Citrus Sinensis ID: 013399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
MAAYACNNNQSNNLVVYPYNFVDFYPQNANFGVVTPQSLGVINPNLISPSQVLVPCNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccEEEEEEcEEccccccccccEEEEEEcccccccHHHHHHHHHHHHHcccccccEEEEcccEEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcEEEEEEEEccHHHcccccHHHHHHHHHHHHHHcc
ccEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEEccEEcccccccccccEEEEccccccccHHHHHHHHHHHHccccHHccccccccEEEEEEEEEccEEEEEEEEEEccccccccccccccHHHccccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcc
maayacnnnqsnnlvvypynfvdfypqnanfgvvtpqslgvinpnlispsqvlvpcnspvflvpsfnfplnpsvldqmdEERSLSLVQLMTneglvpsteeeDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTygsyglgvhgsesdidalclgpefatmAEDFFVVLHNMlksrpevseihcvkdakvplmrfkfdgilidlpyaclhvlsvpenvdvlnpfflrdldetswkslsgvranKCILQLvpdlekfqPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVcqnhpkgslnTLVANFFKtyaywpwptpvmlqdpmlpaagypsetrslmpirlpcspheychsnitrsTFYKIRTEFLrghnttrdlmrpdfdwhflfepfpyskkyARFVRVYLsasnqddlgdwVGWVKSRFRSLILKVSR
maayacnnnqsnnLVVYPYNFVDFYPQNANFGVVTPQSLGVINPNLISPSQVLVPCNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTneglvpsteeedkrrNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQlvpdlekfqPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSAsnqddlgdwvgWVKSRFRSLILKVSR
MAAYACNNNQSNNLVVYPYNFVDFYPQNANFGVVTPQSLGVINPNLISPSQVLVPCNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR
*********QSNNLVVYPYNFVDFYPQNANFGVVTPQSLGVINPNLISPSQVLVPCNSPVFLVPSFNFPLNPSVL*******************************NVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILK***
*********************VDFYPQN***************************************************EERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR
MAAYACNNNQSNNLVVYPYNFVDFYPQNANFGVVTPQSLGVINPNLISPSQVLVPCNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLV********RRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR
*AAYACNNNQSNNLVVYPYNFVDFYPQNANFGVVTPQSLGVINPNLI***********PVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR
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MAAYACNNNQSNNLVVYPYNFVDFYPQNANFGVVTPQSLGVINPNLISPSQVLVPCNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query444 2.2.26 [Sep-21-2011]
Q54J73 809 Poly(A) polymerase OS=Dic yes no 0.833 0.457 0.388 8e-74
Q9BWT3 736 Poly(A) polymerase gamma yes no 0.844 0.509 0.369 7e-67
Q6PCL9 739 Poly(A) polymerase gamma yes no 0.844 0.507 0.367 7e-67
Q9WVP6 641 Poly(A) polymerase beta O no no 0.833 0.577 0.356 3e-62
Q9NRJ5 636 Poly(A) polymerase beta O no no 0.833 0.581 0.356 1e-61
P25500 739 Poly(A) polymerase alpha no no 0.795 0.477 0.364 4e-61
O42617 558 Poly(A) polymerase PAPalp N/A no 0.795 0.632 0.361 5e-61
P51003 745 Poly(A) polymerase alpha no no 0.795 0.473 0.361 7e-61
Q61183 739 Poly(A) polymerase alpha no no 0.795 0.477 0.361 7e-61
Q10295 566 Poly(A) polymerase pla1 O yes no 0.833 0.653 0.335 2e-59
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 Back     alignment and function desciption
 Score =  278 bits (710), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 147/378 (38%), Positives = 224/378 (59%), Gaps = 8/378 (2%)

Query: 69  PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
           P++ +    +D + S  L   + +  L  S EE  KR  ++ KL +IV  W K+V+ ++ 
Sbjct: 58  PISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQVSLKKG 117

Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
            P++  +E  A I T+GSY LGVHG  SDID LC+GP+   M  DFF  L ++LK  PE+
Sbjct: 118 YPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHI-MRSDFFDDLSDILKVHPEI 176

Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENV-DVLNPFFLRDLDETSWKSLS 247
           +E   VKDA VP++   F GI IDL YA L + ++PE + D+++  FL+++DE S  SL+
Sbjct: 177 TEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSILSLN 236

Query: 248 GVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPK 307
           G R    IL+LVP++  F+  LRCIKLWA RRG+Y N+ GFLGGV  A+L A +CQ +P 
Sbjct: 237 GCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARICQLYPN 296

Query: 308 GSLNTLVANFFKTYAYWPWPTPVML---QDPML--PAAGYPSETRS-LMPIRLPCSPHEY 361
            + +T++  FFK Y  W WP P++L   Q+  +  P    P   ++ LMPI  P  P   
Sbjct: 297 SAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKRDKAHLMPIITPAYPSMN 356

Query: 362 CHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQ 421
              N+++ST   +++EF+RG   TR +   +  W  L E   +  +Y+ ++ +   + N+
Sbjct: 357 STYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNE 416

