q ss_pred CeEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+..+..... ..++.+...|+..++++ .+|+|+|+. .
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~-~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF-T 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec-c
Confidence 38999999999999888763 47777777665544443222111 23578888888888765 589999988 5
Q ss_pred ccccc--cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+||.. +...++++++++|||||.++++++.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 77764 3468999999999999999998754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=117.11 Aligned_cols=143 Identities=22% Similarity=0.340 Sum_probs=100.2
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 90 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~ 90 (444)
||..|....-.++.+.+.+. ++++|||+|||+|.++...++. .++|+|++|..+..++ +.++.++.
T Consensus 142 GTG~HpTT~lcL~~Le~~~~----------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v 210 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLLK----------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGV 210 (300)
T ss_pred CCCCChhHHHHHHHHHHhhc----------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCC
Confidence 67777777777777776663 3458999999999999888773 6899999998775555 45555555
Q ss_pred CcEEEEecCccCCCCC-CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh
Q 013393 91 PSTLGVLGTKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 169 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~-~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~ 169 (444)
+..........+..+. ++||+|+||- +. .-...+..++.+.|||||++++|..- .+.-+.+.+.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~DvIVANI--LA--~vl~~La~~~~~~lkpgg~lIlSGIl--------~~q~~~V~~a~~~ 278 (300)
T COG2264 211 ELLVQAKGFLLLEVPENGPFDVIVANI--LA--EVLVELAPDIKRLLKPGGRLILSGIL--------EDQAESVAEAYEQ 278 (300)
T ss_pred chhhhcccccchhhcccCcccEEEehh--hH--HHHHHHHHHHHHHcCCCceEEEEeeh--------HhHHHHHHHHHHh
Confidence 5311111122222333 5899999986 22 22358999999999999999998633 2234567888888
Q ss_pred cCeEEEeeec
Q 013393 170 MCWKIVSKKD 179 (444)
Q Consensus 170 ~gf~~v~~~~ 179 (444)
.||+++....
T Consensus 279 ~gf~v~~~~~ 288 (300)
T COG2264 279 AGFEVVEVLE 288 (300)
T ss_pred CCCeEeEEEe
Confidence 9998876643
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=112.94 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=80.9
Q ss_pred eEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCCCcE-EEEecCccCC-CCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~~~~-~~~~d~~~lp-~~~~sFDlI~~~~~~l~~ 121 (444)
.||+||||||..-.++-. ..|+++|-++.+-+-+...++..+..++. |++++.+.+| .+++++|.|+|..+ +.-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-LCS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-LCS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-Eec
Confidence 489999999976665542 25777777776665555555555666766 8899999999 78999999999995 666
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++|+.+.|+|+.|+|||||++++..+-
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 799999999999999999999996544
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=110.64 Aligned_cols=96 Identities=21% Similarity=0.361 Sum_probs=75.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++ ..++.+...|..++++++++||+|+++.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~-----~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~- 114 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS-----EMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF- 114 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH-----HHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee-
Confidence 48999999999999988764 455666554 444444443 2357788888888888778999999988
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
.+++..+...+++++.+.|+|||++++.+.
T Consensus 115 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 115 GLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 577778899999999999999999998653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-12 Score=119.86 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=70.7
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcC-------CC----cEEEEecCccCCCCCCCccEEEe
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-------IP----STLGVLGTKRLPYPSRSFELAHC 114 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~-------~~----~~~~~~d~~~lp~~~~sFDlI~~ 114 (444)
++|||+|||+|.++..|++. |.+++++|+++.+++.|++.. .+ +.+...+.+.+ .+.||.|+|
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence 47999999999999999985 234444455555566665541 11 22333334443 345999999
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+. +++|..|+..++..+.+.|||||.+++++.+
T Consensus 165 se-vleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 165 SE-VLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HH-HHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99 6888999999999999999999999998754
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=120.26 Aligned_cols=133 Identities=16% Similarity=0.256 Sum_probs=82.9
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcch----HHHHHhhCC----ceEEEcCcccchHHHHHHH
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVAS----FGAYLLSHD----IIAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~----~a~~La~~~----V~gvdis~~dis~a~i~~a 85 (444)
-|.|.+-..++-.....+++...... +.....+|+|+|||||. ++..+++.. .....+.+.|+++.+++.|
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~-~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASR-RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhc-CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 35555555544443333333211111 11233489999999994 565555421 0123444445555555555
Q ss_pred HHcC--------------------------------CCcEEEEecCccCCCCCCCccEEEeccccccccc--cHHHHHHH
Q 013393 86 LERG--------------------------------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLE 131 (444)
Q Consensus 86 ~e~~--------------------------------~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~--d~~~~L~e 131 (444)
++.- ..+.|.+.|....+++.++||+|+|.++ ++|.+ +...++++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv-l~yf~~~~~~~~l~~ 227 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV-LIYFDEPTQRKLLNR 227 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechh-HHhCCHHHHHHHHHH
Confidence 5421 2467888888888777889999999985 56654 33589999
Q ss_pred HHhhcCCCeEEEEEcCC
Q 013393 132 LDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 132 i~rvLkPGG~lvis~p~ 148 (444)
++++|+|||+|++....
T Consensus 228 l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 228 FAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHhCCCeEEEEECcc
Confidence 99999999999996544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-11 Score=111.46 Aligned_cols=93 Identities=25% Similarity=0.409 Sum_probs=72.1
Q ss_pred eEEEECCCcchHHHHHhh-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc-cCC-CCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLP-YPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~-~lp-~~~~sFDlI~~~~~~l~~~~ 123 (444)
+|||+|||.|.+..+|.+ +++ +..+.+++++.+..+.++|.++ .+.|.+ .++ |++++||.|+++. +++...
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsq-tLQ~~~ 89 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQ-TLQAVR 89 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHh-HHHhHh
Confidence 899999999999999987 333 3334456677778888888875 455533 354 8999999999999 588889
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++.+|+|+.|+ |...+++-|+
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecC
Confidence 999999999777 5577776665
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-11 Score=109.39 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=83.1
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++|||+|||+|.++..++. ..|+++|.++.++..+.. .+++.+. ++.+...|...++. +++||+|+|.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h-
Confidence 4899999999998888764 358888888876654442 3333343 57888888877643 57899999864 2
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.+...+++.+.++|+|||.+++..... .......+.+.+...|++.+....
T Consensus 119 --~~~~~~~~~~~~~LkpgG~lvi~~~~~------~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 --ASLNVLLELTLNLLKVGGYFLAYKGKK------YLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred --hCHHHHHHHHHHhcCCCCEEEEEcCCC------cHHHHHHHHHhhhhcCceEeeccc
Confidence 355678899999999999999864321 122233344444447787776644
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=110.43 Aligned_cols=101 Identities=19% Similarity=0.298 Sum_probs=76.2
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHH-cCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e-~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+.... ...++.+...|...+++++++||+|+++. .+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-GL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-cc
Confidence 48999999999999888753 4667766665444333222211 12356778888888887778999999988 47
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
++..+...++.++.++|+|||.+++.+.
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 7778999999999999999999988643
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.6e-11 Score=109.32 Aligned_cols=122 Identities=15% Similarity=0.218 Sum_probs=85.3
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC---CCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp---~~~~sFDlI~~~~~~ 118 (444)
.+|||||||+|.++..++++ .++|+|+++..+..+..+..+....++.+...|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p- 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP- 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-
Confidence 47999999999999988874 68888888776655554333332336788888876643 45678999998763
Q ss_pred ccccccH--------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-eEEEe
Q 013393 119 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 176 (444)
Q Consensus 119 l~~~~d~--------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g-f~~v~ 176 (444)
.+|.... ..+++++.++|||||.|++++.. ......+.+.+...+ |+.+.
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--------~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--------EPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--------HHHHHHHHHHHHhCCCeEecc
Confidence 5553321 47999999999999999997544 123445555555544 76554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-11 Score=115.60 Aligned_cols=132 Identities=26% Similarity=0.325 Sum_probs=99.5
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CC-CCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp-~~~~sFDlI~~~~~~l~~~ 122 (444)
.+++||+|||||..+..|-.. +-++++.|+|++|+..|.+++.--.+.+.+... ++ ..++.||+|++.. ++.|+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl~Yl 201 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VLPYL 201 (287)
T ss_pred cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HHHhh
Confidence 679999999999999888663 335666788899999999998765555555432 22 3467899999988 79999
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCC--C--CChhhH---HHHHHHHHHHHhcCeEEEeeecc
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAY--A--HDPENR---RIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~--~--~~~~~~---~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
-+.+.++.-+...|+|||.|.||.-... . ....+. +.-..+..+++..||+++..+..
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 9999999999999999999999863311 1 111111 12347889999999999887653
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-11 Score=108.67 Aligned_cols=135 Identities=19% Similarity=0.332 Sum_probs=89.8
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~- 123 (444)
++||+|||.|..+.+|+++ .|+++|.++..+... .+.|.+.+.++...+.|.....++ +.||+|+|.. +++|+.
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l-~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL~~ 109 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKL-QRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFLQR 109 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS-G
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccCCH
Confidence 8999999999999999997 578888888766543 357777888999999998887775 6899999865 466643
Q ss_pred -cHHHHHHHHHhhcCCCeEEEEEcC---CCCCCC--hhhHHHHHHHHHHHHhcCeEEEeeecceeEeec
Q 013393 124 -RDGILLLELDRLLRPGGYFVYSSP---EAYAHD--PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 186 (444)
Q Consensus 124 -d~~~~L~ei~rvLkPGG~lvis~p---~~~~~~--~~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k 186 (444)
....++..+...++|||++++.+. ..+... ....-.-.++..... +|+++........-+|
T Consensus 110 ~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 110 ELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDVGELHR 176 (192)
T ss_dssp GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEccccceee
Confidence 335799999999999999887431 111110 000001125555555 6988876544443333
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=109.59 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=86.7
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
..+|||+|||+|.++..+++. .++|+|+++.++..++.+.. ..+ .++.+.+.|...++ ++||+|++...+.+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 348999999999999999875 56777776655544443322 222 25778888877765 78999999885444
Q ss_pred cc-ccHHHHHHHHHhhcCCCeEEEEEcCCCCC-----------CChh----hHHHHHHHHHHHHhcCeEEEeeec
Q 013393 121 WL-QRDGILLLELDRLLRPGGYFVYSSPEAYA-----------HDPE----NRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 121 ~~-~d~~~~L~ei~rvLkPGG~lvis~p~~~~-----------~~~~----~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+. ++...++.++.+++++++++.++...... .... ....-.++.++++++||+++....
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 32 34568899999999988887764322110 0000 000124788889999998887653
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.7e-11 Score=108.12 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=71.0
Q ss_pred CCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
...+++||+|||.|.++..|+.+ +-.+...|+++..++.|+++ ..++.+.+.+.... .|+++||+||++. ++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE-Vl 116 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE-VL 116 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES--G
T ss_pred cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh-Hh
Confidence 55568999999999999999986 33444445556666777766 34678888886554 4678999999999 68
Q ss_pred ccccc---HHHHHHHHHhhcCCCeEEEEEcC
Q 013393 120 DWLQR---DGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 120 ~~~~d---~~~~L~ei~rvLkPGG~lvis~p 147 (444)
+|..+ ...++..+...|+|||.+++.+.
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 88765 34789999999999999999654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-11 Score=120.71 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=74.2
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
+|||+|||+|.++..++++ .++++|+++.++..+..+. ...+....+...|... ..+++||+|+|+. .+|..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~~~D~~~--~~~~~fDlIvsNP-PFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVFASNVFS--DIKGRFDMIISNP-PFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEEEccccc--ccCCCccEEEECC-CccCC
Confidence 7999999999999998874 5778888776665555333 3345556666556433 2357899999987 35542
Q ss_pred -----ccHHHHHHHHHhhcCCCeEEEEEcCCCCCC
Q 013393 123 -----QRDGILLLELDRLLRPGGYFVYSSPEAYAH 152 (444)
Q Consensus 123 -----~d~~~~L~ei~rvLkPGG~lvis~p~~~~~ 152 (444)
.....+++++.+.|||||.+++.......+
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y 309 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY 309 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCCh
Confidence 234689999999999999999987665443
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-10 Score=103.26 Aligned_cols=118 Identities=11% Similarity=0.001 Sum_probs=82.5
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+..+....++.+...+.. .++ .++||+|++... .
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~-~-- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS-G-- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC-c--
Confidence 38999999999999988763 67888888766655543332222234566665543 233 367999998763 2
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.....++.++.+.|+|||++++.... .....++.+++++.||+.+..
T Consensus 108 -~~~~~~l~~~~~~Lk~gG~lv~~~~~--------~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 108 -GNLTAIIDWSLAHLHPGGRLVLTFIL--------LENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred -cCHHHHHHHHHHhcCCCeEEEEEEec--------HhhHHHHHHHHHHCCCCcceE
Confidence 23567899999999999999985432 233567788999999975544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=114.12 Aligned_cols=143 Identities=23% Similarity=0.383 Sum_probs=95.0
Q ss_pred CCC--CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHH
Q 013393 11 PGG--GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 11 pg~--gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a 85 (444)
||. ||..|....-.++.+.+... ++ ++|||+|||||.++...++ +.|+++|++|..+..++ +.+
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~~-------~g---~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~ 204 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYVK-------PG---KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENA 204 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHSS-------TT---SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHH
T ss_pred CCCcccCCCCHHHHHHHHHHHHhcc-------CC---CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHH
Confidence 553 55555555666666665532 23 3899999999999888776 36899999998775555 445
Q ss_pred HHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHH
Q 013393 86 LERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 165 (444)
Q Consensus 86 ~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~ 165 (444)
..++....+.+.... ....+.||+|+++-. . .-...++..+.++|+|||++++|..-. ...+.+.+
T Consensus 205 ~~N~~~~~~~v~~~~--~~~~~~~dlvvANI~-~---~vL~~l~~~~~~~l~~~G~lIlSGIl~--------~~~~~v~~ 270 (295)
T PF06325_consen 205 ELNGVEDRIEVSLSE--DLVEGKFDLVVANIL-A---DVLLELAPDIASLLKPGGYLILSGILE--------EQEDEVIE 270 (295)
T ss_dssp HHTT-TTCEEESCTS--CTCCS-EEEEEEES--H---HHHHHHHHHCHHHEEEEEEEEEEEEEG--------GGHHHHHH
T ss_pred HHcCCCeeEEEEEec--ccccccCCEEEECCC-H---HHHHHHHHHHHHhhCCCCEEEEccccH--------HHHHHHHH
Confidence 556665555544222 233588999998862 2 233578888999999999999986432 33567777
Q ss_pred HHHhcCeEEEeeec
Q 013393 166 LLKSMCWKIVSKKD 179 (444)
Q Consensus 166 l~~~~gf~~v~~~~ 179 (444)
.+++ ||+++....
T Consensus 271 a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 271 AYKQ-GFELVEERE 283 (295)
T ss_dssp HHHT-TEEEEEEEE
T ss_pred HHHC-CCEEEEEEE
Confidence 7776 998876643
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=112.47 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=78.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCc--EEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~--~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|+++.++..++.+. ...+... .+...+ ..+..+++||+|+|+.. .
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~-~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~-~- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNA-ELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL-A- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCcceEEEecc--cccccCCCceEEEEecC-H-
Confidence 48999999999998887763 5788888887665555333 3333332 233332 23344678999999762 2
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.....++.++.++|||||+++++... ......+.+.+++. |+++..
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~--------~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGIL--------ETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCc--------HhHHHHHHHHHHcc-CceeeE
Confidence 23457899999999999999998643 12345667777665 766654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=108.31 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=68.4
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..+|||+|||+|.++..|++. .-....+.+.|+++.+++.|+++. .++.+.+.+...+++++++||+|+|+. ++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~-~l 139 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH-FL 139 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC-ee
Confidence 458999999999998888641 111123444455556666666552 345666666667777778999999999 58
Q ss_pred cccccH--HHHHHHHHhhcCCCeEEEEE
Q 013393 120 DWLQRD--GILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 120 ~~~~d~--~~~L~ei~rvLkPGG~lvis 145 (444)
||.++. ..+++++.|+++ |.+++.
T Consensus 140 hh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 887765 479999999998 455554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=107.98 Aligned_cols=133 Identities=17% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCC-CCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~ 120 (444)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+. ++.+...+...++.. +++||+|+++. .++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-VLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehh-HHH
Confidence 348999999999999888764 46667666655444432222 2233 467777777666644 37899999988 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC---------------hh---hHH---HHHHHHHHHHhcCeEEEeeec
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------------PE---NRR---IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~---------------~~---~~~---~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+..+...++.++.++|+|||.++++.+...... +. ... .-.++.+++++.||++++...
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 889999999999999999999998765321000 00 000 123678899999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.7e-10 Score=107.18 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=87.6
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC----CCCCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l----p~~~~sF 109 (444)
.++++. +|||+|||+|.++.++++. .|+++|+++.++.... +.++++ .++.+...|.... +++ ++|
T Consensus 69 ~i~~g~---~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 69 PIKKGS---KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred CCCCCC---EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccC
Confidence 344554 8999999999999999874 5888888887665443 344433 4567777776531 223 569
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC--CCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE--AYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~--~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
|+|++... .. .....++.++.++|||||+++++.+. ..... ...+.+.+..+.++++||+.+....
T Consensus 143 D~i~~d~~-~p--~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 143 DVIYQDVA-QP--NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-DPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred CEEEECCC-Ch--hHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-CHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 99986532 11 12245689999999999999996332 11111 1123445667899999999887654
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.5e-11 Score=125.60 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=75.0
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++ ..++|+|+++.++..++.+ +...+.+..+..+|...+| +++++||+|+++.+ +
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v-L 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI-L 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH-H
Confidence 3899999999999888875 3677777776655444322 2222456677778887777 78899999999874 5
Q ss_pred ccc-------------ccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 120 DWL-------------QRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 120 ~~~-------------~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
|+. .+...++++++++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 532 2456899999999999999999764
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=108.55 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=71.3
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc--
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-- 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~-- 123 (444)
.+|||+|||+|.++..|++.. -+.++.++|+++.+++.|+++..++.+...|... |+++++||+|+|+.+ ++|..
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~v-L~hl~p~ 121 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGV-LIHINPD 121 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECCh-hhhCCHH
Confidence 379999999999999887641 1234455566666777777765567777788776 888899999999884 65543
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEc
Q 013393 124 RDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+...+++++.|++ ++++++..
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEE
Confidence 3468999999998 46777754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.2e-10 Score=103.42 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=84.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
++|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+.++.+...|....+ .++||+|+++.. .+...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 37999999999999999875 47778777766554443332 33456677777765543 458999999863 32222
Q ss_pred c---------------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 124 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 124 d---------------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+ ...++.++.++|||||.+++..+... .-.++.+.+++.||+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCeEEEEE
Confidence 1 24689999999999999998754321 13466788888999766543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.7e-11 Score=107.63 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCC-cEE
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STL 94 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~-~~~ 94 (444)
+.+.-.+.+.+.+... ...+|||+|||+|.++..+++. .|+++|+++..+..+..+ +...+.. +.+
T Consensus 15 ~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~ 85 (170)
T PF05175_consen 15 RLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEV 85 (170)
T ss_dssp SHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEE
T ss_pred CCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCcccccc
Confidence 3444444555555421 2238999999999999999884 377777777655444433 3333444 667
Q ss_pred EEecCccCCCCCCCccEEEecccccccccc-----HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 95 GVLGTKRLPYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 95 ~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d-----~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...|... +.++++||+|+|+.- ++...+ ...++.++.+.|||||.+++....
T Consensus 86 ~~~d~~~-~~~~~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 86 VQSDLFE-ALPDGKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EESSTTT-TCCTTCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ccccccc-cccccceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 6666533 233689999999862 333222 358899999999999999775443
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-10 Score=95.05 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=68.8
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..++++ .++++|+++..+..+..........++.+...|... ++...++||.|++..+ .
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~- 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS-G- 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-c-
Confidence 38999999999999999874 577887777665554433332222356666666543 3333468999998763 2
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.....+++++.+.|||||+|+++.
T Consensus 99 --~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 --GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 234689999999999999999853
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=8e-10 Score=107.20 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=77.0
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+....+. ++..+.+||+|+|+.. .
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~------~~~~~~~fD~Vvani~-~--- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY------LPQGDLKADVIVANIL-A--- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE------EccCCCCcCEEEEcCc-H---
Confidence 48999999999998887763 3778877776655444332 2223321111 1212237999998752 2
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.....++.++.++|||||+++++.... .....+...+++.||+++...
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGILE--------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECcH--------hhHHHHHHHHHHCCCEEEEEE
Confidence 234578999999999999999975432 234577888899999877553
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8e-10 Score=105.62 Aligned_cols=131 Identities=15% Similarity=0.327 Sum_probs=89.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-CCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||+|.++..+++. .++++|+++..+..+.... ...+..+.+...+....+ ..+++||+|+|+. .+++.
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~-~l~~~ 127 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPGQFDVVTCME-MLEHV 127 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCCCccEEEEhh-Hhhcc
Confidence 47999999999999888875 4666666554443333222 122445666666666554 3457899999998 47777
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCCh------------------hhHH---HHHHHHHHHHhcCeEEEeee
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------------------ENRR---IWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~------------------~~~~---~~~~l~~l~~~~gf~~v~~~ 178 (444)
.+...+++++.++|+|||.++++.+....... .... .-.++.+++++.||+++...
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 128 PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 89999999999999999999998654211100 0000 11357889999999988664
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-10 Score=104.08 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=82.6
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-C-CCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-l-p~~~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|.++..+++. .++|+|+ ++.+++.+++++ +.+...|... + ++++++||+|+|+. .++|
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~giD~-----s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~~ 87 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGIEI-----DQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQA 87 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEEeC-----CHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhHc
Confidence 8999999999999888764 3455554 455556665544 4566677654 4 36778999999998 5888
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCC----------------C-------CC--hhhHHHHHHHHHHHHhcCeEEEe
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAY----------------A-------HD--PENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~----------------~-------~~--~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
..+...+++++.|+++++ +++.|... . .. ........++.+++++.||+++.
T Consensus 88 ~~d~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 88 TRNPEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CcCHHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 899999999999887653 33322210 0 00 01112345788899999998876
Q ss_pred eec
Q 013393 177 KKD 179 (444)
Q Consensus 177 ~~~ 179 (444)
...
T Consensus 165 ~~~ 167 (194)
T TIGR02081 165 RAA 167 (194)
T ss_pred EEE
Confidence 543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=109.45 Aligned_cols=132 Identities=21% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc-CCCcEEEE--ecCccCCCCCCCccEEEeccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGV--LGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~--~d~~~lp~~~~sFDlI~~~~~ 117 (444)
..++|||||||.|.++..++.+ .|+|+|-++ ....+.+++++. +....+.. ...+.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~--lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP--LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh--HHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 4569999999999999888874 467766554 344444444443 33333222 46788887 68999999988
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCCC----------CCChhh-----HHHHHHHHHHHHhcCeEEEeeec
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY----------AHDPEN-----RRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~----------~~~~~~-----~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++.|..++-..|.++...|+|||.+++.+.-.. .+...- ...-..+...++++||+.+..-+
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 688889999999999999999999997441110 000000 11224788899999998776644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=105.18 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=82.7
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+.... ...+. ++.+...|... ++++++||+|+|+.-...
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA-ARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 47999999999999999874 6778887776665444332 23343 46777777654 456788999998631110
Q ss_pred -----c--------------------cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 121 -----W--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 121 -----~--------------------~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
. ......++.++.++|+|||.+++.... ..-..+.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------DQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------cHHHHHHHHHHhCCCCce
Confidence 0 011236789999999999999985421 123467888888999765
Q ss_pred ee
Q 013393 176 SK 177 (444)
Q Consensus 176 ~~ 177 (444)
..
T Consensus 238 ~~ 239 (251)
T TIGR03534 238 ET 239 (251)
T ss_pred EE
Confidence 54
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-10 Score=105.48 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=67.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------CCCCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~~~sFDlI 112 (444)
.+|||+|||+|.++..+++. .|+++|+++.. ...++.+..+|+...+ +.+++||+|
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 38999999999999988773 58888887721 1235678888877643 567899999
Q ss_pred EeccccccccccH-----------HHHHHHHHhhcCCCeEEEEEcC
Q 013393 113 HCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 113 ~~~~~~l~~~~d~-----------~~~L~ei~rvLkPGG~lvis~p 147 (444)
+|+.+ .++..+. ..+|+++.++|||||.|++...
T Consensus 122 ~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 122 MSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99763 4443221 4689999999999999999643
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=105.96 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=87.6
Q ss_pred CCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEec-CccCCCCCCCccEEEecccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d-~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
...-|||||||+|.-+..|.+. ..+|+|+|+.|++.++ ++.....+..+| -+.+||++++||.+++.. ++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~-----~~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAV-----ERELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHH-----HhhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 5668999999999998888764 5678888877765554 332333455555 367999999999999876 577
Q ss_pred cccc-------H----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 121 WLQR-------D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 121 ~~~d-------~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
|.-+ + ..||..++.+|++|++.+++ +.++...+-+.+...+..+||.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q------fYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ------FYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEE------ecccchHHHHHHHHHHHhhccC
Confidence 7422 1 25788899999999999995 3344555667788888888985
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=108.16 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=68.8
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.++|||||||+|.++..++++ .++++|+ +..+..+. +.+.+.+. ++.+...|+...+++ .+|+|+++.+
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~- 224 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI- 224 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh-
Confidence 348999999999999999875 4666765 33332222 23333343 467778887666665 3799998884
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcC
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p 147 (444)
+|...+. ..+++++++.|||||++++.+.
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5543333 4799999999999999999764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=114.65 Aligned_cols=101 Identities=14% Similarity=0.200 Sum_probs=69.2
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..++++ .|+++|+++.++..++.+...... .++.+...|.... +++++||+|+|+..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP- 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP- 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC-
Confidence 37999999999999999874 578888877666555443322221 1345655554321 33468999999863
Q ss_pred cccc---c--cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWL---Q--RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~---~--d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+|.. . ...+++.++.++|+|||.|++....
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 4332 1 2247899999999999999997543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=101.18 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=79.6
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
+|||+|||+|.++..+++. .++++|+++..+..++. .+...+.++.+...|... .+++++||+|+|+.-......
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~ 116 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPP 116 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCc
Confidence 8999999999999988774 56788777765544432 223335556666667644 245678999999742111111
Q ss_pred --------------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 124 --------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 124 --------------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
....++.++.++|||||.+++...... ...++.+++++.||....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 117 DAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEV 181 (223)
T ss_pred ccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEE
Confidence 134678899999999999998654421 133566677778885443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-10 Score=105.49 Aligned_cols=169 Identities=18% Similarity=0.281 Sum_probs=113.2
Q ss_pred CCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC
Q 013393 12 GGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG 89 (444)
Q Consensus 12 g~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~ 89 (444)
|.|.+|--+.+++.+.+...-. ...++.+..++||||+|.|..+..++.. .|.+.++|+ .|+..-+++|
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~----~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~-----~Mr~rL~~kg 136 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGF----SWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASP-----PMRWRLSKKG 136 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhcc----CCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCH-----HHHHHHHhCC
Confidence 6788898888888776653311 1223335668999999999999999873 566665554 4555555566
Q ss_pred CCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-----------CCh----
Q 013393 90 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----------HDP---- 154 (444)
Q Consensus 90 ~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-----------~~~---- 154 (444)
.. +.+..++.-.+.+||+|.|.+ ++.-+.++..+|+++.+.|+|+|+++++.--++. +..
T Consensus 137 ~~----vl~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~ 211 (265)
T PF05219_consen 137 FT----VLDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLP 211 (265)
T ss_pred Ce----EEehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcC
Confidence 43 334334443456899999998 6888899999999999999999999985411110 000
Q ss_pred hhHHHH----HHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCcccCCCCcchhhhh
Q 013393 155 ENRRIW----NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNV 217 (444)
Q Consensus 155 ~~~~~~----~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~~~~~~~awy~ 217 (444)
.....| ..+.+.++.+||++.... ..|.+|+ .|...+.|+
T Consensus 212 ~~g~~~E~~v~~l~~v~~p~GF~v~~~t---------------------r~PYLcE--GD~~~~~Y~ 255 (265)
T PF05219_consen 212 VKGATFEEQVSSLVNVFEPAGFEVERWT---------------------RLPYLCE--GDLYQSYYV 255 (265)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEe---------------------ccCcccc--CcccCceEE
Confidence 001122 245578899999887652 4578888 455555554
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-10 Score=106.70 Aligned_cols=99 Identities=15% Similarity=0.023 Sum_probs=70.7
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHH------------HHcCCCcEEEEecCccCCCC-CCCccE
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFA------------LERGIPSTLGVLGTKRLPYP-SRSFEL 111 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a------------~e~~~~~~~~~~d~~~lp~~-~~sFDl 111 (444)
+|||+|||.|..+.+|+++ .|+|+|+|+..+..++.+.. ..++.++.+.++|...++.. .+.||.
T Consensus 37 rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~ 116 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDA 116 (213)
T ss_pred eEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCE
Confidence 8999999999999999986 67888887766653321110 00234577788888777642 457999
Q ss_pred EEeccccccccccH-HHHHHHHHhhcCCCeEEEEE
Q 013393 112 AHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 112 I~~~~~~l~~~~d~-~~~L~ei~rvLkPGG~lvis 145 (444)
|+-..+.+|..++. ..+++.+.++|||||++++.
T Consensus 117 i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 117 VYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99877544443332 47999999999999986654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.8e-10 Score=111.98 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=86.4
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccc-----cc
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC-----RI 119 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~-----~l 119 (444)
+|||+|||+|.++..++. ..++|+|+++.++..+..+.......++.+...|+.++|+++++||+|+++.- ..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~ 264 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTA 264 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccc
Confidence 899999999998776654 46888888887766555443322223357788899899988889999999621 01
Q ss_pred cc--c-ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 120 DW--L-QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 120 ~~--~-~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.. . .-...++.++.++|||||++++..|.. ..+.++++..|| ++....
T Consensus 265 ~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-----------~~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 265 AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-----------IDLESLAEDAFR-VVKRFE 315 (329)
T ss_pred cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-----------CCHHHHHhhcCc-chheee
Confidence 10 1 114689999999999999999877652 134567888999 665543
|
This family is found exclusively in the Archaea. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-09 Score=100.14 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=81.4
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCcc-CCCCCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LPYPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~-lp~~~~sFDlI~~~~~~ 118 (444)
+|||+|||+|.++..++. ..++++|+++.++..++.+ ++..+ .++.+...|..+ ++..+++||.|++...
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~- 120 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG- 120 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC-
Confidence 899999999999988764 2578888888766544433 33334 356676777654 3333468999997541
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
..+...++.++.++|||||++++.... .....++...+++.||+.
T Consensus 121 ---~~~~~~~l~~~~~~LkpgG~lv~~~~~--------~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 121 ---SEKLKEIISASWEIIKKGGRIVIDAIL--------LETVNNALSALENIGFNL 165 (198)
T ss_pred ---cccHHHHHHHHHHHcCCCcEEEEEeec--------HHHHHHHHHHHHHcCCCe
Confidence 256678999999999999999985432 123467777888889843
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=97.03 Aligned_cols=122 Identities=15% Similarity=0.193 Sum_probs=81.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCC---cEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~---~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++|||+|||+|.++..+++. .++++|+++..+..++.+. ...+.. +.+...|... ++++++||+|+++....+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCcCC
Confidence 38999999999999998864 6777777765554443322 222322 6666666544 344568999998753221
Q ss_pred c--------------------cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 121 W--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~--------------------~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. ......+++++.++|||||.+++..+... .-..+.+++++.||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--------GEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--------CHHHHHHHHHHCCCeeeee
Confidence 0 01134689999999999999988765422 1245778899999976644
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-09 Score=103.63 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=86.8
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc---CCCCCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---lp~~~~sF 109 (444)
.++++. +|||+|||+|.++.++++. .|+++|+++.+. +.+++.+.++ .++.+...|... ...+.++|
T Consensus 129 ~IkpG~---~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 129 PIKPGS---KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ccCCCC---EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCC
Confidence 345554 8999999999999999874 489999886433 2344555544 567777777643 22234589
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-CChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
|+|++... + ..+...++.++.++|||||+|++....... ..+.....+.+-.+.+++.||+.+....
T Consensus 204 DvV~~Dva--~-pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 204 DVIFADVA--Q-PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred CEEEEeCC--C-cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 99998763 2 233446777999999999999985322111 1111122233323778889998776543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=101.20 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=66.0
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|..+..+++ ..|+++|+++..+..+..+. ...+. ++.+...|........++||+|++...
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA- 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccCCccCCCccEEEEccC-
Confidence 3899999999999988875 35788888776654444333 23333 367777787654444578999998874
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.++. ..++.+.|+|||++++..
T Consensus 152 ~~~~------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTI------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cchh------hHHHHHhcCcCcEEEEEE
Confidence 4432 257889999999999853
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-10 Score=105.90 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=79.2
Q ss_pred CeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCCcE----EEEec--CccCCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPST----LGVLG--TKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~~~----~~~~d--~~~lp~~~~sFDlI~~~~~ 117 (444)
+.++|||||+|..++-+++ .+|+|+|+ +++|++.|.+...... ....+ ...|.-.++|.|+|+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~-----s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDV-----SEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecC-----CHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3799999999977777776 37777755 5667777776533221 11222 2333334899999999996
Q ss_pred cccccccHHHHHHHHHhhcCCCe-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 118 RIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG-~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+|| -|.+++++++.|+||+.| .+.+ |.+.+ ..-.|+++..++.+.+++
T Consensus 110 -~HW-Fdle~fy~~~~rvLRk~Gg~iav-----W~Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 110 -VHW-FDLERFYKEAYRVLRKDGGLIAV-----WNYND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred -HHh-hchHHHHHHHHHHcCCCCCEEEE-----EEccC-CCcCCHHHHHHHHHHhhc
Confidence 999 588999999999999877 5554 22222 234577888888877765
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=106.55 Aligned_cols=128 Identities=19% Similarity=0.265 Sum_probs=77.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..++.+..... ..++.+...|...+ +++||+|+|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEE
Confidence 48999999999999999885 46777777666655443322210 12456666665443 5789999999864
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCCh------------hhHH----HHHHHHHHHHhcCeEEEeee
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP------------ENRR----IWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~~------------~~~~----~~~~l~~l~~~~gf~~v~~~ 178 (444)
+|+ ++. ..+++.+.+ +.+||.++...+....+.. .... .-+++.+++++.||++...+
T Consensus 223 ~H~-p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 223 IHY-PQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred Eec-CHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 444 443 345666665 4566665543333211100 0000 12478888888898876543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=111.18 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=79.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC--CCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l--p~~~~sFDlI~~~~~~l 119 (444)
..+||||||+|.++..++.+ .++|+|+++.++..+..+..+..-.++.+...|+..+ .+++++||.|+++. ..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-Pd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-PV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-CC
Confidence 37999999999999999874 7899999988776666544433334678888887654 47789999999876 36
Q ss_pred cccccH------HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 120 DWLQRD------GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 120 ~~~~d~------~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+|.... ..++.++.|+|+|||.+.+.+..
T Consensus 203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 203 PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 664332 47999999999999999996543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-09 Score=99.19 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=78.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||+|.++..+++. .++++|+++.++..++........ .++.+...| ++..+++||+|+|... ++|.
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~-l~~~ 140 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV-LIHY 140 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch-hhcC
Confidence 48999999999999999875 466777666555444433322111 246666666 3444678999999885 5443
Q ss_pred c--cHHHHHHHHHhhcCCCeEEEEEcCCCC-----------CCChhh----HHHHHHHHHHHHhcCeEEEeeec
Q 013393 123 Q--RDGILLLELDRLLRPGGYFVYSSPEAY-----------AHDPEN----RRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 123 ~--d~~~~L~ei~rvLkPGG~lvis~p~~~-----------~~~~~~----~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+ +...+++++.+.+++++.+.+...... ...... ...-.++.+++++.||++.....
T Consensus 141 ~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 141 PQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 3 345788899888765555444221100 000000 00123677788888888776644
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=98.95 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=59.3
Q ss_pred EEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 69 AMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 69 gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
|+|+|+.++..+..+..... ..++.+.+.|...+|+++++||+|+++. .+++.+|...++++++|+|||||.+++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 56666555544332221111 2357899999999999999999999988 5888899999999999999999999986
Q ss_pred cC
Q 013393 146 SP 147 (444)
Q Consensus 146 ~p 147 (444)
+.
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 53
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=100.22 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=66.0
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++. .|+++|+++..+..+..+.......++.+...|......+.++||+|++... .+
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~-~~ 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA-GP 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC-cc
Confidence 38999999999999887752 6788888776555444333222223578888887665555678999998763 33
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
. ....+.+.|||||++++.
T Consensus 157 ~------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 157 D------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred c------chHHHHHhhCCCcEEEEE
Confidence 2 234677789999999984
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=105.16 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=90.1
Q ss_pred cccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 16 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 16 ~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
..+.+.+.=.+.+.+.++.. .++ +|||+|||.|.++..+++. .++-+|++...+.-++.+.+.....+
T Consensus 138 FS~~~lD~GS~lLl~~l~~~-----~~~---~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~ 209 (300)
T COG2813 138 FSRDKLDKGSRLLLETLPPD-----LGG---KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN 209 (300)
T ss_pred CcCCCcChHHHHHHHhCCcc-----CCC---cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc
Confidence 33444455566667776642 122 7999999999999999984 45556666555544443333332233
Q ss_pred cEEEEecCccCCCCCCCccEEEecccccccccc-H----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHH
Q 013393 92 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 166 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d-~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l 166 (444)
..+...+ ...+..+ +||+|+|+- -+|--.+ . .+++.+..+.|++||.|.+.......+.+.-.+.|..++.+
T Consensus 210 ~~v~~s~-~~~~v~~-kfd~IisNP-Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 210 TEVWASN-LYEPVEG-KFDLIISNP-PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVL 286 (300)
T ss_pred cEEEEec-ccccccc-cccEEEeCC-CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEE
Confidence 2333333 2333333 899999986 3443111 1 37999999999999999998765444433333344444555
Q ss_pred HHhcCeEEEe
Q 013393 167 LKSMCWKIVS 176 (444)
Q Consensus 167 ~~~~gf~~v~ 176 (444)
++..||++..
T Consensus 287 a~~~gf~Vl~ 296 (300)
T COG2813 287 AKNGGFKVLR 296 (300)
T ss_pred EeCCCEEEEE
Confidence 5555555543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=101.99 Aligned_cols=124 Identities=20% Similarity=0.252 Sum_probs=86.3
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCC--CCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~ 117 (444)
.++|||+|||+|..+..++++ .++++++.+.+...++.+.+... ..++.+...|...+. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 458999999999999999885 56677666655544444443322 335677888877654 33457999999731
Q ss_pred cc---------------cc--cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 118 RI---------------DW--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 ~l---------------~~--~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.. +| .-+.+.+++.+.++|||||++.+..++ ....++.+++++.+|.....
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhcCCCceEE
Confidence 00 00 123457899999999999999997654 33557788899888866544
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-09 Score=100.82 Aligned_cols=98 Identities=15% Similarity=0.049 Sum_probs=67.5
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHH------------HcCCCcEEEEecCccCCCC-CCCccE
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFEL 111 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~------------e~~~~~~~~~~d~~~lp~~-~~sFDl 111 (444)
+|||+|||.|..+.+|+++ .|+|+|+++..+..++.+... ....++.+.+.|+..++.. ...||+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~ 119 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDA 119 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeE
Confidence 8999999999999999986 677777777655443211100 0123466778887776532 358999
Q ss_pred EEeccccccccc-cHHHHHHHHHhhcCCCeEEEE
Q 013393 112 AHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 112 I~~~~~~l~~~~-d~~~~L~ei~rvLkPGG~lvi 144 (444)
|+-+.+..+..+ ....++..+.++|+|||++++
T Consensus 120 v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 120 VYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 998775333322 235899999999999996444
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-09 Score=106.22 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=82.6
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC-CCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|.++..++. ..++++|+++.++..++.+ ++..+.++.+...|.....++ .++||+|+|+.-.+..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~ 332 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIEN 332 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCc
Confidence 799999999999988875 3578888887766555533 334456778888886543332 4579999997421110
Q ss_pred c--------------------cc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 L--------------------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~--------------------~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. ++ ...++.++.+.|+|||++++.... .+-..+.+++++.||..+..
T Consensus 333 ~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 333 GDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred chhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------cHHHHHHHHHHHCCCcEEEE
Confidence 0 01 235677778899999999884322 23457888899899976544
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=96.54 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=66.1
Q ss_pred CeEEEECCCcchHHHHHhhC--C---ceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--D---IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~---V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. . |+++|+++..+..+..+. .+.+ .++.+...|........++||+|++..+ .
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~-~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~-~ 156 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL-RKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA-G 156 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-c
Confidence 38999999999999988863 2 888888876655444333 3333 3577777786654434568999998763 3
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.. +...+.+.|+|||++++..
T Consensus 157 ~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 157 PK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cc------ccHHHHHhcCcCcEEEEEE
Confidence 32 3456788999999999853
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.5e-09 Score=83.85 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=68.7
Q ss_pred eEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC-CCCCccEEEeccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW- 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~-~~~sFDlI~~~~~~l~~- 121 (444)
+|||+|||+|.++..+++ ..++++|+++..+..+..........+..+...|...... ..++||+|+++.+ +++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-eeeh
Confidence 489999999999988887 2566666655433222211111123356666777666543 4578999999984 665
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEE
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
......+++.+.+.|+|||+++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677789999999999999999985
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=102.46 Aligned_cols=102 Identities=10% Similarity=0.140 Sum_probs=72.7
Q ss_pred CCCeEEEECCCcchHHHH-Hhh-----CCceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEec
Q 013393 44 NIRNVLDVGCGVASFGAY-LLS-----HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~-La~-----~~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
.+++|||||||.|.++.. ++. ..++|+|+++..+..++....... ...+.|...|..+.+...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 456899999998744333 332 247788877766655553332222 235889888876654334789999999
Q ss_pred ccccccc-ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 116 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 116 ~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+++++. ++..++++++.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 556663 788899999999999999999965
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-09 Score=91.25 Aligned_cols=101 Identities=25% Similarity=0.374 Sum_probs=69.0
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCC--CCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~l~ 120 (444)
+|||+|||+|.++..+++. .++++|+++..+..+..++.... ..++.+...|....+ +++++||+|+++.-...
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~ 82 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGP 82 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTS
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCcc
Confidence 7999999999999888763 56777776654433332222211 235788888877664 67899999999753222
Q ss_pred cc-------ccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 121 WL-------QRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 121 ~~-------~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
.. .....+++++.++|||||.+++..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 83 RSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp BTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 11 1235889999999999999998654
|
... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.4e-08 Score=90.26 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=67.2
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++ ..++++|+++..+..++.+..+....++.+...|... ++.....+|.++...
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~---- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG---- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC----
Confidence 3899999999999988874 3688888888766555533332222356777666543 222223467765422
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+...+++++.++|+|||++++..+.
T Consensus 118 -~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 -GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred -CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 245678999999999999999997654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=101.03 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=66.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCcc-CCCCCCC---ccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~-lp~~~~s---FDlI~~~ 115 (444)
.+|||+|||+|..+..|+++ .++++|+|+.++..++.+..... +.++....+|+.+ ++++... .+++++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 37999999999999888764 46777777666655554433322 3445566788665 4444322 2333332
Q ss_pred cccccccc--cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...+++.+ +...+|++++++|+|||.|++....
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 22355433 3347999999999999999986543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=98.23 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=79.6
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID- 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~- 120 (444)
.+|||+|||+|.++..++.. .++++|+++..+..++.+.......++.+...|... ++++++||+|+|+.-.+.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPE 188 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCc
Confidence 47999999999999988763 577787776655444433321123456777777533 233578999998631110
Q ss_pred ------------c------------cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 121 ------------W------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 121 ------------~------------~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
+ ......++.++.++|+|||++++.... ..-..+.+++++.||..+.
T Consensus 189 ~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------~~~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 189 ADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------DQGEAVRALLAAAGFADVE 259 (275)
T ss_pred chhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------hHHHHHHHHHHhCCCceeE
Confidence 0 012346888899999999999984321 1234577788888986444
Q ss_pred e
Q 013393 177 K 177 (444)
Q Consensus 177 ~ 177 (444)
.
T Consensus 260 ~ 260 (275)
T PRK09328 260 T 260 (275)
T ss_pred E
Confidence 3
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.4e-09 Score=95.79 Aligned_cols=111 Identities=18% Similarity=0.277 Sum_probs=73.4
Q ss_pred CeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
-.|.|+|||.+.++..+.+. .|.-.|+.+. +-.+..+|+...|.++++.|++++..+ +.. .|
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLS-LMG-Tn 136 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLS-LMG-TN 136 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES----S-S-
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhh-hhC-CC
Confidence 37999999999999877643 5777777653 224678999999999999999999875 433 78
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 125 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+..++.|+.|+|||||.|.|.+... +. ..-+.+.+.+++.||++.....
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~S--Rf----~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKS--RF----ENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGG--G-----S-HHHHHHHHHCTTEEEEEEE-
T ss_pred cHHHHHHHHheeccCcEEEEEEecc--cC----cCHHHHHHHHHHCCCeEEeccc
Confidence 9999999999999999999965331 11 1235778889999999887654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=90.59 Aligned_cols=123 Identities=21% Similarity=0.292 Sum_probs=84.2
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHH----HcCCC--cEEEEecCccCCCCCCCccEEEeccc-
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL----ERGIP--STLGVLGTKRLPYPSRSFELAHCSRC- 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~----e~~~~--~~~~~~d~~~lp~~~~sFDlI~~~~~- 117 (444)
..+|||+|||.|.+...|++.+..+ ++.++|.++.++..|+ ..+.+ ++|.+.|+..-.+.++.||+|+=-..
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 3379999999999999999864322 2455555555555543 33444 78999998776677788999885321
Q ss_pred -ccccccc-----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 118 -RIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 -~l~~~~d-----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
++...++ ...++..+.+.|+|||.|+|+.-++ ..+++.+..+..+|+....
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~---------T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF---------TKDELVEEFENFNFEYLST 203 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc---------cHHHHHHHHhcCCeEEEEe
Confidence 1111111 2367889999999999999975543 2467888888888876544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=93.79 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=63.5
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------CCCCCccEEE
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAH 113 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~~~sFDlI~ 113 (444)
+|||+|||+|.++..+++. .++++|+++.. ...++.+...|..+.+ +++++||+|+
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 8999999999998887653 48889888742 1234566666765432 4567899999
Q ss_pred ecccc---cccc-------ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRCR---IDWL-------QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~~---l~~~-------~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|..+. ..|. .+...++.++.++|+|||++++..
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 86421 1111 123578999999999999999964
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.2e-08 Score=97.03 Aligned_cols=120 Identities=15% Similarity=0.173 Sum_probs=80.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~- 118 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+ ++..+. ++.+...|... ++++++||+|+|+--.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 47999999999999999863 578888877666555433 333343 46777777533 2345689999996200
Q ss_pred -----------cccc------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 119 -----------IDWL------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 119 -----------l~~~------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
+++. .....++.++.++|+|||++++.... .+..+.+++.+.+|.-.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----------~~~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----------SMEALEEAYPDVPFTWL 270 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----------CHHHHHHHHHhCCCcee
Confidence 0110 11246789999999999999985432 12467778887776554
Q ss_pred ee
Q 013393 176 SK 177 (444)
Q Consensus 176 ~~ 177 (444)
..
T Consensus 271 ~~ 272 (284)
T TIGR03533 271 EF 272 (284)
T ss_pred ee
Confidence 43
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-08 Score=97.24 Aligned_cols=121 Identities=15% Similarity=0.263 Sum_probs=79.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccc--
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~-- 117 (444)
.+|||+|||+|.++..++.. .++++|+++..+..+..+ ++..+. ++.+...|... ++++++||+|+|+.-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 47999999999999988863 578888777655444433 333343 26777777543 344458999999621
Q ss_pred ----------cccccc------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHH-hcCeEE
Q 013393 118 ----------RIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 174 (444)
Q Consensus 118 ----------~l~~~~------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~-~~gf~~ 174 (444)
...|.+ ....++.++.+.|+|||++++.... .+-..+.+++. ..+|..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~---------~q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN---------WQQKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc---------cHHHHHHHHHHhcCCCce
Confidence 111111 2347889999999999999985433 12335666666 467755
Q ss_pred Eee
Q 013393 175 VSK 177 (444)
Q Consensus 175 v~~ 177 (444)
+..
T Consensus 265 ~~~ 267 (284)
T TIGR00536 265 VEN 267 (284)
T ss_pred eEE
Confidence 443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=92.80 Aligned_cols=156 Identities=21% Similarity=0.307 Sum_probs=93.3
Q ss_pred ccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHH---H-HHHHcCCC-
Q 013393 17 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI---Q-FALERGIP- 91 (444)
Q Consensus 17 f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i---~-~a~e~~~~- 91 (444)
|...+++..+-|.+.|... ++..+. +|||||||||..+.+++++- -.+..-|.|..+... + ...+.+.+
T Consensus 3 ~spAaeRNk~pIl~vL~~~---l~~~~~--~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~N 76 (204)
T PF06080_consen 3 FSPAAERNKDPILEVLKQY---LPDSGT--RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPN 76 (204)
T ss_pred CChhhhhCHhHHHHHHHHH---hCccCc--eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcc
Confidence 3444555555555555432 222231 59999999999999998852 123445555544332 1 22222221
Q ss_pred c-EEEEecCcc--CCC------CCCCccEEEeccccccccc--cHHHHHHHHHhhcCCCeEEEEEcCCCCC--CCh----
Q 013393 92 S-TLGVLGTKR--LPY------PSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA--HDP---- 154 (444)
Q Consensus 92 ~-~~~~~d~~~--lp~------~~~sFDlI~~~~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~~~~--~~~---- 154 (444)
+ .-...|+.. .+. ..++||+|+|.+ ++|..+ .-+.+|+.+.++|+|||.|++-.|..+. .+.
T Consensus 77 v~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~ 155 (204)
T PF06080_consen 77 VRPPLALDVSAPPWPWELPAPLSPESFDAIFCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNA 155 (204)
T ss_pred cCCCeEeecCCCCCccccccccCCCCcceeeehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHH
Confidence 1 111334332 232 246899999999 577643 2248999999999999999998776431 111
Q ss_pred ------------hhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 155 ------------ENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 155 ------------~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.+.+..+.+.+++++.|++......
T Consensus 156 ~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~ 192 (204)
T PF06080_consen 156 AFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDID 192 (204)
T ss_pred HHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccc
Confidence 1223345888999999998766543
|
The function of this family is unknown. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-08 Score=95.27 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=71.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH-----cCCCcEEEEecCcc-CCCCCCCccEEE
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKR-LPYPSRSFELAH 113 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e-----~~~~~~~~~~d~~~-lp~~~~sFDlI~ 113 (444)
++++||+||||+|..+..+++. .|+++|+++..+..+...+... ...++.+...|... +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4568999999999999999875 4677777665554443322211 13456777788654 233467899999
Q ss_pred ecccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 114 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 114 ~~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+..+ -++.+. ...+++++.+.|+|||.+++....++
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 156 VDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred ECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 8642 333222 25789999999999999998765543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-08 Score=91.71 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=63.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..++.+..-.++.+...|......+.++||+|++..+ .++
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~~~-- 156 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-APE-- 156 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-chh--
Confidence 38999999999988877663 5777777765554444333322222467777775432223478999998763 333
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
+..++.+.|+|||.+++...
T Consensus 157 ----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 ----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ----hhHHHHHhcCCCcEEEEEEc
Confidence 34567899999999998643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=103.35 Aligned_cols=104 Identities=22% Similarity=0.393 Sum_probs=72.3
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEecc-cc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSR-CR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~~-~~ 118 (444)
.+|||+|||+|..+.++++. .|+++|+++..+..++ +.+...+.++.+...|...++ ++.++||.|++.. |.
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 38999999999999888763 5778877776665544 233444666777788876654 3457899999532 11
Q ss_pred ----c------ccccc----------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 119 ----I------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 119 ----l------~~~~d----------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+ .|... ...++.++.++|||||++++++-...
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 1 11111 23689999999999999999876544
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-08 Score=94.24 Aligned_cols=112 Identities=16% Similarity=0.263 Sum_probs=84.6
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
...|.|+|||.+.++.- ....|+.+|+.+. +-.+..+|+.+.|.++++.|++++..+ +. ..|
T Consensus 181 ~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS-LM-gtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS-LM-GTN 242 (325)
T ss_pred ceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh-hh-ccc
Confidence 34799999999988751 1237888887653 345678999999999999999998664 33 478
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeecc
Q 013393 125 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
...++.|++|+|+|||.+.|..... +..+ -..+.+.+..+||.+......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~S--Rf~d----v~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKS--RFSD----VKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhh--hccc----HHHHHHHHHHcCCeeeehhhh
Confidence 9999999999999999999965331 1111 234778889999988776554
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=90.13 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=77.8
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCC-CCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPY-PSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~-~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+. ...+ ..+...|..+ ++. ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 37999999999999988753 5778887776655444332 2223 4666677543 221 135799999874111
Q ss_pred c-------------cc--------cc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 120 D-------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 120 ~-------------~~--------~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
. +- .+ ...++..+.++|||||++++.... .....+..++++.||+.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---------~~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---------RQAPLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------chHHHHHHHHHHCCCCc
Confidence 1 00 01 236777888999999999986432 22346788888888865
Q ss_pred Eee
Q 013393 175 VSK 177 (444)
Q Consensus 175 v~~ 177 (444)
...
T Consensus 236 ~~~ 238 (251)
T TIGR03704 236 RVA 238 (251)
T ss_pred eee
Confidence 443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-07 Score=84.24 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=83.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCCCCCCccEE
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELA 112 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~~~~sFDlI 112 (444)
.+.+++ +++|||||||+.+..++. .+++++|-++..+.....+.++-...++.+...++.+ ++-.+ +||.|
T Consensus 31 ~~~~g~---~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~dai 106 (187)
T COG2242 31 RPRPGD---RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAI 106 (187)
T ss_pred CCCCCC---EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEE
Confidence 334454 899999999999999883 3688887776555444433333334566777776544 33222 79999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCe-EEE
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW-KIV 175 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf-~~v 175 (444)
+.... .+.+.+|+.+...|||||++++.... .+......+.+++.|+ +++
T Consensus 107 FIGGg-----~~i~~ile~~~~~l~~ggrlV~nait--------lE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 107 FIGGG-----GNIEEILEAAWERLKPGGRLVANAIT--------LETLAKALEALEQLGGREIV 157 (187)
T ss_pred EECCC-----CCHHHHHHHHHHHcCcCCeEEEEeec--------HHHHHHHHHHHHHcCCceEE
Confidence 97663 56778999999999999999985433 2334456677888888 443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-08 Score=103.40 Aligned_cols=295 Identities=11% Similarity=0.121 Sum_probs=156.6
Q ss_pred CCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
..+|||+|||+|.++..++. ..++++|+++..+..+..+ +...+. .+.+...|... ++++++||+|+|+.-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N-~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSN-AIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHH-HHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 34899999999999988875 3688888887666555433 233333 45666666432 2345689999996311
Q ss_pred cc-------------cc------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 119 ID-------------WL------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 119 l~-------------~~------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+. |- .....++.++.++|+|||.+++... ...-..+.+++++.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---------~~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---------FKQEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---------CchHHHHHHHHHhcCCC
Confidence 11 10 0123577888999999999998422 12345678888888886
Q ss_pred EEeeecceeEeeccCchhhHhhcCCCCCCCcccCCCCcchhhhhcccccccccccccccccCccccCCCCCCCCCCCCcc
Q 013393 174 IVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLE 253 (444)
Q Consensus 174 ~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p~~~~~~~~~~~~~wP~rL~~~p~~~~ 253 (444)
.+....+.. .. +.... -...++.+. -....|+ +|+
T Consensus 288 ~~~~~~D~~------g~-----------~R~v~-----------~~~~~~~rs---~~rr~g~-------~~~------- 322 (506)
T PRK01544 288 IESVYKDLQ------GH-----------SRVIL-----------ISPINLNRS---YARRIGK-------SLS------- 322 (506)
T ss_pred ceEEEecCC------CC-----------ceEEE-----------eccccCCcc---eeccCCC-------CCC-------
Confidence 543321100 00 00000 000001000 0000010 010
Q ss_pred ccCCChhHHHhhHhhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccCC-----CchhH
Q 013393 254 EVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKI 327 (444)
Q Consensus 254 ~~g~~~~~f~~~~~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-----~~l~~ 327 (444)
..--..-..+|.. |.....+ +....-..++|+.+|.|+|.+.+... |- .|++=++-. ..+.-
T Consensus 323 -----~~q~~~~e~~~p~----~~i~~ek-lf~~~~p~~lEIG~G~G~~~~~~A~~~p~--~~~iGiE~~~~~~~~~~~~ 390 (506)
T PRK01544 323 -----GVQQNLLDNELPK----YLFSKEK-LVNEKRKVFLEIGFGMGEHFINQAKMNPD--ALFIGVEVYLNGVANVLKL 390 (506)
T ss_pred -----HHHHHHHHhhhhh----hCCCHHH-hCCCCCceEEEECCCchHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHH
Confidence 0000000001111 1000011 23345688999999999999999643 32 144444432 33445
Q ss_pred HhhccccccccccccCC----CCC-Ccccchhhcccccccc------ccCCCChhhhhhhhcccccCCcEEEEe-ccHHH
Q 013393 328 IYDRGLIGTVHDWCESF----STY-PRTYDLLHAWKVFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSI 395 (444)
Q Consensus 328 ~~~rg~~~~~~~~~~~~----~~y-~~~~dl~h~~~~~~~~------~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~ 395 (444)
+.++||=.+. =.|..+ .-+ +.+.|-+|- .|.+- .++|=--...|-++-|+|+|||.+-++ |..+.
T Consensus 391 ~~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i--~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 391 AGEQNITNFL-LFPNNLDLILNDLPNNSLDGIYI--LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred HHHcCCCeEE-EEcCCHHHHHHhcCcccccEEEE--ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 6677763221 122222 122 356666653 34422 245666678889999999999999775 66666
Q ss_pred HHHHHHHHhh-cccee
Q 013393 396 INYIRKFITA-LKWDG 410 (444)
Q Consensus 396 ~~~~~~~~~~-~~w~~ 410 (444)
.+.+...+.. -.|+.
T Consensus 468 ~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 468 FYEAIELIQQNGNFEI 483 (506)
T ss_pred HHHHHHHHHhCCCeEe
Confidence 6665555443 23443
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=94.65 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=77.5
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..++.. .++++|+++..+..++.+ ++..+. ++.+...|... ++++++||+|+|+.-.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 47999999999999998863 578888877666555533 333343 46777777543 23456899999972111
Q ss_pred ------------cccc------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 120 ------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 120 ------------~~~~------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
++.+ ....+++++.+.|+|||++++..... ...+.+++.+.+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCEEE
Confidence 1111 12477899999999999999853321 2346666776665433
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=99.71 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=80.5
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC----CCCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp----~~~~sFDlI~~~ 115 (444)
.+|||+|||+|..+.++++. .|+++|+++..+...+.+ ++..+. ++.+...|...++ +..++||.|++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 38999999999999888763 577887777665544433 333344 5677778877665 446789999962
Q ss_pred ----c-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CeE
Q 013393 116 ----R-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWK 173 (444)
Q Consensus 116 ----~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~-gf~ 173 (444)
. ..+...++ ...+|.++.++|||||++++++-..+... . -..+..++++. +|+
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E--n---e~~v~~~l~~~~~~~ 407 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE--N---EAQIEQFLARHPDWK 407 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh--H---HHHHHHHHHhCCCcE
Confidence 1 12222222 34789999999999999999875543221 1 23455555554 454
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-08 Score=95.16 Aligned_cols=128 Identities=17% Similarity=0.264 Sum_probs=94.0
Q ss_pred eEEEECCCcchHHHHHhhCC---ceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~---V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.++|||||.|....++...+ ++-+|.| ..|++.++.. +......+.|-+.++|.+++||+|+++. .+|
T Consensus 75 ~a~diGcs~G~v~rhl~~e~vekli~~DtS-----~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slH 148 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGVEKLIMMDTS-----YDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLH 148 (325)
T ss_pred ceeecccchhhhhHHHHhcchhheeeeecc-----hHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhh
Confidence 79999999999999998864 3445554 4455555443 4445667888899999999999999998 599
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCC------------------CCh--hhHHHHHHHHHHHHhcCeEEEeeecc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------------HDP--ENRRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~------------------~~~--~~~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
|..|.+.-+.++...|||+|.|+-+.-.... ..+ .....-+.+..++.++||.......+
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 9999999999999999999999854211100 000 00112346788999999998766543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-08 Score=90.77 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
....++||.|||.|..+..++-...-.+|+. +..+..++.|++. ..-..+...+.+++..++++||+|+|--|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3456899999999999998876544445554 3445555666643 22245667777777655679999999997
Q ss_pred cccccccHH--HHHHHHHhhcCCCeEEEEEcCC---CC-CCChhh---HHHHHHHHHHHHhcCeEEEeeecc
Q 013393 118 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSPE---AY-AHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 118 ~l~~~~d~~--~~L~ei~rvLkPGG~lvis~p~---~~-~~~~~~---~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
+.| +.|.+ .+|+++...|+|||.+++-+.- .. ..++++ .+.-..+.++++++|++++..+.+
T Consensus 132 lgh-LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGH-LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGG-S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hcc-CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 555 45544 8999999999999999984321 11 111111 234568899999999999987654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.2e-08 Score=95.33 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=69.6
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEec----c
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCS----R 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~----~ 116 (444)
+|||+|||+|..+..+++. .|+++|+++..+.....+.. ..+. ++.+...|...++...++||.|++. .
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~-~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN-RCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH-HcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 8999999999999888762 57788777766644443333 3343 5667777776665555679999962 1
Q ss_pred -ccccccc----------------cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 117 -CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 117 -~~l~~~~----------------d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.++...+ ....+|.++.+.|||||++++++-..
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 0111111 12368999999999999999987554
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=99.95 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=71.1
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEe----c
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC----S 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~----~ 115 (444)
.+|||+|||+|..+.++++ ..|+++|+++..+..++. .++..+. ++.+...|...++ ++++||+|++ +
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 3899999999998887765 257888888776655443 3333454 4677777876665 4578999995 2
Q ss_pred cc-cc------cccc----------cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 RC-RI------DWLQ----------RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 ~~-~l------~~~~----------d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
.. .+ .|.. ....+|.++.+.|||||++++++-...
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 21 11 0111 123689999999999999999876643
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-08 Score=99.81 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=69.6
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEE--EEecCccCCC--CCCCccEEEe---
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC--- 114 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~--~~~d~~~lp~--~~~sFDlI~~--- 114 (444)
.+|||+|||+|..+.++++ ..++++|+++..+..... .++..+..+.+ ...|....++ +.++||.|++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 3899999999999988876 357788777766544443 33334555444 3344443333 4678999995
Q ss_pred -cc-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 115 -SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 115 -~~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+. .+++..++ ...+|.++.++|||||++++++-...
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 22 22332222 24799999999999999999876654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=87.66 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=84.1
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CC--CCCCCccEEEeccccc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 119 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp--~~~~sFDlI~~~~~~l 119 (444)
.+||||||.|.+...+|. .+++|+|+...-+..+..+..+....++.+...|+.. ++ ++++++|.|+..+. -
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 799999999999999987 4789999998777666655555556678888888666 32 45789999997662 4
Q ss_pred cccccH--------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh--cCeEEEe
Q 013393 120 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS--MCWKIVS 176 (444)
Q Consensus 120 ~~~~d~--------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~--~gf~~v~ 176 (444)
+|.... ..++..+.++|+|||.+.+.+.. ...+..+.+.++. .+|+...
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--------~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--------EEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--------HHHHHHHHHHHHhcCcCeEEcc
Confidence 443211 37999999999999999996443 3445666666666 3777664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=89.49 Aligned_cols=101 Identities=16% Similarity=0.046 Sum_probs=74.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHH------------HHHcCCCcEEEEecCccCCCC---CCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SRS 108 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~------------a~e~~~~~~~~~~d~~~lp~~---~~s 108 (444)
.+||+.|||.|.-+.+|++. .|+|+|+|+..+.....+. ...++.++.+.++|+..++.. .+.
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 38999999999999999986 6888888877665432210 112355788999998888642 267
Q ss_pred ccEEEeccccccccccH-HHHHHHHHhhcCCCeEEEEEc
Q 013393 109 FELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 109 FDlI~~~~~~l~~~~d~-~~~L~ei~rvLkPGG~lvis~ 146 (444)
||+|+=..++.+..++. .++.+.+.++|+|||.+++..
T Consensus 125 fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 125 FDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99998766544443333 489999999999999988743
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=90.02 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=84.2
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..++.+ .++++|+++ .+++.++++..++.+...|+..+.. +++||+|+++....+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp-----~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP-----EFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 37999999999998888663 466666555 5556666655567888888776653 4689999997643332
Q ss_pred ccc-------------------HHHHHHHHHhhcCCCeEEEEE--cCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec-
Q 013393 122 LQR-------------------DGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD- 179 (444)
Q Consensus 122 ~~d-------------------~~~~L~ei~rvLkPGG~lvis--~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~- 179 (444)
... ...++.....+|+|+|.+.+. ..+.|... . .-.+...++++.||....--+
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~s-l---~~~~y~~~l~~~g~~~~~~~~~ 215 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGT-M---KSNKYLKWSKQTGLVTYAGCGI 215 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccccc-C---CHHHHHHHHHhcCcEecCCCCc
Confidence 110 245677888999999977664 22222111 1 124678899999997654433
Q ss_pred ceeEe
Q 013393 180 QTVIW 184 (444)
Q Consensus 180 ~~~~w 184 (444)
++.+|
T Consensus 216 ~~~~~ 220 (279)
T PHA03411 216 DTSIY 220 (279)
T ss_pred cccee
Confidence 33443
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=91.84 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc------CCCcEEEEecCcc-CCCCCCCccEE
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKR-LPYPSRSFELA 112 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~------~~~~~~~~~d~~~-lp~~~~sFDlI 112 (444)
.+++|||||||+|.++..+++. .++++|+++. .++.|++. ..++.+...|... +.-..++||+|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~-----vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ-----VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 3458999999999999988763 4566666554 44454443 2456777777543 22224689999
Q ss_pred Eeccccccccc---cHHHHHHHHHhhcCCCeEEEEEc
Q 013393 113 HCSRCRIDWLQ---RDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 113 ~~~~~~l~~~~---d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
++....-...+ ....+++++.+.|+|||.+++..
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 97531111111 12589999999999999999853
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-07 Score=92.10 Aligned_cols=127 Identities=16% Similarity=0.104 Sum_probs=83.5
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH------------cCCCcEEEEecCcc-CCCC
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE------------RGIPSTLGVLGTKR-LPYP 105 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e------------~~~~~~~~~~d~~~-lp~~ 105 (444)
.++++||++|||+|..++.+++. .|+.+|++ +++++.|++ ...++.+.+.|... +.-.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID-----peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLD-----GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc
Confidence 34568999999999998888874 35555554 555566554 13466777788655 3334
Q ss_pred CCCccEEEecccccccc-----ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 106 SRSFELAHCSRCRIDWL-----QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~-----~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+++||+|++... -+.. ..-..+++.+.+.|+|||.+++...++.. ....+..+.+.+++.++.+.....
T Consensus 224 ~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~----~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 224 SSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD----APLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh----hHHHHHHHHHHHHHhCCceEEEEE
Confidence 578999998641 1110 11147899999999999999987654421 122334467778888886665443
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-07 Score=93.92 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=63.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .|+++|+++..+..++.+. +..+. ++.+...|....+...++||+|++... .
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l-~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-RRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 38999999999999998862 3778888776554444322 23333 466777776555444567999998753 3
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+. ....+.+.|+|||.+++..
T Consensus 160 ~~------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 DE------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred HH------hHHHHHHhcCCCCEEEEEe
Confidence 22 2335678999999998854
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=99.40 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=71.8
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC-CCCCCccEEEec---
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCS--- 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp-~~~~sFDlI~~~--- 115 (444)
.+|||+|||+|..+.++++ ..|+++|+++..+.....+ +...+. ++.+...|...++ +.+++||.|++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 3899999999998888775 2578888877666544433 333344 4577788877765 446789999962
Q ss_pred -c-ccccccc----------------cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 -R-CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 -~-~~l~~~~----------------d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
. ..+...+ ...++|.++.+.|||||++++++-...
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1 1111111 124679999999999999999876643
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.8e-07 Score=89.95 Aligned_cols=119 Identities=20% Similarity=0.276 Sum_probs=75.7
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|..+..++.. .|+++|+++..+.-+. +.|...+. +..+...|. --+. .++||+|+||-=.+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dl-f~~~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDL-FEPL-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeec-cccc-CCceeEEEeCCCCCCC
Confidence 6999999999999999873 6778877776554444 33444453 222333321 1122 3489999997322221
Q ss_pred c------------------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-eEEEe
Q 013393 122 L------------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 176 (444)
Q Consensus 122 ~------------------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g-f~~v~ 176 (444)
. .-...++.++.+.|+|||.+++..-. ..-..+.+++.+.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~---------~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL---------TQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC---------CcHHHHHHHHHhcCCceEEE
Confidence 1 01126888899999999999984321 23457888999999 55443
Q ss_pred e
Q 013393 177 K 177 (444)
Q Consensus 177 ~ 177 (444)
.
T Consensus 261 ~ 261 (280)
T COG2890 261 T 261 (280)
T ss_pred E
Confidence 3
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.4e-07 Score=88.24 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cCCCcEEEEecCccC-C-CCCCCccEEE
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL-P-YPSRSFELAH 113 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~l-p-~~~~sFDlI~ 113 (444)
++++||+||||.|..+..+++. +|+.+|+++..+..+...+... ...++.+...|.... . .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3568999999999999999875 3455555553332222222211 124577777775432 1 2356899999
Q ss_pred ecccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCCC
Q 013393 114 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYA 151 (444)
Q Consensus 114 ~~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~~ 151 (444)
+-.. -++.+. ...+++.+.+.|+|||.++....+.+.
T Consensus 171 ~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 171 VDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 8542 322221 247899999999999999987665543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=86.41 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=67.3
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCcc-CCCCCCCccEEEe
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKR-LPYPSRSFELAHC 114 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~-lp~~~~sFDlI~~ 114 (444)
++++||+||||+|.++..+++. .++++|+++..+..+...+.... ..++.+...|... +...+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3458999999999999888764 46667666654433332222211 2345566666433 2222578999998
Q ss_pred cccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 115 SRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 115 ~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
... .+.... ...+++.+.+.|+|||.+++....+
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 652 222121 3578999999999999999975543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=91.00 Aligned_cols=103 Identities=19% Similarity=0.382 Sum_probs=72.1
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHH--c----CCCcEEEEecCc------cCCCCCCCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE--R----GIPSTLGVLGTK------RLPYPSRSFE 110 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e--~----~~~~~~~~~d~~------~lp~~~~sFD 110 (444)
..+||+|||-|.-..-.-++ .++|+||+...+.+++.+.-.- + --++.|..+|.. .+++++.+||
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fD 198 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFD 198 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcc
Confidence 47999999999755544443 6788888876665555432211 1 124677777732 2456666799
Q ss_pred EEEecccccccc----ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 111 LAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 111 lI~~~~~~l~~~----~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
+|-|-+| +||. +....+|.++.+.|||||+|+-+.|..
T Consensus 199 ivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 199 IVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred eeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 9999885 7773 233479999999999999999988773
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=87.42 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=69.1
Q ss_pred ccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcc----hHHHHHhh--C--CceEEEcCcccchHHHHHHHH
Q 013393 15 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLS--H--DIIAMSLAPNDVHENQIQFAL 86 (444)
Q Consensus 15 t~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG----~~a~~La~--~--~V~gvdis~~dis~a~i~~a~ 86 (444)
|.|.+....+-.....+++.......++ +.-+|+-.||+|| ++++.+.+ . .-.-+.|.+.|+++..++.|+
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~-~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPG-RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS--S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCC-CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 3455555555444445553222222223 3347999999999 56666655 1 111245555566666666665
Q ss_pred Hc--------C-------------------------CCcEEEEecCccCCCCCCCccEEEeccccccccccH-HHHHHHH
Q 013393 87 ER--------G-------------------------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLEL 132 (444)
Q Consensus 87 e~--------~-------------------------~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~-~~~L~ei 132 (444)
+. + ..+.|...+....+.+.+.||+|+|.+.++.+.+.. .+++..+
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l 161 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRL 161 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHH
Confidence 42 1 125666777655333457899999999766653322 4899999
Q ss_pred HhhcCCCeEEEEEcCCC
Q 013393 133 DRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 133 ~rvLkPGG~lvis~p~~ 149 (444)
++.|+|||+|++.....
T Consensus 162 ~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSES 178 (196)
T ss_dssp GGGEEEEEEEEE-TT--
T ss_pred HHHcCCCCEEEEecCcc
Confidence 99999999999965443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.7e-07 Score=95.09 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=69.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC--CCCCCccEEEecc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR- 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~~~sFDlI~~~~- 116 (444)
.+|||+|||+|..+..+++. .++++|+++..+..++. .+...+. ++.+...|...++ ++ ++||+|++..
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE-NAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 48999999999999888763 57888877766544443 3333343 4677778876653 33 7899999742
Q ss_pred c----cccccc---------c-------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 117 C----RIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 117 ~----~l~~~~---------d-------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
| .+...+ + ...++.++.++|||||.+++++-...
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 1 111111 1 13589999999999999998775543
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.3e-07 Score=82.73 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=63.2
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
+|||+|||+|.++..++++ .++++|+++..+...+.+... ..++.+...|+.++++++.+||.|+++. -.+.
T Consensus 16 ~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~~--- 89 (169)
T smart00650 16 TVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL-PYNI--- 89 (169)
T ss_pred EEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC-Cccc---
Confidence 8999999999999999985 577777776544333322211 2367888899988888777899999864 2222
Q ss_pred HHHHHHHHHhh--cCCCeEEEEE
Q 013393 125 DGILLLELDRL--LRPGGYFVYS 145 (444)
Q Consensus 125 ~~~~L~ei~rv--LkPGG~lvis 145 (444)
....+..+.+. +.++|.++++
T Consensus 90 ~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred HHHHHHHHHhcCCCcceEEEEEE
Confidence 12344444432 4588998885
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.3e-07 Score=95.88 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=82.6
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc------------CCCcEEEEecCcc-CCCCC
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKR-LPYPS 106 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~------------~~~~~~~~~d~~~-lp~~~ 106 (444)
++++|||+|||+|..+..+++. +++.+|++ +.+++.+++. ..++.+...|..+ +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid-----~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD-----PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC-----HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 4568999999999999988874 35555555 4555555551 2456777777655 22334
Q ss_pred CCccEEEecccccccccc-----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 107 RSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d-----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
++||+|++.. ..+..+. ..++++++.+.|||||.++++..+++.. .+...++.+.+++.||.+.
T Consensus 372 ~~fDvIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 372 EKFDVIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCCCEEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCEEE
Confidence 7899999875 2332221 1368999999999999999977554322 2345577888888899433
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=83.64 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=81.9
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELA 112 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI 112 (444)
+.||. +|||.|.|+|.++.+|+. ..|+..++.......|..++..-. +..+.+...|..+.-+++ .||.|
T Consensus 92 i~pg~---rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav 167 (256)
T COG2519 92 ISPGS---RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAV 167 (256)
T ss_pred CCCCC---EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEE
Confidence 44555 999999999999999995 367777666544433333222211 223666677776665554 89999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
+.- .+++..++..+.++|+|||.+++-.|.. .+-....+.+++.||..++
T Consensus 168 ~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~v--------eQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 168 FLD------LPDPWNVLEHVSDALKPGGVVVVYSPTV--------EQVEKTVEALRERGFVDIE 217 (256)
T ss_pred EEc------CCChHHHHHHHHHHhCCCcEEEEEcCCH--------HHHHHHHHHHHhcCccchh
Confidence 843 2788899999999999999999977663 2334445556666885443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-07 Score=87.86 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 96 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~ 96 (444)
......+.+.+. ++++. +|||||||+|.++..|+.. .|+++|..+.-...++..++.....++.+..
T Consensus 58 P~~~a~~l~~L~-----l~pg~---~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALD-----LKPGD---RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTT-----C-TT----EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHh-----cCCCC---EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 333444444553 45665 8999999999999888762 3678877775444444444333334778888
Q ss_pred ecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 97 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 97 ~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
.|...---....||.|++..+ ..-. =..+.+.||+||++++-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~~i------p~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VPEI------PEALLEQLKPGGRLVAP 171 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEE
T ss_pred cchhhccccCCCcCEEEEeec-cchH------HHHHHHhcCCCcEEEEE
Confidence 885432223468999998874 3321 23466779999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-07 Score=91.37 Aligned_cols=104 Identities=19% Similarity=0.408 Sum_probs=67.0
Q ss_pred CCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHc----------CCCcEEEEecCccC----CCC-
Q 013393 44 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL----PYP- 105 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~----------~~~~~~~~~d~~~l----p~~- 105 (444)
...+|||+|||-|.-..-... +.++|+|++...+.++..+...-. .-.+.+...|.... .++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 445899999998864444433 367899998887777665552211 12345666664321 133
Q ss_pred -CCCccEEEecccccccc-ccH---HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 106 -SRSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 106 -~~sFDlI~~~~~~l~~~-~d~---~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...||+|-|-++ +||. .+. ..+|.++...|+|||+|+.++|.
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 359999999985 7773 333 36999999999999999998776
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=97.26 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccC-CCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-PYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~l-p~~~~sFDlI~~~~~~ 118 (444)
++|||+|||+|.++.+++.+ .|+++|+++..+..+..+... ++. ++.+...|..+. .-..++||+|++.--.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 48999999999999999874 478888887776655544433 333 467888885442 1114689999985311
Q ss_pred c----------cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 119 I----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 119 l----------~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
+ ....+...++..+.++|+|||.++++..... .....+.+.+.|+.+...
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEE
Confidence 1 1123456788999999999999988654321 111255667777765544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=81.24 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=61.9
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecC-ccCCCCCCCccEEEe
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGT-KRLPYPSRSFELAHC 114 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~-~~lp~~~~sFDlI~~ 114 (444)
++++. +|||||||+|..++.|++ ..|+.++..+.-...+..++.. .+. ++.+.+.|. ..+| +...||.|++
T Consensus 70 ~~~g~---~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-lg~~nV~v~~gDG~~G~~-~~aPyD~I~V 144 (209)
T COG2518 70 LKPGD---RVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-LGYENVTVRHGDGSKGWP-EEAPYDRIIV 144 (209)
T ss_pred CCCCC---eEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH-cCCCceEEEECCcccCCC-CCCCcCEEEE
Confidence 34454 899999999999999987 3666676655322222222222 243 677777774 3344 2478999998
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
..+ ...++ ..+.+.|||||++++-
T Consensus 145 taa-a~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 145 TAA-APEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred eec-cCCCC------HHHHHhcccCCEEEEE
Confidence 774 43332 2356679999999984
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=88.54 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=78.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCcc----CCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR----LPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~----lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+..+. +..+ .++.+...|+.+ +++.+++||+|++..-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP- 376 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENA-RRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP- 376 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC-
Confidence 38999999999999999874 6788888877766555333 3333 357888888653 3355678999998642
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+. .....+..+.+ ++|++.+++|..+. ..-+.+..+ .+.||++.....
T Consensus 377 --r~-g~~~~~~~l~~-~~~~~ivyvSCnp~--------tlaRDl~~L-~~~gY~l~~i~~ 424 (443)
T PRK13168 377 --RA-GAAEVMQALAK-LGPKRIVYVSCNPA--------TLARDAGVL-VEAGYRLKRAGM 424 (443)
T ss_pred --Cc-ChHHHHHHHHh-cCCCeEEEEEeChH--------HhhccHHHH-hhCCcEEEEEEE
Confidence 21 12345555555 69999999985431 112233433 356888776654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=99.07 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=81.6
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc----------------CCCcEEEEecCccCCCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----------------GIPSTLGVLGTKRLPYP 105 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~----------------~~~~~~~~~d~~~lp~~ 105 (444)
.+|||+|||+|..+..+++. .++++|+++..+..+..+..... ..++.+...|.....-.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 47999999999999998863 58899998877766655443321 02467777775443211
Q ss_pred -CCCccEEEecccccc-------------c------------c--------ccH----HHHHHHHHhhcCCCeEEEEEcC
Q 013393 106 -SRSFELAHCSRCRID-------------W------------L--------QRD----GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 106 -~~sFDlI~~~~~~l~-------------~------------~--------~d~----~~~L~ei~rvLkPGG~lvis~p 147 (444)
..+||+|+|+--.+. + . +|. .+++.++.++|+|||++++-.
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi- 278 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM- 278 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE-
Confidence 236999999621110 0 0 111 367888889999999999832
Q ss_pred CCCCCChhhHHHHHHHH-HHHHhcCeEEEee
Q 013393 148 EAYAHDPENRRIWNAMY-DLLKSMCWKIVSK 177 (444)
Q Consensus 148 ~~~~~~~~~~~~~~~l~-~l~~~~gf~~v~~ 177 (444)
+..+-+.+. +++++.||+....
T Consensus 279 --------G~~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 279 --------GGRPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred --------CccHHHHHHHHHHHHCCCCeeEE
Confidence 223445677 6888899876544
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.6e-07 Score=84.27 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=77.9
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccC-C--CCCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P--YPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l-p--~~~~sFDlI~~~~~~ 118 (444)
.+||||||.|.+...+|++ .++|+++...-+..+. +.+.+.+. |+.+...|+..+ + +++++.|-|+.++.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 7999999999999999984 7899998876554444 56677788 899988886553 2 45569999998773
Q ss_pred ccccccH--------HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~~d~--------~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
-+|.... ..+++.+.++|+|||.|.+.+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6664322 37999999999999999996543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-06 Score=78.08 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=78.8
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHH
Q 013393 4 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHEN 80 (444)
Q Consensus 4 ~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a 80 (444)
.|-.+..|.+. .+....+...+.+.+.+.. ...+ .+|||+|||+|.++..++. ..|+++|+++..+..+
T Consensus 21 ~g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~----~~~~---~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a 92 (199)
T PRK10909 21 RGRKLPVPDSP-GLRPTTDRVRETLFNWLAP----VIVD---ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL 92 (199)
T ss_pred CCCEeCCCCCC-CcCcCCHHHHHHHHHHHhh----hcCC---CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence 45556665532 2345555555555555532 1112 3899999999999986543 3677887776554433
Q ss_pred HHHHHHHcCC-CcEEEEecCcc-CCCCCCCccEEEecccccccccc-HHHHHHHHHh--hcCCCeEEEEEcCC
Q 013393 81 QIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 148 (444)
Q Consensus 81 ~i~~a~e~~~-~~~~~~~d~~~-lp~~~~sFDlI~~~~~~l~~~~d-~~~~L~ei~r--vLkPGG~lvis~p~ 148 (444)
.. .++..+. ++.+...|... ++...++||+|++.-- |... ...++..+.. +|+|+|.++++.+.
T Consensus 93 ~~-Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 93 IK-NLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HH-HHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 32 2233333 56777777544 3223457999998752 2222 2345555544 48999999997554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=82.75 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=67.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
+.++|+|||+|+|.++..++++ +++..|+ +..++.+++ ..++.+..+|+. -++|. +|+++.++++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3458999999999999999874 4455554 333444444 667888888876 66765 99999999644
Q ss_pred cccccHH--HHHHHHHhhcCCC--eEEEEEcCC
Q 013393 120 DWLQRDG--ILLLELDRLLRPG--GYFVYSSPE 148 (444)
Q Consensus 120 ~~~~d~~--~~L~ei~rvLkPG--G~lvis~p~ 148 (444)
.| ++.. .+|+++++.|+|| |+++|.+.-
T Consensus 170 ~~-~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 170 DW-SDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hc-chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 44 4443 8999999999999 999997643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=82.96 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=66.1
Q ss_pred CCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccC-C-----CCCCCccE
Q 013393 45 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l-p-----~~~~sFDl 111 (444)
+++|||+|||+|.-+..++. ..++++|+++.....+..++ ++.+. .+.+...|+.+. + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 45899999999987666654 25788888875554444333 33343 466777775442 2 12468999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|++-.. .+....++.++.+.|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 986531 2455688999999999999988743
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-06 Score=80.47 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=68.8
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcE-EEEecCcc-----CCCCCCCccEEEec
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKR-----LPYPSRSFELAHCS 115 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~-~~~~d~~~-----lp~~~~sFDlI~~~ 115 (444)
.++|||+|||||.|+..+++. .|+++|+++.++.+.. .....+. +...++.. .+..-..||+++++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l-----~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS 150 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL-----RQDERVKVLERTNIRYVTPADIFPDFATFDVSFIS 150 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----hcCCCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence 348999999999999999885 5788887776554422 2222221 22223322 22112357777665
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC------------CCh-hhHHHHHHHHHHHHhcCeEEEee
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDP-ENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~------------~~~-~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.+ ..+..+.+.|+| |.+++-..+.+. +++ .....-..+...+.+.||++...
T Consensus 151 ~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 LI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred hH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 43 248889999999 777754333221 111 11223346666677778876544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-06 Score=80.62 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=80.5
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCC---CC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYP---SR 107 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~---~~ 107 (444)
++.||. +|||.|+|+|+++.+|++ ..|...|+...-...++.++.. .+. ++.+...|...--|+ ++
T Consensus 37 ~i~pG~---~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 37 DIRPGS---RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp T--TT----EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCC---EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccC
Confidence 566777 999999999999999986 2577777665444444433322 233 578888887554342 36
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhc-CCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvL-kPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
.||.|+.-. +++..++..+.++| ||||++++-.|.. .+-....+.+++.||..+.
T Consensus 113 ~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~i--------eQv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 113 DFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCI--------EQVQKTVEALREHGFTDIE 168 (247)
T ss_dssp SEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSH--------HHHHHHHHHHHHTTEEEEE
T ss_pred cccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCH--------HHHHHHHHHHHHCCCeeeE
Confidence 799997432 67778999999999 8999999977763 3444566677778997664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=78.77 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=61.6
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC----CCcEEEEecCcc-C--C-CCCCCccEE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFELA 112 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~----~~~~~~~~d~~~-l--p-~~~~sFDlI 112 (444)
.++|||+|||+|..+..++.. .|+..|..+ +-+.....++.++ .++.+...+..+ . . ...++||+|
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 348999999999888777764 677777766 3333333444332 345566665322 1 1 234689999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++.| +......+.++.-+.++|+|+|.++++.+.
T Consensus 124 lasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 124 LASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99996 555677889999999999999998876543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-06 Score=81.82 Aligned_cols=94 Identities=9% Similarity=0.078 Sum_probs=61.9
Q ss_pred eEEEECCCcchHHHHHhhCC--ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc-cc
Q 013393 47 NVLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~--V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~-~~ 123 (444)
+|||+|||+|.++..++++. .....+.+.|+++.+.+.|+++...+.+...|+...++ +++||+|+|+-=.... ..
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~ 130 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTS 130 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcccc
Confidence 89999999999999887530 00123444455555666776665567888888776554 4689999997411110 01
Q ss_pred c----------HHHHHHHHHhhcCCCeE
Q 013393 124 R----------DGILLLELDRLLRPGGY 141 (444)
Q Consensus 124 d----------~~~~L~ei~rvLkPGG~ 141 (444)
+ ...++..+.++++||+.
T Consensus 131 d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 131 DFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 23688888897777776
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.8e-06 Score=86.05 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=68.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccCC--C--CCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLP--Y--PSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~lp--~--~~~sFDlI~~~ 115 (444)
++|||+|||+|.++..++.. .|+++|+++..+..+..+. ..++. ++.+...|+.... + ..++||+|++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~-~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNV-ELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 48999999999998775542 5888888887766555433 33343 4678788865431 1 24689999987
Q ss_pred cccccc--------cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDW--------LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~--------~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
--.+.- ..+...++..+.++|+|||.++..+-+
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 421111 123446677788999999999976543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.5e-06 Score=80.74 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=65.4
Q ss_pred eEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHcCC----CcEEEEecC--cc--CCCCCCCccEE
Q 013393 47 NVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGT--KR--LPYPSRSFELA 112 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~~~----~~~~~~~d~--~~--lp~~~~sFDlI 112 (444)
+||+||||.|.....+++. .+.++|++|. +++..+++.. .....+.|. .. -|...+++|.|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-----Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-----AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-----HHHHHHhccccchhhhcccceeccchhccCCCCcCccceE
Confidence 7999999999988888763 3566666654 4455444421 222223332 22 34557899999
Q ss_pred Eecccccccc-ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++.+++.... ......+.+++++|||||.+++.+-.
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 9988533332 33458999999999999999996543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.9e-06 Score=80.98 Aligned_cols=156 Identities=19% Similarity=0.318 Sum_probs=100.9
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHcCCC--
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP-- 91 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~~~~-- 91 (444)
|++.....+.+.+......|+..+.+-+||||.||.|......+.. .+.-.|+++..+...+ +.+++++..
T Consensus 111 GIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i 189 (311)
T PF12147_consen 111 GIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDI 189 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccc
Confidence 3444444555555554445655556668999999999877666542 3455566665543333 345556653
Q ss_pred cEEEEecCcc---CCCCCCCccEEEeccccccccccHH---HHHHHHHhhcCCCeEEEEEcCCCCCCChhhH--------
Q 013393 92 STLGVLGTKR---LPYPSRSFELAHCSRCRIDWLQRDG---ILLLELDRLLRPGGYFVYSSPEAYAHDPENR-------- 157 (444)
Q Consensus 92 ~~~~~~d~~~---lp~~~~sFDlI~~~~~~l~~~~d~~---~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~-------- 157 (444)
++|...|+.+ +.--+...++++.+. +++..+|-. ..+.-+.+.+.|||+++.+..++.+..+.-.
T Consensus 190 ~~f~~~dAfd~~~l~~l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~ 268 (311)
T PF12147_consen 190 ARFEQGDAFDRDSLAALDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRD 268 (311)
T ss_pred eEEEecCCCCHhHhhccCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccC
Confidence 3788777443 221134579999888 577766643 5788999999999999999877654432110
Q ss_pred -HHH-------HHHHHHHHhcCeEEEee
Q 013393 158 -RIW-------NAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 158 -~~~-------~~l~~l~~~~gf~~v~~ 177 (444)
..| .++.++.+.+||+.+..
T Consensus 269 g~~WvMRrRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 269 GKAWVMRRRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred CCceEEEecCHHHHHHHHHHcCCchhhh
Confidence 123 48899999999976544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-06 Score=80.93 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=84.5
Q ss_pred cCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcC
Q 013393 10 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG 89 (444)
Q Consensus 10 fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~ 89 (444)
|-|.|++|.-+-+++.+.+.-- .-.++..+.++||+|+|.|..+..++.. --++-+..+|..|+..-++++
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~------~p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ 154 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIG------GPAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKN 154 (288)
T ss_pred ccccCceEEecHHHHHHHHhcC------CCccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcC
Confidence 5677888888888776554421 1234566679999999999999888764 112334455666666666554
Q ss_pred CCcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCC-CeEEEEE
Q 013393 90 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYS 145 (444)
Q Consensus 90 ~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkP-GG~lvis 145 (444)
-++ ....++.-.+-+||+|.|-+ ++.-+.++.++|+.+..+|+| .|..+++
T Consensus 155 ynV----l~~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 155 YNV----LTEIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred Cce----eeehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 433 22223322345699999988 577678888999999999999 8988875
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=83.63 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=75.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccC----CCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL----PYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~l----p~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+..+. +..+ .++.+...|..+. ++.+++||+|++..-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~-~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP- 371 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNA-ELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP- 371 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHH-HHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC-
Confidence 38999999999999999873 6888888877765555433 3333 3678888886542 234567999997542
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
...-...++..+.+ ++|++.++++..+ .....-...+.+.||++....
T Consensus 372 --r~G~~~~~l~~l~~-l~~~~ivyvsc~p---------~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 372 --RKGCAAEVLRTIIE-LKPERIVYVSCNP---------ATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred --CCCCCHHHHHHHHh-cCCCEEEEEcCCH---------HHHHHHHHHHHHCCeeEEEEE
Confidence 11112456666554 8999988886432 122222334455688765543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=79.23 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcE
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PST 93 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~ 93 (444)
+...|+..+...+........+.+...++||||||+|.....++.+ .++|+|+++..+..++.+.+...+. .+.
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 4577888888887543222222233457999999999777766653 5788888877766666544443123 334
Q ss_pred EEEe-cCccC----CCCCCCccEEEecc
Q 013393 94 LGVL-GTKRL----PYPSRSFELAHCSR 116 (444)
Q Consensus 94 ~~~~-d~~~l----p~~~~sFDlI~~~~ 116 (444)
+... +...+ ..+.+.||+|+|+-
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCC
Confidence 4322 22111 12457899999985
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=77.52 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=90.3
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc----------------------------------
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---------------------------------- 88 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---------------------------------- 88 (444)
.-+||=-|||.|.++-.++.+ .+.|.++|.-|+-... +....
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 347999999999999999987 3556666655532211 11110
Q ss_pred --------CCCcEEEEecCccCCCCC---CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh--
Q 013393 89 --------GIPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-- 155 (444)
Q Consensus 89 --------~~~~~~~~~d~~~lp~~~---~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~-- 155 (444)
..+.....+|+.+...++ ++||+|++.+ .+.-.++.-.++..+.++|||||+++=..|-.|...+.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~ 213 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSI 213 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCC
Confidence 001122233433333233 6899999887 56666777899999999999999998777776654443
Q ss_pred -----hHHHHHHHHHHHHhcCeEEEeeec
Q 013393 156 -----NRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 156 -----~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
-.-.++++..++++.||+++.++.
T Consensus 214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 223688999999999999987655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.4e-06 Score=77.17 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=80.9
Q ss_pred CeEEEECCCcchHHHHHhh-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC---CCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~---~~sFDlI~~~~~~l~~ 121 (444)
-++|||||=+......-.. -.|+.+|+.+.+ -.+...|+.+.|.| +++||+|+|+. ++.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SL-VLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSL-VLNF 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEE-EEee
Confidence 4799999986543322111 135566655422 22456777776654 67899999999 7999
Q ss_pred cccHH---HHHHHHHhhcCCCeE-----EEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDG---ILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~---~~L~ei~rvLkPGG~-----lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++++. +.++.+.+.|+|+|. |++..|.+..... ..-.-..+..+++.+||..+..+.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS-Ry~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS-RYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc-cccCHHHHHHHHHhCCcEEEEEEe
Confidence 98775 899999999999999 8888777532110 011235788999999999887654
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.2e-06 Score=77.99 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=77.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHH-HHcCC----------------CcEEEEecCccCCCC-
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFA-LERGI----------------PSTLGVLGTKRLPYP- 105 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a-~e~~~----------------~~~~~~~d~~~lp~~- 105 (444)
.+||..|||.|.-...|+++ .|+|+|+|+. .++.+ ++++. ++.+.++|+-.++..
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~-----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT-----AIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTEEEEEEES-HH-----HHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CeEEEeCCCChHHHHHHHHCCCeEEEEecCHH-----HHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 38999999999999999987 4566665554 44444 22221 345677787776533
Q ss_pred CCCccEEEecccccccc-ccHHHHHHHHHhhcCCCeEEEEEcC--CCC--CCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 106 SRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSP--EAY--AHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p--~~~--~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.++||+|+=..++.... +...++.+.+.++|+|||.+++.+- ... ...+.. -.-.++.+++. .+|++...+.
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~-v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS-VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----HHHHHHHHT-TTEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC-CCHHHHHHHhc-CCcEEEEEec
Confidence 25799999654332222 3446899999999999999444321 111 111111 12247778887 7887766544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.6e-06 Score=86.50 Aligned_cols=102 Identities=19% Similarity=0.143 Sum_probs=74.0
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC--CCCCCccEEEecc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 116 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~~~sFDlI~~~~ 116 (444)
....+||||||.|.+...+|.. .++|+|+...-+..+..+ +.+.+. ++.+...|+..+. ++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~-~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKL-AGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHH-HHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3457999999999999999874 789999987655554433 334444 5566555543322 6788999999877
Q ss_pred ccccccccH--------HHHHHHHHhhcCCCeEEEEEcC
Q 013393 117 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 117 ~~l~~~~d~--------~~~L~ei~rvLkPGG~lvis~p 147 (444)
--+|.... ..++..+.++|||||.+.+.+.
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 35663321 3799999999999999999654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.5e-06 Score=81.29 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=65.6
Q ss_pred CeEEEECCCcc----hHHHHHhhC--C-ceEEEcCcccchHHHHHHHHHc--------C---------------------
Q 013393 46 RNVLDVGCGVA----SFGAYLLSH--D-IIAMSLAPNDVHENQIQFALER--------G--------------------- 89 (444)
Q Consensus 46 ~rVLDVGCGtG----~~a~~La~~--~-V~gvdis~~dis~a~i~~a~e~--------~--------------------- 89 (444)
-+|+..||.|| ++++.+.+. . -..+.|.+.|+++..++.|++. +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 37999999999 455555542 0 0023344445555555554432 0
Q ss_pred -------CCcEEEEecCccCCCC-CCCccEEEecccccccc-ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 90 -------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 90 -------~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+.|...|....+++ .+.||+|+|.++++++. +...+++.++.+.|+|||+|++....
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 1234555665554443 57899999999655553 23468999999999999999985433
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=78.77 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=81.1
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcc----hHHHHHhhCCc----eEEEcCcccchHHHHHHH
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLSHDI----IAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG----~~a~~La~~~V----~gvdis~~dis~a~i~~a 85 (444)
-|.|.+..+++...-.+.++.....- .+ +.-+|.-.||+|| ++++.|.+... ..+.|.+.|++...++.|
T Consensus 68 ~T~FFR~~~~f~~l~~~v~p~l~~~~-~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A 145 (268)
T COG1352 68 VTEFFRDPEHFEELRDEVLPELVKRK-KG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKA 145 (268)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhhc-cC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHH
Confidence 46677777776665555554221111 11 3447999999999 56666655321 235555666666666655
Q ss_pred HHc---------CC-------------------------CcEEEEecCccCCCCCCCccEEEeccccccccc-cHHHHHH
Q 013393 86 LER---------GI-------------------------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-RDGILLL 130 (444)
Q Consensus 86 ~e~---------~~-------------------------~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~-d~~~~L~ 130 (444)
+.. +. .+.|...+...-++..+.||+|+|.+.++.+.. ...+++.
T Consensus 146 ~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~ 225 (268)
T COG1352 146 RAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILR 225 (268)
T ss_pred hcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHH
Confidence 432 11 123444443333323467999999996555532 2348999
Q ss_pred HHHhhcCCCeEEEEEcCC
Q 013393 131 ELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 131 ei~rvLkPGG~lvis~p~ 148 (444)
.++..|+|||+|++-...
T Consensus 226 ~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 226 RFADSLKPGGLLFLGHSE 243 (268)
T ss_pred HHHHHhCCCCEEEEccCc
Confidence 999999999999995433
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=79.40 Aligned_cols=116 Identities=21% Similarity=0.291 Sum_probs=76.6
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc----C-CCcEE-EEecCccCCCCCCCccEEEecc----
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-IPSTL-GVLGTKRLPYPSRSFELAHCSR---- 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~----~-~~~~~-~~~d~~~lp~~~~sFDlI~~~~---- 116 (444)
.|||-=||||++..... ..|..+.+.|+.+.|++-|+.+ + .+..+ .+.|+..+|+++++||.|+|-.
T Consensus 200 ~vlDPFcGTGgiLiEag---l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGr 276 (347)
T COG1041 200 LVLDPFCGTGGILIEAG---LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGR 276 (347)
T ss_pred EeecCcCCccHHHHhhh---hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCc
Confidence 89999999999876542 2333444445555555555544 2 23333 3449999999988999999831
Q ss_pred -cccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 117 -CRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 117 -~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
....- .. ...+|+.+.++||+||++++..|.. -...+.+.+|+++..-.
T Consensus 277 st~~~~-~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------------~~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 277 STKIKG-EGLDELYEEALESASEVLKPGGRIVFAAPRD-------------PRHELEELGFKVLGRFT 330 (347)
T ss_pred cccccc-ccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------chhhHhhcCceEEEEEE
Confidence 00111 11 3588999999999999999987721 12345677888876644
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=80.50 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=66.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCC-CCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~-~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+.. .++..+. ++.+...|+..+.. ..++||+|++..- .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~-n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---r 250 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQ-SAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---R 250 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---C
Confidence 48999999999999999974 68888888776655543 3344444 57888888766542 2457999998741 1
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
......+.+...-++|++.++++..+
T Consensus 251 -~G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 251 -RGIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred -CCccHHHHHHHHHcCCCeEEEEECCc
Confidence 11122333444457899888887654
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=75.88 Aligned_cols=96 Identities=21% Similarity=0.377 Sum_probs=60.9
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-------------------------------
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI------------------------------- 90 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~------------------------------- 90 (444)
..+|||||-+|.++..+++ +.++|+||++.-+ +.|++.-.
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-----~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-----QRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-----HHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4799999999999998887 4788888876544 44443200
Q ss_pred ---------CcEEE----EecCc-cCCCCCCCccEEEeccc----ccccccc-HHHHHHHHHhhcCCCeEEEEEc
Q 013393 91 ---------PSTLG----VLGTK-RLPYPSRSFELAHCSRC----RIDWLQR-DGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 91 ---------~~~~~----~~d~~-~lp~~~~sFDlI~~~~~----~l~~~~d-~~~~L~ei~rvLkPGG~lvis~ 146 (444)
++.+. +.+.. -+.+....||+|.|-.. .+.|..+ ...+|+.+.++|.|||+|++.-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 00000 11111 11233567999999531 1333222 2489999999999999999843
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-05 Score=66.54 Aligned_cols=100 Identities=29% Similarity=0.421 Sum_probs=65.5
Q ss_pred EEEECCCcchHH--HHHhhC--CceEEEcCcccchHHHHHHHHHcCCC-cEEEEecCcc--CCCCC-CCccEEEeccccc
Q 013393 48 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 119 (444)
Q Consensus 48 VLDVGCGtG~~a--~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~--lp~~~-~sFDlI~~~~~~l 119 (444)
+||+|||+|... ..+... .++++|+++.++......... .... +.+...+... +++.. ..||++ +..+..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333332 456666666544441111111 1111 4566666555 77776 489999 776556
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
++.. ....+.++.++|+|+|.+++......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 6544 78999999999999999999766543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8e-06 Score=76.91 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=83.9
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccC--CCCCCCccEEEecc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRL--PYPSRSFELAHCSR 116 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~l--p~~~~sFDlI~~~~ 116 (444)
..+|||...|-|.+++..+++ .|+.++.+|.-+.-+.++- -.+ ...+.+..+|+.+. .|+|++||+|+---
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 348999999999999998885 4666776665442222110 001 12356667775553 37899999998632
Q ss_pred cccccc--ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 117 CRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 117 ~~l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
-.+... -.-..+.+|++|+|||||.++--+-.+-.+. ........+.+.+++.||.++...
T Consensus 214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry-rG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY-RGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc-ccCChhHHHHHHHHhcCceeeeee
Confidence 222221 1225899999999999999986443322111 112334578889999999876553
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-06 Score=84.44 Aligned_cols=103 Identities=18% Similarity=0.296 Sum_probs=79.2
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEE
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAH 113 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~ 113 (444)
.+.++. .++|+|||.|....++.. .+++|++.++.............. .....+.+.+....||+++.||.+.
T Consensus 107 ~~~~~~---~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 107 SCFPGS---KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred cCcccc---cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 444554 799999999988887765 467777777665555443332222 2234456778888999999999999
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+.. ...|.++...+++|++|+++|||+++.
T Consensus 184 ~ld-~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 184 FLE-VVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EEe-ecccCCcHHHHHHHHhcccCCCceEEe
Confidence 999 578889999999999999999999997
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=7e-06 Score=81.74 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=64.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCc--EEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~--~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++|||||||||.++..-+++ .|++++.+.+ .+-..+.++.++... .+..+..+++..|.++.|+|+|-.. ..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i--a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM-Gy 138 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSI--ADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM-GY 138 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHH--HHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh-hH
Confidence 49999999999998888774 6888877754 344555666666554 4444446665555678999998531 22
Q ss_pred cc---ccHHHHHHHHHhhcCCCeEEE
Q 013393 121 WL---QRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 121 ~~---~d~~~~L~ei~rvLkPGG~lv 143 (444)
++ .=.+..|-.=.+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 21 222345556678999999877
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.6e-05 Score=76.76 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=75.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCC-CCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~-~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..++.. .|+++|+++..+..+.. .++..+. ++.+...|..+... ..++||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~-N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQ-SAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 38999999999999999874 68888888776654443 3333444 67888888755321 1246999998642 2
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
..-...++..+. .++|++.++++..+. ..-+.+..+ .||++.....
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~--------TlaRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQ--------TMAKDIAEL---SGYQIERVQL 356 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHH--------HHHHHHHHh---cCceEEEEEE
Confidence 111234555554 479999999975431 223344444 5887765543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-05 Score=78.38 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred CCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC-C----CCCCcc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFE 110 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-~----~~~sFD 110 (444)
++++|||||||+|..+..++.. .++++|.++.....+...+ ++.|. .+.+..+|+.+ ++ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3458999999999999988862 4778888775554444333 33344 46777777533 22 1 136899
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
+|+.-. .-.+...++..+.+.|+|||.+++-
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 998543 2345678999999999999999874
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.5e-05 Score=83.62 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--------CceEEEcCcccchHHHHHHHHHc--CC
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALER--GI 90 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--------~V~gvdis~~dis~a~i~~a~e~--~~ 90 (444)
++.|.+.+.+.+.-....-....+...|||||||+|.+....+++ .|.+++-++......+ +..+.. +.
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~ 241 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGD 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCC
Confidence 345555555555421111111112458999999999887655442 6788887775443332 222233 45
Q ss_pred CcEEEEecCccCCCCCCCccEEEecccccccc--ccHHHHHHHHHhhcCCCeEEE
Q 013393 91 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lv 143 (444)
.+.+...|++++..| .++|+|++=. +..+. +--.+.|....|.|||||.++
T Consensus 242 ~V~vi~~d~r~v~lp-ekvDIIVSEl-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 242 KVTVIHGDMREVELP-EKVDIIVSEL-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TEEEEES-TTTSCHS-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeCcccCCCCC-CceeEEEEec-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 688889999988766 4899999743 23332 222467888899999999877
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=74.44 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=66.9
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC-----CCCCCccE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-----~~~~sFDl 111 (444)
+++||+|||++|.-+..+++. .++++|+++.....+. ++.+..+. .+.+..+|+.+ ++ .+.++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 448999999999999998863 6788888775543333 33333343 56777777543 22 12368999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|+.-. .-.+...++..+.+.|+|||.+++-.
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99643 23566788999999999999999853
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=73.14 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=65.9
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCC--cEEEE-ecCcc-CC-CCCCCccEEEe
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP--STLGV-LGTKR-LP-YPSRSFELAHC 114 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~--~~~~~-~d~~~-lp-~~~~sFDlI~~ 114 (444)
+++||+||++.|.-+..|+.. .++++|+.+.....+...+++ .+.. +.+.. +|..+ +. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 458999999999988888763 477777776655555443333 2332 34444 34322 22 34689999984
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
-. .-.+...+|..+.++|+|||.+++-
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 32 3456679999999999999999973
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.2e-05 Score=74.59 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=48.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||||||+|.++..++++ .++++|+++..+........ . ..++.+...|+..++++ .||.|+++.
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~-~-~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI-A-AGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc-c-CCCEEEEEeccccCCch--hceEEEEcC
Confidence 48999999999999999885 56777766654433322111 1 34678888898887765 489999875
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.3e-05 Score=75.93 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=48.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..++++ .++++|+++.++..+..+.. ..++.+..+|+..+++++-.+|.|+++.
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 38999999999999999885 57777777655443332111 2567888899888876543358888764
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9e-06 Score=78.81 Aligned_cols=98 Identities=27% Similarity=0.251 Sum_probs=68.7
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccH
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
..+||+|||.|.....-....++|.| ++...+..++..+.. .....|+..+|+++.+||.+++.. ++||....
T Consensus 47 sv~~d~gCGngky~~~~p~~~~ig~D-----~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT~ 119 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGVNPLCLIIGCD-----LCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLSTR 119 (293)
T ss_pred ceeeecccCCcccCcCCCcceeeecc-----hhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhhH
Confidence 37999999999654321112344554 444444455544443 556788999999999999999877 67876544
Q ss_pred ---HHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 126 ---GILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 126 ---~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
..+++|+.|+|||||...+......
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 3799999999999999887554433
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=7e-05 Score=69.60 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHc---------------CCCcEEEEecCccC
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRL 102 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~---------------~~~~~~~~~d~~~l 102 (444)
|+||- +.||+|.|+|.++..++.- .-.|.+..+++..+..++.+.++ .....+.+.|....
T Consensus 80 L~pG~---s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 80 LQPGA---SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred hccCc---ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 55666 8999999999888776631 11122223444445555544433 12345667776665
Q ss_pred CCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 103 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 103 p~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
--+...||.|||... ..+..+++...|+|||.+++-
T Consensus 157 ~~e~a~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAA-------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccCCcceEEEccC-------ccccHHHHHHhhccCCeEEEe
Confidence 555678999998742 234567788889999999983
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.6e-05 Score=69.92 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=73.7
Q ss_pred CCeEEEECCCcchHHHHHh--h-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La--~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.++|+|+|||||.++...+ . ..|+|+|+.+..+ +...+.+.+.+.++.+.+.|..+.. +.||.++.+--.-.+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~~ 121 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCccc
Confidence 3479999999998765443 3 4799999998655 4444556666678899999887764 568988886422212
Q ss_pred c--ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 L--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~--~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. .| ..++..+.+.- -.+.+..... ..+-++...+..|+.+...
T Consensus 122 ~rhaD-r~Fl~~Ale~s----~vVYsiH~a~--------~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 122 RRHAD-RPFLLKALEIS----DVVYSIHKAG--------SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cccCC-HHHHHHHHHhh----heEEEeeccc--------cHHHHHHHHHhcCCeEEEE
Confidence 1 33 34566555543 2333322211 2345677888888866554
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.9e-05 Score=71.52 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=59.7
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEec-------CccCCCCCCCccEEEec
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-------TKRLPYPSRSFELAHCS 115 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d-------~~~lp~~~~sFDlI~~~ 115 (444)
.+||+|||+|..+..++. ..++++|+++..+.-+. +.|+......++.+.. ....+.+.++.|+++|+
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecccccccccccccccCceeEEecC
Confidence 699999999998888876 35666666654443222 2222223333333331 22233457899999997
Q ss_pred ccccccccc--------------------------HHHHHHHHHhhcCCCeEEEEEcC
Q 013393 116 RCRIDWLQR--------------------------DGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 116 ~~~l~~~~d--------------------------~~~~L~ei~rvLkPGG~lvis~p 147 (444)
--.+.. +| .-.++.-+-|.|+|||.+.+...
T Consensus 230 PPYI~~-dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 230 PPYIRK-DDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCcccc-cchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 422221 11 11356667789999999998644
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.5e-05 Score=80.34 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCCC--CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEE
Q 013393 24 YILALARMLKFPSD--KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLG 95 (444)
Q Consensus 24 y~~~l~~~l~~~~~--~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~ 95 (444)
|++....|+..... ..+++. +|||++||.|.=+.++++. .+++.|+++.-+...+ +.....|. ++.+.
T Consensus 94 yvQd~sS~l~~~~L~~~~~pg~---~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~ 169 (470)
T PRK11933 94 YIQEASSMLPVAALFADDNAPQ---RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALT 169 (470)
T ss_pred EEECHHHHHHHHHhccCCCCCC---EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEE
Confidence 44555555543211 334444 8999999999888777762 4677777664433222 22333354 44566
Q ss_pred EecCccCC-CCCCCccEEE----eccccccccccH------------------HHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 96 VLGTKRLP-YPSRSFELAH----CSRCRIDWLQRD------------------GILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 96 ~~d~~~lp-~~~~sFDlI~----~~~~~l~~~~d~------------------~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
..|...++ ...+.||.|+ |+.. ..+-.++ .++|.++.+.|||||+++.++=..
T Consensus 170 ~~D~~~~~~~~~~~fD~ILvDaPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 170 HFDGRVFGAALPETFDAILLDAPCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred eCchhhhhhhchhhcCeEEEcCCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 66766543 2246799999 5531 1111111 368999999999999999876543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=65.85 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=75.8
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-----CCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-----~~~~sFDlI~~~~~~l~~ 121 (444)
-||++|.|||.++..++++++.--++..++.+..-...-.+....+.+..+|+..+. +.+..||.|+|..-++.+
T Consensus 51 pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~ 130 (194)
T COG3963 51 PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNF 130 (194)
T ss_pred eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccC
Confidence 699999999999999999876666666666666666666666667777777765553 556789999997654554
Q ss_pred cccH-HHHHHHHHhhcCCCeEEEEEc
Q 013393 122 LQRD-GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 122 ~~d~-~~~L~ei~rvLkPGG~lvis~ 146 (444)
.... -++++++...|++||-++.-.
T Consensus 131 P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 131 PMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3333 378999999999999998643
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=65.64 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=72.2
Q ss_pred eEEEECCCcchHHHHHhh--CC-----------ceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccE
Q 013393 47 NVLDVGCGVASFGAYLLS--HD-----------IIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFEL 111 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~-----------V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDl 111 (444)
.|||--||+|.+....+. .. ++|.|+++..++.+..+ +...+. .+.+...|+..+++.++++|.
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccCCCCE
Confidence 899999999998866543 33 45888888777555543 333343 457778899999977889999
Q ss_pred EEeccccccccc---c----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 112 AHCSRCRIDWLQ---R----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 112 I~~~~~~l~~~~---d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
|+|+.=...-.. + ...+++++.++|++...++++... .+.+.++..+|+....
T Consensus 110 IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~-------------~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 110 IVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR-------------ELEKALGLKGWRKRKL 169 (179)
T ss_dssp EEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC-------------CHHHHHTSTTSEEEEE
T ss_pred EEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH-------------HHHHHhcchhhceEEE
Confidence 999631110011 1 136789999999995555554322 3455666666665544
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00034 Score=70.78 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCcc-CCCCCCCc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSF 109 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~-lp~~~~sF 109 (444)
++++||.||+|.|..+.++++. .++.+|+++ ..++.|++. ..++.+...|... +...+++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~-----~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ-----EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 4568999999999999988874 345555554 455555543 2456677777544 33345789
Q ss_pred cEEEecccccccc------ccHHHHHH-HHHhhcCCCeEEEEEcCC
Q 013393 110 ELAHCSRCRIDWL------QRDGILLL-ELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 110 DlI~~~~~~l~~~------~d~~~~L~-ei~rvLkPGG~lvis~p~ 148 (444)
|+|++-. .-+.. ---..+++ .+.+.|+|||.+++...+
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 9999753 11110 01236787 899999999999886443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.3e-05 Score=76.21 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=67.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||++||+|.++..++.. .|+++|+++..+..+..+. +.++. +..+...|...+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~-~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNL-ELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 37999999999999998752 4788888876654444333 33333 34566777655322145799999754
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+ .....++..+.+.+++||.+.++...
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 1 33457888878889999999998543
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.7e-05 Score=73.89 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHH--------------HHHHH-cCC-------------Cc-
Q 013393 45 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQI--------------QFALE-RGI-------------PS- 92 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i--------------~~a~e-~~~-------------~~- 92 (444)
+.++||||||+-.+-..-+. ..|+..|.++....+... +...+ .|. .+
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk 136 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVK 136 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEE
T ss_pred CCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhc
Confidence 45899999999654322222 256677766544332111 11101 011 01
Q ss_pred EEEEecCccC-CCCC-----CCccEEEeccccccccccH---HHHHHHHHhhcCCCeEEEEEcCCCCCCC-------hhh
Q 013393 93 TLGVLGTKRL-PYPS-----RSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEAYAHD-------PEN 156 (444)
Q Consensus 93 ~~~~~d~~~l-p~~~-----~sFDlI~~~~~~l~~~~d~---~~~L~ei~rvLkPGG~lvis~p~~~~~~-------~~~ 156 (444)
.+..+|..+. |+.+ +.||+|++..|+-.-.+|. ..+++++.++|||||.|++...-..... +..
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l 216 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCL 216 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE--
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccc
Confidence 2445665443 2322 3599999999844444454 4789999999999999998642211000 000
Q ss_pred HHHHHHHHHHHHhcCeEEEeee
Q 013393 157 RRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 157 ~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.-.-+.+.+.++++||.+...+
T Consensus 217 ~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 217 PLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -B-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCEEEecc
Confidence 0122467888999999887765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.7e-05 Score=71.54 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=64.8
Q ss_pred CCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCcc-CCC------CCCCc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LPY------PSRSF 109 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~-lp~------~~~sF 109 (444)
++++||+||+++|.-+..++.. .++++|..+.....+...+ ++.| ..+.+..+++.+ ++- ..++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4568999999999888888763 5777877764433333222 2233 356666676433 221 13689
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
|+|+.-. .......++..+.+.|+|||.+++-
T Consensus 158 D~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9999643 2345568888899999999998873
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00082 Score=62.51 Aligned_cols=133 Identities=14% Similarity=0.041 Sum_probs=74.1
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHH
Q 013393 4 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHEN 80 (444)
Q Consensus 4 ~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a 80 (444)
.|-.+..|.++... ...+...+.+-+++.. .+ .+ .++||++||+|.++..++.+ .|+++|.++..+...
T Consensus 17 kg~~l~~p~~~~~r-pt~~~vrea~f~~l~~---~~-~g---~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~ 88 (189)
T TIGR00095 17 GGRLLKLPPGGSTR-PTTRVVRELFFNILRP---EI-QG---AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTL 88 (189)
T ss_pred CCcccCCCCCCCCC-CchHHHHHHHHHHHHH---hc-CC---CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 34555666654322 2223333344444432 11 12 38999999999999999885 577888777555444
Q ss_pred HHHHHHHcCC--CcEEEEecCcc-CC-C-CC-CCccEEEeccccccccccHHHHHHHHH--hhcCCCeEEEEEcC
Q 013393 81 QIQFALERGI--PSTLGVLGTKR-LP-Y-PS-RSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSP 147 (444)
Q Consensus 81 ~i~~a~e~~~--~~~~~~~d~~~-lp-~-~~-~sFDlI~~~~~~l~~~~d~~~~L~ei~--rvLkPGG~lvis~p 147 (444)
+.+ +...+. ++.+...|..+ +. + .. ..||+|+.--- .. ......++..+. .+|+++|.+++..+
T Consensus 89 ~~N-~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP-y~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 89 KEN-LALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP-FF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHH-HHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC-CC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 332 333333 45677777633 22 1 12 24788776431 11 122344555443 47999999888543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00038 Score=67.61 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=46.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCcc---EEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFE---LAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFD---lI~~~~ 116 (444)
.+|||+|||+|.++..++++ .++++|+++..+ +.++++ ..++.+...|+..++++ +|| +|+++.
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~-----~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLA-----EILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHH-----HHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcC
Confidence 48999999999999999884 577777766544 333332 34677888888887765 466 777654
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00018 Score=71.48 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=49.9
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||||||+|.++..+++. .++++|+++..+..+..+++... ..++.+...|+...+++ .||.|+++.
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNl 109 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANV 109 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecC
Confidence 38999999999999999874 57888888766555443333221 24678888887776653 689998764
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00056 Score=59.87 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCeEEEECCCcch-HHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC-CCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~-~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~~ 122 (444)
.++|||||||+|. ++..|++. |.++.++|+++..++.+++.+. .+...|..+-++. -+.+|+|++.+. .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 3589999999995 88888875 2344444555566677776653 4556665443322 357999998874 3
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEE
Q 013393 123 QRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis 145 (444)
++....+.++.+-+. .-+++.
T Consensus 88 ~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 88 RDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHHcC--CCEEEE
Confidence 455667777777554 445553
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00058 Score=67.34 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCccC-CCCCCC
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRS 108 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~l-p~~~~s 108 (444)
+++++||=||-|.|.+++.+++. +++.+||. ++.++.+++. .+.+.+...|..++ .-..++
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID-----~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEID-----PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcC-----HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 34469999999999999999985 45555554 4555666654 13456666665443 222348
Q ss_pred ccEEEeccccccccc----cHHHHHHHHHhhcCCCeEEEEEcCCCCCCC
Q 013393 109 FELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 153 (444)
Q Consensus 109 FDlI~~~~~~l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~~~~~ 153 (444)
||+|++-.. =+--+ .-..+++.+.+.|+++|.++..+-+++...
T Consensus 150 fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 150 FDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 999997531 11101 125899999999999999999865555443
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00064 Score=62.95 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=72.3
Q ss_pred eEEEECCCcchHHHHHh----hCCceEEEcCcccchHHHHHHHHHcCCC-cEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La----~~~V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+++|||+|.|.-+..|+ +..++-+|-...-++ -....+++-+.+ +.+....++. +....+||+|++...
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 79999999997665554 235566655543221 111233344554 7777777777 444678999998762
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.....++.-+...|++||.+++.--. .....-.+.....+..+.+....
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG~------~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKGP------DAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEESS--------HHHHHTHHHHHHCCCEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcCC------ChHHHHHHHHhHHHHhCCEEeee
Confidence 45678999999999999998874221 12223344555666666665544
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00031 Score=65.90 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=70.7
Q ss_pred eecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh--C--CceEEEcCcccchHHHHH
Q 013393 8 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQ 83 (444)
Q Consensus 8 ~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~--~--~V~gvdis~~dis~a~i~ 83 (444)
|.+.-.-..|..+...-...+.+.+ +++. +|||+-||.|.|+..+++ + .|+++|+.|..+... .+
T Consensus 75 f~~D~~kvyfs~rl~~Er~Ri~~~v-------~~~e---~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L-~~ 143 (200)
T PF02475_consen 75 FKVDLSKVYFSPRLSTERRRIANLV-------KPGE---VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL-KE 143 (200)
T ss_dssp EEEETTTS---GGGHHHHHHHHTC---------TT----EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH-HH
T ss_pred EEEccceEEEccccHHHHHHHHhcC-------Ccce---EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH-HH
Confidence 3334445666666655445555443 2333 899999999999999987 2 589999998665444 34
Q ss_pred HHHHcCCC--cEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEE
Q 013393 84 FALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 84 ~a~e~~~~--~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lv 143 (444)
.++.++.. +.....|...+.. .+.||-|+++. .+ .-..+|..+.+++|+||.+-
T Consensus 144 Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 144 NIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHTT-TTTEEEEES-GGG----TT-EEEEEE----TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--hH---HHHHHHHHHHHHhcCCcEEE
Confidence 44444443 4566778776654 68899999765 22 22358888999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0044 Score=62.35 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=71.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.++||+||++|.|+..|+++ .|+++|..+.+. .......+.....|..+...+.+.+|.++|-.. .
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 48999999999999999987 477777544321 112244566666664443322578999998762 4
Q ss_pred cHHHHHHHHHhhcCCC--eEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCe
Q 013393 124 RDGILLLELDRLLRPG--GYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCW 172 (444)
Q Consensus 124 d~~~~L~ei~rvLkPG--G~lvis~p~~~-~~~~~~~~~~~~l~~l~~~~gf 172 (444)
.+.+...-+.+.|..| ..+++.-.-+. .+.++-......+.+.+.+.|.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5667777777777766 35555433322 2223333344456666666664
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=63.83 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=72.8
Q ss_pred CCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCccCCCCCCCcc
Q 013393 42 GGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFE 110 (444)
Q Consensus 42 g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~lp~~~~sFD 110 (444)
.+++++||=+|.|.|..++.+++. +|+-+|++ +..++.+++. .+++.+.. ... .-..++||
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID-----~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fD 141 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD-----EKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYD 141 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECC-----HHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCC
Confidence 356789999999999999999996 35555544 4555555552 23333332 111 11236899
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
+|++-. . ....+++.+.|.|+|||.++.+..+++... .....+.+-+++ .|.
T Consensus 142 VIIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~----~~~~~i~~~l~~-~F~ 193 (262)
T PRK00536 142 LIICLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLLEH----VSMQNALKNMGD-FFS 193 (262)
T ss_pred EEEEcC-C-----CChHHHHHHHHhcCCCcEEEECCCCcccCH----HHHHHHHHHHHh-hCC
Confidence 999653 1 336788999999999999999876665432 223344444444 454
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.41 E-value=7.5e-05 Score=59.86 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=60.7
Q ss_pred EecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccccc---cccccccCCCCCCcccchhhccccccccccCCC
Q 013393 293 MDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 368 (444)
Q Consensus 293 mDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~~~---~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c 368 (444)
+|+.++.|-+++.|.+.+. .+|+-++.. ..+...-++.--. ..+.=-+.++.-+.+||++++.++|..+ .
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS----S
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec----c
Confidence 5888999999999987622 234444432 3344333333211 3333355566667999999999999854 3
Q ss_pred ChhhhhhhhcccccCCcEEEE
Q 013393 369 SFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 369 ~~~~~~~e~drilrp~g~~~~ 389 (444)
+...++-|+-|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 689999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0038 Score=60.44 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHH----c--CCCcE
Q 013393 25 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE----R--GIPST 93 (444)
Q Consensus 25 ~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e----~--~~~~~ 93 (444)
+..+..++. +.||. +||+-|+|+|+++.++++. .+...|+ ++...+.|++ . +.++.
T Consensus 94 ia~I~~~L~-----i~PGs---vV~EsGTGSGSlShaiaraV~ptGhl~tfef-----H~~Ra~ka~eeFr~hgi~~~vt 160 (314)
T KOG2915|consen 94 IAMILSMLE-----IRPGS---VVLESGTGSGSLSHAIARAVAPTGHLYTFEF-----HETRAEKALEEFREHGIGDNVT 160 (314)
T ss_pred HHHHHHHhc-----CCCCC---EEEecCCCcchHHHHHHHhhCcCcceEEEEe-----cHHHHHHHHHHHHHhCCCcceE
Confidence 445556664 45666 9999999999999999874 4566666 4444444433 2 55778
Q ss_pred EEEecCccCCCC--CCCccEEEeccccccccccHHHHHHHHHhhcCCCe-EEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 013393 94 LGVLGTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSM 170 (444)
Q Consensus 94 ~~~~d~~~lp~~--~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG-~lvis~p~~~~~~~~~~~~~~~l~~l~~~~ 170 (444)
+..-|....-|. +..+|.|+.-. +.+..++.-++.+||.+| +|+--.|. .++-+.-.+++.+.
T Consensus 161 ~~hrDVc~~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csFSPC--------IEQvqrtce~l~~~ 226 (314)
T KOG2915|consen 161 VTHRDVCGSGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSFSPC--------IEQVQRTCEALRSL 226 (314)
T ss_pred EEEeecccCCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEeccHH--------HHHHHHHHHHHHhC
Confidence 888887776554 57799997433 555677888888999877 55543333 23334556677888
Q ss_pred CeEEEe
Q 013393 171 CWKIVS 176 (444)
Q Consensus 171 gf~~v~ 176 (444)
||..+.
T Consensus 227 gf~~i~ 232 (314)
T KOG2915|consen 227 GFIEIE 232 (314)
T ss_pred CCceEE
Confidence 996544
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=66.32 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=71.5
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccC-C-CC--------------CC
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------SR 107 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l-p-~~--------------~~ 107 (444)
+|||++||+|.++..+++. .|+++|+++.++..+.. .+...+. ++.+...|+.+. + +. ..
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 6999999999999988873 68899888877655553 3333444 577887776442 1 10 12
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+||+|+.--- ...-...+++.+.+ |++.++++..+ ...-+.+..+.+ ||++.....
T Consensus 288 ~~D~v~lDPP---R~G~~~~~l~~l~~---~~~ivyvSC~p--------~tlarDl~~L~~--gY~l~~v~~ 343 (362)
T PRK05031 288 NFSTIFVDPP---RAGLDDETLKLVQA---YERILYISCNP--------ETLCENLETLSQ--THKVERFAL 343 (362)
T ss_pred CCCEEEECCC---CCCCcHHHHHHHHc---cCCEEEEEeCH--------HHHHHHHHHHcC--CcEEEEEEE
Confidence 5899986431 11112345555544 78888887543 112234555543 887765543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00051 Score=70.50 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=85.0
Q ss_pred cCC-eeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccc
Q 013393 4 NGE-KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDV 77 (444)
Q Consensus 4 ~g~-~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~di 77 (444)
||. .|.+|..++.|.+-....-+.+.-.+-........+...-+|||+.||+|..+..++.+ .|++.|+++..+
T Consensus 3 EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av 82 (374)
T TIGR00308 3 EGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAV 82 (374)
T ss_pred cceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH
Confidence 444 56667666677777766655543211000000011111237999999999999998864 478888888665
Q ss_pred hHHHHHHHHHcCC-CcEEEEecCccCC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 78 HENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 78 s~a~i~~a~e~~~-~~~~~~~d~~~lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.....+ ++.++. ++.+...|+..+- ...+.||+|..-- + ..+..++..+.+.+++||.+.++.
T Consensus 83 ~~i~~N-~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP----f-Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 83 ESIKNN-VEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP----F-GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred HHHHHH-HHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC----C-CCcHHHHHHHHHhcccCCEEEEEe
Confidence 444433 333333 3566666655432 2235799998643 2 344579999999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0026 Score=62.65 Aligned_cols=127 Identities=20% Similarity=0.110 Sum_probs=70.2
Q ss_pred CCCCeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHc---CCCcEEE--Eec--CccCCCCCCCccEEEe
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---GIPSTLG--VLG--TKRLPYPSRSFELAHC 114 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~---~~~~~~~--~~d--~~~lp~~~~sFDlI~~ 114 (444)
-.+++|||+|||+|...-.+.+. . ...++...|.++.+.+.++.. ..+.... ... ....++. ..|+|++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEE
Confidence 44568999999999654433331 0 112333344455555554432 1111100 001 1112232 3499999
Q ss_pred ccccccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 115 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 115 ~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++.+.+ +++. ..+++.+.+.+.+ ++++.+|.. +.+.+.-.++.+.+.+.|+.++..-.
T Consensus 109 s~~L~E-L~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~~v~APCp 168 (274)
T PF09243_consen 109 SYVLNE-LPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGAHVVAPCP 168 (274)
T ss_pred ehhhhc-CCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCCceECCCc
Confidence 995444 4442 2566666666655 888887763 44555556778888888887776543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0016 Score=59.42 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=79.0
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
+.-+||||||+|..+..|++. -..+.|++|... ++..+.|+.++..+.....|...- ...++.|+++.+.-.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 447999999999999888874 256788888644 555567777776666666663321 1237888888763111
Q ss_pred c--------------cc--ccH----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 120 D--------------WL--QRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 120 ~--------------~~--~d~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
. |. .+. ++++.++-.+|.|.|.|++..-..+ .-.++..+++..||...
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------KPKEILKILEKKGYGVR 189 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------CHHHHHHHHhhccccee
Confidence 1 11 121 3678888899999999998643321 12356667888888543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=66.84 Aligned_cols=106 Identities=19% Similarity=0.097 Sum_probs=73.6
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCcc-CC---CCCCCccEEEec
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKR-LP---YPSRSFELAHCS 115 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~-lp---~~~~sFDlI~~~ 115 (444)
.++|||+=|=||.++.+.+.. .|+++|+|...+.-+..++..+. .....+.+.|+-+ +. -...+||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 348999999999999988873 78888888776655554444332 2245777887433 22 124589999983
Q ss_pred c--------ccccccccHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 R--------CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 ~--------~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
- ....-..+...++..+.++|+|||.+++++....
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 2 0111134566899999999999999999876543
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00071 Score=69.04 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=69.5
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccC-C-------C---C-----CC
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-------Y---P-----SR 107 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~l-p-------~---~-----~~ 107 (444)
+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...+. ++.+...|..++ + + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 6999999999999988873 68888888877655553 3333444 577777776542 1 1 0 12
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.||+|+.--- -..-...++..+. +|++.++++..+ ...-+.+..+.+ +|++....
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l~---~~~~ivYvsC~p--------~tlaRDl~~L~~--~Y~l~~v~ 333 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLVQ---AYERILYISCNP--------ETLKANLEQLSE--THRVERFA 333 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHHH---cCCcEEEEEcCH--------HHHHHHHHHHhc--CcEEEEEE
Confidence 3799886431 1111234555544 478999887543 122335555542 37665554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=65.21 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=65.5
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
....+|+|.|.|..+..++.. .+-++++....+.+++.+.+ ..+....+|.-+- .|. -|+|++-.++.||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P~--~daI~mkWiLhdw- 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TPK--GDAIWMKWILHDW- 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceeccccccc-CCC--cCeEEEEeecccC-
Confidence 568999999999999988873 45566665544433332222 3355555553222 332 4699999976666
Q ss_pred ccH--HHHHHHHHhhcCCCeEEEEEcC
Q 013393 123 QRD--GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 123 ~d~--~~~L~ei~rvLkPGG~lvis~p 147 (444)
.|. .++|+++...|+|||.+++.+.
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 444 4999999999999999999654
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00084 Score=65.09 Aligned_cols=125 Identities=16% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCccC-CCCCC-CccEEE
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRL-PYPSR-SFELAH 113 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~l-p~~~~-sFDlI~ 113 (444)
++++||=||-|.|..+..+++. .++.+|+++.-+.-+..-+.... ..++.+...|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4669999999999999999874 46666666543322222122211 34677888875442 12233 899999
Q ss_pred ecccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 114 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 114 ~~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
.-.. -+.... -..+++.+.+.|+|||.+++....++.. ......+.+.+++.+..
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~----~~~~~~i~~tl~~~F~~ 214 (246)
T PF01564_consen 156 VDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH----PELFKSILKTLRSVFPQ 214 (246)
T ss_dssp EESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT----HHHHHHHHHHHHTTSSE
T ss_pred EeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc----hHHHHHHHHHHHHhCCc
Confidence 7432 121111 2589999999999999999976443321 23345566666666653
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0028 Score=59.92 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=84.1
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-C--CCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y--PSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-~--~~~sF 109 (444)
.+++|. +||-+|+.+|....++++ ..|.++++++... ...++.|++| .|+.-...|+..-. | --+..
T Consensus 70 ~ik~gs---kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R-~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGS---KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKR-PNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT----EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHS-TTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCCCC---EEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccC-CceeeeeccCCChHHhhcccccc
Confidence 455665 899999999988888876 3688999999654 4444666665 45555566654311 1 13479
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-CChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+|++-- ......+.++.++...||+||.++++...... -.......|.+-.+.+++.+|+..+.-
T Consensus 145 DvI~~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i 211 (229)
T PF01269_consen 145 DVIFQDV---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQI 211 (229)
T ss_dssp EEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cEEEecC---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEe
Confidence 9999764 22233457788888999999999986432110 112233567777777787889887654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00025 Score=63.43 Aligned_cols=74 Identities=18% Similarity=0.397 Sum_probs=56.3
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec-ceeEe
Q 013393 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD-QTVIW 184 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~-~~~~w 184 (444)
..+||.|+|+.|+ -+.+....++.-+.+.|+|.|..++..|.- .+....+.+..+..||.+...++ +..+|
T Consensus 101 q~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR-------g~sL~kF~de~~~~gf~v~l~enyde~iw 172 (201)
T KOG3201|consen 101 QHTFDIILAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR-------GQSLQKFLDEVGTVGFTVCLEENYDEAIW 172 (201)
T ss_pred hCcccEEEeccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc-------cchHHHHHHHHHhceeEEEecccHhHHHH
Confidence 4589999999984 445666789999999999999988876652 13355778888999998876554 44577
Q ss_pred ecc
Q 013393 185 AKP 187 (444)
Q Consensus 185 ~k~ 187 (444)
++.
T Consensus 173 qrh 175 (201)
T KOG3201|consen 173 QRH 175 (201)
T ss_pred HHH
Confidence 754
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00063 Score=62.39 Aligned_cols=91 Identities=25% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEec---------Ccc-CCCCCCCc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG---------TKR-LPYPSRSF 109 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d---------~~~-lp~~~~sF 109 (444)
..+|||+||++|.|+..++++ .|+|+|+.+.+.. ..+.....| ... ++-..+.|
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccCc
Confidence 458999999999999999875 4788988876211 111111111 111 11112689
Q ss_pred cEEEecccccccc----ccH-------HHHHHHHHhhcCCCeEEEEEcC
Q 013393 110 ELAHCSRCRIDWL----QRD-------GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 110 DlI~~~~~~l~~~----~d~-------~~~L~ei~rvLkPGG~lvis~p 147 (444)
|+|+|-.+ .... .+. ...+.-+...|+|||.+++-..
T Consensus 93 dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 93 DLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred ceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 99998541 2211 111 1345555678999998887543
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0077 Score=57.01 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=76.5
Q ss_pred CCeEEEECCCcchHHHHHh----hCCceEEEcCcccchHHHHH-HHHHcCCC-cEEEEecCccCCCCCCC-ccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQ-FALERGIP-STLGVLGTKRLPYPSRS-FELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La----~~~V~gvdis~~dis~a~i~-~a~e~~~~-~~~~~~d~~~lp~~~~s-FDlI~~~~~ 117 (444)
..+++|||+|.|.-+..|+ +.+++-+|-...- .+-++ ...+-+.+ +.+....++.+.-. .. ||+|.|...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk--~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK--IAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH--HHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeehc
Confidence 4589999999997776655 2344444333321 12222 23344655 77777777776532 23 999998752
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.+...++.=+...+|+||.++.- +.........+.+......++.+....
T Consensus 145 -----a~L~~l~e~~~pllk~~g~~~~~------k~~~~~~e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 145 -----ASLNVLLELCLPLLKVGGGFLAY------KGLAGKDELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred -----cchHHHHHHHHHhcccCCcchhh------hHHhhhhhHHHHHHHHHhhcCcEEEEE
Confidence 56677888889999999988641 223334456677778888787766554
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.004 Score=62.58 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=61.4
Q ss_pred eEEEECCCcchHHHHHhhC--------CceEEEcCcccchHHHHHHHHHcCCCcEE--EEecCcc----CCC--CCCCcc
Q 013393 47 NVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKR----LPY--PSRSFE 110 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--------~V~gvdis~~dis~a~i~~a~e~~~~~~~--~~~d~~~----lp~--~~~sFD 110 (444)
+++|+|||+|.=+..|+++ .++++|||...+..+..+......+.+.+ ..+|..+ ++- ......
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r 158 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPT 158 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCcc
Confidence 7999999999766655441 25566666655544444333222233443 4555433 221 123467
Q ss_pred EEEeccccccccccH--HHHHHHHHh-hcCCCeEEEEEc
Q 013393 111 LAHCSRCRIDWLQRD--GILLLELDR-LLRPGGYFVYSS 146 (444)
Q Consensus 111 lI~~~~~~l~~~~d~--~~~L~ei~r-vLkPGG~lvis~ 146 (444)
+++.-.+.+...+.. ..+|+++.+ .|+|||.|++..
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 777765455544433 378999999 999999999965
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0013 Score=65.23 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=57.1
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+.|||||||+|.++...+++ .|.+++.+.. . +-..+....+.. .+.++.+..++...| ++.|+|++-.+ .
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M-A-qyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPM-G 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM-A-QYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPM-G 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhHH-H-HHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccc-h
Confidence 458999999999988777663 6777765531 1 111122222222 233444456666666 67999997542 2
Q ss_pred cccccH--HHHHHHHHhhcCCCeEEEE
Q 013393 120 DWLQRD--GILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 120 ~~~~d~--~~~L~ei~rvLkPGG~lvi 144 (444)
..+-+. -+..-.+.+.|||.|..+=
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 222222 2334455699999998873
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0017 Score=64.78 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh-----------CCceEEEcCcccchHHHHHHHHHc--
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALER-- 88 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~-----------~~V~gvdis~~dis~a~i~~a~e~-- 88 (444)
....+.+.+++.. ....+|||-.||+|.|...+.+ ..+.|.|+.+....-+..+.....
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 3444556666632 2233799999999998877654 256777777655544444333221
Q ss_pred CCCcEEEEecCccCCC-C-CCCccEEEecccccc--cc------------------ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 89 GIPSTLGVLGTKRLPY-P-SRSFELAHCSRCRID--WL------------------QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 89 ~~~~~~~~~d~~~lp~-~-~~sFDlI~~~~~~l~--~~------------------~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.....+...|....+. . .+.||+|+++.-... |. ...-.++..+.+.|++||++.+..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1122455666443332 2 478999999631111 00 011258899999999999988877
Q ss_pred CC
Q 013393 147 PE 148 (444)
Q Consensus 147 p~ 148 (444)
|.
T Consensus 184 p~ 185 (311)
T PF02384_consen 184 PN 185 (311)
T ss_dssp EH
T ss_pred cc
Confidence 65
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0027 Score=66.07 Aligned_cols=98 Identities=22% Similarity=0.407 Sum_probs=72.6
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 122 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~- 122 (444)
++|-+|||.-.+...+.+. .|+.+|+|+..+...++..+ ....-..+...|...+.|++++||.|+--.. ++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGt-lDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGT-LDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCc-ccccc
Confidence 7999999999999888874 67777777776655554444 2233456778899999999999999998653 3332
Q ss_pred ccH---------HHHHHHHHhhcCCCeEEEEEc
Q 013393 123 QRD---------GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 123 ~d~---------~~~L~ei~rvLkPGG~lvis~ 146 (444)
.+. ...+.++.|+|+|||+++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 221 256789999999999977543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0084 Score=62.72 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=77.3
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC---CCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~---~~sFDlI~~~~~~l~ 120 (444)
.++||+=||.|.|+..|+++ .|+|+++++..+..++.+.+.....++.|...+.+++.-. ...||.|+..--
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP--- 371 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP--- 371 (432)
T ss_pred CEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC---
Confidence 38999999999999999974 8999999998887666544444445688888887775422 357899986420
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
-.--...+++.+. -++|-..+++|..+ ....+=...+.+.|+++..
T Consensus 372 R~G~~~~~lk~l~-~~~p~~IvYVSCNP---------~TlaRDl~~L~~~gy~i~~ 417 (432)
T COG2265 372 RAGADREVLKQLA-KLKPKRIVYVSCNP---------ATLARDLAILASTGYEIER 417 (432)
T ss_pred CCCCCHHHHHHHH-hcCCCcEEEEeCCH---------HHHHHHHHHHHhCCeEEEE
Confidence 0001124555554 46788899997654 2222223445556765443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0065 Score=56.93 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=61.0
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------CCCCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~~~sFDlI 112 (444)
.+|+|+|+-.|+|+..+++. .|+++|+.|.+.. .++.+...|+..-+ +....+|+|
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 38999999999999999873 3899999998652 23566666654422 334457999
Q ss_pred Eeccc---cccccccH-------HHHHHHHHhhcCCCeEEEEEc
Q 013393 113 HCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 113 ~~~~~---~l~~~~d~-------~~~L~ei~rvLkPGG~lvis~ 146 (444)
.|-.. ..++..|. ..++.-+..+|+|||.|++..
T Consensus 116 ~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 116 LSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 97431 12222222 245666677999999999843
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00043 Score=61.43 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=53.4
Q ss_pred CccCCCCCCCccEEEeccccccccc--cHHHHHHHHHhhcCCCeEEEEEcCCCCCC-----------------Chhh--H
Q 013393 99 TKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAH-----------------DPEN--R 157 (444)
Q Consensus 99 ~~~lp~~~~sFDlI~~~~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~~~~~-----------------~~~~--~ 157 (444)
....+|.+++.|+|+|.+ +++|.. ....++++++|+|||||++-++.|..... .+.. .
T Consensus 38 s~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v 116 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIV 116 (185)
T ss_pred hhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHH
Confidence 455789999999999998 566643 33489999999999999999998874311 1211 1
Q ss_pred HHHHHHHHHHHhcCeEE
Q 013393 158 RIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 158 ~~~~~l~~l~~~~gf~~ 174 (444)
...+.+.+.+.+.||.+
T Consensus 117 ~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 117 KTMRMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHHHHhhhhee
Confidence 24456677777777743
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=65.25 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=66.9
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCcc-CC-C-CCCCccEEEecc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKR-LP-Y-PSRSFELAHCSR- 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~-lp-~-~~~sFDlI~~~~- 116 (444)
++|||+=|=||.|+.+.+.. .|+.+|.|...+..+..+.+... .....+...|+.+ +. . ..++||+|++--
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPP 204 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPP 204 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--S
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCC
Confidence 48999999999999987764 57788887776666665444433 1346777777533 21 1 246899999832
Q ss_pred ----ccccccccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 117 ----CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 117 ----~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
....-..+...++..+.++|+|||.+++++.+.
T Consensus 205 sF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 205 SFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp SEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 111123466789999999999999998766543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0043 Score=58.16 Aligned_cols=109 Identities=18% Similarity=0.235 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCc---eEEEcCcccchHHHHHHHHHcCC----CcEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI---IAMSLAPNDVHENQIQFALERGI----PSTL 94 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V---~gvdis~~dis~a~i~~a~e~~~----~~~~ 94 (444)
..+.+.+++.+. .+.+|||.||-|-|.....+.++.. +.++ .++...+..++.+. ++.+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE-----~hp~V~krmr~~gw~ek~nVii 153 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIE-----AHPDVLKRMRDWGWREKENVII 153 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEEEe-----cCHHHHHHHHhcccccccceEE
Confidence 345555555554 2334899999999988887776532 2222 33444444444432 3443
Q ss_pred EEecCcc-CC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 95 GVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 95 ~~~d~~~-lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
...-.++ ++ .+++.||-|+--. .-++-+|...+.+.+.|+|||+|.|-+.
T Consensus 154 l~g~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 154 LEGRWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EecchHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 3332222 22 5688999999654 3355588889999999999999999873
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=59.89 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=76.0
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 79 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~ 79 (444)
+.|..+..|.+. ......++-.+.+-+++... .+ .+ .++||+-||||.++...+.+ .|+.+|.++..+..
T Consensus 8 ~kgr~l~~p~~~-~~RPT~drvrealFniL~~~--~~-~g---~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~ 80 (183)
T PF03602_consen 8 YKGRKLKTPKGD-NTRPTTDRVREALFNILQPR--NL-EG---ARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKI 80 (183)
T ss_dssp TTT-EEE-TT---TS-SSSHHHHHHHHHHHHCH---H-TT----EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHH
T ss_pred cCCCEecCCCCC-CcCCCcHHHHHHHHHHhccc--cc-CC---CeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHH
Confidence 456778888753 33333455555566666532 01 12 38999999999999988875 56777776654432
Q ss_pred HHHHHHHHcCC--CcEEEEecCcc-CC---CCCCCccEEEecccccccccc--HHHHHHHHH--hhcCCCeEEEEEcCC
Q 013393 80 NQIQFALERGI--PSTLGVLGTKR-LP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSPE 148 (444)
Q Consensus 80 a~i~~a~e~~~--~~~~~~~d~~~-lp---~~~~sFDlI~~~~~~l~~~~d--~~~~L~ei~--rvLkPGG~lvis~p~ 148 (444)
.. +..+..+. ...+...|... ++ ....+||+|++-- +|... ...++..+. .+|+++|.+++....
T Consensus 81 i~-~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 81 IK-KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HH-HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HH-HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 22 22222233 35566666322 22 2467899999753 33333 267777776 799999999986543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0043 Score=66.72 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=62.2
Q ss_pred CCeEEEECCCcchHHHHHhhCC-------ceEEEcCcccchHHHHHHHHHc----C-CCcEEEEecCccC-----CCCCC
Q 013393 45 IRNVLDVGCGVASFGAYLLSHD-------IIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRL-----PYPSR 107 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~-------V~gvdis~~dis~a~i~~a~e~----~-~~~~~~~~d~~~l-----p~~~~ 107 (444)
..+|||.|||+|.+...+++.. ....++.+.|+++..+..++.+ + ....+...|.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 3489999999999988776521 1234555666666665555443 1 2233333332111 11125
Q ss_pred CccEEEeccccc--ccc-------------------------------------------ccHHHHH-HHHHhhcCCCeE
Q 013393 108 SFELAHCSRCRI--DWL-------------------------------------------QRDGILL-LELDRLLRPGGY 141 (444)
Q Consensus 108 sFDlI~~~~~~l--~~~-------------------------------------------~d~~~~L-~ei~rvLkPGG~ 141 (444)
.||+|+++-=.. ... .....++ ..+.+.|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 799999973111 110 0011234 457899999999
Q ss_pred EEEEcCCCCCC
Q 013393 142 FVYSSPEAYAH 152 (444)
Q Consensus 142 lvis~p~~~~~ 152 (444)
+.+..|..+..
T Consensus 192 ~~~I~P~s~l~ 202 (524)
T TIGR02987 192 VSIISPASWLG 202 (524)
T ss_pred EEEEEChHHhc
Confidence 99988876543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0034 Score=64.18 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----C-ceEEEcCcccchHHHHHHHHHcCCC-cEEEEe
Q 013393 25 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----D-IIAMSLAPNDVHENQIQFALERGIP-STLGVL 97 (444)
Q Consensus 25 ~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~-V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~ 97 (444)
++...+++....-+.++|. +|||+.++.|.=+.++++. . |++.|+++.-+. ...+..+..|.. +.....
T Consensus 140 vQd~sS~l~a~~L~p~pge---~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~ 215 (355)
T COG0144 140 VQDEASQLPALVLDPKPGE---RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNK 215 (355)
T ss_pred EcCHHHHHHHHHcCCCCcC---EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEec
Confidence 3344455544333445554 8999999999877777663 1 467777664332 222333333554 456666
Q ss_pred cCccCC--CC-CCCccEEEe----cc-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 98 GTKRLP--YP-SRSFELAHC----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 98 d~~~lp--~~-~~sFDlI~~----~~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
|...++ .+ .++||.|.+ +. .++.-.++ ..++|..+.++|||||.++.++=+..
T Consensus 216 d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 216 DARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 765554 22 235999996 21 11211111 12689999999999999999875543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0033 Score=58.40 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccC-CCceEEEeccccCC-Cchh----HHhhccc--ccccc
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLK----IIYDRGL--IGTVH 338 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l~----~~~~rg~--~~~~~ 338 (444)
..|++.+-.-.... +.+.. -..++|+.++.|.+|.++.. .|- ..|+-++.. .-+. .+-+.|+ |-+++
T Consensus 27 ~~~~~~~~d~l~l~-~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIA-PYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHH-hhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 36776663222222 22443 35799999999998887653 232 356666653 3232 2333444 45566
Q ss_pred ccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEeccccc
Q 013393 339 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 418 (444)
Q Consensus 339 ~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~ 418 (444)
.-.+.+.. +.+||+|-+..+ .++.+++-++-|.|||||.+++-+......++..+++.+.|+..... +-+
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 171 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVI-ELT 171 (187)
T ss_pred ccHhhCCC-CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeE-EEe
Confidence 66666665 779999987642 34788999999999999999999999999999999999999965321 111
Q ss_pred cCCCCCCCceEEEEEec
Q 013393 419 IDALSSSEERVLIAKKK 435 (444)
Q Consensus 419 ~~~~~~~~~~~l~~~k~ 435 (444)
-. .-+++..+.|.+|+
T Consensus 172 ~~-~~~~~~~~~~~~~~ 187 (187)
T PRK00107 172 LP-GLDGERHLVIIRKK 187 (187)
T ss_pred cC-CCCCcEEEEEEecC
Confidence 11 12234567777774
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0068 Score=59.78 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=54.2
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhH--------HHHHHHHHHHHhcCeEEEeee
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR--------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~--------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++||+|+..+ .+.-..+.-.++..+..+|||||+++=..|-.|...++.. -..+++..+++..||+++.++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699998776 4555556668999999999999999977766554333211 245688999999999998877
Q ss_pred c
Q 013393 179 D 179 (444)
Q Consensus 179 ~ 179 (444)
.
T Consensus 337 ~ 337 (369)
T KOG2798|consen 337 G 337 (369)
T ss_pred e
Confidence 4
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0018 Score=57.03 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=58.6
Q ss_pred HHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHh--h-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC
Q 013393 27 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 103 (444)
Q Consensus 27 ~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La--~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp 103 (444)
.+..++.-..+++.. ++++|+|||.|-+..... + ..|+|+|+.|..+.... +.|.+...++.+.++|...+.
T Consensus 35 sM~~~Ih~TygdiEg----kkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle 109 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEG----KKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLE 109 (185)
T ss_pred HHHHHHHhhhccccC----cchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchh
Confidence 444555444444433 379999999997664332 2 47899999886653333 455666677788888888877
Q ss_pred CCCCCccEEEecc
Q 013393 104 YPSRSFELAHCSR 116 (444)
Q Consensus 104 ~~~~sFDlI~~~~ 116 (444)
+..+.||.++.+.
T Consensus 110 ~~~g~fDtaviNp 122 (185)
T KOG3420|consen 110 LKGGIFDTAVINP 122 (185)
T ss_pred ccCCeEeeEEecC
Confidence 7778899999864
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00034 Score=61.95 Aligned_cols=96 Identities=24% Similarity=0.431 Sum_probs=66.9
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccccccccccccCCCCCCcccchhhcccccccccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..--+|+|+.++.|.++..|.+.+. +|+-++.. ..+.. +-....-++-.++ .--+++||+|.+.++|..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhcc-
Confidence 4455999999999999999987665 45544432 22222 2222222211122 12368999999999999554
Q ss_pred CCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4899999999999999999998764
|
... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0037 Score=57.81 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=62.5
Q ss_pred CCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+.++|||+|+|+|..+..-+.. .|+..|+.| ....+..-.+..++..+.+...|... .+..||+|+.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P-~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDP-WLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCCh-HHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 3469999999999877766553 567777775 33333333455567666666665443 4578999999884333
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+ ..-.+++. +.+.|+..|.-++...+
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 2 33446666 66666666655554433
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0025 Score=61.70 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=52.7
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEe
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHC 114 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~ 114 (444)
.+++.. .||+||.|||.++..|++ +.|+++++++.++.+-.......- .....+..+|....++| .||.+++
T Consensus 55 ~~k~tD---~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTD---VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVS 129 (315)
T ss_pred CCCCCC---EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeec
Confidence 444544 999999999999999988 479999999988765553332111 12356677787776655 6999997
Q ss_pred cc
Q 013393 115 SR 116 (444)
Q Consensus 115 ~~ 116 (444)
+.
T Consensus 130 Nl 131 (315)
T KOG0820|consen 130 NL 131 (315)
T ss_pred cC
Confidence 53
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0059 Score=59.35 Aligned_cols=92 Identities=17% Similarity=0.149 Sum_probs=60.8
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
|++|-..-.- ++.+.+.... .+ ..+|||||+|.|.++..|+++ .|+++++++..+......++ ...+
T Consensus 9 GQnFL~d~~v-~~kIv~~a~~-----~~---~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n 77 (259)
T COG0030 9 GQNFLIDKNV-IDKIVEAANI-----SP---GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDN 77 (259)
T ss_pred ccccccCHHH-HHHHHHhcCC-----CC---CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccc
Confidence 5555554443 4555555432 22 338999999999999999985 68888887754322221111 2456
Q ss_pred cEEEEecCccCCCCCC-CccEEEecc
Q 013393 92 STLGVLGTKRLPYPSR-SFELAHCSR 116 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~~-sFDlI~~~~ 116 (444)
..+...|+...++++- .++.|+++.
T Consensus 78 ~~vi~~DaLk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 78 LTVINGDALKFDFPSLAQPYKVVANL 103 (259)
T ss_pred eEEEeCchhcCcchhhcCCCEEEEcC
Confidence 7888889888888743 688998763
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.018 Score=58.18 Aligned_cols=141 Identities=14% Similarity=0.083 Sum_probs=91.7
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 90 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~ 90 (444)
-.+|..+...=...++++.. +|. +|||.=||.|-|+..++.. .|+++|+.|..+.-.+. .++.++.
T Consensus 168 Kv~Fsprl~~ER~Rva~~v~-------~GE---~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~e-Ni~LN~v 236 (341)
T COG2520 168 KVYFSPRLSTERARVAELVK-------EGE---TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKE-NIRLNKV 236 (341)
T ss_pred HeEECCCchHHHHHHHhhhc-------CCC---EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHH-HHHhcCc
Confidence 34555555433334444442 233 8999999999999998874 38899999876644443 3333433
Q ss_pred C--cEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHH
Q 013393 91 P--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 168 (444)
Q Consensus 91 ~--~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~ 168 (444)
. +....+|....+...+.||-|++.. ..+-..++..+.+.+++||.+-+.......... ......+...+.
T Consensus 237 ~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~--~~~~~~i~~~~~ 309 (341)
T COG2520 237 EGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIE--ERPEKRIKSAAR 309 (341)
T ss_pred cceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEeccchhhcc--cchHHHHHHHHh
Confidence 2 5567888877765558899999765 234457888999999999999885433211110 013456777777
Q ss_pred hcCe
Q 013393 169 SMCW 172 (444)
Q Consensus 169 ~~gf 172 (444)
+.|.
T Consensus 310 ~~~~ 313 (341)
T COG2520 310 KGGY 313 (341)
T ss_pred hccC
Confidence 7765
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.007 Score=57.05 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=51.4
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHH--HHHHHH----cCC---CcEEEEecCccCCCC---CCCcc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQ--IQFALE----RGI---PSTLGVLGTKRLPYP---SRSFE 110 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~--i~~a~e----~~~---~~~~~~~d~~~lp~~---~~sFD 110 (444)
..+|+|||.|......+- +..+|+++.+.-...+. .+..++ .+. ++.+..+|+.+.++. -...|
T Consensus 45 vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~Ad 124 (205)
T PF08123_consen 45 VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDAD 124 (205)
T ss_dssp EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-S
T ss_pred EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcCCC
Confidence 899999999976554432 24789999875332222 111111 122 334444554332211 03469
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+|+++.. .+.++....|.+...-||||-+++-
T Consensus 125 vVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 125 VVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred EEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 9999873 3446677778888899999988763
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.023 Score=53.93 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC-----CCCCCccE
Q 013393 45 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-----~~~~sFDl 111 (444)
+++.||||.=||.-+..++. ..|+++|+.+....-. .++.+..+. .+.+.+..+.+ ++ .+.++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 34899999989865555543 3788998887654433 233333343 34555554322 21 35689999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
++. =++-.+...++.++.++||+||.+++-
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 983 445556668999999999999999983
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.076 Score=50.75 Aligned_cols=125 Identities=17% Similarity=0.256 Sum_probs=82.0
Q ss_pred CCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEE-EEecCccCC---CCCCCccEEEecc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLP---YPSRSFELAHCSR 116 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~-~~~d~~~lp---~~~~sFDlI~~~~ 116 (444)
+.+++||+|+-||.|+..++++ .|+++|+.-.+++....+ .+.+.. ...++..+. +. +..|+|+|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 3458999999999999999985 688998887766555422 232222 222233322 22 3678999865
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEcCCCC------------CCCh-hhHHHHHHHHHHHHhcCeEEEeee
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY------------AHDP-ENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~------------~~~~-~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+ + -.....|..+..+++|+|.++.-..+-+ -+++ .....-..+.+.++..||.+....
T Consensus 153 S---F-ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 153 S---F-ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred e---h-hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 4 3 2456799999999999998886443322 1122 223355688888999999876553
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.07 Score=49.36 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=79.0
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 79 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~ 79 (444)
+.|..+.+|.+ .......++-.+.+=+++... . -...++||+=+|+|.++...+.+ .++.+|.+......
T Consensus 9 ~kgr~L~~p~~-~~~RPT~drVREalFNil~~~--~----i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~ 81 (187)
T COG0742 9 YKGRKLKTPDG-PGTRPTTDRVREALFNILAPD--E----IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI 81 (187)
T ss_pred ccCCcccCCCC-CCcCCCchHHHHHHHHhcccc--c----cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence 45677888875 334444455555555666421 1 22338999999999999999886 46666666543322
Q ss_pred HHHHHHHHcC--CCcEEEEecCccC-CCCCC--CccEEEeccccccc-cccHHHHHHH--HHhhcCCCeEEEEEcCC
Q 013393 80 NQIQFALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRIDW-LQRDGILLLE--LDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 80 a~i~~a~e~~--~~~~~~~~d~~~l-p~~~~--sFDlI~~~~~~l~~-~~d~~~~L~e--i~rvLkPGG~lvis~p~ 148 (444)
... ..+..+ .+..+...|+... +.... +||+|+.-- -.+. .-+....+.. -...|+|+|.+++....
T Consensus 82 l~~-N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 82 LKE-NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHH-HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 222 222223 4566666665532 22223 499999743 1221 1111222333 45789999999996443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.012 Score=56.86 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=66.0
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc-cccccccccCCCCCCcccchhhcccccc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
+.......|+|+.++.|.++..|.... -.|+=+|- +.-+...-+++- +...+.-.|.++..+.+||+|-++..+.
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 344456789999999999988886542 13444443 344444444431 1222222355565567999998776554
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.. -+...++-||-|+|+|||.+++-
T Consensus 115 -~~---~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 115 -WC---GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred -hc---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 21 25789999999999999999985
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.03 Score=57.62 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCeEEEECCCcchHHHHHhh-------------------CCceEEEcCcccchHHHHHHHHH-------------cCCCc
Q 013393 45 IRNVLDVGCGVASFGAYLLS-------------------HDIIAMSLAPNDVHENQIQFALE-------------RGIPS 92 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-------------------~~V~gvdis~~dis~a~i~~a~e-------------~~~~~ 92 (444)
.-+|+|+|||+|..+..+.. -.|.--|+-..|..........- .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 34799999999976655432 12333455555544333222110 11111
Q ss_pred EEEEe---cCccCCCCCCCccEEEeccccccccc
Q 013393 93 TLGVL---GTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 93 ~~~~~---d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.|..+ .+..--||+++.+++||+.+ +||+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecc-ceecc
Confidence 22211 12333478999999999995 89964
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.065 Score=50.52 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=74.6
Q ss_pred EEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecC-ccCCCCCCCccEEEeccccccc
Q 013393 48 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 48 VLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~-~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
|.||||--|.++.+|++. .++++|+++.-+..+....++.. ...+.+...|. ..++ +.+..|.|+.+.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG-- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG-- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCH--
Confidence 689999999999999985 57888888876666554444332 23456666663 3343 223378888766322
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.-....|.+....++..-.|+++... ....+++.+.+.||.++.+.-
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP~~----------~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQPNT----------HAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeCCC----------ChHHHHHHHHHCCCEEEEeEE
Confidence 22346777777788877788886332 245788999999999887753
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.022 Score=63.42 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=72.3
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHh----hcccc----c-cccccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGLI----G-TVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~----~rg~~----~-~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
+.|+|+.++-|+|+-++.....- .|+-++.. .-|...- .-|+= = +-.|..+.+...+++||+|=.+-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 58999999999999888754321 35556643 3333221 12331 1 122333322233678999866532
Q ss_pred -cccccc------CCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEe
Q 013393 360 -FSEIEE------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLS 413 (444)
Q Consensus 360 -~~~~~~------~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~ 413 (444)
|+...+ -.=...+++-..=|+|+|||.+++-....-+....+.+..-.++++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 110000 001256677777899999999999666665666677777777887643
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.097 Score=48.55 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=74.1
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccch-----H--HHHHHHHHcC-CCcEEEEecCccCC---
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVH-----E--NQIQFALERG-IPSTLGVLGTKRLP--- 103 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis-----~--a~i~~a~e~~-~~~~~~~~d~~~lp--- 103 (444)
.|+++. +|+|+=.|.|.|++-++.. .-....+.|.+.. + .+...+++.. .+....-...-.++
T Consensus 45 Glkpg~---tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq 121 (238)
T COG4798 45 GLKPGA---TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQ 121 (238)
T ss_pred ccCCCC---EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCC
Confidence 556666 9999999999999988762 1123344554431 1 1111222211 11111111111122
Q ss_pred ----CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhh----HH--HHHHHHHHHHhcCeE
Q 013393 104 ----YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----RR--IWNAMYDLLKSMCWK 173 (444)
Q Consensus 104 ----~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~----~~--~~~~l~~l~~~~gf~ 173 (444)
.+..++|.+.... .+| .....++..++++.|||||.+++.++....-.... .. .-..+....+..||+
T Consensus 122 ~~d~~~~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 122 KLDLVPTAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred cccccccchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence 1123344443333 233 34556899999999999999999765543211111 11 123567788899998
Q ss_pred EEeeec
Q 013393 174 IVSKKD 179 (444)
Q Consensus 174 ~v~~~~ 179 (444)
...+..
T Consensus 200 l~aeS~ 205 (238)
T COG4798 200 LEAESE 205 (238)
T ss_pred eeeeeh
Confidence 876654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.017 Score=58.98 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=36.9
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 101 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~ 101 (444)
+|||+-||+|.++..|++. .|+|+++.+..+..+..+.....-.++.|...+.++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 6999999999999999984 799999988777666544333333467787665543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.017 Score=56.40 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=66.1
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhhcc-------c--cccccccccCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDRG-------L--IGTVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~rg-------~--~~~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..|+|..+|-|.++..|... |-+ +|+=+|- ++-|...-+|. . |-..+.-.+.+|.=+.+||++.++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 47999999999999887653 222 4555553 35555544431 1 223333456666444799999988
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..+.... +...++-||-|+|||||.+++-|
T Consensus 153 ~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV----DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC----CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7776332 57889999999999999998865
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0097 Score=59.15 Aligned_cols=70 Identities=13% Similarity=0.001 Sum_probs=44.2
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCC--CCccEEEeccc
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPS--RSFELAHCSRC 117 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~--~sFDlI~~~~~ 117 (444)
.+||.+||.|..+..+++. .|+|+|.++.++..+...... ..++.+...+...+. .++ .++|.|++...
T Consensus 22 ~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 8999999999999999874 467776666554433322211 235666666655432 111 26888887654
Q ss_pred c
Q 013393 118 R 118 (444)
Q Consensus 118 ~ 118 (444)
+
T Consensus 100 v 100 (296)
T PRK00050 100 V 100 (296)
T ss_pred c
Confidence 3
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.011 Score=57.81 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=60.1
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc----ccccccccccCCCCCCcccchhhccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg----~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
..|+|+.++.|+++..|.... -.+|+=++- ++.+...-+|- -+-..+.=++..+.=+.+||+|++...+-+..
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~ 131 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLS 131 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCC
Confidence 479999999999988875431 113444443 23333333321 12111111122222247999999976654332
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
..+...++-|+-|+|+|||.+++-|-
T Consensus 132 --~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 132 --YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred --HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 12477899999999999999999764
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.011 Score=55.93 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=70.8
Q ss_pred EEEecccccchhhhhccCC-CceEEEecccc-CCCchhH----Hhhcccc---ccccccccCCCCCCcccchhhcccccc
Q 013393 291 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKI----IYDRGLI---GTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~-~~~~l~~----~~~rg~~---~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
.|+|+.++.|+++..+.+. |- -+|+-++ +++.+.. +-+.|+- -+.+.-.+.. .+|.+||+|++.++|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHHHHH
Confidence 5899999999998887542 21 1333333 2333333 2234552 2222212222 2468999999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEeccHH----------------HHHHHHHHHhhcccee
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 410 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~----------------~~~~~~~~~~~~~w~~ 410 (444)
... +...++-++.|+|+|||++++.|... ...++.+++..-.+++
T Consensus 79 ~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 79 HIK----DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV 139 (224)
T ss_pred hCC----CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence 442 37889999999999999999976421 1345556666666665
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.048 Score=54.99 Aligned_cols=131 Identities=16% Similarity=0.085 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-------CCCcEEEEecCccC-CCCCCCcc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-------GIPSTLGVLGTKRL-PYPSRSFE 110 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-------~~~~~~~~~d~~~l-p~~~~sFD 110 (444)
...++||=+|-|.|.-.+.+.+- +++-+|++|.+++-+..+.+... .+.+.+...|+..+ .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 34568999999999999999873 56777777766644432222111 22344555554332 22356899
Q ss_pred EEEeccccccccccH-----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 111 LAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 111 lI~~~~~~l~~~~d~-----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.|+.-. .-+-.+.. .++..-+.|.|+++|.++++..++|.... .+-.+..-++++||.+...+
T Consensus 368 ~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~----vfw~i~aTik~AG~~~~Pyh 435 (508)
T COG4262 368 VVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR----VFWRIDATIKSAGYRVWPYH 435 (508)
T ss_pred EEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc----eeeeehhHHHhCcceeeeeE
Confidence 998643 11111111 26788889999999999998877664322 23345666788898776544
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.23 Score=46.35 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=83.4
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--C--CCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--Y--PSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~--~~~sFDlI~~~~~~ 118 (444)
+||=+|+-+|....++++ ..+.++++++....+ .+..|.+| .|+.-...|+. .| | --+..|+|++--+
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re-Ll~~a~~R-~Ni~PIL~DA~-~P~~Y~~~Ve~VDviy~DVA- 154 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE-LLDVAEKR-PNIIPILEDAR-KPEKYRHLVEKVDVIYQDVA- 154 (231)
T ss_pred EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH-HHHHHHhC-CCceeeecccC-CcHHhhhhcccccEEEEecC-
Confidence 899999999988888876 248899999976644 44666665 33333344542 23 1 1356899987542
Q ss_pred ccccccH-HHHHHHHHhhcCCCeEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 119 IDWLQRD-GILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 119 l~~~~d~-~~~L~ei~rvLkPGG~lvis~p~~~-~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.++. +.+..++...||+||+++++...-. .-+.+....+.+-.+.+++.+|++.+.-+
T Consensus 155 ---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 155 ---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred ---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEec
Confidence 2344 4678889999999998887542211 12233456777666677778898877654
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.13 Score=45.21 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCCCeEEEECCCcchHHHHHhh-----C---CceEEEcCcccchHHHHHHHHHcC----CCcEEEEecCccCCCCCCCcc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLS-----H---DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFE 110 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~-----~---~V~gvdis~~dis~a~i~~a~e~~----~~~~~~~~d~~~lp~~~~sFD 110 (444)
....+|+|+|||.|.++..|+. . .|+++|..+.....+. +.+++.+ .+..+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4455899999999999998887 3 6778887765443332 3333333 12223233222221 134567
Q ss_pred EEEeccccccccccHHH-HHHHHHhhcCCCeEEEEEcCCCC
Q 013393 111 LAHCSRCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~-~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+++. +|-..+... +++...+ |+-.+++..|.-|
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 7763 555556553 3433333 6666776667654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.026 Score=53.58 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=59.9
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHH----hhccc--cccccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKII----YDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~----~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.++-|.++..|.+. |- -+|+=++- ++.+... -+.++ +-+.+.=.+.++.-+.+||+|++...+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 47999999999999888642 21 12333332 2333221 12233 222332233333224799999988776
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
... . +...++-|+-|+|+|||.+++.|.
T Consensus 125 ~~~-~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNV-P---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccC-C---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 532 2 356788999999999999998663
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.055 Score=54.87 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=40.4
Q ss_pred CCCeEEEECCCcchHHHHHhhC--------------------CceEEEcCcccchHHHHHHHHH-----cCCCcEEE-Ee
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTLG-VL 97 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~--------------------~V~gvdis~~dis~a~i~~a~e-----~~~~~~~~-~~ 97 (444)
+.-+|+|+||.+|..+..+.+. .|.--|+-..|.+.-....... ...++... +.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3447999999999777655430 3455677777765433222221 12233222 22
Q ss_pred -cCccCCCCCCCccEEEeccccccccc
Q 013393 98 -GTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 98 -d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+..--||+++.|+++|+. .+||+.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred chhhhccCCCCceEEEEEec-hhhhcc
Confidence 2334447899999999998 489853
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.075 Score=52.27 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCCeEEEECCCcchHHH-HHhhC-----CceEEEcCcccchHHHHHHHH---HcCCCcEEEEecCccCCCCCCCccEEEe
Q 013393 44 NIRNVLDVGCGVASFGA-YLLSH-----DIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHC 114 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~-~La~~-----~V~gvdis~~dis~a~i~~a~---e~~~~~~~~~~d~~~lp~~~~sFDlI~~ 114 (444)
.+++|+=||||.=-++. .|++. .++++|+++.....+. +..+ ..+....|...|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 45699999999764443 34432 3566777665443332 1222 1245667888887666654468999997
Q ss_pred ccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 115 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 115 ~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+..+-.-.++..++|.++.+.++||..+++-.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 76322223467799999999999999999853
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.0061 Score=60.33 Aligned_cols=101 Identities=23% Similarity=0.319 Sum_probs=62.2
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCC-cEEEEecCccC-C-CCCCCccEEEe----
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRL-P-YPSRSFELAHC---- 114 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~d~~~l-p-~~~~sFDlI~~---- 114 (444)
+|||+.++.|.=+.++++ ..+++.|++..-+.... +..+..|.. +.....|.... + .....||.|..
T Consensus 88 ~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 88 RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred cccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 799999999987777765 25777777764332222 233334554 44444565444 1 22346999996
Q ss_pred ccc-ccccccc----------------HHHHHHHHHhhc----CCCeEEEEEcCC
Q 013393 115 SRC-RIDWLQR----------------DGILLLELDRLL----RPGGYFVYSSPE 148 (444)
Q Consensus 115 ~~~-~l~~~~d----------------~~~~L~ei~rvL----kPGG~lvis~p~ 148 (444)
+.. ++...++ ..++|..+.+.+ ||||+++.++=+
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 210 1111111 126899999999 999999998644
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0093 Score=58.71 Aligned_cols=108 Identities=16% Similarity=0.371 Sum_probs=68.1
Q ss_pred HHHHHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEecccc-CCCchh----HHhhccccccccccccCCCCC
Q 013393 274 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLK----IIYDRGLIGTVHDWCESFSTY 347 (444)
Q Consensus 274 ~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~-~~~~l~----~~~~rg~~~~~~~~~~~~~~y 347 (444)
+.+...++ |+.+. .|+|+..|+||+|-.+.+. .+ +|+-++ ++++.. -|-++||-+...=-|.-+...
T Consensus 52 ~~~~~~~~--l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 52 DLLCEKLG--LKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHTTTT----TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHhC--CCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 34555554 66664 8999999999999999765 55 344333 335555 367888754333223333334
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
|-+||-|=+-+.|-+... =+....+-.++|.|+|||.+++.
T Consensus 125 ~~~fD~IvSi~~~Ehvg~--~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGR--KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp --S-SEEEEESEGGGTCG--GGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCCEEEEEechhhcCh--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 449999988888886632 35788899999999999999885
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.022 Score=57.89 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=61.9
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhH----Hhhccccc---cc-cccccCCCCCCcccchhhcc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLIG---TV-HDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~~~---~~-~~~~~~~~~y~~~~dl~h~~ 357 (444)
..-..|+|+.+|.|+++..|.+.- -.+|+=++- ++.+.. +-++|+-. .. .|. +.++.-+.+||+|.+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEEC
Confidence 344579999999999998887531 123433332 233322 23345422 11 232 2334335899999987
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..+.++. +...+|-||-|+|||||.++|-|
T Consensus 194 ~~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7665432 36789999999999999999843
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.026 Score=56.91 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=59.8
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCCCchh---HHhh-ccc---cccccccccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK---IIYD-RGL---IGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~---~~~~-rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
+.|+|+.+|.|.++..|... +.-|.-|=|.. ..+- .+-. .+. |-+.+.=-|.++. +.+||+|++.+++-
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~--~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ--LFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 58999999999999888653 33333322221 1111 1100 010 1111111244555 89999999999876
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+ .-+...+|-++-|.|+|||.+++.
T Consensus 201 H----~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 H----RRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c----cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 335788999999999999999985
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.095 Score=53.60 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred CeEEEECCCcchHHHHHhhCC-------------------------------------------ceEEEcCcccchHHHH
Q 013393 46 RNVLDVGCGVASFGAYLLSHD-------------------------------------------IIAMSLAPNDVHENQI 82 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~-------------------------------------------V~gvdis~~dis~a~i 82 (444)
..++|-=||+|.+.+..+-.. ++|+|+++.++..+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 379999999999887665311 558888887765444
Q ss_pred HHHHHcCCC--cEEEEecCccCCCCCCCccEEEecccccccccc---H----HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 83 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR---D----GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 83 ~~a~e~~~~--~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d---~----~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..|++.|.. +.|.+.|...++-+-+.+|+|+|+.-.-.-+.+ . ..+.+.+.+.++--+.++++++.
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 456666654 788899988887544789999997411111111 1 24555666777777888887655
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.052 Score=50.05 Aligned_cols=130 Identities=16% Similarity=0.253 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccC-CCceEEEeccccCC-CchhH----Hhhccc--ccccc
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVH 338 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l~~----~~~rg~--~~~~~ 338 (444)
.+|++.+-.-...+ ..+. =.+++|+.+|.|.++..|.. .|. ..|+=++.. +.+.. +-+.|+ |-+.+
T Consensus 25 ~~~~~~~~d~i~~~-~~~~---~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~ 98 (181)
T TIGR00138 25 EIWERHILDSLKLL-EYLD---GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVN 98 (181)
T ss_pred HHHHHHHHHHHHHH-HhcC---CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe
Confidence 46777664433323 2343 25899999999987665532 121 235545532 33322 223344 22233
Q ss_pred ccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhcc-ceeE
Q 013393 339 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALK-WDGW 411 (444)
Q Consensus 339 ~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~-w~~~ 411 (444)
.=.+.++ .+.+||+|-+.. + ..+.+++-++.|+|+|||.+++.+......++.++.+++. |..+
T Consensus 99 ~d~~~~~-~~~~fD~I~s~~-~-------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 99 GRAEDFQ-HEEQFDVITSRA-L-------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred cchhhcc-ccCCccEEEehh-h-------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 2223332 357999987765 2 2477888889999999999999999888999988887643 5554
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.04 Score=49.97 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=42.0
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCC--CCCCC-ccEEEec
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 115 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp--~~~~s-FDlI~~~ 115 (444)
+|+|+.||.|..+..+++. .|+++|+++.-+.-++ ..|+-.|. ++.+..+|..++. +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 7999999999999999985 5889988876543333 33444453 5788888854432 22122 8999985
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.026 Score=58.32 Aligned_cols=95 Identities=19% Similarity=0.388 Sum_probs=63.5
Q ss_pred eEEEecccccchhhhhccCC-CceEEEecccc-CCCchhHHhhc--cccccccccccCCCCCCcccchhhcccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~-~~~~l~~~~~r--g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..++|+.+|.|++|..+... .+ .|+-++ ++..+...-+| |+ ++ +--+..+...+.+||+|.+.++|....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg- 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVG- 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCC-
Confidence 47999999999999877653 32 455555 34555554443 32 11 111122222367899999998887442
Q ss_pred CCCChhhhhhhhcccccCCcEEEEec
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.-+...++-++.|+|+|||.+++.+
T Consensus 243 -~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 243 -PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2346789999999999999999864
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.023 Score=52.30 Aligned_cols=90 Identities=13% Similarity=0.194 Sum_probs=62.9
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEecccc-
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR- 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~- 118 (444)
.+.|+|+|+|.++...+. .+|++++..|.- .+.|.++ ..+..+.+.|+....| +..|+|+|-..-
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~-----a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPKR-----ARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcHH-----HHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 799999999988776655 378888877642 2344444 2356778888887777 468999986410
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lv 143 (444)
.-..+..-..+..+...||-++.++
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccc
Confidence 0112344478888888999998887
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.06 Score=52.55 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=66.6
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHH---c
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE---R 88 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e---~ 88 (444)
|.+|-. -....+.+.+.+... ....|||+|+|+|.++..|++. .++++++++.. .+.-++ .
T Consensus 9 gQnFL~-~~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~-----~~~L~~~~~~ 74 (262)
T PF00398_consen 9 GQNFLV-DPNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDL-----AKHLKERFAS 74 (262)
T ss_dssp TSSEEE-HHHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHH-----HHHHHHHCTT
T ss_pred CcCeeC-CHHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhcccCcceeecCcHhH-----HHHHHHHhhh
Confidence 444444 244566667776542 2338999999999999999874 67888777643 333333 3
Q ss_pred CCCcEEEEecCccCCCCC---CCccEEEeccccccccccHHHHHHHHHhhcCC
Q 013393 89 GIPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 138 (444)
Q Consensus 89 ~~~~~~~~~d~~~lp~~~---~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkP 138 (444)
..++.+...|+..+..+. .....|+++ +++ .--..++.++...-+.
T Consensus 75 ~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N---lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 75 NPNVEVINGDFLKWDLYDLLKNQPLLVVGN---LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp CSSEEEEES-TTTSCGGGHCSSSEEEEEEE---ETG-TGHHHHHHHHHHHGGG
T ss_pred cccceeeecchhccccHHhhcCCceEEEEE---ecc-cchHHHHHHHhhcccc
Confidence 467888888888777553 345566654 444 2234566666664343
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.036 Score=53.69 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=66.3
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccccccccccccCCCCCCcccchhhcccccc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
+....-..|+|+.+|.|.++..|... |- ..|+=++- +..+...-++++ -+.+.--+.++ ...+||+|+++.+|-
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhh
Confidence 44344468999999999999888754 22 13444443 455555556653 22222123332 246899999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.+. +...++-|+-|+|+|||.+++-
T Consensus 101 ~~~----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVP----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCC----CHHHHHHHHHHhCCCCcEEEEE
Confidence 332 3678999999999999999985
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.039 Score=57.98 Aligned_cols=55 Identities=27% Similarity=0.453 Sum_probs=43.1
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR 101 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~ 101 (444)
..+||+-||||.++..++++ .|+|+++++.++..|.. .|..+++ ++.|.++-+++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchhh
Confidence 48999999999999999985 89999999988877764 4455554 67887774433
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.057 Score=50.82 Aligned_cols=99 Identities=24% Similarity=0.277 Sum_probs=62.1
Q ss_pred ceeEEEecccccchhhhhccCCC-ceEEEeccccC-CCchhHHhhc--cccccccccc---cCCCCCCcccchhhccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM-SARLKIIYDR--GLIGTVHDWC---ESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~-~wv~~~~~~~~-~~~l~~~~~r--g~~~~~~~~~---~~~~~y~~~~dl~h~~~~~ 360 (444)
.-..|+|+.++-|+++..+.+.- .- -+|+-++. ++.+...-++ +.-...+-.+ +.++.-+.+||+||+..+|
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 34579999999999998886531 00 13444442 3445554444 1111111111 1122224789999999998
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..+. +...++-++-|+|+|||++++-+
T Consensus 98 ~~~~----~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE----DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC----CHHHHHHHHHHHhcCCcEEEEEe
Confidence 7442 47889999999999999998754
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.013 Score=48.60 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=38.7
Q ss_pred EEECCCcchHHHHHhhC-------CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccC-C-CCCCCccEEEeccc
Q 013393 49 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRL-P-YPSRSFELAHCSRC 117 (444)
Q Consensus 49 LDVGCGtG~~a~~La~~-------~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~l-p-~~~~sFDlI~~~~~ 117 (444)
||+|+..|..+..+++. .++++|..+. .+...+..++. ..++.+...+..+. + ++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777652 4677877764 11222222222 23466776665432 1 3357899999654
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
-|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 222245557899999999999999874
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.093 Score=48.24 Aligned_cols=131 Identities=10% Similarity=0.077 Sum_probs=79.6
Q ss_pred hHhhHHHHHHHH-HHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh----hccccccc
Q 013393 265 DIGIWQVRVVDY-WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGLIGTV 337 (444)
Q Consensus 265 ~~~~w~~~v~~y-~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~ 337 (444)
..-..++.+... ...+. +. .-..++|+.++.|.++.++... |- -+|+-++. +..+...- ..|+-. .
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~--~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i 83 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LH--RAKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-I 83 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CC--CCCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-e
Confidence 344566666653 23333 33 3457999999999998777532 21 23444443 22233221 123211 0
Q ss_pred cccc-cCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHhhccce
Q 013393 338 HDWC-ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWD 409 (444)
Q Consensus 338 ~~~~-~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~~~~w~ 409 (444)
.-.| .....++..||++.+++.. ..+..++-++-|.|+|||.+++-+ ..+-..++.++++...++
T Consensus 84 ~~~~~d~~~~~~~~~D~v~~~~~~-------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 84 DIIPGEAPIELPGKADAIFIGGSG-------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred EEEecCchhhcCcCCCEEEECCCc-------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 1011 1123456789999876643 247788889999999999999976 566678888888888875
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.18 Score=51.10 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--------CceEEEcCcccchHHHHHHHHHc--CCCc
Q 013393 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALER--GIPS 92 (444)
Q Consensus 23 ~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--------~V~gvdis~~dis~a~i~~a~e~--~~~~ 92 (444)
.|.....+|++-..-.++|+. +|||+.+-.|+=+..|++. .|++-|+++.-...-.-+. .+ ..+.
T Consensus 137 i~rqeavSmlPvL~L~v~p~~---~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~--~~l~~~~~ 211 (375)
T KOG2198|consen 137 IYRQEAVSMLPVLALGVKPGD---KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL--KRLPSPNL 211 (375)
T ss_pred chhhhhhhccchhhcccCCCC---eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH--hccCCcce
Confidence 345567788887777888887 8999999999888777762 3444444443221111111 22 1222
Q ss_pred EEEEecCccCC---------CCCCCccEEEecc-c----cccccc----------------c-HHHHHHHHHhhcCCCeE
Q 013393 93 TLGVLGTKRLP---------YPSRSFELAHCSR-C----RIDWLQ----------------R-DGILLLELDRLLRPGGY 141 (444)
Q Consensus 93 ~~~~~d~~~lp---------~~~~sFDlI~~~~-~----~l~~~~----------------d-~~~~L~ei~rvLkPGG~ 141 (444)
.+...+....| .....||-|.|-- | .+.... . .-.+|.+..++||+||.
T Consensus 212 ~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198|consen 212 LVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred eeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCE
Confidence 22222222222 2345699999820 1 011000 0 12688899999999999
Q ss_pred EEEEcCCC
Q 013393 142 FVYSSPEA 149 (444)
Q Consensus 142 lvis~p~~ 149 (444)
++.|+=+.
T Consensus 292 lVYSTCSL 299 (375)
T KOG2198|consen 292 LVYSTCSL 299 (375)
T ss_pred EEEeccCC
Confidence 99987554
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.14 Score=50.88 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHh----hCCceEEEcCcccchHHHHHHHHHcCC--CcE
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI--PST 93 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La----~~~V~gvdis~~dis~a~i~~a~e~~~--~~~ 93 (444)
+.-.|+.-++.++......++. .-++||||||.-..-..|. .-.++|.|+++..+..++....+..+. .+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~---~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPE---KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhcccccccc---ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 3457888888888754333211 3479999999874433332 236777777776666666544444233 344
Q ss_pred EEEecCcc-----CCCCCCCccEEEecc
Q 013393 94 LGVLGTKR-----LPYPSRSFELAHCSR 116 (444)
Q Consensus 94 ~~~~d~~~-----lp~~~~sFDlI~~~~ 116 (444)
+....... +..+.+.||+..|+-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEcCCccccchhhhcccceeeEEecCC
Confidence 44332111 222346899999986
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.22 Score=46.00 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=53.9
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEe-cCcc--------CC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKR--------LP 103 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~-d~~~--------lp 103 (444)
-|.|+. +|||+||..|+|+.-..++ .|.|+|+-....-+. +.+... |..+ -.
T Consensus 66 ~l~p~~---~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~G-----------a~~i~~~dvtdp~~~~ki~e~ 131 (232)
T KOG4589|consen 66 FLRPED---TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEG-----------ATIIQGNDVTDPETYRKIFEA 131 (232)
T ss_pred ccCCCC---EEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCC-----------cccccccccCCHHHHHHHHHh
Confidence 344555 9999999999999887764 478888765432111 111111 2111 01
Q ss_pred CCCCCccEEEeccccccc-----cccHH-------HHHHHHHhhcCCCeEEEEE
Q 013393 104 YPSRSFELAHCSRCRIDW-----LQRDG-------ILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 104 ~~~~sFDlI~~~~~~l~~-----~~d~~-------~~L~ei~rvLkPGG~lvis 145 (444)
.|....|+|++-. .+- ..|.. .++.-....++|+|.|+.-
T Consensus 132 lp~r~VdvVlSDM--apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 132 LPNRPVDVVLSDM--APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred CCCCcccEEEecc--CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 3567899998743 111 12222 2344445678899999984
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.1 Score=43.22 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred CCeEEEECCCcc-hHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CCCC-CCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVA-SFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYP-SRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG-~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp~~-~~sFDlI~~~~~~l 119 (444)
.++||=+|=.-- +++..+.. ++|+.+|+...-+ ....+.|++.+.++.....|... +|-. .++||++++-- .
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP--P 121 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP--P 121 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--C
Confidence 348999996654 45555533 4788888876544 23335677778888888888643 4421 48899999864 2
Q ss_pred cccccHHHHHHHHHhhcCCCe-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeecceeEeeccCchh--hHhhc
Q 013393 120 DWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNS--CYLKR 196 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG-~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~--c~~~~ 196 (444)
.-.+....++.+....||.-| ..+++- ...+.+...|.++.+.+.++|+-+...-.....|.--.... -....
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~----~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga~~i~~~~~~~~ 197 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGF----THKEASPDKWLEVQRFLLEMGLVITDIIPDFNRYEGAEIIGNTRFWQV 197 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB---S-GGGSHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEE----ecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhcccccchhhcccceeEE
Confidence 223455688999999999766 333321 12223456799999999999997766555444443211111 00111
Q ss_pred CCCCCCCcccCCCCcchhhhhcccccccccc
Q 013393 197 VPGSRPPLCSSDDDPDVTWNVLMKACISPYS 227 (444)
Q Consensus 197 ~~~~~p~lc~~~~~~~~awy~~l~~ci~~~p 227 (444)
. + ....++..||......+..+.
T Consensus 198 l-----~---v~~~~~~~~y~s~~~rie~~~ 220 (243)
T PF01861_consen 198 L-----P---VKKRPEKIWYRSTMPRIETVR 220 (243)
T ss_dssp S-----S---S----SS---EEEEEEEE--T
T ss_pred e-----c---cccccccccccceeEEEEEec
Confidence 0 0 013566778887776665554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.096 Score=50.63 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=60.3
Q ss_pred cCCceeEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHHhhcc-ccccccccccCCCCCCcccchhhcccccc
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~~~rg-~~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
....-.+|+|+.+|.|.++..|... |. -+|+=++.. .-+...-++- =+.+...=.+.+. .+.+||+++++..|.
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ 104 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh
Confidence 3344568999999999999888643 21 133333332 2222221110 0112211112221 246999999999886
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.+. +...++-+|-|+|+|||.+++.
T Consensus 105 ~~~----d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 105 WLP----DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hCC----CHHHHHHHHHHhcCCCcEEEEE
Confidence 332 3678999999999999999985
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.07 Score=48.72 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=73.0
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH----hhccccc--cccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGLIG--TVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~~~--~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|+.++.|.++.++..... .|+=++- +..+... ...|+-- +.-|+.+. .+.+||++-++--|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876432 4544443 3333321 1122211 11244333 3569999987765531
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCcEEEEeccHHH-HHHHHHHHhhccceeE
Q 013393 363 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSI-INYIRKFITALKWDGW 411 (444)
Q Consensus 363 ~~~-----------------~~c~~~~~~~e~drilrp~g~~~~rd~~~~-~~~~~~~~~~~~w~~~ 411 (444)
... ..+.+..++-++.|+|+|||.+++-+.... ..++.+.++...++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 110 122367889999999999999988765554 6677777777777774
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.041 Score=51.21 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=60.4
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhH----Hhhcccc--ccccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~----~~~rg~~--~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|+.+|.|.++..|.... ..|+-+|.. +-+.. +-+.|+- ..-.|. +.++ +|.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhcc-ccCCCCEEEEeccccc
Confidence 489999999999998887642 256666643 33332 2233431 111122 2222 3578999999888863
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEE
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+. .-....++-++.|.|+|||+++|
T Consensus 107 ~~--~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ--AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC--HHHHHHHHHHHHHHhCCCcEEEE
Confidence 32 23577899999999999998544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.03 Score=52.21 Aligned_cols=93 Identities=19% Similarity=0.323 Sum_probs=61.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-Cchh----HHhhcccc---ccccccccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLK----IIYDRGLI---GTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~----~~~~rg~~---~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
-.++|+.+|.|.++..|.+.. + +|+-+|.. .-+. .+-.+|+- ..-.|.++ ++ ++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-LT-FDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-CC-cCCCcCEEEEecchh
Confidence 479999999999999998652 2 55555542 3222 23344542 22234432 22 367899999988775
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
.+. .-....++-+|-|.|+|||.+++
T Consensus 107 ~~~--~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLE--AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCC--HHHHHHHHHHHHHHcCCCcEEEE
Confidence 222 23478899999999999999655
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.031 Score=53.74 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc--cccccc
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHD 339 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~--~~~~~~ 339 (444)
..|++.+.... . ...+. .|+|+.+|.|-.+..|.+.-----.|+-+|- ++-|.+.-+| |+ |=..+.
T Consensus 33 ~~wr~~~~~~~---~--~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLL---G--LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHH---T----S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhcc---C--CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 56777654432 2 22222 8999999999988877643111125666664 4666665443 33 222333
Q ss_pred cccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 340 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 340 ~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
=.|.+|.-..|||.+=++..+-. -++..-.|-||-|+|||||.++|=|
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn----~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRN----FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHh----hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 35777766699999987766552 2568889999999999999998843
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.13 Score=52.79 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=68.2
Q ss_pred HHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh----C-CceEEEcCcccchHHHHHHHHHcCCCc-EEEEecCc
Q 013393 27 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----H-DIIAMSLAPNDVHENQIQFALERGIPS-TLGVLGTK 100 (444)
Q Consensus 27 ~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~----~-~V~gvdis~~dis~a~i~~a~e~~~~~-~~~~~d~~ 100 (444)
.+..+++...-+-++|. ||||+.+-.|.=+.+++. . .|++.|....-+ ....+.+...|.+. .+...|..
T Consensus 227 ~~sS~Lpv~aL~Pq~gE---RIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ 302 (460)
T KOG1122|consen 227 NASSFLPVMALDPQPGE---RILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGR 302 (460)
T ss_pred cCcccceeeecCCCCCC---eecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcc
Confidence 34455554443445555 899999999965555554 2 344444433222 11222333345543 44455665
Q ss_pred cCC---CCCCCccEEEe----cccccc-------ccc----------cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 101 RLP---YPSRSFELAHC----SRCRID-------WLQ----------RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 101 ~lp---~~~~sFDlI~~----~~~~l~-------~~~----------d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
.+| ++. +||-|.. +...+- +.. =..++|..+...++|||+|+.|+=...
T Consensus 303 ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 303 EFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred cccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 555 554 8999984 321111 111 123788999999999999999876543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.16 Score=49.64 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=51.4
Q ss_pred CCCeEEEECCCcc--hHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCC--cEEEEecCccC------------
Q 013393 44 NIRNVLDVGCGVA--SFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRL------------ 102 (444)
Q Consensus 44 ~~~rVLDVGCGtG--~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~l------------ 102 (444)
.++..||||||-= ...-.+++ ..|.-+|..|+-+..+..-.+ ...+ ..+...|..+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 5778999999943 23333433 478888888865433322121 2233 56777775441
Q ss_pred -CCCCCCccEEEecccccccccc---HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 103 -PYPSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 103 -p~~~~sFDlI~~~~~~l~~~~d---~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.+ ++..=++. ..++||++| +..++..+...|.||.+|+++...
T Consensus 146 lD~-~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LDF-DRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --T-TS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCC-CCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 11 23333333 336888755 468999999999999999998654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.12 Score=48.18 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=60.3
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccc----ccc-ccccccCCCCCCcccchhhccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL----IGT-VHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~----~~~-~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.=..|+|+.++.|.++.++... |. --+++-++. +..+..+-++.- +-+ ..|-.+ .+.-+.+||+++++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeee
Confidence 3458999999999998887542 21 012333332 233333333321 111 122222 23234689999988776
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.. -.+...++-++-++|+|||.+++-+
T Consensus 117 ~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RN----VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 52 2457889999999999999999854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.1 Score=49.09 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=60.0
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccc--cccccccccCCCCCCcccchhhcccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..|+|..++.|.+...|... |.. .|+-++. +.-+.....+.- +-.++.=.+.++..+.+||+|.+++++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA--EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC--cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc--
Confidence 57999999999999888653 110 1222222 122222222210 111222223445556899999999888622
Q ss_pred CCCChhhhhhhhcccccCCcEEEEec
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.+...++-++-|+|+|||.+++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 347889999999999999999853
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.053 Score=52.54 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=63.7
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccccc---cccccccCCC-CCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIG---TVHDWCESFS-TYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~~~---~~~~~~~~~~-~y~~~~dl~h~~~~~ 360 (444)
..|+|+.+|.|.++..|.... -+|+-++. +..+...- +.|+.. +.+.-.+.++ ..+.+||++.+.++|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 589999999999999998753 35666664 34454432 234422 1111111122 346899999999998
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
..+. +...++-++-|+|+|||.+++-
T Consensus 123 ~~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVA----DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhC----CHHHHHHHHHHHcCCCeEEEEE
Confidence 7443 3578899999999999999873
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.078 Score=49.65 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=76.1
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc--ccccc-ccccCCC--CCCcccchhhcc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL--IGTVH-DWCESFS--TYPRTYDLLHAW 357 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~--~~~~~-~~~~~~~--~y~~~~dl~h~~ 357 (444)
-.+++|+.++.|.++..|... |- .+|+=++- +.-+... ...|+ +-+.+ |..+.++ .-+.+||++-..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 468999999999999888643 32 13444442 2333322 12233 12222 2224444 226789998764
Q ss_pred ccccc----cccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhccceeE
Q 013393 358 KVFSE----IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 358 ~~~~~----~~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~w~~~ 411 (444)
..... ...++.....+|-++.|+|+|||.++|. +....+.++.+.+..-.|.++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 32210 1122334678999999999999999884 788888888888888888875
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.13 Score=51.62 Aligned_cols=48 Identities=25% Similarity=0.235 Sum_probs=31.6
Q ss_pred cCCCC-CCCccEEEecccccccccc--HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 101 RLPYP-SRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 101 ~lp~~-~~sFDlI~~~~~~l~~~~d--~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++++ ...|++|+...-+++--.. ....++.+..++.|||.|++..+.
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 34444 3567877766544443211 124788888999999999998765
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.24 Score=46.09 Aligned_cols=147 Identities=11% Similarity=0.124 Sum_probs=83.8
Q ss_pred CCChhHHHh--hHhhHHHHHHHHH-HHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh--
Q 013393 256 GVTTEEFHE--DIGIWQVRVVDYW-KQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY-- 329 (444)
Q Consensus 256 g~~~~~f~~--~~~~w~~~v~~y~-~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~-- 329 (444)
|+..+.|.+ +.-.|++++..-. ..+ .-..=..++|+.++-|.++..+...-----+|+=++. +.-+..+-
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~~l~~l----~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRALALSKL----RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHHHHHHc----CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 566667775 4458888886432 222 3233347999999999997755321000023444443 22333221
Q ss_pred --hccccc---c-ccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHH
Q 013393 330 --DRGLIG---T-VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKF 402 (444)
Q Consensus 330 --~rg~~~---~-~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~ 402 (444)
.-|+.. + -.|..+.++.++-.||++...+ ....+..++-++-|+|+|||.+++. -+.+.+.++...
T Consensus 85 ~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~-------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (198)
T PRK00377 85 AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG-------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSA 157 (198)
T ss_pred HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC-------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHH
Confidence 123211 1 1233333334445688776533 1235788899999999999999882 245666777777
Q ss_pred HhhccceeEEe
Q 013393 403 ITALKWDGWLS 413 (444)
Q Consensus 403 ~~~~~w~~~~~ 413 (444)
++.+.++..+.
T Consensus 158 l~~~g~~~~~~ 168 (198)
T PRK00377 158 LENIGFNLEIT 168 (198)
T ss_pred HHHcCCCeEEE
Confidence 77666665443
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.14 Score=51.36 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=58.7
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCCC-chh---HH----hhccccccccccccCCCCCCcccchhhccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSA-RLK---II----YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~-~l~---~~----~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
=+.|+|+.++.|.++.+|.....- .|+-++... -+. .+ ...+-+.+..-=.|.++. +.+||+|-+.+++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL 198 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVL 198 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchh
Confidence 368999999999998877654221 244333221 111 11 001111111111233333 3489999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
-+ .-+..++|-|+-|+|||||.+++.
T Consensus 199 ~H----~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 199 YH----RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred hc----cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 73 346889999999999999999985
|
Known examples to date are restricted to the proteobacteria. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.22 Score=50.33 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=63.5
Q ss_pred CCCCCCCCCCeEEEECCC-cchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEec
Q 013393 37 DKLNNGGNIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 37 ~~L~~g~~~~rVLDVGCG-tG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
..+.|++ +|+=+|+| .|..+..++++. +..+...+.++...+.|++.|....+...|.....--.+.||+|+..
T Consensus 162 ~~~~pG~---~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 162 ANVKPGK---WVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred cCCCCCC---EEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 3555665 78888887 446777777631 23444445566777888888776655433222222112349999854
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
- . ...+....+.||+||.+++...+
T Consensus 237 v------~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 V------G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C------C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 3 2 45788889999999999997654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.19 Score=48.16 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=49.1
Q ss_pred EEEecCccC--CCCCCCccEEEecccc-c--c-----------ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhH
Q 013393 94 LGVLGTKRL--PYPSRSFELAHCSRCR-I--D-----------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 157 (444)
Q Consensus 94 ~~~~d~~~l--p~~~~sFDlI~~~~~~-l--~-----------~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~ 157 (444)
+...|..+. .++++++|+|+..-=. + . +.+-....+.|++|+|||||.+++....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~--------- 74 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW--------- 74 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---------
Confidence 334454332 3567888888875200 0 0 0001247889999999999998863211
Q ss_pred HHHHHHHHHHHhcCeEEEeeecceeEeeccC
Q 013393 158 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 188 (444)
Q Consensus 158 ~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l 188 (444)
.....+...+++.||.+. ...+|.|+.
T Consensus 75 ~~~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 75 NRVDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred ccHHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 112345667788899754 345798864
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.14 Score=44.59 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.3
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHH
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQ 81 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~ 81 (444)
++||+|||.|.++..+++. .+++++..+......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999888763 4777777765554444
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.25 Score=43.64 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=60.4
Q ss_pred ceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCC-C-CCCCccEEEeccccccccccH---------HHHHHHHHh
Q 013393 67 IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWLQRD---------GILLLELDR 134 (444)
Q Consensus 67 V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp-~-~~~sFDlI~~~~~~l~~~~d~---------~~~L~ei~r 134 (444)
|.+.||-...+............ .++.+...+-+.+. + +++++|+++.+...++- .|. -.+++.+.+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPg-gDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPG-GDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CT-S-TTSB--HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCC-CCCCCCcCcHHHHHHHHHHHH
Confidence 56776665444333333322221 24666666655554 2 33489999988765554 221 278999999
Q ss_pred hcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh---cCeEEEee
Q 013393 135 LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS---MCWKIVSK 177 (444)
Q Consensus 135 vLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~---~gf~~v~~ 177 (444)
+|+|||.+.+..- ...+.+.+....+.+.++. ..|.+...
T Consensus 81 lL~~gG~i~iv~Y---~GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 81 LLKPGGIITIVVY---PGHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp HEEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred hhccCCEEEEEEe---CCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 9999999998643 3345566666677666665 34555443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.25 Score=48.39 Aligned_cols=132 Identities=13% Similarity=0.181 Sum_probs=79.3
Q ss_pred hhHHHhhHhhHHHHHHHHHHHhhhhccCCceeEEEecccccch----hhhhccCC----CceEEEeccccCC-CchhHHh
Q 013393 259 TEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGG----FAAALKDK----DVWVMNVAPVRMS-ARLKIIY 329 (444)
Q Consensus 259 ~~~f~~~~~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~----f~a~~~~~----~~wv~~~~~~~~~-~~l~~~~ 329 (444)
...|-+|...|..-.+.....+......++--.|+|..++-|- .|-.|.+. +.|-..|+=+|-. .-|. ..
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~-~A 148 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALE-KA 148 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHH-HH
Confidence 3447777788877666554433222222334689999999995 45444331 1244456655533 3332 22
Q ss_pred hcccc-----------------------------------ccccccccCCCCCCcccchhhccccccccccCCCChhhhh
Q 013393 330 DRGLI-----------------------------------GTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLL 374 (444)
Q Consensus 330 ~rg~~-----------------------------------~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~ 374 (444)
.+|.- =..||-++.- .-+..||+|.+.++|..... =....++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~--~~~~~~l 225 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDE--PTQRKLL 225 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCH--HHHHHHH
Confidence 22221 0135555532 12578999999999874321 2356799
Q ss_pred hhhcccccCCcEEEEeccHH
Q 013393 375 IEMDRMLRPEGFVIIRDKSS 394 (444)
Q Consensus 375 ~e~drilrp~g~~~~rd~~~ 394 (444)
-++-|+|+|||++++-....
T Consensus 226 ~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred HHHHHHhCCCeEEEEECccc
Confidence 99999999999999976544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.19 Score=46.94 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=22.0
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcC
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLA 73 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis 73 (444)
.+.|||||-|.+...|+.. -++|++|-
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR 93 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIR 93 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhh
Confidence 4999999999998888764 57777764
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.065 Score=53.01 Aligned_cols=113 Identities=14% Similarity=0.223 Sum_probs=71.3
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccCC-CchhH----HhhccccccccccccCCCC--CCcccchhhcccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESFST--YPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~----~~~rg~~~~~~~~~~~~~~--y~~~~dl~h~~~~~~~~ 363 (444)
.++|+.+|.|.+|..|.... -.|+=+|.. .-+.. +-+.|+ .+ +--|..+.. .+..||+|-+..+|..+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l-~v-~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL-NI-RTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC-ce-EEEEechhcccccCCccEEEEcchhhhC
Confidence 79999999999998887653 245555543 33332 334565 21 111211211 27899999999888643
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEe---ccH-----------HHHHHHHHHHhhccceeEE
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIR---DKS-----------SIINYIRKFITALKWDGWL 412 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~r---d~~-----------~~~~~~~~~~~~~~w~~~~ 412 (444)
. .-.+..++-+|-|.|+|||++++- +.. ---++++++.+. |++..
T Consensus 198 ~--~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~ 256 (287)
T PRK12335 198 N--RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVK 256 (287)
T ss_pred C--HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEE
Confidence 2 235788999999999999996541 111 123556677766 88743
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.29 Score=47.95 Aligned_cols=102 Identities=16% Similarity=0.263 Sum_probs=58.9
Q ss_pred eeEEEecccccchhhhhccCC-C-c-eEEEeccccC-CCchhHHhhccc-cccccccccCCCCCCcccchhhcccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-D-V-WVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~-~-wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
-.+|+|+.+|-|.+++.|.+. | . . .+|+=+|- ++.+...-+|.- +...+---+.++.=+.+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~-~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~--~~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITT-MQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR--IYA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccC-CeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE--ecC--
Confidence 356999999999999888642 1 1 1 13455553 355555544421 11111111233433578999975 333
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEeccH-HHHHHHHHH
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKF 402 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd~~-~~~~~~~~~ 402 (444)
.+ .+-|+.|+|+|||.+++.... .-+.+++..
T Consensus 161 ---~~----~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ---PC----KAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ---CC----CHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 12 346899999999999886432 233444443
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.095 Score=42.61 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=44.4
Q ss_pred EecccccchhhhhccCCCceEEEeccccC-CCchhH----Hhhcccc---ccccccccCCCCCC-cccchhhcccccccc
Q 013393 293 MDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLI---GTVHDWCESFSTYP-RTYDLLHAWKVFSEI 363 (444)
Q Consensus 293 mDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~~---~~~~~~~~~~~~y~-~~~dl~h~~~~~~~~ 363 (444)
+|..++-|.++..+.+.- --..++=+|- +.-|.. +.+.+.- =+-.+--+.+...+ .+||+|.+.++|..+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 467788888888886541 1223443442 333421 2222211 01112223334444 599999999999966
Q ss_pred ccCCCChhhhhhhhcccccCCcEE
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFV 387 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~ 387 (444)
. ++..++-.+-+.|+|||.+
T Consensus 80 -~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-EE
T ss_pred -h---hHHHHHHHHHHHcCCCCCC
Confidence 3 4889999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.36 Score=45.32 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=58.7
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhh----ccc--cccccccccCCC-CCCcccchhhccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL--IGTVHDWCESFS-TYPRTYDLLHAWKVF 360 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~----rg~--~~~~~~~~~~~~-~y~~~~dl~h~~~~~ 360 (444)
-.+++|+.++-|.++..+.... ..|+=++.. ..+...-. -|+ +-..+.-.+.++ ..|.+||++.+.+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999988775432 123333321 22222211 122 111111111121 226799999999887
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
... .+...++-++.++|+|||.+++.+
T Consensus 123 ~~~----~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHV----PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhC----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 733 357889999999999999999865
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.24 Score=49.93 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=66.3
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----cc---cccccccccCCCCCCcccchhhccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g~---~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
.|+|..+|-|.++..|.... .+|+=+|.. ..+.+.-++ ++ |-..+.=.|.++..+.+||+|=+.+++.+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 79999999999998887532 256666643 444444333 22 22233333556655689999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+. +...+|-|+=|+|+|||.++|-+
T Consensus 211 v~----d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA----NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 47899999999999999999864
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.11 Score=43.76 Aligned_cols=40 Identities=20% Similarity=0.519 Sum_probs=27.4
Q ss_pred CccEEEecccccccc----cc--HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 108 SFELAHCSRCRIDWL----QR--DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 108 sFDlI~~~~~~l~~~----~d--~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.||+|.|-. +.-|+ -| ...+|+.+++.|+|||.|++...+
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 489999865 34442 12 237999999999999999996443
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.15 Score=45.90 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=39.9
Q ss_pred cccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 336 TVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 336 ~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
..+-=++.++.-+.+||++=+...+..+ .+....|-||-|+|+|||.++|-|-.
T Consensus 30 ~~~~d~~~lp~~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 30 WIEGDAIDLPFDDCEFDAVTMGYGLRNV----VDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred EEEechhhCCCCCCCeeEEEecchhhcC----CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 3344466677667899999776555422 25788999999999999999987643
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=2.8 Score=43.27 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=56.1
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccc-hHHHHHHHHHcCCCcE-EEEecCccCCCCCCCccEEEecccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDV-HENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~di-s~a~i~~a~e~~~~~~-~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
+||=++=..|.++..++...++.+ +..-+ +.+..+.++.++.+.. +...+... ++| +.+|+|+... ---...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~~-~~~d~vl~~~--PK~~~~ 120 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDSTA-DYP-QQPGVVLIKV--PKTLAL 120 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecccc-ccc-CCCCEEEEEe--CCCHHH
Confidence 699999999999999987665432 22222 3344445555555433 33333221 233 4599987432 111122
Q ss_pred HHHHHHHHHhhcCCCeEEEEEc
Q 013393 125 DGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.+..+..+.++|.||+.++...
T Consensus 121 l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 121 LEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHhhCCCCCEEEEEE
Confidence 3467888899999999987643
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.6 Score=42.30 Aligned_cols=99 Identities=20% Similarity=0.139 Sum_probs=56.2
Q ss_pred CCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHH------H-HHcCCCcEEEEecCccCC---CCCCC-cc
Q 013393 45 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQF------A-LERGIPSTLGVLGTKRLP---YPSRS-FE 110 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~------a-~e~~~~~~~~~~d~~~lp---~~~~s-FD 110 (444)
..+||++|+|+|..+..++. .++...|....- ...... + .+.+..+.+...+-...+ +-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~--~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV--ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhH--HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 45799999999966655544 244333332211 111111 1 111334444444322211 11223 99
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+|+++.|+. .....+.++.-+...|-.+|.+.+..
T Consensus 165 lilasDvvy-~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVY-EEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeee-cCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 999999744 45777888999999999999666643
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.76 Score=48.69 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh------C--CceEEEcCcccchHHHHHHHHHcCCCc
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPS 92 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~------~--~V~gvdis~~dis~a~i~~a~e~~~~~ 92 (444)
++.|.+.+.+.|.-...+- ..+...+|+=+|.|-|-+....++ + .+++++-.|..+...+-...+.-...+
T Consensus 345 Y~~Yq~Ai~~AL~Drvpd~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~V 423 (649)
T KOG0822|consen 345 YDQYQQAILKALLDRVPDE-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRV 423 (649)
T ss_pred HHHHHHHHHHHHHhhCccc-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCee
Confidence 4556665555553211111 112255789999999977665544 2 456777777665444332333335678
Q ss_pred EEEEecCccCCCCCCCccEEEeccccccccccH--HHHHHHHHhhcCCCeEEE
Q 013393 93 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFV 143 (444)
Q Consensus 93 ~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lv 143 (444)
.+...|+..++-|.+..|++++-. +..+..+. .+.|.-+.+.|||.|..+
T Consensus 424 tii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 424 TIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred EEEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEc
Confidence 888999999986568899998644 45553332 478999999999998766
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.17 Score=47.12 Aligned_cols=139 Identities=15% Similarity=0.248 Sum_probs=79.5
Q ss_pred hccCCceeEEEecccccchhhhhccCC--CceEEEeccccCCCchhHHhhc--cc--cc-cccccccCCCCCCcccchhh
Q 013393 283 VAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDR--GL--IG-TVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 283 ~l~~~~~rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~~~~l~~~~~r--g~--~~-~~~~~~~~~~~y~~~~dl~h 355 (444)
.|...+|+++++...+-|-|.+.|... .+-++-++|.- |...-+| |+ |- .-.|-.+..| +.+|||||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~A----l~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV 111 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRA----LARARERLAGLPHVEWIQADVPEFWP--EGRFDLIV 111 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHH----HHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHH----HHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEE
Confidence 478999999999999999999999754 45555555432 1111111 11 10 1112233333 68999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH----------HHHHHHHHHhhccceeEEeccccccCCCCCC
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALKWDGWLSEVEPRIDALSSS 425 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 425 (444)
.+-++--+. +.-++..++-.|...|+|||.+|+=.-.+ =.+-|..+++..-=++......+.+.
T Consensus 112 ~SEVlYYL~-~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~----- 185 (201)
T PF05401_consen 112 LSEVLYYLD-DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSP----- 185 (201)
T ss_dssp EES-GGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SST-----
T ss_pred EehHhHcCC-CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCC-----
Confidence 999987332 22346678888999999999999943322 13455566666555665444433322
Q ss_pred CceEEEEE
Q 013393 426 EERVLIAK 433 (444)
Q Consensus 426 ~~~~l~~~ 433 (444)
.|.-|+++
T Consensus 186 ~~~~~~~~ 193 (201)
T PF05401_consen 186 NEDCLLAR 193 (201)
T ss_dssp TSEEEEEE
T ss_pred CCceEeee
Confidence 46666654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.41 E-value=4.2 Score=36.93 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=71.9
Q ss_pred ECCCcchHHHHHhhC-----CceEEEcCcccch-------HHHHHHHHHcCCCcEEEEecCccCC----CCCCCccEEEe
Q 013393 51 VGCGVASFGAYLLSH-----DIIAMSLAPNDVH-------ENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 114 (444)
Q Consensus 51 VGCGtG~~a~~La~~-----~V~gvdis~~dis-------~a~i~~a~e~~~~~~~~~~d~~~lp----~~~~sFDlI~~ 114 (444)
||=|.=+|+..|+++ .+++..+...+.- ...++.-++.+..+.+ -.|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEEE
Confidence 555666888888773 4566655544311 1222222333554444 34555544 24688999998
Q ss_pred ccccccccc------c---------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 115 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 115 ~~~~l~~~~------d---------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++ +|.. + ...+|+.+.++|+++|.+.++.....++ ..| .+.+++++.|+.+....
T Consensus 82 NF---PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-----~~W-~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NF---PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-----DSW-NIEELAAEAGLVLVRKV 151 (166)
T ss_pred eC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-----ccc-cHHHHHHhcCCEEEEEe
Confidence 75 2222 1 1268899999999999999986543322 234 35688999999877654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=1 Score=42.87 Aligned_cols=104 Identities=12% Similarity=0.199 Sum_probs=66.1
Q ss_pred ccCCceeEEEecccccchhhhhccC---CCceEEEeccccC-CCchhHHhhccc---cccccccccCCCCCCcccchhhc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHA 356 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~---~~~wv~~~~~~~~-~~~l~~~~~rg~---~~~~~~~~~~~~~y~~~~dl~h~ 356 (444)
+...+-..|+|..+|.|.++..|.+ +.-...+|+-+|- ++-+....++.- +-...--++.++.-+.+||++-+
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEE
Confidence 4445567899999999999877753 1111235777774 455555444421 11112224555555789999999
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.+|.+.... .+..+|-||-|++| |.++|.|
T Consensus 136 ~~~lhh~~d~--~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 136 NHFLHHLDDA--EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCeeecCChH--HHHHHHHHHHHhcC--eeEEEec
Confidence 9988754321 25678999999999 5666655
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.19 Score=41.57 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=59.2
Q ss_pred EEEecccccchhhhhccC-CCceEEEeccccC-CCchhHHh----hccccccc----cccccCCCCCCcccchhhccccc
Q 013393 291 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIY----DRGLIGTV----HDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~----~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.|+|+.++.|.++.+|.. .|-.- |+=++- +..+...- +.++-.-. .|+.+. ...+..||++.+++ |
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~-~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGAR--VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSG-F 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSE--EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECS-G
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECC-C
Confidence 589999999999998876 23322 444443 33343322 23332222 333122 44455699999999 4
Q ss_pred c--ccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 S--EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~--~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+ .+... .....++-++-+.|+|||.++|.+
T Consensus 80 ~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 11111 345677888999999999999975
|
... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.65 Score=42.08 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=74.3
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH---------hhccccccccccccCCCCCCcccchhhccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII---------YDRGLIGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~---------~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
-..++|+.++-|.++..|.... -+|+=++- ++.+... -+||+.-+-+|+.+.++. .+||++=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3479999999999999987652 25555553 2333332 122244455677776653 4799985544
Q ss_pred cccccc-----------------cCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhccceeE
Q 013393 359 VFSEIE-----------------ERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 359 ~~~~~~-----------------~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~~ 411 (444)
-|.... .....+..++-++.|+|+|+|.+++--. ..-.+++.+.+....|++.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeee
Confidence 332100 0012356789999999999998866322 2235678888888888764
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.3 Score=42.88 Aligned_cols=135 Identities=18% Similarity=0.319 Sum_probs=77.2
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc---ccc---c-cccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR---GLI---G-TVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r---g~~---~-~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..++|+.++-|.++.+|... |-+ +|+-++. +..+...-++ ++. - +-.|+.+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 47999999999999888643 222 3444443 2333332221 211 1 1234444443 4789999775433
Q ss_pred cccc------cC----C------------CChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEeccccc
Q 013393 361 SEIE------ER----G------------CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 418 (444)
Q Consensus 361 ~~~~------~~----~------------c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~ 418 (444)
.... .. . =.+..++-++-++|+|||++++.-...--+.++++++...+.. +... .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~-v~~~--~ 262 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFAD-VETR--K 262 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCce-eEEe--c
Confidence 2100 00 0 0124566778899999999999755555667888887666642 1111 1
Q ss_pred cCCCCCCCceEEEEEe
Q 013393 419 IDALSSSEERVLIAKK 434 (444)
Q Consensus 419 ~~~~~~~~~~~l~~~k 434 (444)
.-.+.+++++++|
T Consensus 263 ---d~~~~~r~~~~~~ 275 (275)
T PRK09328 263 ---DLAGRDRVVLGRR 275 (275)
T ss_pred ---CCCCCceEEEEEC
Confidence 1235789998865
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.6 Score=42.89 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=67.2
Q ss_pred eEEEecccccchhhhhccCC-----CceEEEeccccCCCchhHHhhccccccccccccCC-------CCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESF-------STYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-----~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~-------~~y~~~~dl~h~~ 357 (444)
.+|+|+.+|-|+++.++... .++.--.-|. .. -.++--+..|..+.. .+-+.++|++=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~-----~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM-----KP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc-----cc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 48999999999997766432 2443322221 10 012222223544321 0113578887664
Q ss_pred ccc------cc-cccCCCChhhhhhhhcccccCCcEEEEe-----ccHHHHHHHHHHHhhccceeEEeccccccCCCCCC
Q 013393 358 KVF------SE-IEERGCSFEDLLIEMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALSSS 425 (444)
Q Consensus 358 ~~~------~~-~~~~~c~~~~~~~e~drilrp~g~~~~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 425 (444)
+.. +. .....+..+.+|-++-|+|+|||.+++- +-.+++.+++.. + |++.+.-.- .....+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~---~-~~~~~~~~~---~~~~~~ 178 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL---F-EKVKVTKPQ---ASRKRS 178 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh---h-ceEEEeCCC---CCCccc
Confidence 321 10 0001123578899999999999999982 223455444442 2 444432111 111224
Q ss_pred CceEEEEE
Q 013393 426 EERVLIAK 433 (444)
Q Consensus 426 ~~~~l~~~ 433 (444)
.|+.+||.
T Consensus 179 ~~~~~~~~ 186 (188)
T TIGR00438 179 AEVYIVAK 186 (188)
T ss_pred ceEEEEEe
Confidence 68999985
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.24 Score=47.13 Aligned_cols=111 Identities=18% Similarity=0.247 Sum_probs=63.7
Q ss_pred CCCeEEEECCCcchHHHHHhhC-------------CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC--------
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-------- 102 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~-------------~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-------- 102 (444)
..+|+.|+.+..|+|+..|.++ .++++|+-+...-+ .+.-...|+...
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~-----------GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIE-----------GVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccC-----------ceEEeecccCCHhHHHHHHH
Confidence 3568999999999999988762 26677766532111 112223343321
Q ss_pred CCCCCCccEEEeccc----cccccccH------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh
Q 013393 103 PYPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 169 (444)
Q Consensus 103 p~~~~sFDlI~~~~~----~l~~~~d~------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~ 169 (444)
-|..++.|+|+|-.+ .+|-+... -.+|.-...+|||||.|+-- ..+.......+.++..+.++
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK----ifRg~~tslLysql~~ff~k 182 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK----IFRGRDTSLLYSQLRKFFKK 182 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh----hhccCchHHHHHHHHHHhhc
Confidence 145568899999531 23322222 14555667899999999841 11222222345566666664
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.88 Score=43.98 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=64.3
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccccccccccccCCCCCCcccchhhccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
..|+|+.+|.|..+.++..... -.|+-+|- +.-+...- ..|+-...+-.+. ..+||++.|+-...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~~--- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILAN--- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcHH---
Confidence 5799999999988777654321 12333332 22333222 2233110110010 11799998764322
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhccceeE
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~~ 411 (444)
.+..++-++-|.|+|||.+++.+. .+-.+++.+.++...++..
T Consensus 191 ----~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 191 ----PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLD 234 (250)
T ss_pred ----HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEE
Confidence 245677899999999999999764 3345677777888778774
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.52 Score=46.67 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=65.3
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccccccccccccC-CCCCCcccchhhcccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCES-FSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~~~~~~~~~~~-~~~y~~~~dl~h~~~~~~~~ 363 (444)
..|+|+.+|.|..+.++..... -.|+=++- +.-+....+ .|+-.....-+.. ....+..||++.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 5799999999998766654432 13444442 233332222 1221112222221 222356899999876543
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhcccee
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 410 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~ 410 (444)
.+..++-++-|+|+|||++++-.- .+-.+++.+.+++- |+.
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 256788899999999999999542 22344555555554 665
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.99 Score=43.68 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=67.1
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+.+|+|||||.=-++...... .++|.||+...+.-.. .+....+.+..+.+.|...-+ +....|+.+..- +++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK-~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDP-PKEPADLALLLK-TLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccC-CCCCcchhhHHH-HHH
Confidence 459999999998877766542 5677776654332111 222334777888888855543 346799998765 355
Q ss_pred ccccHH-HHHHHHHhhcCCCeEEEEEcCCC--CCCChhhHH-HHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRDG-ILLLELDRLLRPGGYFVYSSPEA--YAHDPENRR-IWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~~-~~L~ei~rvLkPGG~lvis~p~~--~~~~~~~~~-~~~~l~~l~~~~gf~~v~~ 177 (444)
-++... ..-.++...++. =.+++|-|.- ..+..--.. .-..++.++..-+|.+...
T Consensus 183 ~le~q~~g~g~~ll~~~~~-~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALRS-PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp HHHHHSTTHHHHHHHHSCE-SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHhcchHHHHHHHhCC-CeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 443332 122233333332 2455554431 111111111 2247788888889975443
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.81 Score=43.71 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=56.9
Q ss_pred eeecCCC-CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHH
Q 013393 7 KINFPGG-GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQ 81 (444)
Q Consensus 7 ~~~fpg~-gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~ 81 (444)
+..||.+ ---...|...|++.++.+|.-..+.+. +.+ -++||||.|.-..--.+--+ ..+|.|+++..++.++
T Consensus 42 ~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~-~~~-i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~ 119 (292)
T COG3129 42 YWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIP-GKN-IRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAK 119 (292)
T ss_pred EecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCC-cCc-eEEEeeccCcccccccccceeecceeecCccCHHHHHHHH
Confidence 3445554 112245678899999999987665554 333 36999998865432222211 3445555554444444
Q ss_pred HHHHHHcCCC--cEEEEecCcc--CC---CCCCCccEEEecc
Q 013393 82 IQFALERGIP--STLGVLGTKR--LP---YPSRSFELAHCSR 116 (444)
Q Consensus 82 i~~a~e~~~~--~~~~~~d~~~--lp---~~~~sFDlI~~~~ 116 (444)
.......+.. +++....... ++ -..+.||+..|+-
T Consensus 120 ~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNP 161 (292)
T COG3129 120 AIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNP 161 (292)
T ss_pred HHHHcCcchhhheeEEeccCccccccccccccceeeeEecCC
Confidence 3333222222 2333222111 11 1257899999987
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.53 Score=44.66 Aligned_cols=95 Identities=14% Similarity=0.263 Sum_probs=61.4
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----cccccc--cccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g~~~~~--~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|+.++-|.++..+.... .+|+=++.. +.+...-++ |+-..+ .+..+-....+-+||+|.++++|..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 359999999999998887643 345555432 333322222 331222 2333222123468999999988873
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. -+...+|-++.|+|+|||.+++.+
T Consensus 127 ~----~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 V----PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred c----CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3 247789999999999999999864
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.10 E-value=2.8 Score=40.38 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=66.0
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC----CCCC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY----PSRS 108 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~----~~~s 108 (444)
.++|+. +||=+|+++|....+..+ .-|.++++++..- ...++.|+++ .++.-++.|+. .|. .-.-
T Consensus 153 hikpGs---KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkR-tNiiPIiEDAr-hP~KYRmlVgm 226 (317)
T KOG1596|consen 153 HIKPGS---KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKR-TNIIPIIEDAR-HPAKYRMLVGM 226 (317)
T ss_pred eecCCc---eEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhcc-CCceeeeccCC-Cchheeeeeee
Confidence 567776 899999999987777765 2578888887533 3344555554 44444455542 331 1235
Q ss_pred ccEEEeccccccccccH-HHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 109 FELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 109 FDlI~~~~~~l~~~~d~-~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.|+|++-- .. +|. ..+..++...||+||-|+++....
T Consensus 227 VDvIFaDv---aq-pdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 227 VDVIFADV---AQ-PDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred EEEEeccC---CC-chhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 67777532 22 344 356778899999999999976543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.27 Score=47.46 Aligned_cols=97 Identities=13% Similarity=0.212 Sum_probs=59.4
Q ss_pred eEEEecccccchhhhhccC---CCceEEEeccccC-CCchhHHhhc----cc---cccccccccCCCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~---~~~wv~~~~~~~~-~~~l~~~~~r----g~---~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
..|+|+.+|.|..+.+|.. .|-| .|+=++. +.-|...-+| |+ +-+.+.-.+.++. ..+|++-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEehhh
Confidence 3699999999999877754 3444 3544443 3334333222 22 2222222222221 3488877766
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
.+..+.. .....++-||-|.|+|||.+++.|.
T Consensus 134 ~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEP--SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6653321 2357899999999999999999763
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.33 Score=48.17 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=57.7
Q ss_pred ccCCceeEEEecccccchhhhhccCC-----CceEEEeccccCCCchhHHhhc-cccccccccccCCCCCC---cccchh
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYP---RTYDLL 354 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-----~~wv~~~~~~~~~~~l~~~~~r-g~~~~~~~~~~~~~~y~---~~~dl~ 354 (444)
|..+ ..|+|..++.|+|+..|.+. .|+-.-+-|....+-+.+.-+| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 4444 37999999999988777642 2444432222111234444343 5666777766542 122 356666
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
|++..+. =+...+++|+.|+|+|+|.++|
T Consensus 207 -----~~Dva~p-dq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 207 -----FADVAQP-DQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred -----EEeCCCc-chHHHHHHHHHHhccCCCEEEE
Confidence 4433211 1344567799999999999998
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.64 Score=44.45 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=68.0
Q ss_pred hhccCCceeEEEecccccchhhhhcc-CCCceEEEeccccCCCchhHHhhccccccccccccCCCCCCcccchhhccccc
Q 013393 282 TVAQKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 282 ~~l~~~~~rnvmDm~a~~G~f~a~~~-~~~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.....++++.++|...+.|.+++++. ..|-. .++-.|-|..+..+.+.. .+-.-=..-|.++|. ||++...+++
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~--rv~~~~gd~f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEAD--RVEFVPGDFFDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTT--TEEEEES-TTTCCSS-ESEEEEESSG
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhcccccc--ccccccccHHhhhcc-ccceeeehhh
Confidence 45677889999999999999999996 33433 233344444444444410 111111223577788 9999999999
Q ss_pred cccccCCCChhhhhhhhcccccCC--cEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPE--GFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~--g~~~~rd 391 (444)
-.+... ....||--+=+.|+|| |.++|-|
T Consensus 169 h~~~d~--~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 169 HDWSDE--DCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GGS-HH--HHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhcchH--HHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 855433 4677899999999999 9999854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.76 Score=46.73 Aligned_cols=115 Identities=12% Similarity=0.034 Sum_probs=71.7
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhcc---ccccccccccCCCCCCcccchhhccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRG---LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg---~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
..|+|+.++.|.++..+.+. +- -+|+=+|. ++.|...-++. =+-+.+.-.+.++.-+.+||++-+.+.+....
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 47999999999988776432 21 24444443 34444433321 02223333344454458999998887775322
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEeccH-----------------HHHHHHHHHHhhcccee
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------SIINYIRKFITALKWDG 410 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~~-----------------~~~~~~~~~~~~~~w~~ 410 (444)
+...++-|+-|+|+|||.+++-+.. ...+++.+++++..++.
T Consensus 193 ----d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 193 ----DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 3567899999999999999774321 12466777777777764
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.27 Score=47.09 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=58.4
Q ss_pred eEEEecccccchhhhhccCC---CceEEEeccccC-CCchhHHhh----ccc---cc-cccccccCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIYD----RGL---IG-TVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~---~~wv~~~~~~~~-~~~l~~~~~----rg~---~~-~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..++|+.+|-|.++..|.+. |-+ +|+-++- ++-|...-+ .+. +- +..|.++ ++ . ..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 46999999999998877642 332 3555553 333333222 121 11 1123322 22 1 358988877
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
..+..+.. =+...+|-+|-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~~--~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPP--EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCH--HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 76653221 1256789999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.85 Score=43.48 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=62.0
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 368 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c 368 (444)
..|+|..+|-|-++..|.+.- --+|+=+|- ++-|...-+++ ...+.-.|.+|.=+.+||++-+...+-. --
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~----~~ 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHA----SD 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhc----cC
Confidence 589999999999998887642 125666664 34455444442 2344556666665689999999776542 23
Q ss_pred ChhhhhhhhcccccCCc
Q 013393 369 SFEDLLIEMDRMLRPEG 385 (444)
Q Consensus 369 ~~~~~~~e~drilrp~g 385 (444)
+.+..+-||-|+|||.+
T Consensus 125 d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CHHHHHHHHHHHhcCce
Confidence 58899999999999953
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.56 Score=36.70 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=56.4
Q ss_pred EEecccccchhhhhccCCCceEEEeccccCC-CchhHHh---hcc---ccccccccccCCC-CCCcccchhhcccccccc
Q 013393 292 VMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY---DRG---LIGTVHDWCESFS-TYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 292 vmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~---~rg---~~~~~~~~~~~~~-~y~~~~dl~h~~~~~~~~ 363 (444)
++|+.++.|+++..+...+. .+++-.+.. +-+...- ..+ .+=.++.=+..+. .-+.+||++.+++.+...
T Consensus 2 ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 2 VLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred eEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 68999999999888876321 233333322 1111111 111 1222222222222 246789999999988731
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.. ....++-.+.+.|||+|.+++.
T Consensus 80 ~~---~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VE---DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh---HHHHHHHHHHHHcCCCCEEEEE
Confidence 22 4778888889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.1 Score=42.14 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=67.4
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-C-CchhHHhhcccccccccccc---------CCCCCCcccchhhc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-S-ARLKIIYDRGLIGTVHDWCE---------SFSTYPRTYDLLHA 356 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~-~~l~~~~~rg~~~~~~~~~~---------~~~~y~~~~dl~h~ 356 (444)
..|+|..++.|+|+..+.+. +. -.|+-++- + +.+ .|+.=+-.|..+ .+. +.+||+|-+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~--~~V~aVDi~~~~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~S 123 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDK--GRVIACDILPMDPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVMS 123 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCC--ceEEEEecccccCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEec
Confidence 47999999999997655432 10 02222221 1 111 122111122222 122 357888887
Q ss_pred cccccccccC-------CCChhhhhhhhcccccCCcEEEEe-----ccHHHHHHHHHHHhhccceeEEeccccccCCCCC
Q 013393 357 WKVFSEIEER-------GCSFEDLLIEMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALSS 424 (444)
Q Consensus 357 ~~~~~~~~~~-------~c~~~~~~~e~drilrp~g~~~~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 424 (444)
+......... -+..+.+|-|+=|+|+|||.+++- +..+++.++++.....+ ...+..+- ..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~------~~Kp~ssr-~~ 196 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK------VRKPDSSR-AR 196 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEE------EECCcccc-cc
Confidence 6432210000 011357899999999999999993 33455555444333322 23333322 23
Q ss_pred CCceEEEEEe
Q 013393 425 SEERVLIAKK 434 (444)
Q Consensus 425 ~~~~~l~~~k 434 (444)
+.|..+||..
T Consensus 197 s~e~~~~~~~ 206 (209)
T PRK11188 197 SREVYIVATG 206 (209)
T ss_pred CceeEEEeec
Confidence 5799999864
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=87.77 E-value=0.62 Score=44.47 Aligned_cols=117 Identities=19% Similarity=0.348 Sum_probs=72.6
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhH----Hhhccc--ccccc-ccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGL--IGTVH-DWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~----~~~rg~--~~~~~-~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..++|+.+|-|.++.++... |-+ +|+-++. +..+.. +-..|+ +-+++ |+-+.++ +.+||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 37999999999999988754 322 4444443 233332 222343 22222 3323333 4689999886544
Q ss_pred ccc------ccCCC----------------ChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhcccee
Q 013393 361 SEI------EERGC----------------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 410 (444)
Q Consensus 361 ~~~------~~~~c----------------~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~ 410 (444)
... ..... ....++-++-|+|+|||.+++.......++++++++...++.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 411 00000 023567789999999999999887777788888888877753
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.70 E-value=16 Score=34.78 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=74.0
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCC--cEEEEecCccCCCC-CCCccEEEeccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYP-SRSFELAHCSRCRI 119 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~-~~sFDlI~~~~~~l 119 (444)
++.||||--|.++.+|.+. .+++.|+++.-+..+..++.+ .+.. .....+|. -.++. +..+|.|+...+..
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 5999999999999999884 567888888776555544443 3332 33334443 12233 34799988766321
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.-....|.+-.+.|+.==+++++... .-..+++.+...+|.+..+.
T Consensus 97 ---~lI~~ILee~~~~l~~~~rlILQPn~----------~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 ---TLIREILEEGKEKLKGVERLILQPNI----------HTYELREWLSANSYEIKAET 142 (226)
T ss_pred ---HHHHHHHHHhhhhhcCcceEEECCCC----------CHHHHHHHHHhCCceeeeee
Confidence 22346677777777644467764221 11257788889999887664
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.64 E-value=0.16 Score=45.41 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=37.4
Q ss_pred ccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 341 CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 341 ~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
=..|. ||+-|+|-|.|++.+++-+ +...-+=|-.|+|||||++-|
T Consensus 40 e~~F~--dns~d~iyaeHvlEHlt~~--Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 40 ESMFE--DNSVDAIYAEHVLEHLTYD--EGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred hccCC--CcchHHHHHHHHHHHHhHH--HHHHHHHHHHHHhCcCcEEEE
Confidence 33455 6999999999999877643 577888999999999999977
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.61 Score=42.10 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=44.5
Q ss_pred CCCccEEEeccccccccc--------c---HHHHHHHHHhhcCCCeEEEEEcCCCCCCChh-hHHHHHHHHHHHHhcCeE
Q 013393 106 SRSFELAHCSRCRIDWLQ--------R---DGILLLELDRLLRPGGYFVYSSPEAYAHDPE-NRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~--------d---~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~-~~~~~~~l~~l~~~~gf~ 173 (444)
.++||.+.|.. .++|.- | ..+.+.++.++|||||.|+++.|-.-..... ..+++..+.-.+--.||+
T Consensus 61 ~~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe 139 (177)
T PF03269_consen 61 AGSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFE 139 (177)
T ss_pred hccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcE
Confidence 46899998766 465521 1 1378999999999999999988764322221 123444443333444777
Q ss_pred EEee
Q 013393 174 IVSK 177 (444)
Q Consensus 174 ~v~~ 177 (444)
.+..
T Consensus 140 ~i~t 143 (177)
T PF03269_consen 140 WIDT 143 (177)
T ss_pred EEee
Confidence 6654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.74 Score=44.38 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=68.8
Q ss_pred eeEEEecccccchhhhhccCCCceEEEecccc-CCCchhHHhhccc----cc--cccccccCCCCCCcccchhhcccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGL----IG--TVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~-~~~~l~~~~~rg~----~~--~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
=-+++|..+|-|=+|..+.+.-- --.|+=+| +++-|.+--+|-- .+ ..+-==|.+|.-.+|||++-.+.-+-
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 34899999999999999975321 22344444 3466666555543 22 22444567888889999998877665
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
... ++...|=||=|+|+|||.+++=|
T Consensus 131 nv~----d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 131 NVT----DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCC----CHHHHHHHHHHhhcCCeEEEEEE
Confidence 322 58999999999999999887743
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=0.76 Score=43.03 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=51.4
Q ss_pred eEEEecccccchhhhhccCC---CceEEEeccccCC-Cchh----HHhhcccc---cccc-ccccCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLK----IIYDRGLI---GTVH-DWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~---~~wv~~~~~~~~~-~~l~----~~~~rg~~---~~~~-~~~~~~~~y~~~~dl~h~~ 357 (444)
..++|+.+|.|.+++.|... .- .|+-++-. +-+. -+...|+- -+.+ |-.+.++. ..+||.|.++
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 149 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVT 149 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEc
Confidence 46999999999998777531 11 23333322 2221 22334542 2233 44444443 3689999888
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
..+..+ --|+-|.|+|||.+++-
T Consensus 150 ~~~~~~----------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 150 AAASTI----------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred cCcchh----------hHHHHHhcCcCcEEEEE
Confidence 765422 12566899999999884
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.5 Score=41.26 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=48.1
Q ss_pred CeEEEECCCcchHHHHHhh--------CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-------C-CCCCc
Q 013393 46 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------Y-PSRSF 109 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--------~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-------~-~~~sF 109 (444)
+.|+++|.-.|.-+..+++ +.|+|+|+.........++. .-....+.+..+|..... . ....-
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 3899999988865544432 57899998544332222111 011356778777754321 1 11233
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
.+|+- . .-|...+.-..|+....+++||+|+++.
T Consensus 113 vlVil-D-s~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 113 VLVIL-D-SSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEEE-S-S----SSHHHHHHHHHHT--TT-EEEET
T ss_pred eEEEE-C-CCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 45543 2 2344466778888899999999999984
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=87.11 E-value=0.47 Score=46.27 Aligned_cols=95 Identities=21% Similarity=0.175 Sum_probs=55.0
Q ss_pred eEEEecccccchhhhhccC--CCceEEEeccccC-CCchhHHhh----cccc--ccc-cccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKD--KDVWVMNVAPVRM-SARLKIIYD----RGLI--GTV-HDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~--~~~wv~~~~~~~~-~~~l~~~~~----rg~~--~~~-~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..|+|+.++-|..+..+.. .+-. +|+=++. +.-+...-+ .|+- -.. -|. +.++.-+.+||+|+++.+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~--~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG--KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 3899999999864332211 1211 2333332 233333222 2321 011 122 233433579999998887
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+. .. -+...++-|+=|+|||||.+++-|
T Consensus 156 ~~-~~---~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 IN-LS---PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cc-CC---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 76 22 246789999999999999999954
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=0.46 Score=52.01 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=61.9
Q ss_pred eEEEecccccchhhhhccC-CCceEEEeccccCC-CchhHHhhc----cc-cccccccccCCCC--CCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFST--YPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l~~~~~r----g~-~~~~~~~~~~~~~--y~~~~dl~h~~~~~ 360 (444)
..|+|..+|.|.++.+|.. .|- .+|+-+|-. +.|...-.+ |. +-+.+.=+..++. =|.+||++.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 5799999999999877753 221 345555533 334332222 21 1112222344442 26899999887655
Q ss_pred cccc------c---CCCChhhhhhhhcccccCCcEEEEecc
Q 013393 361 SEIE------E---RGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 361 ~~~~------~---~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
-.+. . ..-.+..+|-|+-|+|+|||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3211 1 113567889999999999999999874
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=85.97 E-value=0.93 Score=41.99 Aligned_cols=117 Identities=12% Similarity=0.197 Sum_probs=70.1
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-CchhH----HhhccccccccccccCC--C--CCC-cccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESF--S--TYP-RTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~----~~~rg~~~~~~~~~~~~--~--~y~-~~~dl~h~~~ 358 (444)
.-++|..+|.|.|+.+|... |- .||+=++.. .-+.. +-..|+-.+..=.|... + .+| .++|.++.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~- 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN- 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE-
Confidence 57999999999999888753 32 244444432 22222 22344422222122221 1 234 388888765
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhcc-cee
Q 013393 359 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK-WDG 410 (444)
Q Consensus 359 ~~~~~------~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~-w~~ 410 (444)
|+.. .++|+....++-++-|+|+|||.+++. |.....+++.+.+...- |+.
T Consensus 95 -~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 -FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred -CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 2211 134667788999999999999999886 66666776666665533 543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.80 E-value=0.49 Score=46.41 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=27.9
Q ss_pred CccEEEeccccccccccHHHH-HHHHHhhcCCCeEEEEEcCCCC
Q 013393 108 SFELAHCSRCRIDWLQRDGIL-LLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~-L~ei~rvLkPGG~lvis~p~~~ 150 (444)
.||+|.++.. +.-......+ .......++++|.+++.....|
T Consensus 196 ~ydlIlsSet-iy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 196 HYDLILSSET-IYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred chhhhhhhhh-hhCcchhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 7899988874 3333444444 5666778889998887554443
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=85.61 E-value=2.3 Score=39.87 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=57.2
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc----cc---cccccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r----g~---~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.-++|+.++-|.++..+... |. .-+|+-++. ++.+...-++ ++ +-+.+.=.+.++.=+.+||+|.++.++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 46999999999998776431 10 012333332 2222222221 11 222221122223225789999987765
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. ...+...+|-++-++|+|||.+++-+
T Consensus 132 ~----~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 R----NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred c----cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 4 23568889999999999999998854
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=2.4 Score=40.47 Aligned_cols=96 Identities=14% Similarity=0.238 Sum_probs=50.1
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhH----Hhhc-cccccccccccCC--CCCCcccchh
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDR-GLIGTVHDWCESF--STYPRTYDLL 354 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~----~~~r-g~~~~~~~~~~~~--~~y~~~~dl~ 354 (444)
++.+. .|+|..++-|+++..|.+. + --.|+-++. +.-|.. +-+| ++.-+..|-.++. ...+.++|.+
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 44443 6999999999999888653 1 002333332 222221 1222 2333333443321 1123456654
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
|+..... =....+|-|+-|+|+|||.++|
T Consensus 146 -----~~d~~~p-~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 146 -----YQDVAQP-NQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred -----EECCCCh-hHHHHHHHHHHHhcCCCcEEEE
Confidence 3311110 0122346799999999999999
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=2.5 Score=39.07 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCChhHHHhhHh--hHHHHHHHH-HHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh-
Q 013393 256 GVTTEEFHEDIG--IWQVRVVDY-WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY- 329 (444)
Q Consensus 256 g~~~~~f~~~~~--~w~~~v~~y-~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~- 329 (444)
|+..+.|.+..+ ..+.++... .+.+. +. .-..|+|..+|.|.++..+... |- -.|+=++- +..+...-
T Consensus 9 ~~~d~~~~~~~~~p~t~~~v~~~l~~~l~--~~--~~~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 9 GIPDELFERLPGIPLTKREVRLLLISQLR--LE--PDSVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRR 82 (196)
T ss_pred CCChHHhccCCCCCCCHHHHHHHHHHhcC--CC--CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHH
Confidence 444455655333 677888754 44343 33 3347999999999998766421 21 12333332 22332221
Q ss_pred ---hccc--ccccc-ccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHH
Q 013393 330 ---DRGL--IGTVH-DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKF 402 (444)
Q Consensus 330 ---~rg~--~~~~~-~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~ 402 (444)
+.|+ +=+.+ |-.+.++..+-.+|.++.++ ..++..++-++-|+|+|||.+++-. +.+.+.++.+.
T Consensus 83 n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 154 (196)
T PRK07402 83 NCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEG 154 (196)
T ss_pred HHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHH
Confidence 1233 11111 11111111111234443321 2357899999999999999998864 33345556666
Q ss_pred Hhhcc
Q 013393 403 ITALK 407 (444)
Q Consensus 403 ~~~~~ 407 (444)
++.++
T Consensus 155 ~~~~~ 159 (196)
T PRK07402 155 LAQLQ 159 (196)
T ss_pred HHhcC
Confidence 65553
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=85.09 E-value=0.9 Score=45.20 Aligned_cols=103 Identities=14% Similarity=0.271 Sum_probs=63.8
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhH----HhhccccccccccccCC--CCCCcccchhhc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKI----IYDRGLIGTVHDWCESF--STYPRTYDLLHA 356 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~----~~~rg~~~~~~~~~~~~--~~y~~~~dl~h~ 356 (444)
++-...+.++|+..+.|.++.++... |-. +|+-.+.|..+.. +-+.|+-+-.+-.+-.| ..+| .+|++-.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34456679999999999999888643 432 3444454444443 34456643332232222 1345 3788766
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++++-.... -....++-++-|.|+|||.++|-|
T Consensus 222 ~~~lh~~~~--~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSANE--QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCCh--HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 665542211 123568889999999999998865
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.95 E-value=4.9 Score=44.53 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=40.6
Q ss_pred CCccEEEeccccccccccH----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 107 RSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..||+++.-.. -+ ..++ ..+|+++.|+++|||.|.=-+ .-..++.-+..+||++....
T Consensus 165 ~~~d~~~lD~F-sP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t------------~a~~vr~~l~~~GF~v~~~~ 226 (662)
T PRK01747 165 ARADAWFLDGF-AP-AKNPDMWSPNLFNALARLARPGATLATFT------------SAGFVRRGLQEAGFTVRKVK 226 (662)
T ss_pred ccccEEEeCCC-CC-ccChhhccHHHHHHHHHHhCCCCEEEEee------------hHHHHHHHHHHcCCeeeecC
Confidence 56999996541 11 1233 389999999999999998421 12467788899999876543
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=84.60 E-value=13 Score=36.43 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=65.2
Q ss_pred eEEEECCCcchHHHHHhhCC---ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC--CCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP--SRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~---V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~--~~sFDlI~~~~~~l~~ 121 (444)
+++|+-||.|.+..-+.+.+ +.++|+. +..++..+.+.... +...|...+... ...+|+++.+.---.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~-----~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEID-----KSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCC-----HHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 59999999999977776653 3445444 44444444443222 345565554421 3569999985310111
Q ss_pred --------cccH-HHHHHH---HHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 --------LQRD-GILLLE---LDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 --------~~d~-~~~L~e---i~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..|. ..++.+ +.+.++|- ++++---.... .......+..+.+.+++.||.+...
T Consensus 76 S~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~-~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 76 SIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLL-THDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchh-ccCchHHHHHHHHHHHhCCcEEEEE
Confidence 1122 223433 44445666 33332211111 1112346778888889999876443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=0.63 Score=47.36 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=59.1
Q ss_pred EEEecccccchhhhhccCC-CceEEEeccccCC-CchhH----HhhccccccccccccCCCCCCcccchhhcccccccc-
Q 013393 291 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI- 363 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~----~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~- 363 (444)
.|+|+.+|.|.+++++... |.- .|+-++.. .-|.. +-..|+-+..+ ++..++.-+.+||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999988754 311 23333321 11111 11233323222 333444457899999998777421
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
....-..+.++-++-|.|+|||.++|=
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 111123678899999999999999773
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=1.5 Score=41.45 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=67.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccc--cccccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..++|+.++.|.++..+...+. -+|+=++- +..+...- ..|+ .-+-.|+.+.++ +.+||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 4799999999999887765432 14444443 23343221 1233 112235555443 368999998743331
Q ss_pred cc-----------------cCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhccceeE
Q 013393 363 IE-----------------ERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 363 ~~-----------------~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~w~~~ 411 (444)
.. ...+.+..++-++-|+|+|||.+++= .+.....++...+++-.|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 10 00112566777899999999999872 222234455555555555543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=84.19 E-value=4.1 Score=41.72 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=56.2
Q ss_pred CeEEEECCCc-chHHHHHhhCCceEE-EcCcccchHHHHHHHHHcCCCcEEEEecCcc-C-----CC-CCCCccEEEecc
Q 013393 46 RNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-----PY-PSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGt-G~~a~~La~~~V~gv-dis~~dis~a~i~~a~e~~~~~~~~~~d~~~-l-----p~-~~~sFDlI~~~~ 116 (444)
.+||.+|||. |..+..+++.. +. .+...+.++.+.+.+++.+. ..+......+ + .+ ..+.+|+|+...
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 3899999987 77777777641 11 12233444566677776632 2221111110 1 11 234699998642
Q ss_pred cc--------------ccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 117 CR--------------IDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 117 ~~--------------l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.. ++-..+....+.++.+.|+|+|.+++..
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 10 0011334568899999999999999864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.93 E-value=0.7 Score=44.85 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=66.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCCCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCCC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCS 369 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~ 369 (444)
--|.||..|=+-.|.. ...+|--|.+|+++..=+.-=|. ..|-=.+|-|+ |--|+|.+. -+
T Consensus 182 ~vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~V~~cDm~-------------~vPl~d~svDv--aV~CLSLMg---tn 242 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASS-ERHKVHSFDLVAVNERVIACDMR-------------NVPLEDESVDV--AVFCLSLMG---TN 242 (325)
T ss_pred eEEEecccchhhhhhc-cccceeeeeeecCCCceeecccc-------------CCcCccCcccE--EEeeHhhhc---cc
Confidence 3577887776655542 23467778888776542211111 12333578887 456788443 36
Q ss_pred hhhhhhhhcccccCCcEEEEeccHHHHHHHH---HHHhhccceeEEe
Q 013393 370 FEDLLIEMDRMLRPEGFVIIRDKSSIINYIR---KFITALKWDGWLS 413 (444)
Q Consensus 370 ~~~~~~e~drilrp~g~~~~rd~~~~~~~~~---~~~~~~~w~~~~~ 413 (444)
+.+-+.|.-|||+|||.++|-+-..-...++ .-++.|..+....
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 9999999999999999999965443333333 3456788887543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=83.74 E-value=1.6 Score=36.29 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=54.1
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-CchhH----Hhhccccc--cc-cc--cccCCCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIG--TV-HD--WCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~----~~~rg~~~--~~-~~--~~~~~~~y~~~~dl~h~~~ 358 (444)
..++|+.++.|.++..+... |- .+|+-++-. ..+.. +...|+-. +. .| |+. ..-+.+||.+=..+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL--EDSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC--hhhcCCCCEEEECC
Confidence 48999999999999888653 32 345555532 33332 12223211 11 11 222 22345788875443
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
..+ .+..++-++-|.|+|||++++-
T Consensus 97 ~~~-------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG-------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch-------hHHHHHHHHHHHcCCCCEEEEE
Confidence 222 3568899999999999999873
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=1.3 Score=41.62 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=48.2
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH----hhccccccccccccCCCCCC--cccchhhcccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGLIGTVHDWCESFSTYP--RTYDLLHAWKVFS 361 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~~~~~~~~~~~~~~y~--~~~dl~h~~~~~~ 361 (444)
=..|+|+.++.|.+++.|...--=.-.|+-++- ++-+... -.-|+=.+---.+..+..+| ..||+|++...+.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence 358999999999999877532000002222222 1222211 11232111112222333332 6799998876443
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.+.-++-+.|+|||.+++-
T Consensus 157 ----------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 157 ----------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ----------cchHHHHHhhCCCcEEEEE
Confidence 2233455689999999883
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=1.3 Score=43.67 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=46.2
Q ss_pred EEEEecCccC--CCCCCCccEEEecccc-c--c------------ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh
Q 013393 93 TLGVLGTKRL--PYPSRSFELAHCSRCR-I--D------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 155 (444)
Q Consensus 93 ~~~~~d~~~l--p~~~~sFDlI~~~~~~-l--~------------~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~ 155 (444)
.+..+|.... .+++++||+|+++--. . . |..-....+.++.|+|||||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~----- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN----- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh-----
Confidence 4445554442 3567889999985210 0 0 001124689999999999999998533210
Q ss_pred hHHHHHHHHHHHHhcCeEEEeeecceeEeecc
Q 013393 156 NRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 187 (444)
Q Consensus 156 ~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~ 187 (444)
... ..++.+.+|... ...+|.|+
T Consensus 85 ----~~~-~~~~~~~~f~~~----~~iiW~k~ 107 (284)
T PRK11524 85 ----MPF-IDLYCRKLFTIK----SRIVWSYD 107 (284)
T ss_pred ----hhH-HHHHHhcCcceE----EEEEEEeC
Confidence 111 233345567533 34589885
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.86 E-value=5.4 Score=38.92 Aligned_cols=100 Identities=10% Similarity=0.128 Sum_probs=57.9
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc-ccc------ccc-cccccCCCCCCcccchhhc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR-GLI------GTV-HDWCESFSTYPRTYDLLHA 356 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r-g~~------~~~-~~~~~~~~~y~~~~dl~h~ 356 (444)
..-++++++..+-|.++..+... |. ..|+-++- +..+.+.-+. ++- -+. -|--+-+.+.|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 45678999999999999877532 31 23333332 3444433322 111 111 1211223445778999965
Q ss_pred cccccccc-cCCCChhhhhhhhcccccCCcEEEE
Q 013393 357 WKVFSEIE-ERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 357 ~~~~~~~~-~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+ .|+... .........+-++=++|+|||.+++
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 5 343111 1112346888999999999999988
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=82.64 E-value=0.93 Score=41.28 Aligned_cols=142 Identities=19% Similarity=0.273 Sum_probs=67.6
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccC-----CCchhHHhhcccc---ccccccccCCCCCCcccchhh
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-----SARLKIIYDRGLI---GTVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-----~~~l~~~~~rg~~---~~~~~~~~~~~~y~~~~dl~h 355 (444)
++.+.-.+++|..+.=|||...+.........|+-+|- ......| +|=| .+...-.+.++.=.+.+||+-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 33446799999999999999999876522223333332 1111121 2211 111122222222226899999
Q ss_pred cccccccccc----CCCChhhhhhh---hcccccCCcEEEEe-----ccHHHHHHHHHHHhhccceeEEeccccccCCCC
Q 013393 356 AWKVFSEIEE----RGCSFEDLLIE---MDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALS 423 (444)
Q Consensus 356 ~~~~~~~~~~----~~c~~~~~~~e---~drilrp~g~~~~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 423 (444)
+|.-+..... .--.+.-++-. +-..|+|||.+|+. +..+++..++..-+..+ .+.+.... +
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~------~~Kp~~sr-~ 169 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVK------IVKPPSSR-S 169 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEE------EEE-TTSB-T
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEE------EEECcCCC-C
Confidence 9995541100 00011111222 23559999988772 33466666666444432 23333221 2
Q ss_pred CCCceEEEEEe
Q 013393 424 SSEERVLIAKK 434 (444)
Q Consensus 424 ~~~~~~l~~~k 434 (444)
.+.|..|||.+
T Consensus 170 ~s~E~Ylv~~~ 180 (181)
T PF01728_consen 170 ESSEEYLVCRG 180 (181)
T ss_dssp TCBEEEEESEE
T ss_pred CccEEEEEEcC
Confidence 35788998874
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.94 E-value=4 Score=40.83 Aligned_cols=115 Identities=19% Similarity=0.323 Sum_probs=68.9
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc---cccc-cccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL---IGTV-HDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~---~~~~-~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..++|+.+|.|.++.+|... |. .+|+-++- +..+.+. -..|+ |-++ .|+.+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 47999999999999988643 43 34666664 3444432 23354 2222 25545443 368999987632
Q ss_pred ccc------c------cc--------CCC-ChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhh--ccce
Q 013393 360 FSE------I------EE--------RGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITA--LKWD 409 (444)
Q Consensus 360 ~~~------~------~~--------~~c-~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~--~~w~ 409 (444)
+.. + .. +.. -...++-+.-+.|+|||.+++.-... ..+++++... +.|-
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEEE
Confidence 210 0 00 000 12567888999999999999854433 4457777664 3453
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=81.86 E-value=1.3 Score=41.72 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=50.4
Q ss_pred eEEEecccccchhhhhccCC--C-ceEEEeccccC-CCchhH----Hhhccc--c-ccccccccCCCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRM-SARLKI----IYDRGL--I-GTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~-~wv~~~~~~~~-~~~l~~----~~~rg~--~-~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
..|+|+.++.|.+++.|.+. + . .|+-++- +.-+.. +-+.|+ + =+..|..+.++. ...||+|++++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g---~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 154 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDG---LVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTA 154 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcC
Confidence 47999999999999988653 1 1 1333332 222221 223343 1 122344444333 25899998776
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
... .+.-++=+.|+|||.+++
T Consensus 155 ~~~----------~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 155 AGP----------KIPEALIDQLKEGGILVM 175 (215)
T ss_pred Ccc----------cccHHHHHhcCcCcEEEE
Confidence 443 222345678999999987
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.80 E-value=2.3 Score=40.99 Aligned_cols=115 Identities=19% Similarity=0.112 Sum_probs=79.0
Q ss_pred cCCceeEEEecccccchhhhhcc-CCCceEEEeccccCC-CchhHHhhccccccccccc--------cCCCCCCcccchh
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWC--------ESFSTYPRTYDLL 354 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~-~~~~wv~~~~~~~~~-~~l~~~~~rg~~~~~~~~~--------~~~~~y~~~~dl~ 354 (444)
.+..-|-.+|..+|=| +||..+ +. --||+-+|-. ..|.++ ..+.=-+||+-- +.|..=+.+-|||
T Consensus 30 ~~~~h~~a~DvG~G~G-qa~~~iae~---~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI 104 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNG-QAARGIAEH---YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLI 104 (261)
T ss_pred hCCCcceEEEeccCCC-cchHHHHHh---hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeee
Confidence 3445569999999999 777664 22 2377777754 566632 333333444433 4444558999999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCc-EE---EEeccHHHHHHHHHHHhhccce
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEG-FV---IIRDKSSIINYIRKFITALKWD 409 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g-~~---~~rd~~~~~~~~~~~~~~~~w~ 409 (444)
-|.-+|- -|+++..+-++-|+|||.| .+ -.+|+..+--++-++..++.|+
T Consensus 105 ~~Aqa~H-----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 105 TAAQAVH-----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhhhHH-----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 8887775 5899999999999999999 22 2366666667777777777775
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=80.93 E-value=1.4 Score=37.13 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEc
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSL 72 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdi 72 (444)
.....|+|||.|.+.--|.+.+..|..+
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 3469999999999887777765544433
|
; GO: 0008168 methyltransferase activity |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.90 E-value=16 Score=39.19 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=64.3
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh----C----CceEEEcCcccchHHHHHHHHHcCCC--cE
Q 013393 24 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----H----DIIAMSLAPNDVHENQIQFALERGIP--ST 93 (444)
Q Consensus 24 y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~----~----~V~gvdis~~dis~a~i~~a~e~~~~--~~ 93 (444)
-.+.+.+++.. ....+|.|-.||+|++.....+ . .+.|.++.+....-+..+... ++.+ +.
T Consensus 174 v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~ 244 (489)
T COG0286 174 VSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDAN 244 (489)
T ss_pred HHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccc
Confidence 35556666642 2223899999999976554432 1 244555544333333322222 2333 34
Q ss_pred EEEecCccCCC-----CCCCccEEEecccc--ccccc----------------------cHHHHHHHHHhhcCCCeEEEE
Q 013393 94 LGVLGTKRLPY-----PSRSFELAHCSRCR--IDWLQ----------------------RDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 94 ~~~~d~~~lp~-----~~~sFDlI~~~~~~--l~~~~----------------------d~~~~L~ei~rvLkPGG~lvi 144 (444)
....|...-|. ..+.||+|+++.-. -.|.. ....+++.+...|+|||+..+
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 44444333332 33679999986310 11110 113689999999999998877
Q ss_pred EcCCC
Q 013393 145 SSPEA 149 (444)
Q Consensus 145 s~p~~ 149 (444)
..|..
T Consensus 325 vl~~g 329 (489)
T COG0286 325 VLPDG 329 (489)
T ss_pred EecCC
Confidence 66653
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=80.40 E-value=5.7 Score=39.18 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=52.1
Q ss_pred eEEEECCC-cchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc---C-CCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---L-PYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCG-tG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---l-p~~~~sFDlI~~~~~~l~~ 121 (444)
+||..|+| .|..+..+++.. +..+...+.++.+.+.+++.+....+...+... + ....+.+|+|+....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g---- 241 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG---- 241 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC----
Confidence 78888876 467777777641 112223334455556666655432221111000 0 123457998875321
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+.++.+.|+++|.++...
T Consensus 242 ---~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ---TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEEC
Confidence 1357888999999999999754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 444 | |||
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 6e-08 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 2e-07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 2e-07 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-07 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 4e-07 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 5e-07 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 1e-06 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 2e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-06 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 2e-06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 2e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 2e-06 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 3e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 5e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 5e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 6e-06 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 9e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 1e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 2e-05 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 2e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 2e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 2e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 5e-05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 9e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 2e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 3e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 4e-04 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 4e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 4e-04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 6e-04 |
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 6e-08
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 20/129 (15%)
Query: 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVL--GTK 100
++D+GCG F + H ++ + D+ E + A G + +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGL-----DLSEKMLARARAAGPDTGITYERADLD 99
Query: 101 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS---------SPEAYA 151
+L P SF+LA+ S + +++ L + + L PGG+FV+S + +A
Sbjct: 100 KLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWA 158
Query: 152 HDPENRRIW 160
D E RR W
Sbjct: 159 IDAEGRRTW 167
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 22/136 (16%)
Query: 48 VLDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT----- 99
+ D+GCG +L + I + D+ + I+ E + +
Sbjct: 50 IADIGCGTGGQTLFLADYVKGQITGI-----DLFPDFIEIFNENAVKANCADRVKGITGS 104
Query: 100 -KRLPYPSRSFEL--AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP-- 154
LP+ + +L + + I + E + L+ GG+ S + +
Sbjct: 105 MDNLPFQNEELDLIWSEGAIYNIG----FERGMNEWSKYLKKGGFIAVSEASWFTSERPA 160
Query: 155 ENRRIWNAMYDLLKSM 170
E W Y + +
Sbjct: 161 EIEDFWMDAYPEISVI 176
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 12/120 (10%)
Query: 47 NVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLG-VLG-TKRL 102
VLDVGCG L + + + D+ E IQ ERG L + G L
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGV-----DISEVMIQKGKERGEGPDLSFIKGDLSSL 110
Query: 103 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIW 160
P+ + FE ++W + L E+ R+L+ GY + P A + R++
Sbjct: 111 PFENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLY 169
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVH 78
+ +Y + + + G VLD+ CGV F L +++ + D+
Sbjct: 18 SQEYRSRIETLEPLLMKYMKKRGK---VLDLACGVGGFSFLLEDYGFEVVGV-----DIS 69
Query: 79 ENQIQFALERGIPSTLGVLGTK----RLPYPSRSFELAHCSRCRIDWLQRD-GILLLELD 133
E+ I+ A E V +L + ++F+ + + + + E+
Sbjct: 70 EDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVR 129
Query: 134 RLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 165
R+L+P G F+ + P +
Sbjct: 130 RVLKPSGKFIMYFTDLRELLPRLKESLVVGQK 161
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTK 100
+ VLD+GCG Y H ++ + D+ E + A + +
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCYEQKAIE 100
Query: 101 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145
+ ++ + S + ++ + ++ L+ G F++S
Sbjct: 101 DIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 34/175 (19%)
Query: 15 THFHDGADKY--------ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL---L 63
F ++ + AL+ + + D+GCG L +
Sbjct: 17 CDFFSNMERQGPGSPEVTLKALSFIDNLTEKS--------LIADIGCGTGGQTMVLAGHV 68
Query: 64 SHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTK--RLPYPSRSFELAHCSRC 117
+ + + D I G+ + + + LP+ + +L S
Sbjct: 69 TGQVTGL-----DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW-SEG 122
Query: 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP--ENRRIWNAMYDLLKSM 170
I + L E + L+ GGY S + + E W Y + ++
Sbjct: 123 AI-YNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTI 176
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 5e-07
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 10/121 (8%)
Query: 48 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 105
+LDVG G + +L S H I + + ++ A + T L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL-----EPATRLVELARQTHPSVTFHHGTITDLSDS 99
Query: 106 SRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAM 163
+ + + + + L+ L + GG + S + +P + A
Sbjct: 100 PKRWAGLLAWYS-LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAY 158
Query: 164 Y 164
Sbjct: 159 R 159
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-06
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 27/153 (17%)
Query: 19 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPND 76
D + L L+R+L P + VL+ GCG A A D
Sbjct: 33 DPELTFDLWLSRLLT-PQTR---------VLEAGCGHGPDAARFGPQAARWAAY-----D 77
Query: 77 VHENQIQFALERGIPSTLGVLGTK-RLPYPSRS-FELAHCSRCRIDWLQRDGILLLELDR 134
++ A + + K LP + F L R + L
Sbjct: 78 FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVIL-------RLPE 130
Query: 135 LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 167
L P +F+Y P + R+ +D++
Sbjct: 131 LAAPDAHFLYVGPRLNVPEVP-ERLAAVGWDIV 162
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHE 79
K I+ ++ +F + + VLD G G + + + ++ +
Sbjct: 3 KTIIRQPQLYRFLKYCNESNLDKT-VLDCGAGGDLPPLSIFVEDGYKTYGI-----EISD 56
Query: 80 NQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELD 133
Q++ A + ++LP+ S + I ++++ + + E+
Sbjct: 57 LQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT-IFHMRKNDVKEAIDEIK 115
Query: 134 RLLRPGGYFVYS 145
R+L+PGG +
Sbjct: 116 RVLKPGGLACIN 127
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 48 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 105
+LD GCG G YL HD++ D+ I +A + + V
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQDFPEARWVVGDLSVDQIS 104
Query: 106 SRSFELAHCSRCRIDWLQRDGIL--LLELDRLLRPGGYFVYSSPEAYAHDPEN 156
F+L + + +L DG L + R L G V +
Sbjct: 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 15 THFHDGADKYILALARMLKFPSDKLNNGGNIR---NVLDVGCGVASFGAYLL----SHDI 67
+ H +++ L L+ + L++ VL+ GCG+ + L +I
Sbjct: 5 EYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEI 64
Query: 68 IAMSLAPNDVHENQIQFALER----GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDWL 122
++ D+ ++ A E GI + + LP+ SF+ ++ L
Sbjct: 65 TSI-----DISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV-LEHL 118
Query: 123 QRDGILLLELDRLLRPGGYFV-----YSSPEAYAHDPENRRIWNAMYDLLKSM 170
Q L L ++L+PGG + S + + WN + + M
Sbjct: 119 QSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYM 171
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 16 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMS 71
F D A Y ++ ++L++ VLD+GCG + +
Sbjct: 60 AFLD-AGHYQPLRDAIVAQLRERLDDKA--TAVLDIGCGEGYYTHAFADALPEITTFGL- 115
Query: 72 LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLE 131
DV + I+ A +R T V + RLP+ S + I E
Sbjct: 116 ----DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR----IYAPC----KAEE 163
Query: 132 LDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 164
L R+++PGG+ + ++P I+N ++
Sbjct: 164 LARVVKPGGWVITATPGPRHLMELKGLIYNEVH 196
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 29/176 (16%)
Query: 5 GEKINF-----PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFG 59
GE ++F G D D+ + +L S VLDVGCG+
Sbjct: 25 GENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGD--------RVLDVGCGIGKPA 76
Query: 60 AYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKR-LPYPSRSFE 110
L + + + + Q+ A R + L LP+ SF+
Sbjct: 77 VRLATARDVRVTGI-----SISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFD 131
Query: 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIWNAMYD 165
R L E+ R+LRPGG + + + +A
Sbjct: 132 AVWALESLHHMPDRGR-ALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRA 186
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 30/176 (17%)
Query: 13 GGTHFHDG-------ADKYILALARMLKFPSDKLNNGGNIR---NVLDVGCGVASFGAYL 62
GG H G D+ A R ++ + +L G ++ LD+G G +L
Sbjct: 41 GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFL 100
Query: 63 LSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKR-LPYPSRSFEL-- 111
+ I +++AP Q + E + L G+ +P S++
Sbjct: 101 VRKFGVSIDCLNIAP-----VQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW 155
Query: 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIWNAMYDL 166
+ + + + E R+L+P G + P + D + + L
Sbjct: 156 SQDAFLHSPDKLK---VFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 16/159 (10%)
Query: 10 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DI 67
+ G + I + ++ + LN + D+G G + L + +
Sbjct: 5 YNSIGKQYSQTRVPDIRIVNAII----NLLNLPKGSV-IADIGAGTGGYSVALANQGLFV 59
Query: 68 IAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 126
A+ + Q A+ + G L P +S + I
Sbjct: 60 YAV-----EPSIVMRQQAVVHPQVEWFTGYAE--NLALPDKSVDGVISILA-IHHFSHLE 111
Query: 127 ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 165
E+ R++R G + + A + +++
Sbjct: 112 KSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 46 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 103
VLD+G G + +L +++ + D + ++ A E+G+ + + LP
Sbjct: 56 CRVLDLGGGTGKWSLFLQERGFEVVLV-----DPSKEMLEVAREKGVKNVVEAKAED-LP 109
Query: 104 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWN 161
+PS +FE + +++ E+ R+L P G + + + + + W+
Sbjct: 110 FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWD 169
Query: 162 AMYDLLK 168
+ LK
Sbjct: 170 QITRFLK 176
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 17/142 (11%)
Query: 46 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 103
+ VLD+GC + GA + + + + + A E+ LG + T +P
Sbjct: 34 KEVLDIGCSSGALGAAIKENGTRVSGI-----EAFPEAAEQAKEKLDHVVLGDIETMDMP 88
Query: 104 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAM 163
Y F+ ++ L ++ ++ ++ G + S P N + +
Sbjct: 89 YEEEQFDCVIFGDV-LEHLFDPWAVIEKVKPYIKQNGVILASIP--------NVSHISVL 139
Query: 164 YDLLKS-MCWKIVSKKDQTVIW 184
LL + D+T I
Sbjct: 140 APLLAGNWTYTEYGLLDKTHIR 161
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 9e-06
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 48 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 105
+L + G +L S +++ A+ + + Q A E+G+ T
Sbjct: 33 ILCLAEGEGRNACFLASLGYEVTAVDQSSVGL-AKAKQLAQEKGVKITTVQSNLADFDIV 91
Query: 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWNAM 163
+ ++E C + R L ++ + L+PGG F+ +PE ++ + + +
Sbjct: 92 ADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLL 150
Query: 164 YD 165
Sbjct: 151 PK 152
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 59/424 (13%), Positives = 118/424 (27%), Gaps = 124/424 (29%)
Query: 23 KYILALARMLKFPSDKLNNGGNIRNVLD--VGCG----VAS------------FGAYLLS 64
+ L L + L +L N+ ++D +G G F + L+
Sbjct: 135 QPYLKLRQALL----ELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 65 HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124
+ +P V E + + T + + RI +Q
Sbjct: 189 ---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-------------RIHSIQA 232
Query: 125 DGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTV 182
EL RLL+ Y + +N + WNA +L C +++ + + V
Sbjct: 233 ------ELRRLLKSKPY-----ENCLLVLLNVQNAKAWNAF-NL---SCKILLTTRFKQV 277
Query: 183 IWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWP 242
+ + ++ L PD ++L K + L P
Sbjct: 278 TDFLSAATTTHISLDH-HSMTL-----TPDEVKSLL---------LKYLDCRPQDL---P 319
Query: 243 ARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFR---NVMDMNSNL 299
+ PR + + E + + W D WK + NV++
Sbjct: 320 REVLTTNPRR--LSIIAESIRDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 300 GGFAA-ALKDKDVWVMNVAPVRMSARLKII----------------YDRGLIGTVHDWCE 342
F ++ + P + L +I + L+ E
Sbjct: 373 KMFDRLSVFPPSAHI----P---TILLSLIWFDVIKSDVMVVVNKLHKYSLV--EKQPKE 423
Query: 343 SFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLR---PEGFVIIRDKSSIINYI 399
S + P Y L ++E + +++ + + + + Y
Sbjct: 424 STISIPSIYLELKV-----KLENEY-ALHRSIVDHYNIPKTFDSDDLIPPYLD----QYF 473
Query: 400 RKFI 403
I
Sbjct: 474 YSHI 477
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 48 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR 107
+L+VG G + L + + + E + R +T + LP+P
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGV-----EPSEAMLAVGRRRAPEATWVRAWGEALPFPGE 94
Query: 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 143
SF++ +++++ +LLE R+LRPGG V
Sbjct: 95 SFDVVLLFTT-LEFVEDVERVLLEARRVLRPGGALV 129
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 32/169 (18%)
Query: 13 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIA 69
G + G + + ++ + VLD+G G+ Y+
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS--------KVLDIGSGLGGGCMYINEKYGAHTHG 83
Query: 70 MSLAPNDVHENQIQFALERGIPS---TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 126
+ D+ N + A ER + +P +F+L + D +
Sbjct: 84 I-----DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYS----RDAILALS 134
Query: 127 I-----LLLELDRLLRPGGYFVYS----SPEAYAHDPENRRIWNAMYDL 166
+ L + + L+P G + + + + D + Y L
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 14/169 (8%)
Query: 25 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQF 84
I + + L+ + N LD G G+ LL + + D+ E+ +
Sbjct: 60 INSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLP--LFREVDMVDITEDFLVQ 117
Query: 85 ALERGIPSTLGVL-----GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL-ELDRLLRP 138
A V G + S+++ + L LRP
Sbjct: 118 AKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 177
Query: 139 GGYFVYS---SPEAYAHDPENRRI---WNAMYDLLKSMCWKIVSKKDQT 181
G V + E D + + + + ++ S +++++ Q
Sbjct: 178 NGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE 226
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 48 VLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 105
++D GCG + YLL + + D++ ++ E+ S + + + P
Sbjct: 21 IVDYGCGNGFYCKYLLEFATKLYCI-----DINVIALKEVKEK-FDSVITL--SDPKEIP 72
Query: 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIW 160
S + + + ++ E+ R+L+ G + + P + R+
Sbjct: 73 DNSVDFILFANS-FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMD 129
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS 106
+++G G F L I + + E + A +RG+ G + LP
Sbjct: 50 RGVEIGVGTGRFAVPL--KIKIGV-----EPSERMAEIARKRGVFVLKGTA--ENLPLKD 100
Query: 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 166
SF+ A I ++ L E R+L+ GGY + + +
Sbjct: 101 ESFDFA-LMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159
Query: 167 LKSMCW 172
K+ +
Sbjct: 160 YKNARF 165
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 46 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL---GTK 100
VLD+GCG L + + + D + A G +
Sbjct: 54 ERVLDLGCGEGWLLRALADRGIEAVGV-----DGDRTLVDAARAAGAGEVHLASYAQLAE 108
Query: 101 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145
+ ++L C+ + LL + LL PGG V
Sbjct: 109 AKVPVGKDYDLI-CANFALLHQDIIE-LLSAMRTLLVPGGALVIQ 151
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-05
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 13/148 (8%)
Query: 17 FHDGADKY-------ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL--LSHDI 67
A Y ++ + ++ G L++G G L +
Sbjct: 5 LLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRY 64
Query: 68 IAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDWLQRDG 126
IA+ + + + A + V + +P P S +
Sbjct: 65 IALDADAAMLEVFRQKIA-GVDRKVQV-VQADARAIPLPDESVHGVIVVHL-WHLVPDWP 121
Query: 127 ILLLELDRLLRPGGYFVYSSPEAYAHDP 154
+L E R+L+PGG + +A A
Sbjct: 122 KVLAEAIRVLKPGGALLEGWDQAEASPE 149
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 9e-05
Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 13/147 (8%)
Query: 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLG---VLGTKRL 102
LD G G+ LL+ + + + ++ ++ A +G + +
Sbjct: 95 SRALDCGAGIGRITKNLLTK--LYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 103 PYPSRSFELAHCSRCRIDWLQRDGILLL-ELDRLLRPGGYFV----YSSPEAYAHDPENR 157
P +++L I D + + L P GY S+ + + D E+
Sbjct: 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDS 212
Query: 158 RIWNAMYDLLKSMC---WKIVSKKDQT 181
+ + + ++V + Q
Sbjct: 213 SLTRSDIHYKRLFNESGVRVVKEAFQE 239
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 48 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPY 104
+L++GCG +L+ D+ A D A R G P
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRRLGRP---VRTMLFHQLD 98
Query: 105 PSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWN 161
+++ C + + RD + +L + R L+PGG F S + R +N
Sbjct: 99 AIDAYDAVWAHAC-LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN 157
Query: 162 AM 163
Sbjct: 158 YP 159
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 48 VLDVGCG--VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPY 104
VLD+G G + + I + V FA E+G+ + GT + LP+
Sbjct: 25 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPF 83
Query: 105 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIWN 161
P SF++ C R + E+ R+L+ G F+ + +PE DP N
Sbjct: 84 PDDSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE----DPVLDEFVN 138
Query: 162 AM 163
+
Sbjct: 139 HL 140
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 32/142 (22%)
Query: 48 VLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-- 99
VLD+GCG YL S +I + D+ +NQ++ A + G+
Sbjct: 87 VLDLGCG-TGRDVYLASKLVGEHGKVIGV-----DMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 100 -----------------KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 142
+ P S ++ C + L E+ R+LR GG
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVIS-NCVCNLSTNKLALFKEIHRVLRDGGEL 199
Query: 143 VYSSPEAYAHDPENRRIWNAMY 164
+S A E + +Y
Sbjct: 200 YFSDVYADRRLSEAAQQDPILY 221
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 37 DKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTL 94
++L G +VL++ G + +L + A+ D I A G+ +
Sbjct: 39 ERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTAL-----DGSAEMIAEAGRHGLDNVE 93
Query: 95 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFV 143
P R ++ + + + D + + PGG
Sbjct: 94 FRQQDLFDWTPDRQWDAVFFAHW-LAHVPDDRFEAFWESVRSAVAPGGVVE 143
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 18/140 (12%)
Query: 42 GGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK- 100
G + ++DVGCG + + + +D+ I+ A S
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 101 ------------RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YS 145
+ ++ C W + LR G Y+
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVEC-AHWFDFE-KFQRSAYANLRKDGTIAIWGYA 151
Query: 146 SPEAYAHDPENRRIWNAMYD 165
P + + + Y
Sbjct: 152 DPIFPDYPEFDDLMIEVPYG 171
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 48 VLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL------GVLGT 99
++D CG + +L +I + DV ++ ++ A + + + G++
Sbjct: 60 LIDFACGNGTQTKFLSQFFPRVIGL-----DVSKSALEIAAKENTAANISYRLLDGLVPE 114
Query: 100 KRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFV 143
+ S + R + + L L LL G
Sbjct: 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 444 | |||
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.71 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.65 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.63 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.61 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.61 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.61 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.6 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.6 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.6 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.59 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.59 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.59 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.58 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.58 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.58 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.58 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.58 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.57 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.56 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.56 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.56 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.55 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.54 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.54 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.54 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.54 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.53 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.53 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.53 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.53 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.53 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.53 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.52 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.51 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.51 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.51 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.51 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.5 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.5 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.5 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.49 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.49 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.49 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.48 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.48 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.48 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.47 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.46 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.46 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.46 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.45 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.45 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.44 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.44 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.44 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.43 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.43 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.43 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.43 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.42 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.42 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.41 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.4 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.4 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.4 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.39 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.39 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.39 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.38 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.38 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.37 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.37 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.36 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.36 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.35 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.35 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.35 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.35 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.34 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.34 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.34 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.33 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.32 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.32 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.32 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.32 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.32 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.3 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.3 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.29 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.29 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.29 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.28 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.28 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.28 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.27 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.27 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.27 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.26 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.26 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.26 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.26 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.26 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.25 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.25 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.25 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.25 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.25 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.24 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.24 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.24 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.24 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.24 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.23 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.23 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.23 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.23 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.23 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.22 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.22 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.22 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.22 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.21 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.21 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.21 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.21 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.2 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.19 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.19 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.19 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.19 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.18 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.18 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.18 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.17 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.16 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.16 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.15 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.15 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.15 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.13 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.13 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.13 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.12 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.11 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.1 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.1 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.1 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.09 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.09 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.09 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.09 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.09 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.09 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.09 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.08 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.08 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.08 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.07 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.07 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.07 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.07 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.06 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.06 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.06 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.05 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.04 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.04 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.03 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.03 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.03 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.03 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.03 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.02 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.02 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.02 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.01 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.01 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.0 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.0 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.99 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.99 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.99 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.99 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.98 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.98 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.97 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.96 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.96 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.95 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.95 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.95 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.94 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.94 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.93 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.93 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.92 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.92 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.91 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.91 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.91 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.91 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.91 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.9 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.9 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.9 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.9 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.89 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.88 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.87 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.87 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.85 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.85 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.85 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.84 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.84 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.83 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.83 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.82 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.81 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.81 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.8 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.8 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.8 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.8 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.79 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.79 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.78 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.78 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.78 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.76 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.75 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.74 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.72 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.71 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.71 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.68 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.67 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.67 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.61 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.59 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.56 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.47 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.44 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.44 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.43 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.39 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.37 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.31 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.28 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.2 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.2 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.2 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.16 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.15 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.13 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.1 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.09 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.06 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.0 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.95 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.95 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.92 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.88 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.81 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.8 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.8 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.78 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.75 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.74 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.72 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.71 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.63 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.63 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 97.54 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.53 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.52 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.51 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.5 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.39 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.37 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.36 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.35 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.34 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.3 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 97.27 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 97.2 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 97.17 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 97.13 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 97.06 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.02 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.99 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 96.99 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 96.95 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.91 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.9 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 96.83 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 96.81 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 96.81 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 96.78 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 96.75 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.73 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 96.71 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 96.69 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 96.68 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 96.68 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 96.67 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 96.67 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 96.66 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 96.65 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 96.63 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 96.63 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 96.61 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 96.55 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 96.54 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 96.54 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 96.54 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 96.54 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 96.53 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 96.52 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 96.5 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 96.49 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 96.49 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 96.43 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 96.43 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 96.42 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 96.39 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 96.37 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 96.32 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 96.31 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 96.29 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 96.28 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 96.28 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 96.27 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 96.26 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 96.25 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 96.22 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 96.21 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 96.21 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 96.2 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 96.15 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.14 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 96.12 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 96.12 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 96.08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 96.03 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 96.03 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 96.02 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 96.01 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 96.0 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 95.99 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 95.97 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 95.97 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 95.97 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 95.93 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 95.91 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 95.91 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 95.91 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 95.88 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 95.86 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 95.84 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 95.83 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 95.79 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 95.79 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.79 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 95.71 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 95.6 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 95.55 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 95.54 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 95.5 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 95.5 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 95.49 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 95.43 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 95.41 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 95.36 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 95.32 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 95.31 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 95.31 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 95.29 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 95.29 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 95.27 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 95.25 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 95.19 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 95.03 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.01 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 94.95 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 94.95 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 94.94 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 94.89 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.85 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 94.83 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 94.82 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 94.82 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 94.7 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 94.66 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 94.61 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 94.6 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 94.59 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.59 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 94.59 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 94.47 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 94.46 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.43 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 94.4 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 94.23 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 94.06 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 93.96 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 93.77 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 93.75 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 93.63 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 93.55 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 93.35 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 93.02 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 92.92 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 92.87 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 92.84 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 92.55 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 92.51 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 92.51 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 92.5 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 92.46 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 92.43 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 92.4 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 92.39 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 92.31 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 92.17 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 92.13 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 92.02 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 92.0 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 91.92 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 91.88 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 91.81 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 91.71 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 91.61 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 91.54 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 91.54 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 91.34 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.29 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 91.17 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 91.16 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 91.04 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 90.86 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 90.78 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 90.68 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 90.67 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 90.61 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 90.46 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 90.38 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 90.12 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 90.06 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 89.85 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 89.8 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 89.75 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 89.71 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 89.68 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 89.6 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 89.53 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 89.38 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 89.36 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 89.33 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 89.19 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 89.04 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 88.85 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 88.8 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 88.67 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 88.53 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 88.46 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 88.36 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 88.16 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 88.1 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 88.08 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 88.01 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 87.89 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 87.83 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.75 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 87.61 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 87.53 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 87.45 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 87.28 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 87.28 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 87.24 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 87.13 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 86.94 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 86.74 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 86.65 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 86.59 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 86.47 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 86.15 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 86.12 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 85.95 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 85.75 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 85.73 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 85.65 |
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-18 Score=169.10 Aligned_cols=213 Identities=10% Similarity=0.056 Sum_probs=135.8
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++. .++|+|+++.++..+.. .+...+.++.+.+.|...++++ ++||+|+|+. +++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~-~l~ 100 (284)
T 3gu3_A 24 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPYDSEFLEGDATEIELN-DKYDIAICHA-FLL 100 (284)
T ss_dssp CEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHH-HHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES-CGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHhcCCceEEEEcchhhcCcC-CCeeEEEECC-hhh
Confidence 48999999999999999874 57788777765544432 2223345788999999988885 6999999998 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCC-----CC-CChhhHH---HHHHHHHHHHhcCeEEEeeecceeEeeccCchh
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEA-----YA-HDPENRR---IWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNS 191 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~-----~~-~~~~~~~---~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~ 191 (444)
+.++...+++++.++|||||++++.++.+ .. ..+.... ....+..+... .
T Consensus 101 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 159 (284)
T 3gu3_A 101 HMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFES---------------------D 159 (284)
T ss_dssp GCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHH---------------------H
T ss_pred cCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHH---------------------H
Confidence 88999999999999999999999988772 10 0000000 01111111111 0
Q ss_pred hHhhcCCCCCCCcccCCCCcchhhhhcccc----cccccccccccccCccccCCC--C-----CCCCCCCCccc---cCC
Q 013393 192 CYLKRVPGSRPPLCSSDDDPDVTWNVLMKA----CISPYSAKMHHEKGTGLVPWP--A-----RLTAPPPRLEE---VGV 257 (444)
Q Consensus 192 c~~~~~~~~~p~lc~~~~~~~~awy~~l~~----ci~~~p~~~~~~~~~~~~~wP--~-----rL~~~p~~~~~---~g~ 257 (444)
............ ........++|..++. ...++| ...|| + +|+..+-+... +++
T Consensus 160 ~~~~~~~~~~~~--~l~~~l~~aGF~~v~~~~~~~~~~~~----------~~~~~~d~~~l~~~l~~~G~~~~~~~~~~~ 227 (284)
T 3gu3_A 160 TQRNGKDGNIGM--KIPIYLSELGVKNIECRVSDKVNFLD----------SNMHHNDKNDLYQSLKEEGIAGDPGDKQQF 227 (284)
T ss_dssp HHHTCCCTTGGG--THHHHHHHTTCEEEEEEECCCCEEEC----------TTCCSHHHHHHHHHHHHTTTTCCCCCHHHH
T ss_pred hhhhcccccHHH--HHHHHHHHcCCCeEEEEEcCCccccC----------CCCChHHHHHHHHHHHhccccCCcccHHHH
Confidence 000000000000 0012344566766665 344445 56777 3 45554443322 344
Q ss_pred ChhHHHhhHhhHHHHHHHHHHHhhhhccCCceeEEEecc
Q 013393 258 TTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMN 296 (444)
Q Consensus 258 ~~~~f~~~~~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~ 296 (444)
+...+++ +|..+++..|++.+++.+++.++|-+..+-
T Consensus 228 ~~~l~~~--g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 264 (284)
T 3gu3_A 228 VERLIAR--GLTYDNALAQYEAELRFFKALHLHSSLVYA 264 (284)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHHHHHHHHCCTTCCEEEC
T ss_pred HHHHHHc--cccHHHHHHHHHHHHHHHHHhccchhhhhc
Confidence 4455554 789999999999999999999999887764
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-16 Score=146.96 Aligned_cols=131 Identities=14% Similarity=0.212 Sum_probs=96.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||||||+|.++..+++. .++++|+++.++..+... +.+.+ .++.+...|...+|+++++||+|+|+. +++|.
T Consensus 39 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~-~l~~~ 116 (260)
T 1vl5_A 39 EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF-IEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHHF 116 (260)
T ss_dssp CEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES-CGGGC
T ss_pred CEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcCCCceEEEEecHHhCCCCCCCEEEEEEhh-hhHhc
Confidence 48999999999999999875 577777777665444432 22233 468899999999999999999999998 58888
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhH-----------------HHHHHHHHHHHhcCeEEEeeec
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR-----------------RIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~-----------------~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++...+|+++.++|||||+++++++..... +... ....++.+++++.||+++....
T Consensus 117 ~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 189 (260)
T 1vl5_A 117 PNPASFVSEAYRVLKKGGQLLLVDNSAPEN-DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHC 189 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEEBCSS-HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcCCCCC-HHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 999999999999999999999975432111 1100 0123677888889998766544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=143.88 Aligned_cols=154 Identities=21% Similarity=0.348 Sum_probs=107.8
Q ss_pred cccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--
Q 013393 16 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI-- 90 (444)
Q Consensus 16 ~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~-- 90 (444)
.+........+.+.+.+++ .++ .+|||||||+|.++..+++. .++++|+++.++..+... +...+.
T Consensus 41 ~~~~~~~~~~~~l~~~~~~-----~~~---~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~ 111 (273)
T 3bus_A 41 SVDDATDRLTDEMIALLDV-----RSG---DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR-ATAAGLAN 111 (273)
T ss_dssp CHHHHHHHHHHHHHHHSCC-----CTT---CEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-HHHTTCTT
T ss_pred CHHHHHHHHHHHHHHhcCC-----CCC---CEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHH-HHhcCCCc
Confidence 3444445555555555542 233 38999999999999999863 577777776555444322 222233
Q ss_pred CcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC-hhhH---H--------
Q 013393 91 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD-PENR---R-------- 158 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~-~~~~---~-------- 158 (444)
++.+...|...+|+++++||+|+|.. +++|.++...+++++.++|||||+++++++...... .... .
T Consensus 112 ~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T 3bus_A 112 RVTFSYADAMDLPFEDASFDAVWALE-SLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGV 190 (273)
T ss_dssp TEEEEECCTTSCCSCTTCEEEEEEES-CTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTC
T ss_pred ceEEEECccccCCCCCCCccEEEEec-hhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCc
Confidence 58888999999999889999999998 588888999999999999999999999875432111 1110 0
Q ss_pred ----HHHHHHHHHHhcCeEEEeeec
Q 013393 159 ----IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 159 ----~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.-.++.+++++.||+++....
T Consensus 191 ~~~~~~~~~~~~l~~aGf~~~~~~~ 215 (273)
T 3bus_A 191 LSLGGIDEYESDVRQAELVVTSTVD 215 (273)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCCHHHHHHHHHHcCCeEEEEEE
Confidence 014678889999998876554
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=142.37 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=97.2
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
+|||||||+|.++..+++. .++|+|++ +.+++.|+++.. ++.+...|...+ +++++||+|+|.. +++|.+
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~-~l~~~~ 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFNDITCVEAS-----EEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTH-VLEHID 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESC-----HHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEES-CGGGCS
T ss_pred cEEEECCCCCHHHHHHHHhCCcEEEEeCC-----HHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhh-HHHhhc
Confidence 7999999999999999875 56666555 555566666644 788888888877 4678999999998 588889
Q ss_pred cHHHHHHHHH-hhcCCCeEEEEEcCCCCCCC-----------------hhh-------HHHHHHHHHHHHhcCeEEEeee
Q 013393 124 RDGILLLELD-RLLRPGGYFVYSSPEAYAHD-----------------PEN-------RRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 124 d~~~~L~ei~-rvLkPGG~lvis~p~~~~~~-----------------~~~-------~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+...+|+++. ++|||||+++++.+...... ... ...-.++.+++++.||+++...
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 9999999999 99999999999886642110 000 0023478899999999988775
Q ss_pred c
Q 013393 179 D 179 (444)
Q Consensus 179 ~ 179 (444)
.
T Consensus 198 ~ 198 (250)
T 2p7i_A 198 G 198 (250)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=145.38 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=109.3
Q ss_pred cccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--C
Q 013393 16 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--I 90 (444)
Q Consensus 16 ~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~ 90 (444)
.+........+.+.+.++.. ..+.++ .+|||||||+|.++..+++. .++|+|+++.++..+.... ...+ .
T Consensus 58 ~~~~~~~~~~~~l~~~l~~~-~~~~~~---~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~ 132 (297)
T 2o57_A 58 EIREASLRTDEWLASELAMT-GVLQRQ---AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYN-NQAGLAD 132 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TCCCTT---CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHHTCTT
T ss_pred chHHHHHHHHHHHHHHhhhc-cCCCCC---CEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HhcCCCc
Confidence 34444455555666655100 012233 38999999999999999874 5777777766554444322 2223 3
Q ss_pred CcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCCh-h-hHH----------
Q 013393 91 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP-E-NRR---------- 158 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~-~-~~~---------- 158 (444)
++.+...|...+|+++++||+|+|.. +++|.++...+|+++.++|||||+++++++....... . ...
T Consensus 133 ~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (297)
T 2o57_A 133 NITVKYGSFLEIPCEDNSYDFIWSQD-AFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM 211 (297)
T ss_dssp TEEEEECCTTSCSSCTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSC
T ss_pred ceEEEEcCcccCCCCCCCEeEEEecc-hhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCC
Confidence 58899999999999999999999998 4777789999999999999999999998754221111 1 111
Q ss_pred -HHHHHHHHHHhcCeEEEeeec
Q 013393 159 -IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 159 -~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.-..+.+++++.||+++....
T Consensus 212 ~~~~~~~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 212 GSLGLYRSLAKECGLVTLRTFS 233 (297)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCeEEEEEE
Confidence 123677889999998876643
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=140.17 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=99.9
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++. .++|+|+++.++..+... +...+ .++.+...|...+|+++++||+|+|+. +++
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~-~~~ 125 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRN-ARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG-AIY 125 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS-CGG
T ss_pred CEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHH-HHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC-Cce
Confidence 48999999999999999885 678888877665544432 23334 348899999999998889999999998 477
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCC--CChhhHHHH----------HHHHHHHHhcCeEEEeee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRRIW----------NAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~--~~~~~~~~~----------~~l~~l~~~~gf~~v~~~ 178 (444)
+. +...+++++.++|||||+++++++.... ........| .++.++++++||+++...
T Consensus 126 ~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 126 NI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp GT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred ec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 76 8899999999999999999998764322 122222333 378889999999988654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=138.30 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=101.6
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
.+|||+|||+|.++..+++.. ..+.+.|+++.+++.++++.. ++.+...|...++++ ++||+|+|+. ++++.++
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~-~l~~~~~ 121 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTY-AFHHLTD 121 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEES-CGGGSCH
T ss_pred CeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECc-chhcCCh
Confidence 389999999999999998862 234444555666677777654 788889999999888 8999999998 5888888
Q ss_pred HHH--HHHHHHhhcCCCeEEEEEcCCCCCCChh-----------------hHH-----HHHHHHHHHHhcCeEEEeeecc
Q 013393 125 DGI--LLLELDRLLRPGGYFVYSSPEAYAHDPE-----------------NRR-----IWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 125 ~~~--~L~ei~rvLkPGG~lvis~p~~~~~~~~-----------------~~~-----~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
... +++++.++|||||+++++++........ ... .-.++.++++++||+++.....
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 122 DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc
Confidence 876 9999999999999999987553211100 000 1257889999999998877765
Q ss_pred eeEee
Q 013393 181 TVIWA 185 (444)
Q Consensus 181 ~~~w~ 185 (444)
...|.
T Consensus 202 ~~~w~ 206 (220)
T 3hnr_A 202 HFVWV 206 (220)
T ss_dssp SSEEE
T ss_pred ceEEE
Confidence 55554
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-16 Score=149.14 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecC
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 99 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~ 99 (444)
..+.+.+.+.++. ....+|||||||+|.++..+++. .|+|+|++ +.+++.++++. ++.+.+.|.
T Consensus 20 ~~~~~~l~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~~-~~~~~~~d~ 85 (261)
T 3ege_A 20 IRIVNAIINLLNL--------PKGSVIADIGAGTGGYSVALANQGLFVYAVEPS-----IVMRQQAVVHP-QVEWFTGYA 85 (261)
T ss_dssp HHHHHHHHHHHCC--------CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSC-----HHHHHSSCCCT-TEEEECCCT
T ss_pred HHHHHHHHHHhCC--------CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCC-----HHHHHHHHhcc-CCEEEECch
Confidence 3455666666643 22348999999999999999874 45555554 55556555544 888999999
Q ss_pred ccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 100 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 100 ~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+|+++++||+|+|+. +++|.++...+++++.++|| ||++++.++.
T Consensus 86 ~~~~~~~~~fD~v~~~~-~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 86 ENLALPDKSVDGVISIL-AIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp TSCCSCTTCBSEEEEES-CGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred hhCCCCCCCEeEEEEcc-hHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 99999999999999998 47778999999999999999 9988887654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-15 Score=139.10 Aligned_cols=128 Identities=16% Similarity=0.276 Sum_probs=98.1
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|.++..+++. .++|+|+++..+..+..+ +...+. ++.+...|...+|+++++||+|+|+. ++++
T Consensus 49 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 126 (257)
T 3f4k_A 49 KIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN-AVKANCADRVKGITGSMDNLPFQNEELDLIWSEG-AIYN 126 (257)
T ss_dssp EEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES-CSCC
T ss_pred eEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChhhCCCCCCCEEEEEecC-hHhh
Confidence 8999999999999999874 678888877666544432 333343 37889999999999889999999998 4777
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCC--ChhhHHHH----------HHHHHHHHhcCeEEEee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENRRIW----------NAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~--~~~~~~~~----------~~l~~l~~~~gf~~v~~ 177 (444)
. +...+++++.++|||||+++++++..... .......| .++.++++++||+++..
T Consensus 127 ~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 127 I-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp C-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred c-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 6 78999999999999999999987543221 12222233 46788999999988764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=136.67 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=98.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||||||+|.++..+++. .++++|+++.++..+..........++.+...|...+|+++++||+|+|+. .++|.+
T Consensus 23 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~ 101 (239)
T 1xxl_A 23 HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRY-AAHHFS 101 (239)
T ss_dssp CEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEES-CGGGCS
T ss_pred CEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECC-chhhcc
Confidence 38999999999999999875 578888877666544433322222468888999999999889999999998 477778
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhH-----------------HHHHHHHHHHHhcCeEEEeeec
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR-----------------RIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~-----------------~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+...++.++.++|||||++++.++..... +... ....++.+++++.||+.+....
T Consensus 102 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~ 173 (239)
T 1xxl_A 102 DVRKAVREVARVLKQDGRFLLVDHYAPED-PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173 (239)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECBCSS-HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEcCCCCC-hhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEe
Confidence 99999999999999999999976442111 1100 0124677888889998765543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=141.00 Aligned_cols=128 Identities=22% Similarity=0.278 Sum_probs=98.5
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .|+|+|+ ++.+++.++++. .++.+...|...+|+++++||+|+|+. ++
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 130 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKYGAHTHGIDI-----CSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRD-AI 130 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEES-----CHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEES-CG
T ss_pred CEEEEECCCCCHHHHHHHHHcCCEEEEEeC-----CHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHH-HH
Confidence 48999999999999999874 4555555 556667777664 578889999999999899999999988 58
Q ss_pred ccc--ccHHHHHHHHHhhcCCCeEEEEEcCCCCC---CChhhHH----------HHHHHHHHHHhcCeEEEeeec
Q 013393 120 DWL--QRDGILLLELDRLLRPGGYFVYSSPEAYA---HDPENRR----------IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 120 ~~~--~d~~~~L~ei~rvLkPGG~lvis~p~~~~---~~~~~~~----------~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+|. ++...+++++.++|||||+++++++.... ....... .-.++.+++++.||+.+....
T Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 131 LALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 887 78889999999999999999998753221 1111100 124788899999998877654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=143.06 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=78.0
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFEL 111 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDl 111 (444)
++++. +|||||||+|.++..|+++ .|+|+|+++.++..++.+..... ..++.+...|+..+|++ .||+
T Consensus 68 ~~~~~---~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~ 142 (261)
T 4gek_A 68 VQPGT---QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASM 142 (261)
T ss_dssp CCTTC---EEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEE
T ss_pred CCCCC---EEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--cccc
Confidence 45555 8999999999999999874 46777766655544443222211 34678889999888874 6999
Q ss_pred EEeccccccccccH--HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 112 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 112 I~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
|+|+. ++||+++. ..+|++++|+|||||+|+++++.
T Consensus 143 v~~~~-~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 143 VVLNF-TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp EEEES-CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ceeee-eeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence 99988 58886544 47899999999999999998654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-15 Score=140.45 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEE
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTL 94 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~ 94 (444)
......+.+.+.+.+ .++ .+|||||||+|.++..+++. .++++|+++.++..+.. .+...+. ++.+
T Consensus 20 ~~~~~~~~l~~~~~~-----~~~---~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~v~~ 90 (256)
T 1nkv_A 20 FTEEKYATLGRVLRM-----KPG---TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVHF 90 (256)
T ss_dssp CCHHHHHHHHHHTCC-----CTT---CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEE
T ss_pred CCHHHHHHHHHhcCC-----CCC---CEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHhcCCCcceEE
Confidence 345566666666643 333 38999999999999998863 67888887766655443 2333343 5889
Q ss_pred EEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC--hhhH-----------HHHH
Q 013393 95 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENR-----------RIWN 161 (444)
Q Consensus 95 ~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~--~~~~-----------~~~~ 161 (444)
...|...+++ +++||+|+|.. ++++.++...+|+++.++|||||+++++++...... .... ....
T Consensus 91 ~~~d~~~~~~-~~~fD~V~~~~-~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (256)
T 1nkv_A 91 IHNDAAGYVA-NEKCDVAACVG-ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLP 168 (256)
T ss_dssp EESCCTTCCC-SSCEEEEEEES-CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHH
T ss_pred EECChHhCCc-CCCCCEEEECC-ChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHH
Confidence 9999988887 78999999988 477778899999999999999999999875432111 1101 1124
Q ss_pred HHHHHHHhcCeEEEe
Q 013393 162 AMYDLLKSMCWKIVS 176 (444)
Q Consensus 162 ~l~~l~~~~gf~~v~ 176 (444)
++.+++++.||+.+.
T Consensus 169 ~~~~~l~~aGf~~~~ 183 (256)
T 1nkv_A 169 GLVGAFDDLGYDVVE 183 (256)
T ss_dssp HHHHHHHTTTBCCCE
T ss_pred HHHHHHHHCCCeeEE
Confidence 677888888887654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-16 Score=147.07 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=93.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC--CCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l--p~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..+++. .++|+| +++.+++.++++ +.+...|...+ ++++++||+|+|+. +++|
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD-----~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~-~l~~ 113 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGIESIGVD-----INEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISH-FVEH 113 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTCCEEEEC-----SCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEES-CGGG
T ss_pred CeEEEEeCCCCHHHHHHHhCCCcEEEEE-----CCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECC-chhh
Confidence 38999999999999999874 455555 455666777665 67777787664 78889999999998 5888
Q ss_pred cc--cHHHHHHHHHhhcCCCeEEEEEcCCCCCCCh--------hh--HHHHHHHHHHHHhcCeEEEeee
Q 013393 122 LQ--RDGILLLELDRLLRPGGYFVYSSPEAYAHDP--------EN--RRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 122 ~~--d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~--------~~--~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.+ +...+++++.++|||||+++++.+....... .. ...-.++.+++++.||+++...
T Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 77 4489999999999999999998876432100 00 0012578899999999877554
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-15 Score=138.41 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=100.2
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~- 123 (444)
+|||+|||+|.++..+++. .++|+| +++.+++.++++..++.+...|...+++++++||+|+|+. +++|.+
T Consensus 44 ~vLDiGcG~G~~~~~l~~~~~~v~gvD-----~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~ 117 (203)
T 3h2b_A 44 VILDVGSGTGRWTGHLASLGHQIEGLE-----PATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWY-SLIHMGP 117 (203)
T ss_dssp CEEEETCTTCHHHHHHHHTTCCEEEEC-----CCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEES-SSTTCCT
T ss_pred eEEEecCCCCHHHHHHHhcCCeEEEEe-----CCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehh-hHhcCCH
Confidence 7999999999999999886 455554 4566777787777789999999999998889999999998 477765
Q ss_pred -cHHHHHHHHHhhcCCCeEEEEEcCCCCCCCh-------hhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 124 -RDGILLLELDRLLRPGGYFVYSSPEAYAHDP-------ENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 124 -d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~-------~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+...+++++.++|||||+++++.+....... .......++.+++++.||+++....
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 7889999999999999999998754321000 0011245788999999999887654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-15 Score=139.42 Aligned_cols=127 Identities=25% Similarity=0.312 Sum_probs=98.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..+++. .++++| +++.+++.++++ ..++.+...|...+++++++||+|+|.. +++|
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD-----~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 128 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGYKAVGVD-----ISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAIN-SLEW 128 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEE-----SCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEES-CTTS
T ss_pred CeEEEEcCCCCHHHHHHHHcCCeEEEEE-----CCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcC-hHhh
Confidence 38999999999999999986 355554 455666677665 4578888999999999899999999998 5888
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhh--H-----------HHHHHHHHHHHhcCeEEEeee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN--R-----------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~--~-----------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.++...+++++.++|||||+++++.+......... . ..-.++.+++++.||+++...
T Consensus 129 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 129 TEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 89999999999999999999999875432111100 0 012378899999999988764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-15 Score=135.34 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=95.6
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|.++..+++. .++++|+++..+..+.... ...+ .++.+...|...+++++++||+|+|+. +++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNI-ADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG-SVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECBTTBCSSCTTCEEEEEEES-CGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HhccccCceEEEEcCHHHCCCCcccccEEEECc-hHhh
Confidence 8999999999999999875 5666666655544443222 2223 368899999999999999999999998 5777
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh---------------------hHHHHHHHHHHHHhcCeEEEeee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE---------------------NRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~---------------------~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.++...+++++.++|||||+++++++........ ....-.++.+++++.||+.+...
T Consensus 124 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 124 WEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred ccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 7999999999999999999999986442210000 00112578889999999765543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-16 Score=148.38 Aligned_cols=96 Identities=26% Similarity=0.370 Sum_probs=79.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||||||+|.++..|++. .|+|+|++ +.|++.|++ ..++.+.+.+++.+|+++++||+|+|+. ++||.
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s-----~~ml~~a~~-~~~v~~~~~~~e~~~~~~~sfD~v~~~~-~~h~~- 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFERVHAVDPG-----EAQIRQALR-HPRVTYAVAPAEDTGLPPASVDVAIAAQ-AMHWF- 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCSEEEEEESC-----HHHHHTCCC-CTTEEEEECCTTCCCCCSSCEEEEEECS-CCTTC-
T ss_pred CCEEEEcCCCCHHHHHHHHhCCEEEEEeCc-----HHhhhhhhh-cCCceeehhhhhhhcccCCcccEEEEee-ehhHh-
Confidence 38999999999999999985 46666555 555555543 4578999999999999999999999998 47885
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
+.+++++++.|+|||||.|++.....
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 68899999999999999999876443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=134.32 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=100.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|+++.++..+..........++.+...|...+++++++||+|+|+. +++
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 117 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF-TFH 117 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEES-CGG
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeeh-hhh
Confidence 38999999999999888763 578888887766555544433333468899999999998889999999998 577
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC----ChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH----DPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~----~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+.++...+++++.++|||||++++++...... .......-.++.+++++.||+++...
T Consensus 118 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 118 ELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp GCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred hcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 77899999999999999999999976442211 11111134578899999999987654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=141.37 Aligned_cols=133 Identities=18% Similarity=0.338 Sum_probs=100.2
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..+++. .++++|+++..+..+..........++.+...|...+++++++||+|+|+. ++++
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 117 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF-VLEH 117 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES-CGGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec-hhhh
Confidence 48999999999999998864 578888877666554433322223468888999999999899999999998 5888
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCC-----CCChhhHHHH-----------------HHHHHHHHhcCeEEEeeec
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAY-----AHDPENRRIW-----------------NAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~-----~~~~~~~~~~-----------------~~l~~l~~~~gf~~v~~~~ 179 (444)
.++...+++++.++|||||++++.++... .........| ..+..+++++||+.+....
T Consensus 118 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~ 197 (276)
T 3mgg_A 118 LQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEP 197 (276)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEee
Confidence 89999999999999999999999875421 1111111112 3677789999998887654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-15 Score=139.81 Aligned_cols=129 Identities=16% Similarity=0.256 Sum_probs=99.2
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..+|||+|||+|.++..+++. .++++|++ +.+++.++++ ..++.+...|...+++++++||+|+|+. ++
T Consensus 45 ~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 118 (253)
T 3g5l_A 45 QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS-----ERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSL-AL 118 (253)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEES-CG
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCEEEEEECC-----HHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEch-hh
Confidence 348999999999999999885 45566555 5555666665 3578899999999999889999999998 58
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCC---------CChhh----------------------------HHHHHH
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA---------HDPEN----------------------------RRIWNA 162 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~---------~~~~~----------------------------~~~~~~ 162 (444)
++.++...+++++.++|||||+++++.+.+.. ..... .....+
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 198 (253)
T 3g5l_A 119 HYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTT 198 (253)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHH
T ss_pred hhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHH
Confidence 88899999999999999999999997543210 00000 003467
Q ss_pred HHHHHHhcCeEEEeeec
Q 013393 163 MYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 163 l~~l~~~~gf~~v~~~~ 179 (444)
+.++++++||+++....
T Consensus 199 ~~~~l~~aGF~~~~~~e 215 (253)
T 3g5l_A 199 YIQTLLKNGFQINSVIE 215 (253)
T ss_dssp HHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHcCCeeeeeec
Confidence 88999999999887654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=141.22 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=99.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..++++ .|+|+|+++.++..+..+ +...+. ++.+...|...+|+++++||+|+|+. +++
T Consensus 119 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~ 196 (312)
T 3vc1_A 119 DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRR-ARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE-STM 196 (312)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES-CGG
T ss_pred CEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhcCCCCCCCEeEEEECC-chh
Confidence 48999999999999999874 677887777665444432 233343 58899999999999889999999998 477
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC---hhhHH-----------HHHHHHHHHHhcCeEEEeeecc
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---PENRR-----------IWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~---~~~~~-----------~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
+. +...+++++.++|||||++++.++...... ..... .-.++.+++++.||+++.....
T Consensus 197 ~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 197 YV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp GS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred hC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 76 689999999999999999999774432211 11111 1247889999999998877653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-15 Score=139.79 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=95.1
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
..+|||||||+|.++..+++. .++++|+++.+ ++.++++ ..++.+...|...+++++++||+|+|..
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~-----~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDF-----LVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 154 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHH-----HHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHH-----HHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence 458999999999999998875 46666666544 4444443 2346788888888888888999999998
Q ss_pred ccccccccHH--HHHHHHHhhcCCCeEEEEEcCCCCC-----C-ChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 117 CRIDWLQRDG--ILLLELDRLLRPGGYFVYSSPEAYA-----H-DPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 117 ~~l~~~~d~~--~~L~ei~rvLkPGG~lvis~p~~~~-----~-~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++++.++.. .+++++.++|||||+++++++.... . .......-.++.+++++.||+++....
T Consensus 155 -~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 155 -VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp -CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred -hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 577777744 8999999999999999997653221 0 000011345788999999998877654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-15 Score=134.94 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=93.8
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
+|||+|||+|.++..+++. .++++|+ ++.+++.+++.+ .++.+...|...+ +++++||+|+|+. +++|.+
T Consensus 49 ~vLdiG~G~G~~~~~l~~~~~~v~~~D~-----s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~-~l~~~~ 121 (218)
T 3ou2_A 49 DVLELASGTGYWTRHLSGLADRVTALDG-----SAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAH-WLAHVP 121 (218)
T ss_dssp EEEEESCTTSHHHHHHHHHSSEEEEEES-----CHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEES-CGGGSC
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEEEeC-----CHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEec-hhhcCC
Confidence 8999999999999999875 4556555 455666666666 5788889998887 7789999999998 588877
Q ss_pred cH--HHHHHHHHhhcCCCeEEEEEcCCCCCCCh-----------------hh--------HHHHHHHHHHHHhcCeEEEe
Q 013393 124 RD--GILLLELDRLLRPGGYFVYSSPEAYAHDP-----------------EN--------RRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 124 d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~~-----------------~~--------~~~~~~l~~l~~~~gf~~v~ 176 (444)
+. ..+++++.++|||||+++++++....... .. ...-.++.++++++||++..
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 201 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSV 201 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEe
Confidence 75 78999999999999999998654310000 00 00225788999999998655
Q ss_pred ee
Q 013393 177 KK 178 (444)
Q Consensus 177 ~~ 178 (444)
..
T Consensus 202 ~~ 203 (218)
T 3ou2_A 202 DE 203 (218)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-15 Score=143.34 Aligned_cols=143 Identities=11% Similarity=0.172 Sum_probs=99.8
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++. .|+|+|+++.++..+.... ...+. ++.+...|...+ +++||+|+|+. +++
T Consensus 74 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~-~~~ 148 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMF-DEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG-AFE 148 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHH-HHSCCSSCEEEEECCGGGC---CCCCSEEEEES-CGG
T ss_pred CEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECCHHHc---CCCccEEEEcc-hHH
Confidence 38999999999999999874 5777777766554444322 22333 578888888766 68999999998 577
Q ss_pred ccccH---------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhh--------------------------HHHHHHHHH
Q 013393 121 WLQRD---------GILLLELDRLLRPGGYFVYSSPEAYAHDPEN--------------------------RRIWNAMYD 165 (444)
Q Consensus 121 ~~~d~---------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~--------------------------~~~~~~l~~ 165 (444)
+.+++ ..+++++.++|||||++++.+.......... ...-.++.+
T Consensus 149 ~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~ 228 (302)
T 3hem_A 149 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDY 228 (302)
T ss_dssp GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHH
T ss_pred hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHH
Confidence 77544 7999999999999999999764422110000 001236788
Q ss_pred HHHhcCeEEEeeecceeEeeccCchhhH
Q 013393 166 LLKSMCWKIVSKKDQTVIWAKPISNSCY 193 (444)
Q Consensus 166 l~~~~gf~~v~~~~~~~~w~k~l~~~c~ 193 (444)
++++.||+++........|.+++..+..
T Consensus 229 ~l~~aGf~~~~~~~~~~~y~~tl~~w~~ 256 (302)
T 3hem_A 229 YSSNAGWKVERYHRIGANYVPTLNAWAD 256 (302)
T ss_dssp HHHHHTCEEEEEEECGGGHHHHHHHHHH
T ss_pred HHHhCCcEEEEEEeCchhHHHHHHHHHH
Confidence 9999999988877655555555444433
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-15 Score=139.75 Aligned_cols=97 Identities=14% Similarity=0.299 Sum_probs=77.6
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
..+|||+|||+|.++..+++. .++++|+++ .+++.++++. .++.+...|...++++ ++||+|+|+.
T Consensus 45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~- 117 (234)
T 3dtn_A 45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE-----KMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSAL- 117 (234)
T ss_dssp SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCH-----HHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeC-
Confidence 358999999999999999874 466666655 4555555542 2788889999998887 8999999998
Q ss_pred cccccccHH--HHHHHHHhhcCCCeEEEEEcCC
Q 013393 118 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 118 ~l~~~~d~~--~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++++.++.. .+++++.++|||||+++++++.
T Consensus 118 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 118 SIHHLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 577777665 5999999999999999998754
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.5e-15 Score=138.61 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=95.4
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
..+|||||||+|.++..+++. .++++|+++ .+++.++++. .++.+...|...+++++++||+|+|+. +
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 167 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVK-----HMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW-T 167 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCH-----HHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES-C
T ss_pred CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCH-----HHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcc-h
Confidence 348999999999999988764 366776665 4445555543 457888889888998889999999998 4
Q ss_pred cccc--ccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-------ChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 119 IDWL--QRDGILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 119 l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-------~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++|. ++...+++++.++|||||+++++++..... .......-.++.+++++.||+++....
T Consensus 168 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 168 AIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 7777 457799999999999999999987421110 000011235788999999998876643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=131.40 Aligned_cols=128 Identities=20% Similarity=0.290 Sum_probs=95.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc----CC------CcEEEEecCccCCCCCCCccEEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI------PSTLGVLGTKRLPYPSRSFELAH 113 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~----~~------~~~~~~~d~~~lp~~~~sFDlI~ 113 (444)
.+|||+|||+|.++..+++. .++++|++ +.+++.++++ +. ++.+...|...+++++++||+|+
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGYSVTGIDIN-----SEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCCeEEEEECC-----HHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 38999999999999999886 45566555 4555555553 22 36788889988998889999999
Q ss_pred eccccccccccHH---HHHHHHHhhcCCCeEEEEEcCCCCCCChhh--------------------------------HH
Q 013393 114 CSRCRIDWLQRDG---ILLLELDRLLRPGGYFVYSSPEAYAHDPEN--------------------------------RR 158 (444)
Q Consensus 114 ~~~~~l~~~~d~~---~~L~ei~rvLkPGG~lvis~p~~~~~~~~~--------------------------------~~ 158 (444)
|+. ++++.++.. .+++++.++|||||+++++++......... ..
T Consensus 107 ~~~-~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 107 MQA-FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp EES-CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred Ecc-hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 998 577777777 899999999999999999865432111110 01
Q ss_pred HHHHHHHHHHhcCeEEEeeec
Q 013393 159 IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 159 ~~~~l~~l~~~~gf~~v~~~~ 179 (444)
.-.++.++++++||+++....
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 235788899999998887654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=140.56 Aligned_cols=139 Identities=12% Similarity=0.166 Sum_probs=96.0
Q ss_pred CeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++ ..|+|+|+++.++..+.... .+.+ .++.+...|...+| ++||+|+|.. +++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~-~l~ 140 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLRSKRVLLAGWEQFD---EPVDRIVSIG-AFE 140 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCSCEEEEESCGGGCC---CCCSEEEEES-CGG
T ss_pred CEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCCCeEEEECChhhCC---CCeeEEEEeC-chh
Confidence 3899999999999999884 25677766665443333222 2223 36788888887765 7899999998 577
Q ss_pred cc--ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCCh---------hhH-----------------HHHHHHHHHHHhcCe
Q 013393 121 WL--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDP---------ENR-----------------RIWNAMYDLLKSMCW 172 (444)
Q Consensus 121 ~~--~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~---------~~~-----------------~~~~~l~~l~~~~gf 172 (444)
|. ++...+++++.++|||||+++++++....... ... ..-.++.+++++.||
T Consensus 141 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf 220 (287)
T 1kpg_A 141 HFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGF 220 (287)
T ss_dssp GTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTC
T ss_pred hcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCc
Confidence 76 67889999999999999999997654221000 000 012477888999999
Q ss_pred EEEeeecceeEeeccCc
Q 013393 173 KIVSKKDQTVIWAKPIS 189 (444)
Q Consensus 173 ~~v~~~~~~~~w~k~l~ 189 (444)
+++........|.+++.
T Consensus 221 ~~~~~~~~~~~y~~~~~ 237 (287)
T 1kpg_A 221 TVTRVQSLQPHYAKTLD 237 (287)
T ss_dssp EEEEEEECHHHHHHHHH
T ss_pred EEEEEEeCcHhHHHHHH
Confidence 98887654444444433
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-15 Score=135.54 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=86.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHH------------cCCCcEEEEecCccCCCCC-CCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE------------RGIPSTLGVLGTKRLPYPS-RSFE 110 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e------------~~~~~~~~~~d~~~lp~~~-~sFD 110 (444)
.+|||+|||+|..+..|++. .|+|+|+|+.++..++.+.... ...++.+.+.|+..+++++ ++||
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fD 103 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCA 103 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEE
T ss_pred CEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCEE
Confidence 38999999999999999875 4667766665554333211100 1347889999999998765 7999
Q ss_pred EEEecccccccccc--HHHHHHHHHhhcCCCeEEEEEcCCCCC---CChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 111 LAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYA---HDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 111 lI~~~~~~l~~~~d--~~~~L~ei~rvLkPGG~lvis~p~~~~---~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+|+++.+ +++.+. ...+++++.|+|||||++++.+..... ..+.....-.++.+++++ ||++....
T Consensus 104 ~v~~~~~-l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 104 AFYDRAA-MIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp EEEEESC-GGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred EEEECcc-hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEec
Confidence 9999874 555543 357999999999999984443211100 000000123467777877 99876544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=137.28 Aligned_cols=98 Identities=15% Similarity=0.316 Sum_probs=81.5
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
..+|||||||+|.++..+++. .++|+|++ +.+++.++++..++.+...|...+|+ +++||+|+|+. +++|.
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~-~l~~~ 130 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDNA-----ATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA-MLHWV 130 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES-CGGGC
T ss_pred CCEEEEecCCCCHHHHHHHhCCCeEEEEECC-----HHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc-hhhhC
Confidence 348999999999999999874 45566554 55666666666678899999998887 57999999998 58888
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
++...+++++.++|||||+++++.+..
T Consensus 131 ~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 131 KEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999999999999999999987653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=134.50 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=81.9
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++..++.+...|...++ ++++||+|+|+. +++|
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~ 107 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD-----DMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANA-VFQW 107 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTTSEEEEESCH-----HHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEES-CGGG
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeC-chhh
Confidence 48999999999999988763 677776665 455666666678899999998888 778999999998 5888
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.++...+++++.++|||||+++++.+..
T Consensus 108 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 108 VPDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp STTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 8999999999999999999999987653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=137.85 Aligned_cols=133 Identities=19% Similarity=0.266 Sum_probs=97.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCC-CCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP-YPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp-~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++. .++|+|+++.++..+.... ...+ .++.+...|...++ +++++||+|+|+. +++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~-~l~ 147 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAA-EAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA-VLE 147 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEES-CGG
T ss_pred CEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEEcCHHHhhhhcCCCceEEEECc-hhh
Confidence 48999999999999999886 5677776665544333222 2223 35788899988887 7789999999998 588
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-------------------C------ChhhHHHHHHHHHHHHhcCeEEE
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA-------------------H------DPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-------------------~------~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
|.++...+++++.++|||||++++..+.... . .......-.++.++++++||+++
T Consensus 148 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~ 227 (285)
T 4htf_A 148 WVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIM 227 (285)
T ss_dssp GCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEE
T ss_pred cccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCcee
Confidence 8899999999999999999999997653110 0 00000112578899999999988
Q ss_pred eeecc
Q 013393 176 SKKDQ 180 (444)
Q Consensus 176 ~~~~~ 180 (444)
.....
T Consensus 228 ~~~~~ 232 (285)
T 4htf_A 228 GKTGV 232 (285)
T ss_dssp EEEEE
T ss_pred eeeeE
Confidence 77653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=133.86 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=93.3
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++. ++.+...|...++ ++++||+|+|+. ++++..
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 116 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGFDVDATDGSP-----ELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHA-CLLHVP 116 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECS-CGGGSC
T ss_pred CcEEEECCCCCHHHHHHHHcCCeEEEECCCH-----HHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecC-chhhcC
Confidence 38999999999999999886 456665554 4555555542 4566778888888 778999999998 477766
Q ss_pred --cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh------hHHHHHHHHHHHHhcC-eEEEeeec
Q 013393 124 --RDGILLLELDRLLRPGGYFVYSSPEAYAHDPE------NRRIWNAMYDLLKSMC-WKIVSKKD 179 (444)
Q Consensus 124 --d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~------~~~~~~~l~~l~~~~g-f~~v~~~~ 179 (444)
+...+++++.++|||||+++++.+........ ....-.++.+++++.| |+++....
T Consensus 117 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 117 RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 66799999999999999999986543211000 0112357889999999 98877653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=135.56 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=78.9
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++ ..++.+...|...+++++++||+|+|+. ++
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 114 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARGYRYIALDADA-----AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVH-LW 114 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTTCEEEEEESCH-----HHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEES-CG
T ss_pred CEEEEeCCcCCHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECC-ch
Confidence 48999999999999999875 456665554 455555544 4578899999999998889999999998 58
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
||.++...+++++.++|||||+++++
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 88889999999999999999999987
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=133.08 Aligned_cols=133 Identities=18% Similarity=0.253 Sum_probs=92.7
Q ss_pred ecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHH
Q 013393 9 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL 86 (444)
Q Consensus 9 ~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~ 86 (444)
.+|.....+........+.+.+.+.. .+++ ..+|||+|||+|.++..+++. .++++|+++..+..+... +.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~---~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~ 81 (227)
T 1ve3_A 9 VFPTYTDINSQEYRSRIETLEPLLMK---YMKK---RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREY-AK 81 (227)
T ss_dssp HCSTTTCTTSHHHHHHHHHHHHHHHH---SCCS---CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HH
T ss_pred HhhhhhcccHHHHHHHHHHHHHHHHH---hcCC---CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HH
Confidence 45555555555444444444443321 2223 348999999999999999876 577777776555444422 23
Q ss_pred HcCCCcEEEEecCccCCCCCCCccEEEecccc-ccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 87 ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR-IDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 87 e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~-l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+.++.+...|...+++++++||+|+|+.+. +++..+...+++++.++|||||++++..+.
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 82 SRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp HTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 33577899999998888888899999998731 333456779999999999999999997654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=145.33 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=98.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc----C----CCcEEEEecCccC------CCCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----G----IPSTLGVLGTKRL------PYPS 106 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~----~----~~~~~~~~d~~~l------p~~~ 106 (444)
.+|||||||+|.++..+++. .|+|+|+++.++..+..+..... + .++.+...|...+ ++++
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~ 164 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPD 164 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCT
T ss_pred CEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCC
Confidence 48999999999999888763 57888777765544443322210 3 5788999998887 8889
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhH--------------HHHHHHHHHHHhcCe
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR--------------RIWNAMYDLLKSMCW 172 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~--------------~~~~~l~~l~~~~gf 172 (444)
++||+|+|+. ++++.++...+|+++.++|||||+|+++++.......... ....++.+++++.||
T Consensus 165 ~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF 243 (383)
T 4fsd_A 165 SSVDIVISNC-VCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGF 243 (383)
T ss_dssp TCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTC
T ss_pred CCEEEEEEcc-chhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCC
Confidence 9999999988 5888899999999999999999999998654332211111 112688899999999
Q ss_pred EEEeee
Q 013393 173 KIVSKK 178 (444)
Q Consensus 173 ~~v~~~ 178 (444)
+.+...
T Consensus 244 ~~v~~~ 249 (383)
T 4fsd_A 244 RDVRLV 249 (383)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 866543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-15 Score=151.67 Aligned_cols=162 Identities=11% Similarity=0.076 Sum_probs=109.0
Q ss_pred CeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHH
Q 013393 6 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 6 ~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a 85 (444)
+|..+.+....+......+.+.+.+.+.. .+ ..+|||||||+|.++..++++.. .+.+.|+++.+++.|
T Consensus 77 ~y~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a 145 (416)
T 4e2x_A 77 VYPYHSSGSSVMREHFAMLARDFLATELT-----GP---DPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKA 145 (416)
T ss_dssp TCCCCGGGCHHHHHHHHHHHHHHHHTTTC-----SS---SCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHH
T ss_pred CccCcCcCCHHHHHHHHHHHHHHHHHhCC-----CC---CCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHH
Confidence 44444444444444445555555444432 22 33899999999999999998632 444556667777888
Q ss_pred HHcCCCcEE---EEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCC---------CCC
Q 013393 86 LERGIPSTL---GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY---------AHD 153 (444)
Q Consensus 86 ~e~~~~~~~---~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~---------~~~ 153 (444)
++++.+... ...+...+++++++||+|+|+. +++|.++...+++++.++|||||++++..+... ...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~-vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 224 (416)
T 4e2x_A 146 REKGIRVRTDFFEKATADDVRRTEGPANVIYAAN-TLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIF 224 (416)
T ss_dssp HTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEES-CGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCS
T ss_pred HHcCCCcceeeechhhHhhcccCCCCEEEEEECC-hHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhh
Confidence 877554332 1233455667778999999998 588889999999999999999999999876410 000
Q ss_pred hhh--HHHHHHHHHHHHhcCeEEEeeec
Q 013393 154 PEN--RRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 154 ~~~--~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
... ......+..++++.||+++....
T Consensus 225 ~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 225 DEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp TTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 000 11235789999999998876643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=127.75 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=89.7
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC-----CCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-----IPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~-----~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||||||+|.++..+++. .++|+|+++.++..+..+.....- .++.+...|...+++++++||+|+|+.
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 110 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIE 110 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEES
T ss_pred CEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEHH
Confidence 48999999999999999874 577777776555444432221111 167888889877887778999999998
Q ss_pred ccccccccH--HHHHHHHHhhcCCCeEEEEEcCCCC----CCCh------------hhHHHH-HHHHHHHHhcCeEEEee
Q 013393 117 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY----AHDP------------ENRRIW-NAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 117 ~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~----~~~~------------~~~~~~-~~l~~l~~~~gf~~v~~ 177 (444)
++++.++. ..+++++.++|||||.++.+....+ ...+ .....+ .-+.+++++.||++...
T Consensus 111 -~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 111 -VIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp -CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred -HHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEE
Confidence 57877755 6899999999999997665432211 0000 011111 13348899999977654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=132.79 Aligned_cols=98 Identities=27% Similarity=0.451 Sum_probs=80.6
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..+|||||||+|.++..+++. .++++|+ ++.+++.++++.. ++.+...|...+++++++||+|+|+. ++
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 117 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDL-----SEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSL-AL 117 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEES-CG
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcC-----CHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEec-cc
Confidence 348999999999999999875 3555554 5566667766633 57888889888888889999999998 57
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++.++...+++++.++|||||+++++.+.
T Consensus 118 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 118 HYVEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 88889999999999999999999997643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-14 Score=124.70 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=94.8
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccH
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
.+|||+|||+|.++..+++.. ..+.+.|+++.+++.++++..++.+...| +++++++||+|+|+. ++++.++.
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~-~l~~~~~~ 91 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFAN-SFHDMDDK 91 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEES-CSTTCSCH
T ss_pred CeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEcc-chhcccCH
Confidence 389999999999999998863 25555566677777777777778888777 777889999999998 57888899
Q ss_pred HHHHHHHHhhcCCCeEEEEEcCCCCCCC----hhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 126 GILLLELDRLLRPGGYFVYSSPEAYAHD----PENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 126 ~~~L~ei~rvLkPGG~lvis~p~~~~~~----~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
..+++++.++|||||++++.+....... ......-.++.++++ ||+++....
T Consensus 92 ~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 92 QHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence 9999999999999999999864422110 111112346777777 999887654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=132.57 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=78.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||||||+|.++..+++. .++|+ |+++.+++.|+++..++.+...|...+++ +++||+|+|+..+++|..
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~~v~gv-----D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFGTVEGL-----ELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSSEEEEE-----ESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred CcEEEeCCcCCHHHHHHHHcCCeEEEE-----ECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence 48999999999999999886 34555 45566677777776788999999998887 689999999874577764
Q ss_pred ---cHHHHHHHHHhhcCCCeEEEEEc
Q 013393 124 ---RDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 124 ---d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+...+++++.++|||||++++..
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 55689999999999999999963
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=129.29 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=96.5
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccH
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
.+|||+|||+|.++..+++. +++|+++ .+++.++++ ++.+...|...+++++++||+|+|.. ++++.++.
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~--~~vD~s~-----~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~~ 118 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK--IGVEPSE-----RMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVT-TICFVDDP 118 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC--EEEESCH-----HHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEES-CGGGSSCH
T ss_pred CcEEEeCCCCCHHHHHHHHH--hccCCCH-----HHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcc-hHhhccCH
Confidence 38999999999999999876 6776665 455666665 67788889888898888999999998 58888999
Q ss_pred HHHHHHHHhhcCCCeEEEEEcCCCCCCCh---------------hhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 126 GILLLELDRLLRPGGYFVYSSPEAYAHDP---------------ENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 126 ~~~L~ei~rvLkPGG~lvis~p~~~~~~~---------------~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
..+++++.++|+|||+++++.+....... .......++.+++++.||+++....
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 99999999999999999998765321100 0001235788999999998876643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=126.20 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=89.2
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC------CcEEEEecCccCCCCCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI------PSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~------~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+..+.. ..+. ++.+...|....+.++++||+|+|+
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 109 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD-RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI 109 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT-TCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH-HhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence 48999999999999999874 57777777655544432221 1121 6788888887777777899999999
Q ss_pred cccccccccH--HHHHHHHHhhcCCCeEEEEEcCCCC-------C----CCh-----hhHHHH-HHHHHHHHhcCeEEEe
Q 013393 116 RCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY-------A----HDP-----ENRRIW-NAMYDLLKSMCWKIVS 176 (444)
Q Consensus 116 ~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~-------~----~~~-----~~~~~~-~~l~~l~~~~gf~~v~ 176 (444)
. +++|.++. ..+++++.++|||||+++++....+ . +.. .....+ ..+.+++++.||++..
T Consensus 110 ~-~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 110 E-VIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQF 188 (217)
T ss_dssp S-CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEE
T ss_pred H-HHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEE
Confidence 8 57777755 7999999999999997776543211 0 000 011111 2345889999998765
Q ss_pred e
Q 013393 177 K 177 (444)
Q Consensus 177 ~ 177 (444)
.
T Consensus 189 ~ 189 (217)
T 3jwh_A 189 Q 189 (217)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=139.31 Aligned_cols=103 Identities=8% Similarity=0.106 Sum_probs=69.9
Q ss_pred CCeEEEECCCcchHHHHH----hh--CCc----eEEEcCcccchHHHHHHHHHcCC-CcEEE--EecCccCC------CC
Q 013393 45 IRNVLDVGCGVASFGAYL----LS--HDI----IAMSLAPNDVHENQIQFALERGI-PSTLG--VLGTKRLP------YP 105 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~L----a~--~~V----~gvdis~~dis~a~i~~a~e~~~-~~~~~--~~d~~~lp------~~ 105 (444)
..+|||||||+|.++..+ +. ..+ +++|.++.++..+..+.+...+. ++.+. ..+.+.++ ++
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 348999999999766543 22 133 66666655554443222211122 33443 33444433 56
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++||+|+|+. ++||.+|+..+|+++.|+|||||++++....
T Consensus 133 ~~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 133 LQKWDFIHMIQ-MLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp CCCEEEEEEES-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCceeEEEEee-eeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 78999999999 5899999999999999999999999997543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=123.73 Aligned_cols=125 Identities=16% Similarity=0.234 Sum_probs=96.5
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc--c
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL--Q 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~--~ 123 (444)
.+|||+|||+|.++..+++.. .++.+.|+++.+++.++++..++.+...|...+++++++||+|+|+..++++. +
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~ 124 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAED 124 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHH
T ss_pred CeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChH
Confidence 389999999999999998862 13444455566667777776778899999888888888999999984357765 3
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+...++.++.++|+|||++++..+..... ...++.+++++.||+++....
T Consensus 125 ~~~~~l~~~~~~l~~~G~l~~~~~~~~~~------~~~~~~~~l~~~Gf~~~~~~~ 174 (195)
T 3cgg_A 125 GREPALANIHRALGADGRAVIGFGAGRGW------VFGDFLEVAERVGLELENAFE 174 (195)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEETTSSC------CHHHHHHHHHHHTEEEEEEES
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCCc------CHHHHHHHHHHcCCEEeeeec
Confidence 44789999999999999999977653222 235678889999998876643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=137.36 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=78.9
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC----CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~----~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+|||||||+|.++..+++. .|+++|+++.++..+..+. ...+ .++.+...|...+++ +++||+|+|+..+++
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~ 162 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRL-AEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSIN 162 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHH-HTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHT
T ss_pred cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-hhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccc
Confidence 7999999999999999885 6778877766554443222 2223 568899999999887 689999998866777
Q ss_pred ccc--cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQ--RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~--d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+.. +...+|+++.++|||||+|+++.+.
T Consensus 163 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 163 ELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp TSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 755 3478999999999999999997654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-14 Score=130.06 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=93.8
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC---CCC-CCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYP-SRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l---p~~-~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++.. ..+.+.|+++.+++.++++ .+..+...+...+ ++. +++||+|+|+.+ ++
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~-l~- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFA-LL- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC-CC-
T ss_pred CEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECch-hh-
Confidence 489999999999999998862 1333445556666777776 5566777776665 544 445999999984 66
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh-----------------------hHHHHHHHHHHHHhcCeEEEeee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-----------------------NRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~-----------------------~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..+...+++++.++|||||+++++++........ ......++.++++++||+++...
T Consensus 128 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 207 (227)
T 3e8s_A 128 HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQ 207 (227)
T ss_dssp SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEe
Confidence 6889999999999999999999988654321110 00134688899999999988764
Q ss_pred c
Q 013393 179 D 179 (444)
Q Consensus 179 ~ 179 (444)
.
T Consensus 208 ~ 208 (227)
T 3e8s_A 208 E 208 (227)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=123.08 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=81.7
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-CCCCCccEEEeccccccc--
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW-- 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-~~~~sFDlI~~~~~~l~~-- 121 (444)
+|||+|||+|.++..+++. .|+|+|+++.++..+..+.....-.++.+...+...++ +++++||+|+++...++.
T Consensus 25 ~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~ 104 (185)
T 3mti_A 25 IVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSAD 104 (185)
T ss_dssp EEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC------
T ss_pred EEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcc
Confidence 8999999999999999875 67888888776655554333322246777776666643 457889999987433332
Q ss_pred ------cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 ------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ------~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..+...+++++.++|||||++++.................+....+...+|.+...
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (185)
T 3mti_A 105 KSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLY 166 (185)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEE
T ss_pred hhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEe
Confidence 13345789999999999999999764422111111122223333334445765544
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-14 Score=131.13 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=92.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC------CCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG------IPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~------~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++. .|+|+|+ ++.+++.++++. .++.+...|...++ ++++||+|+|+.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~-----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~- 140 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDI-----SESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYV- 140 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECS-----CHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEES-
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEEC-----CHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEECh-
Confidence 38999999999999999875 3455555 455555555542 24788888988877 456899999988
Q ss_pred cccccc--cHHHHHHHHHhhcCCCeEEEEEcCCCCCCC--hhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 118 RIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 118 ~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~~~~~~--~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++++.+ +...+++++.++|||||++++......... +.......++.+++++.||+++....
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 477766 778999999999999999998664322110 00001235788999999999877643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=126.59 Aligned_cols=120 Identities=18% Similarity=0.295 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEec
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 98 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d 98 (444)
...+.+.+.+.+... . ....+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+.++.+...|
T Consensus 20 ~~~~~~~~~~~l~~~---~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~d 92 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN---N---LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGLKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHHHTT---T---CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEECCC
T ss_pred HHHHHHHHHHHHHHh---C---CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCCCeEEEecc
Confidence 455556666666531 1 12348999999999999999875 4677776665554444322 2234478888999
Q ss_pred CccCCCCCCCccEEEecccccccc---ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 99 TKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 99 ~~~lp~~~~sFDlI~~~~~~l~~~---~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...++++ ++||+|+|+..+++|. ++...+++++.++|||||+++++.+.
T Consensus 93 ~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 8888877 8899999987247776 56779999999999999999996543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-14 Score=137.57 Aligned_cols=99 Identities=11% Similarity=0.183 Sum_probs=75.4
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++. .|+|+|+++.++..+.... .+.+ .++.+...|...+| ++||+|+|.. +++
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~-~l~ 166 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVL-ASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE-AFE 166 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTSCCSSCEEEEESCGGGCC---CCCSEEEEES-CGG
T ss_pred CEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECChHHCC---CCcCEEEEeC-hHH
Confidence 38999999999999998864 5677776665544333222 2223 34788888887775 7899999998 577
Q ss_pred cc--ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 121 WL--QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 121 ~~--~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
|. ++...+++++.++|||||+++++++..
T Consensus 167 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 167 HFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp GTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 76 678899999999999999999987653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.1e-14 Score=136.50 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=92.8
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||||||+|.++..++. ..++++|+++.++..+..+. ...+. ++.+...|...++++ ++||+|+|+. +
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~-~ 196 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLA-AGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG-L 196 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS-S
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECchhcCCcc-CCeEEEEECC-h
Confidence 3899999999999999852 25677776665443333221 12232 278889999999987 8999999988 4
Q ss_pred ccccccHHH---HHHHHHhhcCCCeEEEEEcCCCCC------------CChhh------------------HHHHHHHHH
Q 013393 119 IDWLQRDGI---LLLELDRLLRPGGYFVYSSPEAYA------------HDPEN------------------RRIWNAMYD 165 (444)
Q Consensus 119 l~~~~d~~~---~L~ei~rvLkPGG~lvis~p~~~~------------~~~~~------------------~~~~~~l~~ 165 (444)
++|.++... +++++.++|||||+++++...... ..... ...-.++.+
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence 777667664 799999999999999998733210 00000 012357889
Q ss_pred HHHhcCeEEEeeec
Q 013393 166 LLKSMCWKIVSKKD 179 (444)
Q Consensus 166 l~~~~gf~~v~~~~ 179 (444)
++++.||+++....
T Consensus 277 ~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 277 QLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHTTCEEEEEEC
T ss_pred HHHHCCCEEEEEEc
Confidence 99999999887654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=126.53 Aligned_cols=96 Identities=22% Similarity=0.323 Sum_probs=77.9
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~- 122 (444)
.+|||+|||+|.++..+++. .++++|++ +.+++.++++..++.+...|...+++ +++||+|+|+..+++|.
T Consensus 42 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s-----~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 42 SSLLDVACGTGTHLEHFTKEFGDTAGLELS-----EDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp CEEEEETCTTSHHHHHHHHHHSEEEEEESC-----HHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCC
T ss_pred CeEEEecccCCHHHHHHHHhCCcEEEEeCC-----HHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcC
Confidence 48999999999999999874 46666554 55666777776678899999888887 67899999876567776
Q ss_pred --ccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 123 --QRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 123 --~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
++...+++++.++|||||+++++.+
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 4556899999999999999999754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=125.89 Aligned_cols=99 Identities=22% Similarity=0.368 Sum_probs=78.2
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
..+|||+|||+|.++..+++. +..+.+.|+++.+++.++++. .++.+...|...++ ++++||+|+|+. +++|
T Consensus 52 ~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~ 126 (216)
T 3ofk_A 52 VSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAE-VLYY 126 (216)
T ss_dssp EEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEES-CGGG
T ss_pred CCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEcc-HHHh
Confidence 348999999999999999886 234444455556666666652 36788899988888 678999999998 5888
Q ss_pred cccH---HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 122 LQRD---GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 122 ~~d~---~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.++. ..+++++.++|||||+++++++.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 7776 47799999999999999997654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=125.61 Aligned_cols=97 Identities=26% Similarity=0.403 Sum_probs=81.4
Q ss_pred CeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
.+|||+|||+|.++..+ .. .++++|++ +.+++.++++..++.+...|...+|+++++||+|+|+. +++|.++
T Consensus 38 ~~vLdiG~G~G~~~~~l-~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~ 110 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL-PYPQKVGVEPS-----EAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFT-TLEFVED 110 (211)
T ss_dssp SEEEEETCTTCHHHHHC-CCSEEEEECCC-----HHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEES-CTTTCSC
T ss_pred CeEEEECCCCCHhHHhC-CCCeEEEEeCC-----HHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcC-hhhhcCC
Confidence 48999999999999888 44 56666555 55566666665678888899989999889999999998 5888889
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 125 DGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
...+++++.++|||||+++++++..
T Consensus 111 ~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 111 VERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999999999999999999988764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=131.22 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHH----cCCCcE
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE----RGIPST 93 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e----~~~~~~ 93 (444)
-..+.+.+++.+.. +| .+|||||||+|..+.++++. .++++|+++ .+++.|++ .+.++.
T Consensus 46 e~~~m~~~a~~~~~------~G---~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~-----~~~~~a~~~~~~~~~~~~ 111 (236)
T 3orh_A 46 ETPYMHALAAAASS------KG---GRVLEVGFGMAIAASKVQEAPIDEHWIIECND-----GVFQRLRDWAPRQTHKVI 111 (236)
T ss_dssp GHHHHHHHHHHHTT------TC---EEEEEECCTTSHHHHHHTTSCEEEEEEEECCH-----HHHHHHHHHGGGCSSEEE
T ss_pred HHHHHHHHHHhhcc------CC---CeEEEECCCccHHHHHHHHhCCcEEEEEeCCH-----HHHHHHHHHHhhCCCceE
Confidence 34566666666642 23 38999999999999999875 355665555 44455544 355667
Q ss_pred EEEecCccC--CCCCCCccEEEec----cccccccccHHHHHHHHHhhcCCCeEEEEEcCCC-----CCCChhhHHHH-H
Q 013393 94 LGVLGTKRL--PYPSRSFELAHCS----RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-----YAHDPENRRIW-N 161 (444)
Q Consensus 94 ~~~~d~~~l--p~~~~sFDlI~~~----~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~-----~~~~~~~~~~~-~ 161 (444)
+...+.+.+ ++++++||.|++- ....++..+...+++++.|+|||||+|++..... ..........+ .
T Consensus 112 ~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~ 191 (236)
T 3orh_A 112 PLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEE 191 (236)
T ss_dssp EEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHH
T ss_pred EEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHH
Confidence 777775543 5778999999752 1134556788899999999999999999843110 00011111122 2
Q ss_pred HHHHHHHhcCeEEEee
Q 013393 162 AMYDLLKSMCWKIVSK 177 (444)
Q Consensus 162 ~l~~l~~~~gf~~v~~ 177 (444)
.....+.+.||++...
T Consensus 192 ~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 192 TQVPALLEAGFRRENI 207 (236)
T ss_dssp HTHHHHHHHTCCGGGE
T ss_pred HHHHHHHHcCCeEEEE
Confidence 3455677789975544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=124.39 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=90.2
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccH
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
.+|||||||+|.++..++ ..++++|+++. ++.+...|...+|+++++||+|+|+.+ +|+ .+.
T Consensus 69 ~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~-~~~ 130 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLS-LMG-TNI 130 (215)
T ss_dssp SCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESC-CCS-SCH
T ss_pred CeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehh-ccc-cCH
Confidence 379999999999998885 68999999885 456778888888888899999999884 665 888
Q ss_pred HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 126 GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 126 ~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..+++++.++|+|||+++++++..... .-.++.+++++.||+++...
T Consensus 131 ~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 131 RDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECGGGCS------CHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCCC------CHHHHHHHHHHCCCEEEEEe
Confidence 999999999999999999986543211 23578889999999987754
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=132.76 Aligned_cols=133 Identities=14% Similarity=0.217 Sum_probs=89.2
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc--------------------------------
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-------------------------------- 88 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-------------------------------- 88 (444)
.++|||||||+|.++..+++. .|+|+|+++.++..+..+.....
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 348999999999999999874 57778777655544432211100
Q ss_pred --------------------------CCCcEEEEecCccCC-----CCCCCccEEEeccccccccc------cHHHHHHH
Q 013393 89 --------------------------GIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRIDWLQ------RDGILLLE 131 (444)
Q Consensus 89 --------------------------~~~~~~~~~d~~~lp-----~~~~sFDlI~~~~~~l~~~~------d~~~~L~e 131 (444)
..++.+...|....+ +.+++||+|+|.. +++|+. +...+|++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~-vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLS-LTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEES-CHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEECh-HHHHhhhcCCHHHHHHHHHH
Confidence 035778888865443 5678999999988 465543 56689999
Q ss_pred HHhhcCCCeEEEEEcCCCCC------CChhhHHHH-------HHHHHHHHh--cCeEEEeee
Q 013393 132 LDRLLRPGGYFVYSSPEAYA------HDPENRRIW-------NAMYDLLKS--MCWKIVSKK 178 (444)
Q Consensus 132 i~rvLkPGG~lvis~p~~~~------~~~~~~~~~-------~~l~~l~~~--~gf~~v~~~ 178 (444)
++++|||||+|++...++.. ..+.....+ .++.+++.+ .||+.+...
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~ 267 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELV 267 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEe
Confidence 99999999999997654321 111111122 267778887 899665543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=126.89 Aligned_cols=130 Identities=15% Similarity=0.247 Sum_probs=95.9
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc--CCCCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR--LPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~--lp~~~~sFDlI~~~~~~l~~~ 122 (444)
..+|||+|||+|.++..+++.. ..+.+.|+++.+++.++++. ..+...|... .++++++||+|+|+. +++|.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~v~~~~-~l~~~ 106 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKL--DHVVLGDIETMDMPYEEEQFDCVIFGD-VLEHL 106 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTS--SEEEESCTTTCCCCSCTTCEEEEEEES-CGGGS
T ss_pred CCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC--CcEEEcchhhcCCCCCCCccCEEEECC-hhhhc
Confidence 3489999999999999998762 23444455566667776654 3567777765 667788999999998 57888
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCCCC-------------CCh------h--hHHHHHHHHHHHHhcCeEEEeeecc
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEAYA-------------HDP------E--NRRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~~~-------------~~~------~--~~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
++...++.++.++|+|||+++++.+.... ... . ....-.++.+++++.||+++.....
T Consensus 107 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 107 FDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp SCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 89999999999999999999998765211 000 0 0012357889999999998876553
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=124.00 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=90.2
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc-cc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~-~~ 123 (444)
+|||+|||+|.++..+++. .++++|+++.++..+... ....+.++.+...|...+++++++||+|+|+.+ ++ ..
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQL-AQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHH-HHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cCCHH
Confidence 7999999999999999875 466666665544333322 222355788888998888888899999999653 33 35
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCCCCC-----Ch---hhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEAYAH-----DP---ENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~~~~-----~~---~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+...+++++.++|||||+++++.+..... .+ .....-.++.++++ ||+++....
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEE
Confidence 67799999999999999999987543211 00 11112346777777 998876654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=130.18 Aligned_cols=101 Identities=18% Similarity=0.324 Sum_probs=77.8
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCC-CCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPY-PSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~-~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+..+. ...+ .++.+...|...+++ ++++||+|+|..+ +
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~-l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA-RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS-F 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC-G
T ss_pred CeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCccEEEEECCccccccCCCCCcCEEEECch-h
Confidence 38999999999998888763 5778877776554444222 2222 246888889888888 5789999999884 6
Q ss_pred cc----cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 120 DW----LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 120 ~~----~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
|+ ..+...+++++.++|||||+++++.+.
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 65 466779999999999999999998755
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=126.06 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=76.9
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcc------cchHHHHHHHHHcC--CCcEEEEec---CccCCCCCCCc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPN------DVHENQIQFALERG--IPSTLGVLG---TKRLPYPSRSF 109 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~------dis~a~i~~a~e~~--~~~~~~~~d---~~~lp~~~~sF 109 (444)
.+|||||||+|.++..+++ ..++|+|+++. ++..++.+ ....+ .++.+...| ...+|+++++|
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 123 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNH-LLAGPLGDRLTVHFNTNLSDDLGPIADQHF 123 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHH-HHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHH-HHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence 3899999999999998876 36889999886 55444432 23333 357787777 45667778999
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
|+|+|+. +++|.++...+++.+.++++|||++++.+..
T Consensus 124 D~v~~~~-~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 124 DRVVLAH-SLWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp SEEEEES-CGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred EEEEEcc-chhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 9999998 4777788888777777888889999997644
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=120.76 Aligned_cols=125 Identities=11% Similarity=0.091 Sum_probs=93.1
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .++|+|+++..+..+..+.......++.+...|...++ +++++||+|+++.. .
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~-~ 121 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-D 121 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-C
T ss_pred CeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC-C
Confidence 48999999999999988863 68889888877655554333322247888899988777 77889999999863 4
Q ss_pred cccc--------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 120 DWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 120 ~~~~--------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+|.. ....++.++.++|||||.+++.+.. ......+.+++++.||+.+....
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 122 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--------RGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--------HHHHHHHHHHHHHHTCEEEEEES
T ss_pred CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--------HHHHHHHHHHHHHCCCeeeeccc
Confidence 4422 1257999999999999999997543 12345677788888998776543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=133.55 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=79.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCccCC---CCCCCccEEEec-
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP---YPSRSFELAHCS- 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~lp---~~~~sFDlI~~~- 115 (444)
.+|||||||+|.++..+++. .|+|+|+++.++..+..+..... ..++.+...|...++ +++++||+|+|.
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g 138 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECT
T ss_pred CEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcC
Confidence 48999999999999999886 56777777665544433221111 134667788887777 788999999998
Q ss_pred ccccccccc-------HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~~~d-------~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
. +++|..+ ...+++++.++|||||+++++.++
T Consensus 139 ~-~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 139 N-SFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp T-CGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred h-HHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 5 5888888 889999999999999999998765
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-13 Score=120.62 Aligned_cols=131 Identities=18% Similarity=0.278 Sum_probs=91.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..........++.+...|...+++ +++||+|+|+. ++++.+
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~-~l~~~~ 111 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTV-VLMFLE 111 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEES-CGGGSC
T ss_pred CeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcc-hhhhCC
Confidence 38999999999999999875 577887777666555433322222368888999888888 78999999998 477765
Q ss_pred --cHHHHHHHHHhhcCCCeEEEEEcCCC---CCCChhh--HHHHHHHHHHHHhcCeEEEeeecc
Q 013393 124 --RDGILLLELDRLLRPGGYFVYSSPEA---YAHDPEN--RRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 124 --d~~~~L~ei~rvLkPGG~lvis~p~~---~~~~~~~--~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
+...+++++.++|||||++++..+.. +...... ...-.++.+++++ |+++.....
T Consensus 112 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 112 AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 67899999999999999988754211 1100000 0012356667765 887776554
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-13 Score=131.07 Aligned_cols=99 Identities=12% Similarity=0.188 Sum_probs=79.6
Q ss_pred CCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHH--cCCCcEEEEecCccCCCCC------CCccE
Q 013393 45 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALE--RGIPSTLGVLGTKRLPYPS------RSFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e--~~~~~~~~~~d~~~lp~~~------~sFDl 111 (444)
..+|||||||+|.++..+++ ..|+|+|+++.++..+....... ...++.+.+.|+..+++++ ++||+
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 116 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDM 116 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeE
Confidence 34899999999999999984 25778877776655444332221 1567899999999988777 89999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
|+|+. ++||. +...+++++.++|||||++++.
T Consensus 117 V~~~~-~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 117 ITAVE-CAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEES-CGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeHhh-HHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 99998 58887 9999999999999999999983
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-13 Score=131.57 Aligned_cols=101 Identities=11% Similarity=0.117 Sum_probs=73.2
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCC-------cEEEEecC------ccC--CCCCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP-------STLGVLGT------KRL--PYPSR 107 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~-------~~~~~~d~------~~l--p~~~~ 107 (444)
.+|||||||+|..+..++.. .|+|+|+|+.++..++.+. .+.+.. +.+.+.+. ..+ +++++
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~-~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY-NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred CeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH-HhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 48999999999765555443 5788888887776665433 222322 45666665 333 35678
Q ss_pred CccEEEecccccccc---ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 108 SFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 108 sFDlI~~~~~~l~~~---~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+||+|+|.. ++||. ++...+++++.++|||||+|++++++
T Consensus 129 ~FD~V~~~~-~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 129 KFNIIDWQF-AIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp CEEEEEEES-CGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CeeEEEECc-hHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999999998 47764 45679999999999999999998775
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-13 Score=128.87 Aligned_cols=126 Identities=11% Similarity=0.026 Sum_probs=86.6
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc----------------------CCCcEEEEecCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----------------------GIPSTLGVLGTKR 101 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~----------------------~~~~~~~~~d~~~ 101 (444)
.+|||+|||+|..+..|++. .|+|+|+|+.+ ++.|+++ +.++.+.++|+..
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~-----i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGHTVVGVEISEIG-----IREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTCEEEEECSCHHH-----HHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHH-----HHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 48999999999999999986 46666555544 4444332 2467899999999
Q ss_pred CCCCC-CCccEEEeccccccccc--cHHHHHHHHHhhcCCCeEEEEEcCCCC---CCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 102 LPYPS-RSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAY---AHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 102 lp~~~-~sFDlI~~~~~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~~~---~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
+++++ ++||+|++..+ +++++ +...+++++.++|||||++++.+.... ...+...-.-+++.+++.. +|+++
T Consensus 145 l~~~~~~~FD~V~~~~~-l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGA-LVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp GGGGCCCCEEEEEESSS-TTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred CCcccCCCEEEEEEhhh-hhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 88764 89999998874 55543 345799999999999999975431100 0000000123467778876 58877
Q ss_pred eee
Q 013393 176 SKK 178 (444)
Q Consensus 176 ~~~ 178 (444)
...
T Consensus 223 ~~~ 225 (252)
T 2gb4_A 223 CLE 225 (252)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=129.61 Aligned_cols=98 Identities=20% Similarity=0.427 Sum_probs=79.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||||||+|.++..+++. .++++| +++.+++.++++... .+...|...+++++++||+|+|...+.|+.+
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD-----~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQERGFEVVLVD-----PSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTTTCEEEEEE-----SCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CeEEEeCCCcCHHHHHHHHcCCeEEEEe-----CCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 48999999999999999886 355554 555666666666443 2778888889988899999999876677767
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
+...+++++.++|||||+++++.++.
T Consensus 130 ~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 130 NKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred cHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 88999999999999999999987653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-13 Score=129.59 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=87.9
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc-----------------------------CCCcE
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-----------------------------GIPST 93 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~-----------------------------~~~~~ 93 (444)
.+|||||||+|.++..++.. .|+|+|+++.++..+......+. ..++.
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 136 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVK 136 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEE
T ss_pred ceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhh
Confidence 48999999999887766553 47888888776655442211100 00122
Q ss_pred -EEEecCcc-CCCC---CCCccEEEecccccccc----ccHHHHHHHHHhhcCCCeEEEEEcCCCCC-C--Chh----hH
Q 013393 94 -LGVLGTKR-LPYP---SRSFELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEAYA-H--DPE----NR 157 (444)
Q Consensus 94 -~~~~d~~~-lp~~---~~sFDlI~~~~~~l~~~----~d~~~~L~ei~rvLkPGG~lvis~p~~~~-~--~~~----~~ 157 (444)
+...|... .|++ .++||+|+|+.+ +|++ ++...++++++++|||||+|++++..... + ... ..
T Consensus 137 ~~~~~D~~~~~~~~~~~~~~fD~V~~~~~-l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~ 215 (263)
T 2a14_A 137 RVLKCDVHLGNPLAPAVLPLADCVLTLLA-MECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVA 215 (263)
T ss_dssp EEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCC
T ss_pred eEEeccccCCCCCCccccCCCCEeeehHH-HHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccc
Confidence 67778766 3432 578999999995 6653 45578999999999999999998632110 0 000 00
Q ss_pred HHHHHHHHHHHhcCeEEEeeec
Q 013393 158 RIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 158 ~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
-.-.++.+++++.||+++....
T Consensus 216 ~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 216 LEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCHHHHHHHHHHCCCEEEEEee
Confidence 0234788999999998876654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=113.72 Aligned_cols=117 Identities=14% Similarity=0.024 Sum_probs=87.3
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++.+.......++.+...|........++||+|++... .+
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~-~~- 119 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS-GG- 119 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC-TT-
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC-Cc-
Confidence 38999999999999998874 4788888877665555433332234578888887554433467999998873 33
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
+...+++++.++|||||++++..+. ......+.+.+++.||..
T Consensus 120 --~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 120 --MLEEIIDAVDRRLKSEGVIVLNAVT--------LDTLTKAVEFLEDHGYMV 162 (204)
T ss_dssp --CHHHHHHHHHHHCCTTCEEEEEECB--------HHHHHHHHHHHHHTTCEE
T ss_pred --CHHHHHHHHHHhcCCCeEEEEEecc--------cccHHHHHHHHHHCCCce
Confidence 7789999999999999999997554 234567888899999943
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=120.77 Aligned_cols=144 Identities=16% Similarity=0.125 Sum_probs=97.0
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 90 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~ 90 (444)
+..|..+.....+.+.+.+.. .++++ .+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+.
T Consensus 36 ~~~f~~~~~~~~~~~~~~l~~---~~~~~---~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~ 108 (205)
T 3grz_A 36 GLAFGTGNHQTTQLAMLGIER---AMVKP---LTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENA-ALNGI 108 (205)
T ss_dssp C-----CCHHHHHHHHHHHHH---HCSSC---CEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTC
T ss_pred CcccCCCCCccHHHHHHHHHH---hccCC---CEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCC
Confidence 344555555555555555542 12233 38999999999999998874 5778888776655544333 22343
Q ss_pred -CcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh
Q 013393 91 -PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 169 (444)
Q Consensus 91 -~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~ 169 (444)
++.+...|.... .+++||+|+|+. .+++ ...+++++.++|||||++++++... .....+.+++++
T Consensus 109 ~~v~~~~~d~~~~--~~~~fD~i~~~~-~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~~~~ 174 (205)
T 3grz_A 109 YDIALQKTSLLAD--VDGKFDLIVANI-LAEI---LLDLIPQLDSHLNEDGQVIFSGIDY--------LQLPKIEQALAE 174 (205)
T ss_dssp CCCEEEESSTTTT--CCSCEEEEEEES-CHHH---HHHHGGGSGGGEEEEEEEEEEEEEG--------GGHHHHHHHHHH
T ss_pred CceEEEecccccc--CCCCceEEEECC-cHHH---HHHHHHHHHHhcCCCCEEEEEecCc--------ccHHHHHHHHHH
Confidence 378888887553 458999999987 3443 4789999999999999999965432 135578889999
Q ss_pred cCeEEEeee
Q 013393 170 MCWKIVSKK 178 (444)
Q Consensus 170 ~gf~~v~~~ 178 (444)
.||+.+...
T Consensus 175 ~Gf~~~~~~ 183 (205)
T 3grz_A 175 NSFQIDLKM 183 (205)
T ss_dssp TTEEEEEEE
T ss_pred cCCceEEee
Confidence 999887654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=120.32 Aligned_cols=122 Identities=11% Similarity=0.167 Sum_probs=88.8
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCC--CCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~ 118 (444)
.+|||||||+|.++..+++. .++|+|+++.++..+..+. .+.+ .++.+...|+..++ +++++||.|++...
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~-~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~- 117 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKV-KDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 117 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHH-HHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHH-HHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC-
Confidence 48999999999999998863 5788888776665554333 3334 46888888887766 77889999998653
Q ss_pred cccccc--------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 119 IDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 119 l~~~~d--------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.+|... ...++.++.++|||||.|++.+.. ......+.+.+++.||+....
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~--------~~~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--------RGLFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--------HHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC--------HHHHHHHHHHHHHCCCccccc
Confidence 344221 357999999999999999997543 123456667777788876554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-13 Score=121.27 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=78.7
Q ss_pred CeEEEECCCcchHH-HHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFG-AYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a-~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||+|||+|.++ ..+++. .++++|+++.++..+... +...+.++.+...|...+++++++||+|+|+. +++|.
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~ 102 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENF-SRENNFKLNISKGDIRKLPFKDESMSFVYSYG-TIFHM 102 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHH-HHHHTCCCCEEECCTTSCCSCTTCEEEEEECS-CGGGS
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEECchhhCCCCCCceeEEEEcC-hHHhC
Confidence 38999999999874 444443 578888877666554432 33345678888999999998889999999987 46776
Q ss_pred --ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 123 --QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 123 --~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++...+++++.++|||||+++++.+.
T Consensus 103 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 103 RKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 67789999999999999999997643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-13 Score=135.01 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=80.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc--
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW-- 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~-- 121 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+.. .+...+.++.+...|....+.++++||+|+|+. .+|+
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~-n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~np-p~~~~~ 312 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK-GLEANALKAQALHSDVDEALTEEARFDIIVTNP-PFHVGG 312 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTTSCTTCCEEEEEECC-CCCTTC
T ss_pred CEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEcchhhccccCCCeEEEEECC-chhhcc
Confidence 48999999999999999885 56777777665544443 233346678899999888877678999999987 4665
Q ss_pred ---cccHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 122 ---LQRDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 122 ---~~d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
..+...++.++.++|||||+++++.....
T Consensus 313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l 344 (381)
T 3dmg_A 313 AVILDVAQAFVNVAAARLRPGGVFFLVSNPFL 344 (381)
T ss_dssp SSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred cccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence 45567899999999999999999876654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-12 Score=113.62 Aligned_cols=134 Identities=15% Similarity=0.165 Sum_probs=90.5
Q ss_pred cCCeeec-CCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHH
Q 013393 4 NGEKINF-PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHEN 80 (444)
Q Consensus 4 ~g~~~~f-pg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a 80 (444)
.|..+.| ++.+.......+...+.+.+.+.. . ...+|||+|||+|.++..+++. .++++|+++..+..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~---~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a 90 (194)
T 1dus_A 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVV-----D---KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLA 90 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC-----C---TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHH
T ss_pred CCCceEEEeCCCcCCccccchHHHHHHHHccc-----C---CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence 3445555 333333333233445556666643 1 2348999999999999999874 577887777665544
Q ss_pred HHHHHHHcCC-C--cEEEEecCccCCCCCCCccEEEeccccccc-cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 81 QIQFALERGI-P--STLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 81 ~i~~a~e~~~-~--~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~-~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..... ..+. + +.+...|... +.++++||+|+++. .+++ ..+...+++++.++|+|||++++..+.
T Consensus 91 ~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 91 KENIK-LNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP-PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp HHHHH-HTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC-CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred HHHHH-HcCCCccceEEEECchhc-ccccCCceEEEECC-CcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 43332 2233 3 7888888766 34467899999987 4555 356679999999999999999998765
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=117.75 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=94.3
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 79 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~ 79 (444)
+.|..+..|+. .+....+...+.+.+.+.... . ....+|||+|||+|.++..+++. .|+++|+++.++..
T Consensus 10 ~~g~~l~~~~~--~~rp~~~~~~~~l~~~l~~~~-~----~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~ 82 (189)
T 3p9n_A 10 AGGRRIAVPPR--GTRPTTDRVRESLFNIVTARR-D----LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAV 82 (189)
T ss_dssp TTTCEEECCSC--CC---CHHHHHHHHHHHHHHS-C----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHH
T ss_pred cCCcEecCCCC--CCccCcHHHHHHHHHHHHhcc-C----CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence 35667777772 344444555555555554210 0 12348999999999999977764 48889888877665
Q ss_pred HHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEecccccccc-ccHHHHHHHHHh--hcCCCeEEEEEcCC
Q 013393 80 NQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWL-QRDGILLLELDR--LLRPGGYFVYSSPE 148 (444)
Q Consensus 80 a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~l~~~-~d~~~~L~ei~r--vLkPGG~lvis~p~ 148 (444)
++.+.......++.+...|...++ +++++||+|+++.. .++. ++...++.++.+ +|+|||++++..+.
T Consensus 83 a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p-~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 83 IARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP-YNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC-TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred HHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC-CCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 554433332246888888877653 44689999999873 5543 677899999999 99999999997654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-13 Score=125.91 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc----CCCcE
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GIPST 93 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~----~~~~~ 93 (444)
...+.+.+.+.+. .++ .+|||||||+|.++..+++. .++++|+++ .+++.|+++ +.++.
T Consensus 46 ~~~~~~~l~~~~~------~~~---~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~v~ 111 (236)
T 1zx0_A 46 ETPYMHALAAAAS------SKG---GRVLEVGFGMAIAASKVQEAPIDEHWIIECND-----GVFQRLRDWAPRQTHKVI 111 (236)
T ss_dssp GHHHHHHHHHHHT------TTC---EEEEEECCTTSHHHHHHHTSCEEEEEEEECCH-----HHHHHHHHHGGGCSSEEE
T ss_pred HHHHHHHHHhhcC------CCC---CeEEEEeccCCHHHHHHHhcCCCeEEEEcCCH-----HHHHHHHHHHHhcCCCeE
Confidence 3455555555442 122 38999999999999999874 456665555 444555443 45678
Q ss_pred EEEecCccC--CCCCCCccEEEe-cccc-cc--ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 94 LGVLGTKRL--PYPSRSFELAHC-SRCR-ID--WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 94 ~~~~d~~~l--p~~~~sFDlI~~-~~~~-l~--~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+...|...+ ++++++||+|+| .... .+ +..+...+++++.|+|||||+|++..
T Consensus 112 ~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 112 PLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 888888887 888899999999 4421 11 12334578999999999999999854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=118.69 Aligned_cols=96 Identities=21% Similarity=0.363 Sum_probs=76.2
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+|||+|||+|.++..+++. .++++|+++.. ++.++++. .++.+...|...+++++++||+|+++.+ ++
T Consensus 45 ~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~-----~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~-~~ 118 (215)
T 2pxx_A 45 RILVLGCGNSALSYELFLGGFPNVTSVDYSSVV-----VAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGT-LD 118 (215)
T ss_dssp CEEEETCTTCSHHHHHHHTTCCCEEEEESCHHH-----HHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESH-HH
T ss_pred eEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHH-----HHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcc-hh
Confidence 7999999999999999875 56777666544 44444442 4678889998888888899999999774 43
Q ss_pred cc---------------ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WL---------------QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~---------------~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+. .+...+++++.++|||||++++.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 32 35578999999999999999998765
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=119.23 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=74.9
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCC-CCCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP-YPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp-~~~~sFDlI~~~~~~ 118 (444)
+|||+|||+|.++..+++. .++++|+++.++..+.... ...+ .++.+...|...++ +.+++||+|+++...
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL-TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY 103 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHH-HHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESB
T ss_pred EEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCc
Confidence 8999999999999988774 6788887776665544332 3333 36788888887775 566899999987643
Q ss_pred ccc--------cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDW--------LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~--------~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+.. ..+...+++++.++|||||++++....
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 104 LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 221 123457999999999999999997644
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-13 Score=131.48 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=86.0
Q ss_pred CeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHH----------------HcCC--------------Cc
Q 013393 46 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFAL----------------ERGI--------------PS 92 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~----------------e~~~--------------~~ 92 (444)
.+|||||||+|.++..++. ..|+|+|+++.++..+...... ..+. ..
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 152 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVK 152 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEE
T ss_pred CeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhc
Confidence 4899999999996554443 3577887776655443321100 0110 13
Q ss_pred EEEEecCcc-CCC-----CCCCccEEEeccccccc----cccHHHHHHHHHhhcCCCeEEEEEcCC---CCCCChh----
Q 013393 93 TLGVLGTKR-LPY-----PSRSFELAHCSRCRIDW----LQRDGILLLELDRLLRPGGYFVYSSPE---AYAHDPE---- 155 (444)
Q Consensus 93 ~~~~~d~~~-lp~-----~~~sFDlI~~~~~~l~~----~~d~~~~L~ei~rvLkPGG~lvis~p~---~~~~~~~---- 155 (444)
.+..+|+.. +|+ ++++||+|+|+. ++++ .++...+|+++.++|||||+|+++... .+.....
T Consensus 153 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~ 231 (289)
T 2g72_A 153 RVLPIDVHQPQPLGAGSPAPLPADALVSAF-CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 231 (289)
T ss_dssp EEECCCTTSSSTTCSSCSSCSSEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred eEEecccCCCCCccccccCCCCCCEEEehh-hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeee
Confidence 455667766 654 356799999998 4777 567889999999999999999986411 1100000
Q ss_pred hHHHHHHHHHHHHhcCeEEEeeec
Q 013393 156 NRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 156 ~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
....-.++.+++++.||+++....
T Consensus 232 ~~~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 232 VPVSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCeEEEeeE
Confidence 001234788899999998876643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-12 Score=119.33 Aligned_cols=101 Identities=19% Similarity=0.325 Sum_probs=78.4
Q ss_pred CeEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc--
Q 013393 46 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-- 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~-- 122 (444)
.+|||+|||+|.++..+++. .++++|+++.++..+..+ +...+.++.+...|...++++ ++||+|+|....++|.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~ 112 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEK-AMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQT 112 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHH-HHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCS
T ss_pred CeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHh-hhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCC
Confidence 48999999999999999875 577777776655444432 223356788889998888876 7899999975346766
Q ss_pred -ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 123 -QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 123 -~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.+...+++++.++|||||++++..+.
T Consensus 113 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 113 EADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 45568999999999999999997654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-11 Score=112.61 Aligned_cols=118 Identities=13% Similarity=-0.008 Sum_probs=86.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+..+ ++..+. ++.+...|.........+||+|++... +
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~-~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~-~-- 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKN-IDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG-G-- 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC-C--
T ss_pred CEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc-c--
Confidence 38999999999999999875 577887777655444432 333343 578888887773223357999998763 2
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+.. +++++.++|||||+++++... .....++.+.+++.|+++....
T Consensus 133 --~~~-~l~~~~~~LkpgG~lv~~~~~--------~~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 133 --SQA-LYDRLWEWLAPGTRIVANAVT--------LESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp --CHH-HHHHHHHHSCTTCEEEEEECS--------HHHHHHHHHHHHHHCSEEEEEE
T ss_pred --cHH-HHHHHHHhcCCCcEEEEEecC--------cccHHHHHHHHHhCCCcEEEEE
Confidence 455 999999999999999997654 2345677788888888776553
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-13 Score=125.17 Aligned_cols=114 Identities=20% Similarity=0.304 Sum_probs=87.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecC-ccCCCC-CCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYP-SRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~-~~lp~~-~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .|+++| +++.+++.++++..++.+...|. ..+|++ +++||+|+|+
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD-----~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAARWAAYD-----FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSSEEEEEE-----SCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CeEEEeCCCCCHHHHHHHHcCCEEEEEE-----CCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 48999999999999999885 455554 45566677777777889999998 678888 8999999986
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeecc
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~~ 180 (444)
.+...+++++.++|||||+++...... ....+.+.+++.||+.......
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYVGPRL---------NVPEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEEESSS---------CCTHHHHHHHHTTCEEEEEEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeCCcC---------CHHHHHHHHHHCCCeEEEEEee
Confidence 355678999999999999999321111 1235778889999988766543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-13 Score=125.48 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=89.2
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc--CCC----------------------------
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIP---------------------------- 91 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~--~~~---------------------------- 91 (444)
..+|||+|||+|.++..+++. .|+++|+++.++ +.++++ ..+
T Consensus 57 ~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNL-----WELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp EEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHH-----HHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHH-----HHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 348999999999999888764 456666665544 444332 111
Q ss_pred ----c-EEEEecCccCC-CCC---CCccEEEecccccc----ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh---
Q 013393 92 ----S-TLGVLGTKRLP-YPS---RSFELAHCSRCRID----WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE--- 155 (444)
Q Consensus 92 ----~-~~~~~d~~~lp-~~~---~sFDlI~~~~~~l~----~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~--- 155 (444)
+ .+...|....+ +++ ++||+|+|+.+ ++ +.++...+++++.++|||||+|+++..........
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 210 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC-LDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ 210 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhh-hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence 5 77888877654 355 89999999984 66 45577899999999999999999976331100000
Q ss_pred --h--HHHHHHHHHHHHhcCeEEEeeec
Q 013393 156 --N--RRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 156 --~--~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
. .-.-..+.+++++.||+++....
T Consensus 211 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 211 KFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp EEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 0 00123788899999999887654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=119.59 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=89.3
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCC---CCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~---~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..++. ..|+++|+++.++..+.... ...+. ++.+...|+..++++ +++||+|+|..
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~- 149 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLS-EALQLENTTFCHDRAETFGQRKDVRESYDIVTARA- 149 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC-
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCEEEEeccHHHhcccccccCCccEEEEec-
Confidence 4899999999999988884 35788888876665554333 33343 688888888877754 57899999865
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..+...+++++.++|||||++++...... ......+.+.++..||+.....
T Consensus 150 ----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~------~~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 150 ----VARLSVLSELCLPLVKKNGLFVALKAASA------EEELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp ----CSCHHHHHHHHGGGEEEEEEEEEEECC-C------HHHHHHHHHHHHHTTEEEEEEE
T ss_pred ----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc------hHHHHHHHHHHHHcCCeEeEEE
Confidence 26778999999999999999998643211 1234567778889999876543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-11 Score=108.31 Aligned_cols=138 Identities=11% Similarity=0.047 Sum_probs=98.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEec
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLG 98 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d 98 (444)
....+.+.+.+.. .+ ..+|||+|||+|.++..+++. .++++|+++..+..+..+. ...+ .++.+...|
T Consensus 21 ~~~~~~~~~~~~~-----~~---~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~d 91 (183)
T 2yxd_A 21 EEIRAVSIGKLNL-----NK---DDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNL-AKFNIKNCQIIKGR 91 (183)
T ss_dssp HHHHHHHHHHHCC-----CT---TCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHH-HHTTCCSEEEEESC
T ss_pred HHHHHHHHHHcCC-----CC---CCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HHcCCCcEEEEECC
Confidence 4455555556543 22 238999999999999999873 5778887776655444332 2233 367888888
Q ss_pred CccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 99 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 99 ~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
... ++++++||+|+|+.+ .+...+++++.++ |||.+++..+.. ....++.+.+++.||++....
T Consensus 92 ~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 92 AED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIVL--------ENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp HHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESCH--------HHHHHHHHHHHHTTCEEEEEE
T ss_pred ccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEeccc--------ccHHHHHHHHHHcCCeEEEEE
Confidence 766 666678999999874 5678899999999 999999986542 335678888999999877665
Q ss_pred cceeEe
Q 013393 179 DQTVIW 184 (444)
Q Consensus 179 ~~~~~w 184 (444)
.....+
T Consensus 156 ~~~~~~ 161 (183)
T 2yxd_A 156 VFISYA 161 (183)
T ss_dssp EEEEEE
T ss_pred eeeehh
Confidence 444443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-12 Score=119.16 Aligned_cols=101 Identities=20% Similarity=0.325 Sum_probs=78.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~- 122 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+..+ +...+.++.+...|...++++ ++||+|+|..+.+++.
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~ 120 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFD 120 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSC
T ss_pred CEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcCC
Confidence 48999999999999999875 577777777665444432 233456788999998888875 6899999875445543
Q ss_pred -ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 123 -QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 123 -~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++...+++++.++|||||.+++..+.
T Consensus 121 ~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 121 EEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 35568999999999999999987654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=125.93 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=86.5
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCC--CCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp--~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..++++ .|+++|+++..+..++.+.. ..+. ++.+...|...++ +++++||+|+|+...
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~-~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy 129 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVA-YNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY 129 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHH-HTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred CEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence 48999999999999999875 56777776655544443332 2333 4788888887765 557899999997421
Q ss_pred ccc----c---------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 119 IDW----L---------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~----~---------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
... . .+...++.++.++|||||++++..+.. ...++...+++.+|......
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE---------RLLDIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp -----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT---------THHHHHHHHHHTTEEEEEEE
T ss_pred CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH---------HHHHHHHHHHHCCCceEEEE
Confidence 111 0 234579999999999999999965431 24467778888899876543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=118.36 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=81.1
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC----CCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l----p~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++ ..|+|+|+++.++.. +++.++++ .++.+...|.... +++ ++||+|+|+.
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~-~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK-LLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH-HHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECC-
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEec-
Confidence 3899999999999998876 358888888765532 33455544 4667777776552 444 7899999873
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCC---CCCChhhHHHH-HHHHHHHHhcCeEEEeeec
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPENRRIW-NAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~---~~~~~~~~~~~-~~l~~l~~~~gf~~v~~~~ 179 (444)
.+ ..+...+++++.++|||||+|+++.+.. ....+ ...+ .++.. +++. |+++....
T Consensus 135 -~~-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~-l~~~-f~~~~~~~ 194 (210)
T 1nt2_A 135 -AQ-KNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEP--EEVFKSVLKE-MEGD-FKIVKHGS 194 (210)
T ss_dssp -CS-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCH--HHHHHHHHHH-HHTT-SEEEEEEE
T ss_pred -cC-hhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCH--HHHHHHHHHH-HHhh-cEEeeeec
Confidence 22 2334456999999999999999974221 11111 1222 22233 5666 88776643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=117.96 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=92.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cC-CCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RG-IPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++.... +.|++ .+ .++.+...|...+|+++++ |.|+...
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~-~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~ 106 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS-AKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLM 106 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH-HHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEES
T ss_pred CEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEc
Confidence 38999999999999999874 6899999988775433 22222 23 3688999999999988776 7777432
Q ss_pred --ccc--cccccHHHHHHHHHhhcCCCeEEEEEcCCC--CCCCh-------hhHH-HHHHHHHHHHhcCeEEEeeec
Q 013393 117 --CRI--DWLQRDGILLLELDRLLRPGGYFVYSSPEA--YAHDP-------ENRR-IWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 117 --~~l--~~~~d~~~~L~ei~rvLkPGG~lvis~p~~--~~~~~-------~~~~-~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+.. ++.++...+++++.++|||||.++++.... ....+ .... .-..+..++++.||++.....
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 107 PWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRY 183 (218)
T ss_dssp CCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeeec
Confidence 112 255667899999999999999999964221 10000 0111 223488899999998876643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=109.42 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=79.2
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecC-ccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGT-KRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~-~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..+ +.+.+. ++ +...|. ..++..+++||+|+++..
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~- 103 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN-AINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGG- 103 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH-HHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC--
T ss_pred CeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-HHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCc-
Confidence 38999999999999999875 356666655444333321 222233 35 555664 334433378999999884
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
+++ ..+++++.++|||||++++..... .....+..++++.++++...
T Consensus 104 ~~~----~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 104 LTA----PGVFAAAWKRLPVGGRLVANAVTV--------ESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TTC----TTHHHHHHHTCCTTCEEEEEECSH--------HHHHHHHHHHHHHCCEEEEE
T ss_pred ccH----HHHHHHHHHhcCCCCEEEEEeecc--------ccHHHHHHHHHHcCCeeEEE
Confidence 554 679999999999999999976542 23456677788888766543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=116.20 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=89.0
Q ss_pred CeEEEECCC-cchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-CCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCG-tG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+||| +|.++..+++. .|+++|+++.++..+.. .+...+.++.+...|...+ ++++++||+|+|+.. .+
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp-~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR-NIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP-YY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC-CC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC-Cc
Confidence 489999999 99999988764 67888888766655543 3334455888888886433 456789999999853 22
Q ss_pred ccc-------------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 121 WLQ-------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~-------------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
+.. ....+++++.++|||||++++..+.. ......+.+++++.||++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-------EKLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-------HhHHHHHHHHHHHcCCceEEE
Confidence 211 13689999999999999999975542 133567888899999976554
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=121.91 Aligned_cols=98 Identities=15% Similarity=0.240 Sum_probs=77.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+.. .+...+.++.+...|...+++ +++||+|+|+. +++|..
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~-~~~~~~ 198 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNE-TKEKENLNISTALYDINAANI-QENYDFIVSTV-VFMFLN 198 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCEEEEECCGGGCCC-CSCEEEEEECS-SGGGSC
T ss_pred CcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHcCCceEEEEeccccccc-cCCccEEEEcc-chhhCC
Confidence 38999999999999999886 56777777766544443 233345588999999888877 68999999998 577764
Q ss_pred --cHHHHHHHHHhhcCCCeEEEEEc
Q 013393 124 --RDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 124 --d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+...+++++.++|||||++++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 199 RERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34599999999999999988754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=125.83 Aligned_cols=102 Identities=19% Similarity=0.343 Sum_probs=78.5
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHH-------cCCCcEEEEecCccCC----CC--CCCc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE-------RGIPSTLGVLGTKRLP----YP--SRSF 109 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e-------~~~~~~~~~~d~~~lp----~~--~~sF 109 (444)
.+|||+|||+|.++..+++. .++++|+++.++..+..+.... ...++.+.+.|...++ ++ +++|
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~f 115 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCF 115 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCE
T ss_pred CEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCE
Confidence 48999999999999988864 5788888776665554433322 1235788889988775 53 4589
Q ss_pred cEEEecccccccc----ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 110 ELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 110 DlI~~~~~~l~~~----~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
|+|+|+. ++||. ++...++.++.++|||||+++++.+.
T Consensus 116 D~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 116 DICSCQF-VCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp EEEEEET-CGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEEEEec-chhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 9999998 58886 34468999999999999999998765
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=119.43 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=90.4
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
..+|||||||+|.++..++++ .++++|+ +..+..+.... .+.+ .++.+...|.. .++|. +||+|+|+.+
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v- 244 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRF-LDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV- 244 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC-
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhh-hhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh-
Confidence 458999999999999999873 4667777 55444443222 2223 46888888876 45655 8999999994
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCChh---hH----------HHHHHHHHHHHhcCeEEEeee
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPE---NR----------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~~~---~~----------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+|+.++. ..+++++.++|||||++++.++......+. +. ....++.++++++||+.+...
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 319 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH 319 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 6665665 689999999999999999976543211110 00 112478899999999887654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-11 Score=120.98 Aligned_cols=130 Identities=12% Similarity=0.054 Sum_probs=91.0
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..+|||||||+|.++..++++ .++++|+ +..+..+........ ..++.+...|+. .++|. +||+|+|+.+ +
T Consensus 203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v-l 278 (369)
T 3gwz_A 203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV-L 278 (369)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC-G
T ss_pred CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh-h
Confidence 358999999999999999874 4677777 554444433222211 246888888876 56665 8999999995 6
Q ss_pred cccccHH--HHHHHHHhhcCCCeEEEEEcCCCCCC-Chh--h--H----------HHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH-DPE--N--R----------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d~~--~~L~ei~rvLkPGG~lvis~p~~~~~-~~~--~--~----------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+.++.. ++|+++.++|||||++++.++..... .+. . . ....++.++++++||+.+...
T Consensus 279 h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 354 (369)
T 3gwz_A 279 HDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSL 354 (369)
T ss_dssp GGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEE
Confidence 6656665 79999999999999999976432211 111 0 0 112478889999999887664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.4e-12 Score=117.11 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=86.1
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc---CCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---lp~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++. .|+++|+++.++.. +++.|+.+ .++.+...|... +++++++||+|+|...
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~-~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD-LINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHH-HHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHH-HHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence 38999999999999988763 57888888765433 33555554 678888888766 4555789999998653
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~-~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.......++.++.++|||||+++++..... .........+..-.+++++.||+++..
T Consensus 157 ---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 157 ---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQ 214 (233)
T ss_dssp ---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEE
T ss_pred ---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 222334568899999999999999654310 000111112222257788999988764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=125.13 Aligned_cols=131 Identities=9% Similarity=0.101 Sum_probs=89.9
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccC--CCCCCCccEEEec
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL--PYPSRSFELAHCS 115 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~l--p~~~~sFDlI~~~ 115 (444)
..++|||||||+|.++..++++ .++++|+ +..+..+.. .+.+.+ .++.+...|+... |+| ++||+|+++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRK-QTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHH-HHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHH-HHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 3458999999999999999873 4677776 544333321 222223 3578888887765 566 789999999
Q ss_pred cccccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCChhh---------------------HHHHHHHHHHHHhcCe
Q 013393 116 RCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------------------RRIWNAMYDLLKSMCW 172 (444)
Q Consensus 116 ~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~---------------------~~~~~~l~~l~~~~gf 172 (444)
.+ +|+.++. ..+|+++.++|||||++++.++......... .....++.++++++||
T Consensus 256 ~v-lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 256 QF-LDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL 334 (363)
T ss_dssp SC-STTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred ch-hhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence 84 6654544 4789999999999999999765432211111 0023477888999999
Q ss_pred EEEeee
Q 013393 173 KIVSKK 178 (444)
Q Consensus 173 ~~v~~~ 178 (444)
+.+...
T Consensus 335 ~~v~~~ 340 (363)
T 3dp7_A 335 EVEEIQ 340 (363)
T ss_dssp EESCCC
T ss_pred eEEEEE
Confidence 887654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=111.36 Aligned_cols=113 Identities=12% Similarity=-0.011 Sum_probs=84.3
Q ss_pred eEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR- 124 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d- 124 (444)
+|||+|||+|.++..+++. .++|+|+++ .+++. ..++.+...|... ++++++||+|+|+.. +++..+
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~~v~gvD~s~-----~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~-~~~~~~~ 94 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRNTVVSTDLNI-----RALES----HRGGNLVRADLLC-SINQESVDVVVFNPP-YVPDTDD 94 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTSEEEEEESCH-----HHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCC-CBTTCCC
T ss_pred eEEEeccCccHHHHHHHhcCcEEEEECCH-----HHHhc----ccCCeEEECChhh-hcccCCCCEEEECCC-CccCCcc
Confidence 8999999999999999886 455565554 44443 4567888888766 666689999999874 544333
Q ss_pred --------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 125 --------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 125 --------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
...++.++.+.| |||++++..+.. ....++.+++++.||+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------NRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------CCHHHHHHHHHHCCCcEEEEEe
Confidence 357899999999 999999976432 2345788889999998765543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=119.42 Aligned_cols=115 Identities=9% Similarity=0.114 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHH-Hhh---CCceEEEcCcccchHHHHHHHHHcCCCcEEEEec
Q 013393 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAY-LLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 98 (444)
Q Consensus 23 ~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~-La~---~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d 98 (444)
.|...+...+.+ ..++++. +|||||||+|.++.. +++ ..|+|+|+++.++..++...++..-.++.+..+|
T Consensus 106 ~~~~l~~~E~~l--a~l~~g~---rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gD 180 (298)
T 3fpf_A 106 RYLELLKNEAAL--GRFRRGE---RAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180 (298)
T ss_dssp HHHHHHHHHHHH--TTCCTTC---EEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESC
T ss_pred cHHHHHHHHHHH--cCCCCcC---EEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 354444433321 2455555 999999999976644 343 3678888877766555543333222467888888
Q ss_pred CccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 99 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 99 ~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...+| +++||+|++... .++..++++++.|+|||||++++....
T Consensus 181 a~~l~--d~~FDvV~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 181 ETVID--GLEFDVLMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp GGGGG--GCCCSEEEECTT----CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred hhhCC--CCCcCEEEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 88775 689999998652 478889999999999999999997543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.2e-12 Score=119.22 Aligned_cols=133 Identities=11% Similarity=0.130 Sum_probs=90.3
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc---cCCCCCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RLPYPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~---~lp~~~~sF 109 (444)
.++||. +|||+|||+|.++.++++. .|+++|+++.++..+. +.+.+ ..++.....|.. ..++..+++
T Consensus 74 ~ikpG~---~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~-~~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 74 PVKEGD---RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRD-RRNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp CCCTTC---EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTT-CTTEEEEESCTTCGGGGTTTCCCE
T ss_pred CCCCCC---EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHh-hcCeeEEEEeccCccccccccceE
Confidence 566776 9999999999999999872 5889988887664443 22222 235666666643 345667899
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-ChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-DPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+|++. +++..+...++.++.++|||||+++++....... .......+.+..+.+++.||+.++..
T Consensus 149 DvVf~d---~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 149 DGLYAD---VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp EEEEEC---CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEe---ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEE
Confidence 999875 3444677789999999999999999864221000 00001234455667788999887654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-12 Score=119.27 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccC-C--CCCCCccEEEecc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL-P--YPSRSFELAHCSR 116 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~l-p--~~~~sFDlI~~~~ 116 (444)
..+|||||||+|.++..+++. .|+|+|+++.++..+..+ +.+.+ .++.+...|+..+ + +++++||.|++..
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~-~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLAS-AHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHH-HHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 348999999999999999863 488998888777655543 33334 4688888887663 3 6789999999876
Q ss_pred ccccccccH--------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh-cCeEEEe
Q 013393 117 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKIVS 176 (444)
Q Consensus 117 ~~l~~~~d~--------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~-~gf~~v~ 176 (444)
. .+|.... ..++.++.++|||||+|++++... .....+.+.+.. .+|+.+.
T Consensus 114 ~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~--------~~~~~~~~~~~~~~~~~~~~ 173 (218)
T 3dxy_A 114 P-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE--------PYAEHMLEVMSSIDGYKNLS 173 (218)
T ss_dssp C-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHHTSTTEEECC
T ss_pred C-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH--------HHHHHHHHHHHhCCCccccc
Confidence 3 4443222 259999999999999999976541 223344444443 4565543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-12 Score=120.76 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=81.1
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCccc-chHHH--HHHHHHcC-CCcEEEEecCccCCCC-CCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPND-VHENQ--IQFALERG-IPSTLGVLGTKRLPYP-SRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~d-is~a~--i~~a~e~~-~~~~~~~~d~~~lp~~-~~sFDlI~~~~ 116 (444)
.+|||||||+|.++..++++ .|+|+|+++.. +..+. .+.+.+.+ .++.+...|...+|.. ...+|.|+++.
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~~ 105 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILF 105 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEES
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEeC
Confidence 38999999999999999842 57888888433 32221 11112223 3578888888888632 13455555433
Q ss_pred cc----ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC---------hhhHHHH-H--HHHHHHHhcCeEEEeeecc
Q 013393 117 CR----IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------PENRRIW-N--AMYDLLKSMCWKIVSKKDQ 180 (444)
Q Consensus 117 ~~----l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~---------~~~~~~~-~--~l~~l~~~~gf~~v~~~~~ 180 (444)
.. .+...+...+|+++.|+|||||++++.......+. +.....| . ++..++++.||++......
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~~~ 185 (225)
T 3p2e_A 106 PWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKEL 185 (225)
T ss_dssp CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEEEEE
T ss_pred CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeeeec
Confidence 10 01112335789999999999999999321111000 0000111 1 4888999999998776543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8.2e-12 Score=112.17 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=86.5
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCC---CCCCccEEEe
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPY---PSRSFELAHC 114 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~---~~~sFDlI~~ 114 (444)
+++|. +|||||||. + ..|+++.+++.|+++. .++.+...|...+++ ++++||+|+|
T Consensus 10 ~~~g~---~vL~~~~g~-----------v------~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 69 (176)
T 2ld4_A 10 ISAGQ---FVAVVWDKS-----------S------PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILS 69 (176)
T ss_dssp CCTTS---EEEEEECTT-----------S------CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred CCCCC---EEEEecCCc-----------e------eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEE
Confidence 44444 899999996 1 1577888888888773 358888999888887 7899999999
Q ss_pred cccccccc-ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC-hhhHHHHHHHHHHHHhcCeEEE
Q 013393 115 SRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSPEAYAHD-PENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 115 ~~~~l~~~-~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~-~~~~~~~~~l~~l~~~~gf~~v 175 (444)
+. ++||. ++...++++++|+|||||+|++..+...... ........++.+++++.|| +.
T Consensus 70 ~~-~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 70 GL-VPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp CC-STTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred CC-hhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 88 58887 8899999999999999999999754321100 0001123578889999999 44
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=115.64 Aligned_cols=129 Identities=17% Similarity=0.103 Sum_probs=93.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..++++ .++++|+ +..+..+........ ..++.+...|... +++ ++||+|+++.+ +|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~v-l~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRI-IG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESC-GG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchh-cc
Confidence 58999999999999998863 5889999 877766654433222 3468888888766 565 67999999985 66
Q ss_pred ccccHH--HHHHHHHhhcCCCeEEEEEcCCCCCC-ChhhH---------------HHHHHHHHHHHhcCeEEEeee
Q 013393 121 WLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH-DPENR---------------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 121 ~~~d~~--~~L~ei~rvLkPGG~lvis~p~~~~~-~~~~~---------------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+.++.. .+++++.++|||||++++.+...... .+... ....++.+++++.||+.+...
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 320 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV 320 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence 545555 89999999999999999986442211 11100 013477889999999877653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=131.80 Aligned_cols=117 Identities=16% Similarity=0.277 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHH------cCC
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE------RGI 90 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e------~~~ 90 (444)
....+.+.+.+.. ....+|||||||+|.++..|++. .|+|+|+++.++..++.+.... ...
T Consensus 707 eqRle~LLelL~~--------~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~ 778 (950)
T 3htx_A 707 KQRVEYALKHIRE--------SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778 (950)
T ss_dssp HHHHHHHHHHHHH--------SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS
T ss_pred HHHHHHHHHHhcc--------cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC
Confidence 4445555555542 12348999999999999999875 3677777766655544332221 123
Q ss_pred CcEEEEecCccCCCCCCCccEEEeccccccccccHH--HHHHHHHhhcCCCeEEEEEcCC
Q 013393 91 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG--ILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~--~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++.+.+.|...+++++++||+|+|.. +++|+++.. .+++++.++|||| .+++++|+
T Consensus 779 nVefiqGDa~dLp~~d~sFDlVV~~e-VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 779 SATLYDGSILEFDSRLHDVDIGTCLE-VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEEEEESCTTSCCTTSCSCCEEEEES-CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred ceEEEECchHhCCcccCCeeEEEEeC-chhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 57889999999999889999999998 588877765 5999999999999 88888765
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=117.65 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=89.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. .|+++|+++..+..+..+ +...+..+.+...|.... +++++||+|+++. ..+
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n-~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~-~~~--- 195 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEAN-AKRNGVRPRFLEGSLEAA-LPFGPFDLLVANL-YAE--- 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHH-HHHTTCCCEEEESCHHHH-GGGCCEEEEEEEC-CHH---
T ss_pred CEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChhhc-CcCCCCCEEEECC-cHH---
Confidence 38999999999999988875 588999998877655543 334454577777775542 4467899999875 233
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
....++.++.++|||||+++++.... ...+.+.+.+++.||+++...
T Consensus 196 ~~~~~l~~~~~~LkpgG~lils~~~~--------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 LHAALAPRYREALVPGGRALLTGILK--------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEEG--------GGHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeecc--------CCHHHHHHHHHHCCCEEEEEe
Confidence 34689999999999999999975432 235678888999999887654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=115.18 Aligned_cols=119 Identities=9% Similarity=0.081 Sum_probs=89.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHH-cCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e-~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+....... ...++.+...|....++++++||+|++..
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~--- 174 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDL--- 174 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEES---
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECC---
Confidence 38999999999999888764 5788888776665554433332 22467888889888878888999999732
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++...++.++.++|||||++++..+.. ....++.+.+++.||..+...
T Consensus 175 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 175 ---MEPWKVLEKAALALKPDRFLVAYLPNI--------TQVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp ---SCGGGGHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHTTTTEEEEEEE
T ss_pred ---cCHHHHHHHHHHhCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceEEEE
Confidence 456689999999999999999987652 234566777788999866543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=117.51 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=102.6
Q ss_pred eeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHH
Q 013393 7 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 83 (444)
Q Consensus 7 ~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~ 83 (444)
.|.+.-..+.|..........+.+.+ +++ .+|||+|||+|.++..+++. .|+|+|+++.++..+..+
T Consensus 98 ~f~~d~~~~~f~~~~~~~~~~l~~~~-------~~~---~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n 167 (278)
T 2frn_A 98 KYKLDVAKIMFSPANVKERVRMAKVA-------KPD---ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVEN 167 (278)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHC-------CTT---CEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHH
T ss_pred EEEEEccceeEcCCcHHHHHHHHHhC-------CCC---CEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH
Confidence 33443333556666555555555543 223 38999999999999999873 388888888776555533
Q ss_pred HHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHH
Q 013393 84 FALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWN 161 (444)
Q Consensus 84 ~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~ 161 (444)
+..++. .+.+...|...++. +++||+|++... .+...++.++.++|||||++++.+....... ......
T Consensus 168 -~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~ 238 (278)
T 2frn_A 168 -IHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PREPFE 238 (278)
T ss_dssp -HHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTTTHH
T ss_pred -HHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc--cccHHH
Confidence 333343 36788888888776 678999998642 3346789999999999999999664421000 112356
Q ss_pred HHHHHHHhcCeEEEe
Q 013393 162 AMYDLLKSMCWKIVS 176 (444)
Q Consensus 162 ~l~~l~~~~gf~~v~ 176 (444)
.+.+.+++.||+...
T Consensus 239 ~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 239 TFKRITKEYGYDVEK 253 (278)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCeeEE
Confidence 778899999998765
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=107.17 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=83.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCC-CCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPS-RSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~-~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..+. ...+ .++.+...|... ++++ ++||+|++... ++
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~-~~ 111 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNL-QRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGS-GG 111 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHH-HHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCC-TT
T ss_pred CEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHH-HHcCCCcceEEEecCHHH-hcccCCCCCEEEECCc-hH
Confidence 38999999999999999875 5777777765554444322 2233 367777777655 2232 58999998863 33
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
+...++.++.++|+|||++++..+. ......+.+++++.||++.
T Consensus 112 ---~~~~~l~~~~~~l~~gG~l~~~~~~--------~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 112 ---ELQEILRIIKDKLKPGGRIIVTAIL--------LETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp ---CHHHHHHHHHHTEEEEEEEEEEECB--------HHHHHHHHHHHHHTTCCCE
T ss_pred ---HHHHHHHHHHHhcCCCcEEEEEecC--------cchHHHHHHHHHHCCCceE
Confidence 4578999999999999999997654 2345677888899998443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=114.23 Aligned_cols=124 Identities=10% Similarity=0.127 Sum_probs=83.5
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEE-EecCccCC---CCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP---YPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~-~~d~~~lp---~~~~sFDlI~~~~~ 117 (444)
.++|||+|||||.++..+++. .|+|+|+++.++..+. +....+... ..++..++ ++..+||+|+|..+
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~-----r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL-----RQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS 160 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH-----HTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCS
T ss_pred ccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcccceecccCceecchhhCCCCCCCEEEEEee
Confidence 348999999999999988874 5899999998886533 222222221 22333332 34456999998764
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC------------Chhh-HHHHHHHHHHHHhcCeEEEee
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DPEN-RRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~------------~~~~-~~~~~~l~~l~~~~gf~~v~~ 177 (444)
++ +...+|.++.|+|||||++++...+.+.. ++.. ...-.++.++++..||.+...
T Consensus 161 -f~---sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 161 -FI---SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp -SS---CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred -Hh---hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 44 34789999999999999999874332211 1111 123457888999999987654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-11 Score=114.55 Aligned_cols=122 Identities=15% Similarity=0.043 Sum_probs=88.6
Q ss_pred CCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCC---CCCccEEEecc
Q 013393 45 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCSR 116 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~---~~sFDlI~~~~ 116 (444)
..+|||||||+|..+..++. ..|+++|+++..+..+..+. ++.+. ++.+...|.+.++.. +++||+|+|..
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAI-EVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 34899999999999888875 36888888877665555333 33344 588888888877643 47899999865
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..+...++.++.++|||||++++...... ......+...++..||+.....
T Consensus 160 -----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~------~~e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 160 -----VAPLCVLSELLLPFLEVGGAAVAMKGPRV------EEELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp -----SCCHHHHHHHHGGGEEEEEEEEEEECSCC------HHHHTTHHHHHHHHTEEEEEEE
T ss_pred -----cCCHHHHHHHHHHHcCCCeEEEEEeCCCc------HHHHHHHHHHHHHcCCeEEEEE
Confidence 24668899999999999999987543211 1234456677888899876653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.6e-12 Score=119.70 Aligned_cols=97 Identities=12% Similarity=0.148 Sum_probs=75.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCC-----CCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPS-----RSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~-----~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..+++. .|+++|+++. +++.++++ ..++.+...|...++++. .+||+|+|+.
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFPRVIGLDVSKS-----ALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSSCEEEEESCHH-----HHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CeEEEEcCCCCHHHHHHHHhCCCEEEEECCHH-----HHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 37999999999999999874 5777766654 44555554 336788888887765331 3499999988
Q ss_pred ccccccc--cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 117 CRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 117 ~~l~~~~--d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++|+.+ +...+++++.++|||||++++.+..
T Consensus 133 -~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 133 -GFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp -SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred -hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 577777 6789999999999999998887654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-11 Score=119.84 Aligned_cols=129 Identities=21% Similarity=0.231 Sum_probs=87.3
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
..+|||||||+|.++..+++. .++++|+ +..+..+..+. ...+. ++.+...|... +++. .||+|+|+.+
T Consensus 183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v- 257 (374)
T 1qzz_A 183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRF-ADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV- 257 (374)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC-
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc-
Confidence 358999999999999998864 4667776 55544443322 22233 57888888754 4443 4999999984
Q ss_pred ccccccHH--HHHHHHHhhcCCCeEEEEEcC--CCCC-CChhhH---------------HHHHHHHHHHHhcCeEEEeee
Q 013393 119 IDWLQRDG--ILLLELDRLLRPGGYFVYSSP--EAYA-HDPENR---------------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~~~d~~--~~L~ei~rvLkPGG~lvis~p--~~~~-~~~~~~---------------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+|+.++.. .+++++.++|||||++++.++ .... ...... ..-.++.+++++.||+.+...
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 337 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 337 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 66656654 899999999999999999776 3111 111000 022467888999999877654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-12 Score=128.73 Aligned_cols=101 Identities=14% Similarity=0.216 Sum_probs=73.5
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC----CcEEEEecCccCCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~----~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+..+.. ..+. ++.+...|... ++++++||+|+|+..
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~-~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 301 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH-HcCCCcCceEEEEechhhc-cCCCCCeeEEEECCC
Confidence 48999999999999999874 58888888776655554333 3332 46677888665 566789999999873
Q ss_pred cccccc-----cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 118 RIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 118 ~l~~~~-----d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
+|+.. ....+++++.++|||||+++++.+..
T Consensus 302 -fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 302 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp -C-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred -cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 55321 12368999999999999999976554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=114.81 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=83.7
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH-----c-CCCcEEEEecCcc-CC--CCCCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----R-GIPSTLGVLGTKR-LP--YPSRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e-----~-~~~~~~~~~d~~~-lp--~~~~sFDlI 112 (444)
.+|||||||+|.++..|++. .++|+|+++.++..++.+.... . ..++.+...|+.. ++ +++++||.|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v 127 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKM 127 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEE
Confidence 47999999999999999874 5889988887776555333221 2 2468888899876 66 778999999
Q ss_pred Eecccccccccc--------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-eEEEe
Q 013393 113 HCSRCRIDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 176 (444)
Q Consensus 113 ~~~~~~l~~~~d--------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g-f~~v~ 176 (444)
++... -+|... ...+++++.++|||||.|++.+.. ......+.+.+.+.+ |+.+.
T Consensus 128 ~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~--------~~~~~~~~~~l~~~~~f~~~~ 191 (235)
T 3ckk_A 128 FFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV--------LELHDWMCTHFEEHPLFERVP 191 (235)
T ss_dssp EEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESC--------HHHHHHHHHHHHTSTTEEEEC
T ss_pred EEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCCccccC
Confidence 87652 333211 147999999999999999997543 122344555555554 65543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7e-11 Score=118.57 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=91.8
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..+|||||||+|.++..++++ .++++|+ +..+..+..+..... ..++.+...|....++++ +|+|+++.+ +
T Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~v~~~~v-l 266 (359)
T 1x19_A 191 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI-L 266 (359)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC--CSEEEEESC-G
T ss_pred CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC--CCEEEEech-h
Confidence 348999999999999999874 5789998 777665554433322 224888889988777764 399999984 6
Q ss_pred ccccc--HHHHHHHHHhhcCCCeEEEEEcCCCCCC-Chh-----------h-H------HHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAH-DPE-----------N-R------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d--~~~~L~ei~rvLkPGG~lvis~p~~~~~-~~~-----------~-~------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+.++ ...+++++.++|||||++++.+...... .+. . . ....++.++++++||+.+...
T Consensus 267 h~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~ 346 (359)
T 1x19_A 267 YSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMV 346 (359)
T ss_dssp GGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEE
Confidence 65565 5789999999999999998876321100 000 0 0 123467788889999877654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-11 Score=114.10 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=86.7
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC---CCCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp---~~~~sF 109 (444)
.++++. +|||+|||+|.++.++++. .|+++|+++.++.. .++.++++ .++.+...|+.... ...++|
T Consensus 73 ~l~~g~---~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~ 147 (232)
T 3id6_C 73 PIRKGT---KVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSYKSVVENV 147 (232)
T ss_dssp SCCTTC---EEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGTTTTCCCE
T ss_pred CCCCCC---EEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhhhccccce
Confidence 355555 8999999999999988762 68999998876533 33455554 57888888876532 124689
Q ss_pred cEEEeccccccccccHHH-HHHHHHhhcCCCeEEEEEcCCCC---CCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 110 ELAHCSRCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEAY---AHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~-~L~ei~rvLkPGG~lvis~p~~~---~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+|++... . ++... ++..+.++|||||+|+++..... ...+ .+.+......+++.||+++...
T Consensus 148 D~I~~d~a-~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~--~e~~~~~~~~L~~~gf~~~~~~ 214 (232)
T 3id6_C 148 DVLYVDIA-Q---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDP--KEIYKTEVEKLENSNFETIQII 214 (232)
T ss_dssp EEEEECCC-C---TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCS--SSSTTHHHHHHHHTTEEEEEEE
T ss_pred EEEEecCC-C---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCH--HHHHHHHHHHHHHCCCEEEEEe
Confidence 99998753 2 44444 45566669999999999753322 1111 1223455667778899887764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=118.45 Aligned_cols=117 Identities=9% Similarity=0.135 Sum_probs=85.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc-C-CCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-G-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~-~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..+. ... + .++.+...|... ++++++||+|++.
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~--- 186 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-SEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD--- 186 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH-HTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC---
T ss_pred CEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HhcCCCCcEEEEECchhc-cCcCCCccEEEEc---
Confidence 38999999999999988763 5777777665554443222 222 3 357888888766 6667889999973
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.++...+++++.++|||||+++++++.. .....+.+.+++.||..+...
T Consensus 187 ---~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 187 ---IPDPWNHVQKIASMMKPGSVATFYLPNF--------DQSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp ---CSCGGGSHHHHHHTEEEEEEEEEEESSH--------HHHHHHHHHSGGGTEEEEEEE
T ss_pred ---CcCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCeEEEEE
Confidence 3566789999999999999999987652 234567777888999876553
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-12 Score=119.25 Aligned_cols=125 Identities=11% Similarity=0.167 Sum_probs=75.8
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEE-ecCccC---CCCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGV-LGTKRL---PYPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~-~d~~~l---p~~~~sFDlI~~~~~ 117 (444)
.++|||||||+|.++..+++. .|+|+|+++.++..+. ++...+.... .+...+ .++...||.+.+..+
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v 112 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKI-----RSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVS 112 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHH-----HTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCS
T ss_pred CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHH-----HhCccccccccceEEEeCHhHcCcCCCCEEEEEEE
Confidence 348999999999999999874 5889999988876533 3222221110 111111 111112454444332
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC------------Chh-hHHHHHHHHHHHHhcCeEEEeee
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DPE-NRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~------------~~~-~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..+ ...++.++.|+|||||++++...+.+.. ++. ......++.+++++.||++....
T Consensus 113 ~~~----l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 113 FIS----LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp SSC----GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred hhh----HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 111 2679999999999999999864221111 111 11234578899999999877654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=120.21 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=76.0
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccc--c
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC--R 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~--~ 118 (444)
.+|||||||+|.++..++++ .|+|+|+++ ++..+. +.++..+ .++.+...|..++++++++||+|+|... .
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 143 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred CEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhh
Confidence 38999999999999999875 588999886 554443 3334444 4678889999999888889999998652 2
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+.+..+...++.++.++|||||.++.
T Consensus 144 l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 144 LLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp BTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 44446677899999999999999983
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=112.94 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=82.6
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc----CCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~----lp~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+.. .++. ..++.+...|... ++++ ++||+|++.
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~-~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~-- 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAE-RENIIPILGDANKPQEYANIV-EKVDVIYED-- 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTT-CTTEEEEECCTTCGGGGTTTS-CCEEEEEEC--
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHH-Hhhc-CCCeEEEECCCCCcccccccC-ccEEEEEEe--
Confidence 38999999999999988763 47788777655433332 2222 2567888888877 6766 789999832
Q ss_pred cccccccH---HHHHHHHHhhcCCCeEEEEEcCC-CCCCChhhHHHH-HHHHHHHHhcCeEEEeee
Q 013393 118 RIDWLQRD---GILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIW-NAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 ~l~~~~d~---~~~L~ei~rvLkPGG~lvis~p~-~~~~~~~~~~~~-~~l~~l~~~~gf~~v~~~ 178 (444)
.++. ..+++++.++|||||+++++... ............ .++. ++++.||+.+...
T Consensus 151 ----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 151 ----VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp ----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred ----cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence 2333 67899999999999999996211 011111111223 4566 8888999877654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=120.33 Aligned_cols=129 Identities=12% Similarity=0.158 Sum_probs=89.7
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..++++ .++++|++ ..+..+..... +.+. ++.+...|....+++++ ||+|+|+. ++
T Consensus 167 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~-~l 242 (335)
T 2r3s_A 167 LKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR-IQGVASRYHTIAGSAFEVDYGND-YDLVLLPN-FL 242 (335)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH-HHTCGGGEEEEESCTTTSCCCSC-EEEEEEES-CG
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH-hcCCCcceEEEecccccCCCCCC-CcEEEEcc-hh
Confidence 48999999999999998864 46777766 44444433222 2233 47888888877777654 99999988 46
Q ss_pred cccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCC--ChhhH----------------HHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH--DPENR----------------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~--~~~~~----------------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+.++. ..+++++.++|||||++++.++..... .+... ..-.++.+++++.||+.+...
T Consensus 243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 665433 689999999999999999976543211 11110 013477888999999877653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-12 Score=126.85 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=75.3
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW- 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~- 121 (444)
+|||+|||+|.++..+++. .++++|+++.++..+..+ ....+....+...|.... ++++||+|+|+.. +|+
T Consensus 199 ~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~-~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~-~~~g 274 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRAT-LAANGVEGEVFASNVFSE--VKGRFDMIISNPP-FHDG 274 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHH-HHHTTCCCEEEECSTTTT--CCSCEEEEEECCC-CCSS
T ss_pred eEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCEEEEcccccc--ccCCeeEEEECCC-cccC
Confidence 7999999999999998763 688888887666555433 333456667777776543 3678999999874 553
Q ss_pred ----cccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 122 ----LQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 122 ----~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
..+...+++++.++|||||.+++..+..
T Consensus 275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 2455789999999999999999987654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=105.48 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=72.3
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------CCCCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~~~sFDlI 112 (444)
.+|||+|||+|.++..+++ ..++++|+++ +... .++.+...|....+ +++++||+|
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i 92 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCceeEE
Confidence 3899999999999988865 3688999988 5421 45778888887766 677899999
Q ss_pred EeccccccccccH-----------HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~~d~-----------~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++. .+++..+. ..+++++.++|||||.++++.+.
T Consensus 93 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 93 MSDM-APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EECC-CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9976 35554444 68999999999999999997654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=121.51 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=77.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCC--cEEEEecCccCCCCCCCccEEEeccc--c
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC--R 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~~~sFDlI~~~~~--~ 118 (444)
++|||||||+|.++..++++ .|+|+|+++ ++..+. +.++..+.. +.+...|...+++++++||+|+|... .
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 38999999999999999885 689999984 554444 344444443 78999999999998899999998641 2
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+++..+...++.++.++|||||+++.
T Consensus 146 l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 146 LFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 34457788999999999999999984
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-11 Score=110.25 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=72.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..+.......++.+...|....+.++++||+|++.. .+++..
T Consensus 79 ~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~-~~~~~~ 157 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTA-APPEIP 157 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESS-BCSSCC
T ss_pred CEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEcc-chhhhh
Confidence 38999999999999999874 677888777655544433332222357888888877666678999999987 466655
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+ ++.++|||||+++++.+.
T Consensus 158 ~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 158 T------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp T------HHHHTEEEEEEEEEEECS
T ss_pred H------HHHHhcccCcEEEEEEcC
Confidence 4 689999999999998766
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=114.16 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=85.1
Q ss_pred CCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHH
Q 013393 5 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 81 (444)
Q Consensus 5 g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~ 81 (444)
|..+..|.+ ..+....+.+.+.+.+.+... .++ .+|||+|||+|.++..++.+ .|+++|+++.++..++
T Consensus 22 g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~----~~~---~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~ 93 (201)
T 2ift_A 22 GRKLPVLNS-EGLRPTGDRVKETLFNWLMPY----IHQ---SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLK 93 (201)
T ss_dssp TCEEECC----------CHHHHHHHHHHHHH----HTT---CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CcEecCCCC-CCcCcCHHHHHHHHHHHHHHh----cCC---CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHH
Confidence 445555553 233444455555555555321 122 38999999999999986653 4788877776665554
Q ss_pred HHHHHHcC---CCcEEEEecCccCC--CCCCC-ccEEEeccccccccccHHHHHHHH--HhhcCCCeEEEEEcCCC
Q 013393 82 IQFALERG---IPSTLGVLGTKRLP--YPSRS-FELAHCSRCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 82 i~~a~e~~---~~~~~~~~d~~~lp--~~~~s-FDlI~~~~~~l~~~~d~~~~L~ei--~rvLkPGG~lvis~p~~ 149 (444)
.+. ...+ .++.+...|...+. .++++ ||+|+++.. ++ ..+...++.++ .++|||||.++++....
T Consensus 94 ~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 94 KNL-QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp HHH-HHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred HHH-HHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 333 3334 36788888876643 23678 999999873 44 35667889998 77899999999976553
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-11 Score=117.83 Aligned_cols=130 Identities=10% Similarity=0.120 Sum_probs=91.3
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCC-CCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp-~~~~sFDlI~~~~~ 117 (444)
..+|||||||+|.++..++++ .++++|+ +..+..+.. ...+.+. ++.+...|....+ ++++.||+|+|+.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~- 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARK-TIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND- 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHH-HHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES-
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHH-HHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec-
Confidence 458999999999999999873 5778888 555544443 3333333 4788888877765 2346699999998
Q ss_pred cccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCC--Chhh----------------HHHHHHHHHHHHhcCeEEEee
Q 013393 118 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH--DPEN----------------RRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 ~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~--~~~~----------------~~~~~~l~~l~~~~gf~~v~~ 177 (444)
++|+.++. ..+++++.++|||||++++.++..... .+.. .....++.+++++.||+++..
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 257 CLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 46665655 689999999999999999976332111 0100 011246889999999998874
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=116.67 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=66.9
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC-----CCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-----PSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~-----~~~sFDlI~~~~~~ 118 (444)
.+|||||||+|.++..|+++ .|+++|+ ++.+++.|+++.... +...+...++. .+++||+|+|+.+
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~~V~gvD~-----S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~- 119 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGASVTVFDF-----SQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDRL- 119 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCEEEEEES-----CHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEESC-
T ss_pred CEEEEEeCcchHHHHHHHhcCCEEEEEEC-----CHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhhh-
Confidence 38999999999999999986 4555554 555666666653222 22233333332 2578999999984
Q ss_pred cccc--ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWL--QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++|. ++...+++++.++| |||.++++.+.
T Consensus 120 l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 120 INRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 5553 34567999999999 99999998654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-11 Score=120.30 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=84.9
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHH-HHH--HcCCCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQ-FAL--ERGIPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~-~a~--e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
..+|||||||+|.++..++++ .++++|++ +...+ .+. ....++.+...|+. .++| +||+|+++.
T Consensus 185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-----~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~- 255 (348)
T 3lst_A 185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-----EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR- 255 (348)
T ss_dssp SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-----HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES-
T ss_pred CceEEEECCccCHHHHHHHHHCCCCEEEEecCH-----HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh-
Confidence 348999999999999999873 34555552 22110 000 11235788888875 4455 899999998
Q ss_pred cccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCChh-h---------------HHHHHHHHHHHHhcCeEEEeee
Q 013393 118 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPE-N---------------RRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 ~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~~~-~---------------~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++|+.++. ..+|+++.++|||||++++.+......... . .....++.+++++.||+.+...
T Consensus 256 vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 334 (348)
T 3lst_A 256 ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVV 334 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 47766776 599999999999999999976432211110 0 0123478899999999887654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=117.94 Aligned_cols=91 Identities=26% Similarity=0.445 Sum_probs=74.7
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .++++ |+++.+++.|+++..++.+...|...+|+++++||+|+|+.. .
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~v-----D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~-- 158 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEITTFGL-----DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-P-- 158 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTSEEEEE-----ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-C--
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCeEEEE-----eCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-h--
Confidence 48999999999999999875 35555 455667777888777888999999889988899999998763 1
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.++.++.++|||||++++.++..
T Consensus 159 -----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 -----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred -----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 25899999999999999987664
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=115.12 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=89.3
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
..+|||||||+|.++..+++. .++++|+ +..+..+..+. ...+. ++.+...|..+ +++. .||+|+++.+
T Consensus 184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v- 258 (360)
T 1tw3_A 184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYL-KDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV- 258 (360)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC-
T ss_pred CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc-
Confidence 348999999999999998863 4566776 65554444332 23333 57888888654 4443 4999999984
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcCC-CC-CCChhhH---------------HHHHHHHHHHHhcCeEEEeeec
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSPE-AY-AHDPENR---------------RIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~-~~-~~~~~~~---------------~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
+|+.++. ..+++++.++|||||++++.++. .. ....... ..-.++.++++++||+++....
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 6665655 48999999999999999998765 21 1111100 0124778899999998876543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=108.24 Aligned_cols=135 Identities=14% Similarity=0.077 Sum_probs=92.1
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHH
Q 013393 4 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHEN 80 (444)
Q Consensus 4 ~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a 80 (444)
.|..|.+|.+ .......+...+.+.+.+.. +.+ ..+|||+|||+|.++..+++. .|+++|+++.++..+
T Consensus 12 ~~~~~~~~~~-~~~rp~~~~~~~~~~~~l~~----~~~---~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a 83 (187)
T 2fhp_A 12 GGRRLKALDG-DNTRPTTDKVKESIFNMIGP----YFD---GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVI 83 (187)
T ss_dssp TTCBCCCCCC-CSSCCCCHHHHHHHHHHHCS----CCS---SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred cCccccCCCC-CCcCcCHHHHHHHHHHHHHh----hcC---CCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence 3455666654 34555566777777777642 112 338999999999999988764 578888887666555
Q ss_pred HHHHHHHcCC--CcEEEEecCccC----CCCCCCccEEEeccccccccccHHHHHHHH--HhhcCCCeEEEEEcCCC
Q 013393 81 QIQFALERGI--PSTLGVLGTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 81 ~i~~a~e~~~--~~~~~~~d~~~l----p~~~~sFDlI~~~~~~l~~~~d~~~~L~ei--~rvLkPGG~lvis~p~~ 149 (444)
+.+.. ..+. ++.+...|.... ++++++||+|+++.. .+ ..+....+..+ .++|+|||++++..+..
T Consensus 84 ~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 84 KENIA-ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHH-HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHH-HhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 53332 3333 577888886552 223678999999863 33 35566777777 89999999999987654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=121.97 Aligned_cols=123 Identities=13% Similarity=0.050 Sum_probs=87.6
Q ss_pred cccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh---C-CceEEEcCcccchHHHHHH------H
Q 013393 16 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---H-DIIAMSLAPNDVHENQIQF------A 85 (444)
Q Consensus 16 ~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~---~-~V~gvdis~~dis~a~i~~------a 85 (444)
.|.......+..+.+.+.+ .++. +|||||||+|.++..++. . .++|+|+++.++..+..+. +
T Consensus 153 vYGEt~~~~i~~il~~l~l-----~~gd---~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~ 224 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKM-----TDDD---LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM 224 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCC-----CTTC---EEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHhcCC-----CCCC---EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555543 3344 899999999999988875 2 3899999886654443321 2
Q ss_pred HHcC---CCcEEEEecCccCCCCC--CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 86 LERG---IPSTLGVLGTKRLPYPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 86 ~e~~---~~~~~~~~d~~~lp~~~--~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+..+ .++.+..+|+..+|+++ ..||+|+++. .+ |.++....|.+++|+|||||+|+++.+.
T Consensus 225 ~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn-~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f 290 (438)
T 3uwp_A 225 KWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN-FA-FGPEVDHQLKERFANMKEGGRIVSSKPF 290 (438)
T ss_dssp HHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECC-TT-CCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred HHhCCCCCCeEEEECcccCCccccccCCccEEEEcc-cc-cCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence 2223 46889999998888753 4799999876 34 3478888999999999999999986543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.9e-11 Score=113.57 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCeEEEECCCc---chHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-----------CCC
Q 013393 45 IRNVLDVGCGV---ASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----------YPS 106 (444)
Q Consensus 45 ~~rVLDVGCGt---G~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-----------~~~ 106 (444)
.++|||||||+ |.++..+.+ ..|+++|+++.++..++... ....++.+...|+...+ ++.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~--~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALL--AKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHH--TTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhc--CCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 35899999999 988766543 46888888776654444322 11346788888875421 233
Q ss_pred CCccEEEecccccccccc--HHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 107 RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d--~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
.+||+|+++. ++||+++ ...+|+++.++|||||+|+++....
T Consensus 156 ~~~d~v~~~~-vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVG-MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETT-TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEec-hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 4899999888 6888776 7899999999999999999987543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.8e-11 Score=111.61 Aligned_cols=116 Identities=11% Similarity=0.178 Sum_probs=84.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-C-cEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-P-STLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~-~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+. + +.+...|.... +++++||+|++..
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~-- 170 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK-WAGFDDRVTIKLKDIYEG-IEEENVDHVILDL-- 170 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH-HHTCTTTEEEECSCGGGC-CCCCSEEEEEECS--
T ss_pred CEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH-HcCCCCceEEEECchhhc-cCCCCcCEEEECC--
Confidence 38999999999999988764 57788777665544443332 2243 3 78888887643 6778899999743
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC--eEEEee
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC--WKIVSK 177 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g--f~~v~~ 177 (444)
++...++.++.++|||||++++..+.. ....++.+.+++.| |..+..
T Consensus 171 ----~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 171 ----PQPERVVEHAAKALKPGGFFVAYTPCS--------NQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp ----SCGGGGHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHTGGGBSCCEE
T ss_pred ----CCHHHHHHHHHHHcCCCCEEEEEECCH--------HHHHHHHHHHHHcCCCccccEE
Confidence 456689999999999999999976552 23456777888888 865543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.6e-11 Score=108.26 Aligned_cols=114 Identities=13% Similarity=0.026 Sum_probs=81.1
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++ ..++++|+++..+..+.... ...+. ++.+...|...++ ++++||+|+|+.
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~---- 140 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQ-HELKLENIEPVQSRVEEFP-SEPPFDGVISRA---- 140 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHTTCSSEEEEECCTTTSC-CCSCEEEEECSC----
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEecchhhCC-ccCCcCEEEEec----
Confidence 3899999999999988875 36788888776655444332 23343 4788888887766 457899999764
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..+...++.++.++|+|||++++..... .-+++.++++ ||+.+..
T Consensus 141 -~~~~~~~l~~~~~~L~~gG~l~~~~~~~---------~~~~~~~~~~--g~~~~~~ 185 (207)
T 1jsx_A 141 -FASLNDMVSWCHHLPGEQGRFYALKGQM---------PEDEIALLPE--EYQVESV 185 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEESSC---------CHHHHHTSCT--TEEEEEE
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEeCCC---------chHHHHHHhc--CCceeee
Confidence 2567799999999999999999964331 1123444444 8877653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=111.32 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=83.5
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccc--
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR-- 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~-- 118 (444)
.+|||+|||+|.++..+++ ..++++|+++..+..+..+.. ..+. ++.+...|.... +++++||+|+|+...
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~-~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ-HLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYID 188 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH-HHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBC
T ss_pred CEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEEcchhhh-cccCCccEEEECCCCCC
Confidence 3899999999999999884 367888877766655543332 2343 578888876552 346789999997321
Q ss_pred ----------cccc------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 119 ----------IDWL------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 119 ----------l~~~------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
++|. .+...++.++.++|||||++++..+.. ...++.+++++.||+.+
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~Gf~~v 258 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ---------QGEAVRQAFILAGYHDV 258 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS---------CHHHHHHHHHHTTCTTC
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch---------HHHHHHHHHHHCCCcEE
Confidence 1121 234688999999999999999975431 13467788888899644
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=113.40 Aligned_cols=120 Identities=12% Similarity=0.001 Sum_probs=71.7
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCC-----CCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-----RSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~-----~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+.++.+...|... ++++ ++||+|+|+.
T Consensus 32 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~np 109 (215)
T 4dzr_A 32 TRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE-RFGAVVDWAAADGIE-WLIERAERGRPWHAIVSNP 109 (215)
T ss_dssp EEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-HHHHHHHTTCCBSEEEECC
T ss_pred CEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HhCCceEEEEcchHh-hhhhhhhccCcccEEEECC
Confidence 48999999999999999874 57888888776655443322 223356666667655 4444 8999999964
Q ss_pred cccccccc--------------------------HHHHHHHHHhhcCCCeE-EEEEcCCCCCCChhhHHHHHHHHHHHH-
Q 013393 117 CRIDWLQR--------------------------DGILLLELDRLLRPGGY-FVYSSPEAYAHDPENRRIWNAMYDLLK- 168 (444)
Q Consensus 117 ~~l~~~~d--------------------------~~~~L~ei~rvLkPGG~-lvis~p~~~~~~~~~~~~~~~l~~l~~- 168 (444)
. .+...+ ...+++++.++|||||+ +++..+. .....+.++++
T Consensus 110 p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~l~~ 179 (215)
T 4dzr_A 110 P-YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---------NQADEVARLFAP 179 (215)
T ss_dssp C-CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---------SCHHHHHHHTGG
T ss_pred C-CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---------ccHHHHHHHHHH
Confidence 2 111111 16788999999999999 5554432 12346677888
Q ss_pred -hcCeEEEee
Q 013393 169 -SMCWKIVSK 177 (444)
Q Consensus 169 -~~gf~~v~~ 177 (444)
+.||..+..
T Consensus 180 ~~~gf~~~~~ 189 (215)
T 4dzr_A 180 WRERGFRVRK 189 (215)
T ss_dssp GGGGTEECCE
T ss_pred hhcCCceEEE
Confidence 888866543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=114.93 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=86.7
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHH----HcCCCcEEEEecCccCCC--CCCCccEEEe
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKRLPY--PSRSFELAHC 114 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~----e~~~~~~~~~~d~~~lp~--~~~sFDlI~~ 114 (444)
+++|||||||+|.++..+++. .++++|+++..+..+...+.. ....++.+...|...++. ++++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~ 175 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence 358999999999999999874 467777776555444332211 013467888888766543 4688999998
Q ss_pred ccccccccccH----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 115 SRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 115 ~~~~l~~~~d~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
... .++.+.. ..+++++.++|||||++++.....+.. ......+.+.+++.||..+..
T Consensus 176 d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~~~~~l~~~GF~~v~~ 237 (304)
T 3bwc_A 176 DTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLD----LELIEKMSRFIRETGFASVQY 237 (304)
T ss_dssp ECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTC----HHHHHHHHHHHHHHTCSEEEE
T ss_pred CCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc----hHHHHHHHHHHHhCCCCcEEE
Confidence 653 3432222 589999999999999999987654321 234567778888889975543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-11 Score=109.91 Aligned_cols=134 Identities=12% Similarity=0.046 Sum_probs=86.7
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHH
Q 013393 4 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHEN 80 (444)
Q Consensus 4 ~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a 80 (444)
.|..+..|.+ ..+....+...+.+.+.+... + ++ .+|||+|||+|.++..++.+ .|+++|+++.++..+
T Consensus 22 ~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~---~-~~---~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a 93 (202)
T 2fpo_A 22 RGRKLPVPDS-PGLRPTTDRVRETLFNWLAPV---I-VD---AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQL 93 (202)
T ss_dssp TTCEEECCCC-------CHHHHHHHHHHHHHH---H-TT---CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHH
T ss_pred cCcEecCCCC-CCCCCCHHHHHHHHHHHHHhh---c-CC---CeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence 3455666553 334444455555555555421 0 12 38999999999999986654 577887777666555
Q ss_pred HHHHHHHcC-CCcEEEEecCcc-CCCCCCCccEEEeccccccccccHHHHHHHHHh--hcCCCeEEEEEcCC
Q 013393 81 QIQFALERG-IPSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELDR--LLRPGGYFVYSSPE 148 (444)
Q Consensus 81 ~i~~a~e~~-~~~~~~~~d~~~-lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~r--vLkPGG~lvis~p~ 148 (444)
+.+. ...+ .++.+...|... ++.++++||+|++... ++ ..+...+++++.+ +|+|||+++++...
T Consensus 94 ~~~~-~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p-~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 94 IKNL-ATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP-FR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp HHHH-HHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred HHHH-HHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC-CC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 4332 3334 367888888766 5666678999998763 33 3566778888865 59999999997654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-11 Score=114.96 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=69.8
Q ss_pred CeEEEECCCcch----HHHHHhhC--------CceEEEcCcccchHHHHHHHHHcC------------------------
Q 013393 46 RNVLDVGCGVAS----FGAYLLSH--------DIIAMSLAPNDVHENQIQFALERG------------------------ 89 (444)
Q Consensus 46 ~rVLDVGCGtG~----~a~~La~~--------~V~gvdis~~dis~a~i~~a~e~~------------------------ 89 (444)
.+|||+|||||. ++..|++. .|+|+|+++ .+++.|++.-
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~-----~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~ 181 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT-----EVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGP 181 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH-----HHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTT
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCH-----HHHHHHHhcCCchhhhhcCCHHHHHHHhhccccC
Confidence 489999999997 66666542 355665555 4445554420
Q ss_pred ------------CCcEEEEecCccCCCC-CCCccEEEeccccccccccH--HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 90 ------------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 90 ------------~~~~~~~~d~~~lp~~-~~sFDlI~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+.|...|....|++ .++||+|+|.+ +++|.++. .+++.++++.|+|||+|++....
T Consensus 182 ~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crn-vliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 182 HEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN-VMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp SCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS-SGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred CCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECC-chHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 1467888887776665 57899999998 46665554 68999999999999999995433
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-11 Score=108.15 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=85.4
Q ss_pred CCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHH
Q 013393 5 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQI 82 (444)
Q Consensus 5 g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i 82 (444)
+..+..+.+ +........+.+.+.+.. .++++ .+|||+|||+|.++..+++. .++++|+++.++..+..
T Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~---~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~ 81 (171)
T 1ws6_A 11 GVALKVPAS---ARPSPVRLRKALFDYLRL---RYPRR---GRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKE 81 (171)
T ss_dssp TCEECCCTT---CCCCCHHHHHHHHHHHHH---HCTTC---CEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHH
T ss_pred CeEecCCCC---CCCCHHHHHHHHHHHHHh---hccCC---CeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 444555554 444455566655555542 11122 38999999999999999875 36777777665544443
Q ss_pred HHHHHcCCCcEEEEecCcc-CC-CC--CCCccEEEeccccccccccHHHHHHHHH--hhcCCCeEEEEEcCCC
Q 013393 83 QFALERGIPSTLGVLGTKR-LP-YP--SRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSPEA 149 (444)
Q Consensus 83 ~~a~e~~~~~~~~~~d~~~-lp-~~--~~sFDlI~~~~~~l~~~~d~~~~L~ei~--rvLkPGG~lvis~p~~ 149 (444)
+.. ..+.++.+...|... ++ .+ .++||+|+++.. ++ .+...+++.+. ++|||||+++++.+..
T Consensus 82 ~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~-~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 82 NVR-RTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP-YA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHH-HHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC-TT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred HHH-HcCCceEEEeccHHHHHHhhhccCCceEEEEECCC-Cc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 322 234477888888655 22 11 347999999863 33 45556777777 9999999999987653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=117.82 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=76.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..++++ .|+|+|++ .++..+. +.++..+. .+.+...|+..++++ ++||+|+|.. +.+
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~-~~~ 140 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW-MGY 140 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC-CBT
T ss_pred CEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC-hhh
Confidence 48999999999999999885 68999998 6665444 44444544 378889999998887 8899999965 233
Q ss_pred cc---ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WL---QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~---~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+. .....++.++.++|||||+++++.
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 32 457789999999999999998743
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=112.21 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=83.5
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHH-c--CCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE-R--GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e-~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
+|||+|||+|.++..+++. .++++|+++..+..+..+.... . ..++.+...|....++++++||+|++..
T Consensus 102 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~-- 179 (280)
T 1i9g_A 102 RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM-- 179 (280)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES--
T ss_pred EEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC--
Confidence 8999999999999988763 5788887776655554433333 1 2467888889888888788999999743
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh-cCeEEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKIV 175 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~-~gf~~v 175 (444)
++...++.++.++|+|||++++..+.. ....++.+.+++ .+|...
T Consensus 180 ----~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~~~f~~~ 225 (280)
T 1i9g_A 180 ----LAPWEVLDAVSRLLVAGGVLMVYVATV--------TQLSRIVEALRAKQCWTEP 225 (280)
T ss_dssp ----SCGGGGHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHHSSBCCC
T ss_pred ----cCHHHHHHHHHHhCCCCCEEEEEeCCH--------HHHHHHHHHHHhcCCcCCc
Confidence 355689999999999999999987652 223344444444 677543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-10 Score=109.27 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=83.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEc-CcccchHHHHHHH----HHcC------CCcEEEEecCccCC--C----C
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSL-APNDVHENQIQFA----LERG------IPSTLGVLGTKRLP--Y----P 105 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdi-s~~dis~a~i~~a----~e~~------~~~~~~~~d~~~lp--~----~ 105 (444)
++|||+|||+|.++..+++. .|+++|+ ++.++..++.+.. ...+ .++.+...+..... + +
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTG 160 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHS
T ss_pred CeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhcc
Confidence 38999999999999988874 5788888 6766655543331 2222 24555544432211 1 3
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhhcC---C--CeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-eEEEeee
Q 013393 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLR---P--GGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKK 178 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLk---P--GG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g-f~~v~~~ 178 (444)
+++||+|+++.+ +++.++...+++++.++|+ | ||.+++......... ......+.+.+++.| |++....
T Consensus 161 ~~~fD~Ii~~dv-l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~---~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 161 LQRFQVVLLADL-LSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHL---AERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp CSSBSEEEEESC-CSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------CTHHHHHHHHSTTEEEEEEE
T ss_pred CCCCCEEEEeCc-ccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeeccc---chhHHHHHHHHHhcCCEEEEEec
Confidence 578999999884 6667888999999999999 9 998776533321110 011235566788899 9876553
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=116.04 Aligned_cols=123 Identities=14% Similarity=0.053 Sum_probs=85.4
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
..+|||||||+|.++..++++ .++++|+ + .+++.+++ ..++.+...|+.. |+|++ |+|+++.+ +|
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~-~~~v~~~~~d~~~-~~p~~--D~v~~~~v-lh 272 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P-----HVIQDAPA-FSGVEHLGGDMFD-GVPKG--DAIFIKWI-CH 272 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCC-CTTEEEEECCTTT-CCCCC--SEEEEESC-GG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H-----HHHHhhhh-cCCCEEEecCCCC-CCCCC--CEEEEech-hh
Confidence 358999999999999999873 3556655 3 33344433 2568888888776 77754 99999984 66
Q ss_pred ccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCC--h-hh-------H-----------HHHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHD--P-EN-------R-----------RIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~--~-~~-------~-----------~~~~~l~~l~~~~gf~~v~~ 177 (444)
+.++. ..+|++++++|||||++++.+....... . .. . ..-.++.++++++||+.+..
T Consensus 273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~ 352 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKV 352 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEE
Confidence 54554 3789999999999999999764322111 0 00 0 01236788999999987765
Q ss_pred e
Q 013393 178 K 178 (444)
Q Consensus 178 ~ 178 (444)
.
T Consensus 353 ~ 353 (368)
T 3reo_A 353 A 353 (368)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-11 Score=109.56 Aligned_cols=98 Identities=11% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+.+|||+|||+|.++..++.. .++++|+++.++.-+..+ +...+....+.+.|.... .+.++||+|.+.. ++|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~-~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k-~LH 126 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSI-IGKLKTTIKYRFLNKESD-VYKGTYDVVFLLK-MLP 126 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHH-HHHSCCSSEEEEECCHHH-HTTSEEEEEEEET-CHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCccEEEeccccc-CCCCCcChhhHhh-HHH
Confidence 348999999999999999653 566666665555443322 333355545656665444 3568899999888 688
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
++++.+..+.++.+.|||||.|+-.
T Consensus 127 lL~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEe
Confidence 8866667778999999999998853
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=114.12 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=74.8
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccc--c
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC--R 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~--~ 118 (444)
.+|||||||+|.++..++++ .|+++|+++ ++..+. +.+...+. ++.+...|...+++++++||+|+|... .
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHH-HHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence 38999999999999999874 588999984 544333 34444443 478888999888888789999998742 2
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+.+......++.++.++|||||+++.
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 118 LLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 33445677899999999999999984
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-11 Score=120.65 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=74.7
Q ss_pred CCeEEEECCC------cchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC------CC
Q 013393 45 IRNVLDVGCG------VASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP------SR 107 (444)
Q Consensus 45 ~~rVLDVGCG------tG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~------~~ 107 (444)
..+||||||| +|..+..+++ ..|+|+|+++.+. ....++.+.++|..++|+. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 3489999999 7666665554 3789999998752 2356789999999888876 68
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+||+|+|.. .|+..+...+|++++++|||||++++.+..
T Consensus 288 sFDlVisdg--sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 288 PFDIVIDDG--SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CEEEEEECS--CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CccEEEECC--cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999999875 355678889999999999999999997643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=112.65 Aligned_cols=126 Identities=19% Similarity=0.172 Sum_probs=85.5
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecc---
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSR--- 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~--- 116 (444)
.+|||+|||+|..+..+++ ..|+++|+++..+..+..+.. ..+. ++.+...|...++..+++||+|++..
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~-~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLS-RLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 198 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH-HHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH-HhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence 3899999999999999885 247888887766655443332 2344 67888888877765457899999841
Q ss_pred --cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 117 --CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 117 --~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..++..++ ...+|.++.++|||||++++++-..... +. -..+..++++.+|+.+..
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~--En---e~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE--EN---EFVIQWALDNFDVELLPL 272 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHSSEEEECC
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH--Hh---HHHHHHHHhcCCCEEecC
Confidence 11222121 1488999999999999999987554321 11 124566777888877643
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=111.85 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=71.7
Q ss_pred CeEEEECCCcchHHHHHhhC--C---ceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--D---IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~---V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..+++. . |+++|+++..+..+..+. ...+ .++.+...|....+.++++||+|++... +
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~-~ 154 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-ERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG-V 154 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB-B
T ss_pred CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCeEEEECChhhccccCCCeEEEEEcCC-H
Confidence 38999999999999998863 3 888888876665544333 2334 3578888888775555678999999884 6
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++.. .++.++|||||+++++..+
T Consensus 155 ~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 155 DEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp SCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred HHHH------HHHHHhcCCCcEEEEEECC
Confidence 6654 5788999999999997544
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-10 Score=109.90 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=84.2
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..+ +...+. ++.+...|.... +++++||+|++..
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~-- 189 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDISEG-FDEKDVDALFLDV-- 189 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECC--
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH-HHHcCCCCCEEEEECCHHHc-ccCCccCEEEECC--
Confidence 38999999999999888763 467777766555444322 222243 567777787665 5667899999743
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
++...++.++.++|+|||++++..+.. ....++.+.+++.||..+...
T Consensus 190 ----~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 190 ----PDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp ----SCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEEEE
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceeEEE
Confidence 455689999999999999999987642 234566677788999766543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-10 Score=103.90 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=68.0
Q ss_pred CeEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC----------------
Q 013393 46 RNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------------- 103 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp---------------- 103 (444)
.+|||+|||+|.++..++++ .|+|+|+++.. ...++.+...|....+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~ 92 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNN 92 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------C
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccch
Confidence 38999999999999998763 48899998832 1235677788877765
Q ss_pred ---------CCCCCccEEEecccccccc----ccHH-------HHHHHHHhhcCCCeEEEEEcC
Q 013393 104 ---------YPSRSFELAHCSRCRIDWL----QRDG-------ILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 104 ---------~~~~sFDlI~~~~~~l~~~----~d~~-------~~L~ei~rvLkPGG~lvis~p 147 (444)
+++++||+|+|..+ +++. .+.. .+++++.++|||||.|++...
T Consensus 93 ~~~~~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 93 SVDYKLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 56679999999763 5542 2222 378999999999999998653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-10 Score=106.95 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=73.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH--------cCCCcEEEEecCcc-CC--CCCCCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE--------RGIPSTLGVLGTKR-LP--YPSRSFE 110 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e--------~~~~~~~~~~d~~~-lp--~~~~sFD 110 (444)
.+|||||||+|.++..+++. .++|+|+++..+..+..+.... ...++.+...|+.. ++ +++++||
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d 130 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLS 130 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEE
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccC
Confidence 48999999999999999873 5889988887765555433332 22467888888765 66 7788999
Q ss_pred EEEecccccccccc--------HHHHHHHHHhhcCCCeEEEEEcC
Q 013393 111 LAHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 111 lI~~~~~~l~~~~d--------~~~~L~ei~rvLkPGG~lvis~p 147 (444)
.|+.... -.|... ...++.++.++|+|||+|++.+.
T Consensus 131 ~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 131 KMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 9986531 122110 04799999999999999999643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=107.29 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=67.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .++++|+++.. ++.++++.. ++.+...|......++++||+|++..+ ++
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~-----~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-~~ 145 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIVDKVVSVEINEKM-----YNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWAT-AP 145 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEEESCHHH-----HHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSB-BS
T ss_pred CEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHH-----HHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCc-HH
Confidence 38999999999999999874 56777666544 444444311 678888887663324678999999884 66
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+.. .++.++|||||+++++.+.
T Consensus 146 ~~~------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 146 TLL------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp SCC------HHHHHTEEEEEEEEEEECS
T ss_pred HHH------HHHHHHcCCCcEEEEEEcC
Confidence 644 3789999999999998665
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.5e-10 Score=110.24 Aligned_cols=119 Identities=16% Similarity=0.049 Sum_probs=87.0
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..++. ..++|+|+++.++..+..+ +...+. ++.+...|+..++.+.++||+|+|+....
T Consensus 205 ~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n-~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg 283 (354)
T 3tma_A 205 MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREA-ALASGLSWIRFLRADARHLPRFFPEVDRILANPPHG 283 (354)
T ss_dssp CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHH-HHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSC
T ss_pred CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHH-HHHcCCCceEEEeCChhhCccccCCCCEEEECCCCc
Confidence 3799999999999988876 4789999988777665543 333444 68899999999887777899999964211
Q ss_pred c-------ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 120 D-------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 120 ~-------~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. .......+++++.++|||||.+++.++.. ..+..+.+ .||+....
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~-----------~~~~~~~~-~g~~~~~~ 336 (354)
T 3tma_A 284 LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP-----------ALLKRALP-PGFALRHA 336 (354)
T ss_dssp C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH-----------HHHHHHCC-TTEEEEEE
T ss_pred CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH-----------HHHHHHhh-cCcEEEEE
Confidence 1 11123679999999999999999987651 12344555 78877654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=113.15 Aligned_cols=123 Identities=19% Similarity=0.114 Sum_probs=85.6
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
..+|||||||+|.++..++++ .++++|+ + .+++.|++ ..++.+...|+.. |+|.+ |+|+++.+ +|
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~-~~~v~~~~~D~~~-~~p~~--D~v~~~~v-lh 270 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P-----HVISEAPQ-FPGVTHVGGDMFK-EVPSG--DTILMKWI-LH 270 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCC-CTTEEEEECCTTT-CCCCC--SEEEEESC-GG
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H-----HHHHhhhh-cCCeEEEeCCcCC-CCCCC--CEEEehHH-hc
Confidence 358999999999999999873 3556665 3 33333333 2568898999876 77754 99999985 66
Q ss_pred ccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCCC---hh-------hH-----------HHHHHHHHHHHhcCeEEEee
Q 013393 121 WLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHD---PE-------NR-----------RIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 121 ~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~~---~~-------~~-----------~~~~~l~~l~~~~gf~~v~~ 177 (444)
+.++. ..+|++++++|||||++++.+....... .. +. ..-.++.++++++||+.+..
T Consensus 271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~ 350 (364)
T 3p9c_A 271 DWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKS 350 (364)
T ss_dssp GSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEE
Confidence 54443 4899999999999999999764422110 00 00 01236788999999987765
Q ss_pred e
Q 013393 178 K 178 (444)
Q Consensus 178 ~ 178 (444)
.
T Consensus 351 ~ 351 (364)
T 3p9c_A 351 T 351 (364)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.7e-11 Score=119.93 Aligned_cols=123 Identities=15% Similarity=0.025 Sum_probs=84.9
Q ss_pred CCeEEEECCCcchHHHHHhhC--C--ceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--D--IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~--V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
..+|||||||+|.++..++++ . ++++|+ + .+++.+++. .++.+...|+.. ++++ ||+|+++. ++|
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~-~lh 278 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-P-----QVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKA-VCH 278 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEES-SGG
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-H-----HHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEec-ccc
Confidence 348999999999999999874 2 344455 3 344444332 457888888766 6664 99999998 477
Q ss_pred ccccHH--HHHHHHHhhcCCCeEEEEEcCCCC--CCCh--h----hHH------------HHHHHHHHHHhcCeEEEeee
Q 013393 121 WLQRDG--ILLLELDRLLRPGGYFVYSSPEAY--AHDP--E----NRR------------IWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 121 ~~~d~~--~~L~ei~rvLkPGG~lvis~p~~~--~~~~--~----~~~------------~~~~l~~l~~~~gf~~v~~~ 178 (444)
+.++.. .+|+++.++|||||++++.+.... ...+ . ... ...++.++++++||+.+...
T Consensus 279 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 358 (372)
T 1fp1_D 279 NWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 358 (372)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 767777 999999999999999998752211 1100 0 000 12367788888888766543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=103.33 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=72.4
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CCCC--CCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYP--SRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp~~--~~sFDlI~~~ 115 (444)
++|||||||+|..+..+++. .|+++|+++..+..++..+ .+.+. ++.+...|+.+ ++.. .++||+|++.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENL-QLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 48999999999999999874 5778887776655544333 22333 57888888655 3432 3489999986
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
. ...+...+++++.++|||||++++....
T Consensus 144 ~----~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 144 A----DKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp S----CGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred C----chHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 4 2356678999999999999999986544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-10 Score=113.19 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=73.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..++++ .|+++|+++ ++.. ..+.++..+ .++.+...|...++++ ++||+|+|.....+
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~-a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~ 128 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQH-AEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM 128 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHH-HHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTT
T ss_pred CEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHH-HHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhc
Confidence 48999999999999998874 688999885 5433 333444444 4678888998888766 67999999874333
Q ss_pred cc-ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 121 WL-QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 121 ~~-~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+. ++....+.++.++|||||.++++.
T Consensus 129 ~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 129 LFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp BTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 32 345678889999999999999643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=108.55 Aligned_cols=116 Identities=11% Similarity=0.068 Sum_probs=78.5
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-------CC--CcEEEEecCccC-------CCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-------GI--PSTLGVLGTKRL-------PYP 105 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-------~~--~~~~~~~d~~~l-------p~~ 105 (444)
.+|||+|||+|.++..++++ .++++|+++. +++.|+++ +. ++.+...|...+ +++
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~-----~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 112 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLEKAEVTLYERSQE-----MAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP 112 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHH-----HHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred CEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence 48999999999999998874 4566666554 44444443 22 267888887766 356
Q ss_pred CCCccEEEecccccc----------------c-cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHH
Q 013393 106 SRSFELAHCSRCRID----------------W-LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 168 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~----------------~-~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~ 168 (444)
+++||+|+|+.-... . ..+...+++++.++|||||+|++..+.. ...++.+.++
T Consensus 113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~ 183 (260)
T 2ozv_A 113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---------SVAEIIAACG 183 (260)
T ss_dssp TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---------GHHHHHHHHT
T ss_pred CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---------HHHHHHHHHH
Confidence 789999999731111 0 1236789999999999999999865431 2345666666
Q ss_pred hcCeEEEe
Q 013393 169 SMCWKIVS 176 (444)
Q Consensus 169 ~~gf~~v~ 176 (444)
+. |....
T Consensus 184 ~~-~~~~~ 190 (260)
T 2ozv_A 184 SR-FGGLE 190 (260)
T ss_dssp TT-EEEEE
T ss_pred hc-CCceE
Confidence 54 65443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-10 Score=103.03 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=68.5
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++ ..++++|+++..+..+..........++.+...|.......+++||+|++..+ ++
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-~~ 157 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA-GP 157 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSB-BS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCc-hH
Confidence 3899999999999988876 35788887776655444333322223577777776432222578999999884 66
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+.. .++.++|||||++++..+.
T Consensus 158 ~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 158 KIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SCC------HHHHHTEEEEEEEEEEESS
T ss_pred HHH------HHHHHHcCCCcEEEEEECC
Confidence 544 4889999999999998665
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=116.16 Aligned_cols=100 Identities=7% Similarity=-0.008 Sum_probs=73.1
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHH--HHHHHHH----cC---CCcEEEEecCccC--CC--CCCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHEN--QIQFALE----RG---IPSTLGVLGTKRL--PY--PSRS 108 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a--~i~~a~e----~~---~~~~~~~~d~~~l--p~--~~~s 108 (444)
.+|||||||+|.++..+++. .|+|+|+++..+..+ |++.+++ .+ .++.+...|.... ++ ..++
T Consensus 244 ~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~ 323 (433)
T 1u2z_A 244 DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQ 323 (433)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGG
T ss_pred CEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccCC
Confidence 38999999999999998872 589999998776555 3333333 34 4567766654322 22 2468
Q ss_pred ccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 109 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 109 FDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
||+|+++.. + +.++...+|.++.++|||||.+++..+
T Consensus 324 FDvIvvn~~-l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 324 CDVILVNNF-L-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp CSEEEECCT-T-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred CCEEEEeCc-c-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 999998763 3 447788899999999999999999643
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=7.5e-11 Score=105.69 Aligned_cols=121 Identities=17% Similarity=0.052 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcE
Q 013393 19 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PST 93 (444)
Q Consensus 19 ~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~ 93 (444)
...+...+.+.+.+.. +.+ ..+|||+|||+|.++..+++. .++++|+++.++..++. .++..+. ++.
T Consensus 13 p~~~~~~~~~~~~l~~----~~~---~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~ 84 (177)
T 2esr_A 13 PTSDKVRGAIFNMIGP----YFN---GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFT 84 (177)
T ss_dssp -----CHHHHHHHHCS----CCC---SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEE
T ss_pred cCHHHHHHHHHHHHHh----hcC---CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceE
Confidence 3344455555555541 122 348999999999999998875 46777766655543332 2222333 467
Q ss_pred EEEecCcc-CCCCCCCccEEEeccccccccccHHHHHHHHH--hhcCCCeEEEEEcCCC
Q 013393 94 LGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSPEA 149 (444)
Q Consensus 94 ~~~~d~~~-lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~--rvLkPGG~lvis~p~~ 149 (444)
+...|..+ ++..+++||+|+++.. .+. .....++..+. ++|||||+++++.+..
T Consensus 85 ~~~~d~~~~~~~~~~~fD~i~~~~~-~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 85 LLKMEAERAIDCLTGRFDLVFLDPP-YAK-ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp EECSCHHHHHHHBCSCEEEEEECCS-SHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EEECcHHHhHHhhcCCCCEEEECCC-CCc-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 77777655 3433467999998753 322 44567777776 9999999999977553
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=107.17 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=81.8
Q ss_pred CeEEEECCCcchHHHHHhh--------CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC---CCCC-CCccEEE
Q 013393 46 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPS-RSFELAH 113 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--------~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l---p~~~-~sFDlI~ 113 (444)
.+|||||||+|..+..|++ ..|+++|+++.++..+. ....++.+...|.... ++.+ .+||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 3899999999999988865 36899999988764443 3345788888887764 5433 4799999
Q ss_pred eccccccccccHHHHHHHHHh-hcCCCeEEEEEcCCCCCCChhhH-HHHHHHHHHHHhc--CeEEE
Q 013393 114 CSRCRIDWLQRDGILLLELDR-LLRPGGYFVYSSPEAYAHDPENR-RIWNAMYDLLKSM--CWKIV 175 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~r-vLkPGG~lvis~p~~~~~~~~~~-~~~~~l~~l~~~~--gf~~v 175 (444)
+... | .+...++.++.+ +|||||++++.+.. +... ..-..+.+++++. +|+..
T Consensus 158 ~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~~-----~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 158 IDNA--H--ANTFNIMKWAVDHLLEEGDYFIIEDMI-----PYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EESS--C--SSHHHHHHHHHHHTCCTTCEEEECSCH-----HHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred ECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEeCc-----ccccccCHHHHHHHHHhCcccEEEc
Confidence 8653 2 467889999997 99999999996541 1000 0112566677766 46543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=104.39 Aligned_cols=125 Identities=13% Similarity=0.176 Sum_probs=80.4
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC---CCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp---~~~~sFDlI~~~~~ 117 (444)
.+|||+|||+|.++..+++ ..|+++|+++.++..+. +.+++. .++.+...|..... ..+++||+|++...
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 152 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence 3899999999999998875 35788888776553333 233322 57788888876621 12468999998652
Q ss_pred cccccccH-HHHHHHHHhhcCCCeEEEEEcCCCC-CCChhhHHHH-HHHHHHHHhcCeEEEeee
Q 013393 118 RIDWLQRD-GILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIW-NAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 ~l~~~~d~-~~~L~ei~rvLkPGG~lvis~p~~~-~~~~~~~~~~-~~l~~l~~~~gf~~v~~~ 178 (444)
. ++. ..++.++.++|||||++++...... .......... .++..+ ++. |+.+...
T Consensus 153 ---~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~ 210 (227)
T 1g8a_A 153 ---Q-PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERL 210 (227)
T ss_dssp ---S-TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEE
T ss_pred ---C-HhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEe
Confidence 2 333 3559999999999999998732211 1111111222 355666 555 8877553
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.8e-12 Score=117.26 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=74.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+..+ +...+. ++.+...|...++ ++++||+|+++. .+++
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~-~~~~ 156 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNN-AEVYGIADKIEFICGDFLLLA-SFLKADVVFLSP-PWGG 156 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECC-CCSS
T ss_pred CEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCcCeEEEECChHHhc-ccCCCCEEEECC-CcCC
Confidence 38999999999999999885 577887777666544432 333343 6888899987776 567999999987 4666
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEE
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
..+....+.++.++|+|||++++.
T Consensus 157 ~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 PDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp GGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred cchhhhHHHHHHhhcCCcceeHHH
Confidence 666666888999999999997763
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-10 Score=106.04 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=71.2
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CCCC-----CCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYP-----SRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp~~-----~~sFDlI 112 (444)
++|||||||+|..+..+++. .|+++|+++.++..+..+.. ..+. ++.+...|..+ ++.. .++||+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN-FAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH-HcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 48999999999999999873 57888887766655543332 2343 47888888644 3322 2689999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++... .++..+...++.++ ++|||||++++....
T Consensus 139 ~~d~~-~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 139 FLDHW-KDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EECSC-GGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEcCC-cccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 98763 44445555678777 999999999986543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=115.40 Aligned_cols=122 Identities=10% Similarity=0.028 Sum_probs=85.9
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..++++ .++++|+ + .+++.+++. .++.+...|+.. ++|+ ||+|+++. ++|+
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~-~lh~ 258 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P-----QVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKY-ILHN 258 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEES-CGGG
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H-----HHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeeh-hhcc
Confidence 48999999999999999864 4666665 4 344444433 347888888755 5553 99999998 4776
Q ss_pred cccHH--HHHHHHHhhcCC---CeEEEEEcCCCCCCCh-----hhH--------------HHHHHHHHHHHhcCeEEEee
Q 013393 122 LQRDG--ILLLELDRLLRP---GGYFVYSSPEAYAHDP-----ENR--------------RIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~~d~~--~~L~ei~rvLkP---GG~lvis~p~~~~~~~-----~~~--------------~~~~~l~~l~~~~gf~~v~~ 177 (444)
.++.. .+|+++.++||| ||++++.++....... ... ..-.++.++++++||+.+..
T Consensus 259 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 338 (352)
T 1fp2_A 259 WTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 338 (352)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEE
Confidence 67777 999999999999 9999997643211110 000 11246788888899877654
Q ss_pred e
Q 013393 178 K 178 (444)
Q Consensus 178 ~ 178 (444)
.
T Consensus 339 ~ 339 (352)
T 1fp2_A 339 S 339 (352)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.5e-10 Score=104.20 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=68.8
Q ss_pred eEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCC-CccEEEecccccccc
Q 013393 47 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR-SFELAHCSRCRIDWL 122 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~-sFDlI~~~~~~l~~~ 122 (444)
+|||+|||+|.++..+++ ..|+++|+++..+..+..+.......++.+...|. ..+++++ .||+|++... +++.
T Consensus 94 ~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~-~~~~ 171 (235)
T 1jg1_A 94 NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAG-APKI 171 (235)
T ss_dssp CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSB-BSSC
T ss_pred EEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCc-HHHH
Confidence 899999999999998877 47888888876655544333322223577777776 4455544 4999999874 5554
Q ss_pred ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 123 QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 123 ~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
. .++.++|||||+++++.+..
T Consensus 172 ~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 172 P------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp C------HHHHHTEEEEEEEEEEECSS
T ss_pred H------HHHHHhcCCCcEEEEEEecC
Confidence 3 37899999999999987653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.3e-10 Score=110.06 Aligned_cols=127 Identities=7% Similarity=0.026 Sum_probs=84.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccCCC----CCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPY----PSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~lp~----~~~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+..+... .+. ++.+...|+..+.. ..++||+|++..
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~-~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 38999999999999999875 577777776665555433332 233 37788888655421 146899999843
Q ss_pred c---------cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 117 C---------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 117 ~---------~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
- +.++..+...++.++.++|||||++++.......... ......+.+.+++.|+++.
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~--~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASF--YSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCH--HHHHHHHHHHTTTSCSEEE
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCH--HHHHHHHHHHHHHcCCeEE
Confidence 1 1223455678999999999999998876544322221 1222344556678888665
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.3e-10 Score=111.02 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=74.4
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cCCCcEEEEecCccC--CCCCCCccEEEe
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL--PYPSRSFELAHC 114 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~l--p~~~~sFDlI~~ 114 (444)
+++|||||||+|.++..+++. .|+++|+++..+..++..+... ...++.+...|.... .+++++||+|++
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~ 200 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 200 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence 458999999999999999874 5777777776554444333221 134678888886553 234678999998
Q ss_pred cccccccc-cc---HHHHHHHHHhhcCCCeEEEEEcCCCCC
Q 013393 115 SRCRIDWL-QR---DGILLLELDRLLRPGGYFVYSSPEAYA 151 (444)
Q Consensus 115 ~~~~l~~~-~d---~~~~L~ei~rvLkPGG~lvis~p~~~~ 151 (444)
... .++. .+ ...+++++.++|||||++++.....+.
T Consensus 201 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 240 (334)
T 1xj5_A 201 DSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWL 240 (334)
T ss_dssp CCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred CCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence 642 2221 11 368999999999999999998655443
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-10 Score=104.33 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=70.0
Q ss_pred eEEEECCCcchHHHHHhh----------CCceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCC-CCcc
Q 013393 47 NVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPS-RSFE 110 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----------~~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~-~sFD 110 (444)
+|||+|||+|.++..+++ ..|+++|+++..+..+..+..... ..++.+...|... ++++ ++||
T Consensus 87 ~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD 165 (227)
T 1r18_A 87 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAPYN 165 (227)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCSEE
T ss_pred EEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCCcc
Confidence 899999999999988876 268888888776655554433322 3467888888765 4544 7899
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+|++... +++. +.++.+.|||||++++....
T Consensus 166 ~I~~~~~-~~~~------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 166 AIHVGAA-APDT------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEECSC-BSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred EEEECCc-hHHH------HHHHHHHhcCCCEEEEEEec
Confidence 9999874 5543 37899999999999997654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7e-10 Score=107.79 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=68.0
Q ss_pred eEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHHH--HHHcCCCcEEE--EecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQF--ALERGIPSTLG--VLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~~--a~e~~~~~~~~--~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+|||+|||+|.++..++++ .|+|+|+++ +...+..+. ....+.++.+. ..|+..+| +++||+|+|..+ ++
T Consensus 85 ~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~--~~ 159 (276)
T 2wa2_A 85 TVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG--ES 159 (276)
T ss_dssp EEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC--CC
T ss_pred EEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC--cC
Confidence 8999999999999999884 799999998 432111000 00011256777 77887776 678999999763 32
Q ss_pred ccc----HH---HHHHHHHhhcCCCe--EEEEEcCC
Q 013393 122 LQR----DG---ILLLELDRLLRPGG--YFVYSSPE 148 (444)
Q Consensus 122 ~~d----~~---~~L~ei~rvLkPGG--~lvis~p~ 148 (444)
..+ .. .+|.++.++||||| .|++....
T Consensus 160 ~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 160 NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 222 11 37899999999999 99986544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-10 Score=106.44 Aligned_cols=97 Identities=7% Similarity=0.109 Sum_probs=72.8
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC-CCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-YPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-~~~~sFDlI~~~~~ 117 (444)
++|||+|||+|.++..+++. .++++|+++..+..++... .+.+. ++.+...|... ++ ..+++||+|++..
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~- 150 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNL-ATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA- 150 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET-
T ss_pred CEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC-
Confidence 48999999999999999872 5778888776665554333 33343 68888888755 33 3368899999764
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
...+...+++++.++|||||++++...
T Consensus 151 ---~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 151 ---AKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp ---TSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred ---cHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 235677899999999999999998543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=101.85 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=80.8
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+....+ ..+ .++.+...|......++++||+|++..
T Consensus 93 ~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~----- 166 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-KFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV----- 166 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHH-HTTCCTTEEEECSCTTTSCCCTTCBSEEEECS-----
T ss_pred CEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCCcEEEEEcChhhcccCCCcccEEEECC-----
Confidence 38999999999999998873 56777766655444432222 223 357777777766443567899999743
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
++...+++++.++|||||++++..+.. ....++.+.+++. |..+..
T Consensus 167 -~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~-f~~~~~ 212 (248)
T 2yvl_A 167 -REPWHYLEKVHKSLMEGAPVGFLLPTA--------NQVIKLLESIENY-FGNLEV 212 (248)
T ss_dssp -SCGGGGHHHHHHHBCTTCEEEEEESSH--------HHHHHHHHHSTTT-EEEEEE
T ss_pred -cCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHhh-CCcceE
Confidence 456688999999999999999987652 2344566666666 765443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-10 Score=103.57 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=70.3
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
+|||+|||+|.++..+++ ..|+++|+++..+..+..+..... ..++.+...|....+.++++||+|++..
T Consensus 80 ~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 159 (226)
T 1i1n_A 80 KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGA 159 (226)
T ss_dssp EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred EEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEECC
Confidence 899999999999998875 268888888766655543332211 2367888888776555567899999887
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
. ++. ++.++.++|||||+++++...
T Consensus 160 ~-~~~------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 160 A-APV------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp B-BSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred c-hHH------HHHHHHHhcCCCcEEEEEEec
Confidence 4 433 346889999999999997654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-10 Score=107.36 Aligned_cols=103 Identities=15% Similarity=0.073 Sum_probs=67.6
Q ss_pred CeEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHc--CC--C------------------------
Q 013393 46 RNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER--GI--P------------------------ 91 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~--~~--~------------------------ 91 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+..+..... +. .
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAAR 132 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhh
Confidence 48999999999999988764 46777776665544432221110 11 1
Q ss_pred -cE-------------EEEecCccCCC-----CCCCccEEEecccccccc--------ccHHHHHHHHHhhcCCCeEEEE
Q 013393 92 -ST-------------LGVLGTKRLPY-----PSRSFELAHCSRCRIDWL--------QRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 92 -~~-------------~~~~d~~~lp~-----~~~sFDlI~~~~~~l~~~--------~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+. +...|...... ..++||+|+|+...++.. .....+++++.++|||||++++
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 133 RLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp HHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred hhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 34 77788655321 345899999976322221 2345899999999999999999
Q ss_pred EcCC
Q 013393 145 SSPE 148 (444)
Q Consensus 145 s~p~ 148 (444)
+...
T Consensus 213 ~~~~ 216 (250)
T 1o9g_A 213 TDRS 216 (250)
T ss_dssp EESS
T ss_pred eCcc
Confidence 5443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-09 Score=107.22 Aligned_cols=125 Identities=16% Similarity=0.116 Sum_probs=86.3
Q ss_pred CCeEEEECCCcchHHHHHhhC--C--ceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCCCccEEEec
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--D--IIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~--V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
.++|||||||+|.++..++++ + ++..|+ +..++.|++. ..++.+...|+...|.+ .+|+|+++
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl------p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~ 251 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI------PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILA 251 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC------HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEE
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC------HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEee
Confidence 348999999999999999885 2 333333 3344444443 34678888887665554 47999999
Q ss_pred cccccccccH--HHHHHHHHhhcCCCeEEEEEcCCCCC--CChhhHH---------------HHHHHHHHHHhcCeEEEe
Q 013393 116 RCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR---------------IWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 116 ~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~--~~~~~~~---------------~~~~l~~l~~~~gf~~v~ 176 (444)
.+ +|..+|. ..+|+++++.|+|||++++.+.-... ..+.... ...++.++++++||+.+.
T Consensus 252 ~v-lh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~ 330 (353)
T 4a6d_A 252 RV-LHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330 (353)
T ss_dssp SS-GGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEE
T ss_pred ee-cccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 95 5554555 47899999999999999997643211 1111111 124788999999999876
Q ss_pred ee
Q 013393 177 KK 178 (444)
Q Consensus 177 ~~ 178 (444)
..
T Consensus 331 v~ 332 (353)
T 4a6d_A 331 FK 332 (353)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.2e-10 Score=104.47 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=70.7
Q ss_pred eEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccC-C-CCCCCccEEEecc
Q 013393 47 NVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-P-YPSRSFELAHCSR 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~l-p-~~~~sFDlI~~~~ 116 (444)
+|||||||+|..+..++++ .++++|+++..+..++..+ .+.+. ++.+...|..+. + +++++||+|++..
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF-REAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH-HHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 8999999999999988862 5788888776665554333 33343 477877775543 2 3368999999764
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
. ..+...+++++.++|||||++++...
T Consensus 138 ~----~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 138 S----PMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp C----TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred c----HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 2 35567899999999999999998543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=104.70 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=67.8
Q ss_pred eEEEECCCcchHHHHHhhC-CceEEEcCcccchHHHHH-HH-HHcCCCcEEE--EecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQ-FA-LERGIPSTLG--VLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-~V~gvdis~~dis~a~i~-~a-~e~~~~~~~~--~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
+|||||||+|.++..+++. .|+|+|+++ +...+..+ .. ...+.++.+. ..|+..++ +++||+|+|..+ ++
T Consensus 77 ~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~--~~ 151 (265)
T 2oxt_A 77 RVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG--ES 151 (265)
T ss_dssp EEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC--CC
T ss_pred EEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc--cc
Confidence 8999999999999999884 799999998 42111000 00 0011256777 77887766 678999999763 33
Q ss_pred ccc----HH---HHHHHHHhhcCCCe--EEEEEcCC
Q 013393 122 LQR----DG---ILLLELDRLLRPGG--YFVYSSPE 148 (444)
Q Consensus 122 ~~d----~~---~~L~ei~rvLkPGG--~lvis~p~ 148 (444)
..+ .. .+|.++.++||||| .|++....
T Consensus 152 ~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 152 SPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 222 11 37899999999999 99986543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-09 Score=100.65 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=87.6
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+|||||||+|.++..+++. .|+++|+++..+..+..+. +..+. .+.+...|......+++.||+|+.....-
T Consensus 24 ~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~-~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg- 101 (230)
T 3lec_A 24 RLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNV-SEHGLTSKIDVRLANGLSAFEEADNIDTITICGMGG- 101 (230)
T ss_dssp EEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHH-HHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH-
T ss_pred EEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhhccccccccCEEEEeCCch-
Confidence 8999999999999999885 4778888877665555433 33343 47888888766555544799988654211
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.-...++.+..+.|+++|+|+++... ....+.+.+.+.||.++.+.
T Consensus 102 --~lI~~IL~~~~~~l~~~~~lIlqp~~----------~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 102 --RLIADILNNDIDKLQHVKTLVLQPNN----------REDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp --HHHHHHHHHTGGGGTTCCEEEEEESS----------CHHHHHHHHHHTTEEEEEEE
T ss_pred --HHHHHHHHHHHHHhCcCCEEEEECCC----------ChHHHHHHHHHCCCEEEEEE
Confidence 23457899999999999999997532 14578888999999988775
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-10 Score=103.14 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=70.8
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CCCCCCCccEEEeccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYPSRSFELAHCSRC 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp~~~~sFDlI~~~~~ 117 (444)
++|||+|||+|..+..+++. .++++|+++..+..+..... ..+. ++.+...|..+ ++..++ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH-DNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 48999999999999999864 57788877766554443332 2232 46777888654 354456 999998642
Q ss_pred cccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
..+...+++++.++|||||++++...
T Consensus 136 ----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 136 ----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 35678899999999999999998653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-10 Score=104.84 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=71.1
Q ss_pred CeEEEECCCcchHHHHHhhC---------CceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCC----CCCC
Q 013393 46 RNVLDVGCGVASFGAYLLSH---------DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLP----YPSR 107 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---------~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp----~~~~ 107 (444)
.+|||+|||+|.++..+++. .|+++|+++..+..+..+..... ..++.+...|..... ...+
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 161 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG 161 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence 38999999999999888762 57888888766655544333322 246788888877654 4567
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+||+|++... +++ ++.++.++|||||++++..+.
T Consensus 162 ~fD~I~~~~~-~~~------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 162 LFDAIHVGAS-ASE------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CEEEEEECSB-BSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred CcCEEEECCc-hHH------HHHHHHHhcCCCcEEEEEEcc
Confidence 8999999874 544 358889999999999997543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=105.67 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=75.0
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++. .|+++|+++..+..+..+. +.++ .++.+...|+..++. .++||+|++...
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~-~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p--- 195 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENI-KLNKLNNVIPILADNRDVEL-KDVADRVIMGYV--- 195 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHH-HHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC---
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCEEEEECChHHcCc-cCCceEEEECCc---
Confidence 38999999999999999873 6889988887776555433 3344 367888888877744 578999998763
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.+...++.++.+.|||||.++++...
T Consensus 196 --~~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 196 --HKTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp --SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred --ccHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 25567899999999999999987654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=101.19 Aligned_cols=118 Identities=12% Similarity=0.034 Sum_probs=86.3
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+|||||||+|.++..+++. .|+++|+++..+..+..+. +..+. .+.+...|......++.+||+|+.....-
T Consensus 24 ~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~-~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg- 101 (244)
T 3gnl_A 24 RIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV-RSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG- 101 (244)
T ss_dssp EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH-HHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH-
T ss_pred EEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEEecchhhccCccccccEEEEeCCch-
Confidence 8999999999999999885 4778888877665555433 33444 36788888666554444699988654211
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.-...++.+..+.|+++|+|+++... ..+.+.+.+.+.||.++.+.
T Consensus 102 --~lI~~IL~~~~~~L~~~~~lIlq~~~----------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 102 --TLIRTILEEGAAKLAGVTKLILQPNI----------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp --HHHHHHHHHTGGGGTTCCEEEEEESS----------CHHHHHHHHHHHTEEEEEEE
T ss_pred --HHHHHHHHHHHHHhCCCCEEEEEcCC----------ChHHHHHHHHHCCCEEEEEE
Confidence 23457899999999999999997532 24578888999999987654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=99.65 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=65.3
Q ss_pred CeEEEECCCcchHHHHHhhC-------------CceEEEcCcccchHHHHHHHHHcCCCcEEE-EecCccCC--------
Q 013393 46 RNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP-------- 103 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-------------~V~gvdis~~dis~a~i~~a~e~~~~~~~~-~~d~~~lp-------- 103 (444)
.+|||+|||+|.++..+++. .|+++|+++... ..++.+. ..|....+
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~~~ 92 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRILEV 92 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHHHh
Confidence 38999999999999998763 378888887421 1245666 66654432
Q ss_pred CCCCCccEEEeccc---cccccccH-------HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 104 YPSRSFELAHCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 104 ~~~~sFDlI~~~~~---~l~~~~d~-------~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+++++||+|+|..+ ..++..+. ..+++++.++|||||.|++....
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34568999998652 22333333 47899999999999999997643
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-10 Score=102.39 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=70.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccC-C-CC---CCCccEEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP---SRSFELAH 113 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l-p-~~---~~sFDlI~ 113 (444)
.+|||||||+|.++..+++. .++++|+++..+..++.... ..+. ++.+...|.... + ++ .++||+|+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE-RANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 48999999999999999875 47778777766554443332 2333 478888886442 2 11 26799999
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+... ......++.++.++|||||++++....
T Consensus 139 ~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 139 IDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 8652 345678999999999999999986554
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=103.89 Aligned_cols=98 Identities=10% Similarity=0.011 Sum_probs=75.3
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccC-CCC-----CCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYP-----SRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l-p~~-----~~sFDlI 112 (444)
++|||||||+|..+..+++. .|+++|+++..+..+..++. ..+. ++.+...|+... +.. +++||+|
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR-EAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH-HTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 48999999999999999872 68999999988766664443 3333 578888886553 221 4789999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++... ..+...+++++.++|||||++++....
T Consensus 141 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 141 FIDAD----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEESC----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEcCC----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 98652 356778999999999999999996543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-10 Score=121.31 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=74.5
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCccC--CCCCCCccEEEeccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL--PYPSRSFELAHCSRCRI 119 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~l--p~~~~sFDlI~~~~~~l 119 (444)
+.+|||||||.|.++..|++. .|+|+|+++..+..++. .|.+.+ .++.+.+.+++++ ++.+++||+|+|.. ++
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e-~~ 144 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA-LAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS-VF 144 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES-CH
T ss_pred CCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH-HHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc-ch
Confidence 348999999999999999985 57777776665544442 333444 5789999998887 46678999999999 58
Q ss_pred cccccHH--HHHHHHHhhcCCCeEEEEEc
Q 013393 120 DWLQRDG--ILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 120 ~~~~d~~--~~L~ei~rvLkPGG~lvis~ 146 (444)
+|++++. ..+..+.+.|+++|..++..
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 8888776 33556777788887666543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=105.08 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=83.2
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCC----CCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY----PSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~----~~~sFDlI~~~ 115 (444)
.+|||+|||+|..+..+++ ..|+++|+++..+..+.. .++..+. ++.+...|...++. ++++||+|++.
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d 163 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKS-NINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLD 163 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHH-HHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEc
Confidence 3899999999999998886 358888888766654443 3333344 67888888776653 25789999985
Q ss_pred c-c----ccc------------ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh-cCeEEEe
Q 013393 116 R-C----RID------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKIVS 176 (444)
Q Consensus 116 ~-~----~l~------------~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~-~gf~~v~ 176 (444)
. | .++ .......++.++.++|||||++++++........+ ..+..++++ .+|+++.
T Consensus 164 ~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene-----~~v~~~l~~~~~~~~~~ 237 (274)
T 3ajd_A 164 APCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENE-----EVIKYILQKRNDVELII 237 (274)
T ss_dssp ECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSH-----HHHHHHHHHCSSEEEEC
T ss_pred CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhH-----HHHHHHHHhCCCcEEec
Confidence 2 1 111 11345689999999999999999987665432221 234444433 4565543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.5e-10 Score=110.06 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=65.6
Q ss_pred eEEEECCCcchHHHHHhhC-CceEEEc----CcccchHHHHHHHHHcC-CCcEEEEe-cCccCCCCCCCccEEEecccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH-DIIAMSL----APNDVHENQIQFALERG-IPSTLGVL-GTKRLPYPSRSFELAHCSRCR- 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~-~V~gvdi----s~~dis~a~i~~a~e~~-~~~~~~~~-d~~~lp~~~~sFDlI~~~~~~- 118 (444)
+|||||||+|.++..++++ .|+++|+ ++.++.... ....+ ..+.+... |...++ .++||+|+|..+.
T Consensus 85 ~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~ 159 (305)
T 2p41_A 85 KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGES 159 (305)
T ss_dssp EEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCCCC
T ss_pred EEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEECCccc
Confidence 8999999999999999885 6899998 342221100 01111 23566666 666554 5689999997532
Q ss_pred -ccccccHH---HHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 -IDWLQRDG---ILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 -l~~~~d~~---~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.++..+.. .+|.++.++|||||.|++....
T Consensus 160 ~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 160 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 22323332 5789999999999999986544
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=108.72 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=68.5
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHc-----------CCCcEEEEecCccC--CCCCC
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGTKRL--PYPSR 107 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~-----------~~~~~~~~~d~~~l--p~~~~ 107 (444)
.+|||+|||+|.++..+++ ..|+++|+++..+..+..+..... ..++.+...|.... +++++
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~ 186 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSL 186 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCC
Confidence 3899999999999998876 357888888776655554433211 24678888887776 46677
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+||+|++.. .+...++.++.++|||||++++..+.
T Consensus 187 ~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 187 TFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp -EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 899999864 22334899999999999999987654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=110.69 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=83.8
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC--CCCCCccEEEe---
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHC--- 114 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~~~sFDlI~~--- 114 (444)
.+|||+|||+|..+..+++ ..++++|+++..+..+.. .+...+. ++.+...|...++ +++++||+|++
T Consensus 261 ~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~P 339 (450)
T 2yxl_A 261 ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKD-FVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAP 339 (450)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECC
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH-HHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCC
Confidence 3899999999999999886 357888777765544432 2233344 6788888877766 55578999996
Q ss_pred --ccccccccccH----------------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CeEEE
Q 013393 115 --SRCRIDWLQRD----------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 175 (444)
Q Consensus 115 --~~~~l~~~~d~----------------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~-gf~~v 175 (444)
....++..++. ..++.++.++|||||++++++...... +. -..+..++++. +|+.+
T Consensus 340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~--en---e~~v~~~l~~~~~~~~~ 414 (450)
T 2yxl_A 340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE--EN---EKNIRWFLNVHPEFKLV 414 (450)
T ss_dssp CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHCSSCEEC
T ss_pred CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh--hH---HHHHHHHHHhCCCCEEe
Confidence 22223322332 578999999999999999987654321 11 23455566654 67654
Q ss_pred e
Q 013393 176 S 176 (444)
Q Consensus 176 ~ 176 (444)
.
T Consensus 415 ~ 415 (450)
T 2yxl_A 415 P 415 (450)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-09 Score=97.86 Aligned_cols=117 Identities=13% Similarity=0.053 Sum_probs=84.6
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecC-ccCCCCCCCccEEEeccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGT-KRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~-~~lp~~~~sFDlI~~~~~~l 119 (444)
+|||||||+|.++..+++. .|+++|+++..+..+.. .++..+. ++.+...|. ..++. ...||+|+.... .
T Consensus 18 ~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG~-G 94 (225)
T 3kr9_A 18 ILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVK-NVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAGM-G 94 (225)
T ss_dssp EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEEE-C
T ss_pred EEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcCC-C
Confidence 8999999999999999885 47788888766655553 3334454 467777775 33432 226999987552 1
Q ss_pred cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 120 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 120 ~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
- .-...++.+..+.|+|+|+|+++... ....+.+.+.+.||.++.+.
T Consensus 95 g--~~i~~Il~~~~~~L~~~~~lVlq~~~----------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 95 G--RLIARILEEGLGKLANVERLILQPNN----------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp H--HHHHHHHHHTGGGCTTCCEEEEEESS----------CHHHHHHHHHHTTEEEEEEE
T ss_pred h--HHHHHHHHHHHHHhCCCCEEEEECCC----------CHHHHHHHHHHCCCEEEEEE
Confidence 1 22467899999999999999996442 24578888999999988764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.94 E-value=6.9e-10 Score=103.26 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=71.0
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccC-C-CC----CCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP----SRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l-p-~~----~~sFDlI 112 (444)
.+|||+|||+|..+..+++. .++++|+++..+..+.... ...+. ++.+...|.... + ++ .++||+|
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYW-EKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 38999999999999999874 5778888776655544333 23333 378888876432 2 11 1789999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++.. ...+...++.++.++|||||++++....
T Consensus 145 ~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 145 YIDA----DKANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EECS----CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9654 2356778999999999999999996544
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=97.98 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=75.7
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC-----------CCCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-----------SRSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-----------~~sFDlI 112 (444)
.+|||+|||+|.++..++++ .|+|+|+++... ..++.+...|+...+.. .++||+|
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~V 95 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDV 95 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEE
Confidence 38999999999999999875 689999987531 23678888887765421 1489999
Q ss_pred Eeccc---ccccccc-------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 113 HCSRC---RIDWLQR-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 113 ~~~~~---~l~~~~d-------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
+|... ...+..+ ...++.++.++|||||.|++..... + ....+...++. .|..+..
T Consensus 96 lsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~----~----~~~~~~~~l~~-~F~~v~~ 161 (191)
T 3dou_A 96 VSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG----D----MTNDFIAIWRK-NFSSYKI 161 (191)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS----T----HHHHHHHHHGG-GEEEEEE
T ss_pred ecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC----C----CHHHHHHHHHH-hcCEEEE
Confidence 99641 0111111 2467899999999999999854321 1 13455556654 4655543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=105.85 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=71.4
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cCCCcEEEEecCcc-CCCCCCCccEEEec
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHCS 115 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~-lp~~~~sFDlI~~~ 115 (444)
+++|||||||+|.++..++++ .++++|+++..+..+...+... ...++.+...|... ++..+++||+|++.
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d 175 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence 358999999999999999875 4677777766554444332221 13567888888654 34456789999986
Q ss_pred cccccccc----cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 RCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 ~~~l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
. ..++.+ ....+++++.++|||||.+++.....+
T Consensus 176 ~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 213 (304)
T 2o07_A 176 S-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW 213 (304)
T ss_dssp C-C-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred C-CCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 4 233221 124789999999999999999764433
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=112.28 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=71.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||||||+|.++..+++. .|+++|+++ ++..++ +.++..+ .++.+...|..+++++ ++||+|+|+.. ++
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~-~~ 235 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM-GY 235 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC-HH
T ss_pred CEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCc-hH
Confidence 48999999999999998874 578888776 543332 3334444 3588888998887765 58999999763 44
Q ss_pred cc--ccHHHHHHHHHhhcCCCeEEEEE
Q 013393 121 WL--QRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 121 ~~--~d~~~~L~ei~rvLkPGG~lvis 145 (444)
+. ++....+.++.++|||||++++.
T Consensus 236 ~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 236 MLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 43 33456788999999999999863
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=105.39 Aligned_cols=104 Identities=11% Similarity=0.062 Sum_probs=71.6
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHH--H--cCCCcEEEEecCcc-CCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL--E--RGIPSTLGVLGTKR-LPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~--e--~~~~~~~~~~d~~~-lp~~~~sFDlI~~~~ 116 (444)
++|||||||+|.++..+++. .++++|+++..+..++..+.. . ...++.+...|... ++..+++||+|++..
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~ 171 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS 171 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcC
Confidence 58999999999999999874 467787777655444433222 0 13467888888654 344467899999854
Q ss_pred ccccccc-----cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 117 CRIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 117 ~~l~~~~-----d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
. .++.. ....+++++.++|||||.+++...+++
T Consensus 172 ~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 209 (296)
T 1inl_A 172 T-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 209 (296)
T ss_dssp -----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred C-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcc
Confidence 1 22111 226899999999999999999865543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.6e-10 Score=108.70 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=73.6
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH-c----CCCcEEEEecCcc-CCCCCCCccEEEe
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-R----GIPSTLGVLGTKR-LPYPSRSFELAHC 114 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e-~----~~~~~~~~~d~~~-lp~~~~sFDlI~~ 114 (444)
+++|||||||+|.++..+++. .++++|+++..+..++..+... . ..++.+...|... ++..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 358999999999999999875 4777877776554444333221 1 3467888888655 3444678999999
Q ss_pred ccccccc---cc--c--HHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 115 SRCRIDW---LQ--R--DGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 115 ~~~~l~~---~~--d--~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.. ..++ .+ . ...+++++.++|||||.+++....
T Consensus 158 d~-~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 158 DL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CC-CCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 75 3443 11 1 368999999999999999997543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-09 Score=106.27 Aligned_cols=126 Identities=12% Similarity=0.072 Sum_probs=88.8
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCcc-CCC---CCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LPY---PSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~-lp~---~~~sFDlI~~~ 115 (444)
.+|||+|||+|.++..++++ .|+++|+++.++..+..+. +.++. ++.+...|+.+ ++. ..++||+|++.
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~-~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHF-EANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHH-HHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 38999999999999999873 5899999998876666443 44443 67888888655 221 24589999984
Q ss_pred cc--------cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 116 RC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 116 ~~--------~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
.- ......+...++.++.++|+|||+++++..+.... ....+..+.+.+++.|.+.+
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~i~~~~~~~g~~~~ 357 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT---VSQFKKQIEKGFGKQKHTYL 357 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC---HHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC---HHHHHHHHHHHHHHcCCcEE
Confidence 32 12223445578889999999999999987654321 12344566777888888743
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.8e-09 Score=103.72 Aligned_cols=127 Identities=11% Similarity=0.036 Sum_probs=87.5
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCcc-CCC-CCCCccEEEeccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPY-PSRSFELAHCSRC 117 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~-lp~-~~~sFDlI~~~~~ 117 (444)
..+|||+| |+|.++..++.. .|+++|+++.++..+..+ +...+. ++.+...|... +|. .+++||+|+++.
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~-~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~- 249 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKA-ANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP- 249 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC-
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEEChhhhhchhhccCCccEEEECC-
Confidence 34899999 999999888763 578888877666555433 333344 68888889877 664 356899999986
Q ss_pred cccccccHHHHHHHHHhhcCCCeE-EEEEcCCCCCCChhhHHHHHHHHHHHH-hcCeEEEeeec
Q 013393 118 RIDWLQRDGILLLELDRLLRPGGY-FVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKIVSKKD 179 (444)
Q Consensus 118 ~l~~~~d~~~~L~ei~rvLkPGG~-lvis~p~~~~~~~~~~~~~~~l~~l~~-~~gf~~v~~~~ 179 (444)
.++.. ....++.++.++|||||. ++++... .+.....|..+.++++ +.||.......
T Consensus 250 p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 308 (373)
T 2qm3_A 250 PETLE-AIRAFVGRGIATLKGPRCAGYFGITR----RESSLDKWREIQKLLLNEFNVVITDIIR 308 (373)
T ss_dssp CSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT----TTCCHHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred CCchH-HHHHHHHHHHHHcccCCeEEEEEEec----CcCCHHHHHHHHHHHHHhcCcchhhhhh
Confidence 23332 357899999999999994 3554332 1122234567777777 88987655433
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=108.90 Aligned_cols=122 Identities=9% Similarity=0.023 Sum_probs=84.9
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||||||+|.++..++++ .++++|+ + .+++.+++ ..++.+...|+.. +++ +||+|+++. ++|+
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~v~~~~-vlh~ 263 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P-----QVVGNLTG-NENLNFVGGDMFK-SIP--SADAVLLKW-VLHD 263 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H-----HHHSSCCC-CSSEEEEECCTTT-CCC--CCSEEEEES-CGGG
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H-----HHHhhccc-CCCcEEEeCccCC-CCC--CceEEEEcc-cccC
Confidence 48999999999999999874 3455565 3 33333333 2347888888766 666 499999998 5777
Q ss_pred cccHH--HHHHHHHhhcCC---CeEEEEEcCCCCCCCh-----hhHH---------------HHHHHHHHHHhcCeEEEe
Q 013393 122 LQRDG--ILLLELDRLLRP---GGYFVYSSPEAYAHDP-----ENRR---------------IWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 122 ~~d~~--~~L~ei~rvLkP---GG~lvis~p~~~~~~~-----~~~~---------------~~~~l~~l~~~~gf~~v~ 176 (444)
.++.. .+|+++.++||| ||++++.+........ .... ...++.+++++.||+.+.
T Consensus 264 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 343 (358)
T 1zg3_A 264 WNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYK 343 (358)
T ss_dssp SCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeE
Confidence 67776 999999999999 9999997643211110 1000 123677888889987765
Q ss_pred ee
Q 013393 177 KK 178 (444)
Q Consensus 177 ~~ 178 (444)
..
T Consensus 344 ~~ 345 (358)
T 1zg3_A 344 IT 345 (358)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-09 Score=106.80 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=72.9
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEecc--cc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR--CR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~--~~ 118 (444)
++|||||||+|.++...+++ .|+++|.++ ++ ..+.+.++.++. .+.+...+.+++.+| ++||+|+|-. ..
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~ 161 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG 161 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred CEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence 38999999999999888874 589999886 34 334455666654 477888888888876 6799999832 12
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+.+-.....++....|.|||||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 44434667889999999999999884
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.4e-09 Score=104.32 Aligned_cols=118 Identities=18% Similarity=0.160 Sum_probs=84.7
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
.+|||+|||+|.++..++.. .++|+|+++.++..+..+ +...+. ++.+...|+..+++++++||+|+|+.-..
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n-~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg 297 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN-ALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH-HHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC
T ss_pred CEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCC
Confidence 37999999999999998873 688998888777655533 334454 68899999999988888999999964211
Q ss_pred c------cccc-HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 120 D------WLQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 120 ~------~~~d-~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. ...+ ...++.++.++| ||.+++..+. ...+.+.+++.||+....
T Consensus 298 ~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~-----------~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 298 LKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE-----------KKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp ------CCHHHHHHHHHHHHHHHE--EEEEEEEESC-----------HHHHHHHHHHTTEEEEEE
T ss_pred cccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC-----------HHHHHHHHHHcCCEEEEE
Confidence 1 1111 257889999999 5555554332 235667888899987654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=9.5e-10 Score=108.83 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=67.4
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCcc-CCCCCCCcc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFE 110 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~-lp~~~~sFD 110 (444)
+++|||||||+|..+..+++. .++++|+++ .+++.|+++ ..++.+...|... ++..+++||
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD 183 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDE-----MVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD 183 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCH-----HHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCH-----HHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCce
Confidence 358999999999999999874 456665555 455555543 2356777777654 333467899
Q ss_pred EEEeccccccccccH----HHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 111 LAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 111 lI~~~~~~l~~~~d~----~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+|++.. ..++.+.. ..+++++.++|+|||.+++.....+
T Consensus 184 ~Ii~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~ 226 (314)
T 2b2c_A 184 VIITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 226 (314)
T ss_dssp EEEECC-C-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEEcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcc
Confidence 999865 23322221 5889999999999999999875544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=104.00 Aligned_cols=121 Identities=11% Similarity=0.086 Sum_probs=80.3
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cCCCcEEEEecCcc-CCCCCCCccEEEec
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHCS 115 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~-lp~~~~sFDlI~~~ 115 (444)
+++|||||||+|.++..+++. .++++|+++..+..++..+... ...++.+...|... ++..+++||+|++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 458999999999999999875 4677777765554444332221 12467888888655 34446789999986
Q ss_pred ccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 013393 116 RCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 170 (444)
Q Consensus 116 ~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~ 170 (444)
.. .++.+. ...+++++.++|||||.+++...+++.. ......+.+.+++.
T Consensus 156 ~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~~l~~~ 209 (275)
T 1iy9_A 156 ST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT----PELITNVQRDVKEI 209 (275)
T ss_dssp CS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC----HHHHHHHHHHHHTT
T ss_pred CC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccc----HHHHHHHHHHHHHh
Confidence 52 332111 2579999999999999999986554321 22344555555554
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7e-10 Score=107.34 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=69.2
Q ss_pred CCCeEEEECCCc--chHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC----CC--CCCcc
Q 013393 44 NIRNVLDVGCGV--ASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YP--SRSFE 110 (444)
Q Consensus 44 ~~~rVLDVGCGt--G~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp----~~--~~sFD 110 (444)
..++|||||||+ +.....+++ ..|+++|.++.++..++.........++.+...|+.+++ .+ .++||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 456899999997 333333332 468888887766644432222111124788888877642 11 34565
Q ss_pred -----EEEeccccccccccH---HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 111 -----LAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 111 -----lI~~~~~~l~~~~d~---~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.|+++. ++||+++. ..+++++.+.|+|||+|+++...
T Consensus 158 ~~~p~av~~~a-vLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 158 LTRPVALTVIA-IVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp TTSCCEEEEES-CGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred cCCcchHHhhh-hHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 466655 79998874 58999999999999999998644
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=101.86 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=70.1
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccC-CCC--CCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYP--SRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l-p~~--~~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+.... ...+. ++.+...|.... +.. +++||+|++..
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHV-KALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHH-HHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 38999999999999988863 5777777665554443222 22243 477777776653 332 57899999865
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
. ..+...+++++.++|||||++++.+.
T Consensus 135 ~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 135 A----KGQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp G----GSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred C----HHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 3 24678999999999999999999753
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-09 Score=103.39 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=71.0
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCccC-CCCCCCcc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRSFE 110 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~l-p~~~~sFD 110 (444)
+++|||||||+|.++..+++. .++++|+++ .+++.|+++ ..++.+...|.... +..+++||
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDE-----TVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 153 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCH-----HHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce
Confidence 358999999999999999874 456666555 444555543 24567888886542 22357899
Q ss_pred EEEecccccccccc--H--HHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 111 LAHCSRCRIDWLQR--D--GILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 111 lI~~~~~~l~~~~d--~--~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+|++.. ..++.+. . ..+++++.++|||||.+++...+.+
T Consensus 154 ~Ii~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~ 196 (283)
T 2i7c_A 154 VIIVDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLW 196 (283)
T ss_dssp EEEEEC-CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEEcC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcc
Confidence 999854 2333222 1 5899999999999999999876544
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-09 Score=107.04 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=70.1
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCcc-CCCCCCCcc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFE 110 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~-lp~~~~sFD 110 (444)
+++|||||||+|.++..+++. .++++|+++. +++.|+++ ..++.+...|... ++..+++||
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~-----~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 191 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET-----VIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 191 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHH-----HHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHH-----HHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCce
Confidence 358999999999999999875 4666666554 44554443 2357788887654 333357899
Q ss_pred EEEecccccccc--ccH--HHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 111 LAHCSRCRIDWL--QRD--GILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 111 lI~~~~~~l~~~--~d~--~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+|++... .++. ... ..+++++.++|||||++++...+.+
T Consensus 192 vIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 234 (321)
T 2pt6_A 192 VIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLW 234 (321)
T ss_dssp EEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred EEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcc
Confidence 9998642 2221 111 6899999999999999999765543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=104.10 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHH-----------cCCCcEEEEecCcc-CCCCCCCc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE-----------RGIPSTLGVLGTKR-LPYPSRSF 109 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e-----------~~~~~~~~~~d~~~-lp~~~~sF 109 (444)
+++|||||||+|.++..+++. .++++|+++..+..+...+ .. ...++.+...|... ++. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 358999999999999999875 4677777665544433222 10 12456777777544 222 5789
Q ss_pred cEEEeccccccccc--c--HHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 110 ELAHCSRCRIDWLQ--R--DGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 110 DlI~~~~~~l~~~~--d--~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
|+|++... .++.. . ...+++++.++|+|||.+++....+
T Consensus 154 D~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~ 196 (281)
T 1mjf_A 154 DVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 196 (281)
T ss_dssp EEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred eEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 99998652 22211 1 2578999999999999999975443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.5e-09 Score=97.18 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=69.2
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC--------------
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-------------- 103 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-------------- 103 (444)
.+|||+|||+|.++..+++. .++++|+++..+..++... ...+. .+.+...|... ++
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW-KENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 38999999999999988763 5778877776554444322 22233 26777777543 22
Q ss_pred CCC--CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 104 YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 104 ~~~--~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
|++ ++||+|++... ..+...+++++.++|||||++++...
T Consensus 141 f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 333 78999998752 34567899999999999999999753
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=104.65 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=85.2
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEec----
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCS---- 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~---- 115 (444)
.+|||+|||+|..+..+++ ..++++|+++..+..+.. .+...+.++.+...|...++ +++++||+|++.
T Consensus 248 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~-~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 326 (429)
T 1sqg_A 248 EHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYD-NLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCS 326 (429)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHH-HHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCC
T ss_pred CeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-HHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCC
Confidence 3899999999999999886 368999999877655543 34444667788888887765 556789999962
Q ss_pred c-ccccccccH----------------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CeEEE
Q 013393 116 R-CRIDWLQRD----------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 175 (444)
Q Consensus 116 ~-~~l~~~~d~----------------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~-gf~~v 175 (444)
. ..++..++. ..++.++.++|||||++++++...... +. -..+..++++. +|+.+
T Consensus 327 g~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~--en---e~~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 327 ATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE--EN---SLQIKAFLQRTADAELC 399 (429)
T ss_dssp CGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHCTTCEEC
T ss_pred cccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh--hH---HHHHHHHHHhCCCCEEe
Confidence 2 122222221 478999999999999999987654321 11 12444555443 56554
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.1e-09 Score=99.21 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=70.5
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc----CCCCC--CCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR----LPYPS--RSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~----lp~~~--~sFDlI 112 (444)
++|||+|||+|..+..+++. .++++|+++..+..+...+. +.+. ++.+...|... ++..+ ++||+|
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 48999999999999999874 57788777765544443322 2233 46777777433 33333 789999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++... ..+...++.++.++|||||++++....
T Consensus 153 ~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 153 FIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EECSC----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 97652 356778999999999999999996543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-09 Score=99.49 Aligned_cols=99 Identities=11% Similarity=0.163 Sum_probs=63.0
Q ss_pred CCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccC---CCC---CCCccEE
Q 013393 45 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL---PYP---SRSFELA 112 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l---p~~---~~sFDlI 112 (444)
..+|||+|||+|.++..+++ ..++++|+++.++..+..+. ...+. ++.+...|.... +++ +++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV-EQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 34899999999999888875 36888988887766555433 33343 378888886552 344 2689999
Q ss_pred Eecccccccc--------------ccHHHHHHHHHhhcCCCeEEEE
Q 013393 113 HCSRCRIDWL--------------QRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 113 ~~~~~~l~~~--------------~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+|+....+.. .....++.++.++|||||.+.+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 9984222111 0112456788888888887765
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=98.94 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=99.1
Q ss_pred eeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHH
Q 013393 7 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 83 (444)
Q Consensus 7 ~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~ 83 (444)
.|.|.-.-+.|..+...-...+.+.+. +|. +|||+|||+|.++..++++ .|+++|++|..+..+..
T Consensus 98 ~~~~D~~k~~f~~~~~~er~ri~~~~~-------~g~---~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~- 166 (278)
T 3k6r_A 98 KYKLDVAKIMFSPANVKERVRMAKVAK-------PDE---LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE- 166 (278)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHCC-------TTC---EEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHH-
T ss_pred EEEEeccceEEcCCcHHHHHHHHHhcC-------CCC---EEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHH-
Confidence 444433456677777665556665553 333 8999999999999988763 58888888866644443
Q ss_pred HHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHH
Q 013393 84 FALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWN 161 (444)
Q Consensus 84 ~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~ 161 (444)
.++.++. .+.+...|...++. .+.||.|+++. . .....++..+.++|||||++.+.....-. ........
T Consensus 167 N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~--p---~~~~~~l~~a~~~lk~gG~ih~~~~~~e~--~~~~~~~e 238 (278)
T 3k6r_A 167 NIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY--V---VRTHEFIPKALSIAKDGAIIHYHNTVPEK--LMPREPFE 238 (278)
T ss_dssp HHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC--C---SSGGGGHHHHHHHEEEEEEEEEEEEEEGG--GTTTTTHH
T ss_pred HHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECC--C---CcHHHHHHHHHHHcCCCCEEEEEeeeccc--ccchhHHH
Confidence 3444444 36677788777653 57899999764 2 22346788889999999998764321100 00112345
Q ss_pred HHHHHHHhcCeEEEee
Q 013393 162 AMYDLLKSMCWKIVSK 177 (444)
Q Consensus 162 ~l~~l~~~~gf~~v~~ 177 (444)
.+.++++..|+++...
T Consensus 239 ~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 239 TFKRITKEYGYDVEKL 254 (278)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCcEEEE
Confidence 6778888999976544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-09 Score=101.44 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CCC------CCCCcc
Q 013393 45 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPY------PSRSFE 110 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp~------~~~sFD 110 (444)
+++|||||||+|..+..+++ ..++++|+++..+..+...+ .+.+. ++.+...|..+ ++. ++++||
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI-KKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 34899999999999998876 35888888887665554333 33343 46777777654 231 157899
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+|++... ..+...+++++.++|||||++++..
T Consensus 159 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9998652 3567789999999999999999864
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-09 Score=106.47 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=69.2
Q ss_pred CeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccC--CCCCCCccEEEe
Q 013393 46 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRL--PYPSRSFELAHC 114 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~l--p~~~~sFDlI~~ 114 (444)
.+|||||||+|.++.++++. .++++|+ ++.+++.|++. ..++.+...|...+ .+++++||+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEi-----dp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVEL-----DAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEES-----CHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEEC-----CHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 38999999999999999872 3455554 45566666655 24578888886553 345688999998
Q ss_pred ccccccc-cc---cHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 115 SRCRIDW-LQ---RDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 115 ~~~~l~~-~~---d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
... .+. .+ ....+++++.++|||||+|++...
T Consensus 166 D~~-~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 166 DVF-AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CCS-TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 642 221 11 126899999999999999998764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-08 Score=101.75 Aligned_cols=123 Identities=15% Similarity=0.017 Sum_probs=81.5
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-CCCCCCccEEEecccccc--
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRID-- 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p~~~~sFDlI~~~~~~l~-- 120 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+..+ ++.++....+...|...+ +...+.||+|++..-.+.
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n-~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~ 294 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQA-ALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKR 294 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCSS
T ss_pred CeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 38999999999999999874 478888888776555543 334466666777776553 222344999998642111
Q ss_pred ------ccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCe
Q 013393 121 ------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 172 (444)
Q Consensus 121 ------~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf 172 (444)
...+...++.++.++|||||++++++...... .......+.+.+.+.|.
T Consensus 295 ~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~---~~~f~~~v~~a~~~~g~ 349 (393)
T 4dmg_A 295 PEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLR---LEDLLEVARRAAADLGR 349 (393)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC---HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC---HHHHHHHHHHHHHHhCC
Confidence 12345689999999999999999766554322 11222345566666664
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.3e-08 Score=88.64 Aligned_cols=118 Identities=9% Similarity=0.027 Sum_probs=79.5
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||+|||+|.++..+++. .++++|+++..+..+..+ +...+.++.+...|...++ ++||+|+++.. .+..
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p-~~~~ 125 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIEN-LGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP-FGSQ 125 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-TGGGTTSEEEEESCGGGCC---CCCSEEEECCC-CSSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCEEEEECchHHcC---CCCCEEEEcCC-Cccc
Confidence 48999999999999999875 377787776554333322 2222447888888887764 48999999863 3332
Q ss_pred --ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 123 --QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 123 --~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.....+++++.++| ||.+++..+. ......+.+.+++.||++....
T Consensus 126 ~~~~~~~~l~~~~~~l--~~~~~~~~~~--------~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS--DVVYSIHLAK--------PEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp STTTTHHHHHHHHHHC--SEEEEEEECC--------HHHHHHHHHHHHHTTEEEEEEE
T ss_pred cCCchHHHHHHHHHhc--CcEEEEEeCC--------cCCHHHHHHHHHHCCCeEEEEE
Confidence 23357899999998 6655543211 1234556778888999765443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-08 Score=91.44 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=73.6
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++..++.+...|...++ ++||+|+++.. +++.
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p-~~~~ 123 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP-FGSV 123 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC-C---
T ss_pred CEEEEEeCCccHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCC-chhc
Confidence 48999999999999999875 366776654 455666655447888899988765 68999999874 5554
Q ss_pred cc--HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 123 QR--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 123 ~d--~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
.+ ...+++++.++| |+.+++..+ .....+.+.+++.| +..
T Consensus 124 ~~~~~~~~l~~~~~~~--g~~~~~~~~----------~~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 124 VKHSDRAFIDKAFETS--MWIYSIGNA----------KARDFLRREFSARG-DVF 165 (200)
T ss_dssp ----CHHHHHHHHHHE--EEEEEEEEG----------GGHHHHHHHHHHHE-EEE
T ss_pred cCchhHHHHHHHHHhc--CcEEEEEcC----------chHHHHHHHHHHCC-CEE
Confidence 43 247899999999 554444322 12445677777777 443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=97.48 Aligned_cols=128 Identities=10% Similarity=0.049 Sum_probs=87.1
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
+.+|||||||+|-++..++.. .++++|+++.++.-... ++...+.+..+.+.|...-+ +.++||+|+++- ++|
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~-~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lk-ti~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDE-ALTRLNVPHRTNVADLLEDR-LDEPADVTLLLK-TLP 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHH-HHHHTTCCEEEEECCTTTSC-CCSCCSEEEETT-CHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeeecccC-CCCCcchHHHHH-HHH
Confidence 558999999999999888653 68888888766644442 33444788888888865554 457899999888 688
Q ss_pred ccccHH--HHHHHHHhhcCCCeEEEEEcC-CCCCCChhhHHHH-HHHHHHHHhcCeEEEe
Q 013393 121 WLQRDG--ILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIW-NAMYDLLKSMCWKIVS 176 (444)
Q Consensus 121 ~~~d~~--~~L~ei~rvLkPGG~lvis~p-~~~~~~~~~~~~~-~~l~~l~~~~gf~~v~ 176 (444)
++++.+ ..+ ++...|+|+|.++-... +...+.+.-...+ ..+++.+.+.||....
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceee
Confidence 876664 455 99999999999885332 1222333222333 3667888888885443
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.80 E-value=7.6e-09 Score=99.67 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=66.4
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCccCCCCCCCccEEEec
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
+++|||||||+|.++..+++.. ..+...|+++.+++.|++. ..++.+...|..... ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 4589999999999999988752 2333444455555555443 235677777766554 789999986
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
. .++..+++++.++|||||.+++....+
T Consensus 147 ~------~dp~~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 147 Q------EPDIHRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp S------CCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred C------CChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 3 344469999999999999999975443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.9e-09 Score=105.20 Aligned_cols=123 Identities=13% Similarity=0.079 Sum_probs=81.9
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCC----CCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY----PSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~----~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .|+++|+++..+..+..+. ..++. ++.+...|+..+.. .+++||+|++..-.
T Consensus 211 ~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~-~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENA-RLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHH-HHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHH-HHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 38999999999999999874 6778877776665554333 33343 47888888655421 25689999985311
Q ss_pred --------ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCe
Q 013393 119 --------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 172 (444)
Q Consensus 119 --------l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf 172 (444)
.....+...++.++.++|+|||++++++.+.... . ......+.+.+.+.|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~--~~~~~~i~~~~~~~g~ 348 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-E--PLFYAMVAEAAQDAHR 348 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-H--HHHHHHHHHHHHHTTC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-H--HHHHHHHHHHHHHcCC
Confidence 1122455689999999999999999987654322 1 1122344556666663
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-08 Score=94.50 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=70.9
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccC-C-CCC----CCccEE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-P-YPS----RSFELA 112 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~l-p-~~~----~sFDlI 112 (444)
++|||+|||+|.++..+++. .++++|+++..+..+...+ ...+ .++.+...|.... + +++ ++||+|
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW-RQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 48999999999999999863 5788888887665554333 3333 3577877775432 1 111 689999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
++... ..+...+++++.++|||||++++...
T Consensus 150 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 150 VVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 98652 35567899999999999999999653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=110.16 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=84.9
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCcc-CCCCCCCccEEEeccc-
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LPYPSRSFELAHCSRC- 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~-lp~~~~sFDlI~~~~~- 117 (444)
++|||+|||+|.++.+++.. .|+++|+++..+..+..+.. .++. ++.+...|... ++...++||+|++..-
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~-~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLR-LNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT 619 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred CcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence 38999999999999998864 48889888877766654443 3343 47888888655 4444678999998542
Q ss_pred ---------cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 118 ---------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 118 ---------~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
......+...++.++.++|+|||+|+++......... .+.+++.|++.
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~---------~~~l~~~g~~~ 676 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD---------LDGLAKLGLKA 676 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC---------HHHHHHTTEEE
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC---------HHHHHHcCCce
Confidence 1233456678999999999999999998766332221 34556677763
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-08 Score=101.92 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=84.5
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccCCC----CCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPY----PSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~lp~----~~~sFDlI~~~ 115 (444)
.+|||+|||+|.++..+++. .|+++|+++..+..+..+ +...+. ++.+...|...+.. ..++||+|++.
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n-~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 38999999999999999875 588888888766555533 334455 67888888655421 14689999986
Q ss_pred cc--------cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCe
Q 013393 116 RC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 172 (444)
Q Consensus 116 ~~--------~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf 172 (444)
.- ......+...++.++.+.|+|||+++++..+..... ......+.+.+.+.|+
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTS---DLFQKIIADAAIDAGR 362 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCH---HHHHHHHHHHHHHHTC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCH---HHHHHHHHHHHHHcCC
Confidence 31 112225567899999999999999999875543221 1223344556777774
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6e-09 Score=108.18 Aligned_cols=126 Identities=21% Similarity=0.191 Sum_probs=83.2
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC-CCCCCccEEEe----c
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHC----S 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp-~~~~sFDlI~~----~ 115 (444)
.+|||+|||+|..+..+++. .|+++|+++..+..+.. .+...+..+.+...|...++ +.+++||+|++ +
T Consensus 103 ~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~-n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 103 ERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE-NVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcC
Confidence 38999999999999998852 57888877766544443 33334555777777876665 34578999995 2
Q ss_pred c-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CeEEEee
Q 013393 116 R-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIVSK 177 (444)
Q Consensus 116 ~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~-gf~~v~~ 177 (444)
. .++...++ ...++.++.++|||||+|++++-..... +. -..+..++++. +|+++..
T Consensus 182 g~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e--En---e~vv~~~l~~~~~~~l~~~ 256 (464)
T 3m6w_A 182 GEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE--EN---EGVVAHFLKAHPEFRLEDA 256 (464)
T ss_dssp CGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHCTTEEEECC
T ss_pred CccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh--cC---HHHHHHHHHHCCCcEEEec
Confidence 1 11111111 1578999999999999999987554321 11 23455666665 5766543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-08 Score=97.80 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=77.9
Q ss_pred CCCCCCCCCeEEEECC------Ccch-HHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCCcEE-EEecCccCCCCCC
Q 013393 38 KLNNGGNIRNVLDVGC------GVAS-FGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLPYPSR 107 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGC------GtG~-~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~~~~-~~~d~~~lp~~~~ 107 (444)
.++++. +|||+|| |+|. .+..+.. ..|+|+|+++. + .++.+ ...|+..++++ +
T Consensus 60 ~l~~g~---~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~-~ 122 (290)
T 2xyq_A 60 AVPYNM---RVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA-N 122 (290)
T ss_dssp CCCTTC---EEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS-S
T ss_pred CCCCCC---EEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc-C
Confidence 344554 8999999 4465 1222222 46899999986 1 25677 88998888765 6
Q ss_pred CccEEEeccccccc-----------cccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 108 SFELAHCSRCRIDW-----------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 108 sFDlI~~~~~~l~~-----------~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
+||+|+|+.. .++ ......+++++.++|||||.|++....... ..++.+++++.||..+.
T Consensus 123 ~fD~Vvsn~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~--------~~~l~~~l~~~GF~~v~ 193 (290)
T 2xyq_A 123 KWDLIISDMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--------NADLYKLMGHFSWWTAF 193 (290)
T ss_dssp CEEEEEECCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--------CHHHHHHHTTEEEEEEE
T ss_pred cccEEEEcCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC--------HHHHHHHHHHcCCcEEE
Confidence 8999998642 221 112347999999999999999996544211 23677888888887654
Q ss_pred e
Q 013393 177 K 177 (444)
Q Consensus 177 ~ 177 (444)
.
T Consensus 194 ~ 194 (290)
T 2xyq_A 194 V 194 (290)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=105.38 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=72.8
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCC-CCCCccEEEec---
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCS--- 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~-~~~sFDlI~~~--- 115 (444)
.+|||+|||+|..+.++++ ..|+++|+++..+..+..+. +..+. ++.+...|...++. .+++||.|++.
T Consensus 119 ~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~-~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 119 QRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANI-SRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHH-HHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 3899999999999999886 25788887776655444333 22344 67788888777653 45789999972
Q ss_pred -c-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 -R-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 -~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
. ..+...++ ...+|.++.++|||||++++++-...
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 1 11211111 24689999999999999999876654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=102.68 Aligned_cols=124 Identities=14% Similarity=0.030 Sum_probs=84.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCC----CCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPY----PSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~----~~~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..+++. .|+++|+++..+..+..+ +...+. ++.+...|...+.. .+++||+|++..
T Consensus 219 ~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n-~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 219 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKEN-AKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 48999999999999999875 588898888776555543 333444 57888888655421 256899999853
Q ss_pred cc--------ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 117 CR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 117 ~~--------l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
-. .+...+...++.++.++|+|||++++++...... . ......+.+.+.+.+..
T Consensus 298 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-~--~~~~~~v~~~~~~~~~~ 359 (396)
T 2as0_A 298 PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-L--QMFKDMIIAAGAKAGKF 359 (396)
T ss_dssp CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-H--HHHHHHHHHHHHHTTEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC-H--HHHHHHHHHHHHHcCCe
Confidence 11 1122456689999999999999999887654322 1 11223445566666654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=99.24 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=68.4
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCc---cEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSF---ELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sF---DlI~~~~~~ 118 (444)
+|||+|||+|.++..+++. .|+++|+++..+..+..+ +...+. ++.+...|.... ++ ++| |+|+|+.-.
T Consensus 126 ~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n-~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPPy 202 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN-AERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNPPY 202 (284)
T ss_dssp EEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH-HHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECCCC
T ss_pred EEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcCCC
Confidence 8999999999999998864 678888877666555433 333344 378888887652 22 578 999997211
Q ss_pred cc----------ccc--------cHHHHHHHHH-hhcCCCeEEEEEcC
Q 013393 119 ID----------WLQ--------RDGILLLELD-RLLRPGGYFVYSSP 147 (444)
Q Consensus 119 l~----------~~~--------d~~~~L~ei~-rvLkPGG~lvis~p 147 (444)
+. |.+ +...+++++. +.|+|||++++...
T Consensus 203 i~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 203 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred CCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 10 211 1227899999 99999999998644
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.6e-08 Score=97.45 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=70.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
.+|||+|||+|.++.. ++. .|+++|+++..+..++.+ ++.++. ++.+...|...+. ++||+|++.. ..+
T Consensus 197 ~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n-~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dp--P~~ 269 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKN-IKLNKLEHKIIPILSDVREVD---VKGNRVIMNL--PKF 269 (336)
T ss_dssp CEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCGGGCC---CCEEEEEECC--TTT
T ss_pred CEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECChHHhc---CCCcEEEECC--cHh
Confidence 3899999999999999 763 578888888766555533 333443 5788888877765 7899999863 111
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
...++.++.++|+|||++++.+..
T Consensus 270 ---~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 ---AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ---GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEEee
Confidence 237899999999999999986544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=105.07 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=83.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC-CCCCCccEEEecc-c
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSR-C 117 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp-~~~~sFDlI~~~~-~ 117 (444)
.+|||+|||+|..+.++++. .|+++|+++..+..+..+.. ..+. ++.+...|...++ +.+++||+|++.- |
T Consensus 107 ~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~-r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPC 185 (456)
T 3m4x_A 107 EKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIE-RWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPC 185 (456)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHH-HHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCC
T ss_pred CEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhhhccccCCEEEECCCC
Confidence 38999999999999888762 57888887766554443333 3343 5677777766654 2357899999732 1
Q ss_pred ----ccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 118 ----RIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 ----~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
++...++ ...+|.++.++|||||++++++-..... + .-..+..++++.+|+++..
T Consensus 186 Sg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e--E---ne~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 186 SGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE--E---NEEIISWLVENYPVTIEEI 260 (456)
T ss_dssp CCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG--G---THHHHHHHHHHSSEEEECC
T ss_pred CCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc--c---CHHHHHHHHHhCCCEEEec
Confidence 1111111 1278999999999999999987554321 1 1235677788888776654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-08 Score=96.51 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=69.7
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccC-C-C-----CCCCccE
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-Y-----PSRSFEL 111 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~l-p-~-----~~~sFDl 111 (444)
++|||||||+|..+..+++ ..++++|+++..+..+...+ .+.+. ++.+...|..+. + + ++++||+
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFI-RKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 4899999999999998875 35788888776554444332 23344 467777775442 2 1 2578999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|++.. ...+...+++++.++|||||++++..
T Consensus 151 I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 151 GFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99764 23567789999999999999999864
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=94.83 Aligned_cols=131 Identities=16% Similarity=0.076 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHhh-CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~-~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+.+|||||||+|.++..+.. ..++++|+++.++.-+.. .+...+.+..+.+.|....+.+ ++||+|++.- ++|++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~-~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk-~lh~L 181 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITP-FAREKDWDFTFALQDVLCAPPA-EAGDLALIFK-LLPLL 181 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHH-HHHHTTCEEEEEECCTTTSCCC-CBCSEEEEES-CHHHH
T ss_pred CCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeecccCCCC-CCcchHHHHH-HHHHh
Confidence 355999999999999988763 478888888776644443 3444478888999998777765 5899999887 57776
Q ss_pred ccHH-HHHHHHHhhcCCCeEEEEEcC-CCCCCChhhHHHH-HHHHHHHHhcCeEEEee
Q 013393 123 QRDG-ILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIW-NAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 123 ~d~~-~~L~ei~rvLkPGG~lvis~p-~~~~~~~~~~~~~-~~l~~l~~~~gf~~v~~ 177 (444)
++.+ ....++.+.|+++|.++-... ....+.+.-...+ ..+++.+.+..|.+...
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~ 239 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKK 239 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhhe
Confidence 5543 233388889999987764221 2222222222222 24556666666644433
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=97.51 Aligned_cols=120 Identities=13% Similarity=0.180 Sum_probs=81.2
Q ss_pred CeEEEECCCcchHHHHHhh---------CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLS---------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~---------~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..+++ ..++|+|+++..+..+..+.. ..+.++.+...|.... .+.++||+|+++.
T Consensus 132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~~i~~~D~l~~-~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 132 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLAN-LLVDPVDVVISDL 209 (344)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTSC-CCCCCEEEEEEEC
T ss_pred CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCceEEECCCCCc-cccCCccEEEECC
Confidence 4899999999999887764 246777777665544443332 2356778888886543 3457899999986
Q ss_pred ccccccccH------------------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCe
Q 013393 117 CRIDWLQRD------------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 172 (444)
Q Consensus 117 ~~l~~~~d~------------------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf 172 (444)
- +.+.+.. ..++.++.+.|||||++++..|........ ...+.+.+.+.++
T Consensus 210 P-fg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~----~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 210 P-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNGH 278 (344)
T ss_dssp C-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHEE
T ss_pred C-CCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCch----HHHHHHHHHhCCe
Confidence 3 3332211 258999999999999999988765322222 3566666666666
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-07 Score=94.20 Aligned_cols=117 Identities=17% Similarity=0.190 Sum_probs=78.3
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCcc----CCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~----lp~~~~sFDlI~~~~~~ 118 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+..+ +...+. ++.+...|... +++++++||+|++..-
T Consensus 288 ~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n-~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPP- 365 (433)
T 1uwv_A 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQN-ARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA- 365 (433)
T ss_dssp CEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC-
T ss_pred CEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCC-
Confidence 38999999999999999975 688888888776555533 333443 68888888766 3455678999998642
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
... ...+++.+. .++|++.++++..+ .....-...+.+.||++...
T Consensus 366 --r~g-~~~~~~~l~-~~~p~~ivyvsc~p---------~tlard~~~l~~~Gy~~~~~ 411 (433)
T 1uwv_A 366 --RAG-AAGVMQQII-KLEPIRIVYVSCNP---------ATLARDSEALLKAGYTIARL 411 (433)
T ss_dssp --TTC-CHHHHHHHH-HHCCSEEEEEESCH---------HHHHHHHHHHHHTTCEEEEE
T ss_pred --Ccc-HHHHHHHHH-hcCCCeEEEEECCh---------HHHHhhHHHHHHCCcEEEEE
Confidence 211 124555554 47999999987433 11222234445568987654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.1e-08 Score=94.32 Aligned_cols=109 Identities=19% Similarity=0.173 Sum_probs=69.2
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEec
Q 013393 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLG 98 (444)
Q Consensus 23 ~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d 98 (444)
...+.+.+.+.. .+ ..+|||||||+|.++..+++. .|+++|+++.++..+..+. ...+ .++.+...|
T Consensus 15 ~i~~~i~~~~~~-----~~---~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D 85 (285)
T 1zq9_A 15 LIINSIIDKAAL-----RP---TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGD 85 (285)
T ss_dssp HHHHHHHHHTCC-----CT---TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESC
T ss_pred HHHHHHHHhcCC-----CC---CCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcc
Confidence 344555555543 22 338999999999999999874 5778877765553333222 1112 357888889
Q ss_pred CccCCCCCCCccEEEeccccccccccHH-HHH--------------HHH--HhhcCCCeEEE
Q 013393 99 TKRLPYPSRSFELAHCSRCRIDWLQRDG-ILL--------------LEL--DRLLRPGGYFV 143 (444)
Q Consensus 99 ~~~lp~~~~sFDlI~~~~~~l~~~~d~~-~~L--------------~ei--~rvLkPGG~lv 143 (444)
+..++++ +||+|+++. ..++..+.- .++ +|+ .++|+|||.++
T Consensus 86 ~~~~~~~--~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 86 VLKTDLP--FFDTCVANL-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp TTTSCCC--CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred eecccch--hhcEEEEec-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 8887765 799999975 344432221 222 233 36899999874
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=94.94 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=80.0
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|.++..+++ ..++|+|+++..+..+ .++.+...|....+. .++||+|+++--...
T Consensus 41 ~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~ 110 (421)
T 2ih2_A 41 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEP-GEAFDLILGNPPYGI 110 (421)
T ss_dssp CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCC-SSCEEEEEECCCCCC
T ss_pred CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCc-cCCCCEEEECcCccC
Confidence 3899999999999999886 3688999988766433 457788888776653 468999999621111
Q ss_pred c---------c-cc------------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCe
Q 013393 121 W---------L-QR------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 172 (444)
Q Consensus 121 ~---------~-~d------------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf 172 (444)
. . ++ ...++..+.++|+|||++++..|..+.... ....+.+.+.+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~----~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 111 VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE----DFALLREFLAREGK 186 (421)
T ss_dssp BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG----GGHHHHHHHHHHSE
T ss_pred cccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCc----cHHHHHHHHHhcCC
Confidence 0 0 11 125789999999999999998877533222 23467777777777
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=92.38 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=47.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..++++ .|+++|+++.++..+..+.......++.+...|+..++++ +||+|+|+.
T Consensus 44 ~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~ 114 (299)
T 2h1r_A 44 DIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANI 114 (299)
T ss_dssp CEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEEC
T ss_pred CEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcC
Confidence 38999999999999999885 5778877776654444333221124678888888877754 799999875
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-07 Score=92.96 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=68.1
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
.+|||+|||+|.++..+++. .|+|+|+++.++..+..+ +...+.++.+...|+.++.. .+||+|++..- ...
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n-~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPP---r~g 365 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRN-VEINNVDAEFEVASDREVSV--KGFDTVIVDPP---RAG 365 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCEEEEECCTTTCCC--TTCSEEEECCC---TTC
T ss_pred CEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChHHcCc--cCCCEEEEcCC---ccc
Confidence 38999999999999999885 688888888777665543 33345558888888877643 28999998642 111
Q ss_pred cHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 124 RDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 124 d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
-...+++.+. .|+|||.++++..
T Consensus 366 ~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 366 LHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp SCHHHHHHHH-HHCCSEEEEEESC
T ss_pred hHHHHHHHHH-hcCCCcEEEEECC
Confidence 1234555554 5999999999753
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=84.39 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=63.7
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc--
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID-- 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~-- 120 (444)
+|||+|||+|.|+.++++. .+.++++. .|+....+.. ...+.++.....+++...+++++||+|+|..+ .+
T Consensus 77 ~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG-vDl~~~pi~~-~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~a-pnsG 153 (277)
T 3evf_A 77 RVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG-RDGHEKPMNV-QSLGWNIITFKDKTDIHRLEPVKCDTLLCDIG-ESSS 153 (277)
T ss_dssp EEEEETCTTCHHHHHHHTSTTEEEEEEECCC-CTTCCCCCCC-CBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CCCS
T ss_pred EEEEecCCCCHHHHHHHHhcCCCcceeEEEe-ccCccccccc-CcCCCCeEEEeccceehhcCCCCccEEEecCc-cCcC
Confidence 8999999999999988764 35566665 2321110000 00122444445555555677789999999762 33
Q ss_pred --ccccHH--HHHHHHHhhcCCC-eEEEEEcCCC
Q 013393 121 --WLQRDG--ILLLELDRLLRPG-GYFVYSSPEA 149 (444)
Q Consensus 121 --~~~d~~--~~L~ei~rvLkPG-G~lvis~p~~ 149 (444)
+.+... .+|..+.++|+|| |.|++..-.+
T Consensus 154 ~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 154 SSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred chHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 332222 3578889999999 9999965543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-09 Score=101.84 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=65.6
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCC-CCccEEEecccc----
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-RSFELAHCSRCR---- 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~-~sFDlI~~~~~~---- 118 (444)
.+|||+|||+|.++..+++. .++|+|+++.++..+..+.. ...++.+...|...+++++ ++| .|+++.-.
T Consensus 31 ~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~ 107 (245)
T 1yub_A 31 DTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLST 107 (245)
T ss_dssp EEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSCH
T ss_pred CEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeCCccccH
Confidence 38999999999999999874 67888888776543322111 1235778888888888774 689 67765310
Q ss_pred ------ccccccHHHHH----HHHHhhcCCCeEEEEEcC
Q 013393 119 ------IDWLQRDGILL----LELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 119 ------l~~~~d~~~~L----~ei~rvLkPGG~lvis~p 147 (444)
+.+..+...++ +.+.|+|+|||.+.+..+
T Consensus 108 ~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 108 QIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp HHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred HHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 00111222334 668999999998887543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.8e-07 Score=91.32 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=68.2
Q ss_pred CCeEEEECCCcchHHHHHhh-------------------CCceEEEcCcccchHHHHHHHHH----------c--CCCcE
Q 013393 45 IRNVLDVGCGVASFGAYLLS-------------------HDIIAMSLAPNDVHENQIQFALE----------R--GIPST 93 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-------------------~~V~gvdis~~dis~a~i~~a~e----------~--~~~~~ 93 (444)
.-+|+|+|||+|..+..+++ -.|...|+...|...-....+.. . +.+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 35899999999988777632 13556677777754433222210 0 00112
Q ss_pred EE--Eec-CccCCCCCCCccEEEeccccccccc--------------------------------------cHHHHHHHH
Q 013393 94 LG--VLG-TKRLPYPSRSFELAHCSRCRIDWLQ--------------------------------------RDGILLLEL 132 (444)
Q Consensus 94 ~~--~~d-~~~lp~~~~sFDlI~~~~~~l~~~~--------------------------------------d~~~~L~ei 132 (444)
|. +.. ...-.||+++||+|+|+. .+||+. |...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~-aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAF-SLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEES-CTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecc-eeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222 333458899999999999 599975 455678999
Q ss_pred HhhcCCCeEEEEEcC
Q 013393 133 DRLLRPGGYFVYSSP 147 (444)
Q Consensus 133 ~rvLkPGG~lvis~p 147 (444)
++.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999754
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.5e-07 Score=93.04 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=71.4
Q ss_pred CeEEEECCCcchHHHHHhh-----------------CCceEEEcCcccchHHHHHHHHHcCC---CcEEEEecCccCCCC
Q 013393 46 RNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPYP 105 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----------------~~V~gvdis~~dis~a~i~~a~e~~~---~~~~~~~d~~~lp~~ 105 (444)
.+|||.|||+|.+...+++ ..++|+|+++..+..+..+... .+. +..+...|+...+..
T Consensus 173 ~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l-~g~~~~~~~i~~gD~l~~~~~ 251 (445)
T 2okc_A 173 ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGIGTDRSPIVCEDSLEKEPS 251 (445)
T ss_dssp CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTCCSSCCSEEECCTTTSCCS
T ss_pred CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH-hCCCcCCCCEeeCCCCCCccc
Confidence 3799999999998877653 4688998888666555543332 344 567788887666543
Q ss_pred CCCccEEEeccccccc--cc--------------cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 106 SRSFELAHCSRCRIDW--LQ--------------RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~--~~--------------d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++||+|+++.-.... .. ....++..+.+.|||||++++..|.
T Consensus 252 -~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 252 -TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp -SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred -CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 489999997421111 10 0137899999999999999988765
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.9e-07 Score=86.65 Aligned_cols=92 Identities=9% Similarity=0.037 Sum_probs=65.9
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
|.+|-.. ....+.+.+.+.. .++ .+|||||||+|.++..|++ ..|+++|+++.++..+..+.. ...+
T Consensus 29 GQnfL~d-~~i~~~Iv~~l~~-----~~~---~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~ 97 (295)
T 3gru_A 29 GQCFLID-KNFVNKAVESANL-----TKD---DVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNN 97 (295)
T ss_dssp -CCEECC-HHHHHHHHHHTTC-----CTT---CEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSS
T ss_pred CccccCC-HHHHHHHHHhcCC-----CCc---CEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCC
Confidence 4444433 2344555555543 233 3899999999999999987 368999999987766554433 3457
Q ss_pred cEEEEecCccCCCCCCCccEEEecc
Q 013393 92 STLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
+.+...|+..+++++.+||.|+++.
T Consensus 98 v~vi~gD~l~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 98 IEIIWGDALKVDLNKLDFNKVVANL 122 (295)
T ss_dssp EEEEESCTTTSCGGGSCCSEEEEEC
T ss_pred eEEEECchhhCCcccCCccEEEEeC
Confidence 8899999999888877899999875
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.8e-06 Score=82.70 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=67.1
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCC---CCccEEEec--
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPS---RSFELAHCS-- 115 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~---~sFDlI~~~-- 115 (444)
+|||+|||+|..+.++++ ..|+++|+++..+.....+ ++..+. ++.+...|...++... ++||.|++.
T Consensus 105 ~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~P 183 (309)
T 2b9e_A 105 HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATL-LARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPS 183 (309)
T ss_dssp EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred EEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCC
Confidence 899999999999998876 3588898887666554433 333343 6788888877765432 579999972
Q ss_pred --c-ccccccc-----------cH-------HHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 116 --R-CRIDWLQ-----------RD-------GILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 116 --~-~~l~~~~-----------d~-------~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
. ..+...+ +. ..+|..+.++|+ ||++++++-..
T Consensus 184 cSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 184 CSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp CCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 1 1111111 11 246778888887 99999876554
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=83.02 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=46.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCC-CCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPS-RSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~-~sFDlI~~~~ 116 (444)
.+|||+|||+|.++..++++ .++++|+++ .+++.++++ ..++.+...|+..+++++ ..| .|+++.
T Consensus 32 ~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~nl 102 (244)
T 1qam_A 32 DNIFEIGSGKGHFTLELVQRCNFVTAIEIDH-----KLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGNI 102 (244)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEECSCH-----HHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEEC
T ss_pred CEEEEEeCCchHHHHHHHHcCCeEEEEECCH-----HHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEeC
Confidence 48999999999999999874 566666655 444555444 246788899998888874 455 455553
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.3e-06 Score=82.91 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=70.0
Q ss_pred CeEEEECCCcchHHHHHhh--C----------------------------------------CceEEEcCcccchHHHHH
Q 013393 46 RNVLDVGCGVASFGAYLLS--H----------------------------------------DIIAMSLAPNDVHENQIQ 83 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~----------------------------------------~V~gvdis~~dis~a~i~ 83 (444)
.+|||.+||+|.++..++. . .|+|+|+++.++..+..+
T Consensus 203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~N 282 (393)
T 3k0b_A 203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQN 282 (393)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHH
Confidence 3799999999998877654 1 288888888777665543
Q ss_pred HHHHcCC--CcEEEEecCccCCCCCCCccEEEecccccccc---ccHHHHHHHHHhhcCC--CeEEEEEcCC
Q 013393 84 FALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPE 148 (444)
Q Consensus 84 ~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~---~d~~~~L~ei~rvLkP--GG~lvis~p~ 148 (444)
+...+. .+.+...|+.+++.+ .+||+|+|+.-..... .+...+.+++.+.||+ ||.+++.++.
T Consensus 283 -a~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 283 -AVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp -HHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred -HHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 333444 478999999888765 5899999984211111 2334567777777766 8888876554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-06 Score=91.44 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHH---HHhhC-----CceEEEcCcccchHHHHHHHHHc--CC
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA---YLLSH-----DIIAMSLAPNDVHENQIQFALER--GI 90 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~---~La~~-----~V~gvdis~~dis~a~i~~a~e~--~~ 90 (444)
++.|.+.+.+.+.-....-.+..+...|||||||+|.+.. ..+++ +|++++-++...... +..+++ +.
T Consensus 334 y~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~--~~v~~N~~~d 411 (637)
T 4gqb_A 334 YSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTL--ENWQFEEWGS 411 (637)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHH--HHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH--HHHHhccCCC
Confidence 4566666665553211122223344579999999997743 33332 578888887543322 233333 44
Q ss_pred CcEEEEecCccCCCCCCCccEEEecccccccc--ccHHHHHHHHHhhcCCCeEEE
Q 013393 91 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lv 143 (444)
.+.+...|++++..| +++|+|+|=- +..+. +.....+....|.|||||.++
T Consensus 412 kVtVI~gd~eev~LP-EKVDIIVSEw-MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 412 QVTVVSSDMREWVAP-EKADIIVSEL-LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp GEEEEESCTTTCCCS-SCEEEEECCC-CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred eEEEEeCcceeccCC-cccCEEEEEc-CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 678888899988776 6799999732 11111 223367778899999999876
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.6e-06 Score=83.94 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=71.4
Q ss_pred CeEEEECCCcchHHHHHhh------------------------------------------CCceEEEcCcccchHHHHH
Q 013393 46 RNVLDVGCGVASFGAYLLS------------------------------------------HDIIAMSLAPNDVHENQIQ 83 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~------------------------------------------~~V~gvdis~~dis~a~i~ 83 (444)
.+|||++||+|.++..++. ..|+|+|+++.++..+..+
T Consensus 197 ~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~N 276 (385)
T 3ldu_A 197 RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAREN 276 (385)
T ss_dssp SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHH
Confidence 3799999999998887754 2478888888777655543
Q ss_pred HHHHcCC--CcEEEEecCccCCCCCCCccEEEecccccccc---ccHHHHHHHHHhhcCC--CeEEEEEcCC
Q 013393 84 FALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPE 148 (444)
Q Consensus 84 ~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~---~d~~~~L~ei~rvLkP--GG~lvis~p~ 148 (444)
+...+. .+.+...|+.+++.+ ++||+|+|+.-..... .+...+++++.++||+ ||.+.+.++.
T Consensus 277 -a~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 277 -AEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp -HHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred -HHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 333454 578889998888765 5899999975322222 2344677777778877 8888776554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-06 Score=86.51 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=65.1
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCC--CCC--------------
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPS-------------- 106 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp--~~~-------------- 106 (444)
.+|||+|||+|.++..+++. .|+++|+++.++..+..+ ++.++. ++.+...|+.++. +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n-~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYN-IAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHH-HHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 37999999999999999874 688998888777665543 334443 6788888865531 111
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
.+||+|++..- . ..+..++.+.|+|+|.+++.+-
T Consensus 294 ~~fD~Vv~dPP---r----~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 294 YQCETIFVDPP---R----SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCEEEEEECCC---T----TCCCHHHHHHHTTSSEEEEEES
T ss_pred CCCCEEEECcC---c----cccHHHHHHHHhCCCEEEEEEC
Confidence 37999987531 1 1234567777788888887643
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.4e-06 Score=84.45 Aligned_cols=103 Identities=20% Similarity=0.171 Sum_probs=65.5
Q ss_pred CCeEEEECCCcchHHHHHhhC---------------------CceEEEcCcccchHHH------HHHH-HHcC--CCcEE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---------------------DIIAMSLAPNDVHENQ------IQFA-LERG--IPSTL 94 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---------------------~V~gvdis~~dis~a~------i~~a-~e~~--~~~~~ 94 (444)
.-+|+|+||++|..+..+.+. .|...|+...|...-. .+.. .+.+ .+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 447999999999877766541 1334555555543221 1111 2222 23344
Q ss_pred EEec---CccCCCCCCCccEEEeccccccccccHH---------------------------------------HHHHHH
Q 013393 95 GVLG---TKRLPYPSRSFELAHCSRCRIDWLQRDG---------------------------------------ILLLEL 132 (444)
Q Consensus 95 ~~~d---~~~lp~~~~sFDlI~~~~~~l~~~~d~~---------------------------------------~~L~ei 132 (444)
..+. +..-.||+++||+|+++. .+||+.+.+ .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCY-CLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEES-CTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecc-eeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 333568899999999999 599965432 236666
Q ss_pred HhhcCCCeEEEEEcCC
Q 013393 133 DRLLRPGGYFVYSSPE 148 (444)
Q Consensus 133 ~rvLkPGG~lvis~p~ 148 (444)
.+.|+|||+++++...
T Consensus 212 a~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 212 SEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHEEEEEEEEEEEEC
T ss_pred HHHhccCCeEEEEEec
Confidence 8999999999997643
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-05 Score=80.18 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=71.3
Q ss_pred CeEEEECCCcchHHHHHhh--C----------------------------------------CceEEEcCcccchHHHHH
Q 013393 46 RNVLDVGCGVASFGAYLLS--H----------------------------------------DIIAMSLAPNDVHENQIQ 83 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~----------------------------------------~V~gvdis~~dis~a~i~ 83 (444)
..+||.+||+|.++..++. . .++|+|+++.++..+..
T Consensus 196 ~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~- 274 (384)
T 3ldg_A 196 KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK- 274 (384)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH-
T ss_pred CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH-
Confidence 3799999999998877653 1 38888888877655553
Q ss_pred HHHHcCC--CcEEEEecCccCCCCCCCccEEEecccccccc---ccHHHHHHHHHhhcCC--CeEEEEEcCC
Q 013393 84 FALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPE 148 (444)
Q Consensus 84 ~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~---~d~~~~L~ei~rvLkP--GG~lvis~p~ 148 (444)
.+...+. .+.+...|+.+++.+ .+||+|+|+--...-+ .+...+++++.+.||+ ||.+++.++.
T Consensus 275 Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp HHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred HHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 3344454 478889998888765 4899999974211111 3445677778888876 8888876654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.5e-06 Score=79.92 Aligned_cols=90 Identities=13% Similarity=0.248 Sum_probs=57.7
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
|.+|-... ...+.+.+.+.. .++ .+|||||||+|.++..|+++ .|+++|+++.++..+..+.. ...+
T Consensus 8 GQnFL~d~-~i~~~iv~~~~~-----~~~---~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~--~~~~ 76 (255)
T 3tqs_A 8 GQHFLHDS-FVLQKIVSAIHP-----QKT---DTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYN--QQKN 76 (255)
T ss_dssp -CCEECCH-HHHHHHHHHHCC-----CTT---CEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHT--TCTT
T ss_pred CcccccCH-HHHHHHHHhcCC-----CCc---CEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHh--hCCC
Confidence 44554433 344555556543 223 38999999999999999985 57777777655543332221 1357
Q ss_pred cEEEEecCccCCCCC----CCccEEEec
Q 013393 92 STLGVLGTKRLPYPS----RSFELAHCS 115 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~----~sFDlI~~~ 115 (444)
+.+...|+..+++++ ++|| |+++
T Consensus 77 v~~i~~D~~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 77 ITIYQNDALQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp EEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred cEEEEcchHhCCHHHhccCCCeE-EEec
Confidence 889999988887642 5688 6555
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.5e-06 Score=79.08 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC
Q 013393 13 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI 90 (444)
Q Consensus 13 ~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~ 90 (444)
.|.+|-... ...+.+.+.+.. ... +|||||||+|.++..|+++ .|+++|+++.++..+..+.. ..
T Consensus 25 ~GQnfL~d~-~i~~~Iv~~~~~--------~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~ 91 (271)
T 3fut_A 25 FGQNFLVSE-AHLRRIVEAARP--------FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GL 91 (271)
T ss_dssp SSCCEECCH-HHHHHHHHHHCC--------CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TS
T ss_pred CCccccCCH-HHHHHHHHhcCC--------CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CC
Confidence 356665443 345555656543 123 6999999999999999885 68999988877654443222 35
Q ss_pred CcEEEEecCccCCCCCC-CccEEEecc
Q 013393 91 PSTLGVLGTKRLPYPSR-SFELAHCSR 116 (444)
Q Consensus 91 ~~~~~~~d~~~lp~~~~-sFDlI~~~~ 116 (444)
++.+..+|+..+++++. .||.|+++.
T Consensus 92 ~v~vi~~D~l~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 92 PVRLVFQDALLYPWEEVPQGSLLVANL 118 (271)
T ss_dssp SEEEEESCGGGSCGGGSCTTEEEEEEE
T ss_pred CEEEEECChhhCChhhccCccEEEecC
Confidence 68889999988887642 689998764
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=4e-06 Score=88.71 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=69.1
Q ss_pred CeEEEECCCcchHHHHHhh----------------------CCceEEEcCcccchHHHHHHHHHcCCC------cEEEEe
Q 013393 46 RNVLDVGCGVASFGAYLLS----------------------HDIIAMSLAPNDVHENQIQFALERGIP------STLGVL 97 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----------------------~~V~gvdis~~dis~a~i~~a~e~~~~------~~~~~~ 97 (444)
.+|||.+||+|.+...+++ ..++|+|+++..+.-+..+... .+.. ..+...
T Consensus 171 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l-~gi~~~~~~~~~I~~g 249 (541)
T 2ar0_A 171 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL-HDIEGNLDHGGAIRLG 249 (541)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-TTCCCBGGGTBSEEES
T ss_pred CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH-hCCCccccccCCeEeC
Confidence 3799999999998876653 2578888887665544433322 2433 567777
Q ss_pred cCccCC-CCCCCccEEEeccccccc-c------------ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 98 GTKRLP-YPSRSFELAHCSRCRIDW-L------------QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 98 d~~~lp-~~~~sFDlI~~~~~~l~~-~------------~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
|+...+ .+.++||+|+++.-.... . ...-.++..+.+.|||||++.+..|..
T Consensus 250 DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 250 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred CCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 755433 345689999997421111 0 112378999999999999999987653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-06 Score=85.43 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=67.9
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc--------------CCC-cEEEEecCccCCC-CC
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER--------------GIP-STLGVLGTKRLPY-PS 106 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~--------------~~~-~~~~~~d~~~lp~-~~ 106 (444)
+|||+|||+|.++..++.+ .|+++|+++..+..+..+..... +.. +.+...|+..+.. ..
T Consensus 50 ~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~ 129 (378)
T 2dul_A 50 IVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERH 129 (378)
T ss_dssp EEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHST
T ss_pred EEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhcc
Confidence 8999999999999988863 47888888876655554444331 443 6777777654321 13
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
++||+|++.- + .....++..+.+.|||||.++++.
T Consensus 130 ~~fD~I~lDP----~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 130 RYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp TCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEeCC----C-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 5799999543 1 123578999999999999998864
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.1e-06 Score=84.39 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=66.7
Q ss_pred CeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCC---cEEEEecCccC-C-CCCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRL-P-YPSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~---~~~~~~d~~~l-p-~~~~sFDlI~~~ 115 (444)
.+|||++||+|.++..++.+ .|+++|+++..+..+.. .++.++.. +.+...|+..+ . ...++||+|++.
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~-N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE-NFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 38999999999999998872 46778777765544443 33334543 67777775442 1 124679999976
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
- + .....++..+.+.|+|||+++++.
T Consensus 133 P----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 4 2 223468999999999999998865
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.7e-05 Score=76.04 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=73.0
Q ss_pred CCeEEEECCCcchHHHHHhh----------------CCceEEEcCcc---cchHH------HHHHHHHc-----------
Q 013393 45 IRNVLDVGCGVASFGAYLLS----------------HDIIAMSLAPN---DVHEN------QIQFALER----------- 88 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~----------------~~V~gvdis~~---dis~a------~i~~a~e~----------- 88 (444)
..+|||+|||+|..+..+++ ..+++++..|. ++..+ ....|++.
T Consensus 61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~ 140 (257)
T 2qy6_A 61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 140 (257)
T ss_dssp EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence 34899999999976655432 25677887763 22211 01112211
Q ss_pred --------CCCcEEEEecCcc-CCCCC----CCccEEEecccccccccc--HHHHHHHHHhhcCCCeEEEEEcCCCCCCC
Q 013393 89 --------GIPSTLGVLGTKR-LPYPS----RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAHD 153 (444)
Q Consensus 89 --------~~~~~~~~~d~~~-lp~~~----~sFDlI~~~~~~l~~~~d--~~~~L~ei~rvLkPGG~lvis~p~~~~~~ 153 (444)
..++.+..+|+.+ ++..+ ..||+|+.-...-.-.++ ...+|.++.++|||||.|+.-+.
T Consensus 141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa------ 214 (257)
T 2qy6_A 141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS------ 214 (257)
T ss_dssp EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC------
T ss_pred hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC------
Confidence 1234566777554 44222 279999974311111122 25799999999999999985211
Q ss_pred hhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 154 PENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 154 ~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
. ..+...+...||++....+
T Consensus 215 -a-----~~vrr~L~~aGF~v~~~~g 234 (257)
T 2qy6_A 215 -A-----GFVRRGLQEAGFTMQKRKG 234 (257)
T ss_dssp -B-----HHHHHHHHHHTEEEEEECC
T ss_pred -C-----HHHHHHHHHCCCEEEeCCC
Confidence 1 2467778889998775433
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.92 E-value=9e-06 Score=87.33 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=65.6
Q ss_pred CCeEEEECCCcchHHHH---Hh---h---------C--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCC--
Q 013393 45 IRNVLDVGCGVASFGAY---LL---S---------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-- 105 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~---La---~---------~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~-- 105 (444)
...|||||||+|.+... .+ + . .|++++-++......+......-+..+.+...+++++..|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 45799999999987532 21 2 1 6888888875543333333322245688889998887663
Q ss_pred ---CCCccEEEecccccccc--ccHHHHHHHHHhhcCCCeEEE
Q 013393 106 ---SRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 106 ---~~sFDlI~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lv 143 (444)
.++.|+|+|-. +..+. +-....|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSEl-mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSEL-LGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECC-CBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEec-cccccchhccHHHHHHHHHhCCCCcEEE
Confidence 47899999754 23332 222467888899999999866
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.88 E-value=7.2e-06 Score=82.20 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=66.3
Q ss_pred CeEEEECCCcchHHHHHhhC--------------------CceEEEcCcccchHHHHHHHHH-cCCCcEEEEec---Ccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLG---TKR 101 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--------------------~V~gvdis~~dis~a~i~~a~e-~~~~~~~~~~d---~~~ 101 (444)
-+|+|+||++|..+..+.+. .|...|+...|..........- ...+..|..+. +..
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 46999999999766554432 3456677777764443222110 00022343332 444
Q ss_pred CCCCCCCccEEEecccccccccc---------------------------------HHHHHHHHHhhcCCCeEEEEEcC
Q 013393 102 LPYPSRSFELAHCSRCRIDWLQR---------------------------------DGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 102 lp~~~~sFDlI~~~~~~l~~~~d---------------------------------~~~~L~ei~rvLkPGG~lvis~p 147 (444)
-.||++++|+|+|+. .+||+.+ ...+|+...+.|+|||.++++..
T Consensus 133 rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 133 RLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred ccCCCCceEEEEehh-hhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 568999999999999 5999643 23468888999999999998753
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=77.55 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=61.7
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEe
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC 114 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~ 114 (444)
|+++. +|||+|||+|.|+.++++. .+.|+|+.......+. .. ...+.++.....+.....++.+++|+|+|
T Consensus 88 Lk~~~---~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi-~~-~~~g~~ii~~~~~~dv~~l~~~~~DvVLS 162 (282)
T 3gcz_A 88 VKPTG---IVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI-MR-TTLGWNLIRFKDKTDVFNMEVIPGDTLLC 162 (282)
T ss_dssp CCCCE---EEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-CC-CBTTGGGEEEECSCCGGGSCCCCCSEEEE
T ss_pred CCCCC---EEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccc-cc-ccCCCceEEeeCCcchhhcCCCCcCEEEe
Confidence 44554 8999999999999998863 4566776542110000 00 00122333333332333455688999999
Q ss_pred cccccc----ccccHH--HHHHHHHhhcCCC--eEEEEEcCC
Q 013393 115 SRCRID----WLQRDG--ILLLELDRLLRPG--GYFVYSSPE 148 (444)
Q Consensus 115 ~~~~l~----~~~d~~--~~L~ei~rvLkPG--G~lvis~p~ 148 (444)
..+ .+ +.+... .+|.-+.++|+|| |.|++-.-.
T Consensus 163 DmA-pnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 163 DIG-ESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred cCc-cCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 763 33 222222 3577778899999 999986544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.80 E-value=9.3e-05 Score=72.04 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=73.9
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH-----cCCCcEEEEecCccC-CCCCCCccEE
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL-PYPSRSFELA 112 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e-----~~~~~~~~~~d~~~l-p~~~~sFDlI 112 (444)
.++++||=||-|.|..++.+++. .|+.+++++.-+.-+..-+... ...++.+...|.... .-..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45679999999999999999884 4566666654332222112111 135678888886553 3446789999
Q ss_pred Eeccccccccc----cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhh
Q 013393 113 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN 156 (444)
Q Consensus 113 ~~~~~~l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~ 156 (444)
+.-.. -...+ .-..+++.+.+.|+|||.++....+++...+..
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~ 208 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEA 208 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHH
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHH
Confidence 96431 11111 113799999999999999999776655444433
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00018 Score=72.03 Aligned_cols=120 Identities=10% Similarity=-0.010 Sum_probs=75.4
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
+.+|. ++||+||.+|.|+..++++ .|+++|..+.+. .. ....++.+...|...+..+.+.||+|+|-.
T Consensus 209 l~~G~---~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~--~l-----~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm 278 (375)
T 4auk_A 209 LANGM---WAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ--SL-----MDTGQVTWLREDGFKFRPTRSNISWMVCDM 278 (375)
T ss_dssp SCTTC---EEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH--HH-----HTTTCEEEECSCTTTCCCCSSCEEEEEECC
T ss_pred CCCCC---EEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh--hh-----ccCCCeEEEeCccccccCCCCCcCEEEEcC
Confidence 45555 9999999999999999986 588888776542 11 123567888888777766677899999976
Q ss_pred ccccccccHHHHHHHHHhhcC---CCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeE
Q 013393 117 CRIDWLQRDGILLLELDRLLR---PGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 173 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLk---PGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~ 173 (444)
. .++...+.-+.+.|. .++.++..-.....+..+.......+.+.++..|+.
T Consensus 279 ~-----~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 279 V-----EKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp S-----SCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred C-----CChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcc
Confidence 2 234444444444444 445443322221112222333455677778888774
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.3e-06 Score=80.97 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=49.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCc-------ccchHHHHHHHHHcC--CCcEEEEecCccC-C-CCC--CCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAP-------NDVHENQIQFALERG--IPSTLGVLGTKRL-P-YPS--RSFE 110 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~-------~dis~a~i~~a~e~~--~~~~~~~~d~~~l-p-~~~--~sFD 110 (444)
.+|||+|||+|.++..+++. .|+++|+++ ..+..+..+ +...+ .++.+...|...+ + +++ ++||
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n-~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLN-PETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHS-HHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred CeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhH-HHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 37999999999999999874 688998888 444333222 11122 2378888887663 3 444 6899
Q ss_pred EEEeccc
Q 013393 111 LAHCSRC 117 (444)
Q Consensus 111 lI~~~~~ 117 (444)
+|++...
T Consensus 164 ~V~~dP~ 170 (258)
T 2r6z_A 164 IVYLDPM 170 (258)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999763
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.4e-05 Score=73.96 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=55.3
Q ss_pred CCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--C----ceEEEcCcccchHHHHHHHH
Q 013393 13 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--D----IIAMSLAPNDVHENQIQFAL 86 (444)
Q Consensus 13 ~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~----V~gvdis~~dis~a~i~~a~ 86 (444)
.|.+|.... ...+.+.+.+.. .++ .+|||||||+|.++..|+++ . |+++|+++.++..+..+ +
T Consensus 20 ~GQ~fL~d~-~i~~~iv~~~~~-----~~~---~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~- 88 (279)
T 3uzu_A 20 FGQNFLVDH-GVIDAIVAAIRP-----ERG---ERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F- 88 (279)
T ss_dssp CSCCEECCH-HHHHHHHHHHCC-----CTT---CEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H-
T ss_pred CCccccCCH-HHHHHHHHhcCC-----CCc---CEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c-
Confidence 466665553 345556666643 223 38999999999999999873 4 88888887665544433 1
Q ss_pred HcCCCcEEEEecCccCCCC
Q 013393 87 ERGIPSTLGVLGTKRLPYP 105 (444)
Q Consensus 87 e~~~~~~~~~~d~~~lp~~ 105 (444)
..++.+...|+..++++
T Consensus 89 --~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 89 --GELLELHAGDALTFDFG 105 (279)
T ss_dssp --GGGEEEEESCGGGCCGG
T ss_pred --CCCcEEEECChhcCChh
Confidence 45688899999888865
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=6.6e-05 Score=72.63 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=68.5
Q ss_pred cccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 16 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 16 ~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
.-.+++-+.++...+ .+ ++++ ++|||+||++|.|+.++++. .|.|+|+...+...... ....+.+
T Consensus 62 yrSRaa~KL~ei~ek--~l----~~~g---~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~ 130 (300)
T 3eld_A 62 SVSRGAAKIRWLHER--GY----LRIT---GRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWN 130 (300)
T ss_dssp CSSTTHHHHHHHHHH--TS----CCCC---EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGG
T ss_pred ccchHHHHHHHHHHh--CC----CCCC---CEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCc
Confidence 344555555555544 32 3344 48999999999999999974 35666665421100000 0000112
Q ss_pred cEEEEecCccCCCCCCCccEEEeccccccccc----cH---HHHHHHHHhhcCCC-eEEEEEcCC
Q 013393 92 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ----RD---GILLLELDRLLRPG-GYFVYSSPE 148 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~----d~---~~~L~ei~rvLkPG-G~lvis~p~ 148 (444)
+.....+.....++.+.+|+|+|..+ .+ .. |. ..+|.-+.++|+|| |.|++-...
T Consensus 131 iv~~~~~~di~~l~~~~~DlVlsD~A-Pn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 131 IVKFKDKSNVFTMPTEPSDTLLCDIG-ES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp GEEEECSCCTTTSCCCCCSEEEECCC-CC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred eEEeecCceeeecCCCCcCEEeecCc-CC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 22222222223345678999999652 33 21 11 14577778899999 999996544
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=7.4e-05 Score=71.06 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=52.7
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc-C
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-G 89 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~-~ 89 (444)
|.+|... ....+.+.+.+.. .+ ..+|||||||+|.++..++++ .++++|++ +.+++.++++ .
T Consensus 10 GQnfl~d-~~i~~~iv~~~~~-----~~---~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid-----~~~~~~~~~~~~ 75 (249)
T 3ftd_A 10 GQHLLVS-EGVLKKIAEELNI-----EE---GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELD-----REMVENLKSIGD 75 (249)
T ss_dssp CSSCEEC-HHHHHHHHHHTTC-----CT---TCEEEEEESCHHHHHHHHTTSCCSEEEEECCC-----HHHHHHHTTSCC
T ss_pred cccccCC-HHHHHHHHHhcCC-----CC---cCEEEEEcCchHHHHHHHHHcCCCeEEEEECC-----HHHHHHHHhccC
Confidence 5555443 3345556666543 22 338999999999999999876 35566554 5555666554 3
Q ss_pred CCcEEEEecCccCCCCC
Q 013393 90 IPSTLGVLGTKRLPYPS 106 (444)
Q Consensus 90 ~~~~~~~~d~~~lp~~~ 106 (444)
.++.+...|+..+++++
T Consensus 76 ~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 76 ERLEVINEDASKFPFCS 92 (249)
T ss_dssp TTEEEECSCTTTCCGGG
T ss_pred CCeEEEEcchhhCChhH
Confidence 45788889988888764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00018 Score=78.47 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=66.6
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhh----ccccc-----cccccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG-----TVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~----rg~~~-----~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..|+|+.++-|+|+-++..... -.|+-+|.. .-|...-+ -|+-+ +-.|..+.++....+||+|-++--
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 3799999999999877653321 135555543 33443222 23321 112332323334578999987653
Q ss_pred -cccccc------CCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhcccee
Q 013393 360 -FSEIEE------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 410 (444)
Q Consensus 360 -~~~~~~------~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~ 410 (444)
|+.-.+ ..-....++-+.-|+|+|||.+++.........-.+.+....++.
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~ 676 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKA 676 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEE
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCce
Confidence 321100 012356788899999999999999765522222244455555654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.63 E-value=6.8e-05 Score=79.30 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=63.5
Q ss_pred eEEEECCCcchHHHHHhh-------------------CCceEEEcCcccchHHHHHHHHHcCCCcEE--EEecCccCC-C
Q 013393 47 NVLDVGCGVASFGAYLLS-------------------HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLP-Y 104 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-------------------~~V~gvdis~~dis~a~i~~a~e~~~~~~~--~~~d~~~lp-~ 104 (444)
+|||.+||+|.+...+++ ..+.|+|+++..+.-+..+... .+....+ ...|....+ +
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI-RGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH-TTCCCBCCSSSCCTTTSCSC
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH-hCCCcccceeccchhcCccc
Confidence 899999999988776542 2355665555444333333222 3444333 455644443 4
Q ss_pred CCCCccEEEeccccc--ccc----------------------c----cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 105 PSRSFELAHCSRCRI--DWL----------------------Q----RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 105 ~~~sFDlI~~~~~~l--~~~----------------------~----d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
++.+||+|+++--.. .|. + ..-.++..+.+.|+|||++.+..|..
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 567899999973211 110 0 01168999999999999999987764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0001 Score=77.94 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=76.5
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh-------CCceEEEcCcccchHHHHHHHHHcCC---CcE
Q 013393 24 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-------HDIIAMSLAPNDVHENQIQFALERGI---PST 93 (444)
Q Consensus 24 y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~-------~~V~gvdis~~dis~a~i~~a~e~~~---~~~ 93 (444)
..+.+.+++.... .+ ....+|||.+||+|.+...+++ ..+.|+|+++....-+..+... .+. +..
T Consensus 205 Vv~lmv~ll~~~~---~~-~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~~~~ 279 (542)
T 3lkd_A 205 VAKLMTQIAFLGR---ED-KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL-HGVPIENQF 279 (542)
T ss_dssp HHHHHHHHHHTTC---TT-CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH-TTCCGGGEE
T ss_pred HHHHHHHHHhccc---CC-CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH-cCCCcCccc
Confidence 4555555554211 01 2234899999999988776654 2477888877665555444332 344 356
Q ss_pred EEEecCccC--C-CCCCCccEEEecccc-cccc------c--------------c-HHHHHHHHHhhcC-CCeEEEEEcC
Q 013393 94 LGVLGTKRL--P-YPSRSFELAHCSRCR-IDWL------Q--------------R-DGILLLELDRLLR-PGGYFVYSSP 147 (444)
Q Consensus 94 ~~~~d~~~l--p-~~~~sFDlI~~~~~~-l~~~------~--------------d-~~~~L~ei~rvLk-PGG~lvis~p 147 (444)
+...|.... | .+...||+|+++--. ..|. . + .-.++..+.+.|+ |||++.+..|
T Consensus 280 I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 280 LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred eEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 777886554 4 346789999997210 1110 0 0 1248999999999 9999998877
Q ss_pred CC
Q 013393 148 EA 149 (444)
Q Consensus 148 ~~ 149 (444)
..
T Consensus 360 ~g 361 (542)
T 3lkd_A 360 HG 361 (542)
T ss_dssp TH
T ss_pred ch
Confidence 64
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00029 Score=64.20 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=91.3
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccccccccccccCC---CCCC-cccchhhcccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESF---STYP-RTYDLLHAWKVFSEI 363 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~~~~~~~---~~y~-~~~dl~h~~~~~~~~ 363 (444)
-..|+|+.++.|.++..|..... +|+-++- +..+...-+++.+...+.-.+.+ +..+ .+||+|.+.+++. .
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~ 128 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H 128 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h
Confidence 37899999999999999987643 5666664 45666666665444333222222 3233 4599999998877 2
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEeccH--------------------------------HHHHHHHHHHhhccceeE
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRDKS--------------------------------SIINYIRKFITALKWDGW 411 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd~~--------------------------------~~~~~~~~~~~~~~w~~~ 411 (444)
.+...+|-++-|+|+|||.+++.+.. ...+++++++..-.+++.
T Consensus 129 ----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 129 ----QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp ----SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred ----hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 35789999999999999999996530 146889999999999885
Q ss_pred EeccccccCCCCCCCceEEEEEe
Q 013393 412 LSEVEPRIDALSSSEERVLIAKK 434 (444)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~k 434 (444)
.. .+...........-+++++|
T Consensus 205 ~~-~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 205 SL-QEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp EE-ECCCCTTCSSCSCEEEEEEE
T ss_pred EE-ecCCCCCCCCceeEEEEeec
Confidence 32 22111111111345667776
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=3.6e-05 Score=75.37 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=45.4
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CC---CCCccEEEecc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YP---SRSFELAHCSR 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~---~~sFDlI~~~~ 116 (444)
+|||+|||+|.++..++++ .|+++|+++.++..+..+. ...+.++.+...|+..++ ++ .++||.|++..
T Consensus 29 ~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~-~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 29 IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-KEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp EEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-GGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred EEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEEcC
Confidence 8999999999999999874 5777777665554433222 122346777777776654 11 14688887643
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0002 Score=78.17 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=66.6
Q ss_pred CeEEEECCCcchHHHHHhhC-------CceEEEcCcccchHHHHHHHHH-----cCCCc-EEEEecCccC-CCCCCCccE
Q 013393 46 RNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALE-----RGIPS-TLGVLGTKRL-PYPSRSFEL 111 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~-------~V~gvdis~~dis~a~i~~a~e-----~~~~~-~~~~~d~~~l-p~~~~sFDl 111 (444)
.+|||.|||+|.+...+++. .++|+|+++..+..+..+.... .+... .+...|.... +.+.+.||+
T Consensus 323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFDV 402 (878)
T 3s1s_A 323 EVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSV 402 (878)
T ss_dssp CEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEEE
T ss_pred CEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCCE
Confidence 48999999999999888763 3688888887655442222111 12222 3433333332 233578999
Q ss_pred EEecccccc-ccc--------------------------c-HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 112 AHCSRCRID-WLQ--------------------------R-DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 112 I~~~~~~l~-~~~--------------------------d-~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
|+++--... ... + ...++..+.+.|+|||++.+..|..+
T Consensus 403 VIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 403 VVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp EEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred EEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 999742211 000 0 23578889999999999999888754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.5e-05 Score=77.74 Aligned_cols=70 Identities=13% Similarity=0.004 Sum_probs=51.2
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc-CC-CcEEEEecCccC-CC-CCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GI-PSTLGVLGTKRL-PY-PSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~-~~-~~~~~~~d~~~l-p~-~~~sFDlI~~~ 115 (444)
.+|||+|||+|..+..+++. .|+++|+++.++..+..+..... +. ++.+...|.... +. ++++||+|++.
T Consensus 95 ~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp CEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 48999999999999999875 58888888877765554443320 43 578888887663 32 23589999985
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0004 Score=63.94 Aligned_cols=90 Identities=8% Similarity=-0.031 Sum_probs=57.3
Q ss_pred CeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCC----CcEEEEecCcc---------------CC
Q 013393 46 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKR---------------LP 103 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~----~~~~~~~d~~~---------------lp 103 (444)
++|||+||| .-+..+++ ..|+++|.++.....+...++ +.+. ++.+..++... ++
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~-~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLA-ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHH-HSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 489999996 45555554 467788777755444433333 3343 46677777432 22
Q ss_pred --------C-CCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEE
Q 013393 104 --------Y-PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 104 --------~-~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvi 144 (444)
. ..++||+|+.-. ......+..+.+.|+|||.+++
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg------~k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDG------RFRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECS------SSHHHHHHHHHHHCSSCEEEEE
T ss_pred HHhhhhhccccCCCCCEEEEeC------CCchhHHHHHHHhcCCCeEEEE
Confidence 1 136899999654 2223667778899999999976
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00052 Score=65.07 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC-Cc---eEEEcCcccchHHHHHHHHHcCCCc-EEEEe-cCccCCCCCCCccEE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH-DI---IAMSLAPNDVHENQIQFALERGIPS-TLGVL-GTKRLPYPSRSFELA 112 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~-~V---~gvdis~~dis~a~i~~a~e~~~~~-~~~~~-d~~~lp~~~~sFDlI 112 (444)
++|+. +|||+||+.|+|+.+.++. ++ .|..+. .|++..-+. ....+.++ .|... |+..++ ...+|+|
T Consensus 71 ikpg~---~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig-~D~~~~P~~-~~~~Gv~~i~~~~G~Df~~~~--~~~~DvV 143 (269)
T 2px2_A 71 VQPIG---KVVDLGCGRGGWSYYAATMKNVQEVRGYTKG-GPGHEEPML-MQSYGWNIVTMKSGVDVFYKP--SEISDTL 143 (269)
T ss_dssp CCCCE---EEEEETCTTSHHHHHHTTSTTEEEEEEECCC-STTSCCCCC-CCSTTGGGEEEECSCCGGGSC--CCCCSEE
T ss_pred CCCCC---EEEEcCCCCCHHHHHHhhhcCCCCceeEEEc-cccccCCCc-ccCCCceEEEeeccCCccCCC--CCCCCEE
Confidence 45666 9999999999999999885 12 344333 231000000 00011122 22224 666543 4679999
Q ss_pred Eecccc--ccccccHH---HHHHHHHhhcCCCe-EEEEEcCC
Q 013393 113 HCSRCR--IDWLQRDG---ILLLELDRLLRPGG-YFVYSSPE 148 (444)
Q Consensus 113 ~~~~~~--l~~~~d~~---~~L~ei~rvLkPGG-~lvis~p~ 148 (444)
+|-.+- -+..-|.. .+|.-+.++|+||| -|++-...
T Consensus 144 LSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 144 LCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 995421 11111222 24656668999999 88875433
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.37 E-value=9.6e-05 Score=70.75 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=57.9
Q ss_pred CeEEEECCCcchHHHHHhh--CCceEEEcCcccchH--HHHHHHHHc----C---CCcEEEEecCcc-CCCCCCCccEEE
Q 013393 46 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHE--NQIQFALER----G---IPSTLGVLGTKR-LPYPSRSFELAH 113 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~--a~i~~a~e~----~---~~~~~~~~d~~~-lp~~~~sFDlI~ 113 (444)
.+|||+|||+|..+..+++ ..|+++|.++....- ..++.++++ + .++.+...|... ++....+||+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~ 169 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence 3799999999999999986 478999988854221 222233221 1 246777888655 443234799999
Q ss_pred eccccccccccHHHHHHHHHhhcCCCe
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGG 140 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG 140 (444)
+... .+. .....++++..++|++.+
T Consensus 170 lDP~-y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 170 LDPM-FPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp ECCC-CCC-CCC-----HHHHHHHHHS
T ss_pred EcCC-CCC-cccchHHHHHHHHHHHhh
Confidence 9763 444 333456777777777755
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00021 Score=68.07 Aligned_cols=64 Identities=8% Similarity=0.033 Sum_probs=44.0
Q ss_pred eEEEECCCcchHHHHHhh-CC--ceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCC-----CCccEEEec
Q 013393 47 NVLDVGCGVASFGAYLLS-HD--IIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPS-----RSFELAHCS 115 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-~~--V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~-----~sFDlI~~~ 115 (444)
+|||||||+|.++. +.. .. |+++|+++. +++.++++. .++.+...|+..+++++ +..|.|+++
T Consensus 24 ~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~-----~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsN 97 (252)
T 1qyr_A 24 AMVEIGPGLAALTE-PVGERLDQLTVIELDRD-----LAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGN 97 (252)
T ss_dssp CEEEECCTTTTTHH-HHHTTCSCEEEECCCHH-----HHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred EEEEECCCCcHHHH-hhhCCCCeEEEEECCHH-----HHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEEC
Confidence 79999999999999 755 34 777766654 445555542 35788888988877642 134567665
Q ss_pred c
Q 013393 116 R 116 (444)
Q Consensus 116 ~ 116 (444)
.
T Consensus 98 l 98 (252)
T 1qyr_A 98 L 98 (252)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00032 Score=61.06 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=53.6
Q ss_pred eEEEECCCcc-hHHHHHhh-C--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCC--CCccEEEecccccc
Q 013393 47 NVLDVGCGVA-SFGAYLLS-H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS--RSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG-~~a~~La~-~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~--~sFDlI~~~~~~l~ 120 (444)
+|||||||.| ..+..|++ . .|+++|+++..+. +...|... |..+ +.||+|++.+.
T Consensus 38 rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~-P~~~~Y~~~DLIYsirP--- 98 (153)
T 2k4m_A 38 RVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS-PRMEIYRGAALIYSIRP--- 98 (153)
T ss_dssp EEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS-CCHHHHTTEEEEEEESC---
T ss_pred cEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC-CcccccCCcCEEEEcCC---
Confidence 8999999999 69999986 5 4788888887653 44555443 3322 47999998764
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
.++....+.++.+-.. .-+++.
T Consensus 99 -P~El~~~i~~lA~~v~--adliI~ 120 (153)
T 2k4m_A 99 -PAEIHSSLMRVADAVG--ARLIIK 120 (153)
T ss_dssp -CTTTHHHHHHHHHHHT--CEEEEE
T ss_pred -CHHHHHHHHHHHHHcC--CCEEEE
Confidence 3455667777776544 556654
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=4.7e-05 Score=76.32 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=67.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC-------CCcEEEEecCccCC-CC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-------IPSTLGVLGTKRLP-YP 105 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~-------~~~~~~~~d~~~lp-~~ 105 (444)
+.++|. +|||+.+|.|.=+.++++. .+++.|+++.-+.... +..+..+ .++.+...|...++ ..
T Consensus 145 ~~~pg~---~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~-~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~ 220 (359)
T 4fzv_A 145 GLQPGD---IVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQ-KILHSYVPEEIRDGNQVRVTSWDGRKWGELE 220 (359)
T ss_dssp CCCTTE---EEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHH-HHHHHHSCTTTTTSSSEEEECCCGGGHHHHS
T ss_pred CCCCCC---EEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHH-HHHHHhhhhhhccCCceEEEeCchhhcchhc
Confidence 445555 8999999999988888774 3555555543222111 1222212 35666677766654 34
Q ss_pred CCCccEEEec-cccc------c------cccc----------HHHHHHHHHhhcCCCeEEEEEcCCCCC
Q 013393 106 SRSFELAHCS-RCRI------D------WLQR----------DGILLLELDRLLRPGGYFVYSSPEAYA 151 (444)
Q Consensus 106 ~~sFDlI~~~-~~~l------~------~~~d----------~~~~L~ei~rvLkPGG~lvis~p~~~~ 151 (444)
.+.||.|++- -|.- . +... ..++|..+.+.|||||+++.++=+...
T Consensus 221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 5789999961 1211 1 1000 126888999999999999998766543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0031 Score=60.93 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=80.4
Q ss_pred CCeEEEECCCcchHHHHHh---------hCCceEEEcCccc------------------------ch-HHHHHHHHHcC-
Q 013393 45 IRNVLDVGCGVASFGAYLL---------SHDIIAMSLAPND------------------------VH-ENQIQFALERG- 89 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La---------~~~V~gvdis~~d------------------------is-~a~i~~a~e~~- 89 (444)
+++|||+|+..|..+..++ .+.++++|..... .+ +...+...+.+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 4489999999998766653 3568888864211 00 11112222233
Q ss_pred --CCcEEEEecCcc-CC-CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHH
Q 013393 90 --IPSTLGVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 165 (444)
Q Consensus 90 --~~~~~~~~d~~~-lp-~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~ 165 (444)
.++.+..+++.+ +| .++++||+|+.-.. .+ ......|..+...|+|||++++-+... .+.. -..+.+
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD--~y-~~~~~~Le~~~p~L~pGGiIv~DD~~~---~~G~---~~Av~E 257 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD--LY-ESTWDTLTNLYPKVSVGGYVIVDDYMM---CPPC---KDAVDE 257 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC--SH-HHHHHHHHHHGGGEEEEEEEEESSCTT---CHHH---HHHHHH
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC--cc-ccHHHHHHHHHhhcCCCEEEEEcCCCC---CHHH---HHHHHH
Confidence 457888887544 44 44578999996532 12 334578999999999999999854421 1222 234455
Q ss_pred HHHhcCeE--EEeeecceeEeecc
Q 013393 166 LLKSMCWK--IVSKKDQTVIWAKP 187 (444)
Q Consensus 166 l~~~~gf~--~v~~~~~~~~w~k~ 187 (444)
+.++.+++ +........+|+|+
T Consensus 258 f~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 258 YRAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp HHHHTTCCSCCEECSSSCEEEECC
T ss_pred HHHhcCCceEEEEecCEEEEEEeC
Confidence 55655643 33444455677764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0032 Score=57.18 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=80.8
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCCCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCC
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 368 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c 368 (444)
-..|+|+.++.|.++..|. . +|+=++.... . +-+.+.-.+.++.-+.+||+|.+..++. . -
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-~-----~v~~~D~s~~-~-------~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~----~ 128 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-N-----PVHCFDLASL-D-------PRVTVCDMAQVPLEDESVDVAVFCLSLM-G----T 128 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-S-----CEEEEESSCS-S-------TTEEESCTTSCSCCTTCEEEEEEESCCC-S----S
T ss_pred CCeEEEECCcCCHHHHHhh-c-----cEEEEeCCCC-C-------ceEEEeccccCCCCCCCEeEEEEehhcc-c----c
Confidence 3579999999999999884 2 3333332211 1 1111212223443357999999988875 2 2
Q ss_pred ChhhhhhhhcccccCCcEEEEeccHH---HHHHHHHHHhhccceeEEeccccccCCCCCCCceEEEEEec
Q 013393 369 SFEDLLIEMDRMLRPEGFVIIRDKSS---IINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 369 ~~~~~~~e~drilrp~g~~~~rd~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
+...+|-|+-|+|+|||.+++-+... ..+++.+++....++..... .. .+.--+++++|.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~-----~~~~~~~~~~k~ 191 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD--LT-----NSHFFLFDFQKT 191 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE--CC-----STTCEEEEEEEC
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe--cC-----CCeEEEEEEEec
Confidence 57899999999999999999976544 46788888888888874321 11 123468888886
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=68.46 Aligned_cols=99 Identities=11% Similarity=0.213 Sum_probs=67.2
Q ss_pred ceeEEEecccccchhhhhcc-CCCceEEEeccccC-CCchhHHhhc----cccccccccccCCCCCCcccchhhcccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~-~~~~wv~~~~~~~~-~~~l~~~~~r----g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
.-..|+|+.++.|+++..|. ..+. +|+-++- +..+...-++ |+-.-.+-.+..+..+|.+||+|.+.++|.
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~ 140 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFE 140 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred CcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchh
Confidence 33579999999999998887 3343 5655554 3555544443 442221112222233458999999999988
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++.. -+...++-|+-|+|+|||.+++.+
T Consensus 141 ~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 141 HFGH--ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp GTCT--TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCh--HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5532 357899999999999999999954
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0018 Score=59.08 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc-------c
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-------I 334 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~-------~ 334 (444)
.....+.+.....+. ...-..|+|+.++.|.++..|.+.. ..-+|+-++- +..+...-++ |+ +
T Consensus 12 ~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v 86 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLK----SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86 (219)
T ss_dssp CHHHHHHHHHHHHHH----HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE
T ss_pred cchHHHHHHHHHHHh----hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcce
Confidence 344445544444443 2234589999999999999997642 1124555553 3444433322 21 2
Q ss_pred cccc-ccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH-------------------
Q 013393 335 GTVH-DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------------------- 394 (444)
Q Consensus 335 ~~~~-~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~------------------- 394 (444)
-+++ |. +..+.-+.+||+|-+..++..+.. -.+..++-++-|+|+|||.+++-+..+
T Consensus 87 ~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T 3jwg_A 87 SLFQSSL-VYRDKRFSGYDAATVIEVIEHLDE--NRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHR 163 (219)
T ss_dssp EEEECCS-SSCCGGGTTCSEEEEESCGGGCCH--HHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCT
T ss_pred EEEeCcc-cccccccCCCCEEEEHHHHHhCCH--HHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCce
Confidence 2222 33 334444579999999999985532 135789999999999999887744332
Q ss_pred ---HHHHHH----HHHhhccceeEEeccccccCCCCCCCceEEEEEec
Q 013393 395 ---IINYIR----KFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 395 ---~~~~~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
..++++ .++..-.+++...-+-.. .+......+|-||+|+
T Consensus 164 ~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~-~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 164 FEWTRKEFQTWAVKVAEKYGYSVRFLQIGEI-DDEFGSPTQMGVFTLG 210 (219)
T ss_dssp TSBCHHHHHHHHHHHHHHHTEEEEEEEESCC-CTTSCCSEEEEEEEEC
T ss_pred eeecHHHHHHHHHHHHHHCCcEEEEEecCCc-cccCCCCeEEEEEecc
Confidence 123344 778888888876533222 2233457899999986
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0014 Score=61.70 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc-cccccccccCCC
Q 013393 268 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFS 345 (444)
Q Consensus 268 ~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~~ 345 (444)
.|....+.....+...+. .-..|+|+.++.|.++..|.... .+|+-++- +..+...-++-- +-+.+.=.+.++
T Consensus 32 ~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~ 106 (263)
T 3pfg_A 32 DYHREAADLAALVRRHSP--KAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFS 106 (263)
T ss_dssp CHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCC
T ss_pred CHHHHHHHHHHHHHhhCC--CCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCC
Confidence 455555544444543333 23579999999999999998763 25666664 345555444421 222222233445
Q ss_pred CCCcccchhhccc-cccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 346 TYPRTYDLLHAWK-VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 346 ~y~~~~dl~h~~~-~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
. +.+||+|.+.. +|..+.. .-+...+|-++-|+|+|||.++|.
T Consensus 107 ~-~~~fD~v~~~~~~l~~~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 107 L-GRRFSAVTCMFSSIGHLAG-QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp C-SCCEEEEEECTTGGGGSCH-HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred c-cCCcCEEEEcCchhhhcCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4 89999999987 8774421 124678899999999999999994
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0017 Score=59.92 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=64.0
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc-cccccccccCCCCCCcccchhhccc-ccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWK-VFS 361 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~-~~~~~~~~~~~~~y~~~~dl~h~~~-~~~ 361 (444)
-..|+|+.++.|.++..|..... +|+-++. +..+...-++ |+ +-+.+.=.+.++ +|.+||+|.+.+ +|.
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-INRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CSCCEEEEEECTTGGG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC-ccCCceEEEEcCcccc
Confidence 35899999999999999876532 4555554 3444433322 32 222222223333 458999999998 887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
.+.. .-+...+|-++-|+|+|||.+++
T Consensus 114 ~~~~-~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 114 YIID-SDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCCS-HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 5421 12478899999999999999998
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00033 Score=65.38 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=81.7
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc----ccccccccccCCCCCCcccchhhccc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg----~~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
+....-..|+|+.++.|.++..|...- .-+|+-++- +..+...-++- -+-+.+.-.+.++.-+.+||+|.+.+
T Consensus 89 l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 166 (254)
T 1xtp_A 89 LPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW 166 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred hcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcc
Confidence 344455689999999999998886532 124555553 34454444431 12222222233454458999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEeccH----------------HHHHHHHHHHhhccceeE
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDGW 411 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~----------------~~~~~~~~~~~~~~w~~~ 411 (444)
++..+.. -+...+|-++-|+|+|||.++|.+.. ...++++++++.-.++..
T Consensus 167 ~l~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 233 (254)
T 1xtp_A 167 TAIYLTD--ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp CGGGSCH--HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred hhhhCCH--HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence 8875421 13788999999999999999997731 124677888887777763
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0017 Score=62.73 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=63.2
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCC-cEEEEe-cCccCCCCCCCccEE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVL-GTKRLPYPSRSFELA 112 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~-~~~~~~-d~~~lp~~~~sFDlI 112 (444)
+++++ +|||+||++|.|+.+.+.. .|.|+|+-.....+.+ ..++.+-+ +.+... |+..++. ..+|+|
T Consensus 92 l~~~~---~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~--~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~i 164 (321)
T 3lkz_A 92 LEPVG---KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ--LVQSYGWNIVTMKSGVDVFYRPS--ECCDTL 164 (321)
T ss_dssp CCCCE---EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC--CCCBTTGGGEEEECSCCTTSSCC--CCCSEE
T ss_pred CCCCC---EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc--hhhhcCCcceEEEeccCHhhCCC--CCCCEE
Confidence 34555 8999999999999988763 5788888765321111 00111212 334333 5545543 669999
Q ss_pred EeccccccccccHH-------HHHHHHHhhcCCC-eEEEEEcCCCC
Q 013393 113 HCSRCRIDWLQRDG-------ILLLELDRLLRPG-GYFVYSSPEAY 150 (444)
Q Consensus 113 ~~~~~~l~~~~d~~-------~~L~ei~rvLkPG-G~lvis~p~~~ 150 (444)
+|-.. +-.+++. +.|.-+.+.|++| |-|++-.-.+|
T Consensus 165 vcDig--eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 165 LCDIG--ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp EECCC--CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred EEECc--cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 99652 3223321 3566667889999 89988665544
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00058 Score=61.05 Aligned_cols=114 Identities=17% Similarity=0.252 Sum_probs=75.4
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccc--cccccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..|+|+.++.|.++..|..... +|+-++. +..+...- ..|+ +-+.+.=.+.++. +.+||+|.+.++|..
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF 109 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence 4899999999999998876532 5555554 23333322 2333 2222222233444 899999999998874
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEecc--------------HHHHHHHHHHHhhccceeE
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK--------------SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd~--------------~~~~~~~~~~~~~~~w~~~ 411 (444)
+.. -+...++-++-|+|+|||.+++-+. .-..+++++++.. |+..
T Consensus 110 ~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~ 168 (199)
T 2xvm_A 110 LEA--KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERV 168 (199)
T ss_dssp SCG--GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEE
T ss_pred CCH--HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEE
Confidence 431 2478899999999999999877431 1134677777777 7764
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0014 Score=57.92 Aligned_cols=141 Identities=14% Similarity=0.074 Sum_probs=84.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccc-cccccccccCCCCCCcccchhhcc-ccccccccC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAW-KVFSEIEER 366 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~-~~~~~~~~~ 366 (444)
..|+|+.++.|.++..|..... +|+-++.. ..+...-++.- +-+.+.-.+.++.-+.+||+|.++ .++.....
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~- 123 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE- 123 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH-
T ss_pred CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh-
Confidence 4899999999999999876532 55555542 33333333210 222222222233325799999998 56663321
Q ss_pred CCChhhhhhhhcccccCCcEEEEeccHH---HHHHHHHHHhhccceeEEeccccccCCCCC-CCceEEEEEec
Q 013393 367 GCSFEDLLIEMDRMLRPEGFVIIRDKSS---IINYIRKFITALKWDGWLSEVEPRIDALSS-SEERVLIAKKK 435 (444)
Q Consensus 367 ~c~~~~~~~e~drilrp~g~~~~rd~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~l~~~k~ 435 (444)
-....++-++-|+|+|||.+++-.... ..+++.+++....+++.......+..+... ..--+++++|+
T Consensus 124 -~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 124 -DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp -HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 135788999999999999999954322 367788888888888753322212222221 23345666663
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0015 Score=65.72 Aligned_cols=96 Identities=10% Similarity=-0.003 Sum_probs=58.4
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCc-EEEEecCccCCCCCCCccEEEeccccccccccH
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPS-TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~-~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
+||.++.+.|.++..|+...++.++=+-. ...+..+..+.++... .+...+..+ -+...||+|+... -......
T Consensus 41 ~~~~~~d~~gal~~~~~~~~~~~~~ds~~-~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~l--pk~~~~l 115 (375)
T 4dcm_A 41 PVLILNDAFGALSCALAEHKPYSIGDSYI-SELATRENLRLNGIDESSVKFLDSTA--DYPQQPGVVLIKV--PKTLALL 115 (375)
T ss_dssp CEEEECCSSSHHHHHTGGGCCEEEESCHH-HHHHHHHHHHHTTCCGGGSEEEETTS--CCCSSCSEEEEEC--CSCHHHH
T ss_pred CEEEECCCCCHHHHhhccCCceEEEhHHH-HHHHHHHHHHHcCCCccceEeccccc--ccccCCCEEEEEc--CCCHHHH
Confidence 69999999999998888777766532211 1223333444445432 122233222 2246799988532 2223344
Q ss_pred HHHHHHHHhhcCCCeEEEEEcC
Q 013393 126 GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 126 ~~~L~ei~rvLkPGG~lvis~p 147 (444)
...|.++...|+||+.+++...
T Consensus 116 ~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 116 EQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp HHHHHHHHTTCCTTSEEEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEEec
Confidence 5678889999999999987543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0019 Score=60.45 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=64.0
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC-CcEEEEe-cCccCCCCCCCccEE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVL-GTKRLPYPSRSFELA 112 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~-d~~~lp~~~~sFDlI 112 (444)
+++++ +|||+||++|.|+.+.+.. .|.|+|+-+....+.+ ..+..|- .+.|... |...++ ..++|.|
T Consensus 76 l~~g~---~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~--~~~s~gwn~v~fk~gvDv~~~~--~~~~Dtl 148 (267)
T 3p8z_A 76 VIPEG---RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV--PMSTYGWNIVKLMSGKDVFYLP--PEKCDTL 148 (267)
T ss_dssp SCCCE---EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC--CCCCTTTTSEEEECSCCGGGCC--CCCCSEE
T ss_pred CCCCC---EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc--hhhhcCcCceEEEeccceeecC--CccccEE
Confidence 34555 8999999999999988763 5788888775432111 1111222 3456655 655554 3669999
Q ss_pred EeccccccccccH----H---HHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 113 HCSRCRIDWLQRD----G---ILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 113 ~~~~~~l~~~~d~----~---~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+|-.. +-.+++ . +.|.-+.+.|++ |-|++-.-.++
T Consensus 149 lcDIg--eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py 190 (267)
T 3p8z_A 149 LCDIG--ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY 190 (267)
T ss_dssp EECCC--CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred EEecC--CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence 99652 222222 1 356666788998 78887655543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0032 Score=60.92 Aligned_cols=153 Identities=13% Similarity=0.042 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhhhccCCceeEEEecccccchhhhhcc--CCCceEEEeccccC-CCchhHHh----hccc---ccccccc
Q 013393 271 VRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK--DKDVWVMNVAPVRM-SARLKIIY----DRGL---IGTVHDW 340 (444)
Q Consensus 271 ~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~--~~~~wv~~~~~~~~-~~~l~~~~----~rg~---~~~~~~~ 340 (444)
++...|...+...+..+ ..|+|+.++.|.++..|. ..|-. +|+-++- +..+...- +.|+ +-+++.=
T Consensus 103 ~~~~~~~~~l~~~l~~~--~~vLDiGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 178 (305)
T 3ocj_A 103 ERHGHFRRALQRHLRPG--CVVASVPCGWMSELLALDYSACPGV--QLVGIDYDPEALDGATRLAAGHALAGQITLHRQD 178 (305)
T ss_dssp HHHHHHHHHHHHHCCTT--CEEEETTCTTCHHHHTSCCTTCTTC--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECC
T ss_pred HHHHHHHHHHHhhCCCC--CEEEEecCCCCHHHHHHHHhcCCCC--eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECc
Confidence 33333444443334333 479999999999999983 33332 4555553 34444333 3333 2233322
Q ss_pred ccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH---------------------------
Q 013393 341 CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS--------------------------- 393 (444)
Q Consensus 341 ~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~--------------------------- 393 (444)
.+.++ +|.+||+|.+.+++.... +.-....++-|+-|+|||||.+++.+-.
T Consensus 179 ~~~~~-~~~~fD~v~~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 256 (305)
T 3ocj_A 179 AWKLD-TREGYDLLTSNGLNIYEP-DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLV 256 (305)
T ss_dssp GGGCC-CCSCEEEEECCSSGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHH
T ss_pred hhcCC-ccCCeEEEEECChhhhcC-CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhH
Confidence 23333 359999999998887332 2122334799999999999999997711
Q ss_pred ------------HHHHHHHHHHhhccceeEEeccccccCCCCCCCceEEEEEec
Q 013393 394 ------------SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 394 ------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
...++++++++.-.++.... +... .+.-..++++|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~--~~~~----~~~~~~v~a~Kp 304 (305)
T 3ocj_A 257 FTRLIQPRWNALRTHAQTRAQLEEAGFTDLRF--EDDR----ARLFPTVIARKP 304 (305)
T ss_dssp HHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEE--ECCT----TSSSCEEEEECC
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHCCCEEEEE--Eccc----CceeeEEEEecC
Confidence 24778889999888987422 1111 123568888884
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0024 Score=58.81 Aligned_cols=117 Identities=10% Similarity=0.137 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc-cccccccccCC
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESF 344 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~ 344 (444)
..|.+..+.+...+...+ ..-..|+|+.++.|.++..|...-. +|+-++. +..+...-++.- +-+.+.=.+.+
T Consensus 21 ~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~ 95 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDF 95 (239)
T ss_dssp CCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTC
T ss_pred hhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHc
Confidence 456666665555555434 3346899999999999998875421 4555554 344444444310 22222222334
Q ss_pred CCCCcccchhhc-cccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 345 STYPRTYDLLHA-WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 345 ~~y~~~~dl~h~-~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+. +.+||+|.+ .+++..+. ..-+...+|-++-|+|+|||.+++.
T Consensus 96 ~~-~~~~D~v~~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 96 RL-GRKFSAVVSMFSSVGYLK-TTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp CC-SSCEEEEEECTTGGGGCC-SHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred cc-CCCCcEEEEcCchHhhcC-CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 44 789999994 44666332 1124678999999999999999996
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0031 Score=58.11 Aligned_cols=94 Identities=14% Similarity=0.228 Sum_probs=63.0
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc-cccccccccCCCCCCcccchhhccc-cccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWK-VFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~-~~~~~~~~~~~~~y~~~~dl~h~~~-~~~~ 362 (444)
..|+|+.++.|.++..|... .+|+-++- +..+...-++ |. +-..+.=.+.++ .|.+||+|-+.. ++..
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-LPEPVDAITILCDSLNY 109 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC-CSSCEEEEEECTTGGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC-CCCCcCEEEEeCCchhh
Confidence 68999999999999999876 36666664 3444443332 21 222222122333 468999999875 6663
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEE
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+. ..-+...+|-++-|+|+|||.+++
T Consensus 110 ~~-~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 110 LQ-TEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp CC-SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 32 223467889999999999999998
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00057 Score=66.02 Aligned_cols=97 Identities=10% Similarity=0.180 Sum_probs=67.4
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhh----cccc---ccc-cccccCCCCCCcccchhhcc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGLI---GTV-HDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~----rg~~---~~~-~~~~~~~~~y~~~~dl~h~~ 357 (444)
.-..|+|+.+|.|+++..|... + .+|+-++- +..+...-+ .|+- -+. .|.. .+ +.+||+|.+.
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~---~~~fD~v~~~ 144 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-EF---DEPVDRIVSL 144 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG-GC---CCCCSEEEEE
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH-Hc---CCCccEEEEc
Confidence 3457999999999999998765 5 25555553 355554433 3542 122 2332 33 8999999999
Q ss_pred cccccccc-----CCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEE-----RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~-----~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++|..... ..-....++-|+-|+|+|||.++|.+
T Consensus 145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99875422 12346789999999999999999964
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0014 Score=59.61 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=71.6
Q ss_pred hccCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----cccccccccccCCCCCCcccchhhcc
Q 013393 283 VAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 283 ~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g~~~~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
.+....-..|+|+.++.|.++..|...- .+|+-++-. ..+...-++ +-+-+++.=.+.++ -+.+||+|.+.
T Consensus 46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 121 (216)
T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVA 121 (216)
T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEE
T ss_pred HcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEc
Confidence 3556667899999999999999998752 367666643 444444333 22333333334444 46899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++|..+. +.-.+..+|-++-|+|+|||.+++-+
T Consensus 122 ~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 122 EVLYYLE-DMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp SCGGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cHHHhCC-CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9887443 11234577999999999999999943
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0085 Score=63.02 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh-----------------CCceEEEcCcccchHHHHHH
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQF 84 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~-----------------~~V~gvdis~~dis~a~i~~ 84 (444)
...++.+.+++.. .+ ..+|+|-.||+|.|.....+ ..+.|.|+.+....-+..+.
T Consensus 203 ~~Vv~lmv~l~~p-----~~---~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 203 RPVVRFMVEVMDP-----QL---GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp HHHHHHHHHHHCC-----CT---TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-----CC---CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 3456666777642 12 23799999999998765532 24778888776655554444
Q ss_pred HHHcCCCcEEEEecCccCCC----CCCCccEEEeccccc-cc-------------ccc-HHHHHHHHHhhcC-------C
Q 013393 85 ALERGIPSTLGVLGTKRLPY----PSRSFELAHCSRCRI-DW-------------LQR-DGILLLELDRLLR-------P 138 (444)
Q Consensus 85 a~e~~~~~~~~~~d~~~lp~----~~~sFDlI~~~~~~l-~~-------------~~d-~~~~L~ei~rvLk-------P 138 (444)
....-....+...|....|. +...||+|+++--.- .+ ..+ .-.++..+.+.|| |
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~ 354 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN 354 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS
T ss_pred HhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC
Confidence 43322334566666554442 235799999974110 00 011 1246777888887 7
Q ss_pred CeEEEEEcCC
Q 013393 139 GGYFVYSSPE 148 (444)
Q Consensus 139 GG~lvis~p~ 148 (444)
||++.+..|.
T Consensus 355 gGr~avVlP~ 364 (530)
T 3ufb_A 355 GGRAAVVVPN 364 (530)
T ss_dssp CCEEEEEEEH
T ss_pred CceEEEEecc
Confidence 9999998775
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0023 Score=58.95 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=63.6
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc--ccccccccccCCCCCCcccchhhccccccccccCC
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG--LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 367 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg--~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~ 367 (444)
.|+|+.++.|.++..|.+.-. +|+=++- +..+...-++- -+-..+.-.+.+ ..+.+||+|++.+++.++.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~--- 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID--- 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS---
T ss_pred cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc---
Confidence 599999999999999976522 4554553 24444433331 122222222233 2468999999999988543
Q ss_pred CChhhhhhhhc-ccccCCcEEEEec
Q 013393 368 CSFEDLLIEMD-RMLRPEGFVIIRD 391 (444)
Q Consensus 368 c~~~~~~~e~d-rilrp~g~~~~rd 391 (444)
+...+|-|+- |+|+|||.+++.+
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 3688999999 9999999999965
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0011 Score=60.28 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=80.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc-cccccccccccCCCCCCcccchhhccccccccccCC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 367 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r-g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~ 367 (444)
..|+|+.++.|.++..|.+... +|+-++- +..+...-++ ++--...|. +.++ .+.+||+|.+.+++..+. .
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~--~ 117 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVP--R 117 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEECSCGGGSC--H
T ss_pred CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEecCchhhcC--H
Confidence 4799999999999999976632 5666664 3455555444 332222332 3344 578999999999887443 1
Q ss_pred CChhhhhhhhcccccCCcEEEEeccH---------------HHHHHHHHHHhhcc-ceeE
Q 013393 368 CSFEDLLIEMDRMLRPEGFVIIRDKS---------------SIINYIRKFITALK-WDGW 411 (444)
Q Consensus 368 c~~~~~~~e~drilrp~g~~~~rd~~---------------~~~~~~~~~~~~~~-w~~~ 411 (444)
-+...+|-|+-|+|+|||.+++.... -..+++++++..-. ++..
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~ 177 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASV 177 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEE
Confidence 24678999999999999999995221 14677888888877 7764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00047 Score=69.92 Aligned_cols=140 Identities=9% Similarity=0.110 Sum_probs=94.9
Q ss_pred hHhhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcccccccc----c
Q 013393 265 DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVH----D 339 (444)
Q Consensus 265 ~~~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~----~ 339 (444)
....|.+....+...+...+.-..-..|+|+.++.|.++..|.+... +|+=++- ++.+...-++|+-.... +
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~ 160 (416)
T 4e2x_A 84 GSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKA 160 (416)
T ss_dssp GCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechh
Confidence 34556666666655554445444456899999999999999987643 5666664 36677777776422211 1
Q ss_pred cccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH--------------------HHHHHH
Q 013393 340 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS--------------------SIINYI 399 (444)
Q Consensus 340 ~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~--------------------~~~~~~ 399 (444)
-.+.++.-+.+||+|.+.++|.++. +...+|-|+-|+|+|||.+++.... -..+.+
T Consensus 161 ~~~~l~~~~~~fD~I~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 236 (416)
T 4e2x_A 161 TADDVRRTEGPANVIYAANTLCHIP----YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSV 236 (416)
T ss_dssp HHHHHHHHHCCEEEEEEESCGGGCT----THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHH
T ss_pred hHhhcccCCCCEEEEEECChHHhcC----CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHH
Confidence 1122222248999999999998653 5899999999999999999996421 112567
Q ss_pred HHHHhhccceeE
Q 013393 400 RKFITALKWDGW 411 (444)
Q Consensus 400 ~~~~~~~~w~~~ 411 (444)
+.++..-.+++.
T Consensus 237 ~~ll~~aGf~~~ 248 (416)
T 4e2x_A 237 QGMAQRCGFELV 248 (416)
T ss_dssp HHHHHHTTEEEE
T ss_pred HHHHHHcCCEEE
Confidence 788887777763
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0056 Score=56.44 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=87.3
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc---cccc-cccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IGTV-HDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~---~~~~-~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.++.|.++..|..... +|+=++- +..+...-++ |+ +-++ .|..+ ++ .+.+||+|.+.++|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhh
Confidence 3899999999999999976432 4555553 3444433332 22 1122 23333 22 34689999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEeccH-----------HHHHHHHHHHhhccceeEEeccccccCCCCCCCceE
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERV 429 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~-----------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 429 (444)
..+. .-....++-++-|+|+|||.+++-+.. -..+++++++..-.|+..........-+...+.|++
T Consensus 143 ~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~g~e~~ 220 (235)
T 3lcc_A 143 CAIE--PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKL 220 (235)
T ss_dssp TTSC--GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTTCCTTTTTSCEE
T ss_pred hcCC--HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCCccccccCHHHH
Confidence 7442 235788999999999999999984321 135788899998889875333223333333455555
Q ss_pred EEEE
Q 013393 430 LIAK 433 (444)
Q Consensus 430 l~~~ 433 (444)
-..+
T Consensus 221 ~~~~ 224 (235)
T 3lcc_A 221 GRWK 224 (235)
T ss_dssp EEEE
T ss_pred hhhh
Confidence 4443
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0061 Score=54.91 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=67.5
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc---cccccccccCCCCCCcccchhhccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~---~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
.|+|+.++.|.++..|...+- .+|+-++- +..+...-++ |+ +-.++.=.+.++.-+.+||+|.+.+++..
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 899999999999999977533 35666664 3444443333 43 22333333444444589999999998874
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. -+...+|-|+-|+|+|||.+++.+
T Consensus 124 ~----~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 124 W----EDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp C----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c----cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 4 247889999999999999999964
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=63.02 Aligned_cols=99 Identities=14% Similarity=0.280 Sum_probs=66.7
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc----cc--cccccccccCCCCCCcccchhhccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r----g~--~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
..-..|+|+.++.|.++..|... |. .+|+-++. +..+...-++ |+ +-....=.+.++.-+.+||+|++..
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 113 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPD--AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF 113 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence 34458999999999999888653 21 13444443 3444433322 43 2223322334454468999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++..+. +...+|-++-|+|+|||++++.+
T Consensus 114 ~l~~~~----~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 114 VLEHLQ----SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp CGGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 988442 36789999999999999999965
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0052 Score=59.66 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=87.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc--cccc---c-cccc-ccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR--GLIG---T-VHDW-CESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r--g~~~---~-~~~~-~~~~~~y~~~~dl~h~~~~~~ 361 (444)
+.++|+.++-|+|+..|...+. -.|+-+|- ++.|..-..+ .++. + .... -+.++ ..+||++-++-.|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~--~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFT--EGLPSFASIDVSFI 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCT--TCCCSEEEECCSSS
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCC--CCCCCEEEEEeeHh
Confidence 5799999999999988865432 24555663 4666552221 1110 0 1111 12233 23599999988776
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe---------c-------------cHHHHHHHHHHHhhccceeEEecccccc
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR---------D-------------KSSIINYIRKFITALKWDGWLSEVEPRI 419 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r---------d-------------~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 419 (444)
++..+|-|+-|+|+|||.+++= + ....++++...+....|.+...+..+-.
T Consensus 163 -------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~ 235 (291)
T 3hp7_A 163 -------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ 235 (291)
T ss_dssp -------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred -------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 2588999999999999999772 1 1247888999999999998655444444
Q ss_pred CCCCCCCceEEEEEec
Q 013393 420 DALSSSEERVLIAKKK 435 (444)
Q Consensus 420 ~~~~~~~~~~l~~~k~ 435 (444)
|+. .+.|=++.++|.
T Consensus 236 g~~-gn~e~l~~~~~~ 250 (291)
T 3hp7_A 236 GGH-GNIEFLAHLEKT 250 (291)
T ss_dssp CGG-GCCCEEEEEEEC
T ss_pred CCC-cCHHHHHHhhhc
Confidence 432 345777777763
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=64.62 Aligned_cols=99 Identities=10% Similarity=0.192 Sum_probs=66.6
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc----cccccccccccCCCCCCcccchhhcccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r----g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
.-..|+|+.++.|+++..|.+. .. +|+-++- +..+...-++ |+-....-.+..+...|.+||+|.+.++|.
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~ 166 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFE 166 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred CcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHH
Confidence 3357999999999999888754 32 5555554 3455544433 542211112222233468999999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.... -+...++-|+-|+|+|||.+++.+
T Consensus 167 ~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 167 HFGH--ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp GTCG--GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCH--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4421 247889999999999999999854
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0007 Score=62.96 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=65.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcccccccc-cccc---CCCCCCcccchhhccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVH-DWCE---SFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~-~~~~---~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
..|+|+.++.|.++..|.+... +|+-++- +..+...-++ +-..+ |-.+ +|+ +.+||+|.+.+++..+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~--~~~fD~i~~~~~l~~~~ 115 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLP--DKYLDGVMISHFVEHLD 115 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSC--TTCBSEEEEESCGGGSC
T ss_pred CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcC--CCCeeEEEECCchhhCC
Confidence 5799999999999998876432 4455553 3555555555 22222 2222 333 48999999999998553
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEec
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. -++..+|-|+-|+|+|||.+++..
T Consensus 116 ~--~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 116 P--ERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp G--GGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred c--HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 2 247899999999999999999953
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0015 Score=61.78 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=78.8
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccc---cccccccccCCCCCCcccchhhccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL---IGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
-..|+|+.+|.|.++..|.+.+- .+|+-++- +..+...-+ .|+ +-+.+.=.+.++.-+.+||+|.+.+++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI 124 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred CCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence 45899999999999999987643 14444443 344444333 343 223333334555446899999999998
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEeccH---------------------HHHHHHHHHHhhcccee
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------------SIINYIRKFITALKWDG 410 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~---------------------~~~~~~~~~~~~~~w~~ 410 (444)
... +...++-++-|+|+|||.+++.+.. ....++.+++..-.++.
T Consensus 125 ~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 190 (267)
T 3kkz_A 125 YNI-----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLP 190 (267)
T ss_dssp GGT-----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEE
T ss_pred eec-----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEE
Confidence 743 4789999999999999999996521 12456677777777775
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00092 Score=63.70 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=64.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 368 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c 368 (444)
..|+|..+|-|.++..|.+.- -+|+-+|-. ..|...-.+.=|-..+.=.|.++.=+.+||+|.+...|. . .
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h-~----~ 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMH-W----F 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCT-T----C
T ss_pred CCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehh-H----h
Confidence 369999999999999998653 245555532 333322222223334444566666679999999988875 2 3
Q ss_pred ChhhhhhhhcccccCCcEEEE
Q 013393 369 SFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 369 ~~~~~~~e~drilrp~g~~~~ 389 (444)
+....+-|+-|+|||||.+++
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEE
Confidence 578899999999999999877
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0023 Score=60.12 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=66.4
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccc--cccccccccCCCCCCcccchhhcccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..-..|+|+.++-|.++..|...-- +|+-++. +.-+...-+ +|+ +-....=.+.++.-+.+||+|.+..+
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA 112 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh
Confidence 3456899999999999998876421 5666664 344444332 343 22222122334433589999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+-.+. +...+|-|+-|+|||||.+++.|
T Consensus 113 l~~~~----d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 113 AHHFP----NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhcC----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 87432 47899999999999999999964
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.003 Score=58.64 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=78.6
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc------ccccccccccCCCCCCcccchhhccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG------LIGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg------~~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
.-..|+|+.++.|.++..|...- ..+|+-++- +..+...-++. -+-+++.=.+.++.-+.+||+|.+..++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 35689999999999999887653 124555553 23343332221 0112222233445445689999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEeccH---------------HHHHHHHHHHhhccceeE
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------SIINYIRKFITALKWDGW 411 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~---------------~~~~~~~~~~~~~~w~~~ 411 (444)
..+... .+..+|-|+-|+|+|||.+++.|.. ...+++++++....++..
T Consensus 157 ~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 157 GHLTDQ--HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hhCCHH--HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEE
Confidence 744321 2568999999999999999996531 136778888888888764
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0022 Score=61.45 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=66.6
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh----hccc---cccccccccCCCCCCcccchhhcccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL---IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~----~rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
-..|+|+.++.|.++..|... +. +|+-++- +..+...- +.|+ +-+.+.-.+.++.-+.+||+|.+.++
T Consensus 83 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 83 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 358999999999999988764 32 5666654 34444333 2344 22222222334433589999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.++. +...+|-|+-|+|||||.+++.+
T Consensus 160 l~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 160 FLHSP----DKLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 88543 27899999999999999999975
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0024 Score=60.30 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=65.0
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccc---cccccccccCCCCCCcccchhhcccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL---IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
.-..|+|+.++.|.++..|....- .+|+-++- +..+...-+ .|+ +-+.+.--+.++.-+.+||+|.+.++
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES 138 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence 345899999999999988864311 24555553 244443332 354 22222222233433479999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
|.... +...+|-|+-|+|+|||.+++.+
T Consensus 139 l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 139 LHHMP----DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp TTTSS----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhCC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 88442 36889999999999999999965
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0029 Score=56.87 Aligned_cols=118 Identities=12% Similarity=0.155 Sum_probs=82.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc-cccccccccCCCCCCcccchhhccccccccccCC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 367 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~ 367 (444)
..|+|+.++.|.++..|..... +|+-++- +..+...-++.- +-+.+.=.+.++.-+.+||+|.+.++|..+. .
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~ 117 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG--P 117 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC--T
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC--H
Confidence 4799999999999999976532 4555553 344555444421 1122222233444458999999999887543 2
Q ss_pred CChhhhhhhhcccccCCcEEEEeccH----------------HHHHHHHHHHhhccceeEE
Q 013393 368 CSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDGWL 412 (444)
Q Consensus 368 c~~~~~~~e~drilrp~g~~~~rd~~----------------~~~~~~~~~~~~~~w~~~~ 412 (444)
-+...+|-++-|+|+|||.+++.+.. ...+++++++....|++..
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 178 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTS 178 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEE
Confidence 36889999999999999999996521 2368889999999999854
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0075 Score=60.75 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=62.8
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH----hhccc-cccccccccCCCCCCcccchhhccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
-..|+|+.++.|.++..|..... +|+=++. +..+... -..|+ +-+++.=++.+..=+.+||+|-++..|..
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 34899999999999998876532 5555553 2333322 12232 22333333333221379999999888763
Q ss_pred ccc-CCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEE-RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~-~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
... ..-....++-++-|+|+|||.++|--
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 111 11235678889999999999999853
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0049 Score=53.66 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=85.2
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc--cccccccccccCCCCCCcccchhhccccccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r--g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
.-..|+|+.++.|.++..|.+.- -+|+-++- +..+...-++ .+--...| .+.-+.+||++.+..++....
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~d----~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSDP----KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESSG----GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeCC----CCCCCCceEEEEEccchhccc
Confidence 34689999999999999998764 16666664 3555555444 11111222 333357999999999988442
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEeccHH-------------HHHHHHHHHhhccceeEEeccccccCCCCCCCceEEE
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDKSS-------------IINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLI 431 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 431 (444)
+...++-|+-|+|+|||.+++.+-.. ..++++++++ .|+.... .+ .. ...-.|+
T Consensus 90 ----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~-~~--~~----~~~~~l~ 156 (170)
T 3i9f_A 90 ----DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKR-FN--PT----PYHFGLV 156 (170)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEE-EC--SS----TTEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEc-cC--CC----CceEEEE
Confidence 47899999999999999999964321 2456777777 7775321 11 11 1356777
Q ss_pred EEecc
Q 013393 432 AKKKL 436 (444)
Q Consensus 432 ~~k~~ 436 (444)
+.|+=
T Consensus 157 ~~~~~ 161 (170)
T 3i9f_A 157 LKRKT 161 (170)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 77653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0033 Score=58.75 Aligned_cols=96 Identities=14% Similarity=0.208 Sum_probs=65.5
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc--c-c--cccccccccCCCCCCcccchhhcccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR--G-L--IGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r--g-~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
.-..|+|+.++.|.++..|.+.. .+|+-++- +..+...-++ + . +-..+.=.+.++.-+.+||+|++..+|.
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 34689999999999999998763 35555553 3444444333 1 1 1122222244453357999999998887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
... +...++-|+-|+|+|||.+++.
T Consensus 116 ~~~----~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVP----DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCT----THHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC----CHHHHHHHHHHHCCCCcEEEEE
Confidence 432 4788999999999999999884
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0026 Score=60.06 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=66.1
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccccccccccccCCCCCCcccchhhcccccccccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..-..|+|+.++.|.++..|.+... +|+=++-. ..+...-.+.-+-..+.=++.++.-+.+||+||+.+++..+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-- 107 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHF-- 107 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGC--
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhc--
Confidence 3446899999999999999987432 44444432 22222222222333333445566556899999999988744
Q ss_pred CCCChhhhhhhhcccccCCcEEEEec
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
-+...++-|+-|+|| ||++++-+
T Consensus 108 --~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 108 --SHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp --SSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred --cCHHHHHHHHHHHhC-CcEEEEEE
Confidence 357899999999999 99877743
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0076 Score=54.30 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=77.0
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccccccccccccCCCCCCcccchhhccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
..|+|+.++.|.++..|...+. .+|+-++. +..+...-+ .|+-.+---.+..++..+.+||+|.++..+..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~-- 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI-- 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH--
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH--
Confidence 4899999999999999876653 24555554 344443333 24422222222233345699999999876652
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHhhccceeE
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~~~~w~~~ 411 (444)
+..++-++-|+|+|||.+++.+ .....+.+.+++....++..
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQID 180 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceE
Confidence 5788999999999999999863 34446777788887777764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0028 Score=58.95 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=68.3
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccc--cccccccccCCCCCCcccchhhcccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL--IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..-..|+|+.++.|.++.+|...-. +|+-++- +..+...- ++|+ +-+.+.-.+.++.-+.+||+|.+..+
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA 96 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc
Confidence 3446899999999999998876432 5666664 34444332 2343 23333334556654589999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+..+. +...+|-|+-|+|+|||.+++-|
T Consensus 97 l~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 97 AHHFS----DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87432 47899999999999999999964
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0018 Score=60.51 Aligned_cols=95 Identities=14% Similarity=0.196 Sum_probs=63.7
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc---cccccccccCCCCCCcccchhhcccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL---IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
-..|+|+.++.|.++..|... .. +|+-++- +..+... -+.|+ +-+.+.=.+.++. +.+||+|.+.++
T Consensus 37 ~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 37 GTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGA 112 (256)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred CCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCC
Confidence 348999999999999888643 21 4444443 3344433 23354 2222222233444 799999999887
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+-... +...+|-|+-|+|||||.+++.+
T Consensus 113 ~~~~~----~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 113 TWIAG----GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp GGGTS----SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hHhcC----CHHHHHHHHHHHcCCCeEEEEec
Confidence 76332 47889999999999999999965
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.001 Score=62.12 Aligned_cols=113 Identities=16% Similarity=0.258 Sum_probs=77.8
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc---cccccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.++.|.++..|... +. +|+-++- +..+... -+.|+ +-+.+.=.+.++.-+.+||+|++.+++
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 124 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI 124 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCS
T ss_pred CeEEEeCCCCCHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChH
Confidence 48999999999999888654 32 5555554 3444443 23344 222332235555445899999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEeccH---------------------HHHHHHHHHHhhcccee
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------------SIINYIRKFITALKWDG 410 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~---------------------~~~~~~~~~~~~~~w~~ 410 (444)
... +...+|-++-|+|||||.+++.+.. ....++.+++..-.++.
T Consensus 125 ~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 190 (257)
T 3f4k_A 125 YNI-----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP 190 (257)
T ss_dssp CCC-----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEE
T ss_pred hhc-----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeE
Confidence 743 5789999999999999999997621 12456677777777765
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.011 Score=51.53 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=77.3
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhh----ccc---cccccccccCCCCCCcccchhhcc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL---IGTVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~----rg~---~~~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..-..|+|+.++.|.++..+... |. .+|+-++- +..+...-+ .|+ +-+..|..+.|+..+.+||+|.++
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence 34468999999999999988654 32 24444443 234444332 243 222334556666655899999988
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhccceeE
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~~ 411 (444)
+.+.. ..++-++-|+|+|||.+++-+. .+-...+..+++...++..
T Consensus 102 ~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 102 GGLTA--------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp C-TTC--------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred CcccH--------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 77652 6789999999999999999653 4566677777777766654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0025 Score=61.04 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=66.5
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhh----ccc-cccccccccCCCCCCcccchhhcccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL-IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~----rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..-.+|+|+.++.|.++..|.+. |- --+|+-++- +..+...-+ .|+ +-+.+.=++.++ +|.+||+||+..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~ 98 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPE-GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICHAF 98 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCT-TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-cCCCeeEEEECCh
Confidence 44568999999999999999764 21 013333442 233332222 221 222333333444 3789999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
+.... +...++-++-|+|+|||++++.+..
T Consensus 99 l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMT----TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCS----SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCC----CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 88442 4689999999999999999987654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0057 Score=55.59 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=78.1
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc--cccccccccCCCCCCcccchhhccccccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
.-..|+|+.++.|.++..|.... .+|+-++- +..+...-++-- +-+.+.=.+.++. |.+||+|.+.++|..+.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEV-PTSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCC-CSCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCC-CCCeEEEEECcchhcCC
Confidence 34589999999999999997653 25555554 344444444311 2222222233332 38999999999888443
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEeccH----H---------------------------HHHHHHHHHhhccceeEE
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS----S---------------------------IINYIRKFITALKWDGWL 412 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~~----~---------------------------~~~~~~~~~~~~~w~~~~ 412 (444)
.. ....+|-|+-|+|+|||.+++.+.. . ..++++++++.-.+++..
T Consensus 121 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 121 DD--EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp HH--HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred hH--HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence 21 1234899999999999999997511 1 236778888888888753
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0038 Score=56.78 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=66.7
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccccccc-cccccC-CCCCCcccchhhcccccccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTV-HDWCES-FSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~~~~~-~~~~~~-~~~y~~~~dl~h~~~~~~~~ 363 (444)
..-..|+|+.++.|.++..|...+ .+|+-++-. ..+...-++. .-+. .|..+. .+.-+.+||+|.+.+++..+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~ 106 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHL 106 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEEEEESCGGGS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEEEECChhhhc
Confidence 344689999999999999998875 356666643 4444444332 1122 233321 22224899999999988744
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. +...++-++-|+|+|||.+++..
T Consensus 107 ~----~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 107 F----DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp S----CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred C----CHHHHHHHHHHHcCCCCEEEEEe
Confidence 3 36799999999999999999953
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.004 Score=54.92 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=73.4
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc----c-ccccccccCCCCCCcccchhhcc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL----I-GTVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~----~-~~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
.-..|+|+.++.|.++..+... .-+|+-++. +..+...-++ |+ + -+..|..+.++ +.+||+|.++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 3458999999999999888765 235555553 2344433322 33 2 23345555444 6799999998
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEeccH-HHHHHHHHHHhhcccee
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 410 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~-~~~~~~~~~~~~~~w~~ 410 (444)
..|.... -....++-++-|+|+|||.+++-+.. ....++.+.++..-+++
T Consensus 127 ~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~ 177 (194)
T 1dus_A 127 PPIRAGK---EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNV 177 (194)
T ss_dssp CCSTTCH---HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCC
T ss_pred CCcccch---hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcce
Confidence 8765211 23678899999999999999886543 33444555555553344
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0039 Score=59.25 Aligned_cols=95 Identities=8% Similarity=0.112 Sum_probs=65.1
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc-ccccccccccCCCCCCcccchhhcccccccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg-~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
.-..|+|+.++.|.++..|.+... +|+-++- +..+...-++. =+-..+.=.+.++ ++.+||+|++..++..+.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~- 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLHWVK- 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGGGCS-
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhhhCc-
Confidence 345899999999999999876322 4555553 34444443331 1222222234455 489999999999887432
Q ss_pred CCCChhhhhhhhcccccCCcEEEEe
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+...+|-|+-|+|||||.+++.
T Consensus 132 ---d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 132 ---EPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEE
Confidence 4788999999999999999995
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0037 Score=56.78 Aligned_cols=134 Identities=15% Similarity=0.116 Sum_probs=85.7
Q ss_pred eeEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhhc----cc--cccccccccCCCCCCcccchhhcccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~r----g~--~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
-..|+|+.++.|.++.+|... |-. .|+-++. +..+...-++ |+ +-+.+.=.+.++.-+.+||+|.+.++
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence 348999999999999988642 211 3444543 2344433222 32 22222222334444578999999999
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEecc-------------HHHHHHHHHHHhhccceeEEeccccccCCCCCCC
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-------------SSIINYIRKFITALKWDGWLSEVEPRIDALSSSE 426 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~-------------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 426 (444)
+..+. +...+|-|+-|+|+|||.+++-+- ....+++++++..-.++.... .+ .. ..
T Consensus 116 l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~-~~--~~----~~ 184 (219)
T 3dh0_A 116 FHELS----EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV-VE--VG----KY 184 (219)
T ss_dssp GGGCS----SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE-EE--ET----TT
T ss_pred hhhcC----CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE-Ee--eC----Cc
Confidence 88442 478899999999999999999652 123578888888888886322 11 11 13
Q ss_pred ceEEEEEec
Q 013393 427 ERVLIAKKK 435 (444)
Q Consensus 427 ~~~l~~~k~ 435 (444)
..+++++|+
T Consensus 185 ~~~~~~~k~ 193 (219)
T 3dh0_A 185 CFGVYAMIV 193 (219)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEec
Confidence 567777775
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0065 Score=55.49 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=76.4
Q ss_pred eeEEEecccccchhhhhccCCCceEEEecccc-CCCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCC
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 367 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~-~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~ 367 (444)
-..|+|+.++.|.++..|... +-++ ++..+...-++++ -++..-.+.++.-+.+||+|.+.+++..+.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD--- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCC-EEEEcccccCCCCCCCeeEEEEcchHhhcc---
Confidence 348999999999999999876 2223 2344555555543 222222334454357999999999887442
Q ss_pred CChhhhhhhhcccccCCcEEEEeccH------------------------HHHHHHHHHHhhccceeE
Q 013393 368 CSFEDLLIEMDRMLRPEGFVIIRDKS------------------------SIINYIRKFITALKWDGW 411 (444)
Q Consensus 368 c~~~~~~~e~drilrp~g~~~~rd~~------------------------~~~~~~~~~~~~~~w~~~ 411 (444)
+...+|-++-|+|+|||.+++.+.. -..+++++++....++..
T Consensus 117 -~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 117 -DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 4688999999999999999995321 134677888887777764
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0019 Score=60.35 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=69.3
Q ss_pred cCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc----ccc-cccccccCCCCCCcccchhhccc
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIG-TVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg----~~~-~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
.-..-..|+|+.++.|.++..|.+.- -.+|+-++- +..+...-++. -+- +..|..+ ++.-+.+||+|++.+
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 128 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRD 128 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHH
Confidence 33344589999999999999887641 125555553 34555554443 122 2234333 344468999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++..+. .-+...+|-|+-|+|||||.+++.+
T Consensus 129 ~l~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 129 AILALS--LENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp CGGGSC--HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcC--hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 888542 1247889999999999999999975
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0042 Score=57.26 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=79.8
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc---cccccccccCCCCCCcccchhhcccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..|+|+.++.|.++..|..... +|+-++- +..+...-+++. +-..+.-.+.++.-+.+||+|.+.++|.+..
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 130 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE- 130 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS-
T ss_pred CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc-
Confidence 3899999999999999987632 5555553 355555555532 2222222334454468999999999988542
Q ss_pred CCCChhhhhhhhcccccCCcEEEEeccH----------------------HHHHHHHHHHhhccceeE
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------------SIINYIRKFITALKWDGW 411 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd~~----------------------~~~~~~~~~~~~~~w~~~ 411 (444)
+...+|-++-|+|+|||.++|.+.. ....+++.++..-.+++.
T Consensus 131 ---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 195 (242)
T 3l8d_A 131 ---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV 195 (242)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred ---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence 4678999999999999999996511 123467777887777764
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0035 Score=58.47 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=70.2
Q ss_pred hhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc---cccccccccCCCCCCcccchhhcc
Q 013393 282 TVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 282 ~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~---~~~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..+....-..|+|+.++.|.++..|.....- +|+-++- +..+...-++.- +-....=.+.++.-+.+||+|.+.
T Consensus 38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 115 (253)
T 3g5l_A 38 KMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSS 115 (253)
T ss_dssp TTCCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEE
T ss_pred HhhhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEc
Confidence 3344445568999999999999998765321 5555554 344444444421 122222223455445899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
++|..+ -+...+|-|+-|+|+|||.+++.
T Consensus 116 ~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 116 LALHYI----ASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp SCGGGC----SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhh----hhHHHHHHHHHHHcCCCcEEEEE
Confidence 988854 24789999999999999999996
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0042 Score=56.19 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=65.0
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhcc-ccccccccccCCCCCCcccchhhcccccccccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg-~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
.-..|+|+.++.|.++..| .. -+|+-++-. ..+...-++. -+-+.+.-.+.++.-+.+||+|.+.+++....
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PY----PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CC----SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CCCeEEEECCCCCHhHHhC-CC----CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence 3458999999999999998 32 145555532 4444444441 12223333344554457999999999887442
Q ss_pred CCCChhhhhhhhcccccCCcEEEEec
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+...+|-|+-|+|+|||.+++-+
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 ---DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 57899999999999999999964
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.00086 Score=64.19 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=66.3
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----ccccc-------ccccccCCC---CCCcccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLIGT-------VHDWCESFS---TYPRTYD 352 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~~~~-------~~~~~~~~~---~y~~~~d 352 (444)
.-..|+|+.+|.|.++..|.+... +|+-++- +..+...-++ +.-+. --|+.+ ++ .-+.+||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~fD 132 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-LDKDVPAGDGFD 132 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-HHHHSCCTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh-CccccccCCCeE
Confidence 346899999999999999977643 6777775 3555554332 21111 112211 11 2358999
Q ss_pred hhhcc-cccccccc---CCCChhhhhhhhcccccCCcEEEEec
Q 013393 353 LLHAW-KVFSEIEE---RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 353 l~h~~-~~~~~~~~---~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+|++. .+|.++.. ..-....+|-++-|+|+|||++++..
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99998 67764322 12337889999999999999999864
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0065 Score=54.80 Aligned_cols=144 Identities=12% Similarity=0.037 Sum_probs=90.2
Q ss_pred CCChhHHHhhHhhHHHHHHHH-HHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhh--
Q 013393 256 GVTTEEFHEDIGIWQVRVVDY-WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD-- 330 (444)
Q Consensus 256 g~~~~~f~~~~~~w~~~v~~y-~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~-- 330 (444)
|+..+.|.++....++++... +..+. +. .-..|+|+.++-|.++..|... |. -+|+-++. +..+...-+
T Consensus 11 g~~d~~f~~~g~~~~~~i~~~~l~~l~--~~--~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~ 84 (204)
T 3e05_A 11 IDDDEFATAKKLITKQEVRAVTLSKLR--LQ--DDLVMWDIGAGSASVSIEASNLMPN--GRIFALERNPQYLGFIRDNL 84 (204)
T ss_dssp CCGGGSCCCTTTSCCHHHHHHHHHHTT--CC--TTCEEEEETCTTCHHHHHHHHHCTT--SEEEEEECCHHHHHHHHHHH
T ss_pred CCCcHHhccCCcCChHHHHHHHHHHcC--CC--CCCEEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHH
Confidence 444455555545556666433 33332 33 3358999999999999888643 21 13444443 344443332
Q ss_pred --ccc--ccc-ccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHh
Q 013393 331 --RGL--IGT-VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFIT 404 (444)
Q Consensus 331 --rg~--~~~-~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~ 404 (444)
.|+ +-+ ..|..+.++.. .+||++-++..+. ....++-++-|+|+|||.+++-+ ..+..+++.++++
T Consensus 85 ~~~~~~~v~~~~~d~~~~~~~~-~~~D~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~ 156 (204)
T 3e05_A 85 KKFVARNVTLVEAFAPEGLDDL-PDPDRVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLE 156 (204)
T ss_dssp HHHTCTTEEEEECCTTTTCTTS-CCCSEEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHH
T ss_pred HHhCCCcEEEEeCChhhhhhcC-CCCCEEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHH
Confidence 243 212 22333444332 5799988776553 57889999999999999999974 4577888888888
Q ss_pred hccceeEEe
Q 013393 405 ALKWDGWLS 413 (444)
Q Consensus 405 ~~~w~~~~~ 413 (444)
...|++...
T Consensus 157 ~~g~~~~~~ 165 (204)
T 3e05_A 157 DHGYMVEVA 165 (204)
T ss_dssp HTTCEEEEE
T ss_pred HCCCceeEE
Confidence 888865443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0034 Score=56.78 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=66.9
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcccccc---ccccccCCCCCCcccchhhcccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGT---VHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~---~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
..|+|+.++.|.++..|.... .+|+-++- +..+...-++|+-.+ -.|..+. .-+.+||+|.+.+++..+..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~~~ 122 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHVPD 122 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC--CCSSCEEEEEEESCGGGSCH
T ss_pred CeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC--CCCCceeEEEEechhhcCCH
Confidence 489999999999999887652 25555553 355555555553221 1232222 33689999999998885432
Q ss_pred CCCChhhhhhhhcccccCCcEEEEecc
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
-.+..+|-++-|+|+|||.+++.+.
T Consensus 123 --~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 123 --DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp --HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2358899999999999999998753
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0044 Score=62.19 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=64.5
Q ss_pred CCeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcC-------------CCcEEEEecCccC----CCCCC
Q 013393 45 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-------------IPSTLGVLGTKRL----PYPSR 107 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~-------------~~~~~~~~d~~~l----p~~~~ 107 (444)
+++||=||-|.|..++.+++.... .+.-.++.++.++.+++.- .++.+...|.... +-..+
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~~--~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKPK--MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCS--EEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCeEEEECCCcHHHHHHHHhcCCc--eeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 468999999999999999985332 2222344556666666531 1245666664332 11246
Q ss_pred CccEEEecccc-----ccccc----cHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 108 SFELAHCSRCR-----IDWLQ----RDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 108 sFDlI~~~~~~-----l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
+||+|+.-..- ..... -...+++.+.+.|+|||.++.+...+
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~ 334 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV 334 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 79999964210 00000 11468899999999999999865444
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0057 Score=58.25 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=67.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc---cccccccccCCC-CCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFS-TYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~---~~~~~~~~~~~~-~y~~~~dl~h~~~~~ 360 (444)
..|+|+.++.|.++..|..... +|+-++- +..+...-++ |+ +-+.+.=.+.++ ..+.+||+|.+.+++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 5799999999999999976632 5555554 3445443333 43 223333233344 446899999999999
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..+. +...+|-|+-|+|+|||.+++.+
T Consensus 147 ~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 147 EWVA----DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGCS----CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hccc----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 8442 46889999999999999999965
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.008 Score=56.49 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=65.9
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccccccccccccCCCCCCcccchhhccccccccccC
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 366 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~ 366 (444)
.-..|+|+.++.|.++..|..... +|+=++- +..+...-++..--....=.+.++.-+.+||+|-+.+.+-....
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~- 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE- 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccc-
Confidence 345899999999999999987642 5555554 34555555553311222222334433579999998775442322
Q ss_pred CCChhhhhhhhcccccCCcEEEEec
Q 013393 367 GCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 367 ~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+...+|-|+-|+|+|||.+++..
T Consensus 130 --~~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 130 --NKDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --cHHHHHHHHHHHcCCCeEEEEEe
Confidence 28899999999999999999864
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.013 Score=53.63 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=84.0
Q ss_pred eEEEecccc-cchhhhhccCCCceEEEeccccC-CCchhHH----hhccc-cccccccccCCCCCC-cccchhhcccccc
Q 013393 290 RNVMDMNSN-LGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGL-IGTVHDWCESFSTYP-RTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~-~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~-~~~~~~~~~~~~~y~-~~~dl~h~~~~~~ 361 (444)
..|+|+.+| -|.++..|.... --+|+-++- +..+... -..|+ +-+++.=.+.+..+| .+||+|-++--|.
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 579999999 999988876542 234555554 2334332 22343 223322212233333 8999999886554
Q ss_pred cccc---------------CCCChhhhhhhhcccccCCcEEEE--eccHHHHHHHHHHHhhccceeEEeccccccCCCCC
Q 013393 362 EIEE---------------RGCSFEDLLIEMDRMLRPEGFVII--RDKSSIINYIRKFITALKWDGWLSEVEPRIDALSS 424 (444)
Q Consensus 362 ~~~~---------------~~c~~~~~~~e~drilrp~g~~~~--rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 424 (444)
.... ....+..++-++-|+|+|||.+++ -...+..+++.+.++...|++..... ..+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~g~--- 209 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKF--KVGT--- 209 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEE--CCCC---
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEe--cCCC---
Confidence 2110 011137789999999999999987 44557788999999999998865433 2221
Q ss_pred CCceEEEEEe
Q 013393 425 SEERVLIAKK 434 (444)
Q Consensus 425 ~~~~~l~~~k 434 (444)
.--.+|+.+|
T Consensus 210 ~~~~~l~f~~ 219 (230)
T 3evz_A 210 RWRHSLIFFK 219 (230)
T ss_dssp -CEEEEEEEC
T ss_pred eEEEEEEEec
Confidence 1345666655
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0055 Score=56.46 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=66.6
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc---cccccccccCCCCCCcccchhhccccccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..-..|+|+.++.|.++..|.....- +|+-++- +..+...-++.- +-+.+.-.+.++.-+.+||+|.+..++..
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccc
Confidence 34468999999999999998765321 4444443 244444433321 22222223334544689999999998874
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.. +...+|-++-|+|+|||.+++.+
T Consensus 120 ~~----~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 VE----DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc----hHHHHHHHHHHhcCcCcEEEEEe
Confidence 42 47899999999999999999965
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=96.03 E-value=0.011 Score=56.36 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=46.4
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEecc----------------HHHHHHHHHHHhhccceeE
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK----------------SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~----------------~~~~~~~~~~~~~~~w~~~ 411 (444)
+.+||+|-+..+|..+...--+...+|-|+-|+|||||.+++.+. .-..+++++++..-.++..
T Consensus 172 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 172 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEE
Confidence 467999999998874322112478899999999999999998531 1135778888877767653
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0076 Score=55.89 Aligned_cols=92 Identities=13% Similarity=0.273 Sum_probs=61.0
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc---cccc-cccccCCC-CCCcccchhhcc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL---IGTV-HDWCESFS-TYPRTYDLLHAW 357 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~---~~~~-~~~~~~~~-~y~~~~dl~h~~ 357 (444)
-..|+|+.++.|.++.+|... | .-.|+-++- +..+... -..|+ |-+. .|..+.++ ..+.+||+|.++
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 458999999999999998762 2 235666654 3334332 22343 2222 34444444 446899999866
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
.-. -....++-++-|.|||||.+++
T Consensus 150 ~~~-------~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 150 AAK-------AQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp TTS-------SSHHHHHHHHGGGEEEEEEEEE
T ss_pred CcH-------HHHHHHHHHHHHhcCCCeEEEE
Confidence 422 2367788899999999999999
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0046 Score=56.48 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=65.9
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccc-------cccccccccCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL-------IGTVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~-------~~~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..|+|+.++.|.++.+|..... +|+-++- +..+...-+ .|+ +-....=.+.++.-+.+||++-+.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 4799999999999999976632 5666654 344444333 333 222332233445446899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+++..+. +.-....+|-++-|+|||||.+++.+
T Consensus 109 ~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 109 AFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp SCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 9887442 21123379999999999999999964
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0077 Score=53.82 Aligned_cols=140 Identities=10% Similarity=0.018 Sum_probs=82.6
Q ss_pred EEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhh----ccc---cccccccccCCC-CCCcccchhhcccc
Q 013393 291 NVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYD----RGL---IGTVHDWCESFS-TYPRTYDLLHAWKV 359 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~----rg~---~~~~~~~~~~~~-~y~~~~dl~h~~~~ 359 (444)
.|+|+.+|-|.++..|... |-- +|+-++. +..+...-+ .|+ +-+.+.=.+.++ ..+.+||+|-++..
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 7999999999999888653 221 5555664 344444322 243 323332223343 45689999988765
Q ss_pred ccccc-----cCCCChhhhhhhhcccccCCcEEEEec------cHHHHHHHHHHHhhcc---ceeEEeccccccCCCCCC
Q 013393 360 FSEIE-----ERGCSFEDLLIEMDRMLRPEGFVIIRD------KSSIINYIRKFITALK---WDGWLSEVEPRIDALSSS 425 (444)
Q Consensus 360 ~~~~~-----~~~c~~~~~~~e~drilrp~g~~~~rd------~~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~ 425 (444)
+-... ...-....++-++-|+|+|||.+++-+ ..+..+.+.+.+..+. |++.....-+.. +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~----~~ 178 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQA----NC 178 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCC----SC
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCc----cC
Confidence 41000 000123468999999999999999864 2224555666666554 877544332221 12
Q ss_pred CceEEEEEecc
Q 013393 426 EERVLIAKKKL 436 (444)
Q Consensus 426 ~~~~l~~~k~~ 436 (444)
+..++|.+|..
T Consensus 179 pp~~~~~~~~~ 189 (197)
T 3eey_A 179 PPILVCIEKIS 189 (197)
T ss_dssp CCEEEEEEECC
T ss_pred CCeEEEEEEcc
Confidence 46778877753
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.004 Score=54.80 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=59.1
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH----------HHHHHHHHHhhccceeEEecccc
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALKWDGWLSEVEP 417 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~----------~~~~~~~~~~~~~w~~~~~~~~~ 417 (444)
+.+||+|.+..++.... .+...+|-|+-|+|||||.+++.+... ..+++.+.++.-.+ +.+.....
T Consensus 61 ~~~fD~V~~~~~l~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~ 136 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTT---LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQR 136 (176)
T ss_dssp SSCEEEEEECCSTTCCC---CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEE
T ss_pred CCCEeEEEECChhhhcc---cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcc
Confidence 58999999988777431 246899999999999999999964321 14667777775555 43333211
Q ss_pred cc-CC---------CCCC----CceEEEEEeccccccccc
Q 013393 418 RI-DA---------LSSS----EERVLIAKKKLWDEEVAA 443 (444)
Q Consensus 418 ~~-~~---------~~~~----~~~~l~~~k~~w~~~~~~ 443 (444)
.. .+ .... .--+++++|+-|...+|+
T Consensus 137 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~Kp~~~~gs~~ 176 (176)
T 2ld4_A 137 EPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSR 176 (176)
T ss_dssp ECCCHHHHHHHHHHTCCCCSSEEEEEEEEECCCSSCCSCC
T ss_pred cCCCHHHHHHHHHHhcccCCceEEEEEeccCCcccccCCC
Confidence 00 00 0000 134789999988776653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0046 Score=54.05 Aligned_cols=109 Identities=7% Similarity=0.053 Sum_probs=76.6
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccc--cc-cccccccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL--IG-TVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~--~~-~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
..++|+.++.|.++..|.. +. .+|+-++- +.-+...-+ .|+ +- +-.|+.++++. .+||++.+++.
T Consensus 37 ~~vLdiG~G~G~~~~~l~~-~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~-- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAK-RC--KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT-- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHT-TS--SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC--
T ss_pred CEEEEeCCCCCHHHHHHHh-cC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc--
Confidence 4899999999999999987 32 24554543 233333222 233 11 22344454432 58999998886
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHhhccceeEEe
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWLS 413 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~~~~w~~~~~ 413 (444)
.....++-++-|+ |||.+++-+ ..+-+.++.+.++...|++...
T Consensus 110 ------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 ------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp ------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 3578899999998 999999976 7788888999999888888654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0056 Score=53.82 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=76.5
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccc---cc-cccccccCCCCCCcccchhhcccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL---IG-TVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~---~~-~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
-..|+|+.++.|.++..+...- -+|+-++. +..+...-+ .|+ +- .-.|..+.++.. .+||++-+++.
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCc
Confidence 3589999999999998887654 35555554 233333222 232 11 123444433322 48999988876
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHhhccceeEEe
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWLS 413 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~~~~w~~~~~ 413 (444)
+. .+..++-++-|+|+|||.+++-+ ..+...++.++++...|++...
T Consensus 110 ~~-------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 110 GG-------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp TT-------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred hH-------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence 54 26889999999999999998865 4667788888888877765543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.03 Score=51.91 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=84.6
Q ss_pred eeEEEecccccchhhhhccC-CCceEEEeccccCC-CchhHH----hhccc--cccccccccCCCC---CCcccchhhcc
Q 013393 289 FRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKII----YDRGL--IGTVHDWCESFST---YPRTYDLLHAW 357 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l~~~----~~rg~--~~~~~~~~~~~~~---y~~~~dl~h~~ 357 (444)
-..|+|+.+|-|.++..|.. .|.. .|+=++.. .-+.+. -..|+ |-+++.-.+.++. .+.+||+|.+.
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL--HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 45899999999988877762 2322 35555532 333332 22354 4444433333432 35789999987
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEecc---HHHHHHHHHHHhhccceeEEe-ccccccCCCCCCCceEEEEE
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK---SSIINYIRKFITALKWDGWLS-EVEPRIDALSSSEERVLIAK 433 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~---~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~l~~~ 433 (444)
.+ .++..++-++-|+|+|||.+++-+. .+-+.++.+.++...++.... .+. -+...+...+++.+
T Consensus 149 ~~--------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~l~~~~ 217 (240)
T 1xdz_A 149 AV--------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFK---LPIEESDRNIMVIR 217 (240)
T ss_dssp CC--------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE---CTTTCCEEEEEEEE
T ss_pred cc--------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEe---cCCCCCceEEEEEE
Confidence 63 3478999999999999999998653 344566777777777776321 111 12222345677777
Q ss_pred eccccc
Q 013393 434 KKLWDE 439 (444)
Q Consensus 434 k~~w~~ 439 (444)
|.=.++
T Consensus 218 k~~~~~ 223 (240)
T 1xdz_A 218 KIKNTP 223 (240)
T ss_dssp ECSCCC
T ss_pred ecCCCC
Confidence 764443
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0063 Score=54.82 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=79.3
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh----hccc--ccccc-ccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL--IGTVH-DWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~----~rg~--~~~~~-~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.+|.|.++.+|... |-. +|+-++. +..+...- ..|+ +-+++ |+.+ ++ -+.+||+|.+.++
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEA--HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc-
Confidence 37999999999998888642 321 4555553 23333322 2344 22332 3332 22 1378999987553
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEE-eccccccCCCCCCCceEEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL-SEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
.+...++-++-|+|+|||.+++-.....-++++.+.+ .|+... ..... +...+...+++++|+
T Consensus 142 -------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~---~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 -------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQV---PALDGERHLVVIKAN 205 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEEC---C--CCEEEEEEEEEC
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeecc---CCCCCceEEEEEEec
Confidence 2477899999999999999999876666677777777 666532 10111 122245778887774
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.01 Score=52.48 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=78.9
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH----hhccc--cccccccccCCCCC-Ccccchhhcc-ccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGL--IGTVHDWCESFSTY-PRTYDLLHAW-KVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~--~~~~~~~~~~~~~y-~~~~dl~h~~-~~~ 360 (444)
..|+|+.+|.|.++..|.+. .-+|+=++- +.-+... -+.|+ +-+.++-.+.++.+ +.+||++.++ +.+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 37999999999999999876 235665663 3444432 23354 44455555554322 6789999665 333
Q ss_pred cccc----cCCCChhhhhhhhcccccCCcEEEEecc------HHHHHHHHHHHhhcc---ceeEEeccccccCCCCCCCc
Q 013393 361 SEIE----ERGCSFEDLLIEMDRMLRPEGFVIIRDK------SSIINYIRKFITALK---WDGWLSEVEPRIDALSSSEE 427 (444)
Q Consensus 361 ~~~~----~~~c~~~~~~~e~drilrp~g~~~~rd~------~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~ 427 (444)
.... ...-.....+-|+-|+|+|||.+++-.- .+..+.+.+.+..+. |.+.....-+.. +...
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~ 176 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQI----NTPP 176 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCS----SCCC
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccC----CCCC
Confidence 2100 0111234667899999999999988432 233455666666554 776544332211 1234
Q ss_pred eEEEEEe
Q 013393 428 RVLIAKK 434 (444)
Q Consensus 428 ~~l~~~k 434 (444)
.+++..|
T Consensus 177 ~~~~i~~ 183 (185)
T 3mti_A 177 FLVMLEK 183 (185)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 5666655
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0072 Score=54.24 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=78.3
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh----hccc--cccccccccCCCC---CCcccchhhc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL--IGTVHDWCESFST---YPRTYDLLHA 356 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~----~rg~--~~~~~~~~~~~~~---y~~~~dl~h~ 356 (444)
.-..|+|+.+|-|.++.++... |- .+|+-++- +..+...- ..|+ -=+-.|..+.++. .+.+||+|-+
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACPG--VSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCTT--EEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCEEEEecCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 3468999999999998888653 21 24444443 23332221 1122 1223455554432 2378999998
Q ss_pred cccccccc------c------CCCC----------hhhhhhhhcccccCCcE-EEEeccHHHHHHHHHHHh--hccceeE
Q 013393 357 WKVFSEIE------E------RGCS----------FEDLLIEMDRMLRPEGF-VIIRDKSSIINYIRKFIT--ALKWDGW 411 (444)
Q Consensus 357 ~~~~~~~~------~------~~c~----------~~~~~~e~drilrp~g~-~~~rd~~~~~~~~~~~~~--~~~w~~~ 411 (444)
+--|.... . .... +..++-++-|+|+|||. +++--.....+++.+++. .-.|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 65443100 0 0111 17888999999999999 777555555667777777 6666542
Q ss_pred EeccccccCCCCCCCceEEEEEec
Q 013393 412 LSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
.... ...+.+++++++|.
T Consensus 188 -~~~~-----~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 -RKVK-----DLRGIDRVIAVTRE 205 (215)
T ss_dssp -CEEE-----CTTSCEEEEEEEEC
T ss_pred -EEEE-----ecCCCEEEEEEEEc
Confidence 1111 12235899999875
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.013 Score=54.69 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=77.0
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----c-----------------------------
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----G----------------------------- 332 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g----------------------------- 332 (444)
..-..|+|+.++.|.++..|..... -+|+-++-. ..+...-++ +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 3446899999999999888875433 356666543 334333221 1
Q ss_pred --cc-cc-ccccccCCCCCC---cccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH------------
Q 013393 333 --LI-GT-VHDWCESFSTYP---RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------ 393 (444)
Q Consensus 333 --~~-~~-~~~~~~~~~~y~---~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~------------ 393 (444)
-| -+ -.|..+.-+.-+ .+||+|.+..++..+..+.-+...+|-++-|+|+|||.+++.+..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 02 11 123333222123 799999999888732221124678999999999999999997621
Q ss_pred ----HHHHHHHHHHhhccceeE
Q 013393 394 ----SIINYIRKFITALKWDGW 411 (444)
Q Consensus 394 ----~~~~~~~~~~~~~~w~~~ 411 (444)
-..+++.+++..-.+++.
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~ 234 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIE 234 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEE
T ss_pred cccccCHHHHHHHHHHCCCEEE
Confidence 124477788877777664
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0091 Score=54.31 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=69.2
Q ss_pred HHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----c-ccc-cccccccCCC
Q 013393 273 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----G-LIG-TVHDWCESFS 345 (444)
Q Consensus 273 v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g-~~~-~~~~~~~~~~ 345 (444)
.+.+...+.+.+.. -..|+|+.++.|.++..|..... +|+-++- +..+...-++ | -+- +..|..+ ++
T Consensus 25 ~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~ 98 (227)
T 1ve3_A 25 IETLEPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LS 98 (227)
T ss_dssp HHHHHHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CC
T ss_pred HHHHHHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CC
Confidence 33333444333433 45899999999999988875532 5665554 3344433322 1 111 2223332 33
Q ss_pred CCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 346 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 346 ~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
.-+.+||+|.+..++.... .-+...++-++-|+|+|||.+++-+..
T Consensus 99 ~~~~~~D~v~~~~~~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 99 FEDKTFDYVIFIDSIVHFE--PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp SCTTCEEEEEEESCGGGCC--HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCcEEEEEEcCchHhCC--HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3347999999998844111 123678999999999999999997653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.016 Score=49.97 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=72.0
Q ss_pred eEEEecccccchhhhhccCC--C---ceEEEeccccCCCchhHHhhccccccccccccCCC--------CCCcccchhhc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--D---VWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFS--------TYPRTYDLLHA 356 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~---~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~--------~y~~~~dl~h~ 356 (444)
.+|+|+.++.|+++.++... | +...-+-| -+.+ . .+--+..|..+ ++ .-+.+||+|.+
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-----~~~~--~-~~~~~~~d~~~-~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----MDPI--V-GVDFLQGDFRD-ELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----CCCC--T-TEEEEESCTTS-HHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-----cccc--C-cEEEEEccccc-chhhhhhhccCCCCceeEEEE
Confidence 48999999999999888643 2 22222222 1111 1 11111123222 11 12478999999
Q ss_pred cccccccccCC-CC------hhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhccceeEEeccccccCCCCCCCce
Q 013393 357 WKVFSEIEERG-CS------FEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 428 (444)
Q Consensus 357 ~~~~~~~~~~~-c~------~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 428 (444)
+..+....... -. ...++-++-|+|+|||.+++... ..-..++.+.+.. .|+... ...+.. ......|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~ 171 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVK-VRKPDS-SRARSREV 171 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEE-EECCTT-SCTTCCEE
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEE-eecCCc-ccccCceE
Confidence 88775211000 00 16789999999999999999532 1223344444444 365422 222221 12234688
Q ss_pred EEEEEec
Q 013393 429 VLIAKKK 435 (444)
Q Consensus 429 ~l~~~k~ 435 (444)
.++|++.
T Consensus 172 ~~~~~~~ 178 (180)
T 1ej0_A 172 YIVATGR 178 (180)
T ss_dssp EEEEEEE
T ss_pred EEEEccC
Confidence 8888763
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.012 Score=55.51 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=80.6
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHH----hhccc---ccccc-ccccCCCCC-Ccccchhhccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGL---IGTVH-DWCESFSTY-PRTYDLLHAWK 358 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~----~~rg~---~~~~~-~~~~~~~~y-~~~~dl~h~~~ 358 (444)
-..|+|+.++-|+++..|....-. +|+-++-. ..+... -..|+ +-+++ |..+....+ +.+||+|-++-
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 357999999999999988776433 56666643 333322 22244 22333 333322223 58999999975
Q ss_pred ccccc----------------ccCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEE
Q 013393 359 VFSEI----------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL 412 (444)
Q Consensus 359 ~~~~~----------------~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~ 412 (444)
-|... ....+.+..++-++-|+|+|||.+++--..+.+.++...+....|+...
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 54311 0112567889999999999999999976677788888888888888753
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0055 Score=55.11 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=71.9
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc----cccc-ccccccCCCCCCcccchhhcccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGT-VHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg----~~~~-~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
..|+|+.++-|.++..|.....- +|+-++- +..+...-++. -+-+ ..|.. .++.-+.+||+|-+.++|..+
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~-~~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR-KLDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTT-SCCSCSSCEEEEEEESHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchh-cCCCCCCcccEEEECcchhhh
Confidence 47999999999999888754210 4444443 23333322221 1112 22332 233334799999998888633
Q ss_pred c-----------cCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHH--hhccceeEEec
Q 013393 364 E-----------ERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFI--TALKWDGWLSE 414 (444)
Q Consensus 364 ~-----------~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~--~~~~w~~~~~~ 414 (444)
. .+.-....++-|+-|+|+|||.+++.+-..- ...+.++ ....|+.....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 183 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLRHAT 183 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEEEEE
Confidence 2 0112468899999999999999999875431 1122333 34468775443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.034 Score=51.83 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=82.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc-ccc-----cccccc-cCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG-LIG-----TVHDWC-ESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg-~~~-----~~~~~~-~~~~~y~~~~dl~h~~~~~~ 361 (444)
..|+|+.++-|+|+..|.....- .|+=+|- ++.|.....+. -++ -....+ +.++. .-+|..-.+-+|+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~ 114 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI 114 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence 47999999999999888765421 4555663 45555433221 011 111112 33332 0135555555665
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEe-------------------cc---HHHHHHHHHHHhhccceeEEecccccc
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIR-------------------DK---SSIINYIRKFITALKWDGWLSEVEPRI 419 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~r-------------------d~---~~~~~~~~~~~~~~~w~~~~~~~~~~~ 419 (444)
. +..+|-|+-|+|+|||.+++- |. ...++++.+++....|++......+-.
T Consensus 115 ~-------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~ 187 (232)
T 3opn_A 115 S-------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIK 187 (232)
T ss_dssp C-------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSC
T ss_pred h-------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCC
Confidence 2 478999999999999999873 11 135678888999989988654443333
Q ss_pred CCCCCCCceEEEEEec
Q 013393 420 DALSSSEERVLIAKKK 435 (444)
Q Consensus 420 ~~~~~~~~~~l~~~k~ 435 (444)
++. .+.|-++.++|+
T Consensus 188 g~~-gn~e~l~~~~~~ 202 (232)
T 3opn_A 188 GGA-GNVEFLVHLLKD 202 (232)
T ss_dssp BTT-TBCCEEEEEEES
T ss_pred CCC-CCHHHHHHHhhc
Confidence 332 245778888774
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0089 Score=54.36 Aligned_cols=120 Identities=14% Similarity=0.172 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc----cc-------
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL------- 333 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r----g~------- 333 (444)
...+++.+.....+. ...-..|+|+.++.|.++.+|... +. .+|+-++- +..+...-++ |+
T Consensus 12 ~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~ 85 (217)
T 3jwh_A 12 SLNQQRMNGVVAALK----QSNARRVIDLGCGQGNLLKILLKDSFF--EQITGVDVSYRSLEIAQERLDRLRLPRNQWER 85 (217)
T ss_dssp CHHHHHHHHHHHHHH----HTTCCEEEEETCTTCHHHHHHHHCTTC--SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTT
T ss_pred CHHHHHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHhhCCC--CEEEEEECCHHHHHHHHHHHHHhcCCcccCcc
Confidence 344455544444443 223358999999999999999753 32 14555553 3444443333 21
Q ss_pred cccccccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH
Q 013393 334 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 394 (444)
Q Consensus 334 ~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~ 394 (444)
+-+++.-.+..+.-+.+||+|-+..+|..+.. -.+..+|-++-|+|+|||.+++-+..+
T Consensus 86 v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 86 LQLIQGALTYQDKRFHGYDAATVIEVIEHLDL--SRLGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp EEEEECCTTSCCGGGCSCSEEEEESCGGGCCH--HHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred eEEEeCCcccccccCCCcCEEeeHHHHHcCCH--HHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence 11222111223333479999999999885532 245788999999999999998876653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0028 Score=77.95 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=40.8
Q ss_pred eEEEECCCcchHHHHHhhC---------CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-CCCCCCccEEEecc
Q 013393 47 NVLDVGCGVASFGAYLLSH---------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSR 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---------~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p~~~~sFDlI~~~~ 116 (444)
+||+||.|+|..+..+.+. .++..|+++.-...++.++.. .++.....|.... ++...+||+|+++.
T Consensus 1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---LHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---HTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred eEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---cccccccccccccccCCCCceeEEEEcc
Confidence 7999999999765544321 234456665433333322321 1222222233221 34456799999988
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
++|-.++....+.++.++|||||++++..
T Consensus 1320 -vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1320 -ALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp -C--------------------CCEEEEEE
T ss_pred -cccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 57777888899999999999999998864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0068 Score=58.26 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=63.8
Q ss_pred ceeEEEecccccchhhhhccC--CCceEEEeccccC-CCchhHHhhc-----cc---cccccccccCCCCCC------cc
Q 013393 288 TFRNVMDMNSNLGGFAAALKD--KDVWVMNVAPVRM-SARLKIIYDR-----GL---IGTVHDWCESFSTYP------RT 350 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~--~~~wv~~~~~~~~-~~~l~~~~~r-----g~---~~~~~~~~~~~~~y~------~~ 350 (444)
.-..|+|+.+|.|.++..|.. .+. -+|+-++- +..+...-++ |. +-..+.=.+.++.-+ .+
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 456899999999999999983 222 24555553 3444444333 22 222222223333222 69
Q ss_pred cchhhccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 351 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 351 ~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
||+|++..++... +...++-++-|+|||||.+++
T Consensus 114 fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 114 IDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEE
Confidence 9999999988743 689999999999999999998
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.013 Score=53.25 Aligned_cols=139 Identities=11% Similarity=0.011 Sum_probs=83.3
Q ss_pred CCChhHHHhhHhhHHHHHHHH-HHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh---
Q 013393 256 GVTTEEFHEDIGIWQVRVVDY-WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD--- 330 (444)
Q Consensus 256 g~~~~~f~~~~~~w~~~v~~y-~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~--- 330 (444)
|+..+.|..+....++.+... ...+. +. .-..|+|+.++.|.++..|... ...|+-++- +..+...-+
T Consensus 26 g~~d~~f~~~~~~~~~~~~~~~l~~l~--~~--~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~ 98 (204)
T 3njr_A 26 GRPESAFAHDGQITKSPMRALTLAALA--PR--RGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNID 98 (204)
T ss_dssp CCCGGGSCCSSCCCCHHHHHHHHHHHC--CC--TTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCHHHhhcCCCCCcHHHHHHHHHhcC--CC--CCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHH
Confidence 334444544444445555432 22232 33 3357999999999999887655 234555553 344443322
Q ss_pred -cccc---cccc-ccccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHh
Q 013393 331 -RGLI---GTVH-DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFIT 404 (444)
Q Consensus 331 -rg~~---~~~~-~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~ 404 (444)
.|+- -+.+ |..+.++.. .+||++-+++.+ +.. ++-++-|.|||||.+++.. ..+.+.++.+.++
T Consensus 99 ~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 168 (204)
T 3njr_A 99 TYGLSPRMRAVQGTAPAALADL-PLPEAVFIGGGG--------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHA 168 (204)
T ss_dssp HTTCTTTEEEEESCTTGGGTTS-CCCSEEEECSCC--------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHH
T ss_pred HcCCCCCEEEEeCchhhhcccC-CCCCEEEECCcc--------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHH
Confidence 2432 2222 223323333 358887655522 456 8999999999999999965 4677888888888
Q ss_pred hccceeE
Q 013393 405 ALKWDGW 411 (444)
Q Consensus 405 ~~~w~~~ 411 (444)
...+++.
T Consensus 169 ~~g~~i~ 175 (204)
T 3njr_A 169 RHGGQLL 175 (204)
T ss_dssp HHCSEEE
T ss_pred hCCCcEE
Confidence 7777764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.014 Score=58.52 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccCCCchhH----Hhhccc---cccccccccCC
Q 013393 272 RVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESF 344 (444)
Q Consensus 272 ~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~~----~~~rg~---~~~~~~~~~~~ 344 (444)
+.+.|...+...+....=..|+|+.+|.|.++..+.+... -.|+-++..+-+.. +-..|+ |-+.+.-.+.+
T Consensus 47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 124 (376)
T 3r0q_C 47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDI 124 (376)
T ss_dssp HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhc
Confidence 3344555553333333446899999999999887765432 14555554433332 334454 44455444554
Q ss_pred CCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 345 STYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 345 ~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+ +|.+||+|.+..+...+. +.-.+..++-+++|+|+|||.+++.
T Consensus 125 ~-~~~~~D~Iv~~~~~~~l~-~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 125 S-LPEKVDVIISEWMGYFLL-RESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp C-CSSCEEEEEECCCBTTBT-TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred C-cCCcceEEEEcChhhccc-chHHHHHHHHHHHhhCCCCeEEEEe
Confidence 4 569999999966443221 2234777999999999999999873
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.012 Score=52.76 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=73.0
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----cc-cccccccccCCCCCCcccchhhccccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
.|+|+.++.|.++..|..... +|+-++.. ..+...-++ |+ +-+.+.=.+.++.-+.+||+|.+. |...
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~- 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHL- 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCC-
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcC-
Confidence 899999999999999987643 66666643 444443333 33 222222233334334799999874 3322
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEecc-----------------HHHHHHHHHHHhhccceeE
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDK-----------------SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~-----------------~~~~~~~~~~~~~~~w~~~ 411 (444)
..-+...++-++-|+|+|||.+++.+. .-..+++++++. .|++.
T Consensus 106 -~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 106 -PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp -CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEE
Confidence 122477899999999999999999631 123567777777 66664
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0081 Score=57.09 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=65.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----cc---cccccccccCCCC-CCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFST-YPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g~---~~~~~~~~~~~~~-y~~~~dl~h~~~~~ 360 (444)
..|+|+.++.|+++..|...+. -+|+-++-. ..+...-++ |+ +-+.+.=++.++. -+.+||+|.+.+++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 4899999999999988875442 145555542 344433332 33 2333322333333 36799999999887
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
.....+.-+...+|-|+-|+|+|||.+++...
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 53212223467899999999999999998653
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0062 Score=61.10 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=75.8
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhhc---------c-c----cccccccccCC------CC
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR---------G-L----IGTVHDWCESF------ST 346 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~r---------g-~----~~~~~~~~~~~------~~ 346 (444)
..|+|+.++.|.++..|... |-. .|+=++- +..+...-++ | + +-..+.-.+.+ +.
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG--KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC--EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 47999999999998887643 322 4555554 3455554444 4 1 22222222222 33
Q ss_pred CCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH-----------------------HHHHHHHHHH
Q 013393 347 YPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------------SIINYIRKFI 403 (444)
Q Consensus 347 y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~-----------------------~~~~~~~~~~ 403 (444)
-+.+||+|+++.++... . +...+|-|+-|+|||||++++.|-. -..+++.+++
T Consensus 163 ~~~~fD~V~~~~~l~~~-~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 238 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLS-T---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV 238 (383)
T ss_dssp CTTCEEEEEEESCGGGC-S---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred CCCCEEEEEEccchhcC-C---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence 35799999999999843 2 3789999999999999999996421 1126777788
Q ss_pred hhcccee
Q 013393 404 TALKWDG 410 (444)
Q Consensus 404 ~~~~w~~ 410 (444)
..-.++.
T Consensus 239 ~~aGF~~ 245 (383)
T 4fsd_A 239 AEAGFRD 245 (383)
T ss_dssp HHTTCCC
T ss_pred HHCCCce
Confidence 7777753
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.011 Score=57.95 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCCCchhH----Hhhccc---cccccccccCCCCCC-cccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTYP-RTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~~----~~~rg~---~~~~~~~~~~~~~y~-~~~dl~h~~~~~~ 361 (444)
..|+|+.+|-|.++..+...+. -.|+-++....+.. +-+.|+ |-+.+.-.+.++ .| .+||+|.+..+..
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred CEEEEecCccHHHHHHHHHCCC--CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchh
Confidence 4899999999999887765542 24444444323332 233455 334444444444 34 8999999886544
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEE
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVI 388 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~ 388 (444)
.+. +.-.+..++-+++|.|+|||.++
T Consensus 117 ~l~-~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 117 FLL-YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBS-TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hcc-cHHHHHHHHHHHHhhcCCCeEEE
Confidence 221 22357789999999999999997
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0096 Score=54.67 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=63.1
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc----cccccccccccCCCCCCcccchhhccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r----g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
=..|+|+.++.|.++..|... |- .+|+-++- +..+...-++ |-+-+.+.-.+.++ ++.+||+|.+..++..
T Consensus 45 ~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 45 NPDILDLGAGTGLLSAFLMEKYPE--ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD-FEEKYDMVVSALSIHH 121 (234)
T ss_dssp SCEEEEETCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC-CCSCEEEEEEESCGGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC-CCCCceEEEEeCcccc
Confidence 368999999999999888653 21 24555553 3444443333 11222222223333 2389999999998874
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.. -....+|-|+-|+|+|||.+++-|
T Consensus 122 ~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 122 LED--EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp SCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCH--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 421 123358999999999999999966
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0092 Score=57.79 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=65.7
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccc---cccccccccCCCCCCcccchhhccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL---IGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~---~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
..-..|+|+.++.|.++..|.+.. -..|+-++- +..+...- +.|+ +-..+.=.+.++.=+.+||+|.+..
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 445689999999999999887541 124555553 34444332 2344 2222222334442248999999998
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++... +...+|-|+-|+|+|||.+++-+
T Consensus 194 ~l~~~-----~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 194 STMYV-----DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp CGGGS-----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhC-----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 88743 38999999999999999999854
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.021 Score=52.98 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=65.2
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhcc-ccccccccccCCCCCCcccchhhcccccccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg-~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
..-..|+|+.++.|.++..|.+. |. -+|+-++- +..+...-++. -+-..+.-.+.++ -+.+||+|++..++...
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 108 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGV--NVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWV 108 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCT--TSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhC
Confidence 33458999999999999888653 11 13444443 24444444441 0222222234455 46899999999988743
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. +...+|-|+-|+|+|||.+++..
T Consensus 109 ~----~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 109 P----DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp T----THHHHHHHHGGGEEEEEEEEEEE
T ss_pred C----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 47889999999999999999964
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.021 Score=56.42 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=67.6
Q ss_pred HHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccCCCchhH----Hhhccc---cccccccccCCCCC
Q 013393 275 DYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTY 347 (444)
Q Consensus 275 ~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~~----~~~rg~---~~~~~~~~~~~~~y 347 (444)
.|...+...+....=..|+|+.+|.|.++..+...+. -.|+-++....+.. +-+.|+ |-+.+.-.+.++ .
T Consensus 37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 113 (348)
T 2y1w_A 37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-L 113 (348)
T ss_dssp HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-C
T ss_pred HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC-C
Confidence 3444443333333345899999999999887765542 13444443322322 222354 333333233332 4
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
|..||+|-+..++..+.. -.+...+.++-|+|+|||.+++.
T Consensus 114 ~~~~D~Ivs~~~~~~~~~--~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 114 PEQVDIIISEPMGYMLFN--ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp SSCEEEEEECCCBTTBTT--TSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCceeEEEEeCchhcCCh--HHHHHHHHHHHhhcCCCeEEEEe
Confidence 678999999887764432 24677888999999999999853
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.033 Score=52.38 Aligned_cols=140 Identities=14% Similarity=0.038 Sum_probs=85.6
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccCC-CchhH----Hhhccc--cccccccccCCC---CCCcccchhhc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVHDWCESFS---TYPRTYDLLHA 356 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~----~~~rg~--~~~~~~~~~~~~---~y~~~~dl~h~ 356 (444)
.-..|+|+.+|-|..+..|... |-+ .|+=++.. .-+.+ +-.-|+ |=++|.-.|.++ .++.+||+|-+
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPEL--ELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 3458999999999887776532 322 35555532 33332 233355 344444444444 35589999987
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEec---cHHHHHHHHHHHhhccceeEEeccccccCCCCCCCceEEEEE
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD---KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAK 433 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (444)
..+ .++..++-++-|+|+|||.+++-. ..+-+.++++.++.+.++.... .+ -.-|...+...+++.+
T Consensus 158 ~a~--------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~-~~-~~~p~~~~~R~l~~~~ 227 (249)
T 3g89_A 158 RAV--------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEV-LA-LQLPLSGEARHLVVLE 227 (249)
T ss_dssp ESS--------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEE-EE-EECTTTCCEEEEEEEE
T ss_pred CCc--------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEE-EE-eeCCCCCCcEEEEEEE
Confidence 543 247788899999999999888743 3556677777778888876421 11 1122222345667777
Q ss_pred eccccc
Q 013393 434 KKLWDE 439 (444)
Q Consensus 434 k~~w~~ 439 (444)
|.=.++
T Consensus 228 k~~~t~ 233 (249)
T 3g89_A 228 KTAPTP 233 (249)
T ss_dssp ECSCCC
T ss_pred eCCCCC
Confidence 765543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.014 Score=57.80 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=63.8
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCCCchh----HHhhccc---cccccccccCCCCCC-cccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLK----IIYDRGL---IGTVHDWCESFSTYP-RTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~----~~~~rg~---~~~~~~~~~~~~~y~-~~~dl~h~~~~~~ 361 (444)
..|+|+.+|-|.++..+.+.+. -.|+=++...-+. .+-..|+ |-+.+.-.+.++ +| .+||+|.+..+..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMGY 144 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCBB
T ss_pred CEEEEEeccchHHHHHHHHCCC--CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccccc
Confidence 5799999999999988876643 1344444433333 2334555 344444445543 44 8999999876544
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
.+ ...-.+..++-+++|+|+|||.++.
T Consensus 145 ~l-~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CL-FYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TB-TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cc-cCchhHHHHHHHHHHhCCCCCEEcc
Confidence 22 1224578899999999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.024 Score=54.32 Aligned_cols=94 Identities=14% Similarity=0.259 Sum_probs=63.0
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc-----cccccccccCCCCCCcccchhhcc-cc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-----IGTVHDWCESFSTYPRTYDLLHAW-KV 359 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~-----~~~~~~~~~~~~~y~~~~dl~h~~-~~ 359 (444)
.|+|+.++.|.++..|.... .+|+-++- +..+...-++ |+ +-+.+.=.+.++. +.+||+|.+. .+
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS 160 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred cEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence 79999999999999998763 25666664 3444443333 21 2233333344554 8999998854 44
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+.... .-....+|-++-|+|||||.+++.
T Consensus 161 ~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 161 INELD--EADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HTTSC--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCC--HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 44221 123688999999999999999994
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.036 Score=52.56 Aligned_cols=135 Identities=13% Similarity=0.225 Sum_probs=85.2
Q ss_pred eEEEecccccchhhhhccC-CCceEEEeccccC-CCchhHHhhc----cc--cc-cccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYDR----GL--IG-TVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~-~~~l~~~~~r----g~--~~-~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.+|-|.++.+|.. .|.+ +|+-++. +..+.+.-++ |+ +- +-.|+.+.++ +.+||+|-++--+
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 4799999999999988863 2332 4555554 3444443322 33 22 2335666554 5789999987444
Q ss_pred ccc-----------ccCC----------CChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhccceeEEecccccc
Q 013393 361 SEI-----------EERG----------CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRI 419 (444)
Q Consensus 361 ~~~-----------~~~~----------c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 419 (444)
... .... -.+..++-++-|.|+|||++++.....-.++++++++...|+.. ....
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v-~~~~--- 262 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDV-ETCR--- 262 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTC-CEEE---
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEE-EEEe---
Confidence 311 0000 12467888999999999999997766667788888887777531 1111
Q ss_pred CCCCCCCceEEEEEe
Q 013393 420 DALSSSEERVLIAKK 434 (444)
Q Consensus 420 ~~~~~~~~~~l~~~k 434 (444)
...+.+++++++|
T Consensus 263 --d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 263 --DYGDNERVTLGRY 275 (276)
T ss_dssp --CTTSSEEEEEEEC
T ss_pred --cCCCCCcEEEEEE
Confidence 1235789998875
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.016 Score=55.96 Aligned_cols=122 Identities=12% Similarity=0.074 Sum_probs=72.3
Q ss_pred hhHHHHH-HHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhcc-----------c
Q 013393 267 GIWQVRV-VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG-----------L 333 (444)
Q Consensus 267 ~~w~~~v-~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg-----------~ 333 (444)
+|-+..+ +.+...+...+ ..-..|+|+.++.|+++..|...+. -+|+-+|-. ..+...-+|- .
T Consensus 14 ~~~k~~l~~~~~~~l~~~~--~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~ 89 (313)
T 3bgv_A 14 NWMKSVLIGEFLEKVRQKK--KRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYI 89 (313)
T ss_dssp HHHHHHHHHHHHHHHHHTC----CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CC
T ss_pred HHHHHHHHHHHHHHhhhcc--CCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhccccccc
Confidence 3334433 34555554222 2446899999999999998876543 256666643 4444433321 1
Q ss_pred --cccccccccCCC------CCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 334 --IGTVHDWCESFS------TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 334 --~~~~~~~~~~~~------~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
+-..+.=++.++ .-+.+||+|-+...+.....+.-+...+|-++-|+|+|||.+++...
T Consensus 90 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 90 FSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 122222233333 22459999998877652211212356899999999999999998644
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=56.04 Aligned_cols=112 Identities=9% Similarity=0.065 Sum_probs=74.1
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccccc---cccccccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~~~---~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
..|+|+.++.|+|+..+...-.= .|+-++. +..+...- ..|+-. .++.=++.+.. +.+||++.++..++
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~~ 203 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVVR 203 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCSS
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCchh
Confidence 47999999999999877642110 3555553 23333322 225432 23333333433 67999997765433
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEeccH-------HHHHHHHHHHhhccceeEE
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-------SIINYIRKFITALKWDGWL 412 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~-------~~~~~~~~~~~~~~w~~~~ 412 (444)
...++-++-|+|+|||.+++-+.. +.++++++.+....|++..
T Consensus 204 --------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 204 --------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp --------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred --------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 366788899999999999995443 5678889999999998864
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0091 Score=53.65 Aligned_cols=97 Identities=11% Similarity=0.180 Sum_probs=61.5
Q ss_pred eEEEecccccchhhh-hccCCCceEEEeccccCC-CchhHHhh----ccc-cccccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAA-ALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a-~~~~~~~wv~~~~~~~~~-~~l~~~~~----rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..|+|+.++.|.+++ .+..... +|+-++.. .-+...-+ .|. +-+.+.-.+.++.-+.+||+|.+.+++..
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 589999999998844 3333322 55555543 33433322 231 22222223334433589999999887764
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+. .-+...++-|+-|+|+|||.+++.+
T Consensus 102 ~~--~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 102 MR--KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp SC--HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 42 1247889999999999999999965
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.01 Score=59.04 Aligned_cols=101 Identities=13% Similarity=0.198 Sum_probs=65.1
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHhh----ccccc----cccccccCCCCCCcccchhhcc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~~----rg~~~----~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
.....|+|+..+-|.++.+|.+. |-. .|+-.|-+..+...-+ .|+-+ +-+|..+.=..+|.+||++.+.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEV--EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTC--EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC--EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 45689999999999999998642 322 3444444444443332 34322 2223322100367899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+++..+... ....+|-++-|.|+|||.++|-|
T Consensus 256 ~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSEE--EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCHH--HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCHH--HHHHHHHHHHHhcCCCcEEEEEe
Confidence 988744321 34678999999999999999854
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.048 Score=52.65 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=29.2
Q ss_pred eEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHH
Q 013393 47 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQ 83 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~ 83 (444)
+|||++||+|..+..+++ +.++|+|+++..+..+..+
T Consensus 238 ~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 238 VVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKER 276 (297)
T ss_dssp EEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 899999999999988876 4688888887666544433
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=55.42 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=74.8
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHH----hhccc-cccccccccCCCCCCcccchhhccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~----~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
-..|+|+.+|.|.++..|..... +|+-++-. .-+... -..|+ +-+++.=.+.++. +.+||+|.+..+|..
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 45799999999999999876632 56666643 444332 23343 2222222223333 799999999999874
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEecc--------------HHHHHHHHHHHhhccceeE
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK--------------SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd~--------------~~~~~~~~~~~~~~~w~~~ 411 (444)
+. .-.+..++-++-|+|+|||.++|-.. .-.-++++++... |++.
T Consensus 197 ~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 255 (286)
T 3m70_A 197 LN--RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFL 255 (286)
T ss_dssp SC--GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEE
T ss_pred CC--HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEE
Confidence 42 23577899999999999999776321 1113466677666 7774
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.031 Score=49.87 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=44.4
Q ss_pred cccchhhccccccccccCC-------CChhhhhhhhcccccCCcEEEEeccH-HHHHHHHHHHhhccceeEEeccccccC
Q 013393 349 RTYDLLHAWKVFSEIEERG-------CSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDGWLSEVEPRID 420 (444)
Q Consensus 349 ~~~dl~h~~~~~~~~~~~~-------c~~~~~~~e~drilrp~g~~~~rd~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~ 420 (444)
.+||++-++..+.....+. -....++-++-|+|+|||.+++.... +...++...+... |.. +....+..+
T Consensus 105 ~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~-v~~~~~~~~ 182 (201)
T 2plw_A 105 KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQL-VHTTKPKAS 182 (201)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEE-EEECCCC--
T ss_pred CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-Hhe-EEEECCccc
Confidence 6899999887654110000 00124788899999999999984211 1233444444443 332 122222211
Q ss_pred CCCCCCceEEEEEe
Q 013393 421 ALSSSEERVLIAKK 434 (444)
Q Consensus 421 ~~~~~~~~~l~~~k 434 (444)
...+.|..+||++
T Consensus 183 -r~~s~e~y~v~~~ 195 (201)
T 2plw_A 183 -RNESREIYLVCKN 195 (201)
T ss_dssp ----CCEEEEEEEE
T ss_pred -CCcCceEEEEEec
Confidence 1234688999986
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.027 Score=54.94 Aligned_cols=122 Identities=14% Similarity=0.173 Sum_probs=78.1
Q ss_pred hccCCceeEEEecccccchhhhhccC-CCceEEEeccccCCCchhH----Hhhccccc----cccccccCCCCCCcccch
Q 013393 283 VAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARLKI----IYDRGLIG----TVHDWCESFSTYPRTYDL 353 (444)
Q Consensus 283 ~l~~~~~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~~~l~~----~~~rg~~~----~~~~~~~~~~~y~~~~dl 353 (444)
.+.......|+|..++-|.++.+|.+ .|-. .++-.|-+..+.. +.+.|+-+ +-+|..++ .|-+||+
T Consensus 164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~p~~~D~ 238 (332)
T 3i53_A 164 KYDWAALGHVVDVGGGSGGLLSALLTAHEDL--SGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP---LPAGAGG 238 (332)
T ss_dssp SSCCGGGSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CCCSCSE
T ss_pred hCCCCCCCEEEEeCCChhHHHHHHHHHCCCC--eEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC---CCCCCcE
Confidence 34556778999999999999988864 2321 2222233333332 22335422 23444444 4558999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH----------------------HHHHHHHHHHhhccceeE
Q 013393 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------------SIINYIRKFITALKWDGW 411 (444)
Q Consensus 354 ~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~----------------------~~~~~~~~~~~~~~w~~~ 411 (444)
+.+.+++..+... ....+|-++=|.|+|||.++|-|.. ...++++++++.-.++..
T Consensus 239 v~~~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 239 YVLSAVLHDWDDL--SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp EEEESCGGGSCHH--HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred EEEehhhccCCHH--HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence 9999998743321 2578999999999999999996541 114566777777777663
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.011 Score=54.27 Aligned_cols=108 Identities=11% Similarity=0.125 Sum_probs=71.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc--ccccccccccCCCCC-Ccccchhhcccccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG--LIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg--~~~~~~~~~~~~~~y-~~~~dl~h~~~~~~~~~~ 365 (444)
..|+|+.++-|.++..|.... .+|+-++- +..+...-++. +-=+-.|+.+.++.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 479999999999999998763 25666664 35555555552 212234555666643 5899999865
Q ss_pred CCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhcccee
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 410 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~ 410 (444)
-+...++-++-|+|||||.++.-.......++.+.+..-.++.
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence 1366888999999999999984322223344555555544443
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.078 Score=51.21 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECC------CcchHHH-HHhhC--CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 21 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGC------GVASFGA-YLLSH--DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 21 ~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGC------GtG~~a~-~La~~--~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
+.+|.+. -+.+.-..-..+.+. +|||+|+ -.|++.. .+... .++++|+.+... ..+
T Consensus 90 v~kytql-cqyl~~~~~~vp~gm---rVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------da~ 154 (344)
T 3r24_A 90 VAKYTQL-CQYLNTLTLAVPYNM---RVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------DAD 154 (344)
T ss_dssp HHHHHHH-HHHHTTSCCCCCTTC---EEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------SSS
T ss_pred HHHHHHH-HHHhccccEeecCCC---EEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------CCC
Confidence 4555443 334432222445555 9999997 5666432 23233 578888888642 112
Q ss_pred cEEEEecCccCCCCCCCccEEEeccc---cccc-c-----ccH-HHHHHHHHhhcCCCeEEEEEcC
Q 013393 92 STLGVLGTKRLPYPSRSFELAHCSRC---RIDW-L-----QRD-GILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~~sFDlI~~~~~---~l~~-~-----~d~-~~~L~ei~rvLkPGG~lvis~p 147 (444)
.+.++|..... ..++||+|+|-.+ .-+- . ... +.++.=+.++|+|||-|++-..
T Consensus 155 -~~IqGD~~~~~-~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 155 -STLIGDCATVH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp -EEEESCGGGEE-ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -eEEEccccccc-cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 44677754433 2478999998421 0110 0 112 3456666779999999998543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.017 Score=55.35 Aligned_cols=98 Identities=10% Similarity=0.189 Sum_probs=58.7
Q ss_pred eeEEEecccccchhhhh----ccC-CCceEEEeccccC-CCchhHHhhc-----ccccccccc----ccCCC------CC
Q 013393 289 FRNVMDMNSNLGGFAAA----LKD-KDVWVMNVAPVRM-SARLKIIYDR-----GLIGTVHDW----CESFS------TY 347 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~----~~~-~~~wv~~~~~~~~-~~~l~~~~~r-----g~~~~~~~~----~~~~~------~y 347 (444)
=..|+|+.+|-|.++.. +.. .|-+...++=++. +.-|...-+| |+-.+--.| .|.++ .-
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 34799999999986543 222 1322112344442 2444433332 321111111 11221 12
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+.+||+|++..++-.+. +....|-||-|+|+|||.+++-
T Consensus 133 ~~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVK----DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecC----CHHHHHHHHHHHcCCCcEEEEE
Confidence 48999999999988442 4788999999999999999984
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.018 Score=55.35 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=25.5
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDV 77 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~di 77 (444)
.+||.+||.|..+..++++ .|+|+|.++..+
T Consensus 25 ~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai 57 (285)
T 1wg8_A 25 VYVDATLGGAGHARGILERGGRVIGLDQDPEAV 57 (285)
T ss_dssp EEEETTCTTSHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8999999999999999985 577777666443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.033 Score=52.44 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=73.8
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccc-ccccc-ccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL-IGTVH-DWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~-~~~~~-~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..|+|+.+|.|.++.++..... +|+-++- +..+...-+ .|+ +-+++ |..+.++ +.+||+|.++.++.
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAE- 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHH-
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHH-
Confidence 4899999999999888765433 5555553 344444333 243 22222 3333332 46899999876554
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHhhccceeE
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~~~~w~~~ 411 (444)
.+..++-++-|+|+|||.+++.+ ...-.+++++.++...++..
T Consensus 196 ------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEE
T ss_pred ------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEE
Confidence 25788999999999999999854 23346778888887778764
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.031 Score=51.77 Aligned_cols=98 Identities=16% Similarity=0.291 Sum_probs=61.9
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccc-cccccccccCCCCCCcccchhhccc-c
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL-IGTVHDWCESFSTYPRTYDLLHAWK-V 359 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~-~~~~~~~~~~~~~y~~~~dl~h~~~-~ 359 (444)
..-..|+|+.++-|.++..|..... +|+-++- +..+...-+ .|+ +-..+.-.+.++ .|.+||+|.+.. .
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~ 115 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNEFDAVTMFFST 115 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSCEEEEEECSSG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc-cCCCccEEEEcCCc
Confidence 3446899999999999999876542 5666664 344444332 232 222222222333 468999997642 2
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+... ..-+...++-++-|+|+|||.+++.
T Consensus 116 ~~~~--~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 116 IMYF--DEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGGS--CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC--CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2211 1124678899999999999999984
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=94.66 E-value=0.005 Score=56.49 Aligned_cols=134 Identities=11% Similarity=0.015 Sum_probs=77.8
Q ss_pred eeEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHh----hcccc---c-cccccccCCCCCC-----cccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIY----DRGLI---G-TVHDWCESFSTYP-----RTYD 352 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~----~rg~~---~-~~~~~~~~~~~y~-----~~~d 352 (444)
-.+|+|+.++.|.++..|... +- -.|+-++. +..+.++- ..|+- - +..|..+.++..+ .+||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPG--ARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 468999999999999888652 21 24555553 23344322 23442 2 2234445455555 6899
Q ss_pred hhhccccccccccCCCChhhhhhhhcccccCCcEEEEecc-----HHHHHHHHHHHhhccceeEEeccccccCCCCCCCc
Q 013393 353 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 427 (444)
Q Consensus 353 l~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 427 (444)
+|.+++.... +. +...++-++ |.|||||.+++.|. .++++.+++ .=++++...-..-+ .....+
T Consensus 137 ~V~~d~~~~~-~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~---~~~~~d 205 (221)
T 3u81_A 137 MVFLDHWKDR-YL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTHYSSYLE---YMKVVD 205 (221)
T ss_dssp EEEECSCGGG-HH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH---CTTEEEEEEEEEET---TTTEEE
T ss_pred EEEEcCCccc-ch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh---CCCceEEEcccccc---cCCCCC
Confidence 9988875552 21 234566678 99999999999653 455555544 23465543210001 111246
Q ss_pred eEEEEEec
Q 013393 428 RVLIAKKK 435 (444)
Q Consensus 428 ~~l~~~k~ 435 (444)
.+.++.++
T Consensus 206 G~~~~~~~ 213 (221)
T 3u81_A 206 GLEKAIYQ 213 (221)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEEe
Confidence 78887764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.029 Score=55.53 Aligned_cols=143 Identities=16% Similarity=0.129 Sum_probs=84.5
Q ss_pred cCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHh----hcccc----ccccccccCCCCCCcccchhh
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY----DRGLI----GTVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~----~rg~~----~~~~~~~~~~~~y~~~~dl~h 355 (444)
....-..|+|+.++.|.++.+|.+. |-+ +++-+|-+..+...- +.|+- =+-+|..++ .|..||++.
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~ 253 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHL--RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP---LPVTADVVL 253 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSCCEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCC--EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCc---CCCCCCEEE
Confidence 3445678999999999999988643 321 233333233333222 23432 123444443 455699999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEecc--H--H-----------------------HHHHHHHHHhhccc
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK--S--S-----------------------IINYIRKFITALKW 408 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~--~--~-----------------------~~~~~~~~~~~~~w 408 (444)
+.+++..+... ....+|-++-|+|+|||.++|-|. . + ..+++++++..-.+
T Consensus 254 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 331 (374)
T 1qzz_A 254 LSFVLLNWSDE--DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 331 (374)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred EeccccCCCHH--HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence 99988743321 235799999999999999998765 2 1 24566777777777
Q ss_pred eeEEeccccccCCCCCCCceEEEEEecc
Q 013393 409 DGWLSEVEPRIDALSSSEERVLIAKKKL 436 (444)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~k~~ 436 (444)
+.... ... .+..-.....++.++|.=
T Consensus 332 ~~~~~-~~~-~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 332 ALASE-RTS-GSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEEE-EEE-CCSSCSSCEEEEEEEECC
T ss_pred ceEEE-EEC-CCCcccCCcEEEEEEECc
Confidence 75321 111 111000012788888863
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.033 Score=54.21 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=66.3
Q ss_pred cCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHhh----ccc----cccccccccCCCCCCcccchhh
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGL----IGTVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~~----rg~----~~~~~~~~~~~~~y~~~~dl~h 355 (444)
.... ..|+|+..+.|.++.+|.+. |-. .++-+|-+..+...-+ .|+ --+-+|..+ .+|.+||++.
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~ 238 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSA--RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ---EVPSNGDIYL 238 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTC--EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT---CCCSSCSEEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCC--EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC---CCCCCCCEEE
Confidence 3444 89999999999999988643 322 3444444444443322 232 223345544 3578899999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.+++..+... ....+|-++-|.|+|||.++|-|
T Consensus 239 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 239 LSRIIGDLDEA--ASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp EESCGGGCCHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EchhccCCCHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 99988744322 24689999999999999999864
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.015 Score=54.10 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=62.1
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc-----cccccccccCCCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-----IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~-----~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..|+|+.+|.|.+|..+.+... -+|+-++- +.-+...-++ |+ .|-..+....|+. .+||.|..+-+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D~~ 137 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEECCC
T ss_pred CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEeee
Confidence 5799999999999999977542 34555553 3444443332 22 2222333445553 78999977766
Q ss_pred ccccc-cCCCChhhhhhhhcccccCCcEEEEe
Q 013393 360 FSEIE-ERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 360 ~~~~~-~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.+... .+.-+...++-|+-|+|||||.+++-
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 55211 11223567888999999999999884
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.18 Score=49.12 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=48.6
Q ss_pred EEEEecCcc-CC-CCCCCccEEEeccccccccccH----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHH
Q 013393 93 TLGVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 166 (444)
Q Consensus 93 ~~~~~d~~~-lp-~~~~sFDlI~~~~~~l~~~~d~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l 166 (444)
.+..+|+.. ++ +++..||+|+.-. +.-..++ ..+|++++++++|||.|+--+ . -..+++-
T Consensus 169 ~l~~GDa~~~l~~l~~~~~Da~flDg--FsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt-------a-----ag~VRR~ 234 (308)
T 3vyw_A 169 KVLLGDARKRIKEVENFKADAVFHDA--FSPYKNPELWTLDFLSLIKERIDEKGYWVSYS-------S-----SLSVRKS 234 (308)
T ss_dssp EEEESCHHHHGGGCCSCCEEEEEECC--SCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-------C-----CHHHHHH
T ss_pred EEEechHHHHHhhhcccceeEEEeCC--CCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-------C-----cHHHHHH
Confidence 455566433 33 3445799999643 1112233 489999999999999998411 1 1367888
Q ss_pred HHhcCeEEEeeec
Q 013393 167 LKSMCWKIVSKKD 179 (444)
Q Consensus 167 ~~~~gf~~v~~~~ 179 (444)
++++||++....+
T Consensus 235 L~~aGF~V~k~~G 247 (308)
T 3vyw_A 235 LLTLGFKVGSSRE 247 (308)
T ss_dssp HHHTTCEEEEEEC
T ss_pred HHHCCCEEEecCC
Confidence 9999999877655
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.034 Score=54.80 Aligned_cols=111 Identities=16% Similarity=0.089 Sum_probs=65.8
Q ss_pred HHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccCCCchhH----Hhhccc---cccccccccCCCC
Q 013393 274 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFST 346 (444)
Q Consensus 274 ~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~~----~~~rg~---~~~~~~~~~~~~~ 346 (444)
..|...+.+.+....=..|+|+.+|.|.++..+...+. -.|+=++...-+.. +-+.|+ |-+.+.-.+.++
T Consensus 50 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 126 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH- 126 (340)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-
T ss_pred HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-
Confidence 34544443333333335899999999999888765542 13444443322332 223344 333443344443
Q ss_pred CC-cccchhhccccccccccCCCChhhhhhhhcccccCCcEEE
Q 013393 347 YP-RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI 388 (444)
Q Consensus 347 y~-~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~ 388 (444)
+| .+||+|-+..+...+. +.-.+..++-++.|+|+|||.++
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLL-FESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCSCEEEEEECCCBTTBT-TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcEEEEEEcCchhhcc-CHHHHHHHHHHHHhhcCCCcEEE
Confidence 34 7999999876422121 11246678999999999999998
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.13 Score=44.95 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=82.4
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccccccccccccCCCCCCcccchhhccccccccccC---
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER--- 366 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~--- 366 (444)
.|+|+.+|-|.++.+|...- +|+=++-. .-+.. ...+-=+-.|..++++ +.+||+|-++-.|......
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~--~~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCSIN--QESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTBC--GGGCSEEEECCCCBTTCCCTTT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhhcc--cCCCCEEEECCCCccCCccccc
Confidence 89999999999999998765 67666643 33333 2222223334444433 3899999998776522111
Q ss_pred --CCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHhhccceeEEeccccccCCCCCCCceEEEEEe
Q 013393 367 --GCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 434 (444)
Q Consensus 367 --~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 434 (444)
......++-++=|.| |||.+++-. .....+++.++++...|+...... .. .+.|++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~--~~----~~~e~~~~~~~ 161 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKV--RK----ILGETVYIIKG 161 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEE--EE----CSSSEEEEEEE
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEe--ec----cCCceEEEEEE
Confidence 122355666777777 999998854 445678888999988898753321 11 12467776553
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=52.71 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=75.3
Q ss_pred eEEEecccccchhhhhccCC-C-ceEEEeccccC-CCchhHHh----hcccc---ccc-cccccCCCCCC-----cccch
Q 013393 290 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIY----DRGLI---GTV-HDWCESFSTYP-----RTYDL 353 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~~~~----~rg~~---~~~-~~~~~~~~~y~-----~~~dl 353 (444)
..|+|+.++.|.++..|... | - -.|+-++. +..+...- ..|+- -+. .|..+.++..+ .+||+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKD--GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTT--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 48999999999999988764 2 1 23454543 23333322 22432 122 23334333333 78999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH------------HHHHHHHHHHhh----ccceeEEecccc
Q 013393 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFITA----LKWDGWLSEVEP 417 (444)
Q Consensus 354 ~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~------------~~~~~~~~~~~~----~~w~~~~~~~~~ 417 (444)
|..++-.. ....++-++=|.|+|||.+++.|.. .....++.+... -+|++...
T Consensus 144 v~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l---- 212 (225)
T 3tr6_A 144 IYIDADKA-------NTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILI---- 212 (225)
T ss_dssp EEECSCGG-------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE----
T ss_pred EEECCCHH-------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEE----
Confidence 98665322 3566788888999999999996543 122334444333 34665432
Q ss_pred ccCCCCCCCceEEEEEec
Q 013393 418 RIDALSSSEERVLIAKKK 435 (444)
Q Consensus 418 ~~~~~~~~~~~~l~~~k~ 435 (444)
|. .+.+++++|+
T Consensus 213 ---p~---~dG~~~~~k~ 224 (225)
T 3tr6_A 213 ---PI---GDGLTLARKK 224 (225)
T ss_dssp ---CS---TTCEEEEEEC
T ss_pred ---Ec---CCccEEEEEC
Confidence 22 4678998885
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.056 Score=52.20 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=56.7
Q ss_pred CcEEEEecCcc-CC-CCCCCccEEEeccccc---c----------------ccccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 91 PSTLGVLGTKR-LP-YPSRSFELAHCSRCRI---D----------------WLQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 91 ~~~~~~~d~~~-lp-~~~~sFDlI~~~~~~l---~----------------~~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
...+..+|..+ ++ +++++||+|+++--.. . +......++.++.|+|||||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 34566777544 33 4578999999974211 1 11112457889999999999999865532
Q ss_pred CC-CChhh----HHHHHHHHHHHHhcCeEEEeeecceeEeeccC
Q 013393 150 YA-HDPEN----RRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 188 (444)
Q Consensus 150 ~~-~~~~~----~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l 188 (444)
.. ..... ......+..++++.||.... ..+|.|+.
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~----~iiW~K~~ 140 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLN----PIIWHKHT 140 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEEE----EEEEECC-
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeeec----cEEEeCCC
Confidence 20 00000 01234677788899996653 45899874
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.039 Score=51.58 Aligned_cols=128 Identities=11% Similarity=0.098 Sum_probs=72.8
Q ss_pred eeEEEecccccchhhhhccCC-C-ceEEEeccccC-CCchh----HHhhcccc---cccc-ccccCCCCC-----Ccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLK----IIYDRGLI---GTVH-DWCESFSTY-----PRTYD 352 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~----~~~~rg~~---~~~~-~~~~~~~~y-----~~~~d 352 (444)
-++|+|+.++.|.++..|... | - -.|+-++. +..+. .+-..|+- -+.+ |-.+.++.. +.+||
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDD--GQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTT--CEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 358999999999998887642 1 1 12333332 22222 23333542 2222 333333333 47899
Q ss_pred hhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH------------HHHHHHHHHHhhc----cceeEEeccc
Q 013393 353 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFITAL----KWDGWLSEVE 416 (444)
Q Consensus 353 l~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~------------~~~~~~~~~~~~~----~w~~~~~~~~ 416 (444)
+|.++.-.. ....++-++-|+|||||.+++.|.. .....++++.+.+ ++++.+.
T Consensus 139 ~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--- 208 (242)
T 3r3h_A 139 FIFIDADKT-------NYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL--- 208 (242)
T ss_dssp EEEEESCGG-------GHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE---
T ss_pred EEEEcCChH-------HhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE---
Confidence 997766422 2456777888999999999995432 1223344444444 4554322
Q ss_pred cccCCCCCCCceEEEEEec
Q 013393 417 PRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 417 ~~~~~~~~~~~~~l~~~k~ 435 (444)
|. .+.+++++|+
T Consensus 209 ----p~---~dG~~~~~k~ 220 (242)
T 3r3h_A 209 ----AI---ADGMFLVQPI 220 (242)
T ss_dssp ----SS---SSCEEEEEEC
T ss_pred ----Ec---cCceEEEEEc
Confidence 22 4679999875
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.043 Score=49.79 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=74.6
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhh----ccc--cccccccccCCC--CCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL--IGTVHDWCESFS--TYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~----rg~--~~~~~~~~~~~~--~y~~~~dl~h~~~~ 359 (444)
..|+|+.+|-|.++.+|... |- .+|+-++- +.-+...-+ .|+ +-+++.=.+.++ .-+.+||+|.++..
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEccCcCHHHHHHHHHCCC--CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 36999999999999888642 21 25666664 344443322 343 222222222233 22578999987733
Q ss_pred ccc----cccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhccceeE
Q 013393 360 FSE----IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 360 ~~~----~~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~w~~~ 411 (444)
... -.+++-....++-++-|+|+|||.+++. |..+..+.+.+++....|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 177 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 177 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence 210 0112223467999999999999999887 466677888888877777764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.05 Score=53.55 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=74.7
Q ss_pred hccCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchh--HHhhccccc----cccccccCCCCCCcccchhh
Q 013393 283 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK--IIYDRGLIG----TVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 283 ~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~--~~~~rg~~~----~~~~~~~~~~~y~~~~dl~h 355 (444)
.+..+....|+|+..+.|.++.+|.+. |-. .++-.|-+..+. .+-..|+-+ +-+|..+ ..| +||++.
T Consensus 179 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~p-~~D~v~ 252 (348)
T 3lst_A 179 AGDFPATGTVADVGGGRGGFLLTVLREHPGL--QGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR---EVP-HADVHV 252 (348)
T ss_dssp HSCCCSSEEEEEETCTTSHHHHHHHHHCTTE--EEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT---CCC-CCSEEE
T ss_pred hCCccCCceEEEECCccCHHHHHHHHHCCCC--EEEEecCHHHhhcccccccCCCCCeEEEecCCCC---CCC-CCcEEE
Confidence 345567789999999999999988642 321 222222221111 001123322 2234333 456 999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEeccH-------------------------HHHHHHHHHHhhcccee
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-------------------------SIINYIRKFITALKWDG 410 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~-------------------------~~~~~~~~~~~~~~w~~ 410 (444)
+.+++..+... ....+|-++-|.|||||.++|-|.. ...++++++++.-.++.
T Consensus 253 ~~~vlh~~~d~--~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 330 (348)
T 3lst_A 253 LKRILHNWGDE--DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRL 330 (348)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEE
T ss_pred EehhccCCCHH--HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCce
Confidence 99988743221 2368999999999999999996521 12456677777777776
Q ss_pred E
Q 013393 411 W 411 (444)
Q Consensus 411 ~ 411 (444)
.
T Consensus 331 ~ 331 (348)
T 3lst_A 331 D 331 (348)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.06 Score=53.49 Aligned_cols=140 Identities=13% Similarity=0.161 Sum_probs=86.3
Q ss_pred hccCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhH----Hhhccccc----cccccccCCCCCCcccch
Q 013393 283 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKI----IYDRGLIG----TVHDWCESFSTYPRTYDL 353 (444)
Q Consensus 283 ~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~----~~~rg~~~----~~~~~~~~~~~y~~~~dl 353 (444)
.+.......|+|+.++.|.++.+|.+. |-. .++-.|-+..+.. +-+.|+-+ +-+|..++ +|..||+
T Consensus 197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~p~~~D~ 271 (369)
T 3gwz_A 197 AYDFSGAATAVDIGGGRGSLMAAVLDAFPGL--RGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET---IPDGADV 271 (369)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC---CCSSCSE
T ss_pred hCCCccCcEEEEeCCCccHHHHHHHHHCCCC--eEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC---CCCCceE
Confidence 345567789999999999999988643 211 2222333333332 22334422 23444444 4558999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH------------------------HHHHHHHHHHhhccce
Q 013393 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------------------SIINYIRKFITALKWD 409 (444)
Q Consensus 354 ~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~------------------------~~~~~~~~~~~~~~w~ 409 (444)
+-+.+++..+... ....+|-++-|.|+|||.++|-|.. -..++.+++++.-.++
T Consensus 272 v~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 349 (369)
T 3gwz_A 272 YLIKHVLHDWDDD--DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLR 349 (369)
T ss_dssp EEEESCGGGSCHH--HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEE
T ss_pred EEhhhhhccCCHH--HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCe
Confidence 9999998743221 2346899999999999999995421 1145677888877887
Q ss_pred eEEeccccccCCCCCCCceEEEEEec
Q 013393 410 GWLSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
.... .. ...+...++.|+|.
T Consensus 350 ~~~~-~~-----~~~~~~svie~~~a 369 (369)
T 3gwz_A 350 VERS-LP-----CGAGPVRIVEIRRA 369 (369)
T ss_dssp EEEE-EE-----CSSSSEEEEEEEEC
T ss_pred EEEE-EE-----CCCCCcEEEEEEeC
Confidence 6422 21 01124678888763
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.022 Score=55.91 Aligned_cols=139 Identities=10% Similarity=0.094 Sum_probs=86.0
Q ss_pred ccCCc-eeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHH----hhccccc----cccccccCCCCCCcccch
Q 013393 284 AQKNT-FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKII----YDRGLIG----TVHDWCESFSTYPRTYDL 353 (444)
Q Consensus 284 l~~~~-~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~----~~rg~~~----~~~~~~~~~~~y~~~~dl 353 (444)
+.... ...|+|+..+.|.++.+|.+. |- ..++-++-+..+... -+.|+-+ +-+|..+.-+..|..||+
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~ 251 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQ--LTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADV 251 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTT--CEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCC--CeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccE
Confidence 44445 789999999999999988642 32 123333334444332 2234422 233433321125788999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH-------H--------------------HHHHHHHHHhhc
Q 013393 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-------S--------------------IINYIRKFITAL 406 (444)
Q Consensus 354 ~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~-------~--------------------~~~~~~~~~~~~ 406 (444)
+.+.+++..+.. -....+|-++-|.|+|||.++|-|.. . ..+++++++..-
T Consensus 252 v~~~~vlh~~~~--~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (352)
T 3mcz_A 252 VMLNDCLHYFDA--REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDA 329 (352)
T ss_dssp EEEESCGGGSCH--HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT
T ss_pred EEEecccccCCH--HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC
Confidence 999999874432 13578999999999999999996520 0 134466666666
Q ss_pred cceeEEeccccccCCCCCCCceEEEEEec
Q 013393 407 KWDGWLSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 407 ~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
.++..... .+...+++++|+
T Consensus 330 Gf~~~~~~---------~g~~~l~~a~kp 349 (352)
T 3mcz_A 330 GLAVGERS---------IGRYTLLIGQRS 349 (352)
T ss_dssp TCEEEEEE---------ETTEEEEEEECC
T ss_pred CCceeeec---------cCceEEEEEecC
Confidence 67663211 124678999985
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.019 Score=53.02 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=60.3
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc----c-ccccc-ccc---cCCCCCCcccchhhcc-c
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----L-IGTVH-DWC---ESFSTYPRTYDLLHAW-K 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg----~-~~~~~-~~~---~~~~~y~~~~dl~h~~-~ 358 (444)
..|+|+.+|-|.++..|...+. -+|+=++. +.-+...-++. . +-+++ |+. .+|+ +.+||+|.++ .
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~V~~d~~ 137 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP--DGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC--TTCEEEEEECCC
T ss_pred CeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccC--CCceEEEEECCc
Confidence 5799999999999999977543 25555554 34444433332 1 11122 222 2343 4899999883 2
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
.++....+.-....++-|+-|+|||||.+++-+-.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 21211111112346799999999999999986533
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.098 Score=48.84 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=78.2
Q ss_pred eeEEEecccccchhhhhccCC-C-ceEEEeccccC-CCchhHHhhc----cccc----cccccccCCCCCCc--ccchhh
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYDR----GLIG----TVHDWCESFSTYPR--TYDLLH 355 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~~~~~r----g~~~----~~~~~~~~~~~y~~--~~dl~h 355 (444)
-..|+|+.++.|+++..|... | - -.|+-++- +..+..+-++ |+-. +..|..+.++..+. +||+|.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPAD--GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTT--CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 368999999999999888753 1 1 24555553 3444443332 4421 22344443444444 899998
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEeccH------------HHHHHHHHHHh----hccceeEEe-ccccc
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFIT----ALKWDGWLS-EVEPR 418 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~------------~~~~~~~~~~~----~~~w~~~~~-~~~~~ 418 (444)
++.-.. ....++-++=|+|||||.+++.|.. .....++++.. .-+|++... .+
T Consensus 142 ~d~~~~-------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--- 211 (248)
T 3tfw_A 142 IDADKP-------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV--- 211 (248)
T ss_dssp ECSCGG-------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC---
T ss_pred ECCchH-------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC---
Confidence 766322 2456788888999999999985432 12334444443 335665432 11
Q ss_pred cCCCCCCCceEEEEEec
Q 013393 419 IDALSSSEERVLIAKKK 435 (444)
Q Consensus 419 ~~~~~~~~~~~l~~~k~ 435 (444)
+ ..+.+.+.+++|+
T Consensus 212 -g--~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 212 -G--TKGWDGFTLAWVN 225 (248)
T ss_dssp -S--TTCSEEEEEEEEC
T ss_pred -C--CCCCCeeEEEEEe
Confidence 0 1124789999886
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.03 Score=56.67 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=70.2
Q ss_pred eeEEEecccc------cchhhhhccCC--CceEEEeccccCCCchhHHhhccccccccccccCCCCC------Ccccchh
Q 013393 289 FRNVMDMNSN------LGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTY------PRTYDLL 354 (444)
Q Consensus 289 ~rnvmDm~a~------~G~f~a~~~~~--~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~y------~~~~dl~ 354 (444)
-.+|+|+.++ -||.+..|... |- -.|+=+|-.... +....=|=+..-=++.+++- +.+||+|
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~--a~V~GVDiSp~m--~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR--GQIYGLDIMDKS--HVDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTT--CEEEEEESSCCG--GGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHH--hhcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 3689999999 57776666432 21 134444432111 11111111222122232222 3789999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEEec------------------cHHHHHHHHHHHhhcccee
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD------------------KSSIINYIRKFITALKWDG 410 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd------------------~~~~~~~~~~~~~~~~w~~ 410 (444)
.+++... . .+....|-|+=|+|||||.++|.| ...+++.+++++..++|+.
T Consensus 293 isdgsH~--~---~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~ 361 (419)
T 3sso_A 293 IDDGSHI--N---AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQE 361 (419)
T ss_dssp EECSCCC--H---HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGG
T ss_pred EECCccc--c---hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcccc
Confidence 9876422 1 236778999999999999999954 3468999999999999875
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.053 Score=49.28 Aligned_cols=93 Identities=13% Similarity=0.056 Sum_probs=58.4
Q ss_pred eEEEecccccchhhhhccCC-C-ceEEEeccccC-CCchhHHh----hccccc---cc-cccccCCCCCC----cccchh
Q 013393 290 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIY----DRGLIG---TV-HDWCESFSTYP----RTYDLL 354 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~~~~----~rg~~~---~~-~~~~~~~~~y~----~~~dl~ 354 (444)
..|+|+.++.|+++..|... | - ..|+-++- +..+..+- ..|+-. +. .|..+.++..+ .+||+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSG--GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSS--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 58999999999999988754 1 1 14555553 34444332 225422 22 23333222222 579999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..+...+ ....++-++-|+|||||.+++.|
T Consensus 138 ~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 138 FIDADKQ-------NNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EECSCGG-------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred EEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeC
Confidence 8776533 24577888999999999999854
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.096 Score=47.70 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=72.0
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHHh----hccc--cccc-cccccCCC--CCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGL--IGTV-HDWCESFS--TYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~~----~rg~--~~~~-~~~~~~~~--~y~~~~dl~h~~~ 358 (444)
..|+|+.+|.|.++.+|... |- .+|+=++-. .-+...- +.|+ +-+. .|..+ ++ .-+.++|.|++.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~- 115 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN- 115 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE-
T ss_pred ceEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE-
Confidence 36999999999999988642 32 256666643 3333322 2354 2222 23322 22 124789988653
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhcccee
Q 013393 359 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 410 (444)
Q Consensus 359 ~~~~~------~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~w~~ 410 (444)
|+.- .+++-....++-++-|+|+|||.+++. |..+..+.+...+....|+.
T Consensus 116 -~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~ 173 (213)
T 2fca_A 116 -FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL 173 (213)
T ss_dssp -SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred -CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 2211 122333578899999999999999886 56667777777776666654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=92.92 E-value=0.044 Score=50.06 Aligned_cols=90 Identities=13% Similarity=0.210 Sum_probs=58.0
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----c-ccccccccccCCCCCCcccchhhccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----G-LIGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g-~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
-..|+|+.+|.|.++..|...- -+|+-++- +..+...-++ | +-=+..|..+.++ -+.+||+|.+++.+..
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPT 146 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHH
Confidence 3489999999999999887643 35555553 3444443333 1 1112234444232 2478999999987763
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
+. -++-|+|+|||.+++-..
T Consensus 147 ~~----------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 147 LL----------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CC----------HHHHHTEEEEEEEEEEEC
T ss_pred HH----------HHHHHHcCCCcEEEEEEc
Confidence 22 378899999999998754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=92.87 E-value=0.038 Score=52.07 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=45.2
Q ss_pred cccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH----------------HHHHHHHHHHhhcccee
Q 013393 349 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDG 410 (444)
Q Consensus 349 ~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~----------------~~~~~~~~~~~~~~w~~ 410 (444)
.+||+|-++.++..+..+.=++..+|-+|-|+|+|||.+++.+.. -..+++.+++..-..++
T Consensus 155 ~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 155 PLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp CCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEE
Confidence 589999999998743222224678899999999999999998521 13557777777666655
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.079 Score=47.75 Aligned_cols=92 Identities=18% Similarity=0.088 Sum_probs=58.1
Q ss_pred eEEEecccccchhhhhccCC-C-ceEEEeccccC-CCchhHH----hhcccc---ccc-cccccCCCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKII----YDRGLI---GTV-HDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~~~----~~rg~~---~~~-~~~~~~~~~y~~~~dl~h~~~ 358 (444)
..|+|+.++.|.++..|... | - -+|+-++- +..+... -..|+- -+. .|..+.++..+. ||+|.++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISIS--SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 48999999999999888653 1 1 23444443 2333322 223442 222 234444455567 99997763
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
- ......++-++-|+|+|||.+++.|
T Consensus 135 ~-------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D-------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T-------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C-------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 1 2356788899999999999999965
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.22 Score=46.54 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=57.6
Q ss_pred eeEEEecccccchhhhhccCC--C-ceEEEeccccC----CCchhHHh----hccc---ccccc-c-c-ccCCCCCCccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRM----SARLKIIY----DRGL---IGTVH-D-W-CESFSTYPRTY 351 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~--~-~wv~~~~~~~~----~~~l~~~~----~rg~---~~~~~-~-~-~~~~~~y~~~~ 351 (444)
-..|+|+.++.|.++..|.+. | .=|.-|=+... |..+...- +.|+ +-+.+ | . .+..+.-+.+|
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 123 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF 123 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence 358999999999999888653 2 33333333221 22455432 2233 22222 2 2 12222234899
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 352 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 352 dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
|+|++.+++..... ...++-.+.++++|||.+++.+
T Consensus 124 D~v~~~~~l~~~~~----~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 124 DRVVLAHSLWYFAS----ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp SEEEEESCGGGSSC----HHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEEEEccchhhCCC----HHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999874432 3445555566666799999953
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.069 Score=51.76 Aligned_cols=99 Identities=22% Similarity=0.274 Sum_probs=63.7
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHh----hccccc----cccccccCCCCCCcccchhhcc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY----DRGLIG----TVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~----~rg~~~----~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..-..|+|+.++.|.++.++.+. |-. .++-++-+..+...- +.|+-+ +-+|..+. ..|..||++.+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA--EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC--eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEEc
Confidence 44568999999999999988653 322 344444333333222 224322 22333331 346679999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+++..+.. -+...+|-++-|+|+|||.++|-|
T Consensus 240 ~~l~~~~~--~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 240 NFLHHFDV--ATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp SCGGGSCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhccCCH--HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 98874421 135789999999999999988854
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.013 Score=51.24 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=61.7
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHH----hhcccc---c-cccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLI---G-TVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~----~~rg~~---~-~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.+|.|.++..+...+. -+|+-++-. ..+... -..|+- - +..|+.+.++..+.+||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 4799999999999988876543 245555542 333332 223331 1 1234444344456789999998776
Q ss_pred cccccCCCChhhhhhhhc--ccccCCcEEEEeccHH
Q 013393 361 SEIEERGCSFEDLLIEMD--RMLRPEGFVIIRDKSS 394 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~d--rilrp~g~~~~rd~~~ 394 (444)
.. .....++-.+- |+|+|||.+++.....
T Consensus 111 ~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 111 AK-----ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred Cc-----chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 41 12455555555 9999999999965443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=92.50 E-value=0.4 Score=42.91 Aligned_cols=136 Identities=13% Similarity=0.064 Sum_probs=69.6
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCCCchhHHhhccccccccccccCCCC-------CC----cccchhhcc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFST-------YP----RTYDLLHAW 357 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~~~~~rg~~~~~~~~~~~~~~-------y~----~~~dl~h~~ 357 (444)
-..|+|+.++.|+++..|.+... .|+=+|-....+ ..|+-=+-.|..+. ++ .+ .+||+|-++
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~~---~~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vlsd 98 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEMEE---IAGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVSD 98 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCCC---CTTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCEEEEEeecCCHHHHHHHHcCC---cEEEEecccccc---CCCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEecC
Confidence 36899999999999999987632 233333210000 01221122232221 11 11 378998876
Q ss_pred ccccccc-------cCCCChhhhhhhhcccccCCcEEEEec--cHHHHHHHHHHHhhccceeEEeccccccCCCCCCCce
Q 013393 358 KVFSEIE-------ERGCSFEDLLIEMDRMLRPEGFVIIRD--KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 428 (444)
Q Consensus 358 ~~~~~~~-------~~~c~~~~~~~e~drilrp~g~~~~rd--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 428 (444)
.-..... ......+.++-++-|+|||||.+++.- ..+ ...+...++.. ++. +....+... -+.+.|.
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~-~~~~~~~l~~~-F~~-v~~~kP~as-R~~s~E~ 174 (191)
T 3dou_A 99 AMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM-TNDFIAIWRKN-FSS-YKISKPPAS-RGSSSEI 174 (191)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH-HHHHHHHHGGG-EEE-EEEECC-------CCEE
T ss_pred CCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC-HHHHHHHHHHh-cCE-EEEECCCCc-cCCCceE
Confidence 5332000 000113567788899999999998742 222 34445555443 332 233333322 1235799
Q ss_pred EEEEEec
Q 013393 429 VLIAKKK 435 (444)
Q Consensus 429 ~l~~~k~ 435 (444)
.+||++.
T Consensus 175 y~v~~~~ 181 (191)
T 3dou_A 175 YIMFFGF 181 (191)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 9999763
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.065 Score=55.53 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=61.5
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccCCCchh----HHhhccc---ccccc-ccccCCCCCCcccchhhcccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLK----IIYDRGL---IGTVH-DWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~~~l~----~~~~rg~---~~~~~-~~~~~~~~y~~~~dl~h~~~~ 359 (444)
.-..|+|+.+|.|.++..+...+.. .|+-++....+. .+.+.|+ |-+.+ |+-+ + .+|..||+|-++.+
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~ 233 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPM 233 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCC
T ss_pred CCCEEEEecCcccHHHHHHHHcCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCc
Confidence 3458999999999999888765431 344444322222 2344465 33333 3333 2 35678999999877
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+..+.. -.+...+.++-|+|+|||.+++
T Consensus 234 ~~~~~~--e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 234 GYMLFN--ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHHTC--HHHHHHHHHGGGGEEEEEEEES
T ss_pred hHhcCc--HHHHHHHHHHHHhcCCCCEEEE
Confidence 553321 2366778899999999999984
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.049 Score=48.96 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=57.6
Q ss_pred ceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc--cccc-cccccCCCCCCcccchhhcccc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL--IGTV-HDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~--~~~~-~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
.-..|+|+.++.|.+++.|.... -+|+-++- +..+...-++ |+ +-+. .|..+.+. -+.+||+|.++..
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-ARAPFDAIIVTAA 152 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEESSB
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-cCCCccEEEEccc
Confidence 34589999999999999887642 34555553 2344433322 33 2222 23333222 2578999999987
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
+..+.. ++-|.|+|||.+++--.
T Consensus 153 ~~~~~~----------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 153 PPEIPT----------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp CSSCCT----------HHHHTEEEEEEEEEEEC
T ss_pred hhhhhH----------HHHHhcccCcEEEEEEc
Confidence 763321 57799999999998543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.026 Score=55.01 Aligned_cols=95 Identities=17% Similarity=0.123 Sum_probs=52.9
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-----CCchhHH--hhccc--cccccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-----SARLKII--YDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-----~~~l~~~--~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.++-|||+..|.+.. .|+-++. +..+..+ -..|. +-+... .+.+..-+.+||+|.++..+
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~ 158 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGE 158 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCC
T ss_pred CEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCcc
Confidence 589999999999998887752 2222221 2111100 00011 111111 12222225789999998766
Q ss_pred cccccC---CCChhhhhhhhcccccCCcEEEEe
Q 013393 361 SEIEER---GCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 361 ~~~~~~---~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+ .... .-....+|-++-|+|+|||.+++.
T Consensus 159 ~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 159 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred c-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4 1100 000114788899999999999984
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.17 Score=47.01 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=69.0
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHHhh----------ccc--ccccc-ccccCCC--CCCccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----------RGL--IGTVH-DWCESFS--TYPRTY 351 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~~~----------rg~--~~~~~-~~~~~~~--~y~~~~ 351 (444)
-..++|+.+|.|.|+..|... |-+ ||+=++-. .-+...-+ .|+ |-+.+ |.-+.++ .-+.++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~--~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDT--LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTS--EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 357999999999999998653 322 45555532 22322211 233 11222 2222233 225789
Q ss_pred chhhcccccccc------ccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhcc-cee
Q 013393 352 DLLHAWKVFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK-WDG 410 (444)
Q Consensus 352 dl~h~~~~~~~~------~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~-w~~ 410 (444)
|.|... |+.- .++|.....+|-|+-|+|+|||.+++. |..+..+.+.+.+..-. |+.
T Consensus 125 D~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~ 189 (235)
T 3ckk_A 125 TKMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFER 189 (235)
T ss_dssp EEEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred eEEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 988642 3311 133455578999999999999999885 77777777776665543 443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.13 Score=48.87 Aligned_cols=137 Identities=10% Similarity=0.104 Sum_probs=67.1
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC---CchhH-Hhhcccccc--ccccccCCCCCCcccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS---ARLKI-IYDRGLIGT--VHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~---~~l~~-~~~rg~~~~--~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..|+|..++-|||+..+... .|.-.-+-|.... +.++. .+..++.-+ -.|- +.++ +.+||+|-++..+..
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~-~~l~--~~~fD~V~sd~~~~~ 152 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDI-HTLP--VERTDVIMCDVGESS 152 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCT-TTSC--CCCCSEEEECCCCCC
T ss_pred CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCH-hHCC--CCCCcEEEEeCcccC
Confidence 57999999999998887664 2332233331000 00000 000011101 1121 2244 689999998755220
Q ss_pred ccc--CCCChhhhhhhhcccccCCc--EEEEe----ccHHHHHHHHHHHhhccceeEEeccccccCCCCCCCceEEEEEe
Q 013393 363 IEE--RGCSFEDLLIEMDRMLRPEG--FVIIR----DKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 434 (444)
Q Consensus 363 ~~~--~~c~~~~~~~e~drilrp~g--~~~~r----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 434 (444)
... +.-....+|-++.|+|+||| .+++. +..++++.++.+.+.+. .+.+. ..-+ -..+.|..+||.+
T Consensus 153 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~--k~~s--R~~s~E~y~v~~~ 227 (265)
T 2oxt_A 153 PKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVR--NPYS--RNSTHEMYFTSRA 227 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEEC--CTTS--CTTCCCEEEESSC
T ss_pred CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEE--Eecc--cCCCccEEEEecC
Confidence 000 00001126788999999999 88884 44534444444433221 22211 1111 1234687887754
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.042 Score=52.16 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=58.2
Q ss_pred EEEecccccchhhhhccCC---CceEEEeccccC-CCchhHHh----hccccc---cccccccCCCCCCcccchhhcccc
Q 013393 291 NVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIY----DRGLIG---TVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~---~~wv~~~~~~~~-~~~l~~~~----~rg~~~---~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
.|+|+.+|.|.++.+|... |-+ +|+=+|- +.-|...- +.|+-. ..+.=.+.++. ..||++-+..+
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~--~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~~~~ 148 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNFT 148 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSC--EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEEESC
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCC--EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccceeeee
Confidence 7999999999998877532 222 3444553 23343322 234322 22211223443 45999988777
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+..+.. -+...+|-||-|+|||||.+|+.|
T Consensus 149 l~~~~~--~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 149 LQFLEP--SERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp GGGSCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeecCc--hhHhHHHHHHHHHcCCCcEEEEEe
Confidence 653321 123568999999999999999965
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.04 Score=50.88 Aligned_cols=96 Identities=16% Similarity=0.017 Sum_probs=60.9
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhccc---cccc-cccccCCCC---CC--cccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL---IGTV-HDWCESFST---YP--RTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~rg~---~~~~-~~~~~~~~~---y~--~~~dl~h~~~~ 359 (444)
..|+|+.++.|.++..|...-. +|+-++-. .-+...-++-- +-.. .|..+ ++. ++ ..||+|.+..+
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLV-PEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC-HHHHHHHHHHHCSCEEEEESS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccc-cccccccccccCccEEEEcch
Confidence 4699999999999998865322 56666543 44444433321 1111 12222 111 11 24899999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.... .-+...+|-|+-|+|+|||.++|-|
T Consensus 134 ~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 134 FHHIP--VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp STTSC--GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhcCC--HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 87442 2357899999999999999988754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=92.02 E-value=0.046 Score=52.04 Aligned_cols=96 Identities=7% Similarity=-0.007 Sum_probs=63.0
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcccc-ccccccccC-C---CCCCcccchhhccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLI-GTVHDWCES-F---STYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~-~~~~~~~~~-~---~~y~~~~dl~h~~~~~~~ 362 (444)
-..|+|+.+|-|.++..|.+.. -.|+-++. +.-|...-++--- .+--+|.+. + ...+.+||+|-++.++.+
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~ 122 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINR 122 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGG
T ss_pred cCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHh
Confidence 3579999999999999887653 25666664 3445544333210 122333321 1 123578999999988764
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+.. -+...++-+|-|.| |||.+++.
T Consensus 123 ~~~--~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 123 FTT--EEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp SCH--HHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CCH--HHHHHHHHHHHHhC-cCcEEEEE
Confidence 321 24677899999999 99999985
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.086 Score=51.82 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=84.1
Q ss_pred cCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHh----hcccc----ccccccccCCCCCCcccchhh
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY----DRGLI----GTVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~----~rg~~----~~~~~~~~~~~~y~~~~dl~h 355 (444)
....-..|+|+.++.|.++.+|... |-+ .++-++-+..+...- +.|+- =+-+|..++ .|..||++-
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~ 254 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHV--SATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP---LPRKADAII 254 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSSCEEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCC--EEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC---CCCCccEEE
Confidence 3445678999999999999888643 322 233333344444322 23432 223455443 456799999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEeccH--------H------------------HHHHHHHHHhhccce
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS--------S------------------IINYIRKFITALKWD 409 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~--------~------------------~~~~~~~~~~~~~w~ 409 (444)
+.+++..+... ....+|-++-|.|+|||.++|-|.. . ..++++++++.-.++
T Consensus 255 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 332 (360)
T 1tw3_A 255 LSFVLLNWPDH--DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 332 (360)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred EcccccCCCHH--HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence 99988643221 2357899999999999999986543 1 135667777777777
Q ss_pred eEEeccccccCCCCCCCceEEEEEec
Q 013393 410 GWLSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
.... ... .++.......++.++|.
T Consensus 333 ~~~~-~~~-~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 333 VEEV-RQL-PSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEE-EEE-ECSSSSCEEEEEEEEEC
T ss_pred EEEE-EeC-CCCcccCccEEEEEEeC
Confidence 6321 111 11000001568888874
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.013 Score=53.10 Aligned_cols=116 Identities=9% Similarity=0.173 Sum_probs=73.0
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc-cc--------------cccccccccCCCCCC----c
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-GL--------------IGTVHDWCESFSTYP----R 349 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r-g~--------------~~~~~~~~~~~~~y~----~ 349 (444)
..|+|..+|-|.++..|.+.. -+|+=+|- +.-|....+| ++ .+-..=.|-.+...| .
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 479999999999999997653 25776664 3555555444 11 011111222333333 6
Q ss_pred ccchhhccccccccccCCCChhhhhhhhcccccCCcE--EEEeccH----------HHHHHHHHHHhhccceeE
Q 013393 350 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGF--VIIRDKS----------SIINYIRKFITALKWDGW 411 (444)
Q Consensus 350 ~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~--~~~rd~~----------~~~~~~~~~~~~~~w~~~ 411 (444)
+||+|-+.++|..+. ......++-||-|+|||||. ++.-+.. -..++++.++.. .|++.
T Consensus 101 ~fD~v~~~~~l~~l~--~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~ 171 (203)
T 1pjz_A 101 HCAAFYDRAAMIALP--ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVT 171 (203)
T ss_dssp SEEEEEEESCGGGSC--HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEE
T ss_pred CEEEEEECcchhhCC--HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEE
Confidence 899999888776432 12345688999999999998 3332211 135778888887 77764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.029 Score=53.88 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=35.0
Q ss_pred CCcccchhhcccccccc--ccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 347 YPRTYDLLHAWKVFSEI--EERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 347 y~~~~dl~h~~~~~~~~--~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.+.+||+|.+.+++..+ ......+..++-++-|+|||||.+|+..
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 46899999999987421 1112357889999999999999999963
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.075 Score=49.04 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=72.7
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHh----hccccc---cc-cccccCCCCCC-----cccchh
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGLIG---TV-HDWCESFSTYP-----RTYDLL 354 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~----~rg~~~---~~-~~~~~~~~~y~-----~~~dl~ 354 (444)
.+|+|+.++.|.++.+|... |- --.|+-++. +..+.+.- ..|+-. +. .|..+.++..| .+||+|
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPP-DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 48999999999998888653 10 013444443 23333322 224421 11 22222223222 689999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEEecc------------HHHHHHHHHHHhh----ccceeEEeccccc
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK------------SSIINYIRKFITA----LKWDGWLSEVEPR 418 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~------------~~~~~~~~~~~~~----~~w~~~~~~~~~~ 418 (444)
.++... -....++-++-|+|||||.+++.|. ......++++... -++++...
T Consensus 153 ~~d~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l----- 220 (232)
T 3cbg_A 153 FIDADK-------RNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVI----- 220 (232)
T ss_dssp EECSCG-------GGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEE-----
T ss_pred EECCCH-------HHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEE-----
Confidence 766532 2356788888999999999999532 1233444444433 35665432
Q ss_pred cCCCCCCCceEEEEEec
Q 013393 419 IDALSSSEERVLIAKKK 435 (444)
Q Consensus 419 ~~~~~~~~~~~l~~~k~ 435 (444)
|. .+.+.+++|+
T Consensus 221 --p~---~dG~~~~~~~ 232 (232)
T 3cbg_A 221 --PL---GDGMTLALKK 232 (232)
T ss_dssp --CS---BTCEEEEEEC
T ss_pred --Ec---CCeEEEEEeC
Confidence 12 3568888874
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.28 Score=45.05 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=74.0
Q ss_pred EEEecccccchhhhhccCC--CceEEEeccccCC-CchhH----Hhhcccc----cccc-ccccCCCCC-Ccccchhhcc
Q 013393 291 NVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKI----IYDRGLI----GTVH-DWCESFSTY-PRTYDLLHAW 357 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~~-~~l~~----~~~rg~~----~~~~-~~~~~~~~y-~~~~dl~h~~ 357 (444)
+|+|+.++.|.++..|... |- -.|+-++.. ..+.+ +-..|+- -+.+ |-.+.++.. +.+||+|-.+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADN--TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTT--SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CEEEEcCCchHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 8999999999988877541 11 134444432 23322 2222332 1111 222333334 5789999766
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEeccH------------HHHHHHHHHHhhccceeEE--eccccccCCCC
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFITALKWDGWL--SEVEPRIDALS 423 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~------------~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~ 423 (444)
.-.. ....++-++-|+|||||.+++.|.. .....++++...++++-++ ..+ |.
T Consensus 137 ~~~~-------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-----p~- 203 (221)
T 3dr5_A 137 VSPM-------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARL-----PL- 203 (221)
T ss_dssp CCTT-------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEE-----SS-
T ss_pred CcHH-------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEe-----ec-
Confidence 4222 3566788889999999999994321 2233455666666554221 122 33
Q ss_pred CCCceEEEEEecc
Q 013393 424 SSEERVLIAKKKL 436 (444)
Q Consensus 424 ~~~~~~l~~~k~~ 436 (444)
.+.+++++|.+
T Consensus 204 --gdGl~~~~~~~ 214 (221)
T 3dr5_A 204 --GAGLTVVTKAL 214 (221)
T ss_dssp --TTCEEEEEECC
T ss_pred --cchHHHHHHHH
Confidence 47799999975
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.23 Score=46.07 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=65.5
Q ss_pred eEEEecccccchhhhhccCC-----CceEEEeccccC-CCchhHHhhccc---cc-cccccccC--CCCCCc-ccchhhc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRM-SARLKIIYDRGL---IG-TVHDWCES--FSTYPR-TYDLLHA 356 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-----~~wv~~~~~~~~-~~~l~~~~~rg~---~~-~~~~~~~~--~~~y~~-~~dl~h~ 356 (444)
..|+|+.++.|+.++.|.+. |- -.|+-++- +.-+... |++ |= +..|..+. ++..+. +||+|+.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~--~~V~gvD~s~~~l~~a--~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGID--CQVIGIDRDLSRCQIP--ASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCC--CEEEEEESCCTTCCCC--GGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCC--CEEEEEeCChHHHHHH--hccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 58999999999999988642 21 13443432 2212111 122 11 12233332 222222 6999997
Q ss_pred cccccccccCCCChhhhhhhhcc-cccCCcEEEEeccHH-----HHHHHHHHHhhc--ccee
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDR-MLRPEGFVIIRDKSS-----IINYIRKFITAL--KWDG 410 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~dr-ilrp~g~~~~rd~~~-----~~~~~~~~~~~~--~w~~ 410 (444)
+.. + -....++-|+-| .|+|||.+++.|... --..+.++++.. +++.
T Consensus 159 d~~------~-~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA------H-ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS------C-SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred CCc------h-HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 653 1 257789999998 999999999976311 113567777766 5665
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.09 Score=49.51 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=73.4
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc-cc-------------------cccccccccCCCCCC
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-GL-------------------IGTVHDWCESFSTYP 348 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r-g~-------------------~~~~~~~~~~~~~y~ 348 (444)
..|+|..+|-|.++..|.+... +|+=+|-. .-+.....+ ++ -+-..=.|-.+...|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 4799999999999999987632 57777743 444443332 11 011111222233332
Q ss_pred ----cccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec---------c---HHHHHHHHHHHhhccceeE
Q 013393 349 ----RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD---------K---SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 349 ----~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd---------~---~~~~~~~~~~~~~~~w~~~ 411 (444)
.+||+|-+.++|..+. ......++-||-|+|||||.+++-. . .-..++++.++.. .|++.
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~--~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAIN--PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSC--GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred cccCCCEEEEEEhhhhhhCC--HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 7899999888887442 2346678999999999999986421 0 1124677888776 47764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.057 Score=52.44 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=73.1
Q ss_pred eEEEecccccchhhhhccC-CCceEEEeccccC-CCchhHHh----hccccccccccccCCCCC-Ccccchhhccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIY----DRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSE 362 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~~~~~~~~~~y-~~~~dl~h~~~~~~~ 362 (444)
..|+|+.+|-||++|.+.. .+- -.|+=++- +.-+...- +.|+ .-..-.|.....+ +.+||++....+-
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~-- 198 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA-- 198 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC--
T ss_pred CEEEEECCCccHHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc--
Confidence 5899999999998866532 121 24555553 34444322 3365 2111112211222 4899999865541
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEeccHHHHHH----H-HHHHhhccceeEEeccccccCCCCCCCceEEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINY----I-RKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~----~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 435 (444)
-+...++-|+-|.|||||.+++++....-.- + ..... .|+...... + ..+..+.+.+++|.
T Consensus 199 -----~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~-p----~~~v~N~vv~a~k~ 264 (298)
T 3fpf_A 199 -----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVL-P----SGKVNNTSVLVFKC 264 (298)
T ss_dssp -----SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEEC-C----CTTCCCEEEEEEEC
T ss_pred -----cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEEC-C----CCCcCcEEEEEEcc
Confidence 2467899999999999999999985332110 0 11222 566543222 1 12224678888874
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.044 Score=50.38 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=60.7
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc----cc---ccc-ccccccCCCCC--Ccccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL---IGT-VHDWCESFSTY--PRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r----g~---~~~-~~~~~~~~~~y--~~~~dl~h~~ 357 (444)
..|+|+.++.|.++..|... |- -+|+-++. +..+...-++ |+ |-+ ..|..+..+.. +.+||+|-++
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPE--ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 48999999999999888642 21 24555554 3444443333 43 222 22444432333 5789999876
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..++ ....++-++-|.|+|||.+++.|
T Consensus 134 ~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAKG-------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGGS-------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 6543 46788899999999999999964
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.29 E-value=0.3 Score=47.63 Aligned_cols=93 Identities=15% Similarity=0.263 Sum_probs=56.7
Q ss_pred cEEEEecCcc-CC-CCCCCccEEEecccc--c-----------cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCCh--
Q 013393 92 STLGVLGTKR-LP-YPSRSFELAHCSRCR--I-----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP-- 154 (444)
Q Consensus 92 ~~~~~~d~~~-lp-~~~~sFDlI~~~~~~--l-----------~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~-- 154 (444)
..+..+|... +. +++++||+|++.--. . .|.......+.++.++|+|||.+++.....+....
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 4455666432 33 457889999986310 0 12223467899999999999999997554321100
Q ss_pred hhHHHHHHHHHHHHhcCeEEEeeecceeEeeccC
Q 013393 155 ENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 188 (444)
Q Consensus 155 ~~~~~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l 188 (444)
.....+..+.++++..||.... ..+|+|+.
T Consensus 95 ~~~~~~~~i~~~~~~~Gf~~~~----~iiW~k~~ 124 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGFFLAE----DFYWFNPS 124 (323)
T ss_dssp ECCHHHHHHHHHHHTTCCEEEE----EEEEECSS
T ss_pred cccchHHHHHHHHHhCCCEEEE----EEEEecCC
Confidence 0012345566678889996553 45898764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.14 Score=47.28 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=72.5
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhh----ccccc---cc-cc----------------cccC
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGLIG---TV-HD----------------WCES 343 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~----rg~~~---~~-~~----------------~~~~ 343 (444)
..|+|+.++.|.++..|... |- .-+|+-++. +..+...-+ .|+-. +. .| |-+.
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPE-DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 48999999999999888642 10 013444443 233332222 23311 11 11 2222
Q ss_pred CCCCC-cccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEecc------------HHHHHHHHHHH----hhc
Q 013393 344 FSTYP-RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK------------SSIINYIRKFI----TAL 406 (444)
Q Consensus 344 ~~~y~-~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~------------~~~~~~~~~~~----~~~ 406 (444)
|++ + .+||+|.++.... ....++-++-|+|||||.+++.+. ......++... ..=
T Consensus 141 f~~-~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (239)
T 2hnk_A 141 FAF-GPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDS 212 (239)
T ss_dssp TCC-STTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred ccC-CCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCC
Confidence 322 2 6899998764322 255778899999999999999751 12333344433 344
Q ss_pred cceeEEeccccccCCCCCCCceEEEEEecc
Q 013393 407 KWDGWLSEVEPRIDALSSSEERVLIAKKKL 436 (444)
Q Consensus 407 ~w~~~~~~~~~~~~~~~~~~~~~l~~~k~~ 436 (444)
++++... |. .+.+.+++|++
T Consensus 213 ~~~~~~~-------p~---~~g~~~~~~~~ 232 (239)
T 2hnk_A 213 LVDVSLV-------PI---ADGVSLVRKRL 232 (239)
T ss_dssp TEEEEEE-------CS---TTCEEEEEECC
T ss_pred CeEEEEE-------Ec---CCceEeeeehh
Confidence 4555432 23 36699999876
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=91.16 E-value=1.6 Score=43.55 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=71.5
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC--------CCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--------PSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~--------~~~sFDlI~~~~~~ 118 (444)
++||+-||.|.++.-+.+++... +...|+.+...+..+.+.....+...|+.++.. ....+|+|+...--
T Consensus 4 ~vidLFsG~GGlslG~~~aG~~~--v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARAGFDV--KMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC 81 (376)
T ss_dssp EEEEETCTTSHHHHHHHHHTCEE--EEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred eEEEEccCcCHHHHHHHHCCCcE--EEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence 79999999999988887754221 123344445555555555566677777766531 23579999974310
Q ss_pred ccc-------cccHH-HHHH---HHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 119 IDW-------LQRDG-ILLL---ELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 119 l~~-------~~d~~-~~L~---ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
-.+ ..|.. .++. ++.+.++|.-+++=..+... .......++.+. .++++||.+
T Consensus 82 Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~--s~~~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 82 QGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIM--QEKYSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTT--CGGGHHHHHHHH-HHHHTTEEE
T ss_pred CCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhh--ccCcHHHHHHHH-HHHcCCCcc
Confidence 111 11222 3333 45556788644442333322 233345677888 889999987
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.12 Score=47.02 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=73.5
Q ss_pred eeEEEecccccchhhhhccCC-C-ceEEEeccccC-CCchhHHh----hccc---ccccc-ccccCCCCCC-----cccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIY----DRGL---IGTVH-DWCESFSTYP-----RTYD 352 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~~~~----~rg~---~~~~~-~~~~~~~~y~-----~~~d 352 (444)
-.+|+|+.++.|.++.+|... | - -+|+-++. +..+...- ..|+ |-+.+ |..+.++..+ .+||
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPAD--GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 358999999999999888653 1 1 23444443 33333322 2244 11111 2222222222 6899
Q ss_pred hhhccccccccccCCCChhhhhhhhcccccCCcEEEEecc------------HHHHHHHHHHHhh----ccceeEEeccc
Q 013393 353 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK------------SSIINYIRKFITA----LKWDGWLSEVE 416 (444)
Q Consensus 353 l~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~------------~~~~~~~~~~~~~----~~w~~~~~~~~ 416 (444)
+|.++.- ......++-++-|.|||||.+++.|. ......++++.+. =++++...
T Consensus 148 ~v~~d~~-------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--- 217 (229)
T 2avd_A 148 VAVVDAD-------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL--- 217 (229)
T ss_dssp EEEECSC-------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE---
T ss_pred EEEECCC-------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEE---
Confidence 9887653 23456788889999999999999542 2233444444433 34555322
Q ss_pred cccCCCCCCCceEEEEEec
Q 013393 417 PRIDALSSSEERVLIAKKK 435 (444)
Q Consensus 417 ~~~~~~~~~~~~~l~~~k~ 435 (444)
|. .+.+++++|.
T Consensus 218 ----p~---~dGl~~~~k~ 229 (229)
T 2avd_A 218 ----PL---GDGLTLAFKI 229 (229)
T ss_dssp ----CS---TTCEEEEEEC
T ss_pred ----ec---CCceEEEEEC
Confidence 22 3679998874
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.047 Score=48.41 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=61.6
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH----hhccc--ccccc-ccccCCCCC-Ccccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGL--IGTVH-DWCESFSTY-PRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~--~~~~~-~~~~~~~~y-~~~~dl~h~~~~~ 360 (444)
..|+|+.++.|.++.++...+.- .|+-++. +..+... -..|+ +-+.+ |..+....+ +.+||+|-++..|
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 47999999999998866544421 3555553 2333332 22343 22222 222221112 5799999988776
Q ss_pred cccccCCCChhhhhhhhcc--cccCCcEEEEeccH
Q 013393 361 SEIEERGCSFEDLLIEMDR--MLRPEGFVIIRDKS 393 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~dr--ilrp~g~~~~rd~~ 393 (444)
.... -....++-++-| +|+|||.+++....
T Consensus 124 ~~~~---~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 124 NVDS---ADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TSCH---HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred Ccch---hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 6221 247888999988 99999999997543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.5 Score=44.29 Aligned_cols=120 Identities=10% Similarity=0.087 Sum_probs=71.4
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHHh----h---ccc---cccccccccCC-C------CCC
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----D---RGL---IGTVHDWCESF-S------TYP 348 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~~----~---rg~---~~~~~~~~~~~-~------~y~ 348 (444)
.-..|+|+.++-|.++..|... |- .+|+=++-. ..+...- . .|+ +-+++.=.+.+ + .-+
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 3458999999999998777543 22 245544432 2222211 1 233 22333222222 1 115
Q ss_pred cccchhhcccccccc--------------ccCCCChhhhhhhhcccccCCcEEEEeccHHHHHHHHHHHhhcccee
Q 013393 349 RTYDLLHAWKVFSEI--------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 410 (444)
Q Consensus 349 ~~~dl~h~~~~~~~~--------------~~~~c~~~~~~~e~drilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~ 410 (444)
.+||+|-++--|... ....+.+..++-++-|+|+|||.+++--..+-+.++.+.++.- |..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 789999998444311 1224678999999999999999998766666667777777763 654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.13 Score=50.88 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=60.6
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHhh-ccccccccccccCCCCCCcccchhhccccccccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD-RGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~~-rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
.....|+|+.++.|.++.+|.+. |-. .++-.|-+..+...-+ .++--+-+|..++ .|. ||++.+.+++-.+.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~~~-~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLI--KGINFDLPQVIENAPPLSGIEHVGGDMFAS---VPQ-GDAMILKAVCHNWS 281 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHTTCCCCTTEEEEECCTTTC---CCC-EEEEEEESSGGGSC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC--eEEEeChHHHHHhhhhcCCCEEEeCCcccC---CCC-CCEEEEecccccCC
Confidence 45678999999999999998643 311 2222222211111111 1222233455443 455 99999999887443
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEec
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.. ....+|-++-|.|+|||.++|-|
T Consensus 282 d~--~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 DE--KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 23489999999999999999864
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.22 Score=45.56 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=63.8
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccCC-C----chhHHhhc-cccccccccccC--CCCCCcccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-A----RLKIIYDR-GLIGTVHDWCES--FSTYPRTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~~-~----~l~~~~~r-g~~~~~~~~~~~--~~~y~~~~dl~h~~~~ 359 (444)
..|+|+.++.|+++..|.+. |-. .|+-++-. . .+...-.+ ++--+..|..+. ++..+.+||+|.++..
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~--~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDG--LVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC--EEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence 47999999999999988653 211 23333322 1 12222221 222222333331 2323568999987543
Q ss_pred ccccccCCCC-hhhhhhhhcccccCCcEEEEeccHH----------HHHHHHHHHhhccceeE
Q 013393 360 FSEIEERGCS-FEDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALKWDGW 411 (444)
Q Consensus 360 ~~~~~~~~c~-~~~~~~e~drilrp~g~~~~rd~~~----------~~~~~~~~~~~~~w~~~ 411 (444)
. .+ ...++.++-|.|+|||.+++.-... ++.+-.+++..-.|+..
T Consensus 157 -~------~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 212 (233)
T 2ipx_A 157 -Q------PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQ 212 (233)
T ss_dssp -C------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEE
T ss_pred -C------ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceE
Confidence 1 12 2445677999999999999943332 12222466676677764
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.29 Score=46.64 Aligned_cols=140 Identities=16% Similarity=0.078 Sum_probs=77.0
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc-----cc-----------ccccc-ccccCCCCCCcc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-----GL-----------IGTVH-DWCESFSTYPRT 350 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r-----g~-----------~~~~~-~~~~~~~~y~~~ 350 (444)
-.+|+|+.+|-|+++..+...+. .+|+=++- +.-+.+.-++ |+ +-+.+ |-.+-... +.+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 46899999999999999887643 34444443 2222222111 22 11111 21111222 688
Q ss_pred cchhhcccccccccc-CCCChhhhhhhhcccccCCcEEEEec-----cHHHHHHHHHHHhhccceeEEeccccccCCCCC
Q 013393 351 YDLLHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSS 424 (444)
Q Consensus 351 ~dl~h~~~~~~~~~~-~~c~~~~~~~e~drilrp~g~~~~rd-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 424 (444)
||+|-++.... ... ..--...++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+...... -|.-.
T Consensus 153 fD~Ii~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~---vP~~~ 228 (281)
T 1mjf_A 153 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFP---VIGYA 228 (281)
T ss_dssp EEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEEC---CTTSS
T ss_pred eeEEEECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEe---cCCCC
Confidence 99999865422 111 00012567889999999999999962 3455555555555443344322111 11112
Q ss_pred CCceEEEEEec
Q 013393 425 SEERVLIAKKK 435 (444)
Q Consensus 425 ~~~~~l~~~k~ 435 (444)
+.-.+++|.|+
T Consensus 229 g~~~~~~as~~ 239 (281)
T 1mjf_A 229 SPWAFLVGVKG 239 (281)
T ss_dssp SSEEEEEEEES
T ss_pred ceEEEEEeeCC
Confidence 34678899886
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=90.46 E-value=1.1 Score=43.92 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=69.5
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC---CCCCccEEEeccccccc--
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRIDW-- 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~---~~~sFDlI~~~~~~l~~-- 121 (444)
+|||+-||.|.++..+.++++..--+...|+.+.+++..+.+.....+...|+..+.. +...+|+|+...---.+
T Consensus 4 ~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS~ 83 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTR 83 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC------
T ss_pred eEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchhh
Confidence 7999999999999888775421111223344555666666665555566777766541 11258999975310111
Q ss_pred ------cccHH-HHHH---HHHhhcC--CCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 122 ------LQRDG-ILLL---ELDRLLR--PGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 122 ------~~d~~-~~L~---ei~rvLk--PGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
..|.. .++. ++.+.++ |--+++=..+... ....+..+.+.+++.||.+...
T Consensus 84 ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~-----~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T 1g55_A 84 IGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFE-----VSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp ------------CHHHHHHHHGGGCSSCCSEEEEEEETTGG-----GSHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCcccc-----CHHHHHHHHHHHHHCCCeeEEE
Confidence 11211 2444 4444556 6643331222211 1245778888889999976543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=90.38 E-value=0.18 Score=49.58 Aligned_cols=101 Identities=15% Similarity=0.296 Sum_probs=64.1
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHhh----ccccc----cccccccCCCCCCcccchh
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLL 354 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~~----rg~~~----~~~~~~~~~~~y~~~~dl~ 354 (444)
+.......|+|+.++.|.++.+|.+. |-. +|+-+|-+..+...-+ .|+-+ +-+|..+. .+|. +|++
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v 260 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAV 260 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCTTC--EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEE
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCC--eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEE
Confidence 34456679999999999999998643 311 2333333444443332 25422 22344332 2333 4999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.+..++..+.. -....+|-++-|+|+|||.++|-|
T Consensus 261 ~~~~vlh~~~d--~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 261 LFCRILYSANE--QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEESCGGGSCH--HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEechhccCCH--HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99998874422 136788999999999999998865
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=0.2 Score=46.18 Aligned_cols=98 Identities=16% Similarity=0.080 Sum_probs=54.2
Q ss_pred eEEEecccccchhhhhccC-CCceEEEeccccCC-Cch-hH-------Hhhccccc--cccccccCCCC-CCcccchhhc
Q 013393 290 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARL-KI-------IYDRGLIG--TVHDWCESFST-YPRTYDLLHA 356 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l-~~-------~~~rg~~~--~~~~~~~~~~~-y~~~~dl~h~ 356 (444)
..|+|+.+|.|.++..|.. .|- .+|+=+|.. ..+ .+ +..+|+-. ..+.-.+.++. +.-.+|.++.
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~--~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQN--TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTT--EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 5799999999999999872 343 245555543 444 22 12345522 22222333321 1134444443
Q ss_pred ccccccc-ccCCCChhhhhhhhcccccCCcEEEE
Q 013393 357 WKVFSEI-EERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 357 ~~~~~~~-~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
..-+... ...+-+...++-|+-|+|||||.++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 3211110 01112345689999999999999999
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.06 E-value=0.16 Score=44.76 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=28.8
Q ss_pred cccchhhccccccccccC-------CCChhhhhhhhcccccCCcEEEEec
Q 013393 349 RTYDLLHAWKVFSEIEER-------GCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 349 ~~~dl~h~~~~~~~~~~~-------~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++||+|-++..+.....+ ......++-|+-|+|||||.+++.+
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 589999887644310000 0011477889999999999999973
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=89.85 E-value=0.14 Score=49.63 Aligned_cols=101 Identities=9% Similarity=0.045 Sum_probs=60.9
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----ccc------c-cc-cccc------cCCC--CC
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLI------G-TV-HDWC------ESFS--TY 347 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~~------~-~~-~~~~------~~~~--~y 347 (444)
-..|+|+.+|-|+.+..+.....+ +|+=+|- +.-|...-+| |+- . .| ...+ +.++ .-
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 357999999999977765544432 5666664 3555544433 220 0 01 1112 2221 12
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
+.+||+|-+...+-..... -....+|-|+-|+|||||.+++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~-~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHP-RHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCST-TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4899999876654311111 1357899999999999999998643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=0.25 Score=47.73 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=77.1
Q ss_pred ceeEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHHhhc------cc----cccc-cccccCCCC-CCcccch
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------GL----IGTV-HDWCESFST-YPRTYDL 353 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~~~r------g~----~~~~-~~~~~~~~~-y~~~~dl 353 (444)
.-.+|+|+.+|-|+++..+.+. ++ .+|+=++-. .-+.+.-++ ++ +-+. .|..+-... -+.+||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 3468999999999999998765 32 234333321 222221111 11 1111 222221111 2678999
Q ss_pred hhcccccccccc-CCCChhhhhhhhcccccCCcEEEEecc-----HHHHHHHHHHHhhccce-eEEeccccccCCCCCCC
Q 013393 354 LHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWD-GWLSEVEPRIDALSSSE 426 (444)
Q Consensus 354 ~h~~~~~~~~~~-~~c~~~~~~~e~drilrp~g~~~~rd~-----~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~ 426 (444)
|-++.... ... ...--...+-++-|+|+|||.+++... .....++.+.++...+. +...... -.....+.
T Consensus 173 Ii~d~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~--vP~yp~g~ 249 (304)
T 3bwc_A 173 VIIDTTDP-AGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMH--VPTYPCGS 249 (304)
T ss_dssp EEEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECC--CTTSTTSC
T ss_pred EEECCCCc-cccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEee--cccccCcc
Confidence 99865432 111 001115778899999999999999532 24566777777766554 3222111 11111234
Q ss_pred ceEEEEEec
Q 013393 427 ERVLIAKKK 435 (444)
Q Consensus 427 ~~~l~~~k~ 435 (444)
-.+++|.|+
T Consensus 250 w~f~~as~~ 258 (304)
T 3bwc_A 250 IGTLVCSKK 258 (304)
T ss_dssp CEEEEEESS
T ss_pred eEEEEEeCC
Confidence 568889886
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=89.75 E-value=0.23 Score=46.36 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=55.5
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccc-cccccccccCCCCCCcccchhhcccccccccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
-..|+|+.+|-|.++..|... |-. +|+-++- +.-+...-+++- +-....=-+.++.-+.+||+|.+...
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~------ 157 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEI--TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------ 157 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC------
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC--eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC------
Confidence 347999999999999888654 221 3444443 344444444431 11111111233433478999987543
Q ss_pred CCCChhhhhhhhcccccCCcEEEEec
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
...+-|+-|+|||||.+++-+
T Consensus 158 -----~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 158 -----PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp -----CCCHHHHHHHEEEEEEEEEEE
T ss_pred -----hhhHHHHHHhcCCCcEEEEEE
Confidence 124789999999999998864
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=89.71 E-value=0.043 Score=47.22 Aligned_cols=95 Identities=9% Similarity=0.142 Sum_probs=56.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHh----hccc-cccc-cccccCCCCCC---cccchhhcccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL-IGTV-HDWCESFSTYP---RTYDLLHAWKV 359 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~----~rg~-~~~~-~~~~~~~~~y~---~~~dl~h~~~~ 359 (444)
..|+|+.++.|.++..+..... +|+-++.. ..+...- ..|+ +-++ .|..+..+..+ .+||+|.++..
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 4799999999999988865421 25555542 3333222 2233 1122 22333222222 27999999887
Q ss_pred ccccccCCCChhhhhhhhc--ccccCCcEEEEeccH
Q 013393 360 FSEIEERGCSFEDLLIEMD--RMLRPEGFVIIRDKS 393 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~d--rilrp~g~~~~rd~~ 393 (444)
|. . ....++-++- |+|+|||.+++....
T Consensus 120 ~~---~---~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 120 YA---M---DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TT---S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred Cc---h---hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 75 1 2445555565 999999999986543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.68 E-value=1.4 Score=48.45 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=66.0
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhh----------ccc--cccccccccCCCCCCcccchhh
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----------RGL--IGTVHDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~----------rg~--~~~~~~~~~~~~~y~~~~dl~h 355 (444)
-..|+|+..|.|.++.+|....--.-+|+=+|-. .-|...-+ .|+ |-+++.=-+.++..+.+||+|.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 4579999999999999998753111245555532 33443322 244 3344444455666679999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 356 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 356 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+..++.++... ....++-|+-|+|||| .+||-
T Consensus 802 ~~eVLeHL~dp--~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 802 CLEVIEHMEED--QACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTTCCS-EEEEE
T ss_pred EeCchhhCChH--HHHHHHHHHHHHcCCC-EEEEE
Confidence 99999865421 2445788999999999 77774
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=89.60 E-value=0.25 Score=45.81 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=65.1
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHHhhc------------ccccc---ccccccCCC--CCCcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------------GLIGT---VHDWCESFS--TYPRT 350 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~~~r------------g~~~~---~~~~~~~~~--~y~~~ 350 (444)
..|+|+.+|.|+|+..|... |- .+|+-++.. .-+..+-++ |+-.+ -.|..+.++ .-+.+
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE--DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT--SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC--CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 57999999999999887642 21 256666633 333332221 44221 122222222 11356
Q ss_pred cchhhccccccccc------cCCCChhhhhhhhcccccCCcEEEE-eccHHHHHHHHHHHhhcc
Q 013393 351 YDLLHAWKVFSEIE------ERGCSFEDLLIEMDRMLRPEGFVII-RDKSSIINYIRKFITALK 407 (444)
Q Consensus 351 ~dl~h~~~~~~~~~------~~~c~~~~~~~e~drilrp~g~~~~-rd~~~~~~~~~~~~~~~~ 407 (444)
+|.+... |+... +++--...++-++-|+|+|||.+++ -|..+..+.+.+.+..-.
T Consensus 129 ~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 190 (246)
T 2vdv_E 129 LSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190 (246)
T ss_dssp EEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred cCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence 6766421 22111 1222236899999999999999988 477766676766655443
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=89.53 E-value=0.33 Score=43.70 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=68.8
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHHh--------hccc--cccccccccCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY--------DRGL--IGTVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~~--------~rg~--~~~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
..|+|+.+|.|.++..|... |- -+|+-++-. .-|..+. .+|+ +-..+.-.+.++.-+.+ |.+.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~-- 103 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPS--RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH-- 103 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTT--EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE--
T ss_pred CEEEEecCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE--
Confidence 47999999999999988753 22 245555543 4344321 3443 22233333445544445 7666
Q ss_pred cccc--ccc-cCCCChhhhhhhhcccccCCcEEEEec------------------c-HHHHHHHHHHHhhccceeE
Q 013393 358 KVFS--EIE-ERGCSFEDLLIEMDRMLRPEGFVIIRD------------------K-SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 358 ~~~~--~~~-~~~c~~~~~~~e~drilrp~g~~~~rd------------------~-~~~~~~~~~~~~~~~w~~~ 411 (444)
-+|+ ... .+.-+...++-|+-|+|||||.+++.. . ..+.+.++..+..-.|++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 2232 000 000112788999999999999999942 1 2233447788888888764
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=89.36 E-value=0.13 Score=46.24 Aligned_cols=99 Identities=8% Similarity=0.137 Sum_probs=60.4
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhh----ccc----ccccc-ccccCCCCC-Ccc-cchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL----IGTVH-DWCESFSTY-PRT-YDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~----rg~----~~~~~-~~~~~~~~y-~~~-~dl~h~~ 357 (444)
..|+|+.+|.|+++..+..... -.|+=++.. ..+...-+ .|+ +-+++ |..+..+.. +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 3799999999999886443321 245555543 44443222 233 22222 222222222 468 9999888
Q ss_pred ccccccccCCCChhhhhhhh--cccccCCcEEEEeccHHH
Q 013393 358 KVFSEIEERGCSFEDLLIEM--DRMLRPEGFVIIRDKSSI 395 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~--drilrp~g~~~~rd~~~~ 395 (444)
..|. . -....++-++ -|+|+|||.+++......
T Consensus 133 ~~~~-~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 133 PPFH-F----NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCSS-S----CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCC-C----ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 7764 1 2356777777 789999999999766553
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=0.022 Score=52.56 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=60.2
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHH----hhccc---ccccc-ccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGL---IGTVH-DWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~----~~rg~---~~~~~-~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.++-|+++..|.... .+|+=++- +..+... -..|+ +-+.+ |..+ ++ -+.+||+|.++..|
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCCC
T ss_pred CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCCc
Confidence 479999999999999997653 35555553 2333322 22233 22222 3322 22 35799999999888
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.... .....+.|+-|+|+|||.+++..
T Consensus 155 ~~~~----~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPD----YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGG----GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcc----hhhhHHHHHHhhcCCcceeHHHH
Confidence 7322 13336779999999999988765
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=89.19 E-value=0.11 Score=47.22 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=53.0
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-Cc----hhHHhhc-cccccccccccC--CCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-AR----LKIIYDR-GLIGTVHDWCES--FSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~----l~~~~~r-g~~~~~~~~~~~--~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.+|.|.++..|.+. +- -.|+-++-. .- +...-.+ ++.-+..|-.+. +...+.+||++-++-
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~--~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~-- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDE--GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI-- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTT--SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC--
T ss_pred CEEEEECCcCCHHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec--
Confidence 37999999999998876542 10 134444432 11 1111112 122223344332 123458999998762
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
. .+ -....++-|+-|+|||||.+++-
T Consensus 135 ~---~~-~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 A---QK-NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp C---ST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---Ch-hHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 11 12334588999999999999884
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.04 E-value=0.47 Score=43.40 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=66.8
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc---cc-cccccccCCCCCCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL---IG-TVHDWCESFSTYPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~---~~-~~~~~~~~~~~y~~~~dl~h~~~~~ 360 (444)
..|+|+.++.|.++.++... ..+|+-++- +..+...-++ |+ +- +..|..+.+. -+.+||++-++-
T Consensus 93 ~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV-PEGIFHAAFVDV-- 166 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC-CTTCBSEEEECS--
T ss_pred CEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc-CCCcccEEEECC--
Confidence 47999999999999888754 235666664 3445444333 43 11 2234444330 136799876521
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhc
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITAL 406 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~ 406 (444)
-+...++-++-|+|+|||.+++-.. .+-+.++...++..
T Consensus 167 -------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 167 -------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp -------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred -------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 1356788899999999999988666 45666666666554
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=88.85 E-value=0.32 Score=46.11 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=63.5
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc--cccccccccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
..|+|+.++.|+|+..+... + --.|+-++. +.-+... -..|+ +-+++.=++.++. +.+||++-++...
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~--~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSK--PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC--CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-
T ss_pred CEEEEecCcCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-
Confidence 47999999999998877643 2 012333332 2222221 12232 1122222233322 6789998665432
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEeccH------HHHHH-HHHHHhhccceeE
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------SIINY-IRKFITALKWDGW 411 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~------~~~~~-~~~~~~~~~w~~~ 411 (444)
....++.++-|.|+|||.+++-+.. +...+ ++.+...+.+++.
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 4677888999999999999996553 23444 4444444545543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=0.14 Score=46.50 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=53.2
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhh----ccc-------cc-cccccccCCCCCCcccchh
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYD----RGL-------IG-TVHDWCESFSTYPRTYDLL 354 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~----rg~-------~~-~~~~~~~~~~~y~~~~dl~ 354 (444)
..|+|+.++-|++++.|... +- -+|+-++- +.-+...-+ .|+ +- +..|..+.+. -+.+||+|
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~i 155 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCT--GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDAI 155 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCEE
Confidence 48999999999999888642 11 13444443 233332221 121 11 2234433322 24689999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 355 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 355 h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+++..+. .++-++-|+|+|||.+++--
T Consensus 156 ~~~~~~~----------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 156 HVGAAAP----------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EECSBBS----------SCCHHHHHTEEEEEEEEEEE
T ss_pred EECCchH----------HHHHHHHHhcCCCcEEEEEE
Confidence 9887654 23457789999999999853
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=88.67 E-value=0.27 Score=45.46 Aligned_cols=94 Identities=9% Similarity=0.069 Sum_probs=57.2
Q ss_pred eeEEEecccccchhhhhccCC-C-ceEEEeccccC-CCchhHH----hhcccc---ccc-cccccCCCCC------Cccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKII----YDRGLI---GTV-HDWCESFSTY------PRTY 351 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~~~----~~rg~~---~~~-~~~~~~~~~y------~~~~ 351 (444)
-++|+|+.++.|+.+..|... | - -.|+-++- +..+.+. -..|+- -+. .|..+.++.. +.+|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDD--GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 458999999999988877532 1 1 23444443 2333322 233542 111 2344433333 4789
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 352 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 352 dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
|+|-.+.--+ ....++-++-|.|||||.+++.+
T Consensus 149 D~I~~d~~~~-------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDADKP-------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEec
Confidence 9997764211 35677888889999999999965
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=88.53 E-value=0.27 Score=45.47 Aligned_cols=106 Identities=14% Similarity=0.188 Sum_probs=69.8
Q ss_pred eeEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhh----ccccc----cccccccCCCCCCcccchhhcc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~----rg~~~----~~~~~~~~~~~y~~~~dl~h~~ 357 (444)
-..|+|+.++-|+++.+|... |- ..|+-++- +..+...-+ .|+-. ...|..+.|+. .+||++-++
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~v~~~ 169 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPE--GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--ENVDHVILD 169 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC--CSEEEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHHhCCC--eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC--CCcCEEEEC
Confidence 347999999999999988653 11 13444443 244443333 25422 34566776653 679998653
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec-cHHHHHHHHHHHhhcc
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALK 407 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd-~~~~~~~~~~~~~~~~ 407 (444)
. .+...++-++-|+|+|||.+++-. ..+-+.++.+.++...
T Consensus 170 -----~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 170 -----L----PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp -----S----SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred -----C----CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 1 134678999999999999998764 4566777777777665
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=0.68 Score=44.47 Aligned_cols=143 Identities=10% Similarity=0.033 Sum_probs=76.3
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhh------ccc----cccc-cccccCCCCCCcccchhh
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD------RGL----IGTV-HDWCESFSTYPRTYDLLH 355 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~------rg~----~~~~-~~~~~~~~~y~~~~dl~h 355 (444)
-.+|+|+.+|-|+++..+... ++ .+|+=++- +.-+.+.-+ .|+ +-+. .|..+..+..+.+||+|-
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 378999999999999999876 43 24444443 222322211 121 1111 122222233468899998
Q ss_pred ccccccc-ccc-CCCChhhhhhhhcccccCCcEEEEec-----cHHHHHHHHHHHhhccceeEEeccccccCCCCCCCce
Q 013393 356 AWKVFSE-IEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 428 (444)
Q Consensus 356 ~~~~~~~-~~~-~~c~~~~~~~e~drilrp~g~~~~rd-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 428 (444)
++. +.. ... ..-....++-++-|.|+|||.+++.- ..+.+.++.+.+++.--.+......- .....+...
T Consensus 169 ~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~v--p~~p~g~~~ 245 (296)
T 1inl_A 169 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFM--TTYPSGMWS 245 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEEC--TTSTTSEEE
T ss_pred EcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeec--CccCCCceE
Confidence 753 221 100 00112677889999999999999962 23444454444444433443322110 011123456
Q ss_pred EEEEEecc
Q 013393 429 VLIAKKKL 436 (444)
Q Consensus 429 ~l~~~k~~ 436 (444)
+++|.|++
T Consensus 246 f~~as~~~ 253 (296)
T 1inl_A 246 YTFASKGI 253 (296)
T ss_dssp EEEEESSC
T ss_pred EEEecCCC
Confidence 88999874
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.36 E-value=0.93 Score=41.64 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=66.0
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhhc-----cc--cc-cccccccC-CCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR-----GL--IG-TVHDWCES-FSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~r-----g~--~~-~~~~~~~~-~~~y~~~~dl~h~~ 357 (444)
..|+|+.++.|.++.+|... |- -+|+-++. +..+...-++ |. +- ...|..+. |+ +.+||++-++
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~--~~~~D~v~~~ 173 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEK--GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE--EAAYDGVALD 173 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC--TTCEEEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC--CCCcCEEEEC
Confidence 48999999999999888653 11 14444553 3444443333 41 11 22344443 33 2689988752
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEeccH-HHHHHHHHHHhhccce
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWD 409 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~-~~~~~~~~~~~~~~w~ 409 (444)
. -+...++-++-|+|+|||.+++-+.. +-+.++.+.++...|.
T Consensus 174 -----~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 174 -----L----MEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp -----S----SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred -----C----cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 1 13457899999999999999886654 3556666666555444
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=88.16 E-value=3.2 Score=40.17 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=60.7
Q ss_pred CCeEEEECCCcchHHHHHhh-CCceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCccCCCC----CC----CccE
Q 013393 45 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYP----SR----SFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~-~~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~lp~~----~~----sFDl 111 (444)
++.|+++|||-=..+..+.. ..+.-+++.-.++-....+.-.+. ..+..+..+|..+ .+. .. +--.
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 35799999998887777762 233344443223222222222221 2234555566544 210 11 1235
Q ss_pred EEeccccccccccH--HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 112 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 112 I~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++...++++|+++. ..+++.+...+.||+++++....
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 66677789887654 37899999999999999997644
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=88.10 E-value=0.37 Score=44.87 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=51.4
Q ss_pred eEEEecccccchhhhhccCC---CceEEEeccccCC-Cc----hhHHhhc-cccccccccccCC--CCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-AR----LKIIYDR-GLIGTVHDWCESF--STYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~---~~wv~~~~~~~~~-~~----l~~~~~r-g~~~~~~~~~~~~--~~y~~~~dl~h~~~ 358 (444)
..|+|+.++-|++++.|.+. .- .|+-++-. .- +...-+| .+.-+..|-.++. ...+.+||+|.++.
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence 57999999999999877542 11 23333322 11 1122222 2333344443321 11245788887663
Q ss_pred cccccccCCCChhhhhh-hhcccccCCcEEEEe
Q 013393 359 VFSEIEERGCSFEDLLI-EMDRMLRPEGFVIIR 390 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~-e~drilrp~g~~~~r 390 (444)
-+ .+...+++ .+.|.|+|||.+++-
T Consensus 155 a~-------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 155 AQ-------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp CC-------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CC-------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 22 34555665 456699999999874
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=88.08 E-value=0.97 Score=42.84 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=78.1
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhc------cc----ccccc-ccccCCCCCCcccch
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR------GL----IGTVH-DWCESFSTYPRTYDL 353 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~r------g~----~~~~~-~~~~~~~~y~~~~dl 353 (444)
++-++|+|+.+|-|+++..+... ++ ..|+=++- +.-+.+.-+. ++ +-+.+ |-.+-+...+.+||+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~ 151 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeE
Confidence 34579999999999999988876 43 23333332 1222221111 11 11221 211112233689999
Q ss_pred hhcccccccccc-CCCChhhhhhhhcccccCCcEEEEec-----cHHHHHHHHHHHhhccceeEEeccccccCCCCCCCc
Q 013393 354 LHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 427 (444)
Q Consensus 354 ~h~~~~~~~~~~-~~c~~~~~~~e~drilrp~g~~~~rd-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 427 (444)
|-++.... ... ...-....+-++-|.|+|||.+++.- ..+.+..+.+.+++.=-.+....+.-. ....+.-
T Consensus 152 Ii~d~~~~-~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp--~~~~g~w 228 (275)
T 1iy9_A 152 IMVDSTEP-VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIP--TYPSGLW 228 (275)
T ss_dssp EEESCSSC-CSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCT--TSGGGCE
T ss_pred EEECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecC--cccCcce
Confidence 98865332 111 11113577889999999999999973 244455555555554334433211100 0111235
Q ss_pred eEEEEEecc
Q 013393 428 RVLIAKKKL 436 (444)
Q Consensus 428 ~~l~~~k~~ 436 (444)
.+++|.|++
T Consensus 229 ~~~~ask~~ 237 (275)
T 1iy9_A 229 TFTIGSKKY 237 (275)
T ss_dssp EEEEEESSC
T ss_pred EEEEeeCCC
Confidence 688898874
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=0.36 Score=46.13 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=81.9
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccc---cc-cccccccCCCCCCccc---chhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGL---IG-TVHDWCESFSTYPRTY---DLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~---~~-~~~~~~~~~~~y~~~~---dl~h~~ 357 (444)
..|+|+.+|-|.++.+|...|-+ +|+=++- +.-|.+.- ..|+ +- +..||.+.+ |.+| |+|-++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---KEKFASIEMILSN 199 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTTCCEEEEC
T ss_pred CEEEEEeCchhHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---ccccCCCCEEEEc
Confidence 37999999999999988754433 4555553 34444332 2354 22 234666654 3678 999876
Q ss_pred ccccccc---------------cCCCChhhhhhhhc-ccccCCcEEEEeccHHHHHHHHHHHhhccceeEEeccccccCC
Q 013393 358 KVFSEIE---------------ERGCSFEDLLIEMD-RMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDA 421 (444)
Q Consensus 358 ~~~~~~~---------------~~~c~~~~~~~e~d-rilrp~g~~~~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 421 (444)
--+.... -..++-..++-++= +.|+|||++++.-..+--+++++++... ++. .+
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~~~-~D------- 269 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--VFL-KD------- 269 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--EEE-EC-------
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--Cee-cc-------
Confidence 3222100 01233447788888 9999999999976666667788777765 331 22
Q ss_pred CCCCCceEEEEEec
Q 013393 422 LSSSEERVLIAKKK 435 (444)
Q Consensus 422 ~~~~~~~~l~~~k~ 435 (444)
-.+.+++++++++
T Consensus 270 -~~g~~R~~~~~~k 282 (284)
T 1nv8_A 270 -SAGKYRFLLLNRR 282 (284)
T ss_dssp -TTSSEEEEEEECC
T ss_pred -cCCCceEEEEEEc
Confidence 1246899988875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=87.89 E-value=0.29 Score=48.05 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=67.6
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhh----ccc----cccccccccCCCCC----Ccccchhhc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL----IGTVHDWCESFSTY----PRTYDLLHA 356 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~----rg~----~~~~~~~~~~~~~y----~~~~dl~h~ 356 (444)
..|+|+.++-|+|+.++..... .|+-++.. .-+...-+ .|+ +-+++.=++.+... ..+||+|=+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 3799999999999988875433 56666653 33433222 233 22222222222111 358999977
Q ss_pred ccc-cccccc-----CCCChhhhhhhhcccccCCcEEEEec-------cHHHHHHHHHHHhhccceeE
Q 013393 357 WKV-FSEIEE-----RGCSFEDLLIEMDRMLRPEGFVIIRD-------KSSIINYIRKFITALKWDGW 411 (444)
Q Consensus 357 ~~~-~~~~~~-----~~c~~~~~~~e~drilrp~g~~~~rd-------~~~~~~~~~~~~~~~~w~~~ 411 (444)
+-- |....+ ..-....++-++-|+|+|||.+++-. ...+.+-+++.+.....++.
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 433 221000 00125678889999999999977732 23444555556666666554
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=87.83 E-value=0.078 Score=46.37 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=58.9
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhH----Hhhccc---cccc-cccccCCCCC---Ccccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGL---IGTV-HDWCESFSTY---PRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~---~~~~-~~~~~~~~~y---~~~~dl~h~~ 357 (444)
..|+|+.++.|+++.++...+. .+|+-++- +..+.. +-..|+ +-++ .|+.+..+.. +.+||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 4899999999999887665442 24554543 233332 222233 2222 2444422211 4689999988
Q ss_pred ccccccccCCCChhhhhhhh--cccccCCcEEEEeccH
Q 013393 358 KVFSEIEERGCSFEDLLIEM--DRMLRPEGFVIIRDKS 393 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~--drilrp~g~~~~rd~~ 393 (444)
..|.. -....++-++ -|+|+|||.+++....
T Consensus 124 ~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 124 PPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCc-----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 77651 1345566666 9999999999996443
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=1.3 Score=47.57 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCCccEEEecccccccccc--HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 106 SRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d--~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+..||.++.-...-...++ ...+|.++.++++|||.+.-.+.. ..+++.+.+.||.+....
T Consensus 169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~------------~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA------------GFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC------------HHHHHHHHHTTCEEEEEE
T ss_pred CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc------------HHHHHHHHhCCeEEEecc
Confidence 4679999874311111111 158999999999999998742111 357788889999876644
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=87.61 E-value=0.26 Score=45.16 Aligned_cols=114 Identities=10% Similarity=0.107 Sum_probs=66.6
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccCC-CchhH----Hhhccccc--c-ccccccCCC--CCCcccchhhcc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIG--T-VHDWCESFS--TYPRTYDLLHAW 357 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~----~~~rg~~~--~-~~~~~~~~~--~y~~~~dl~h~~ 357 (444)
-..|+|+.+|.|.++..|... |- .+|+-++-. .-+.. +-+.|+-. + -.|-.+.++ .-+.++|.+++.
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~--~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPE--QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCC--CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 357999999999999988632 21 245545532 33332 33445422 1 223222212 125899999875
Q ss_pred cccccccc-----CCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhh
Q 013393 358 KVFSEIEE-----RGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITA 405 (444)
Q Consensus 358 ~~~~~~~~-----~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~ 405 (444)
.... +.+ +|---..++-++-|+|+|||.+++. |.....+.+..++..
T Consensus 113 ~~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 113 FPDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp SCCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred CCCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 2211 111 1222235889999999999999886 455556666666654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=87.53 E-value=0.35 Score=46.95 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=64.3
Q ss_pred eEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhhc----cc--cccccccccCCCCCCcccchhhccc--
Q 013393 290 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWK-- 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~r----g~--~~~~~~~~~~~~~y~~~~dl~h~~~-- 358 (444)
..|+|+.++-|+++..|... +- -.|+-++- +.-+..+-++ |+ +-+.+.=.+.++.++.+||+|-++-
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pc 197 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 197 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCC
Confidence 47999999999998888641 11 12444443 2344443332 44 2222222233333567899998753
Q ss_pred ----cccccc--cCCCC----------hhhhhhhhcccccCCcEEEEec----cHHHHHHHHHHHhhcccee
Q 013393 359 ----VFSEIE--ERGCS----------FEDLLIEMDRMLRPEGFVIIRD----KSSIINYIRKFITALKWDG 410 (444)
Q Consensus 359 ----~~~~~~--~~~c~----------~~~~~~e~drilrp~g~~~~rd----~~~~~~~~~~~~~~~~w~~ 410 (444)
.+.... ..+-+ -..+|-++-|+|+|||.+++-. ..+--+.|+.+++...++.
T Consensus 198 sg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~ 269 (315)
T 1ixk_A 198 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL 269 (315)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred CCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence 232100 00000 1478889999999999999931 1122233445555544443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=87.45 E-value=0.24 Score=44.48 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=55.3
Q ss_pred eeEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhhc----cc--cc-cccccccCCCCCCcccchhhccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----GL--IG-TVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~r----g~--~~-~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
-..|+|+.++.|.+++.|... |- -+|+-++. +..+...-++ |+ +- ...|..+.++ -+.+||+|.++.
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~ 154 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGED--GLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTA 154 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESS
T ss_pred CCEEEEECCCccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECC
Confidence 348999999999999888642 10 13444443 2334333322 32 11 1223333332 146899999988
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEeccH
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 393 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~ 393 (444)
.+.... -++-|+|+|||.+++--..
T Consensus 155 ~~~~~~----------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 155 AGPKIP----------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BBSSCC----------HHHHHTEEEEEEEEEEESS
T ss_pred chHHHH----------HHHHHHcCCCcEEEEEECC
Confidence 776322 2788999999999886443
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.17 Score=49.63 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=60.9
Q ss_pred eEEEecccccchhhhhccCC-CceEEEeccccCC-CchhHH----hhccccccccccccCCCCCCcccchhhcccccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~-~~l~~~----~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
..|+|+.+|.|.++..+... |-+ +|+-++.. .-+... -..|+-..+ -+...++.-+.+||+|-++..|...
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKI--RLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTC--BCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCSS
T ss_pred CeEEEecCccCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCcccC
Confidence 36999999999999888642 221 34444432 223322 223432211 1233333337899999999888621
Q ss_pred c-cCCCChhhhhhhhcccccCCcEEEEec
Q 013393 364 E-ERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 364 ~-~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. ...-....++-|+-|+|+|||.+++-.
T Consensus 275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 0 011236788999999999999998853
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.58 Score=46.70 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=58.7
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC--------
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-------- 104 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~-------- 104 (444)
.++++. +||-+|||. |.++..+++. .|++++. ++...+++++.|. .. .+.....+
T Consensus 182 ~~~~g~---~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa--~~--i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 182 GVKPGS---HVYIAGAGPVGRCAAAGARLLGAACVIVGDQ-----NPERLKLLSDAGF--ET--IDLRNSAPLRDQIDQI 249 (398)
T ss_dssp TCCTTC---EEEEECCSHHHHHHHHHHHHHTCSEEEEEES-----CHHHHHHHHTTTC--EE--EETTSSSCHHHHHHHH
T ss_pred CCCCCC---EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----CHHHHHHHHHcCC--cE--EcCCCcchHHHHHHHH
Confidence 345555 899999975 7777777762 4555544 4556667776665 22 22221111
Q ss_pred -CCCCccEEEeccccccc--------cccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 105 -PSRSFELAHCSRCRIDW--------LQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 105 -~~~sFDlI~~~~~~l~~--------~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....||+|+-.-. ... ..+....+.++.+.|+|||++++..
T Consensus 250 ~~g~g~Dvvid~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 250 LGKPEVDCGVDAVG-FEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HSSSCEEEEEECSC-TTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred hCCCCCCEEEECCC-CccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 1236999986542 111 0112357899999999999998754
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=87.24 E-value=0.16 Score=49.90 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=60.2
Q ss_pred CceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHhh-ccccccccccccCCCCCCcccchhhccccccccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD-RGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~~-rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
.....|+|+..+.|.++.+|.+. |-. .|+-+|-+..+...-+ .++-=+-+|-.++ .|. ||++.+.+++..+.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~p~-~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKL--KCIVFDRPQVVENLSGSNNLTYVGGDMFTS---IPN-ADAVLLKYILHNWT 260 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHTTCCCBTTEEEEECCTTTC---CCC-CSEEEEESCGGGSC
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCC--eEEEeeCHHHHhhcccCCCcEEEeccccCC---CCC-ccEEEeehhhccCC
Confidence 34578999999999999999743 311 2222222211111111 1222223454443 454 99999999987543
Q ss_pred cCCCChhhhhhhhcccccC---CcEEEEec
Q 013393 365 ERGCSFEDLLIEMDRMLRP---EGFVIIRD 391 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp---~g~~~~rd 391 (444)
.. ....+|-++-|.|+| ||.++|-|
T Consensus 261 d~--~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 261 DK--DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp HH--HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred HH--HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 22 234899999999999 99998864
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.13 E-value=0.41 Score=47.24 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=58.0
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecC---ccC-CCCCCC
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT---KRL-PYPSRS 108 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~---~~l-p~~~~s 108 (444)
.++++. +||-+|||. |.++..+++. .|++++. ++...+.+++.+....+...+. +.+ ....+.
T Consensus 187 ~~~~g~---~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg 258 (371)
T 1f8f_A 187 KVTPAS---SFVTWGAGAVGLSALLAAKVCGASIIIAVDI-----VESRLELAKQLGATHVINSKTQDPVAAIKEITDGG 258 (371)
T ss_dssp CCCTTC---EEEEESCSHHHHHHHHHHHHHTCSEEEEEES-----CHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSC
T ss_pred CCCCCC---EEEEECCCHHHHHHHHHHHHcCCCeEEEECC-----CHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCC
Confidence 445554 899999985 7777777762 3555543 4566677777775433321110 000 011236
Q ss_pred ccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 109 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 109 FDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
||+|+-... ....+.++.+.|+|||.+++..
T Consensus 259 ~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 259 VNFALESTG-------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEEEEECSC-------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CcEEEECCC-------CHHHHHHHHHHHhcCCEEEEeC
Confidence 999985431 1357888999999999999854
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=86.94 E-value=0.73 Score=45.54 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=60.2
Q ss_pred CCceeEEEecccccchhhhhccC-CCceEEEeccccCCCchhHHhhc-cccccccccccCCCCCCcccchhhcccccccc
Q 013393 286 KNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 286 ~~~~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~~~l~~~~~r-g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
......|+|...+.|.++.+|.+ .|-. .++-.|-+..+...-++ ++-=+-+|.-++ +|.. |++.+.+++..+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~p~~-D~v~~~~vlh~~ 274 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSI--NAINFDLPHVIQDAPAFSGVEHLGGDMFDG---VPKG-DAIFIKWICHDW 274 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCGGGB
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCC--EEEEEehHHHHHhhhhcCCCEEEecCCCCC---CCCC-CEEEEechhhcC
Confidence 45678999999999999999864 2321 12222221111111111 121223444444 4544 999999988744
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
... ....+|-++=|.|+|||.++|-|
T Consensus 275 ~~~--~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 275 SDE--HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp CHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHH--HHHHHHHHHHHHcCCCCEEEEEE
Confidence 321 34578999999999999999965
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=86.74 E-value=1.5 Score=41.17 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=69.2
Q ss_pred ceeEEEecccccchhhhhccCC--CceEEEeccccC-CCchhHHhhc-----cc--cc-cccccccCCCCCCcccchhhc
Q 013393 288 TFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR-----GL--IG-TVHDWCESFSTYPRTYDLLHA 356 (444)
Q Consensus 288 ~~rnvmDm~a~~G~f~a~~~~~--~~wv~~~~~~~~-~~~l~~~~~r-----g~--~~-~~~~~~~~~~~y~~~~dl~h~ 356 (444)
.-..|+|+.++.|+++..|... |. .+|+-++- +..+..+-++ |+ +- .-.|..+.++ +.+||+|-+
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~fD~Vi~ 185 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGK--GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIA 185 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTS--SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCCccEEEE
Confidence 3358999999999999888653 22 13444443 3444433332 42 11 2234555443 368999876
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEeccHH-HHHHHHHHHhhcccee
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS-IINYIRKFITALKWDG 410 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~-~~~~~~~~~~~~~w~~ 410 (444)
+ .. +...++-++-|+|+|||.+++-+... -.+++.+.+....|..
T Consensus 186 ~-----~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 186 D-----IP----DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp C-----CS----CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred c-----Cc----CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 2 11 24678899999999999998866543 5667766666655554
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.65 E-value=0.89 Score=38.70 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCCCCCccEEEeccccc-cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeecce
Q 013393 103 PYPSRSFELAHCSRCRI-DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 181 (444)
Q Consensus 103 p~~~~sFDlI~~~~~~l-~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~~~ 181 (444)
..|+++||.|+...-.- ....-...++..+++.|||||.|.. .+. -...+.++. ||.+....+.
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g--------l~~----~~~~Eaila--Gfvv~~~~~~- 118 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG--------LSD----IYKVDALIN--GFEIINEPDY- 118 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC--------CCH----HHHHHHHHH--TEEEECSSSC-
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe--------cCc----chhhHHHhh--ccEeccCCCc-
Confidence 45688999999643111 1112237899999999999999985 111 123444444 8876653222
Q ss_pred eEeeccCc
Q 013393 182 VIWAKPIS 189 (444)
Q Consensus 182 ~~w~k~l~ 189 (444)
.|.||-.
T Consensus 119 -~~~KP~~ 125 (136)
T 2km1_A 119 -CWIKMDS 125 (136)
T ss_dssp -EEEEC--
T ss_pred -eeeccCc
Confidence 7999854
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=86.59 E-value=0.78 Score=45.33 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=60.6
Q ss_pred CCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchhHHhhc-cccccccccccCCCCCCcccchhhcccccccc
Q 013393 286 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 286 ~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~~~~~r-g~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
......|+|+..+-|.++.+|.+. |-. .++-.|-|..+...-++ ++-=+-+|..+++ |.. |++.+.+++-.+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~---p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTI--KGVNFDLPHVISEAPQFPGVTHVGGDMFKEV---PSG-DTILMKWILHDW 272 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHTTCCCCTTEEEEECCTTTCC---CCC-SEEEEESCGGGS
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCC--eEEEecCHHHHHhhhhcCCeEEEeCCcCCCC---CCC-CEEEehHHhccC
Confidence 456789999999999999999642 321 12222222111111111 1222334544444 444 999999988744
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
... +...+|-++=|.|+|||.++|-|
T Consensus 273 ~d~--~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 273 SDQ--HCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp CHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHH--HHHHHHHHHHHHcCCCCEEEEEE
Confidence 321 35678999999999999999965
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=0.43 Score=44.52 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=57.1
Q ss_pred eeEEEecccccchhhhhccCC-C-ceEEEeccccC-CCchhH----Hhhccc---cccc-cccccCCCCC------Cccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKI----IYDRGL---IGTV-HDWCESFSTY------PRTY 351 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~~----~~~rg~---~~~~-~~~~~~~~~y------~~~~ 351 (444)
-++|+|+.++.|.++..|... | - -.|+-++. +..+.+ +-..|+ |-+. .|..+..+.. +.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPED--GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTT--CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 358999999999998877532 1 1 24444443 233332 222344 2122 1333322332 5789
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 352 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 352 dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
|+|-++.-. -....++-++-|.|||||.+++.|
T Consensus 158 D~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 999766421 236677888899999999999864
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=86.15 E-value=0.84 Score=44.75 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEe--cCcc----CC-CC
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL--GTKR----LP-YP 105 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~--d~~~----lp-~~ 105 (444)
.++++. +||-+|+|. |.++..+++. .|++++ .++...+++++.|....+... +..+ +. ..
T Consensus 168 ~~~~g~---~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~-----~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 168 GVTLGH---KVLVCGAGPIGMVTLLVAKAMGAAQVVVTD-----LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp TCCTTC---EEEEECCSHHHHHHHHHHHHTTCSEEEEEE-----SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCCC---EEEEECCCHHHHHHHHHHHHcCCCEEEEEC-----CCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHh
Confidence 344554 899999874 7777777762 345554 445666777777765333211 0001 00 00
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.+.||+|+-.-. ....+.+..+.|+|||.+++..
T Consensus 240 ~~g~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 240 GCKPEVTIECTG-------AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp TSCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCC-------ChHHHHHHHHHhcCCCEEEEEe
Confidence 146999985431 1346788899999999999854
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.12 E-value=1.4 Score=41.27 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCCCCccEEEeccccccccc---------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHH
Q 013393 104 YPSRSFELAHCSRCRIDWLQ---------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 168 (444)
Q Consensus 104 ~~~~sFDlI~~~~~~l~~~~---------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~ 168 (444)
.++++||+|++.- -.... .....+.++.++|+|||.+++ .........+..++.
T Consensus 19 l~~~~vdlI~~DP--PY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v---------~~~d~~~~~~~~~~~ 87 (260)
T 1g60_A 19 VENKSVQLAVIDP--PYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYI---------FNTPFNCAFICQYLV 87 (260)
T ss_dssp SCTTCEEEEEECC--CCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEE---------EECHHHHHHHHHHHH
T ss_pred ccccccCEEEECC--CCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEE---------EcCcHHHHHHHHHHH
Q ss_pred hcCeEEEeeecceeEeecc
Q 013393 169 SMCWKIVSKKDQTVIWAKP 187 (444)
Q Consensus 169 ~~gf~~v~~~~~~~~w~k~ 187 (444)
+.||.... ..+|.|+
T Consensus 88 ~~gf~~~~----~iiW~K~ 102 (260)
T 1g60_A 88 SKGMIFQN----WITWDKR 102 (260)
T ss_dssp HTTCEEEE----EEEECCC
T ss_pred hhccceeE----EEEEEec
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=85.95 E-value=0.17 Score=46.01 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=51.3
Q ss_pred eEEEecccccchhhhhccCC--C-ceEEEeccccCC-CchhHH---h-hc-cccccccccccC--CCCCCcccchhhccc
Q 013393 290 RNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRMS-ARLKII---Y-DR-GLIGTVHDWCES--FSTYPRTYDLLHAWK 358 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~--~-~wv~~~~~~~~~-~~l~~~---~-~r-g~~~~~~~~~~~--~~~y~~~~dl~h~~~ 358 (444)
..|+|+.+|-|.++..|.+. | - +|+-++.. .-+... . .+ ++--+..|-.+. +...+.+||++-++.
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 47999999999999888642 1 1 22323321 111111 1 11 221122233331 122356899998654
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
... -....++-++-|+|+|||.+++
T Consensus 152 ~~~------~~~~~~l~~~~~~LkpgG~l~~ 176 (227)
T 1g8a_A 152 AQP------TQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp CST------THHHHHHHHHHHHEEEEEEEEE
T ss_pred CCH------hHHHHHHHHHHHhcCCCCEEEE
Confidence 311 1233558999999999999988
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.75 E-value=1.4 Score=43.88 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=60.2
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc-CC------CC
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP------YP 105 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~-lp------~~ 105 (444)
.++++. +||-+|||. |.++..+++. .|+++ +.++...+++++.|.. ........ +. ..
T Consensus 182 ~~~~g~---~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~-----~~~~~~~~~a~~lGa~--~i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 182 GVGPGS---TVYVAGAGPVGLAAAASARLLGAAVVIVG-----DLNPARLAHAKAQGFE--IADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp TCCTTC---EEEEECCSHHHHHHHHHHHHTTCSEEEEE-----ESCHHHHHHHHHTTCE--EEETTSSSCHHHHHHHHHS
T ss_pred CCCCCC---EEEEECCcHHHHHHHHHHHHCCCCeEEEE-----cCCHHHHHHHHHcCCc--EEccCCcchHHHHHHHHhC
Confidence 344554 899999875 7777777763 34554 4456667788777753 22111111 00 11
Q ss_pred CCCccEEEeccccc--------cccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 106 SRSFELAHCSRCRI--------DWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 106 ~~sFDlI~~~~~~l--------~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
...+|+|+-.-..- .+.++....+.++.+.|++||.+++..
T Consensus 252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 24699998654211 112344568999999999999998754
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=85.73 E-value=0.2 Score=45.47 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=52.9
Q ss_pred eEEEecccccchhhhhccCC------CceEEEeccccC-CCchhHHh----hccc-------ccc-ccccccCCC---CC
Q 013393 290 RNVMDMNSNLGGFAAALKDK------DVWVMNVAPVRM-SARLKIIY----DRGL-------IGT-VHDWCESFS---TY 347 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~------~~wv~~~~~~~~-~~~l~~~~----~rg~-------~~~-~~~~~~~~~---~y 347 (444)
..|+|+.++.|.+++.|... |-. +|+-++. +.-+...- +.|+ +-+ ..|..+.++ .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS--YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTC--EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCC--EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 48999999999999888642 211 3333443 22333222 2231 111 123333210 12
Q ss_pred CcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 348 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+.+||+|+++..+. .++-++-|+|+|||.+++--
T Consensus 160 ~~~fD~I~~~~~~~----------~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASAS----------ELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBS----------SCCHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchH----------HHHHHHHHhcCCCcEEEEEE
Confidence 36799999887665 24567789999999998853
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=85.65 E-value=2.8 Score=44.79 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=40.6
Q ss_pred CCCccEEEeccccccccccH----HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 106 SRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~----~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
...||+|+.-. +.-..++ ..+|.++.++++|||.+.-.+.. ..+++.+.+.||.+....
T Consensus 177 ~~~~d~~~~D~--f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~------------~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 177 NQKVDAWFLDG--FAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA------------GFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp TTCEEEEEECC--SCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCC------------HHHHHHHHHHTCEEEEEE
T ss_pred CCcccEEEECC--CCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCc------------HHHHHHHHhCCeEEEecc
Confidence 46799998743 1111222 47999999999999998752211 357778889999876543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 444 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-06 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 6e-04 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 7e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.003 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.003 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.003 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)
Query: 38 KLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 97
K + +R VLD+ CG L + L ++ + + +
Sbjct: 35 KEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQ 94
Query: 98 GTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPE 155
G F+ I + + + L ++ L+PGG F+ P + +
Sbjct: 95 GDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRD 154
Query: 156 NRRIWNAMYDLLKSMCWKIVSKKDQT 181
+WN K + +
Sbjct: 155 GPVVWNEQKGEEKLVIMDWREVEPAV 180
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (89), Expect = 6e-04
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 48 VLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY 104
+LD+G G + ++ + + + +
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 105 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 164
+ ++A C G L + L+PGG + P + P I A
Sbjct: 97 ANEKCDVAACVGATWIAGGFAGA-EELLAQSLKPGGIMLIGEP-YWRQLPATEEIAQACG 154
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 39.0 bits (89), Expect = 7e-04
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 9/154 (5%)
Query: 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI 82
K+ L + F + L N VLD+G G + +L + + P+
Sbjct: 24 KWKLYHRLIGSFLEEYLKNPCR---VLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVA 80
Query: 83 QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 142
+ + + + LP+PS +FE + +++ E+ R+L P G
Sbjct: 81 REKGVKNVVEA----KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLL 136
Query: 143 VYSSP--EAYAHDPENRRIWNAMYDLLKSMCWKI 174
+ + + + W+ + LK+ +
Sbjct: 137 IATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSV 170
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.0 bits (85), Expect = 0.003
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 48 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYP 105
+L +G + +++ + A + ++ L+ + + +LG P
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYA-IEYAPRIMRELLDACAERENIIPILGDANKPQE 136
Query: 106 SR-SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145
E + + IL+ L+ GGY + +
Sbjct: 137 YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.9 bits (84), Expect = 0.003
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 3/148 (2%)
Query: 40 NNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 99
N + LD+ CG + L ++ + ++ +
Sbjct: 33 ENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92
Query: 100 KRLPYPSRSFELAHCSRCRIDWLQRDGIL---LLELDRLLRPGGYFVYSSPEAYAHDPEN 156
+R F+L C +++ L + L+ GG F++ Y
Sbjct: 93 ISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152
Query: 157 RRIWNAMYDLLKSMCWKIVSKKDQTVIW 184
D W+ + D ++
Sbjct: 153 GNNDFNYDDDEVFYYWENQFEDDLVSMY 180
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.8 bits (84), Expect = 0.003
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 31 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI 90
+ F + + +++D GCG G L+ D E + A E
Sbjct: 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR 73
Query: 91 PSTLGVLGTKRLPYPSRSFELAHCSRCR--IDWLQRDGILLLELDRLLRPGGYFVYSSPE 148
+ + + C + + +L ++ ++ GG + P
Sbjct: 74 LLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133
Query: 149 AYAHDP 154
++
Sbjct: 134 WISNMA 139
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 36.6 bits (84), Expect = 0.003
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Query: 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 105
++L+VG G + +Y+L +L + E+ ++ A++
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147
+ D + ++ +++PG + P
Sbjct: 147 ADFISDQMYDAVIADIPDPWNH-VQKIASMMKPGSVATFYLP 187
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 444 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.76 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.69 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.66 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.66 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.66 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.66 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.62 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.61 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.6 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.57 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.57 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.54 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.53 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.51 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.5 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.49 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.46 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.45 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.43 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.43 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.42 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.4 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.4 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.39 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.37 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.36 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.35 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.34 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.32 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.27 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.26 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.26 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.26 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.21 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.18 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.16 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.15 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.13 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.11 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.09 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.08 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.01 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.97 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.91 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.82 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.81 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.8 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.74 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.73 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.66 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.65 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.64 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.59 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.52 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.45 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.45 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.38 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.36 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.32 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.31 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.3 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.27 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.24 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.2 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.19 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.08 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.01 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.94 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.93 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.92 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.87 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 97.87 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.74 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.72 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.63 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.56 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.54 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.52 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.5 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.46 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.42 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.37 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.34 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.33 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.32 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.28 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.19 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.15 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 96.99 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 96.94 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.9 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.89 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.87 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 96.64 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.63 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 96.59 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 96.49 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 96.41 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 96.27 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 96.25 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 96.25 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.21 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.14 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.14 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.96 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 95.91 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.81 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 95.81 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 95.73 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.72 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 95.69 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 95.66 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 95.55 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 94.98 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 94.98 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 94.86 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 94.65 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 94.61 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 94.47 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 94.38 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 94.34 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 94.19 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.64 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 93.41 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.24 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 93.13 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 92.78 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.43 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.42 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 92.02 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 91.65 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.0 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.31 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 89.87 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 89.7 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 89.16 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 89.13 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.47 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 88.29 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 88.29 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 88.08 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 87.37 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 86.68 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 86.33 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.29 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 84.92 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 82.22 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.22 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 80.4 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 80.39 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.78 E-value=6.9e-19 Score=163.23 Aligned_cols=129 Identities=13% Similarity=0.209 Sum_probs=98.2
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 124 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d 124 (444)
+|||||||+|.++..+++. .++|+|+++.++..++.........++.+.+.|.+.+|+++++||+|+|.. +++|.+|
T Consensus 18 rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~-~l~~~~d 96 (231)
T d1vl5a_ 18 EVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHHFPN 96 (231)
T ss_dssp EEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES-CGGGCSC
T ss_pred EEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccc-cccccCC
Confidence 8999999999999999885 677888777766655543434345678899999999999999999999999 5888899
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHH-----------------HHHHHHHHHhcCeEEEee
Q 013393 125 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRI-----------------WNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 125 ~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~-----------------~~~l~~l~~~~gf~~v~~ 177 (444)
+..++++++|+|||||++++.++..... ...... -.++.++++++||+++..
T Consensus 97 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 165 (231)
T d1vl5a_ 97 PASFVSEAYRVLKKGGQLLLVDNSAPEN-DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 165 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEBCSS-HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCCC-HHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 9999999999999999999975432111 100000 135778888889977644
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=5e-18 Score=158.44 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecC
Q 013393 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGT 99 (444)
Q Consensus 23 ~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~ 99 (444)
++.+.+.+... ++|+. +|||||||+|.++..|+++ +|+|+|+|+.++..++. .+...+ .++.+.++|.
T Consensus 3 ~~~~~l~~~~~-----~~~~~---rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~-~~~~~~~~~~~~~~~d~ 73 (234)
T d1xxla_ 3 HSLGLMIKTAE-----CRAEH---RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASS-FAQEKGVENVRFQQGTA 73 (234)
T ss_dssp HHHHHHHHHHT-----CCTTC---EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHHTCCSEEEEECBT
T ss_pred hHHHHHHHHhC-----CCCCC---EEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhh-hhccccccccccccccc
Confidence 44555666664 44555 8999999999999999885 67778777766655553 333333 4688999999
Q ss_pred ccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHH-----------------HHH
Q 013393 100 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRI-----------------WNA 162 (444)
Q Consensus 100 ~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~-----------------~~~ 162 (444)
+++|+++++||+|+|.. +++|.+|+..+++++.|+|||||++++++.... ..+..... ...
T Consensus 74 ~~~~~~~~~fD~v~~~~-~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T d1xxla_ 74 ESLPFPDDSFDIITCRY-AAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP-EDPVLDEFVNHLNRLRDPSHVRESSLSE 151 (234)
T ss_dssp TBCCSCTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC-SSHHHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred ccccccccccceeeeec-eeecccCHHHHHHHHHHeeCCCcEEEEEEcCCC-CCHHHHHHHHHHHhhCCCcccccCCHHH
Confidence 99999999999999998 588889999999999999999999999653321 11111111 124
Q ss_pred HHHHHHhcCeEEEee
Q 013393 163 MYDLLKSMCWKIVSK 177 (444)
Q Consensus 163 l~~l~~~~gf~~v~~ 177 (444)
+..+++..||.+...
T Consensus 152 ~~~~~~~~gf~~~~~ 166 (234)
T d1xxla_ 152 WQAMFSANQLAYQDI 166 (234)
T ss_dssp HHHHHHHTTEEEEEE
T ss_pred HHHHHHHCCCceeEE
Confidence 667788888866543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.71 E-value=3.1e-17 Score=157.42 Aligned_cols=136 Identities=17% Similarity=0.202 Sum_probs=100.1
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAH 113 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~ 113 (444)
++++. +|||||||+|.++..|+++ .|+|+|+++.++..+... +...+ .++.+...|+.++|+++++||+|+
T Consensus 65 l~~~~---~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~-~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~ 140 (282)
T d2o57a1 65 LQRQA---KGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY-NNQAGLADNITVKYGSFLEIPCEDNSYDFIW 140 (282)
T ss_dssp CCTTC---EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCC---EEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcc-cccccccccccccccccccccccccccchhh
Confidence 44444 9999999999999999873 577777777665544432 22333 368899999999999999999999
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC-hhh-HHH-----------HHHHHHHHHhcCeEEEeeec
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD-PEN-RRI-----------WNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~-~~~-~~~-----------~~~l~~l~~~~gf~~v~~~~ 179 (444)
|.. +++|.++...+|+++.++|||||+|+++++...... ... ... .....+++++.||+.+....
T Consensus 141 ~~~-~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d 218 (282)
T d2o57a1 141 SQD-AFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 218 (282)
T ss_dssp EES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccc-hhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 998 577789999999999999999999999764322111 111 111 13567889999998776543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=4.8e-17 Score=149.39 Aligned_cols=100 Identities=20% Similarity=0.434 Sum_probs=82.4
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccc-
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~- 123 (444)
+|||||||+|.++..+++. .|+|+|+++.++..+. +.+...+....+...|+..+|+++++||+|+|.. +++|.+
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~-~l~~~~~ 117 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID-SIVHFEP 117 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES-CGGGCCH
T ss_pred EEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEec-chhhCCh
Confidence 8999999999999999985 5678877776665554 3344456778888899999999999999999998 577765
Q ss_pred -cHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 124 -RDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 124 -d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+..++|+++.++|||||++++..+.
T Consensus 118 ~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 118 LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 5668999999999999999987544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=7e-17 Score=150.24 Aligned_cols=100 Identities=21% Similarity=0.401 Sum_probs=83.2
Q ss_pred CeEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccH
Q 013393 46 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 125 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~ 125 (444)
.+|||+|||+|.++..|++.+ .++.++|+++.+++.|++++... +..++++++|+++++||+|+|...++||.+|.
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~ 119 (246)
T d2avna1 44 CRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 119 (246)
T ss_dssp CEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CEEEEECCCCchhcccccccc---eEEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhhhH
Confidence 389999999999999999862 23444455567778888876544 55788999999999999999976679999999
Q ss_pred HHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 126 GILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 126 ~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
..+|+++.|+|||||+++++.++.
T Consensus 120 ~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 120 DKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHhhcCcCcEEEEEECCH
Confidence 999999999999999999987653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.1e-17 Score=149.48 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=97.4
Q ss_pred CCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
...+|||||||+|.++..+++. .|+|+|+++.++..+..........+..+.+.|++++++++++||+|+|.. +++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~-~l~ 138 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW-VIG 138 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES-CGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc-ccc
Confidence 3458999999999999988753 467776666555444332222223356888999999999899999999998 577
Q ss_pred ccccH--HHHHHHHHhhcCCCeEEEEEcCCCCCC------ChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 121 WLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH------DPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 121 ~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~~~------~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
|+++. ..+++++.++|||||.++++++..... ........+.+.+++++.||+++..+.
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 77665 479999999999999999975432211 001112346789999999999887654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.7e-16 Score=144.88 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=96.1
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccccccHH
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 126 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~ 126 (444)
+|||||||+|.++..+. .++|+|+++ .+++.|+++ ++.+...|.+.+|+++++||+|+|+. +++|++++.
T Consensus 39 ~vLDiGcG~G~~~~~~~--~~~giD~s~-----~~~~~a~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~-~l~h~~d~~ 108 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLK--IKIGVEPSE-----RMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVT-TICFVDDPE 108 (208)
T ss_dssp CEEEETCTTSTTHHHHT--CCEEEESCH-----HHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEES-CGGGSSCHH
T ss_pred eEEEECCCCcccccccc--eEEEEeCCh-----hhccccccc--cccccccccccccccccccccccccc-ccccccccc
Confidence 79999999999998885 467877654 556667765 56788999999999999999999998 688899999
Q ss_pred HHHHHHHhhcCCCeEEEEEcCCCCCCCh-------------hhH--HHHHHHHHHHHhcCeEEEeee
Q 013393 127 ILLLELDRLLRPGGYFVYSSPEAYAHDP-------------ENR--RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 127 ~~L~ei~rvLkPGG~lvis~p~~~~~~~-------------~~~--~~~~~l~~l~~~~gf~~v~~~ 178 (444)
.+|+++.++|||||++++..+....... ... ..-.++.+++++.||+.+...
T Consensus 109 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 109 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 9999999999999999998865431100 000 012478899999999877543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=2.1e-16 Score=148.38 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGV 96 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~ 96 (444)
...++.+.+.+.+ .|+. +|||||||+|.++..++++ .|+|+|+++.++..+. +.+.+.+. ++.+..
T Consensus 19 ~~~~~~l~~~~~l-----~pg~---~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~ 89 (245)
T d1nkva_ 19 EEKYATLGRVLRM-----KPGT---RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIH 89 (245)
T ss_dssp HHHHHHHHHHTCC-----CTTC---EEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHcCC-----CCCC---EEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhh
Confidence 4566677777754 4454 8999999999999998763 4677777666554443 23344454 478999
Q ss_pred ecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC--hh-----------hHHHHHHH
Q 013393 97 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD--PE-----------NRRIWNAM 163 (444)
Q Consensus 97 ~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~--~~-----------~~~~~~~l 163 (444)
.|...+ +++++||+|+|..+ ++|..|...+++++.|+|||||+++++.+...... .+ .......+
T Consensus 90 ~d~~~~-~~~~~fD~v~~~~~-~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (245)
T d1nkva_ 90 NDAAGY-VANEKCDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGL 167 (245)
T ss_dssp SCCTTC-CCSSCEEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHH
T ss_pred hHHhhc-cccCceeEEEEEeh-hhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHH
Confidence 998887 46789999999995 77888999999999999999999999765322111 00 01122356
Q ss_pred HHHHHhcCeEEE
Q 013393 164 YDLLKSMCWKIV 175 (444)
Q Consensus 164 ~~l~~~~gf~~v 175 (444)
...+++.||+.+
T Consensus 168 ~~~~~~aG~~~v 179 (245)
T d1nkva_ 168 VGAFDDLGYDVV 179 (245)
T ss_dssp HHHHHTTTBCCC
T ss_pred HHHHHHcCCEEE
Confidence 777888888654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.62 E-value=4.8e-16 Score=144.17 Aligned_cols=134 Identities=19% Similarity=0.222 Sum_probs=100.5
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
+|||||||+|.++..++++ .|+|+|++ +.+++.|+++ ..++.+...+.+.+++ +++||+|+|.. +++|++
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~v~giD~s-----~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~-vleh~~ 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFNDITCVEAS-----EEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTH-VLEHID 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESC-----HHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEES-CGGGCS
T ss_pred cEEEEeCCCcHHHHHHHHcCCeEEEEeCc-----HHHhhhhhccccccccccccccccccc-ccccccccccc-eeEecC
Confidence 7999999999999999875 56666554 5566777666 3457788888887776 57899999998 699999
Q ss_pred cHHHHHHHHH-hhcCCCeEEEEEcCCCCCC-----------------ChhhH-------HHHHHHHHHHHhcCeEEEeee
Q 013393 124 RDGILLLELD-RLLRPGGYFVYSSPEAYAH-----------------DPENR-------RIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 124 d~~~~L~ei~-rvLkPGG~lvis~p~~~~~-----------------~~~~~-------~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+..+|.++. ++|||||+++++.|+.... ..... -.+..+.+++++.||+++...
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 9999999998 8999999999988753211 00000 024589999999999987754
Q ss_pred cceeEeeccCch
Q 013393 179 DQTVIWAKPISN 190 (444)
Q Consensus 179 ~~~~~w~k~l~~ 190 (444)
. ++.+|..+
T Consensus 176 ~---~~~kp~~~ 184 (225)
T d2p7ia1 176 G---IFFKALAN 184 (225)
T ss_dssp E---EEECCSCH
T ss_pred E---EEeccccH
Confidence 3 34456543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=1e-15 Score=147.74 Aligned_cols=203 Identities=12% Similarity=0.159 Sum_probs=125.1
Q ss_pred cCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHH
Q 013393 10 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL 86 (444)
Q Consensus 10 fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~ 86 (444)
|+.+..........-.+.+.+.+. +++|. +|||||||+|.++.+++++ .|+|+++|+..+..++ +.++
T Consensus 35 ~~~~~~tL~~Aq~~k~~~~~~~l~-----l~~G~---~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~ 105 (291)
T d1kpia_ 35 FERPDMTLEEAQYAKRKLALDKLN-----LEPGM---TLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFD 105 (291)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTC-----CCTTC---EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcC-----CCCCC---EEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHH
Confidence 343344444444444455555553 45555 9999999999999999863 5666766665543333 2333
Q ss_pred HcCCC--cEEEEecCccCCCCCCCccEEEeccccccccc---------cHHHHHHHHHhhcCCCeEEEEEcCCCCC----
Q 013393 87 ERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ---------RDGILLLELDRLLRPGGYFVYSSPEAYA---- 151 (444)
Q Consensus 87 e~~~~--~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~---------d~~~~L~ei~rvLkPGG~lvis~p~~~~---- 151 (444)
+.+.. +.+...|. ++++++||.|+|..+ ++|.. +.+.+|+++.++|||||++++++.....
T Consensus 106 ~~~l~~~v~~~~~d~---~~~~~~fD~i~sie~-~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~ 181 (291)
T d1kpia_ 106 EVDSPRRKEVRIQGW---EEFDEPVDRIVSLGA-FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEA 181 (291)
T ss_dssp HSCCSSCEEEEECCG---GGCCCCCSEEEEESC-GGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHH
T ss_pred hhccchhhhhhhhcc---cccccccceEeechh-HHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchh
Confidence 34443 34444443 455789999999985 66654 3689999999999999999986532110
Q ss_pred -----CChhhH---------HH--------HHHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcCCCCCCCccc-CC
Q 013393 152 -----HDPENR---------RI--------WNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCS-SD 208 (444)
Q Consensus 152 -----~~~~~~---------~~--------~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~~~~~p~lc~-~~ 208 (444)
..+... .+ ..++..++++.||++....+....|.+++..+...+.... ..... .+
T Consensus 182 ~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL~~W~~~f~~~~--~ei~~l~g 259 (291)
T d1kpia_ 182 QELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADALQAHK--DEAIALKG 259 (291)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHHHHTH--HHHHHHHH
T ss_pred hhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeeccccHHHHHHHHHHHHHHHH--HHHHHhcC
Confidence 000000 01 1367788899999999888888888888877665554321 00000 12
Q ss_pred CCcchhhhhcccccccccc
Q 013393 209 DDPDVTWNVLMKACISPYS 227 (444)
Q Consensus 209 ~~~~~awy~~l~~ci~~~p 227 (444)
++....|...+..|...+.
T Consensus 260 ~~~~r~W~~yl~~ce~~F~ 278 (291)
T d1kpia_ 260 QETCDIYMHYLRGCSDLFR 278 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 2333456666666655444
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.60 E-value=1.8e-15 Score=141.52 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
..++|||||||+|.++..|+++ .|+|+|+++.++..++. .+.+.+.++.+.++|++.++++ ++||+|+|...+++|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~-~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccc-ccccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 3458999999999999999886 57777777666654443 3344577899999999999987 589999998766776
Q ss_pred c--ccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 122 L--QRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 122 ~--~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
. ++...+|++++++|||||++++..+.+
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 5 455689999999999999999976553
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=2.2e-15 Score=145.02 Aligned_cols=174 Identities=12% Similarity=0.130 Sum_probs=114.0
Q ss_pred CCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHH
Q 013393 11 PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE 87 (444)
Q Consensus 11 pg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e 87 (444)
+++.........+-.+.+.+.+ .+++|. +|||||||+|.++.++++. .|+|+++|+..+..++... .+
T Consensus 37 ~~~~~tL~eAQ~~k~~~~~~~l-----~l~~G~---~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~-~~ 107 (285)
T d1kpga_ 37 ERDDMTLQEAQIAKIDLALGKL-----GLQPGM---TLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-AN 107 (285)
T ss_dssp SSTTCCHHHHHHHHHHHHHTTT-----TCCTTC---EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HT
T ss_pred CCCCCCHHHHHHHHHHHHHHHc-----CCCCCC---EEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHH-Hh
Confidence 3334444444444444444444 345555 9999999999999999874 5666666655544333222 22
Q ss_pred cC--CCcEEEEecCccCCCCCCCccEEEecccccccc--ccHHHHHHHHHhhcCCCeEEEEEcCCC------CCC---Ch
Q 013393 88 RG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEA------YAH---DP 154 (444)
Q Consensus 88 ~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~~------~~~---~~ 154 (444)
.+ .++.+...|...++ ++||.|++..+ ++|. .+...+|+++.|+|||||.+++.+... ..+ ..
T Consensus 108 ~g~~~~v~~~~~d~~~~~---~~fD~i~si~~-~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~ 183 (285)
T d1kpga_ 108 SENLRSKRVLLAGWEQFD---EPVDRIVSIGA-FEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMS 183 (285)
T ss_dssp CCCCSCEEEEESCGGGCC---CCCSEEEEESC-GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCH
T ss_pred hhhhhhhHHHHhhhhccc---ccccceeeehh-hhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcc
Confidence 23 35677777776664 67999999985 5665 556899999999999999999854221 000 00
Q ss_pred -hhH--------H--------HHHHHHHHHHhcCeEEEeeecceeEeeccCchhhHhhcC
Q 013393 155 -ENR--------R--------IWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRV 197 (444)
Q Consensus 155 -~~~--------~--------~~~~l~~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~~ 197 (444)
... . ....+..++++.||++....+....|.+++..+...+..
T Consensus 184 ~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~~~hYarTl~~W~~~f~~ 243 (285)
T d1kpga_ 184 FTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQA 243 (285)
T ss_dssp HHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhcccccchhhHHHHHHHHHHHHHH
Confidence 000 0 113667789999999999888877888887776665543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.57 E-value=2.9e-15 Score=141.84 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=95.4
Q ss_pred CCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC---CCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~---~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|+++. ..+.+.+.+++.+++++++||+|+|..+
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~-----~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v 167 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK-----HMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCH-----HHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCH-----HHHHhhhccccccccceeEEccccccccCCCccceEEeecc
Confidence 4458999999999999988753 466666654 5555565542 2367888999999998999999999995
Q ss_pred cccccccHH--HHHHHHHhhcCCCeEEEEEcCCCCCC-------ChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 118 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 118 ~l~~~~d~~--~~L~ei~rvLkPGG~lvis~p~~~~~-------~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++|+++.+ .+|+++.++|||||++++.++..... .....+....+.++++++||+++....
T Consensus 168 -l~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 168 -AIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp -GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred -ccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 77776654 88999999999999999976432110 001112345788899999998876543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=2e-15 Score=144.99 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=99.2
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCC--cEEEEecCccCCCCCCCccEE
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELA 112 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~--~~~~~~d~~~lp~~~~sFDlI 112 (444)
.+++|. +|||||||+|.++.+++++ .|+|+++++.++..++ +.+++.+.+ +.+...|...+ +++||.|
T Consensus 49 ~l~~g~---~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i 121 (280)
T d2fk8a1 49 DLKPGM---TLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWEDF---AEPVDRI 121 (280)
T ss_dssp CCCTTC---EEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGGC---CCCCSEE
T ss_pred CCCCCC---EEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhhhhh---ccchhhh
Confidence 455665 8999999999999998863 5677766665543333 223333443 34444454443 4689999
Q ss_pred Eecccccccc--ccHHHHHHHHHhhcCCCeEEEEEcCCCC------CCChh-h-----------HHH--------HHHHH
Q 013393 113 HCSRCRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAY------AHDPE-N-----------RRI--------WNAMY 164 (444)
Q Consensus 113 ~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~~~------~~~~~-~-----------~~~--------~~~l~ 164 (444)
+|..+ ++|. ++...+|+++.++|||||.+++++.... .+... . ..+ -.++.
T Consensus 122 ~si~~-~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~ 200 (280)
T d2fk8a1 122 VSIEA-FEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMV 200 (280)
T ss_dssp EEESC-GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHH
T ss_pred hHhhH-HHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhh
Confidence 99995 6665 4558999999999999999998652211 00000 0 001 13577
Q ss_pred HHHHhcCeEEEeeecceeEeeccCchhhHhhc
Q 013393 165 DLLKSMCWKIVSKKDQTVIWAKPISNSCYLKR 196 (444)
Q Consensus 165 ~l~~~~gf~~v~~~~~~~~w~k~l~~~c~~~~ 196 (444)
+.+++.||++....+....|.+++..+...+.
T Consensus 201 ~~~e~aGf~v~~~~~~~~hYa~TL~~W~~~f~ 232 (280)
T d2fk8a1 201 EHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQ 232 (280)
T ss_dssp HHHHHTTCBCCCCEECHHHHHHHHHHHHHHHH
T ss_pred hhHHhhccccceeeecccCHHHHHHHHHHHHH
Confidence 78889999888877766677777666655443
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.54 E-value=6.2e-15 Score=141.42 Aligned_cols=102 Identities=14% Similarity=0.244 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
++.+|||||||+|.++..+++. .|+|+|+++.++..+. +.+...+.++.+...|+..++++ ++||+|+|+. +
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~-~ 103 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA-F 103 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH-HHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES-C
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh-ccccccccccccccccccccccc-CCceEEEEeh-h
Confidence 3458999999999999999862 4678877766554443 22333456788889999988876 5799999999 5
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++|.+++..+|+++.++|||||++++.+|.
T Consensus 104 l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 104 LLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 888899999999999999999999998875
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.54 E-value=1.5e-14 Score=133.77 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=68.9
Q ss_pred eEEEECCCcchHHHHHhhC------CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 47 NVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~------~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
+|||||||+|..+..|++. +|+|+|+|+. |++.|+++ +....+........+++.+.||+|+|+.
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~-----ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP-----MVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHH-----HHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred EEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHH-----HHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 8999999999999988863 3566655554 44555443 3333333333333445556899999988
Q ss_pred cccccc--ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 117 CRIDWL--QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 117 ~~l~~~--~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
++||. ++...+|++++|+|||||.|+++++.
T Consensus 117 -~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 117 -TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp -CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -eccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 47775 46779999999999999999998654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.53 E-value=1.3e-14 Score=135.70 Aligned_cols=101 Identities=19% Similarity=0.369 Sum_probs=77.6
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
+++|||||||+|.++..|+++ .++|+|+|+.++..++ +.+...+.++.+.+.|+..++++ ++||+|+|....+++.
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~ 115 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYI 115 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGC
T ss_pred CCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhccc-ccccccceeeeeeecc
Confidence 358999999999999999986 4666666665554443 22334477899999999888764 6899999975556664
Q ss_pred c---cHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 123 Q---RDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 123 ~---d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
. +...+|++++++|||||.|++...
T Consensus 116 ~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 116 IDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 3 556799999999999999998543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=3.2e-14 Score=134.51 Aligned_cols=141 Identities=18% Similarity=0.231 Sum_probs=100.9
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCCC
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP 91 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~~ 91 (444)
||.-|....-.++.+.+.. +++. +|||+|||+|.++..+++. .|+|+|+++.++..++ +.++.++.+
T Consensus 100 GTG~H~TT~l~l~~l~~~~-------~~g~---~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~ 168 (254)
T d2nxca1 100 GTGHHETTRLALKALARHL-------RPGD---KVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVR 168 (254)
T ss_dssp --CCSHHHHHHHHHHHHHC-------CTTC---EEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCC
T ss_pred CccccchhhHHHHHHHhhc-------CccC---EEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCc
Confidence 4444444444444444333 2344 8999999999999888773 6899999998886666 456667888
Q ss_pred cEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC
Q 013393 92 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 171 (444)
Q Consensus 92 ~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g 171 (444)
..+...|... +++.++||+|+|+.. . .....++.++.++|||||+++++... ...-+.+.+.+++.|
T Consensus 169 ~~~~~~d~~~-~~~~~~fD~V~ani~-~---~~l~~l~~~~~~~LkpGG~lilSgil--------~~~~~~v~~~~~~~G 235 (254)
T d2nxca1 169 PRFLEGSLEA-ALPFGPFDLLVANLY-A---ELHAALAPRYREALVPGGRALLTGIL--------KDRAPLVREAMAGAG 235 (254)
T ss_dssp CEEEESCHHH-HGGGCCEEEEEEECC-H---HHHHHHHHHHHHHEEEEEEEEEEEEE--------GGGHHHHHHHHHHTT
T ss_pred eeEEeccccc-cccccccchhhhccc-c---ccHHHHHHHHHHhcCCCcEEEEEecc--------hhhHHHHHHHHHHCC
Confidence 8888877554 345678999998752 2 33567899999999999999997532 122457888899999
Q ss_pred eEEEeee
Q 013393 172 WKIVSKK 178 (444)
Q Consensus 172 f~~v~~~ 178 (444)
|+.+...
T Consensus 236 f~~~~~~ 242 (254)
T d2nxca1 236 FRPLEEA 242 (254)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9877654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.3e-14 Score=138.35 Aligned_cols=92 Identities=24% Similarity=0.404 Sum_probs=77.2
Q ss_pred CCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
..+|||||||+|.++..|++. .++|+|+ ++.+++.|+++..++.+.++|...+|+++++||+|+|... .+
T Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~-----s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~ 158 (268)
T d1p91a_ 85 ATAVLDIGCGEGYYTHAFADALPEITTFGLDV-----SKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-PC 158 (268)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEES-----CHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-CC
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCEEEEecc-----hHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCC-HH
Confidence 458999999999999999875 3455554 5567778888888999999999999999999999999873 44
Q ss_pred ccccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 121 WLQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 121 ~~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
+ ++|+.|+|||||++++++|..
T Consensus 159 ~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 159 K-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp C-------HHHHHHHEEEEEEEEEEEECT
T ss_pred H-------HHHHHHHhCCCcEEEEEeeCC
Confidence 3 578999999999999998764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.49 E-value=3.4e-14 Score=128.75 Aligned_cols=97 Identities=20% Similarity=0.398 Sum_probs=76.4
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEeccccccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 123 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~ 123 (444)
+|||||||+|..+.+|+++ .|+|+|+++.++..+... +.+.+. ++.+...|...+++ +++||+|+|+.+ ++|++
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~-~~~~~ 109 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERI-KAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVV-MMFLE 109 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESC-GGGSC
T ss_pred cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHH-hhhccccchhhhheecccccc-cccccEEEEeee-eecCC
Confidence 8999999999999999986 577777777666555433 333444 46788888888876 578999999985 77764
Q ss_pred c--HHHHHHHHHhhcCCCeEEEEEc
Q 013393 124 R--DGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 124 d--~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+ ...+++++.++|+|||++++..
T Consensus 110 ~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 110 AQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp TTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 3589999999999999999865
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.46 E-value=4.3e-14 Score=132.98 Aligned_cols=101 Identities=19% Similarity=0.342 Sum_probs=76.1
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCC-CCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPY-PSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~-~~~sFDlI~~~~~~l 119 (444)
.+|||||||+|..+..+++. .|+|+|+|+.++..+..+ +.+.+ .++.+.++|+...++ .+++||+|+|.. ++
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~-~l 103 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF-SF 103 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES-CG
T ss_pred CEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcc-ee
Confidence 38999999999988888763 478888877666555422 22222 357788889877665 467899999998 46
Q ss_pred ccc----ccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 120 DWL----QRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 120 ~~~----~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
||. .+...+|+++.++|||||+|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 664 23458999999999999999997665
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.2e-14 Score=133.67 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=76.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc-----C-CCcEEE--EecCc----
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-----G-IPSTLG--VLGTK---- 100 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~-----~-~~~~~~--~~d~~---- 100 (444)
.+...++.-+|||||||+|.++..+++. .-..+.+.++|.++.+++.++++ . ..+.+. ..+.+
T Consensus 34 ~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (280)
T d1jqea_ 34 RIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQS 113 (280)
T ss_dssp TTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHH
T ss_pred HhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcc
Confidence 3433333347999999999998877652 11234455556667777766654 1 123332 22222
Q ss_pred --cCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 101 --RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 101 --~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+.++++||+|+|.. ++||.+|+..+++++.++|+|||++++..+.
T Consensus 114 ~~~~~~~~~~fD~I~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 114 RMLEKKELQKWDFIHMIQ-MLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp HHTTSSSCCCEEEEEEES-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhcccCCCCceeEEEEcc-ceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 2356688999999999 4888899999999999999999999987654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.43 E-value=4.8e-13 Score=125.96 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=88.0
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
..++|||||||+|.++..++++ .++++|+ +..+..+..+ ..+.+ .++.+...|+.. +.+ .+||+|+++.+
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~v 155 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSY-LKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSFV 155 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHH-HHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEESC
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHH-HHHhhcccchhhccccchh-hcc-cchhheeeccc
Confidence 3468999999999999999874 4566776 4344444433 33333 357777777643 233 57999999985
Q ss_pred cccccccHH--HHHHHHHhhcCCCeEEEEEcCCCCCC--ChhhHH---------------HHHHHHHHHHhcCeEEEeee
Q 013393 118 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH--DPENRR---------------IWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 118 ~l~~~~d~~--~~L~ei~rvLkPGG~lvis~p~~~~~--~~~~~~---------------~~~~l~~l~~~~gf~~v~~~ 178 (444)
+|+.++.. ++|++++++|||||++++.+...... ...... .-.++.++++++||+++...
T Consensus 156 -lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~ 234 (253)
T d1tw3a2 156 -LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 234 (253)
T ss_dssp -GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred -cccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 66655553 78999999999999999976432211 111100 12467889999999877654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.43 E-value=6.8e-14 Score=124.92 Aligned_cols=96 Identities=10% Similarity=-0.009 Sum_probs=71.6
Q ss_pred eEEEECCCcchHHHHHhhCCceEEEcCcccchHHHHHHHHHc-----------------CCCcEEEEecCccCC-CCCCC
Q 013393 47 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----------------GIPSTLGVLGTKRLP-YPSRS 108 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~~V~gvdis~~dis~a~i~~a~e~-----------------~~~~~~~~~d~~~lp-~~~~s 108 (444)
+|||+|||+|..+.+|+++ |.++.+.|+|+.+++.|+++ +....+...|...++ .+..+
T Consensus 23 rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 99 (201)
T d1pjza_ 23 RVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 99 (201)
T ss_dssp EEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred EEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccc
Confidence 8999999999999999986 23444445556666666654 233466677776665 33578
Q ss_pred ccEEEecccccccccc--HHHHHHHHHhhcCCCeEEEEEc
Q 013393 109 FELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 109 FDlI~~~~~~l~~~~d--~~~~L~ei~rvLkPGG~lvis~ 146 (444)
||+|+++. +++++.+ ...+++++.++|||||++++..
T Consensus 100 ~D~i~~~~-~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 100 CAAFYDRA-AMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EEEEEEES-CGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred eeEEEEEe-eeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 99999988 4666543 4689999999999999988754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.42 E-value=1.7e-13 Score=127.68 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=94.2
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-CCCCCCccEE
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELA 112 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p~~~~sFDlI 112 (444)
.++||. +|||+|||+|.++.++++. .|+|+|+++.++..+. +.+.. ..+......|.... ++.+..||++
T Consensus 71 ~ikpG~---~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~-~~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 71 PIKRDS---KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAE-RENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCTTC---EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTT-CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCCCC---EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhh-hcccceEEEeeccCcccccccceeE
Confidence 355665 8999999999999999873 5888988887664443 22222 34555555664443 3556677776
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-CChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
++.. .+++..+...++.++.++|||||+++++...... ........+.+..+.+++.||++++...
T Consensus 146 ~i~~-~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~id 212 (230)
T d1g8sa_ 146 VIYE-DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVD 212 (230)
T ss_dssp EEEE-CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred Eeec-cccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 6554 4666678889999999999999999987533211 1122234567888899999999887643
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.40 E-value=1e-12 Score=118.00 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEe
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVL 97 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~ 97 (444)
.+-...+...+.. .++. +|||+|||+|.++..+++. .|+++|+++.++..+..+ +++.+ .++.+...
T Consensus 19 ~eir~~il~~l~~-----~~g~---~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n-~~~~gl~~~v~~~~g 89 (186)
T d1l3ia_ 19 MEVRCLIMCLAEP-----GKND---VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEG 89 (186)
T ss_dssp HHHHHHHHHHHCC-----CTTC---EEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEES
T ss_pred HHHHHHHHHhcCC-----CCCC---EEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHH-HHHcCCCcceEEEEC
Confidence 3343455555543 3444 8999999999999999884 688888888776555543 33444 36788888
Q ss_pred cCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 98 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 98 d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
|+.+.+++.+.||.|+|... . .+...+++++.+.|||||++++.... .+.-..+.+.+++.+|..
T Consensus 90 da~~~~~~~~~~D~v~~~~~-~---~~~~~~~~~~~~~LkpgG~lvi~~~~--------~e~~~~~~~~l~~~~~~~ 154 (186)
T d1l3ia_ 90 DAPEALCKIPDIDIAVVGGS-G---GELQEILRIIKDKLKPGGRIIVTAIL--------LETKFEAMECLRDLGFDV 154 (186)
T ss_dssp CHHHHHTTSCCEEEEEESCC-T---TCHHHHHHHHHHTEEEEEEEEEEECB--------HHHHHHHHHHHHHTTCCC
T ss_pred chhhcccccCCcCEEEEeCc-c---ccchHHHHHHHHHhCcCCEEEEEeec--------cccHHHHHHHHHHcCCCe
Confidence 88877777789999998863 2 34568999999999999999986543 122334566777777743
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.5e-13 Score=127.56 Aligned_cols=143 Identities=16% Similarity=0.109 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc----CCCc
Q 013393 20 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GIPS 92 (444)
Q Consensus 20 g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~----~~~~ 92 (444)
....+.+.+.+.+.. +| ++|||||||+|..+.++++. .++++|+++ .+++.|+++ +.++
T Consensus 38 w~~~~~~~la~~~~~------~g---~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~-----~~~~~a~~~~~~~~~~~ 103 (229)
T d1zx0a1 38 WETPYMHALAAAASS------KG---GRVLEVGFGMAIAASKVQEAPIDEHWIIECND-----GVFQRLRDWAPRQTHKV 103 (229)
T ss_dssp GGHHHHHHHHHHHTT------TC---EEEEEECCTTSHHHHHHHTSCEEEEEEEECCH-----HHHHHHHHHGGGCSSEE
T ss_pred HHHHHHHHHHHhhcc------CC---CeEEEeeccchHHHHHHHHcCCCeEEEeCCCH-----HHHHHHHHHhhhccccc
Confidence 345666666666642 23 38999999999999999875 355565555 444555443 3445
Q ss_pred EEEEecCcc--CCCCCCCccEEEe-----ccccccccccHHHHHHHHHhhcCCCeEEEEEcCCC-----CCCChhhHHHH
Q 013393 93 TLGVLGTKR--LPYPSRSFELAHC-----SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-----YAHDPENRRIW 160 (444)
Q Consensus 93 ~~~~~d~~~--lp~~~~sFDlI~~-----~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~-----~~~~~~~~~~~ 160 (444)
.+...+... .++++++||.|+. .. .+++..+...+++++.|+|||||+|++..... ..........+
T Consensus 104 ~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~-~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (229)
T d1zx0a1 104 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSE-ETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMF 182 (229)
T ss_dssp EEEESCHHHHGGGSCTTCEEEEEECCCCCBG-GGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHH
T ss_pred ccccccccccccccccccccceeeccccccc-ccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhh
Confidence 555555333 3567889999984 33 45566788899999999999999998843111 00111111222
Q ss_pred -HHHHHHHHhcCeEEEee
Q 013393 161 -NAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 161 -~~l~~l~~~~gf~~v~~ 177 (444)
..+...+.+.||+....
T Consensus 183 ~~~~~~~l~~agF~~~~i 200 (229)
T d1zx0a1 183 EETQVPALLEAGFRRENI 200 (229)
T ss_dssp HHHTHHHHHHTTCCGGGE
T ss_pred hhHHHHHHHHCCCeeEEE
Confidence 34456677788865544
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.39 E-value=4.3e-13 Score=121.28 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=88.4
Q ss_pred cCCeeecCCCCccc-cccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHH
Q 013393 4 NGEKINFPGGGTHF-HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHEN 80 (444)
Q Consensus 4 ~g~~~~fpg~gt~f-~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a 80 (444)
.|+.+.|......| ..+.+.-.+.+.+.++. ...++|||+|||+|.++..+++. .|+++|+++.++..+
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~--------~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a 90 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVV--------DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLA 90 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC--------CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCc--------CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhH
Confidence 45666662221123 33334334556666543 22348999999999999999874 678888877666555
Q ss_pred HHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEecccccccccc-HHHHHHHHHhhcCCCeEEEEEc
Q 013393 81 QIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 81 ~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d-~~~~L~ei~rvLkPGG~lvis~ 146 (444)
..+..... ..++.+...|..+ ++++++||+|+|+.. +|+..+ ...+++++.+.|||||.+++..
T Consensus 91 ~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 91 KENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP-IRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp HHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC-STTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEccc-EEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 43333222 2346777777655 556789999999874 555444 3689999999999999988754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.3e-13 Score=129.01 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=85.8
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCc-----------------------------
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS----------------------------- 92 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~----------------------------- 92 (444)
..+|||||||+|.++..++.. .|+|+|+++.++..++.+... .....
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK-EPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh-ccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 348999999999988777653 477777777666554433221 11110
Q ss_pred --EEEEe----cCccCCCCCCCccEEEecccccccc----ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCC---h----h
Q 013393 93 --TLGVL----GTKRLPYPSRSFELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEAYAHD---P----E 155 (444)
Q Consensus 93 --~~~~~----d~~~lp~~~~sFDlI~~~~~~l~~~----~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~---~----~ 155 (444)
..... +....++++++||+|+|..+ +||. ++...+++++.++|||||+++++++...... . .
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLA-MECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhcccccccccccccccccCCcccEEeehhh-HHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 01111 11223567889999999985 6665 3566899999999999999999764421100 0 0
Q ss_pred hHHHHHHHHHHHHhcCeEEEeee
Q 013393 156 NRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 156 ~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..-...++.++++++||+++...
T Consensus 210 ~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCEEEEEE
Confidence 00123578899999999987764
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.36 E-value=1e-12 Score=120.45 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=88.8
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEE
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAH 113 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~ 113 (444)
.++||. +|||+|||+|..+.++++ ..|+|+|+++.++..+. +.++.+ .++.+...|....+.....+|.+.
T Consensus 53 ~lkpg~---~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~-~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 53 KLRGDE---RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRER-NNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCSSC---EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHC-SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCC---EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhcc-CCceEEEeeccCccccccccceEE
Confidence 566776 999999999999998886 25899998887776554 334443 477777777666554444444443
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCC-CChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~-~~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
+..+.+++..+...+++++.++|||||++++....... ...+....+......++ .||++++..
T Consensus 128 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~E~i 192 (209)
T d1nt2a_ 128 LIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIVKHG 192 (209)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred EEEecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEEEEE
Confidence 32223555577789999999999999999986422100 01122234555555554 589887654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=2.3e-13 Score=130.63 Aligned_cols=101 Identities=18% Similarity=0.281 Sum_probs=70.0
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcCC-----CcEEEEecCcc----CCCCCCCccEEE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-----PSTLGVLGTKR----LPYPSRSFELAH 113 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~~-----~~~~~~~d~~~----lp~~~~sFDlI~ 113 (444)
.++|||+|||+|.++..|+++ .|+|+|+|+.++..+..+.. +++. ...+...+... +|. .++||+|+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v~ 134 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW-NRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAVI 134 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHH-hcccccccceeeeeeccccccccccCC-CCCceEEE
Confidence 348999999999999999986 56777766666544442222 2222 22333444322 333 46899999
Q ss_pred ecccccccccc-------HHHHHHHHHhhcCCCeEEEEEcC
Q 013393 114 CSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 114 ~~~~~l~~~~d-------~~~~L~ei~rvLkPGG~lvis~p 147 (444)
|..++++|..+ ...+|+++.++|||||+|++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 98766777543 45799999999999999999654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.34 E-value=3.8e-12 Score=116.24 Aligned_cols=120 Identities=11% Similarity=0.171 Sum_probs=89.7
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~l~ 120 (444)
.|||||||+|.++..+++ ..++|+|+++..+..+.....+....++.+..+|+..+. ++++++|.|++.+ ..+
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f-p~P 110 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF-SDP 110 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES-CCC
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc-ccc
Confidence 699999999999999987 368899888877766654433333447888888887765 7889999999877 466
Q ss_pred ccccH--------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 121 WLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 121 ~~~d~--------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
|.... ..++.++.|+|||||.|.+.+.. ...+..+.+.+.+.++...
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~--------~~y~~~~~~~~~~~~~~~~ 165 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--------RGLFEYSLKSFSEYGLLLT 165 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--------HHHHHHHHHHHHHHTCEEE
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC--------hHHHHHHHHHHHHCCCccc
Confidence 64433 47999999999999999996422 2335566666766665443
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.32 E-value=6.7e-12 Score=118.40 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=85.5
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 117 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~ 117 (444)
..++|||||||+|.++..++++ .++++|+ +..+..+. +...+.+. .+.+...|... +.| .+||+|++..+
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERAR-RRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV 156 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHH-HHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence 3458999999999999999884 5677776 33332222 23333333 35555555443 444 46999999985
Q ss_pred cccccccH--HHHHHHHHhhcCCCeEEEEEcCCCC---CCChhhHH---------------HHHHHHHHHHhcCeEEEee
Q 013393 118 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY---AHDPENRR---------------IWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 118 ~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~~---~~~~~~~~---------------~~~~l~~l~~~~gf~~v~~ 177 (444)
+|+.++. ..+|++++++|||||++++.+.... ...+.... ...++.++++++||+++..
T Consensus 157 -Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~ 235 (256)
T d1qzza2 157 -LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 235 (256)
T ss_dssp -GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred -ccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEE
Confidence 6655554 4789999999999999999764321 11111100 1347889999999988876
Q ss_pred e
Q 013393 178 K 178 (444)
Q Consensus 178 ~ 178 (444)
.
T Consensus 236 ~ 236 (256)
T d1qzza2 236 R 236 (256)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.1e-12 Score=118.39 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=71.4
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc----------------------CCCcEEEEecCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----------------------GIPSTLGVLGTKR 101 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~----------------------~~~~~~~~~d~~~ 101 (444)
.+|||+|||+|..+.+|++. .|+|+|+| +.+++.|+++ +.++.+.+.|...
T Consensus 47 ~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S-----~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 47 LRVFFPLCGKAVEMKWFADRGHSVVGVEIS-----ELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CEEEETTCTTCTHHHHHHHTTCEEEEECSC-----HHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CEEEEeCCCCcHHHHHHHhCCCcEEEEeCC-----HHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 38999999999999999996 45555555 4555555443 2356677888766
Q ss_pred CC-CCCCCccEEEecccccccc--ccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 102 LP-YPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 102 lp-~~~~sFDlI~~~~~~l~~~--~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
++ ...+.||+|+...+ +++. ++...+++++.++|||||++++..
T Consensus 122 l~~~~~~~fd~i~~~~~-l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGA-LVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp GGGSCCCCEEEEEESSS-TTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCceeEEEEEEE-EEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 64 55789999999885 5554 345689999999999999988764
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.27 E-value=5.2e-12 Score=118.70 Aligned_cols=121 Identities=10% Similarity=0.143 Sum_probs=87.7
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccE
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFEL 111 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDl 111 (444)
+++||. +|||+|||+|.++.+|++. .|+++|+++..+..+..++.+.. ..++.+...|..+. +++++||.
T Consensus 82 ~i~pG~---rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~ 157 (250)
T d1yb2a1 82 GLRPGM---DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDA 157 (250)
T ss_dssp CCCTTC---EEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEE
T ss_pred CCCCcC---EEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeee
Confidence 567776 9999999999999998862 57788776654444443332221 24677888887665 45788999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEe
Q 013393 112 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 112 I~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~ 176 (444)
|++. .+++..++.++.++|||||++++..|.. .+..++.+.+++.||..+.
T Consensus 158 V~ld------~p~p~~~l~~~~~~LKpGG~lv~~~P~i--------~Qv~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 158 VIAD------IPDPWNHVQKIASMMKPGSVATFYLPNF--------DQSEKTVLSLSASGMHHLE 208 (250)
T ss_dssp EEEC------CSCGGGSHHHHHHTEEEEEEEEEEESSH--------HHHHHHHHHSGGGTEEEEE
T ss_pred eeec------CCchHHHHHHHHHhcCCCceEEEEeCCc--------ChHHHHHHHHHHCCCceeE
Confidence 9864 2566689999999999999999977752 3345666777888997553
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.26 E-value=4.2e-11 Score=109.11 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=88.4
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEecccccc
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRID 120 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~~~~~l~ 120 (444)
.|||||||+|.++..+++. .++|+|+++..+..+..+..+..-.++.+...|+..+. +++.++|.|++.+ .-+
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-PdP 112 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-SDP 112 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-CCC
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-ccc
Confidence 6999999999999999873 67899998877766654443333457889889887765 7789999999877 466
Q ss_pred ccccH--------HHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 121 WLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 121 ~~~d~--------~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
|.... ..+|+++.++|||||.|.+++.. ...+..+.+.+...++...
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~--------~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--------RGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--------HHHHHHHHHHHHHHTCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC--------ccHHHHHHHHHHHCCcccc
Confidence 64332 58999999999999999986532 2234455556666666543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=9.9e-13 Score=124.59 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=83.4
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC------------------------------C
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI------------------------------P 91 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~------------------------------~ 91 (444)
+++|||||||+|.++...+.. .|+++|+++.++..++.....+.+. .
T Consensus 55 g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T d2g72a1 55 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 134 (263)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred CcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhh
Confidence 458999999999887655542 5778877776654443221110000 0
Q ss_pred cEEEEecCcc------CCCCCCCccEEEeccccccccc----cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChh------
Q 013393 92 STLGVLGTKR------LPYPSRSFELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPE------ 155 (444)
Q Consensus 92 ~~~~~~d~~~------lp~~~~sFDlI~~~~~~l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~------ 155 (444)
......|... .+.+.++||+|+|.+| +|++. +...+++++.++|||||+|++.++........
T Consensus 135 ~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~-l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~ 213 (263)
T d2g72a1 135 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 213 (263)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hccccccccCCCccccCCcCcCccCeeeeHHH-HHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccc
Confidence 0122233321 2344678999999995 66653 45689999999999999999876432211000
Q ss_pred -hHHHHHHHHHHHHhcCeEEEeee
Q 013393 156 -NRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 156 -~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
..-..+++.+++++.||+++..+
T Consensus 214 ~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 214 VVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEEEEE
Confidence 00123578999999999887654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.26 E-value=7.6e-12 Score=118.40 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=88.8
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sF 109 (444)
++.||. +|||+|||+|+++.+|++. .|+++|+++..+..+..++.... ..++.+.+.|..+.++++++|
T Consensus 93 ~i~PG~---~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~f 169 (264)
T d1i9ga_ 93 DIFPGA---RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSV 169 (264)
T ss_dssp TCCTTC---EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCE
T ss_pred CCCCCC---EEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCc
Confidence 456666 9999999999999999873 68888887766555544333221 346788888988888999999
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEE
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 174 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~ 174 (444)
|.|++. .+++..++.++.++|||||++++..|.. .+....++.+..+.+|..
T Consensus 170 DaV~ld------lp~P~~~l~~~~~~LkpGG~lv~~~P~i-------~Qv~~~~~~l~~~~~f~~ 221 (264)
T d1i9ga_ 170 DRAVLD------MLAPWEVLDAVSRLLVAGGVLMVYVATV-------TQLSRIVEALRAKQCWTE 221 (264)
T ss_dssp EEEEEE------SSCGGGGHHHHHHHEEEEEEEEEEESSH-------HHHHHHHHHHHHHSSBCC
T ss_pred ceEEEe------cCCHHHHHHHHHhccCCCCEEEEEeCcc-------ChHHHHHHHHHHcCCeec
Confidence 999852 4777899999999999999999977763 122333344444567754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=1.7e-11 Score=112.45 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=72.8
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAH 113 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~ 113 (444)
++++. +|||||||+|.++..+++. .|+++|+++..+..+..+.......+..+...|....++.+++||+|+
T Consensus 73 l~~g~---~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~ 149 (213)
T d1dl5a1 73 LDKGM---RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIF 149 (213)
T ss_dssp CCTTC---EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred ccccc---eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhh
Confidence 45555 9999999999999888762 488888887766655544443334567777778777666678899999
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
|..+ +++.+ .++.+.|||||++++..
T Consensus 150 ~~~~-~~~~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 150 VTVG-VDEVP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp ECSB-BSCCC------HHHHHHEEEEEEEEEEB
T ss_pred hhcc-HHHhH------HHHHHhcCCCcEEEEEE
Confidence 9884 66543 35678899999999843
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=4.5e-11 Score=113.27 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=86.5
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCccCCCCCCCcc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFE 110 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~lp~~~~sFD 110 (444)
++.||. +|||+|||+|.++.+|++. .|+++|+++..+..+..+.. ..+. ++.+...|. ...++...||
T Consensus 100 ~i~pG~---~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~-~~g~~~~v~~~~~d~-~~~~~~~~~D 174 (266)
T d1o54a_ 100 DVKEGD---RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT-KWGLIERVTIKVRDI-SEGFDEKDVD 174 (266)
T ss_dssp TCCTTC---EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH-HTTCGGGEEEECCCG-GGCCSCCSEE
T ss_pred CCCCCC---EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhccccCcEEEeccc-ccccccccee
Confidence 456666 9999999999999999862 57888888766655554333 3333 344444443 2345667899
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 111 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 111 lI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
.|+. ..+++..++.++.++|||||.+++..|.. .+..++.+.+++.||..+..
T Consensus 175 ~V~~------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~--------~Qv~~~~~~l~~~gF~~i~~ 227 (266)
T d1o54a_ 175 ALFL------DVPDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIEV 227 (266)
T ss_dssp EEEE------CCSCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEEE
T ss_pred eeEe------cCCCHHHHHHHHHhhcCCCCEEEEEeCcc--------cHHHHHHHHHHHCCceeEEE
Confidence 8863 24778889999999999999999877652 34556777788889975543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.16 E-value=8.2e-11 Score=108.87 Aligned_cols=132 Identities=12% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc---CCCCCCCc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSF 109 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---lp~~~~sF 109 (444)
.++||. +|||+|||+|.++.+|++ ..|+++|+++.++..+. +.++. ..+......|... .+.....+
T Consensus 70 ~i~pG~---~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~-~~~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 70 PIKPGK---SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEE-RRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCTTC---EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSS-CTTEEEEECCTTCGGGGTTTCCCE
T ss_pred ccCCCC---EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHh-cCCceEEEEECCCcccccccccce
Confidence 455666 999999999999999987 36899999987765544 23322 2345555555432 33445679
Q ss_pred cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCC-ChhhHHHHHHHHHHHHhcCeEEEeee
Q 013393 110 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-DPENRRIWNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 110 DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~-~~~~~~~~~~l~~l~~~~gf~~v~~~ 178 (444)
|+|++. +++..+...++.++.+.|||||+++++....... .......+.++..+++ .+|++++..
T Consensus 145 D~i~~d---~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~-~gf~iie~i 210 (227)
T d1g8aa_ 145 DVIFED---VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELS-EYFEVIERL 210 (227)
T ss_dssp EEEEEC---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred EEEEEE---ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHH-cCCEEEEEE
Confidence 998864 3444677889999999999999999864322111 1122234455555554 589887653
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3e-11 Score=111.73 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=73.6
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHc-----CCCcEEEEecCccCCCCCC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSR 107 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~-----~~~~~~~~~d~~~lp~~~~ 107 (444)
.++++. +|||||||+|..+..|++ ..|+++|+++..+..+..++.+.. ..++.+...|....+.+++
T Consensus 73 ~l~~g~---~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~ 149 (224)
T d1i1na_ 73 QLHEGA---KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEA 149 (224)
T ss_dssp TSCTTC---EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGC
T ss_pred ccCCCC---eEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhh
Confidence 556666 899999999998887775 268899888876665554443322 2356777888777777778
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+||.|++.. .+++.+ .++.+.|||||++++..
T Consensus 150 ~fD~I~~~~-~~~~ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 150 PYDAIHVGA-AAPVVP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp CEEEEEECS-BBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred hhhhhhhhc-chhhcC------HHHHhhcCCCcEEEEEE
Confidence 999999987 455543 35788999999999843
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=6.5e-11 Score=114.42 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=72.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHc--CCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~--~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++|||||||+|.++..++++ .|+++|.++.+.. ++ +.+++. ..++.+...+..++++++++||+|+|.. ..+
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~-~~~ 113 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW-MGY 113 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC-CBT
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEEeeHHHhcCccccceEEEEee-eee
Confidence 48999999999999999884 5899998876542 22 233333 3467788889999999889999999864 344
Q ss_pred cc---ccHHHHHHHHHhhcCCCeEEEE
Q 013393 121 WL---QRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 121 ~~---~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+. ...+.++....++|||||+++-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 32 2345778888999999999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=8.8e-11 Score=114.38 Aligned_cols=96 Identities=20% Similarity=0.269 Sum_probs=73.0
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEeccc--c
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC--R 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~--~ 118 (444)
++|||||||+|.++..++++ .|+++|.++ +. ....+.+++.+ .++.+...+...+++++++||+|+|... .
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~ 117 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence 38999999999999988874 588999886 33 22333444443 3567888889999999999999998642 2
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEE
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFV 143 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lv 143 (444)
+.+......++.++.|+|||||.++
T Consensus 118 ~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 118 LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eccchhHHHHHHHHHhccCCCeEEE
Confidence 3333556788999999999999986
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=5.7e-11 Score=115.95 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHH--HH-------c
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFA--LE-------R 88 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a--~e-------~ 88 (444)
....+.+.+.+. ++++. +|||+|||+|.++..++. ..++|+|+++.++..+..+.. +. +
T Consensus 137 ~~~~~~~~~~~~-----l~~~~---~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~ 208 (328)
T d1nw3a_ 137 FDLVAQMIDEIK-----MTDDD---LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 208 (328)
T ss_dssp HHHHHHHHHHSC-----CCTTC---EEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcC-----CCCCC---EEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 334444444443 34444 899999999999988875 258899999877655443322 11 2
Q ss_pred CCCcEEEEecCccCCCCCCCc--cEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 89 GIPSTLGVLGTKRLPYPSRSF--ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 89 ~~~~~~~~~d~~~lp~~~~sF--DlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
..++.+..+|+..+++.+..| |+|+++. +.|.++....|.++.++|||||+++...
T Consensus 209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~--~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 209 HAEYTLERGDFLSEEWRERIANTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCSEEEECC--TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CCceEEEECcccccccccccCcceEEEEcc--eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 346889999998888766555 6677654 4455888899999999999999998753
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.1e-10 Score=113.05 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=73.8
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
++|||||||+|.++..++++ .|+++|.++.. ....+.++..+ .++.+...+..+++++.++||+|+|.. ..+
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~--~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~-~~~ 111 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS--DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW-MGY 111 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH--HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC-CBB
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH--hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee-eee
Confidence 38999999999999998874 48899988753 22333444443 347788889999999889999999864 333
Q ss_pred cc---ccHHHHHHHHHhhcCCCeEEEE
Q 013393 121 WL---QRDGILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 121 ~~---~d~~~~L~ei~rvLkPGG~lvi 144 (444)
+. .....++..+.|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 32 3567899999999999999873
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.5e-10 Score=107.95 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=82.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc-----------CCCcEEEEecCcc
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGTKR 101 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~-----------~~~~~~~~~d~~~ 101 (444)
++.||. +|||+|||+|.++.+|++. .|+++|+++..+..++.++.+.. ..++.+...|...
T Consensus 95 ~i~pG~---rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~ 171 (324)
T d2b25a1 95 DINPGD---TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG 171 (324)
T ss_dssp TCCTTC---EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred CCCCCC---EEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh
Confidence 456776 9999999999999999872 58899888876655554443221 2357777888766
Q ss_pred CC--CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHH--hcCeEEEe
Q 013393 102 LP--YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK--SMCWKIVS 176 (444)
Q Consensus 102 lp--~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~--~~gf~~v~ 176 (444)
.. +++.+||.|+.- ++++..++.++.++|||||+|++..|.. .+-..+.+.++ +.+|..+.
T Consensus 172 ~~~~~~~~~fD~V~LD------~p~P~~~l~~~~~~LKpGG~lv~~~P~i--------~Qv~~~~~~l~~~~~~f~~i~ 236 (324)
T d2b25a1 172 ATEDIKSLTFDAVALD------MLNPHVTLPVFYPHLKHGGVCAVYVVNI--------TQVIELLDGIRTCELALSCEK 236 (324)
T ss_dssp CC-------EEEEEEC------SSSTTTTHHHHGGGEEEEEEEEEEESSH--------HHHHHHHHHHHHHTCCEEEEE
T ss_pred cccccCCCCcceEeec------CcCHHHHHHHHHHhccCCCEEEEEeCCH--------HHHHHHHHHHHHcCCCceeeE
Confidence 54 456789999853 2555679999999999999999877663 22233444444 34786554
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=3.5e-10 Score=107.33 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=83.6
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||+|||+|..+..++. ..|+++|+++..+..++. .++..+. ++.+...|... ++++++||+|+|+--.+.
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~-Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~ 187 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR-NAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYID 187 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBC
T ss_pred cceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHH-HHHHhCcccceeeeccccc-ccCCCceeEEEecchhhh
Confidence 4799999999999988876 368888888776665553 3444455 57887777543 345679999999732221
Q ss_pred ------------cc------------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEE
Q 013393 121 ------------WL------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 121 ------------~~------------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v 175 (444)
|- ....+++.++.+.|+|||.+++.... .+...+.+++++.||..+
T Consensus 188 ~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~---------~q~~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 188 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---------QQGEAVRQAFILAGYHDV 257 (274)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---------SCHHHHHHHHHHTTCTTC
T ss_pred hhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc---------hHHHHHHHHHHHCCCCeE
Confidence 10 11236889999999999999994322 224578889999999644
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.91 E-value=9.7e-10 Score=101.26 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=66.4
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEec
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
+++++. +|||||||+|.++..|++ ..|+++|+++.....++... ....++.+...|........++||.|++.
T Consensus 67 ~l~~g~---~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~--~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~ 141 (224)
T d1vbfa_ 67 DLHKGQ---KVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL--SYYNNIKLILGDGTLGYEEEKPYDRVVVW 141 (224)
T ss_dssp TCCTTC---EEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH--TTCSSEEEEESCGGGCCGGGCCEEEEEES
T ss_pred hhcccc---eEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHH--hcccccccccCchhhcchhhhhHHHHHhh
Confidence 345555 899999999999988877 36777777665443333211 12457788888755433345789999998
Q ss_pred cccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 116 RCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 116 ~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
.+ +++.+ ..+.+.|||||++++-
T Consensus 142 ~a-~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 142 AT-APTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp SB-BSSCC------HHHHHTEEEEEEEEEE
T ss_pred cc-hhhhh------HHHHHhcCCCCEEEEE
Confidence 74 55543 3456789999999983
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=3.3e-09 Score=105.71 Aligned_cols=115 Identities=8% Similarity=0.066 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHc------CC-
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER------GI- 90 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~------~~- 90 (444)
...+..+.+.+. ++++. ++||||||+|..+..++. +.++|+|+++.++..+..+..... +.
T Consensus 202 ~~~i~~Il~~l~-----Lkpgd---~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~ 273 (406)
T d1u2za_ 202 PNFLSDVYQQCQ-----LKKGD---TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273 (406)
T ss_dssp HHHHHHHHHHTT-----CCTTC---EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHhC-----CCCCC---EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc
Confidence 444555555554 44555 899999999999988875 258899999887766554433211 12
Q ss_pred --CcEEE-EecCccCCCC---CCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 91 --PSTLG-VLGTKRLPYP---SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 91 --~~~~~-~~d~~~lp~~---~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
...+. ..+....++. -..+|+|+++. .++.++....|.+++|+|||||+++.+.
T Consensus 274 ~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 274 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CCCEEEEESSCSTTCHHHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccceeeeeechhhccccccccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 22222 2222222211 13478888764 4456888899999999999999998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.81 E-value=3e-09 Score=97.86 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=68.1
Q ss_pred CCCCCCCCCeEEEECCCcchHHHHHhhC----------CceEEEcCcccchHHHHHHHHH-----cCCCcEEEEecCccC
Q 013393 38 KLNNGGNIRNVLDVGCGVASFGAYLLSH----------DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL 102 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGtG~~a~~La~~----------~V~gvdis~~dis~a~i~~a~e-----~~~~~~~~~~d~~~l 102 (444)
+++++. +|||||||+|.++..|++. .|+++|..+..+..+..+.... ...++.+...|....
T Consensus 77 ~l~~g~---~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~ 153 (223)
T d1r18a_ 77 HLKPGA---RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG 153 (223)
T ss_dssp TCCTTC---EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC
T ss_pred ccCCCC---eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc
Confidence 556665 9999999999998887652 4778877765444443322111 134678888887665
Q ss_pred CCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 103 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 103 p~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
..+.++||.|++..+ ++..+ ..+.+.|||||++++.
T Consensus 154 ~~~~~~fD~Iiv~~a-~~~~p------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 154 YPPNAPYNAIHVGAA-APDTP------TELINQLASGGRLIVP 189 (223)
T ss_dssp CGGGCSEEEEEECSC-BSSCC------HHHHHTEEEEEEEEEE
T ss_pred cccccceeeEEEEee-chhch------HHHHHhcCCCcEEEEE
Confidence 555678999999874 55443 2467899999999974
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.80 E-value=1.1e-08 Score=96.08 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=98.1
Q ss_pred CCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHH
Q 013393 5 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 81 (444)
Q Consensus 5 g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~ 81 (444)
|-.+.+.-..+.|..+.......+.+.+. ++. +|||+|||+|.++..++++ .|+++|+++..+..+.
T Consensus 78 g~~~~~d~~~~~f~~~~~~er~ri~~~~~-------~g~---~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~ 147 (260)
T d2frna1 78 GIKYKLDVAKIMFSPANVKERVRMAKVAK-------PDE---LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV 147 (260)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHCC-------TTC---EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH
T ss_pred CeeEEeccccccEecCCHHHHHHHHhhcC-------Ccc---EEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHH
Confidence 33444443456676666555555555542 334 8999999999999988863 6888888886654444
Q ss_pred HHHHHHcCC--CcEEEEecCccCCCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHH
Q 013393 82 IQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRI 159 (444)
Q Consensus 82 i~~a~e~~~--~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~ 159 (444)
. .++.++. .+.+..+|+..++. .+.||.|++.. .+ ....++.++.++|+|||++.+....... ......
T Consensus 148 ~-N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~--p~---~~~~~l~~a~~~l~~gG~lh~~~~~~~~--~~~~~~ 218 (260)
T d2frna1 148 E-NIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYHNTVPEK--LMPREP 218 (260)
T ss_dssp H-HHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEEEEEEGG--GTTTTT
T ss_pred H-HHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC--CC---chHHHHHHHHhhcCCCCEEEEEeccccc--cchhhH
Confidence 3 3444444 46777788777653 57899999764 22 2345788899999999998764211100 000112
Q ss_pred HHHHHHHHHhcCeEEEeee
Q 013393 160 WNAMYDLLKSMCWKIVSKK 178 (444)
Q Consensus 160 ~~~l~~l~~~~gf~~v~~~ 178 (444)
...+.++++..|+++....
T Consensus 219 ~e~~~~~~~~~g~~v~~~~ 237 (260)
T d2frna1 219 FETFKRITKEYGYDVEKLN 237 (260)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCceEEEE
Confidence 3456778888899765443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=8.7e-09 Score=99.68 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=80.5
Q ss_pred CeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCcc----CCCCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~----lp~~~~sFDlI~~~~~~ 118 (444)
++|||++||+|.++.+++. +.|+++|+++..+..+..+ ++.++. ++.+...|..+ ++...++||+|++..-.
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n-~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~ 225 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEEN-ARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 225 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHH-HHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCc
Confidence 4899999999999999876 3678888887766555533 334454 57788887544 33446789999985311
Q ss_pred c--------cccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHH-HHHHHHHHhcCe
Q 013393 119 I--------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW-NAMYDLLKSMCW 172 (444)
Q Consensus 119 l--------~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~-~~l~~l~~~~gf 172 (444)
. ....+...++..+.++|||||.+++++-+.... ...+ ..+.+.+...+-
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~----~~~f~~~v~~a~~~a~~ 284 (318)
T d1wxxa2 226 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT----EPLFYAMVAEAAQDAHR 284 (318)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC----HHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC----HHHHHHHHHHHHHHcCC
Confidence 1 112334578899999999999999976553211 1223 334555555553
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.73 E-value=1e-08 Score=93.64 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=72.2
Q ss_pred HHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC
Q 013393 26 LALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL 102 (444)
Q Consensus 26 ~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l 102 (444)
..+.+.+. ++++. +|||||||+|..+..|++ ..|+++|..+.....+..+..+....++.+...|....
T Consensus 68 a~ml~~L~-----l~~g~---~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g 139 (215)
T d1jg1a_ 68 AIMLEIAN-----LKPGM---NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG 139 (215)
T ss_dssp HHHHHHHT-----CCTTC---CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHhhc-----cCccc---eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC
Confidence 34445553 44555 899999999998887775 35888888875554444333333346788888886664
Q ss_pred CCCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 103 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 103 p~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
..+.++||.|++..+ ++..++ .+.+.|||||++++.
T Consensus 140 ~~~~~pfD~Iiv~~a-~~~ip~------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAG-APKIPE------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp CGGGCCEEEEEECSB-BSSCCH------HHHHTEEEEEEEEEE
T ss_pred CcccCcceeEEeecc-cccCCH------HHHHhcCCCCEEEEE
Confidence 445688999998764 554432 245679999999974
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.66 E-value=3e-08 Score=88.86 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=34.4
Q ss_pred CCCCccEEEeccccccccccH--HHHHHHHHhhcCCCeEEEEEcCC
Q 013393 105 PSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 105 ~~~sFDlI~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
+.+.||+|+|.+. +.|..+. .++++++++.|+|||+|++....
T Consensus 129 ~~~~fDvI~CRNV-LiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE 173 (193)
T d1af7a2 129 VPGPFDAIFCRNV-MIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 173 (193)
T ss_dssp CCCCEEEEEECSS-GGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred CCCCccEEEeehh-HHhcCHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 4578999999995 5554444 58999999999999999985443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=3.1e-08 Score=95.94 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=71.7
Q ss_pred eEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc----CCCCCCCccEEEeccc
Q 013393 47 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR----LPYPSRSFELAHCSRC 117 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~----lp~~~~sFDlI~~~~~ 117 (444)
+|||+|||+|.++..++.+ .|+++|+++..+..+.. .++.++. ++.+...|..+ ++...++||+|++..-
T Consensus 148 ~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~-N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP 226 (324)
T d2as0a2 148 RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPP 226 (324)
T ss_dssp EEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHH-HHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCCc
Confidence 8999999999999998874 58888888776655543 3444454 45677777543 2334678999998531
Q ss_pred c-ccc-------cccHHHHHHHHHhhcCCCeEEEEEcCCC
Q 013393 118 R-IDW-------LQRDGILLLELDRLLRPGGYFVYSSPEA 149 (444)
Q Consensus 118 ~-l~~-------~~d~~~~L~ei~rvLkPGG~lvis~p~~ 149 (444)
. ... ..+...++..+.++|||||+|++++...
T Consensus 227 ~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 227 AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 1 111 1234568999999999999999987554
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.64 E-value=8.8e-08 Score=88.98 Aligned_cols=124 Identities=16% Similarity=0.071 Sum_probs=80.6
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
...++|||||||+|.++..++++ .++..|+. ..++.+ .....+.+...|..+ +.| ..|+++++.+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp------~vi~~~-~~~~ri~~~~gd~~~-~~p--~~D~~~l~~v- 148 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP------QVIENA-PPLSGIEHVGGDMFA-SVP--QGDAMILKAV- 148 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH------HHHTTC-CCCTTEEEEECCTTT-CCC--CEEEEEEESS-
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch------hhhhcc-CCCCCeEEecCCccc-ccc--cceEEEEehh-
Confidence 34568999999999999999874 44555542 111111 113456777777543 344 3599999995
Q ss_pred ccccccHH--HHHHHHHhhcCCCeEEEEEcC---CCCCCChhhH-----------------HHHHHHHHHHHhcCeEEEe
Q 013393 119 IDWLQRDG--ILLLELDRLLRPGGYFVYSSP---EAYAHDPENR-----------------RIWNAMYDLLKSMCWKIVS 176 (444)
Q Consensus 119 l~~~~d~~--~~L~ei~rvLkPGG~lvis~p---~~~~~~~~~~-----------------~~~~~l~~l~~~~gf~~v~ 176 (444)
+|..+|.+ .+|+++++.|+|||.+++.+. .......... +...++.++++++||+.+.
T Consensus 149 Lh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~ 228 (244)
T d1fp1d2 149 CHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceE
Confidence 55445544 789999999999999999762 2111111110 0134788999999998765
Q ss_pred e
Q 013393 177 K 177 (444)
Q Consensus 177 ~ 177 (444)
.
T Consensus 229 v 229 (244)
T d1fp1d2 229 V 229 (244)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.59 E-value=1.5e-07 Score=90.82 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=83.3
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCcc----CCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR----LPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~----lp~~~~sFDlI~~~~ 116 (444)
++|||+.||+|.++.+++.. .|+++|+++..+..+..+.....- .++.+...|+.+ +.-..++||+|++.-
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DP 225 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 225 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcC
Confidence 38999999999999887763 588999999877666655444331 246788888533 222356899999842
Q ss_pred c--------cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHH-HHHHHHHHhcCeEEE
Q 013393 117 C--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW-NAMYDLLKSMCWKIV 175 (444)
Q Consensus 117 ~--------~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~-~~l~~l~~~~gf~~v 175 (444)
- ...-..+..+++..+.++|+|||.|++++.+.... .+.+ ..+.+.+.+.+....
T Consensus 226 P~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~----~~~f~~~v~~a~~~~~~~~~ 289 (317)
T d2b78a2 226 PSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT----VSQFKKQIEKGFGKQKHTYL 289 (317)
T ss_dssp CCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC----HHHHHHHHHHHHTTCCCEEE
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC----HHHHHHHHHHHHHHcCCeEE
Confidence 1 11122455689999999999999999987653321 1222 233445555555443
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.52 E-value=5.7e-08 Score=85.35 Aligned_cols=133 Identities=19% Similarity=0.271 Sum_probs=76.9
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHEN 80 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a 80 (444)
+.|..+.+|.+ + ....+.-.+.+-+++.. .+..++ +|||+|||+|.++..++.+ .++++|.++..+..+
T Consensus 9 ~kg~~l~~~~~-~--Rpt~~~v~e~lf~~l~~---~~~~g~---~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~ 79 (171)
T d1ws6a1 9 ARGVALKVPAS-A--RPSPVRLRKALFDYLRL---RYPRRG---RFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLL 79 (171)
T ss_dssp GTTCEECCCTT-C--CCCCHHHHHHHHHHHHH---HCTTCC---EEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred ccCCEeCCCCC-C--CCCcHHHHHHHHHHhhc---cccCCC---eEEEeccccchhhhhhhhccchhhhcccCHHHHhhh
Confidence 35667777764 2 22223333344444432 222333 8999999999999988775 455666555444333
Q ss_pred HHHHHHHcCCCcEEEEecCcc----CCCCCCCccEEEeccccccccccHHHHHHHHH--hhcCCCeEEEEEcCC
Q 013393 81 QIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSPE 148 (444)
Q Consensus 81 ~i~~a~e~~~~~~~~~~d~~~----lp~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~--rvLkPGG~lvis~p~ 148 (444)
. +.++..+....+...+... .....++||+|++.- +|..+....+.++. ..|+|||++++..+.
T Consensus 80 ~-~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP---PY~~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 80 K-ENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP---PYAMDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp H-HHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC---CTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred h-HHHHhhccccceeeeehhcccccccccCCccceeEEcc---ccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 3 2233446666666555332 123457899999864 22233344445443 579999999986543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.45 E-value=1.9e-07 Score=86.60 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccc
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 118 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~ 118 (444)
.+.++|||||||+|.++..++++ +++..|+.+. + +.+ ....++.+...|... +.|. .|+++....+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~-~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDA-PSYPGVEHVGGDMFV-SIPK--ADAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTC-CCCTTEEEEECCTTT-CCCC--CSCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhc-ccCCceEEecccccc-cCCC--cceEEEEEEe
Confidence 34568999999999999999884 5677777543 1 111 123456777777533 4443 4667777644
Q ss_pred ccccccH--HHHHHHHHhhcCCCeEEEEEcCCC---CCCChhhH------------------HHHHHHHHHHHhcCeEEE
Q 013393 119 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEA---YAHDPENR------------------RIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 119 l~~~~d~--~~~L~ei~rvLkPGG~lvis~p~~---~~~~~~~~------------------~~~~~l~~l~~~~gf~~v 175 (444)
..| ++. ..+|+++++.|+|||.+++.+.-. ........ +...++.++++++||+.+
T Consensus 150 h~~-~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~v 228 (243)
T d1kyza2 150 HDW-SDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGF 228 (243)
T ss_dssp TTS-CHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCE
T ss_pred ecC-CHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcE
Confidence 444 433 489999999999999999865321 11111000 112477889999999776
Q ss_pred ee
Q 013393 176 SK 177 (444)
Q Consensus 176 ~~ 177 (444)
..
T Consensus 229 kv 230 (243)
T d1kyza2 229 KV 230 (243)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.45 E-value=4.9e-08 Score=84.03 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=65.7
Q ss_pred CCeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CCCCCCCccEEEecccc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYPSRSFELAHCSRCR 118 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp~~~~sFDlI~~~~~~ 118 (444)
..+|||+|||+|.++...+.+ .|+++|.++..+..... .+...+. ++.+...|... ++...++||+|++..
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~-n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP-- 91 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP-- 91 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC--
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhh-hhhhcccccchhhhcccccccccccccccceeEech--
Confidence 348999999999999887764 57778777765544432 2333333 35666777544 344568899999753
Q ss_pred ccc-cccHHHHHHHHH--hhcCCCeEEEEEcCC
Q 013393 119 IDW-LQRDGILLLELD--RLLRPGGYFVYSSPE 148 (444)
Q Consensus 119 l~~-~~d~~~~L~ei~--rvLkPGG~lvis~p~ 148 (444)
+| .......+..+. +.|+|||.+++..+.
T Consensus 92 -Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 92 -PYAKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp -SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred -hhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 22 123345566553 579999999986544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.38 E-value=3.9e-07 Score=87.17 Aligned_cols=104 Identities=8% Similarity=0.029 Sum_probs=68.2
Q ss_pred CCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC--CCcEEEEecCccC----CCCCCCccEEEecc
Q 013393 45 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL----PYPSRSFELAHCSR 116 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~--~~~~~~~~d~~~l----p~~~~sFDlI~~~~ 116 (444)
.++|||++||+|.++.+++.. .|+++|.+...+..+..+.....- .++.+...|+.+. ....+.||+|++.-
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDP 212 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 212 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECC
Confidence 458999999999999999874 577777776666555544433321 2467888875432 12357899999842
Q ss_pred cc-------ccc--cccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 117 CR-------IDW--LQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 117 ~~-------l~~--~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
-. ..+ ..+...++..+.++|+|||.+++.+.+
T Consensus 213 P~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 213 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 10 111 123356778889999999976665433
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.36 E-value=7.8e-07 Score=82.38 Aligned_cols=123 Identities=9% Similarity=0.022 Sum_probs=80.2
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEeccccc
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l 119 (444)
..++|||||||+|.++..++++ +++..|+.. .++.+. ...++.+...|+.. +.| .+|+++++.+ +
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~------vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~v-L 148 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ------VVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYI-L 148 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH------HHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESC-G
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH------HHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEee-c
Confidence 3458999999999999999874 455666521 222221 13467787778654 333 5799999995 5
Q ss_pred cccccHH--HHHHHHHhhcCCC---eEEEEEcCCCCC--CChhh-----------------HHHHHHHHHHHHhcCeEEE
Q 013393 120 DWLQRDG--ILLLELDRLLRPG---GYFVYSSPEAYA--HDPEN-----------------RRIWNAMYDLLKSMCWKIV 175 (444)
Q Consensus 120 ~~~~d~~--~~L~ei~rvLkPG---G~lvis~p~~~~--~~~~~-----------------~~~~~~l~~l~~~~gf~~v 175 (444)
|..+|.. ++|+++++.|+|| |++++.+.-... ..+.. .+...++.++++++||+.+
T Consensus 149 Hdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~ 228 (244)
T d1fp2a2 149 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHY 228 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEE
T ss_pred ccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceE
Confidence 5445553 7999999999999 777775432110 11100 0123478889999999876
Q ss_pred ee
Q 013393 176 SK 177 (444)
Q Consensus 176 ~~ 177 (444)
..
T Consensus 229 ~i 230 (244)
T d1fp2a2 229 KI 230 (244)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.32 E-value=2.9e-07 Score=82.55 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=49.7
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
++|||+|||+|.++..++.. .|+++|++ +.+++.|+++..++.+...|..+++ ++||+|+|+-
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~~V~~vDid-----~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAESVTAFDID-----PDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEEESC-----HHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECC
T ss_pred CEEEEeCCCCcHHHHHHHHcCCCcccccccC-----HHHHHHHHHccccccEEEEehhhcC---CcceEEEeCc
Confidence 48999999999998777663 47777665 4566777777778899999987764 6799999974
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.31 E-value=2.4e-06 Score=76.66 Aligned_cols=117 Identities=9% Similarity=0.031 Sum_probs=69.2
Q ss_pred CeEEEECCCcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 122 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~~ 122 (444)
.+|||+|||+|.++..++.+ .|+++|+++..+..+. +.++..+.+..+...|...+ ++.||+|+++-- ....
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP-~~~~ 122 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPP-FGSQ 122 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGC---CCCCSEEEECCC-CSSS
T ss_pred CEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhh---CCcCcEEEEcCc-cccc
Confidence 48999999999999877764 5788887775554443 22344467778887777665 367999999752 1111
Q ss_pred c--cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 123 Q--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 123 ~--d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. ....++...... ++.+...... . ......+..+.+..||.+...
T Consensus 123 ~~~~d~~~l~~~~~~---~~~v~~ih~~----~---~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 123 RKHADRPFLLKAFEI---SDVVYSIHLA----K---PEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp STTTTHHHHHHHHHH---CSEEEEEEEC----C---HHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccHHHHHHHHhh---cccchhcccc----h---HHHHHHHHHHHhhcCceEEEE
Confidence 1 112344443333 3333321110 0 112334667788889876544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=3.3e-06 Score=78.34 Aligned_cols=91 Identities=12% Similarity=0.200 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCC--cEEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--STLG 95 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~--~~~~ 95 (444)
..|...+...+.... .......++||+|||+|..+..|+. ..++|+|+++..+.-+..+. +..+.. +.+.
T Consensus 42 ~~~~~~i~~l~~~~~---~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~-~~n~l~~~~~~~ 117 (250)
T d2h00a1 42 LNYIHWVEDLIGHQD---SDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV-EQNNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHCCCC---GGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEE
T ss_pred HHHHHHHHHHhhhhc---cCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHH-HHhCCCcceeee
Confidence 446667777665321 1223345899999999998888876 37888888887766665443 333443 3333
Q ss_pred EecCccC------CCCCCCccEEEecc
Q 013393 96 VLGTKRL------PYPSRSFELAHCSR 116 (444)
Q Consensus 96 ~~d~~~l------p~~~~sFDlI~~~~ 116 (444)
..+.... ...+++||+|+|+-
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNP 144 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNP 144 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred eeccHHhhhhhhhhcccCceeEEEecC
Confidence 3332221 12356899999974
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.27 E-value=4.5e-07 Score=82.41 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=65.0
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHcCC--CcEEEEecCcc-CC-----CCCCCccE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 111 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~~~--~~~~~~~d~~~-lp-----~~~~sFDl 111 (444)
+++|||+|||+|..+..++++ .++++|+++.....++..+ ...+. .+.+..++..+ ++ +..++||+
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceeeeccccccccchhhcccccccce
Confidence 458999999999999998863 5788888776554444333 33343 46777777543 22 44578999
Q ss_pred EEeccccccccccH--HHHHHHHHhhcCCCeEEEE
Q 013393 112 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVY 144 (444)
Q Consensus 112 I~~~~~~l~~~~d~--~~~L~ei~rvLkPGG~lvi 144 (444)
|+.-.. .... ...+.+..++|||||++++
T Consensus 136 ifiD~~----~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 136 VFLDHW----KDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp EEECSC----GGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeeccc----ccccccHHHHHHHhCccCCCcEEEE
Confidence 997532 1222 2457788899999998776
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.24 E-value=4.8e-07 Score=85.08 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=71.4
Q ss_pred CeEEEECCCcchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCCCc--EEEEecCcc-CCCCCCCccEEEeccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTKR-LPYPSRSFELAHCSRCRI 119 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~~~--~~~~~d~~~-lp~~~~sFDlI~~~~~~l 119 (444)
.++||+|||+|..+..+++ ..|+++|+++..+.-++. .++..+... .+...+... ++...++||+|+|+--.+
T Consensus 112 ~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~-Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred cEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHH-HHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 4799999999988877765 368888888876655553 344445433 344444332 222346899999973111
Q ss_pred c----------cc--------ccHHHHHHH-HHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCe
Q 013393 120 D----------WL--------QRDGILLLE-LDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 172 (444)
Q Consensus 120 ~----------~~--------~d~~~~L~e-i~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf 172 (444)
. |- .|.-.++++ +.+.|+|||++++-... .+-..+.+++++.||
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~---------~Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE---------DQVEELKKIVSDTVF 253 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT---------TCHHHHTTTSTTCEE
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH---------HHHHHHHHHHHhCCE
Confidence 1 10 011123333 45789999999984332 223466777777777
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.1e-06 Score=80.00 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=69.3
Q ss_pred CCeEEEECCCcchHHHHHhhC-----CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCcc-CC-----CCCCCccEE
Q 013393 45 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LP-----YPSRSFELA 112 (444)
Q Consensus 45 ~~rVLDVGCGtG~~a~~La~~-----~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~-lp-----~~~~sFDlI 112 (444)
+++|||||||+|.-+.+++++ .++++|.++.....++..+.+.. ...+.+..+++.+ ++ ...++||+|
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i 139 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 139 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence 458999999999999999873 67888887765544443332222 2346677776433 22 235789999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
+... ...+...++..+.+.|+|||.+++-..
T Consensus 140 fiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 140 VVDA----DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EECS----CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEeC----CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 9653 235667889999999999999998543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=3.4e-06 Score=74.45 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=79.9
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 79 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~ 79 (444)
+.|..+.+|.+.. .....+.-.+.+-+++.. .+ .+ .+|||++||+|.++...+.+ .|+.+|.++..+..
T Consensus 10 ~kg~~l~~~~~~~-~RPt~~~vre~lfn~l~~---~~-~~---~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~ 81 (183)
T d2fpoa1 10 WRGRKLPVPDSPG-LRPTTDRVRETLFNWLAP---VI-VD---AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQ 81 (183)
T ss_dssp GTTCEEECCCC-------CHHHHHHHHHHHHH---HH-TT---CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred cCCCEecCCCCCC-cCcCcHHHHHHHHhhhhc---cc-ch---hhhhhhhccccceeeeEEecCcceeEEEEEeechhhH
Confidence 4567788887532 222333334444444432 11 12 28999999999999988775 57778777765544
Q ss_pred HHHHHHHHcCCCcEEEEecCcc-CCCCCCCccEEEecccccccc-ccHHHHHHHHHh--hcCCCeEEEEEc
Q 013393 80 NQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWL-QRDGILLLELDR--LLRPGGYFVYSS 146 (444)
Q Consensus 80 a~i~~a~e~~~~~~~~~~d~~~-lp~~~~sFDlI~~~~~~l~~~-~d~~~~L~ei~r--vLkPGG~lvis~ 146 (444)
...+.......+..+...|+.. +.....+||+|++.. +|. ......+..+.+ .|+|+|.+++..
T Consensus 82 ~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 82 LIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---PFRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC---SSSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred HHHHHhhccccceeeeeecccccccccccccCEEEEcC---ccccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 4433332223355666666443 334567899999864 222 334566666654 699999999853
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=2.4e-06 Score=76.15 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=66.6
Q ss_pred eEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc----CCCcEEEEecCccCC-----CCCCCccEEE
Q 013393 47 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP-----YPSRSFELAH 113 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~----~~~~~~~~~d~~~lp-----~~~~sFDlI~ 113 (444)
++||++||+|..+..++++ .++|+|.++ .+++.|+++ +.++.+...++..+. +..++||.|+
T Consensus 26 ~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~-----~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl 100 (192)
T d1m6ya2 26 IILDCTVGEGGHSRAILEHCPGCRIIGIDVDS-----EVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 100 (192)
T ss_dssp EEEETTCTTSHHHHHHHHHCTTCEEEEEESCH-----HHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred EEEEecCCCcHHHHHHHhcCCCCeEEEeechH-----HHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceee
Confidence 8999999999999999874 466666555 455555544 456777777665532 4457899998
Q ss_pred ecccccc--------ccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRCRID--------WLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~~l~--------~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.-..+-. ........|..+.++|+|||.+++.+
T Consensus 101 ~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 101 MDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred eccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 6532111 12334578999999999999999864
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.01 E-value=7.9e-06 Score=72.00 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=82.3
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 79 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~ 79 (444)
+.|..+.+|.+... ....+.-.+.+-+++... -...+|||++||+|.++...+.+ .|+.+|.++..+..
T Consensus 8 ~kg~~l~~~~~~~~-RPt~~~vrealFn~l~~~-------~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~ 79 (182)
T d2fhpa1 8 YGGRRLKALDGDNT-RPTTDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKV 79 (182)
T ss_dssp TTTCBCCCCCCCSS-CCCCHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred cCCCEecCCCCCCc-CcCcHHHHHHHHHHHHHh-------cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHH
Confidence 34667777765432 333334444555666421 12348999999999999988875 47777777655443
Q ss_pred HHHHHHHHcCC--CcEEEEecCccC----CCCCCCccEEEeccccccc-cccHHHHHHHHHh--hcCCCeEEEEEcC
Q 013393 80 NQIQFALERGI--PSTLGVLGTKRL----PYPSRSFELAHCSRCRIDW-LQRDGILLLELDR--LLRPGGYFVYSSP 147 (444)
Q Consensus 80 a~i~~a~e~~~--~~~~~~~d~~~l----p~~~~sFDlI~~~~~~l~~-~~d~~~~L~ei~r--vLkPGG~lvis~p 147 (444)
...+. ...+. +..+...|+.+. .-...+||+|++-- +| ..+....+..+.. .|+|+|++++..+
T Consensus 80 ~~~N~-~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 80 IKENI-AITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHHH-HHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHh-hhhhcccccccccccchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 33332 22233 466777775432 12356799999754 23 2445677777754 6999999998543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.94 E-value=1.5e-05 Score=76.30 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=74.3
Q ss_pred CeEEEECCCcchHHHHHhh----C-----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLS----H-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~-----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
.+|||.|||+|.+...+.+ + .++|+|+++..+..+... +...+....+...|.... .+.++||+|+++.
T Consensus 119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~NP 196 (328)
T d2f8la1 119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVG-ADLQRQKMTLLHQDGLAN-LLVDPVDVVISDL 196 (328)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCTTSC-CCCCCEEEEEEEC
T ss_pred CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHH-HHHhhhhhhhhccccccc-cccccccccccCC
Confidence 4899999999999887753 2 366777766554433332 223356666666664433 3457899999974
Q ss_pred ccccccc-----------------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC
Q 013393 117 CRIDWLQ-----------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 171 (444)
Q Consensus 117 ~~l~~~~-----------------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~g 171 (444)
-...... -...++..+.+.|+|||++++..|..+..... ...+++.+.+.+
T Consensus 197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~----~~~lR~~L~~~~ 264 (328)
T d2f8la1 197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNG 264 (328)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHE
T ss_pred CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCch----hHHHHHHHHhCC
Confidence 2111100 11247999999999999999887775433222 334555444443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.93 E-value=6.9e-06 Score=77.20 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCcchHHHHHhhCC---ceEEEcCcccchHHHHHHHHHc---------------CCCcEEEEecCccCCC
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRLPY 104 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~~---V~gvdis~~dis~a~i~~a~e~---------------~~~~~~~~~d~~~lp~ 104 (444)
.++++||-+|+|.|..+..+++.. ++.+++ .+..++.|++. ..++.+...|....--
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEi-----D~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEI-----DEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEES-----CHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecC-----CHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence 445699999999999999988753 444444 45555555532 3456777777544322
Q ss_pred CCCCccEEEecccccccccc----HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 105 PSRSFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 105 ~~~sFDlI~~~~~~l~~~~d----~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
.+++||+|++-. .-+.... -.++++.+.+.|+|||.+++...+++
T Consensus 146 ~~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 146 NNRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp HCCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred ccCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 357899999743 1221111 14799999999999999998765544
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.92 E-value=2.1e-05 Score=70.19 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=65.6
Q ss_pred CeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEEecccccc
Q 013393 46 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 120 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~ 120 (444)
.+|||.|||+|.+...+.+ ..+.|+|+.+.... ......+...+....+ ....||+|+++.-...
T Consensus 21 ~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------~~~~~~~~~~~~~~~~-~~~~fd~ii~npP~~~ 90 (223)
T d2ih2a1 21 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---------LPPWAEGILADFLLWE-PGEAFDLILGNPPYGI 90 (223)
T ss_dssp CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---------CCTTEEEEESCGGGCC-CSSCEEEEEECCCCCC
T ss_pred CEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---------hcccceeeeeehhccc-cccccceecccCcccc
Confidence 4899999999999887765 24788888875431 1223455556654443 3468999998742111
Q ss_pred cc---------------------------c-cHHHHHHHHHhhcCCCeEEEEEcCCCCCCCh
Q 013393 121 WL---------------------------Q-RDGILLLELDRLLRPGGYFVYSSPEAYAHDP 154 (444)
Q Consensus 121 ~~---------------------------~-d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~ 154 (444)
.. . -...++..+.+.|+|||++++..|..+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~ 152 (223)
T d2ih2a1 91 VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE 152 (223)
T ss_dssp BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG
T ss_pred ccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCc
Confidence 00 0 0235778899999999999998877654433
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.87 E-value=1e-05 Score=73.83 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC--CcEE
Q 013393 22 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTL 94 (444)
Q Consensus 22 ~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~--~~~~ 94 (444)
.+++..+.++.. +++||++||++|.-+..+++ ..++++|.++.....+...+ .+.|. .+.+
T Consensus 48 g~~L~~L~~~~~-----------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~-~~~g~~~~i~~ 115 (227)
T d1susa1 48 GQFLSMLLKLIN-----------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI-KKAGVDHKIDF 115 (227)
T ss_dssp HHHHHHHHHHHT-----------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH-HHTTCGGGEEE
T ss_pred HHHHHHHHHhcC-----------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHH-HHhccccceee
Confidence 445555555553 45899999999998888875 36788888876544444333 33343 3566
Q ss_pred EEecCcc-CC------CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 95 GVLGTKR-LP------YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 95 ~~~d~~~-lp------~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
...++.+ ++ ...++||+|+.-. .......++..+.+.|+|||.+++-.
T Consensus 116 ~~g~a~~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 116 REGPALPVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EESCHHHHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred eehHHHHHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 6666432 22 1246899999643 33567789999999999999999853
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=97.87 E-value=5.7e-06 Score=73.50 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=73.5
Q ss_pred EEEecccccchhhhhccCCCceEEEecccc-CCCchhHHhhccccccccccccCCCCCCcccchhhccccccccccCCCC
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCS 369 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~-~~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~ 369 (444)
.|+|+.+|.|.|+..|.. ++-+| +++.+.+.-+|++ -.....++.++..+.+||+|++.+++..+. +
T Consensus 39 ~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~----d 106 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD----D 106 (208)
T ss_dssp CEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS----C
T ss_pred eEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc----c
Confidence 599999999999999965 23344 3577778778874 467778888888889999999999998653 3
Q ss_pred hhhhhhhhcccccCCcEEEEec
Q 013393 370 FEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 370 ~~~~~~e~drilrp~g~~~~rd 391 (444)
...+|-|+-|+|+|||.++|.+
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEe
Confidence 7889999999999999999954
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.74 E-value=3.5e-05 Score=72.88 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cCCCcEEEEecCcc-CCCCCCCccEEE
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAH 113 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~-lp~~~~sFDlI~ 113 (444)
.++++||=||.|.|..+..+++. .|+.+|+++.-+..+..-+... ...++.+...|... +.-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 44679999999999999999874 4667777765443333222221 13567888888544 223357899999
Q ss_pred ecccccccc-c----cHHHHHHHHHhhcCCCeEEEEEcCCCCC
Q 013393 114 CSRCRIDWL-Q----RDGILLLELDRLLRPGGYFVYSSPEAYA 151 (444)
Q Consensus 114 ~~~~~l~~~-~----d~~~~L~ei~rvLkPGG~lvis~p~~~~ 151 (444)
+-. .-+.. + .-.++++.+.+.|+|||.++....+++.
T Consensus 168 ~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~ 209 (295)
T d1inla_ 168 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY 209 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred EcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhh
Confidence 743 11111 1 1248999999999999999998776543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.72 E-value=2.3e-05 Score=74.81 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH-----cCCCcEEEEecCccC-CCCCCCccEE
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL-PYPSRSFELA 112 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e-----~~~~~~~~~~d~~~l-p~~~~sFDlI 112 (444)
..+++||.||.|.|..+..+++. .|+.+++++.-+..+...+... ...++.+...|.... .-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 34669999999999999998764 4566666654443332222111 134677888885442 2235689999
Q ss_pred Eeccccccccc-------cHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 013393 113 HCSRCRIDWLQ-------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 170 (444)
Q Consensus 113 ~~~~~~l~~~~-------d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~ 170 (444)
++-.. -++.. .-.++++.+.+.|+|||.+++.....+.... +....+.+.+++.
T Consensus 156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~---~~~~~i~~tl~~~ 216 (312)
T d1uira_ 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHH---RVHPVVHRTVREA 216 (312)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC------CHHHHHHHHHHTT
T ss_pred EEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchH---HHHHHHHHHHHHh
Confidence 96431 11111 1147999999999999999986544332221 2234455555554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.63 E-value=0.00014 Score=68.45 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=70.8
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cCCCcEEEEecCcc-C-CCCCCCccEE
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-L-PYPSRSFELA 112 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~-l-p~~~~sFDlI 112 (444)
.++++||=||-|.|..+..+++. .++.+|+++.-+..+..-+... ...++.+...|... + ..++++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 44679999999999999999874 3566666654433222211111 14567777777443 2 2345689999
Q ss_pred Eeccccccccc----cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 113 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 113 ~~~~~~l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+.-.. -.... --..+++.+.+.|+|||.++....+++
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 199 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 199 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence 97431 11111 124799999999999999999877654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.56 E-value=7.4e-05 Score=69.85 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=70.4
Q ss_pred CCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHH----cCCCcEEEEecCcc-CCCCCCCccEEEe
Q 013393 44 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHC 114 (444)
Q Consensus 44 ~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e----~~~~~~~~~~d~~~-lp~~~~sFDlI~~ 114 (444)
++++||-||-|.|..+..+++. .++.+|+++.-+..+..-+... ...++.+...|... +.-.+++||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 4569999999999999999874 4566666664443332222211 13467777777544 2234578999997
Q ss_pred cccccccc----ccHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 115 SRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 115 ~~~~l~~~----~d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
-. .-+.. ---.++++.+.+.|+|||.++....+++
T Consensus 155 D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~ 193 (274)
T d1iy9a_ 155 DS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW 193 (274)
T ss_dssp SC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred cC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcc
Confidence 53 11111 1134899999999999999999876654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=7.7e-05 Score=70.13 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCcc-CCCCCCC
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRS 108 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~-lp~~~~s 108 (444)
..+++||=+|-|.|..+..+++. .++.+|+.+. .++.|++. ..++.+...|... +.-..++
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~-----Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~ 151 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDED-----VIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDA 151 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH-----HHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSC
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHH-----HHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCC
Confidence 34569999999999999999874 4455666554 44444332 4567888888544 2223578
Q ss_pred ccEEEeccccccccc----cHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 109 FELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 109 FDlI~~~~~~l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
||+|++-. .-.... .-.++++.+.+.|+|||.+++....++
T Consensus 152 yDvIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 196 (285)
T d2o07a1 152 FDVIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW 196 (285)
T ss_dssp EEEEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCEEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence 99999753 111111 112789999999999999999776544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=0.0002 Score=62.56 Aligned_cols=88 Identities=19% Similarity=0.224 Sum_probs=59.2
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------CCCCCccEEE
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAH 113 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~~~~sFDlI~ 113 (444)
+|||+||+.|+|+.++.+ ..++++|+.+... -....+...|..... ...+.||+|+
T Consensus 25 ~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~-----------i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVl 93 (180)
T d1ej0a_ 25 TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----------IVGVDFLQGDFRDELVMKALLERVGDSKVQVVM 93 (180)
T ss_dssp EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----------CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeccCCcceEEEEeeccccceEEEeecccccc-----------cCCceEeecccccchhhhhhhhhccCcceeEEE
Confidence 899999999999999886 2588898877531 234455555543311 2346799999
Q ss_pred ecccccccc----ccH-------HHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRCRIDWL----QRD-------GILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~~l~~~----~d~-------~~~L~ei~rvLkPGG~lvis~ 146 (444)
|-.+ .... .|. ...+.-+.++||+||.|++-.
T Consensus 94 SD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 94 SDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp ECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 8642 2221 111 145666788999999999854
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.50 E-value=5.9e-05 Score=71.88 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=75.9
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEe----cc
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC----SR 116 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~----~~ 116 (444)
+|||+.||.|.=+.++++ ..+++.|+++.-+..... ..+..+. ++.+...|...++.....||.|++ +.
T Consensus 119 ~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~-~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg 197 (313)
T d1ixka_ 119 IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL-NLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTG 197 (313)
T ss_dssp EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTS
T ss_pred eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHH-HHHHHHhhccccccccccccccccccccEEEEcccccc
Confidence 899999999986666654 246777776544333222 2222343 445555565556655678999997 21
Q ss_pred c-cccccc---------c-------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 117 C-RIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 117 ~-~l~~~~---------d-------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
. ++...+ + ..++|.++.+.|||||+++.++=+...... -..+..++++.+++.+..
T Consensus 198 ~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eEN-----E~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 198 SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEEN-----EFVIQWALDNFDVELLPL 270 (313)
T ss_dssp TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGT-----HHHHHHHHHHSSEEEECC
T ss_pred CCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhH-----HHHHHHHHhcCCCEEeec
Confidence 0 111111 1 126889999999999999998766442222 234566777777766543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.46 E-value=6.6e-05 Score=71.35 Aligned_cols=103 Identities=14% Similarity=0.050 Sum_probs=67.4
Q ss_pred CCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHc---------CCCcEEEEecCccC-CCCCCC
Q 013393 43 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRS 108 (444)
Q Consensus 43 ~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~---------~~~~~~~~~d~~~l-p~~~~s 108 (444)
.++++||-||-|.|..+..+++. .|+.++++ +..++.+++. ..++.+...|.... .-..++
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID-----~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~ 179 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEID-----EMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNE 179 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSC-----HHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTC
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEccc-----HHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCC
Confidence 45669999999999999999884 34555444 4555555543 24566777774432 223578
Q ss_pred ccEEEeccccccccc----cHHHHHHHHHhhcCCCeEEEEEcCCCCC
Q 013393 109 FELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYA 151 (444)
Q Consensus 109 FDlI~~~~~~l~~~~----d~~~~L~ei~rvLkPGG~lvis~p~~~~ 151 (444)
||+|++-.. -.... .-..+++.+.+.|+|||.++....+++.
T Consensus 180 yDvII~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~ 225 (312)
T d2b2ca1 180 FDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWL 225 (312)
T ss_dssp EEEEEECCC--------------HHHHHHHHEEEEEEEEEECCCTTT
T ss_pred CCEEEEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHH
Confidence 999997531 11111 1137899999999999999998766543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.0011 Score=63.51 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=77.0
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHcC-CCcEEEEecCcc-CC---CCCCCccEEEecccc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR-LP---YPSRSFELAHCSRCR 118 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~~d~~~-lp---~~~~sFDlI~~~~~~ 118 (444)
.+|||+-||+|.++..|+++ .|+|+|.++..+..+.. .++.++ .++.+...+.++ ++ ....+||+|+..--.
T Consensus 214 ~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~-na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR 292 (358)
T d1uwva2 214 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 292 (358)
T ss_dssp CEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT
T ss_pred ceEEEecccccccchhccccccEEEeccCcHHHHHHHHH-hHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCC
Confidence 48999999999999999984 79999999877766554 344444 467787777554 22 234679999875311
Q ss_pred ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEeeec
Q 013393 119 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 179 (444)
Q Consensus 119 l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~~~ 179 (444)
- ...+.+.++.+ ++|.-.+++|..+ ...-+.+..+. +.||++.....
T Consensus 293 ~----G~~~~~~~l~~-~~~~~ivYVSCnp--------~TlaRDl~~l~-~~gy~l~~i~~ 339 (358)
T d1uwva2 293 A----GAAGVMQQIIK-LEPIRIVYVSCNP--------ATLARDSEALL-KAGYTIARLAM 339 (358)
T ss_dssp T----CCHHHHHHHHH-HCCSEEEEEESCH--------HHHHHHHHHHH-HTTCEEEEEEE
T ss_pred c----cHHHHHHHHHH-cCCCEEEEEeCCH--------HHHHHHHHHHH-HCCCeEeEEEE
Confidence 1 11245666665 4788788887543 11223444443 56897766543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.37 E-value=0.00064 Score=61.91 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=73.8
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHH-HHHHcCC-CcEEEEecCccCCC---CCCCccEEEecc
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQ-FALERGI-PSTLGVLGTKRLPY---PSRSFELAHCSR 116 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~-~a~e~~~-~~~~~~~d~~~lp~---~~~sFDlI~~~~ 116 (444)
.+++|||+|.|.-|..++= ..++-+|-+..-+ +.++ ..++-+. ++.+....++.+.. ..++||+|+|..
T Consensus 72 ~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~--~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI--TFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH--HHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CeEEeecCCCchHHHHHHHhCCCccceeecchHHHH--HHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 4899999999976666643 3455554443211 1112 2333355 44555555555432 136799999875
Q ss_pred ccccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 117 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 117 ~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
......++.-+...+++||.+++.--.. ......+....++..|++....
T Consensus 150 -----va~l~~ll~~~~~~l~~~g~~i~~KG~~------~~~El~~a~~~~~~~~~~~~~v 199 (239)
T d1xdza_ 150 -----VARLSVLSELCLPLVKKNGLFVALKAAS------AEEELNAGKKAITTLGGELENI 199 (239)
T ss_dssp -----CSCHHHHHHHHGGGEEEEEEEEEEECC-------CHHHHHHHHHHHHHTTEEEEEE
T ss_pred -----hhCHHHHHHHHhhhcccCCEEEEECCCC------hHHHHHHHHHHHHHcCCEEEEE
Confidence 2567889999999999999999843221 2233445566677888876543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.34 E-value=0.0004 Score=63.22 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=46.6
Q ss_pred CeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc---CCCcEEEEecCccCCCCCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
.+|||||||+|.++..|++. .++++++++. .++..+++ ..++.+..+|+..++++......|+++
T Consensus 23 d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~-----l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~N 92 (235)
T d1qama_ 23 DNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK-----LCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGN 92 (235)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEECSCHH-----HHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEE
T ss_pred CeEEEECCCchHHHHHHHhCcCceEEEeeccc-----hHHHHHHHhhcccchhhhhhhhhhccccccccceeeee
Confidence 38999999999999999984 5777766653 33444443 456788899988888765544456544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.00032 Score=62.66 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=63.0
Q ss_pred eEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCCCCCccEEEeccccccc
Q 013393 47 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 121 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~ 121 (444)
++||+|||.|.-|..++- ..++.+|-...-+. ...+.+++-+. ++.+.....+.+. +..+||+|+|..
T Consensus 68 ~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA----- 140 (207)
T d1jsxa_ 68 RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVR-FLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA----- 140 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-----
T ss_pred ceeeeeccCCceeeehhhhcccceEEEEecchHHHH-HHHHHHHHcCCcceeeeccchhhhc-cccccceehhhh-----
Confidence 799999999977766653 35666655543221 11123334455 5667666677664 346899998765
Q ss_pred cccHHHHHHHHHhhcCCCeEEEEE
Q 013393 122 LQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 122 ~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
..+...++.-+...+++||.+++.
T Consensus 141 ~~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 141 FASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred hcCHHHHHHHHHHhcCCCcEEEEE
Confidence 255678999999999999999985
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.32 E-value=4e-05 Score=70.58 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=59.8
Q ss_pred CccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc---
Q 013393 14 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--- 88 (444)
Q Consensus 14 gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~--- 88 (444)
|++|-.. ...++.+.+.+.. .++ .+|||||||+|.++..|++. .++++|+++..+.. ++++
T Consensus 8 GQnFL~d-~~ii~kIv~~~~~-----~~~---d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~-----l~~~~~~ 73 (245)
T d1yuba_ 8 SQNFLTS-EKVLNQIIKQLNL-----KET---DTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNL-----SSEKLKL 73 (245)
T ss_dssp CCCBCCC-TTTHHHHHHHCCC-----CSS---EEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSS-----SSCTTTT
T ss_pred CCcccCC-HHHHHHHHHhcCC-----CCC---CeEEEECCCccHHHHHHHhhcCceeEeeecccchhh-----hhhhhhh
Confidence 5555444 2334555555543 222 38999999999999999873 67888887765432 2222
Q ss_pred CCCcEEEEecCccCCCCCCCccEEEecc
Q 013393 89 GIPSTLGVLGTKRLPYPSRSFELAHCSR 116 (444)
Q Consensus 89 ~~~~~~~~~d~~~lp~~~~sFDlI~~~~ 116 (444)
..++.+..+|+..++++...++.|+++.
T Consensus 74 ~~n~~ii~~D~l~~~~~~~~~~~vv~NL 101 (245)
T d1yuba_ 74 NTRVTLIHQDILQFQFPNKQRYKIVGNI 101 (245)
T ss_dssp CSEEEECCSCCTTTTCCCSSEEEEEEEC
T ss_pred ccchhhhhhhhhccccccceeeeEeeee
Confidence 2457788888888888877777777654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.28 E-value=0.00062 Score=62.05 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=58.6
Q ss_pred CCCCCCCCeEEEECCCcchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCc-EEEEe-cCccCCCCCCCccEE
Q 013393 39 LNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPS-TLGVL-GTKRLPYPSRSFELA 112 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGtG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~-~~~~~-d~~~lp~~~~sFDlI 112 (444)
+++++ +|+|+|||.|.|+.+++.. .+.|.++- .+.++.-+ .....+-++ .+... +... .+++..|.|
T Consensus 64 ~~~~~---~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG-~d~~e~P~-~~~~~~~ni~~~~~~~dv~~--l~~~~~D~v 136 (257)
T d2p41a1 64 VTPEG---KVVDLGCGRGGWSYYCGGLKNVREVKGLTKG-GPGHEEPI-PMSTYGWNLVRLQSGVDVFF--IPPERCDTL 136 (257)
T ss_dssp SCCCE---EEEEETCTTSHHHHHHHTSTTEEEEEEECCC-STTSCCCC-CCCSTTGGGEEEECSCCTTT--SCCCCCSEE
T ss_pred ccCCC---eEEEecCCCChHHHHHHhhcCCCceeEEEec-CccccCCc-cccccccccccchhhhhHHh--cCCCcCCEE
Confidence 34555 8999999999999999875 34455542 22211100 000001111 12111 1222 346789999
Q ss_pred EeccccccccccHH-------HHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 113 HCSRCRIDWLQRDG-------ILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 113 ~~~~~~l~~~~d~~-------~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
+|-.+ -. ..+.. +++.-+.+.|+|||-|++-.-.+|
T Consensus 137 lcDm~-es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 137 LCDIG-ES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp EECCC-CC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred EeeCC-CC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 99752 22 22221 567777789999999998665543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00023 Score=66.74 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=74.9
Q ss_pred CeEEEECCCcchHHHHHhh----CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--CCCCCccEEEe----c
Q 013393 46 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC----S 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~----~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--~~~~sFDlI~~----~ 115 (444)
.+|||+.+|.|.=+.++++ ..+++.|+++.-+.... +..+..+.+......+....+ ...+.||.|++ +
T Consensus 104 ~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCS 182 (284)
T d1sqga2 104 EHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCS 182 (284)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCC
T ss_pred ceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEEecccc
Confidence 3899999999987766665 24788888886654333 344455666555444432221 23468999997 2
Q ss_pred c-cccccccc----------------HHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHh-cCeEE
Q 013393 116 R-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKI 174 (444)
Q Consensus 116 ~-~~l~~~~d----------------~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~-~gf~~ 174 (444)
. .++...++ ..++|.++.+.|||||+++.++=+.... +. -..++.++++ .+|++
T Consensus 183 g~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~--EN---E~vv~~~l~~~~~~~~ 254 (284)
T d1sqga2 183 ATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE--EN---SLQIKAFLQRTADAEL 254 (284)
T ss_dssp CGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHCTTCEE
T ss_pred ccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh--hC---HHHHHHHHHhCCCcEE
Confidence 1 11111111 1268999999999999999987664322 22 2245555554 34544
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.15 E-value=0.00044 Score=60.33 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=71.0
Q ss_pred ccCCeeecCCCCccccccHHHHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC---CceEEEcCcccchH
Q 013393 3 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 79 (444)
Q Consensus 3 ~~g~~~~fpg~gt~f~~g~~~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~---~V~gvdis~~dis~ 79 (444)
+.|..+..|.+.. .....+.-.+.+-+++.. .+ .+ .+|||+-||||+++...+.+ .|+.+|.+...+..
T Consensus 10 ~kg~~l~~~~~~~-~RPt~~~vrealFn~l~~---~~-~~---~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ 81 (183)
T d2ifta1 10 WRGRKLPVLNSEG-LRPTGDRVKETLFNWLMP---YI-HQ---SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQ 81 (183)
T ss_dssp TTTCEEECC----------CHHHHHHHHHHHH---HH-TT---CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred cCCCEecCCCCCC-cCcCcHHHHHHHHHHhhh---hc-cc---ceEeecccCccceeeeeeeecceeeEEeecccchhhh
Confidence 3567777776532 222223333334444432 11 12 28999999999999999986 45666655543322
Q ss_pred HHHHHHHHcCC---CcEEEEecCc---cCCCCCCCccEEEecccccccc-ccHHHHHHHHHh--hcCCCeEEEEEcC
Q 013393 80 NQIQFALERGI---PSTLGVLGTK---RLPYPSRSFELAHCSRCRIDWL-QRDGILLLELDR--LLRPGGYFVYSSP 147 (444)
Q Consensus 80 a~i~~a~e~~~---~~~~~~~d~~---~lp~~~~sFDlI~~~~~~l~~~-~d~~~~L~ei~r--vLkPGG~lvis~p 147 (444)
.. +..+..+. ...+...|.. .......+||+|++-- +|. ......+..+.. .|+++|.+++..+
T Consensus 82 ik-~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 82 LK-KNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP---PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HH-HHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred Hh-hHHhhhcccccccccccccccccccccccCCcccEEEech---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 22 22222222 2344444422 2233355799999753 232 234566776654 7999999998543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=96.99 E-value=0.0003 Score=65.25 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=66.8
Q ss_pred eeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHH----hhccc---cccccccccCCCCCCcccchhhcccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL---IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~----~~rg~---~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
=-.|+|+.+|.|+++..|.+. .. +|+-++- +..+... -..|| +-+.+.=.+.++.=+.+||+|.+..+
T Consensus 68 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 68 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence 358999999999999998754 32 3444442 3334332 33455 33333333445555699999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
|-++. +...++-|+-|+|||||.+++.|
T Consensus 145 l~h~~----d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 145 FLHSP----DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc----CHHHHHHHHHHhcCCCcEEEEEE
Confidence 87543 46889999999999999999953
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=96.94 E-value=0.00046 Score=61.43 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=68.9
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhH----Hhhccc--cccccccccCCCCCCcccchhhc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGL--IGTVHDWCESFSTYPRTYDLLHA 356 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~--~~~~~~~~~~~~~y~~~~dl~h~ 356 (444)
|+.+. .|+|+.+|.|.|+.+|.+.-. +|+=+|- ++-+.. +.+.|+ |-.++.=++.++.-+.+||++++
T Consensus 13 l~~~~--rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~ 87 (231)
T d1vl5a_ 13 LKGNE--EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTC 87 (231)
T ss_dssp CCSCC--EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEE
T ss_pred CCCcC--EEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccc
Confidence 44443 699999999999999876533 3433332 233332 233454 34555556766655689999999
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
..++..+ -+...+|-|+-|+|+|||+++|-|
T Consensus 88 ~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 88 RIAAHHF----PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp ESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccc----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9988744 258899999999999999999864
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.90 E-value=0.002 Score=63.43 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh-----------------CCceEEEcCcccchHHHHHHH
Q 013393 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFA 85 (444)
Q Consensus 23 ~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~-----------------~~V~gvdis~~dis~a~i~~a 85 (444)
...+.+.+++.. ....+|||-.||+|.|...+.+ ..+.|.|+.+....-+..+..
T Consensus 149 ~Iv~~mv~ll~~--------~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 149 PLIQAMVDCINP--------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred hhhHhhheeccC--------cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 345556666542 1234799999999999876644 247788888776655554444
Q ss_pred HHcC--CCcEEEEecCccCCCCCCCccEEEeccccccc-----------------cccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 86 LERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW-----------------LQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 86 ~e~~--~~~~~~~~d~~~lp~~~~sFDlI~~~~~~l~~-----------------~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.... ....+...|.... .+...||+|+++.= ... ....-.++..+.+.|+|||++++..
T Consensus 221 l~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEK-EPSTLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp HTTCCSSCCSEEECCTTTS-CCSSCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCccccceeecCchhhh-hcccccceEEecCC-CCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3221 1233445554332 34578999999741 110 0012368999999999999999987
Q ss_pred CC
Q 013393 147 PE 148 (444)
Q Consensus 147 p~ 148 (444)
|.
T Consensus 299 p~ 300 (425)
T d2okca1 299 PD 300 (425)
T ss_dssp EH
T ss_pred ch
Confidence 75
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.89 E-value=0.00095 Score=60.51 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=57.8
Q ss_pred CeEEEECCCcchHHHHHhh--------CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC----CCCCCccEEE
Q 013393 46 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAH 113 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--------~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp----~~~~sFDlI~ 113 (444)
++||++|++.|.-+..+++ ..++++|+.+.... .+.....++.+..+|..... +....||+|+
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIf 156 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLIF 156 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEEE
Confidence 4899999999965554432 46899998764321 11223456778777754322 2345689887
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
.-. -|. .+....--+....|+|||++++.+.
T Consensus 157 ID~--~H~-~~~v~~~~~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 157 IDN--AHA-NTFNIMKWAVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EES--SCS-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EcC--Ccc-hHHHHHHHHHhcccCcCCEEEEEcC
Confidence 543 232 2222221246789999999999543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.87 E-value=0.00027 Score=66.10 Aligned_cols=103 Identities=9% Similarity=0.200 Sum_probs=75.6
Q ss_pred cCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchh----HHhhccccccccccccCCCCCCcccchhhcccc
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK----IIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~----~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
+-..=..|+|+..|+||+|..+.+. ++-|.-|... ++.+. .+.+.||-+..+.-+.-+...|.+||.|-+.++
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls--~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~ 126 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLS--KNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEA 126 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESC
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecch--HHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhH
Confidence 3334457999999999999877644 5544433332 34444 466678877666666666777899999999999
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
|-++..+ +...++-++.|+|+|||.++|.+
T Consensus 127 ~eh~~~~--~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 127 FEHFGHE--NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGGTCGG--GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHhhhh--hHHHHHHHHHhccCCCceEEEEE
Confidence 9865422 47889999999999999998864
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0011 Score=59.91 Aligned_cols=108 Identities=11% Similarity=0.115 Sum_probs=72.8
Q ss_pred HHHHHHHHhhhhccCCceeEEEecccccchhhhhccC-CCceEEEeccccCCCchhH----Hhhccccc----ccccccc
Q 013393 272 RVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARLKI----IYDRGLIG----TVHDWCE 342 (444)
Q Consensus 272 ~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~~~l~~----~~~rg~~~----~~~~~~~ 342 (444)
.++.....++ ++.+ ..|+|+.+|.|+++..|.. .+..|.-|=|. +..+.. .-+.|+=. ..-|+-+
T Consensus 21 ~~~~l~~~~~--l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~~~~~d~~~ 94 (245)
T d1nkva_ 21 KYATLGRVLR--MKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMS--SLFTAQAKRRAEELGVSERVHFIHNDAAG 94 (245)
T ss_dssp HHHHHHHHTC--CCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred HHHHHHHHcC--CCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEecc--cchhhHHHHHHHHhhccccchhhhhHHhh
Confidence 3444444454 5544 3699999999999998865 46777555332 233332 23335421 3335544
Q ss_pred CCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 343 SFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 343 ~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
-+ .+.+||++++.+.+.... +...+|-||-|+|||||.++|.+
T Consensus 95 ~~--~~~~fD~v~~~~~~~~~~----d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 95 YV--ANEKCDVAACVGATWIAG----GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp CC--CSSCEEEEEEESCGGGTS----SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred cc--ccCceeEEEEEehhhccC----CHHHHHHHHHHHcCcCcEEEEEe
Confidence 33 468999999999888443 47889999999999999999964
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.63 E-value=0.0047 Score=53.60 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=76.0
Q ss_pred eEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCC-----CCCCCccEEEecccc
Q 013393 47 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP-----YPSRSFELAHCSRCR 118 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp-----~~~~sFDlI~~~~~~ 118 (444)
.++|..||.|..+..++++ .|+|+|..+. ++..+++. ..+..+.......+. +..+.+|.|+.-..+
T Consensus 21 ~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~-----ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGv 95 (182)
T d1wg8a2 21 VYVDATLGGAGHARGILERGGRVIGLDQDPE-----AVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGV 95 (182)
T ss_dssp EEEETTCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred EEEEeCCCCcHHHHHHhcccCcEEEEhhhhh-----HHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccC
Confidence 8999999999999999885 5777776654 44555544 334566655544432 334679999975422
Q ss_pred ccc-c-------ccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCeEEEee
Q 013393 119 IDW-L-------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 177 (444)
Q Consensus 119 l~~-~-------~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~gf~~v~~ 177 (444)
-.+ + ......|.....+|+|||.+++.+... .+ -..+...+++.+++.+..
T Consensus 96 Ss~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs----~E----d~ivk~~~~e~~~k~i~k 154 (182)
T d1wg8a2 96 SSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS----LE----DRVVKRFLRESGLKVLTK 154 (182)
T ss_dssp CHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH----HH----HHHHHHHHHHHCSEESCS
T ss_pred CHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc----ch----hHHHHHHHhhccceeccC
Confidence 111 1 122357888899999999999865331 11 134566777777766544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.00066 Score=60.90 Aligned_cols=94 Identities=16% Similarity=0.276 Sum_probs=68.6
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccCC-CchhH----Hhhccc--cccccccccCCCCCCcccchhhcccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~----~~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
-|+|+.+|.|.++..|.+.- -+|+=+|-. +-|.+ +-++|+ +-.++.=.|.++.=..+||+|.+.+.|...
T Consensus 19 rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 95 (234)
T d1xxla_ 19 RVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF 95 (234)
T ss_dssp EEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGC
T ss_pred EEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeecc
Confidence 39999999999999998752 366666633 44443 334454 444554456666446899999999988743
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.+...+|=|+-|+|+|||.+++.|
T Consensus 96 ----~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 96 ----SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 248999999999999999998853
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=96.49 E-value=0.00086 Score=61.41 Aligned_cols=123 Identities=13% Similarity=0.131 Sum_probs=78.6
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHh----hccccccccccccCCCCCCcccchhhccc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWK 358 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~----~rg~~~~~~~~~~~~~~y~~~~dl~h~~~ 358 (444)
+....-.+++|+.+|.|.++..|..+-. -+|.-++.. .-|...- .+..+=.++.=-+.|+.=+.+||+|.+..
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~ 166 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW 166 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeec
Confidence 4445566899999999999988753211 133333432 3333322 22333334333445554468999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEeccHH----------------HHHHHHHHHhhcccee
Q 013393 359 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 410 (444)
Q Consensus 359 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~----------------~~~~~~~~~~~~~w~~ 410 (444)
+|-++... ++..+|-++-|.|+|||.++|.|... ..++++++++.-.+++
T Consensus 167 vl~hl~d~--d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~i 232 (254)
T d1xtpa_ 167 TAIYLTDA--DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp CGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred cccccchh--hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEE
Confidence 99865422 36788999999999999999976422 1345666666555655
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=96.41 E-value=0.0015 Score=58.25 Aligned_cols=92 Identities=23% Similarity=0.313 Sum_probs=62.9
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccc--cccccccccCCCCCCcccchhhccccccccccCC
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 367 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~--~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~~~ 367 (444)
+|+|+.++-|.|+..|.+.- ..|+=++- ++-+...-.|.- +-..+.=-+.++. |.+||+|-+.++|.++.
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~--- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID--- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS---
T ss_pred cEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecC---
Confidence 59999999999999997652 13444443 244444433311 2222222334443 79999999999998654
Q ss_pred CChhhhhhhh-cccccCCcEEEEe
Q 013393 368 CSFEDLLIEM-DRMLRPEGFVIIR 390 (444)
Q Consensus 368 c~~~~~~~e~-drilrp~g~~~~r 390 (444)
+...+|.|+ +|+|+|||.++|-
T Consensus 96 -d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 96 -DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCceEEEE
Confidence 367888898 6999999999984
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0027 Score=57.07 Aligned_cols=120 Identities=9% Similarity=0.062 Sum_probs=74.5
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc------------------ccccccccc---------
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR------------------GLIGTVHDW--------- 340 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r------------------g~~~~~~~~--------- 340 (444)
=.-++|+.+|-|.++.-+...... +|+=+|- ++.+...-++ ++-|.+..+
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 446999999999998766654433 4555552 3444433211 111222111
Q ss_pred ----------ccC---CCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccHH-------------
Q 013393 341 ----------CES---FSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------------- 394 (444)
Q Consensus 341 ----------~~~---~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~------------- 394 (444)
++. .+.-+.+||+|-+..++..+...+=++..++-+|-|.|||||.+|+.+-..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 111 133357899999988887443222245678899999999999999965211
Q ss_pred ---HHHHHHHHHhhcccee
Q 013393 395 ---IINYIRKFITALKWDG 410 (444)
Q Consensus 395 ---~~~~~~~~~~~~~w~~ 410 (444)
..+.++++++.-.+++
T Consensus 210 ~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEE
T ss_pred cCCCHHHHHHHHHHCCCEE
Confidence 3677888888877765
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0013 Score=58.41 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=77.8
Q ss_pred CceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhc----cc--cccccccccCCCCCCcccchhhcccc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWKV 359 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~r----g~--~~~~~~~~~~~~~y~~~~dl~h~~~~ 359 (444)
..-..|+|+.+|.|.++..|..+-.. +|+=++- ++-|...-++ |. +-.++.=.+.++.-+.+||+|.+.++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 34457999999999999887543222 3444443 3444443222 32 11222223445655799999999999
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEeccHH---------------HHHHHHHHHhhcccee
Q 013393 360 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS---------------IINYIRKFITALKWDG 410 (444)
Q Consensus 360 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~~---------------~~~~~~~~~~~~~w~~ 410 (444)
+.++... ++..+|-++=|+|+|||.++|.|... ..++++++++.--+++
T Consensus 137 l~h~~~~--~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~i 200 (222)
T d2ex4a1 137 IGHLTDQ--HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSL 200 (222)
T ss_dssp GGGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred cccchhh--hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEE
Confidence 9855321 25678999999999999999853211 2567778887777765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.25 E-value=0.0019 Score=58.04 Aligned_cols=117 Identities=14% Similarity=0.205 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHH----hhccccccccc-c
Q 013393 267 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLIGTVHD-W 340 (444)
Q Consensus 267 ~~w~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~----~~rg~~~~~~~-~ 340 (444)
..+...+..+...+ +.........|+|+.+|-|.++..|.+.. .+|+=++-. +-|... -++|+-..++. =
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d 96 (251)
T d1wzna1 21 ERVKAEIDFVEEIF-KEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGD 96 (251)
T ss_dssp HTHHHHHHHHHHHH-HHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESC
T ss_pred hhHHHHHHHHHHHH-HHhcCCCCCEEEEeCCCCCccchhhcccc---eEEEEEeeccccccccccccccccccchheehh
Confidence 33444454443333 34555566789999999999999987654 266666643 445443 34455332332 1
Q ss_pred ccCCCCCCcccchhhcc-ccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 341 CESFSTYPRTYDLLHAW-KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 341 ~~~~~~y~~~~dl~h~~-~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
-+.++ +|.+||+|.+. +.|..+. ..+....|-++-|+|+|||.++|.
T Consensus 97 ~~~l~-~~~~fD~I~~~~~~~~~~~--~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 97 VLEIA-FKNEFDAVTMFFSTIMYFD--EEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GGGCC-CCSCEEEEEECSSGGGGSC--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcc-cccccchHhhhhhhhhcCC--hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 34454 68999999875 5666432 235778999999999999999984
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.01 Score=55.20 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=60.5
Q ss_pred eEEEECCCcchHHHHHhh-----CCceEEEcCcccchHHHHHHHHHcCC-CcEEEEecCccCCCC---CCCccEEEec--
Q 013393 47 NVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCS-- 115 (444)
Q Consensus 47 rVLDVGCGtG~~a~~La~-----~~V~gvdis~~dis~a~i~~a~e~~~-~~~~~~~d~~~lp~~---~~sFDlI~~~-- 115 (444)
+|||+.||.|.-+.++++ ..+++.|+++.-+.... +..+..+. ++.+...|...++.. .+.||.|++-
T Consensus 97 ~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~-~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 97 HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPS 175 (293)
T ss_dssp EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred eEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH-HHHHhcCccceeeeehhhhhhcccccccceeeEEeecCc
Confidence 899999999987777765 24778888765443322 33334454 456666666555422 2579999972
Q ss_pred --cc-ccc------cc--cc----------HHHHHHHHHhhcCCCeEEEEEcCCCC
Q 013393 116 --RC-RID------WL--QR----------DGILLLELDRLLRPGGYFVYSSPEAY 150 (444)
Q Consensus 116 --~~-~l~------~~--~d----------~~~~L~ei~rvLkPGG~lvis~p~~~ 150 (444)
.. ++. |. .+ ...++..+. .|+|||.++.++-+..
T Consensus 176 CSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 176 CSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp CCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred ccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 10 000 00 00 013444555 4799999999876643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.14 E-value=0.0036 Score=55.54 Aligned_cols=94 Identities=21% Similarity=0.394 Sum_probs=67.8
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhccccccccccccCCCCCCcccchhhcc-ccccccccCCC
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW-KVFSEIEERGC 368 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~-~~~~~~~~~~c 368 (444)
.|+|+.+|-|.++-.|.+.. + .|+=+|- +.-+..+-++|.--....=.+.++.-+.+||+|-+. +++..+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~-~--~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~---- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERG-F--EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE---- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTT-C--EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS----
T ss_pred EEEEECCCCchhcccccccc-e--EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh----
Confidence 48999999999999998763 3 4555553 467777888876432222235566556999998875 4665332
Q ss_pred ChhhhhhhhcccccCCcEEEEec
Q 013393 369 SFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 369 ~~~~~~~e~drilrp~g~~~~rd 391 (444)
+...+|-|+-|+|+|||.+++..
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEE
Confidence 36678889999999999999854
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.14 E-value=0.0012 Score=61.63 Aligned_cols=110 Identities=10% Similarity=0.192 Sum_probs=73.5
Q ss_pred HHHHHHhhhhccCCceeEEEecccccchhhhhcc-CCCceEEEeccccCCCchh----HHhhccccccccccccCCCCCC
Q 013393 274 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMSARLK----IIYDRGLIGTVHDWCESFSTYP 348 (444)
Q Consensus 274 ~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~-~~~~wv~~~~~~~~~~~l~----~~~~rg~~~~~~~~~~~~~~y~ 348 (444)
+.....++ |+.+ .-|+|+.+|+||+|-.+. ..++=|.-+.... .++. -+.+.|+.+-..--+.-+...|
T Consensus 52 ~~~~~~l~--l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~--~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 125 (285)
T d1kpga_ 52 DLALGKLG--LQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK--NQANHVQQLVANSENLRSKRVLLAGWEQFD 125 (285)
T ss_dssp HHHHTTTT--CCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTCCCCSCEEEEESCGGGCC
T ss_pred HHHHHHcC--CCCC--CEEEEecCcchHHHHHHHhcCCcceEEEeccH--HHHHHHHHHHHhhhhhhhhHHHHhhhhccc
Confidence 34445554 5555 459999999999987653 3455554443332 2333 4677888765554444455557
Q ss_pred cccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 349 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 349 ~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
-+||-|=+-+.|-+... =+...++-++.|+|+|||.+++.+
T Consensus 126 ~~fD~i~si~~~eh~~~--~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGH--ERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CCCSEEEEESCGGGTCT--TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccceeeehhhhhcCc--hhHHHHHHHHHhhcCCCCcEEEEE
Confidence 78998888887765432 236788999999999999998844
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0061 Score=61.45 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=68.2
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhh----------------------CCceEEEcCcccchHH
Q 013393 23 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----------------------HDIIAMSLAPNDVHEN 80 (444)
Q Consensus 23 ~y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~----------------------~~V~gvdis~~dis~a 80 (444)
...+.+.+++.. ....+|+|-.||+|.|.....+ ..+.|.|+.+....-+
T Consensus 151 ~Iv~~mv~ll~~--------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 151 PLIKTIIHLLKP--------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred chhHhhhhcccC--------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 345566666642 1223799999999998765543 1457888877655444
Q ss_pred HHHHHHHcCCCc------EEEEecCccCC-CCCCCccEEEeccccc-cc-----------ccc-HHHHHHHHHhhcCCCe
Q 013393 81 QIQFALERGIPS------TLGVLGTKRLP-YPSRSFELAHCSRCRI-DW-----------LQR-DGILLLELDRLLRPGG 140 (444)
Q Consensus 81 ~i~~a~e~~~~~------~~~~~d~~~lp-~~~~sFDlI~~~~~~l-~~-----------~~d-~~~~L~ei~rvLkPGG 140 (444)
..+... .+... .+...+....+ .....||+|+++-=.. .+ ..+ .-.++..+.+.|+|||
T Consensus 223 ~~nl~l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG 301 (524)
T d2ar0a1 223 LMNCLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 301 (524)
T ss_dssp HHHHHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHh-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence 433322 22211 12222211111 2345799999974110 00 011 2258999999999999
Q ss_pred EEEEEcCCC
Q 013393 141 YFVYSSPEA 149 (444)
Q Consensus 141 ~lvis~p~~ 149 (444)
++.+..|..
T Consensus 302 r~aiIlP~~ 310 (524)
T d2ar0a1 302 RAAVVVPDN 310 (524)
T ss_dssp EEEEEEEHH
T ss_pred cEEEEEehH
Confidence 999988753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.91 E-value=0.0028 Score=59.20 Aligned_cols=113 Identities=7% Similarity=0.134 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhccCCceeEEEecccccchhhhhcc-CCCceEEEeccccCCCchh----HHhhccccccccccccCCCCC
Q 013393 273 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMSARLK----IIYDRGLIGTVHDWCESFSTY 347 (444)
Q Consensus 273 v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~-~~~~wv~~~~~~~~~~~l~----~~~~rg~~~~~~~~~~~~~~y 347 (444)
++.....++ |+.+. .|+|+..|+||+|..+. ..++=|.-+.. +++++. .+-+.||....+--+.-+.+.
T Consensus 50 ~~~~~~~l~--l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~git~--s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 50 RKLALDKLN--LEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGLTL--SENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHHTTC--CCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEES--CHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHHhcC--CCCCC--EEEEecCcchHHHHHHHHhcCcceeeccc--hHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence 344555555 55554 69999999999998775 44653333322 234433 356678877666555566666
Q ss_pred CcccchhhccccccccccC-----CCChhhhhhhhcccccCCcEEEEec
Q 013393 348 PRTYDLLHAWKVFSEIEER-----GCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 348 ~~~~dl~h~~~~~~~~~~~-----~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+-+||-|=+-+.|-+.... .=+...++-++.|+|+|||.+++.+
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 7899988888888755321 1235789999999999999998853
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.81 E-value=0.007 Score=58.01 Aligned_cols=100 Identities=18% Similarity=0.288 Sum_probs=61.1
Q ss_pred CeEEEECCCcchHHHHHhhC--------------------CceEEEcCcccchHHHHHHHHHcC-CCcEEEE---ecCcc
Q 013393 46 RNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALERG-IPSTLGV---LGTKR 101 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~~--------------------~V~gvdis~~dis~a~i~~a~e~~-~~~~~~~---~d~~~ 101 (444)
-+|.|+||.+|..+..+.+. .|.--|+-..|............. .+..|.. +.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 36999999999766433321 234456666665433322221111 1112222 12333
Q ss_pred CCCCCCCccEEEeccccccccc---------------------------------cHHHHHHHHHhhcCCCeEEEEEc
Q 013393 102 LPYPSRSFELAHCSRCRIDWLQ---------------------------------RDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 102 lp~~~~sFDlI~~~~~~l~~~~---------------------------------d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
--||+++.|++||+. .+||+. |+..+|+.=.+-|+|||+++++.
T Consensus 133 rLfP~~Slh~~~Ss~-alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehh-hhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 448899999999998 499953 22357777778899999999864
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=95.81 E-value=0.0047 Score=57.03 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=63.6
Q ss_pred CceeEEEecccccchhhhhccCC---CceEEEeccccC-CCchhHHh----hcccccc-ccccccCCCCCCcccchhhcc
Q 013393 287 NTFRNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIY----DRGLIGT-VHDWCESFSTYPRTYDLLHAW 357 (444)
Q Consensus 287 ~~~rnvmDm~a~~G~f~a~~~~~---~~wv~~~~~~~~-~~~l~~~~----~rg~~~~-~~~~~~~~~~y~~~~dl~h~~ 357 (444)
.+=..|+|...|.|.++..|.+. .. +|+-+|- ++-|...- +.|+=-. .+.-.+.++ +|.+||+|++.
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~~~~fD~v~~~ 101 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICH 101 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhccccccccccccccccccccc-ccCCceEEEEe
Confidence 34467999999999998777652 22 2333342 23333322 2233111 122233444 47899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
++|..+. +...+|-+|-|+|+|||++++.|
T Consensus 102 ~~l~~~~----d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 102 AFLLHMT----TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp SCGGGCS----SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhcCC----CHHHHHHHHHHHcCcCcEEEEEE
Confidence 9998543 36789999999999999999866
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=95.73 E-value=0.0028 Score=57.63 Aligned_cols=105 Identities=23% Similarity=0.340 Sum_probs=69.6
Q ss_pred hccCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchh----HHhhcccccccccc-ccCCCCCCcccchhhc
Q 013393 283 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK----IIYDRGLIGTVHDW-CESFSTYPRTYDLLHA 356 (444)
Q Consensus 283 ~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~----~~~~rg~~~~~~~~-~~~~~~y~~~~dl~h~ 356 (444)
.+.....+.|+|+..+-|.++.+|... |--. ++=.+-+..+. .+-+.|+-.-..-- ...|...|..||++.+
T Consensus 75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~--~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~ 152 (253)
T d1tw3a2 75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVS--ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152 (253)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCE--EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred hcCCccCCEEEEeCCCCCHHHHHHHHhcceeE--EEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheee
Confidence 355678899999999999999998643 3211 12223344443 34556664322211 2235556789999999
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 357 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 357 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.+++-.+... +...+|-++=|.|+|||.++|-|
T Consensus 153 ~~vlh~~~d~--~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 153 SFVLLNWPDH--DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCch--hhHHHHHHHHHhcCCCcEEEEEe
Confidence 9988744221 24578999999999999999854
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.72 E-value=0.0049 Score=59.59 Aligned_cols=97 Identities=11% Similarity=0.023 Sum_probs=62.9
Q ss_pred CeEEEECCCcchHHHHHhh-C---CceEEEcCcccchHHHHHHHHHcCCC----------------cEEEEecCccCCC-
Q 013393 46 RNVLDVGCGVASFGAYLLS-H---DIIAMSLAPNDVHENQIQFALERGIP----------------STLGVLGTKRLPY- 104 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~-~---~V~gvdis~~dis~a~i~~a~e~~~~----------------~~~~~~d~~~lp~- 104 (444)
.+|||..||+|..+...+. . .|+..|+++..+.....+.. .++.. +.+...|...+..
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~-lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVM-LNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHH-HHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHH-hcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 3899999999999986543 2 57778888766544443333 23321 2222333222211
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 105 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 105 ~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
..+.||+|..-- + .....++..+.+.++.||.+.++...
T Consensus 126 ~~~~fDvIDiDP----f-Gs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 126 RHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp STTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCcCCcccCCC----C-CCcHHHHHHHHHHhccCCEEEEEecC
Confidence 245799998643 3 34567999999999999999998654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0098 Score=55.00 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=44.8
Q ss_pred CeEEEECCCcchHHHHHhh--CCceEEEcCcccchHHHHHHHHHc-CCCcEEEEecCccCCCCCCCccEEEec
Q 013393 46 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 115 (444)
Q Consensus 46 ~rVLDVGCGtG~~a~~La~--~~V~gvdis~~dis~a~i~~a~e~-~~~~~~~~~d~~~lp~~~~sFDlI~~~ 115 (444)
.+|||||+|+|.++..|++ +.++++++++..+......+.... ..++.+...|+...+++ .++.|+++
T Consensus 23 d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~~vV~N 93 (278)
T d1zq9a1 23 DVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVAN 93 (278)
T ss_dssp CEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEE
T ss_pred CEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhhhhhcc
Confidence 3899999999999999987 367888877654332222221111 23567778887776654 35677765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.69 E-value=0.0047 Score=53.98 Aligned_cols=97 Identities=21% Similarity=0.306 Sum_probs=66.6
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhh----ccccccc-cccccCCCCCCcccchhhccccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIGTV-HDWCESFSTYPRTYDLLHAWKVFSEIE 364 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~----rg~~~~~-~~~~~~~~~y~~~~dl~h~~~~~~~~~ 364 (444)
.|+|+.+|-|.++..|.+... +|+-+|- ++-+..+-+ .|+.-.+ +.=-+.++....+||+|.+.++|..+.
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 589999999999999986542 5666664 355655443 3332121 111223444459999999999988542
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 365 ERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 365 ~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
. .++..+|-|+-|+|+|||.++|.+.
T Consensus 117 ~--~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 117 P--LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp H--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred h--hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 1 2477789999999999999998754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0086 Score=54.79 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccc-cccccccccCCCCCCcccchhhccccccc
Q 013393 286 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 286 ~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~-~~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
..+-..|+|+.+|-|.|+.+|.+. |-+ +|+=+|- +.-+...-+|+- +...+.=.+.++.-+.+||+|.+...+..
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~--~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 159 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEI--TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK 159 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCC--EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence 345668999999999999998653 322 2333443 345555555432 22233335566766799999987543321
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
+-||.|+|||||.+++-.
T Consensus 160 -----------~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 160 -----------AEELARVVKPGGWVITAT 177 (268)
T ss_dssp -----------HHHHHHHEEEEEEEEEEE
T ss_pred -----------HHHHHHHhCCCcEEEEEe
Confidence 468999999999999853
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.55 E-value=0.0087 Score=51.85 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=81.8
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hccccc----c-ccccccCCCCCCcccch
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIG----T-VHDWCESFSTYPRTYDL 353 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~~~----~-~~~~~~~~~~y~~~~dl 353 (444)
+....-.+|+|+.+|.|.++.+|...- -+|+-++- +.-+..+- ..|+-. + ..|+-+.+ .+.+||+
T Consensus 48 l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~--~~~~fD~ 122 (194)
T d1dusa_ 48 VVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV--KDRKYNK 122 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--TTSCEEE
T ss_pred CCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh--ccCCceE
Confidence 334455689999999999998887532 15555553 33333332 223322 1 23444443 3689999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhccceeEEeccccccCCCCCCCceEEEE
Q 013393 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIA 432 (444)
Q Consensus 354 ~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 432 (444)
|-++..|..... .+..++-++.|.|+|||.+++- ....-.+.+...++..-+++.... ++ +.=+||-+
T Consensus 123 Ii~~~p~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~---~~-----~gf~vl~a 191 (194)
T d1dusa_ 123 IITNPPIRAGKE---VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVT---IK-----GGYRVLKS 191 (194)
T ss_dssp EEECCCSTTCHH---HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEE---EE-----TTEEEEEE
T ss_pred EEEcccEEecch---hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEE---ec-----CCcEEEEE
Confidence 999887752221 2466788899999999987663 222234555666666666665331 11 13467877
Q ss_pred Ee
Q 013393 433 KK 434 (444)
Q Consensus 433 ~k 434 (444)
+|
T Consensus 192 ~K 193 (194)
T d1dusa_ 192 KK 193 (194)
T ss_dssp EC
T ss_pred EE
Confidence 76
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=94.98 E-value=0.0037 Score=57.03 Aligned_cols=105 Identities=22% Similarity=0.266 Sum_probs=70.4
Q ss_pred ccCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCchh----HHhhccccccccccc-cCCCCCCcccchhhcc
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK----IIYDRGLIGTVHDWC-ESFSTYPRTYDLLHAW 357 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l~----~~~~rg~~~~~~~~~-~~~~~y~~~~dl~h~~ 357 (444)
+..+.++.|+|+..+.|.++++|.+. |- .+++=.+-|..+. .+-+.|+-....-.. ..|..-|-+||++...
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~--~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~ 154 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPH--LRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS 154 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTT--CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcC--cEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcc
Confidence 45678899999999999999999743 32 1333333333333 355666644221111 2344567889999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEecc
Q 013393 358 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 392 (444)
Q Consensus 358 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~ 392 (444)
++|-.+... +...+|-++=|.|+|||.++|-|.
T Consensus 155 ~vLh~~~d~--~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 155 FVLLNWSDE--DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp SCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccccCcH--HHHHHHHHHHhhcCCcceeEEEEe
Confidence 988744322 246788999999999999998764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=94.98 E-value=0.0066 Score=53.69 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=72.8
Q ss_pred EEEecccccchhhhhccC---CCceEEEeccccC-CCchhHHh----hccccccccccccCCCCCC-cccchhhcccccc
Q 013393 291 NVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIY----DRGLIGTVHDWCESFSTYP-RTYDLLHAWKVFS 361 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~---~~~wv~~~~~~~~-~~~l~~~~----~rg~~~~~~~~~~~~~~y~-~~~dl~h~~~~~~ 361 (444)
.|+|+..|.|..+.+|.. .|-+ +|+=+|- +.-|...- +.+....+|--|..+..+| ..+|++.+..++.
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~--~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSC--EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEeccchhhHHHHHHHhhcCCCC--ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 699999999998877653 3443 5666664 45666543 3478888888887776666 6889999988887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
.+. .=+...+|-||=|.|+|||.+|+.|
T Consensus 120 ~~~--~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 120 FLP--PEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GSC--GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC--hhhHHHHHHHHHHhCCCCceeeccc
Confidence 432 1246789999999999999999975
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.0071 Score=55.32 Aligned_cols=96 Identities=13% Similarity=0.201 Sum_probs=59.6
Q ss_pred EEEecccccchhhhhccCC-----CceEEEeccccCC-CchhHHhhc-----cccccccccccC-C---------CCCCc
Q 013393 291 NVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMS-ARLKIIYDR-----GLIGTVHDWCES-F---------STYPR 349 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~-----~~wv~~~~~~~~~-~~l~~~~~r-----g~~~~~~~~~~~-~---------~~y~~ 349 (444)
+|+|+.+|.|.|+..|.+. +--...++=++.. ..|...-+| .+-.+--+|... + +.=+.
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 6999999999997766421 2222234444422 333333222 222222233211 1 22268
Q ss_pred ccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 350 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 350 ~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+||+|++.++|-... ++...|-+|-|+|+|||.++|-
T Consensus 123 ~fD~I~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK----DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEccceecCC----CHHHHHHHHHhhCCCCCEEEEE
Confidence 999999999998432 4889999999999999988773
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.013 Score=53.25 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCeEEEECCCcchHHHHHhhC--CceEEEcCcccchHHHHHHHHHc---CCCcEEEEec
Q 013393 24 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLG 98 (444)
Q Consensus 24 y~~~l~~~l~~~~~~L~~g~~~~rVLDVGCGtG~~a~~La~~--~V~gvdis~~dis~a~i~~a~e~---~~~~~~~~~d 98 (444)
.++.+.+.+.. .+ ...|||||||+|.++..|++. .++++++++. .++..+++ ..++.+...|
T Consensus 9 ~~~~Iv~~~~~-----~~---~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~-----l~~~L~~~~~~~~~~~ii~~D 75 (252)
T d1qyra_ 9 VIDSIVSAINP-----QK---GQAMVEIGPGLAALTEPVGERLDQLTVIELDRD-----LAARLQTHPFLGPKLTIYQQD 75 (252)
T ss_dssp HHHHHHHHHCC-----CT---TCCEEEECCTTTTTHHHHHTTCSCEEEECCCHH-----HHHHHHTCTTTGGGEEEECSC
T ss_pred HHHHHHHhcCC-----CC---CCEEEEECCCchHHHHHHHccCCceEEEEeccc-----hhHHHHHHhhhccchhHHhhh
Confidence 45556666643 22 337999999999999999985 6777766653 33333333 2356677777
Q ss_pred CccCC
Q 013393 99 TKRLP 103 (444)
Q Consensus 99 ~~~lp 103 (444)
+..++
T Consensus 76 ~l~~~ 80 (252)
T d1qyra_ 76 AMTFN 80 (252)
T ss_dssp GGGCC
T ss_pred hhhhc
Confidence 66654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.018 Score=53.60 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhhhccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhccc---cccccccccCC
Q 013393 270 QVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESF 344 (444)
Q Consensus 270 ~~~v~~y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~---~~~~~~~~~~~ 344 (444)
+.+.+.|.+.+.......+=..|+|+.+|.|.++..+... +.-|..+=+... ......+-..|+ |=+.+.-.+-+
T Consensus 17 ~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l 96 (311)
T d2fyta1 17 KIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV 96 (311)
T ss_dssp HHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh
Confidence 4555677766643222222346999999999987655433 222322211111 122345566666 34445455666
Q ss_pred CCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 345 STYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 345 ~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
..-+..+|+|=+.-+++.+. ..-.+..++-.++|.|+|||.+|-
T Consensus 97 ~~~~~~~D~Ivse~~~~~~~-~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 97 HLPVEKVDVIISEWMGYFLL-FESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCSCSCEEEEEECCCBTTBT-TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCccccceEEEEeeeeeecc-cccccHHHHHHHHhcCCCCcEEec
Confidence 66678999998876665332 223467778889999999999884
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.47 E-value=0.0046 Score=57.18 Aligned_cols=103 Identities=18% Similarity=0.315 Sum_probs=65.1
Q ss_pred ccCCceeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHh----hccccccccc-------cc---cCCCCCC
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHD-------WC---ESFSTYP 348 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~----~rg~~~~~~~-------~~---~~~~~y~ 348 (444)
++....++|+|+.+|-|.++..|.+.. + +|+=+|-. +-|.+.- ++++-..++. |- ..++ ++
T Consensus 52 l~~~~~~~vLD~GcG~G~~~~~la~~g-~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 127 (292)
T d1xvaa_ 52 LRQHGCHRVLDVACGTGVDSIMLVEEG-F--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AG 127 (292)
T ss_dssp HHHTTCCEEEESSCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CT
T ss_pred hhhcCCCEEEEecCCCcHHHHHHHHcC-C--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CC
Confidence 444456789999999999999998764 2 67777743 5454432 3333322221 11 1222 34
Q ss_pred cccchhhccc-cccccccCCC---ChhhhhhhhcccccCCcEEEEe
Q 013393 349 RTYDLLHAWK-VFSEIEERGC---SFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 349 ~~~dl~h~~~-~~~~~~~~~c---~~~~~~~e~drilrp~g~~~~r 390 (444)
.+||++-+.+ .|..+..... +...+|-||-|+|+|||.+|+.
T Consensus 128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 6899987643 5554322112 3556999999999999999983
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=94.38 E-value=0.0053 Score=55.47 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=67.6
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc----c---cccccccccCCCC-CCcccchhhccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----L---IGTVHDWCESFST-YPRTYDLLHAWKVF 360 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg----~---~~~~~~~~~~~~~-y~~~~dl~h~~~~~ 360 (444)
..|+|+.+|.|+++..+.+...- +|+=+|- +..|...-+|- . +-.++.=+...+. -..+||+|.+...+
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 47999999999999888754432 4555563 46666665542 1 1112222222222 25689999887766
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEE--eccHHHHHHHH
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVII--RDKSSIINYIR 400 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~--rd~~~~~~~~~ 400 (444)
-..-...=.+..++-+|-|+|+|||.+|+ .|...++.+.+
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~ 145 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYK 145 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHH
Confidence 53211212367899999999999999987 34444444433
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=94.34 E-value=0.011 Score=51.21 Aligned_cols=93 Identities=20% Similarity=0.303 Sum_probs=65.3
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhH----Hhhcccc---ccccccccCCCCCCcccchhhccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLI---GTVHDWCESFSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~~---~~~~~~~~~~~~y~~~~dl~h~~~~~~~ 362 (444)
.|+|+..|.|.++-.|.+.- | .|+=++- +..|.. +-..|+- ....|.++. .++.+||+|.+..+|..
T Consensus 33 rvLDiGcG~G~~~~~la~~g-~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANG-Y--DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL--TFDGEYDFILSTVVMMF 107 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC--CCCCCEEEEEEESCGGG
T ss_pred cEEEECCCCCHHHHHHHHHh-h--hhccccCcHHHHHHHHHHhhhccccchhhhheecccc--cccccccEEEEeeeeec
Confidence 59999999999999998753 2 3444443 234443 3344442 233444443 35799999999999985
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
+.. =+...++-++-|.|+|||.+++.
T Consensus 108 ~~~--~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 108 LEA--QTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp SCT--THHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCH--HHHHHHHHHHHHHcCCCcEEEEE
Confidence 432 24778999999999999999884
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.013 Score=53.28 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=50.2
Q ss_pred CCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH----------------HHHHHHHHHHhhccc
Q 013393 345 STYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKW 408 (444)
Q Consensus 345 ~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~----------------~~~~~~~~~~~~~~w 408 (444)
+..|..||++-+..+++.+-.++.++..+|-++-|+|||||.+|+.+.. -..++|+++++.--.
T Consensus 152 ~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf 231 (263)
T d2g72a1 152 SPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGY 231 (263)
T ss_dssp CSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTE
T ss_pred CcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCC
Confidence 3446789999998888766555567889999999999999999995431 134778888877666
Q ss_pred ee
Q 013393 409 DG 410 (444)
Q Consensus 409 ~~ 410 (444)
++
T Consensus 232 ~v 233 (263)
T d2g72a1 232 KV 233 (263)
T ss_dssp EE
T ss_pred eE
Confidence 54
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.64 E-value=0.056 Score=45.17 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=60.3
Q ss_pred CCCCCCCCeEEEECCC-cchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC--------C-CC
Q 013393 39 LNNGGNIRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--------P-YP 105 (444)
Q Consensus 39 L~~g~~~~rVLDVGCG-tG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l--------p-~~ 105 (444)
+++++ +||=+||| .|.++..+++. +|+++ +.++..++.+++.+....+........ . ..
T Consensus 24 ~~~g~---~vlV~G~G~vG~~~~~~ak~~Ga~vi~v-----~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 24 VQLGT---TVLVIGAGPIGLVSVLAAKAYGAFVVCT-----ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp CCTTC---EEEEECCSHHHHHHHHHHHHTTCEEEEE-----ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCC---EEEEEcccccchhhHhhHhhhccccccc-----chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence 44555 89999998 56777777663 34444 556777888888776654432211110 0 01
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcCC
Q 013393 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 148 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~ 148 (444)
.+.+|+|+-.- .....+..+.+.|+|||.+++....
T Consensus 96 g~g~D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 96 GDLPNVTIDCS-------GNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp SSCCSEEEECS-------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred ccCCceeeecC-------CChHHHHHHHHHHhcCCceEEEecC
Confidence 24689887432 1235788899999999999986533
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.41 E-value=0.038 Score=51.53 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhh--hccCCceeEEEecccccchhhhhccCC-CceEEEeccccC-CCchhHHhhcccc---ccccccccC
Q 013393 271 VRVVDYWKQMKT--VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGLI---GTVHDWCES 343 (444)
Q Consensus 271 ~~v~~y~~~l~~--~l~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~-~~~l~~~~~rg~~---~~~~~~~~~ 343 (444)
.+...|.+.+.. .+..+ ..|+|+.+|.|.++-.+... .--|.-|=+... ......+-..|+- -+.+.--+.
T Consensus 16 ~R~~~y~~ai~~~~~~~~~--~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~ 93 (316)
T d1oria_ 16 VRTLTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEE 93 (316)
T ss_dssp HHHHHHHHHHHTCHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHHHHhccccCCc--CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHH
Confidence 344566555532 22233 35999999999876444322 222322211111 1122345556763 344444455
Q ss_pred CCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 344 FSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 344 ~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
+++-+..+|+|-+.-+.+.+ .+.-.++.++-+++|.|+|||.+|-
T Consensus 94 ~~~~~~~~D~ivs~~~~~~l-~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 94 VELPVEKVDIIISEWMGYCL-FYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCCSSSCEEEEEECCCBBTB-TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccceeEEEeeeeeeeee-ccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 66666899999876555522 2234688999999999999999873
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.24 E-value=0.0045 Score=52.55 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=57.7
Q ss_pred CCCCCCCCCeEEEECCC-cchHHHHHhh---CCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-CCCCCCccEE
Q 013393 38 KLNNGGNIRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELA 112 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCG-tG~~a~~La~---~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-p~~~~sFDlI 112 (444)
.+++++ +||-+|+| .|.++..+++ .+|+++|.++ ..++.+++.|....+...+.... .-..+.||+|
T Consensus 24 ~~~~g~---~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~-----~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 24 GCGPGK---KVGIVGLGGIGSMGTLISKAMGAETYVISRSS-----RKREDAMKMGADHYIATLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp TCSTTC---EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS-----TTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEE
T ss_pred CcCCCC---EEEEECCCCcchhHHHHhhhccccccccccch-----hHHHHhhccCCcEEeeccchHHHHHhhhcccceE
Confidence 445565 89999998 6777777766 3566665544 45567777776543322211111 1123579988
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 113 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 113 ~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+......+ ...+....+.|+|||++++..
T Consensus 96 i~~~~~~~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 96 VVCASSLT-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EECCSCST-----TCCTTTGGGGEEEEEEEEECC
T ss_pred EEEecCCc-----cchHHHHHHHhhccceEEEec
Confidence 76432111 112456789999999999854
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.04 Score=51.57 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=61.5
Q ss_pred eEEEecccccchhhhhccCCC-ceEEEeccccCCC----chhHHhhccccc---cccccccCCCCCCcccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRMSA----RLKIIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~-~wv~~~~~~~~~~----~l~~~~~rg~~~---~~~~~~~~~~~y~~~~dl~h~~~~~~ 361 (444)
..|+|+.+|.|..+..+.... .-| +-++... ....+-..|+.. +.|.-.+.++.-+..+|+|-+.-++.
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V---~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHV---IGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEE---EEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEE---EEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 379999999998865554321 222 2223222 233566777744 34444555555568999998876665
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEE
Q 013393 362 EIEERGCSFEDLLIEMDRMLRPEGFVI 388 (444)
Q Consensus 362 ~~~~~~c~~~~~~~e~drilrp~g~~~ 388 (444)
.+ ..--.+..++.+++|+|+|||.+|
T Consensus 117 ~~-~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FL-LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TB-STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ee-ccchhHHHHHHHHHhccCCCeEEE
Confidence 22 223457889999999999999987
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.78 E-value=0.059 Score=47.74 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=62.4
Q ss_pred eeEEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc----cc-ccccc-ccccCCCCCCcccchhhcc-ccc
Q 013393 289 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVH-DWCESFSTYPRTYDLLHAW-KVF 360 (444)
Q Consensus 289 ~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r----g~-~~~~~-~~~~~~~~y~~~~dl~h~~-~~~ 360 (444)
-.+|+|+.+|-|.++-.|.+... +|+=+|.. .-|.+.-+| |+ +-+++ |.. .|+. +++||+|=+. +.|
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLNI-NRKFDLITCCLDST 112 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCCC-SCCEEEEEECTTGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchh-hhcc-cccccccceeeeee
Confidence 35799999999999999987542 56666643 556554443 43 22222 332 3443 7899987542 344
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 361 SEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 361 ~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
..+. +.=++..+|-+|-|.|+|||.+|+
T Consensus 113 ~~~~-~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 113 NYII-DSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGCC-SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eccC-CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4221 112467789999999999999997
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.048 Score=45.93 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=57.9
Q ss_pred CCCCCCCCCeEEEECC--CcchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC--------C
Q 013393 38 KLNNGGNIRNVLDVGC--GVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------Y 104 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGC--GtG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp--------~ 104 (444)
.+++++ +||=.|+ |.|..+..+++. .+++++ .++...+.+++.|....+ |..+.. .
T Consensus 25 ~~~~g~---~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~-----~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 25 CVKAGE---SVLVHGASGGVGLAACQIARAYGLKILGTA-----GTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYV 93 (174)
T ss_dssp CCCTTC---EEEEETCSSHHHHHHHHHHHHTTCEEEEEE-----SSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHH
T ss_pred CCCCCC---EEEEEeccccccccccccccccCccccccc-----ccccccccccccCccccc---ccccccHHHHhhhhh
Confidence 455665 8999997 466777777763 344443 345566778877765433 222211 1
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEE
Q 013393 105 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 145 (444)
Q Consensus 105 ~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis 145 (444)
..+.||+|+.... ...+.+..++|+|||.++..
T Consensus 94 ~~~g~d~v~d~~g--------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 94 GEKGIDIIIEMLA--------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CTTCEEEEEESCH--------HHHHHHHHHHEEEEEEEEEC
T ss_pred ccCCceEEeeccc--------HHHHHHHHhccCCCCEEEEE
Confidence 3467999986531 24688889999999999985
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.42 E-value=0.15 Score=43.93 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=60.9
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCC--------
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-------- 104 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~-------- 104 (444)
.+++|+ +||-+|||. |..+..+++. .|+++| .++..++.|++.+....+ +....++
T Consensus 22 ~v~~G~---tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d-----~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t 90 (195)
T d1kola2 22 GVGPGS---TVYVAGAGPVGLAAAASARLLGAAVVIVGD-----LNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALL 90 (195)
T ss_dssp TCCTTC---EEEEECCSHHHHHHHHHHHHTTCSEEEEEE-----SCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHH
T ss_pred CCCCCC---EEEEECcCHHHHHHHHHHHhhcccceeeec-----ccchhhHhhhhccccEEE---eCCCcCHHHHHHHHh
Confidence 455666 999999997 6666666652 455554 456677888888754322 2211111
Q ss_pred CCCCccEEEecccc-----ccc---cccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 105 PSRSFELAHCSRCR-----IDW---LQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 105 ~~~sFDlI~~~~~~-----l~~---~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....+|+++-.-.. .++ .......+..+.++++|||.+++..
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 23458988843210 011 1223478999999999999999864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.03 Score=49.57 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=60.5
Q ss_pred eEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHhhcc------ccccccccccCCCCCC-cccchhhcccccc
Q 013393 290 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG------LIGTVHDWCESFSTYP-RTYDLLHAWKVFS 361 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~~rg------~~~~~~~~~~~~~~y~-~~~dl~h~~~~~~ 361 (444)
.+|+|+.+|.|.+|..+.+.+. -+|+-++- +..+...-++. ...+.+++.+-....| .+||++-.+...+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 5799999999999999977643 34555553 34555443332 2233444443333333 5677765444333
Q ss_pred cc-ccCCCChhhhhhhhcccccCCcEEEEe
Q 013393 362 EI-EERGCSFEDLLIEMDRMLRPEGFVIIR 390 (444)
Q Consensus 362 ~~-~~~~c~~~~~~~e~drilrp~g~~~~r 390 (444)
.. ..+.-+....+-|+=|+|||||.+++-
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 11 112234567889999999999999884
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=91.65 E-value=0.073 Score=45.09 Aligned_cols=93 Identities=26% Similarity=0.358 Sum_probs=58.1
Q ss_pred CCCCCCCCCeEEEECCC-cchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecC---------ccCC
Q 013393 38 KLNNGGNIRNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT---------KRLP 103 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCG-tG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~---------~~lp 103 (444)
++++|+ +||=+||| .|.++..+++. .|+++ +.++...+.+++.|....+...+. .++.
T Consensus 25 ~~~~G~---~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~-----~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 25 ESFAGK---TVVIQGAGPLGLFGVVIARSLGAENVIVI-----AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp SCCBTC---EEEEECCSHHHHHHHHHHHHTTBSEEEEE-----ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCCC---EEEEECCCccchhheeccccccccccccc-----ccccccccccccccceEEEeccccchHHHHHHHHHhh
Confidence 345555 89999998 36777777763 34444 455677788888776443321111 0111
Q ss_pred CCCCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 104 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 104 ~~~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
....||+|+-.- .. ...++...+.|+|||.+++..
T Consensus 97 -~~~g~Dvvid~v--G~-----~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 97 -HGRGADFILEAT--GD-----SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp -TTSCEEEEEECS--SC-----TTHHHHHHHHEEEEEEEEECC
T ss_pred -CCCCceEEeecC--Cc-----hhHHHHHHHHhcCCCEEEEEe
Confidence 234599987432 11 246788899999999998754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.00 E-value=0.15 Score=45.52 Aligned_cols=90 Identities=19% Similarity=0.321 Sum_probs=54.6
Q ss_pred EEEecCcc-C-CCCCCCccEEEeccc---c-------ccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHH
Q 013393 94 LGVLGTKR-L-PYPSRSFELAHCSRC---R-------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWN 161 (444)
Q Consensus 94 ~~~~d~~~-l-p~~~~sFDlI~~~~~---~-------l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~ 161 (444)
+.++|..+ + .+|++++|+|++.-= . ..|.......+.++.|+|||||.+++.....+...........
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~ 86 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLIS 86 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHH
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhh
Confidence 44556333 2 256899999998631 0 1122223577899999999999999865443332222223455
Q ss_pred HHHHHHHhcCeEEEeeecceeEeecc
Q 013393 162 AMYDLLKSMCWKIVSKKDQTVIWAKP 187 (444)
Q Consensus 162 ~l~~l~~~~gf~~v~~~~~~~~w~k~ 187 (444)
.+..+.+..+|.... ..+|.++
T Consensus 87 ~~~~~~~~~~~~~~~----~i~~~k~ 108 (279)
T d1eg2a_ 87 IISHMRQNSKMLLAN----LIIWNYP 108 (279)
T ss_dssp HHHHHHHHCCCEEEE----EEEEECS
T ss_pred HHHHHHhccCceeee----eeeeccc
Confidence 667778888886543 2345554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.31 E-value=0.27 Score=41.26 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=58.8
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-----C-CCC
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPS 106 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-----p-~~~ 106 (444)
.+++++ +||=+|||. |.++..+++. .|+++ +.++...+.+++.|....+...+ +.+ . ...
T Consensus 24 ~~~~g~---~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~-----d~~~~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g 94 (174)
T d1jqba2 24 DIEMGS---SVVVIGIGAVGLMGIAGAKLRGAGRIIGV-----GSRPICVEAAKFYGATDILNYKN-GHIEDQVMKLTNG 94 (174)
T ss_dssp TCCTTC---CEEEECCSHHHHHHHHHHHTTTCSCEEEE-----CCCHHHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTT
T ss_pred CCCCCC---EEEEEcCCcchhhhhhhhhcccccccccc-----cchhhhHHHHHhhCccccccccc-hhHHHHHHHHhhc
Confidence 445565 788899985 7888888773 45555 44566777888877543332111 110 0 123
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
..||+|+-.-. . ...+.+..+.|||||.+++..
T Consensus 95 ~G~D~vid~~g--~-----~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 95 KGVDRVIMAGG--G-----SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp SCEEEEEECSS--C-----TTHHHHHHHHEEEEEEEEECC
T ss_pred cCcceEEEccC--C-----HHHHHHHHHHHhcCCEEEEEe
Confidence 45999875431 1 246788889999999999854
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=89.87 E-value=0.05 Score=49.29 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=67.3
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccC-CCchhH----Hhhccccccc--cccccCCCCCCcccchhhcccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLIGTV--HDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~----~~~rg~~~~~--~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
.|+|+.+|-|.++.++..... .|+=+|- +.-+.. +-..|+-..+ -|.-+.++ ..+||++.|+-++.
T Consensus 123 ~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~--~~~fD~V~ani~~~-- 195 (254)
T d2nxca1 123 KVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAE-- 195 (254)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHH--
T ss_pred EEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEecccccccc--ccccchhhhccccc--
Confidence 799999999998877764431 3444442 333332 2223442111 12223333 26899998875444
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhccceeE
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~~ 411 (444)
.+..++=++-|+|+|||.+|+.+- .+-.+.+.+.+....|+..
T Consensus 196 -----~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~ 239 (254)
T d2nxca1 196 -----LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEE
T ss_pred -----cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEE
Confidence 256677789999999999998542 1224567777777778763
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.70 E-value=0.076 Score=47.23 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=72.4
Q ss_pred EEEecccccchhhhhccCC----CceEEEeccccCCCchhHHhhcc-ccccccccccCCCCCCcccchhhcccccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMSARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 365 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~----~~wv~~~~~~~~~~~l~~~~~rg-~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~~~ 365 (444)
.|+|..++-|.++..|.+. .|+-..+-|.--..-....-.|+ ++-+..|...+...-+.++|..-+...+.
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~---- 152 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA---- 152 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC----
T ss_pred EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc----
Confidence 6999999999999888642 24444433322112222334444 34566666666544445666543333333
Q ss_pred CCCChhhhhhhhcccccCCcEEEEe----------ccHHHHHHHHHHHhhcccee
Q 013393 366 RGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDG 410 (444)
Q Consensus 366 ~~c~~~~~~~e~drilrp~g~~~~r----------d~~~~~~~~~~~~~~~~w~~ 410 (444)
+..+...++.|+.|+|+|||.++|- +...+.+++.+.++.-..+.
T Consensus 153 ~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 153 QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEE
T ss_pred chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 2345788899999999999998883 33455677777777666665
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.16 E-value=0.3 Score=42.37 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=59.9
Q ss_pred EEEecccccchhhhhccCC-C-ceEEEeccccC-CCchh----HHhhccccccccccccCCCCCCcccchhhcccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLK----IIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 363 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~-~-~wv~~~~~~~~-~~~l~----~~~~rg~~~~~~~~~~~~~~y~~~~dl~h~~~~~~~~ 363 (444)
.|+|+.++-|+++..|.+. | . -|+=++- +.-+. ..-.|+.+-..+-=++....|+..+|.+ +-+|..+
T Consensus 59 ~VLDlGcG~G~~~~~la~~v~~g---~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v--d~v~~~~ 133 (209)
T d1nt2a_ 59 RVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV--DLIYQDI 133 (209)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE--EEEEECC
T ss_pred EEEEeCCcCCHHHHHHHHhccCC---eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceE--EEEEecc
Confidence 7999999999998888641 1 1 1333332 22222 3345565555554455556677766643 3445433
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEec
Q 013393 364 EERGCSFEDLLIEMDRMLRPEGFVIIRD 391 (444)
Q Consensus 364 ~~~~c~~~~~~~e~drilrp~g~~~~rd 391 (444)
. +......++.|+.|+|+|||.++|-+
T Consensus 134 ~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 134 A-QKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp C-STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 2 23456788999999999999998854
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.13 E-value=0.24 Score=43.73 Aligned_cols=133 Identities=11% Similarity=0.219 Sum_probs=74.2
Q ss_pred EEEecccccchhhhhccCC-----CceEEEeccccCCCchhHHhhccc-cccccccccC--CCCCCcccchhhccccccc
Q 013393 291 NVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGL-IGTVHDWCES--FSTYPRTYDLLHAWKVFSE 362 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~-----~~wv~~~~~~~~~~~l~~~~~rg~-~~~~~~~~~~--~~~y~~~~dl~h~~~~~~~ 362 (444)
.|+|+.++-|+++..|.+. .|+-.-.-|.-........-.|+. ..+..|-..+ ++-.+-..|.++.+-...
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~- 154 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQP- 154 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST-
T ss_pred EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcccc-
Confidence 6999999999999998742 244333232222223334445553 3444443322 122223456655432111
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEe----------ccHHHHHHHHHHHhhccceeE-EeccccccCCCCCCCceEEE
Q 013393 363 IEERGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDGW-LSEVEPRIDALSSSEERVLI 431 (444)
Q Consensus 363 ~~~~~c~~~~~~~e~drilrp~g~~~~r----------d~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~l~ 431 (444)
=....++-++.|.|+|||.++|- +...+..+++++.+. .++.. ..+++ |+. ...-+.|
T Consensus 155 -----~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~----p~~-~~H~~vv 223 (227)
T d1g8aa_ 155 -----TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLE----PYE-KDHALFV 223 (227)
T ss_dssp -----THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT----TTS-SSEEEEE
T ss_pred -----chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCC----CCC-CceEEEE
Confidence 12466899999999999999884 335666777777654 45542 11222 221 1245778
Q ss_pred EEec
Q 013393 432 AKKK 435 (444)
Q Consensus 432 ~~k~ 435 (444)
++|+
T Consensus 224 ~rK~ 227 (227)
T d1g8aa_ 224 VRKT 227 (227)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.47 E-value=0.13 Score=42.61 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=54.9
Q ss_pred CCCCCCCCeEEEECCCc-chHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc---C-CCCCCCccEEE
Q 013393 39 LNNGGNIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---L-PYPSRSFELAH 113 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGt-G~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~---l-p~~~~sFDlI~ 113 (444)
+++++ +||=+|||. |..+..+++.. |..+...+.++..++.+++.|....+...+... + ....+.+|.|.
T Consensus 25 ~~~g~---~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 25 ARPGQ---WVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp CCTTC---EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCC---EEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccc
Confidence 34454 788899974 56666666631 123333355677778888877654332111100 0 01123345555
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+... ...+....+.|+|||.+++..
T Consensus 100 ~~~~--------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 100 TAVS--------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp CCSC--------HHHHHHHHTTEEEEEEEEECC
T ss_pred cccc--------chHHHHHHHHhcCCcEEEEEE
Confidence 4331 246888999999999999854
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=88.29 E-value=0.38 Score=41.59 Aligned_cols=114 Identities=11% Similarity=0.156 Sum_probs=70.7
Q ss_pred eEEEecccccchhhhhccC-CCceEEEeccccCC-Cch----hHHhhccccccccccc------cCCCCCCcccchhhcc
Q 013393 290 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARL----KIIYDRGLIGTVHDWC------ESFSTYPRTYDLLHAW 357 (444)
Q Consensus 290 rnvmDm~a~~G~f~a~~~~-~~~wv~~~~~~~~~-~~l----~~~~~rg~~~~~~~~~------~~~~~y~~~~dl~h~~ 357 (444)
..|+|+.+|.|.|+..|.. .|- .|++-++-. +-+ .-+-++||=.+..-.+ +.|+ |.++|.++..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~--~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~--~~~~d~v~i~ 106 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYLN 106 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCC--CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC--chhhhccccc
Confidence 4689999999999999853 233 256666632 322 2466777633221111 2233 5778877654
Q ss_pred cccccc----ccCCCChhhhhhhhcccccCCcEEEEe-ccHHHHHHHHHHHhhcc
Q 013393 358 KVFSEI----EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK 407 (444)
Q Consensus 358 ~~~~~~----~~~~c~~~~~~~e~drilrp~g~~~~r-d~~~~~~~~~~~~~~~~ 407 (444)
...-.. .++|=--...|-||-|+|+|||.+.|+ |..+..+.+.+......
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 433211 112212257888999999999999775 77787777777776443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.34 Score=42.44 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=75.1
Q ss_pred cCCceeEEEecccccchhhhhccCC-CceEEEeccccCCCch-----hHHhhccc---cccc-cccccCCCC-----CCc
Q 013393 285 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARL-----KIIYDRGL---IGTV-HDWCESFST-----YPR 349 (444)
Q Consensus 285 ~~~~~rnvmDm~a~~G~f~a~~~~~-~~wv~~~~~~~~~~~l-----~~~~~rg~---~~~~-~~~~~~~~~-----y~~ 349 (444)
+..+-+||+.+...+|=-|.+|..- |- ---|+-++..... ..+-.-|+ |-+. .|-.|.++. .+.
T Consensus 56 ~~~~~k~vLEiGt~~GyStl~~a~al~~-~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 56 RLIQAKKALDLGTFTGYSALALALALPA-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred HccCCCeEEEEechhhHHHHHHHHhCCC-CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccC
Confidence 4445779999999998777776531 10 0122223222111 22222333 1111 133343332 267
Q ss_pred ccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH---------------H-HHHHHHHHHhhccceeEEe
Q 013393 350 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------S-IINYIRKFITALKWDGWLS 413 (444)
Q Consensus 350 ~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~---------------~-~~~~~~~~~~~~~w~~~~~ 413 (444)
+||||..++=-+ ...+.+-++=+.|||||.+|+.|.. . +-+-.+.|.+.-+|++...
T Consensus 135 ~fD~ifiD~dk~-------~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~ll 207 (219)
T d2avda1 135 TFDVAVVDADKE-------NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL 207 (219)
T ss_dssp CEEEEEECSCST-------THHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CccEEEEeCCHH-------HHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 899999887333 2444555566899999999996542 1 2223455667788998543
Q ss_pred ccccccCCCCCCCceEEEEEe
Q 013393 414 EVEPRIDALSSSEERVLIAKK 434 (444)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~k 434 (444)
|. .+.++||+|
T Consensus 208 -------Pi---gdGl~ia~K 218 (219)
T d2avda1 208 -------PL---GDGLTLAFK 218 (219)
T ss_dssp -------CS---TTCEEEEEE
T ss_pred -------ec---CCeeEEEEe
Confidence 33 367999998
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.08 E-value=0.12 Score=43.86 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=78.4
Q ss_pred HHHHHHH-HHHHhhhhccCCceeEEEecccccchhhhhccCCCceEEEeccccC-CCchhHHh----hcccc---ccccc
Q 013393 269 WQVRVVD-YWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLI---GTVHD 339 (444)
Q Consensus 269 w~~~v~~-y~~~l~~~l~~~~~rnvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~-~~~l~~~~----~rg~~---~~~~~ 339 (444)
.+++|.. .++.++ ++.+. -|+|+.+|.|+++.+|...- -.|+=++- ++-+..+- ..|+- =++|.
T Consensus 17 t~~eir~~il~~l~--~~~g~--~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g 89 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAE--PGKND--VAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89 (186)
T ss_dssp CCHHHHHHHHHHHC--CCTTC--EEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred ChHHHHHHHHHhcC--CCCCC--EEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC
Confidence 5667754 445454 55554 59999999999999887542 14554554 34444432 23442 12222
Q ss_pred cccCCCCCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEecc-HHHHHHHHHHHhhccceeE
Q 013393 340 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 411 (444)
Q Consensus 340 ~~~~~~~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~-~~~~~~~~~~~~~~~w~~~ 411 (444)
-.+.+.+=..+||++=+.+.- =.+.+++-++-+.|||||.+++-.- .+-..++.+.++...|+..
T Consensus 90 da~~~~~~~~~~D~v~~~~~~-------~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 90 DAPEALCKIPDIDIAVVGGSG-------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp CHHHHHTTSCCEEEEEESCCT-------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred chhhcccccCCcCEEEEeCcc-------ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 212111223567766443311 2478899999999999999988653 4566777777777777654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.37 E-value=0.46 Score=39.60 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccC-----CCCCC
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSR 107 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~l-----p~~~~ 107 (444)
.+++++ +||=+|||. |..+..+++. .++++ +.++...+.+++.|....+. .+.++. ...++
T Consensus 25 ~~~~g~---~VlI~G~G~iG~~~~~~ak~~g~~~v~~~-----~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 25 KVTPAS---SFVTWGAGAVGLSALLAAKVCGASIIIAV-----DIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDG 95 (174)
T ss_dssp CCCTTC---EEEEESCSHHHHHHHHHHHHHTCSEEEEE-----ESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTS
T ss_pred CCCCCC---EEEEeCCCHHHhhhhhcccccccceeeee-----ccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCC
Confidence 455655 899899984 3455555542 33444 34566778888877544332 111111 12245
Q ss_pred CccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 108 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 108 sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.||+|+-.- .-...++++.++++|+|.+++..
T Consensus 96 g~D~vid~~-------G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 96 GVNFALEST-------GSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp CEEEEEECS-------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEEcC-------CcHHHHHHHHhcccCceEEEEEe
Confidence 799987432 12357888999999999999864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=86.68 E-value=0.59 Score=39.11 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=60.2
Q ss_pred CCCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC------CCC
Q 013393 38 KLNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPS 106 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp------~~~ 106 (444)
.+++++ +||=+|||. |.++..+++. .|+.+|.+ +...+.+++.|....+......... ...
T Consensus 25 ~v~~G~---~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~-----~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 25 KVTPGS---TCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN-----GEKFPKAKALGATDCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp CCCTTC---EEEEECCSHHHHHHHHHHHHTTCSEEEEECSC-----GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCC---EEEEECCChHHHHHHHHHHHhCCceeeeeccc-----hHHHHHHHHhCCCcccCCccchhhhhhhHhhhhc
Confidence 456666 899999986 7888777773 45555444 4566788887765443211111100 123
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCC-eEEEEEcC
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPG-GYFVYSSP 147 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPG-G~lvis~p 147 (444)
+.+|+++-.- .-...+.+..+.|+|| |.+++...
T Consensus 97 ~G~d~vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 97 GGVDYSLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp SCBSEEEESS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCcEEEEec-------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 5689887322 2246799999999997 99998653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=86.33 E-value=0.49 Score=41.30 Aligned_cols=72 Identities=14% Similarity=0.038 Sum_probs=45.3
Q ss_pred CCCCCccEEEeccc-------------cccccccHHHHHHHHHhhcCCCeEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 013393 104 YPSRSFELAHCSRC-------------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 170 (444)
Q Consensus 104 ~~~~sFDlI~~~~~-------------~l~~~~d~~~~L~ei~rvLkPGG~lvis~p~~~~~~~~~~~~~~~l~~l~~~~ 170 (444)
.|++++|+|+++-= .-.|.......+.++.|+|+|||.+++.... .....+...+...
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---------~~~~~~~~~~~~~ 89 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---------FNCAFICQYLVSK 89 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---------HHHHHHHHHHHHT
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---------hhhhhhhhhhhcc
Confidence 45788999988631 0011112236788999999999998864221 2234566677888
Q ss_pred CeEEEeeecceeEeeccC
Q 013393 171 CWKIVSKKDQTVIWAKPI 188 (444)
Q Consensus 171 gf~~v~~~~~~~~w~k~l 188 (444)
||.... ..+|.++.
T Consensus 90 g~~~~~----~iiW~k~~ 103 (256)
T d1g60a_ 90 GMIFQN----WITWDKRD 103 (256)
T ss_dssp TCEEEE----EEEECCCC
T ss_pred cceeee----eeEeeecc
Confidence 986543 34787754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.29 E-value=0.18 Score=41.95 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=56.1
Q ss_pred CCCCCCCCCeEEEECCC-cchHHHHHhhC---CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCCCCCCCccEEE
Q 013393 38 KLNNGGNIRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAH 113 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCG-tG~~a~~La~~---~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp~~~~sFDlI~ 113 (444)
++++++ +||=+||| .|.++..+++. .+++++.+ +...+++++.+....+...+........+.||.++
T Consensus 27 ~~~~G~---~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~-----~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vi 98 (168)
T d1uufa2 27 QAGPGK---KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS-----EAKREAAKALGADEVVNSRNADEMAAHLKSFDFIL 98 (168)
T ss_dssp TCCTTC---EEEEECCSHHHHHHHHHHHHTTCEEEEEESS-----GGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEE
T ss_pred CCCCCC---EEEEeccchHHHHHHHHhhcccccchhhccc-----hhHHHHHhccCCcEEEECchhhHHHHhcCCCceee
Confidence 456666 88889997 36777777763 34444433 33446777777654432111111112235799887
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
-.-. . ...+....+.|+|||.+++..
T Consensus 99 d~~g-~------~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 99 NTVA-A------PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ECCS-S------CCCHHHHHTTEEEEEEEEECC
T ss_pred eeee-c------chhHHHHHHHHhcCCEEEEec
Confidence 5431 1 124667789999999999854
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=84.92 E-value=0.32 Score=42.24 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=51.6
Q ss_pred ccCCceeEEEecccccchhhhhccC---CCceEEEeccccC-CCchh----HHhhccccccccccccCCCCCC--cccch
Q 013393 284 AQKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLK----IIYDRGLIGTVHDWCESFSTYP--RTYDL 353 (444)
Q Consensus 284 l~~~~~rnvmDm~a~~G~f~a~~~~---~~~wv~~~~~~~~-~~~l~----~~~~rg~~~~~~~~~~~~~~y~--~~~dl 353 (444)
++.+. .|+|+.++.|.++|.|.. .... |+-++. +..+. .+-..|+-.+-.-.......+| .+||.
T Consensus 73 l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~---V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~ 147 (213)
T d1dl5a1 73 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV 147 (213)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred ccccc--eEEEecCccchhHHHHHHHhCCCCc---EEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhh
Confidence 55554 999999999999988852 2222 222222 12222 1222233222222333344444 67999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 013393 354 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 389 (444)
Q Consensus 354 ~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 389 (444)
|++.+.+... -+ ++=|.|+|||.+++
T Consensus 148 I~~~~~~~~~-------p~---~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 148 IFVTVGVDEV-------PE---TWFTQLKEGGRVIV 173 (213)
T ss_dssp EEECSBBSCC-------CH---HHHHHEEEEEEEEE
T ss_pred hhhhccHHHh-------HH---HHHHhcCCCcEEEE
Confidence 9998866522 12 23367999999987
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.22 E-value=0.73 Score=37.86 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCCCCCCCCeEEEECCC--cchHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCccCC------CC
Q 013393 38 KLNNGGNIRNVLDVGCG--VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YP 105 (444)
Q Consensus 38 ~L~~g~~~~rVLDVGCG--tG~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~lp------~~ 105 (444)
.+++++ +||=+||+ .|..+..+++. .|+++ +.++...+++++.|....+. .+..+.. ..
T Consensus 24 ~~~~g~---~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~-----~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 24 SLDPTK---TLLVVGAGGGLGTMAVQIAKAVSGATIIGV-----DVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITE 94 (170)
T ss_dssp TCCTTC---EEEEETTTSHHHHHHHHHHHHHTCCEEEEE-----ESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTT
T ss_pred CCCCCC---EEEEEeccccceeeeeeccccccccccccc-----ccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhh
Confidence 344554 89999973 55666666552 34444 44566778888877654332 1111110 12
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 106 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 106 ~~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
.+.||+|+... .-...++...+.|+|||.+++..
T Consensus 95 ~~~~d~vid~~-------g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 95 SKGVDAVIDLN-------NSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp TSCEEEEEESC-------CCHHHHTTGGGGEEEEEEEEECC
T ss_pred cccchhhhccc-------ccchHHHhhhhhcccCCEEEEec
Confidence 35699888543 12356788899999999999864
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.22 E-value=0.38 Score=39.41 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=54.1
Q ss_pred CCCCCCCCeEEEECCCc-chHHHHHhhCCceEEEcCcccchHHHHHHHHHcCCCcEEEEecCc---cCC-CCCCCccEEE
Q 013393 39 LNNGGNIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RLP-YPSRSFELAH 113 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGt-G~~a~~La~~~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~---~lp-~~~~sFDlI~ 113 (444)
+++++ +||=.|||. |..+..+++.. +..+...+.++...+++++.|....+...+.. .+. ...+.+|.|.
T Consensus 25 ~~~g~---~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~ 99 (168)
T d1rjwa2 25 AKPGE---WVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVV 99 (168)
T ss_dssp CCTTC---EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCC---EEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEe
Confidence 44555 888899985 45555555531 11233335567777888887755432211100 000 1133455554
Q ss_pred eccccccccccHHHHHHHHHhhcCCCeEEEEEc
Q 013393 114 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 146 (444)
Q Consensus 114 ~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~ 146 (444)
+.. ....+....+.|+|||.+++..
T Consensus 100 ~~~--------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 100 TAV--------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSC--------CHHHHHHHHHHEEEEEEEEECC
T ss_pred ecC--------CHHHHHHHHHHhccCCceEecc
Confidence 322 1357899999999999999864
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.40 E-value=0.68 Score=38.18 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=58.4
Q ss_pred CCCCCCCCeEEEECCCc-chHHHHHhhC----CceEEEcCcccchHHHHHHHHHcCCCcEEEEecCcc------CC-CCC
Q 013393 39 LNNGGNIRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR------LP-YPS 106 (444)
Q Consensus 39 L~~g~~~~rVLDVGCGt-G~~a~~La~~----~V~gvdis~~dis~a~i~~a~e~~~~~~~~~~d~~~------lp-~~~ 106 (444)
+++++ +||=+|||. |.++..+++. .|+++ |.++..++.|++.|....+...+... +. -..
T Consensus 24 ~~~gd---~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~-----d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 24 VTLGH---KVLVCGAGPIGMVTLLVAKAMGAAQVVVT-----DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp CCTTC---EEEEECCSHHHHHHHHHHHHTTCSEEEEE-----ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCCC---EEEEECCCccHHHHHHHHHHcCCceEEec-----cCCHHHHHHHHHhCCcccccccccccccccccccccCC
Confidence 44555 899999985 4555555552 34554 45577888888877654443221100 00 012
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhhcCCCeEEEEEcC
Q 013393 107 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 147 (444)
Q Consensus 107 ~sFDlI~~~~~~l~~~~d~~~~L~ei~rvLkPGG~lvis~p 147 (444)
..+|+|+-.-. ....++...+.++|||.+++...
T Consensus 96 ~g~Dvvid~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 96 CKPEVTIECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCceEEEeccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 46898875431 13578899999999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.39 E-value=0.78 Score=39.74 Aligned_cols=115 Identities=11% Similarity=-0.010 Sum_probs=71.3
Q ss_pred EEEecccccchhhhhccCCCceEEEeccccCC-CchhHHhhc-ccc------------------c-----cccccccCCC
Q 013393 291 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-GLI------------------G-----TVHDWCESFS 345 (444)
Q Consensus 291 nvmDm~a~~G~f~a~~~~~~~wv~~~~~~~~~-~~l~~~~~r-g~~------------------~-----~~~~~~~~~~ 345 (444)
-|+|...|.|-.|-.|.+.- | +|+=+|.. .-+-....+ +.. + ...|.-+--+
T Consensus 48 rvLd~GCG~G~~a~~LA~~G-~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 48 RVFFPLCGKAVEMKWFADRG-H--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp EEEETTCTTCTHHHHHHHTT-C--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred EEEEeCCCCcHHHHHHHhCC-C--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 59999999999999997653 2 46656643 333222211 000 0 0011122224
Q ss_pred CCCcccchhhccccccccccCCCChhhhhhhhcccccCCcEEEEeccH------------HHHHHHHHHHhhccceeE
Q 013393 346 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFITALKWDGW 411 (444)
Q Consensus 346 ~y~~~~dl~h~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~rd~~------------~~~~~~~~~~~~~~w~~~ 411 (444)
.++.+||+|...++|-.+.. =..+.++-+|-|+|||||.+++-... -.-++++.+... .|++.
T Consensus 125 ~~~~~fd~i~~~~~l~~~~~--~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~ 199 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAINP--GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIR 199 (229)
T ss_dssp SCCCCEEEEEESSSTTTSCG--GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred cccCceeEEEEEEEEEeccc--hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEE
Confidence 56788999999988875432 24678999999999999987663110 124667777766 46654
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