Query: 422 DDLGDWVGWVKSRFRSLI 439
           +D   W GW++S+ R LI
Sbjct: 417 EDSRKWEGWIESKLRFLI 434
Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 Back     alignment and function description
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 Back     alignment and function description
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 Back     alignment and function description
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 Back     alignment and function description
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 Back     alignment and function description
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 Back     alignment and function description
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 Back     alignment and function description
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 Back     alignment and function description
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
147856999 604 hypothetical protein VITISV_014509 [Viti 0.916 0.673 0.698 1e-167
225432026 563 PREDICTED: poly(A) polymerase [Vitis vin 0.921 0.726 0.695 1e-166
255556450492 poly(A) polymerase, putative [Ricinus co 0.822 0.741 0.750 1e-165
297829196507 polynucleotide adenylyltransferase [Arab 0.815 0.714 0.682 1e-149
145338191507 poly(A) polymerase 3 [Arabidopsis thalia 0.813 0.712 0.681 1e-147
224099105483 predicted protein [Populus trichocarpa] 0.795 0.730 0.707 1e-147
32527644483 poly(A) polymerase [Arabidopsis thaliana 0.788 0.724 0.685 1e-144
12322673482 poly(A) polymerase, putative; 41591-3933 0.786 0.724 0.679 1e-142
414888171 545 TPA: hypothetical protein ZEAMMB73_87339 0.828 0.675 0.511 1e-107
357115984 554 PREDICTED: poly(A) polymerase-like [Brac 0.817 0.655 0.511 1e-106
>gi|147856999|emb|CAN79659.1| hypothetical protein VITISV_014509 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/415 (69%), Positives = 344/415 (82%), Gaps = 8/415 (1%)

Query: 28  NANFGVVTPQSLGVINPNLISPSQVLVPCNSPVFLVPSFNFPLNPSVLDQMDEERSLSLV 87
           NA  G V P+ +GVINP+        VP   P  L P   F LNP+VL +M+  RS+SL+
Sbjct: 69  NAPVGFV-PRPVGVINPSFGP-----VPPFDPASL-PQPGFVLNPAVLVRMEHRRSISLL 121

Query: 88  QLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSY 147
           Q M+NEGL+PS EEE KR+NVI+KLKEIVL WVKRVAWQR+ PK+QIA T ATILTYGSY
Sbjct: 122 QFMSNEGLIPSPEEELKRKNVIEKLKEIVLTWVKRVAWQRQRPKQQIAVTSATILTYGSY 181

Query: 148 GLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFD 207
           GLGVHG ESDIDALC+GP FA+MA+DFF+VL NML+SRPEVSEIHCVKDAKVPLMRFKFD
Sbjct: 182 GLGVHGPESDIDALCVGPFFASMADDFFIVLRNMLESRPEVSEIHCVKDAKVPLMRFKFD 241

Query: 208 GILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQP 267
           GI +DLPYA L +L VPEN++VLNP+FLR++DETSWKSLSGVRAN+CILQLVP++E FQ 
Sbjct: 242 GISVDLPYAQLKLLYVPENLNVLNPYFLRNIDETSWKSLSGVRANECILQLVPNVENFQS 301

Query: 268 VLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFFKTYAYWPWP 327
           +LRCIKLWAKRRGVYGNL G+ GGVHLAIL A VCQ +P  +LN L+++FFKT++ WPWP
Sbjct: 302 ILRCIKLWAKRRGVYGNLFGYFGGVHLAILAAFVCQKNPHANLNVLMSSFFKTFSGWPWP 361

Query: 328 TPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRD 387
           TPV L+D  LP  G   ETR+LMPI+LPCSP+ YCHSNIT+STFY+I TE   GH  TRD
Sbjct: 362 TPVALEDGRLPTGGT-RETRALMPIQLPCSPYGYCHSNITKSTFYRITTELTLGHALTRD 420

Query: 388 LMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKV 442
           L+R DFDW+ +FEPF YSKKY+RF+++YLS+SNQD+LGDWVGWVKSRFR L+ KV
Sbjct: 421 LLRLDFDWNDIFEPFCYSKKYSRFIKIYLSSSNQDELGDWVGWVKSRFRFLLAKV 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432026|ref|XP_002279844.1| PREDICTED: poly(A) polymerase [Vitis vinifera] gi|296083219|emb|CBI22855.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556450|ref|XP_002519259.1| poly(A) polymerase, putative [Ricinus communis] gi|223541574|gb|EEF43123.1| poly(A) polymerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297829196|ref|XP_002882480.1| polynucleotide adenylyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297328320|gb|EFH58739.1| polynucleotide adenylyltransferase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145338191|ref|NP_187308.3| poly(A) polymerase 3 [Arabidopsis thaliana] gi|62320636|dbj|BAD95301.1| poly(A) polymerase [Arabidopsis thaliana] gi|332640894|gb|AEE74415.1| poly(A) polymerase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224099105|ref|XP_002311376.1| predicted protein [Populus trichocarpa] gi|222851196|gb|EEE88743.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|32527644|gb|AAP86215.1| poly(A) polymerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|12322673|gb|AAG51325.1|AC020580_5 poly(A) polymerase, putative; 41591-39333 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|414888171|tpg|DAA64185.1| TPA: hypothetical protein ZEAMMB73_873393 [Zea mays] Back     alignment and taxonomy information
>gi|357115984|ref|XP_003559765.1| PREDICTED: poly(A) polymerase-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
TAIR|locus:2084274 507 PAPS3 "poly(A) polymerase 3" [ 0.813 0.712 0.681 6.5e-138
TAIR|locus:2134113 765 nPAP "nuclear poly(a) polymera 0.878 0.509 0.4 1.5e-76
TAIR|locus:2030943 713 PAPS1 "poly(A) polymerase 1" [ 0.846 0.527 0.398 8.4e-74
TAIR|locus:2043560 800 PAPS2 "poly(A) polymerase 2" [ 0.846 0.47 0.398 1.4e-73
DICTYBASE|DDB_G0288259 809 papA "poly(A) polymerase" [Dic 0.833 0.457 0.388 8.9e-70
ZFIN|ZDB-GENE-040426-1256 744 papolg "poly(A) polymerase gam 0.826 0.493 0.380 2.3e-64
UNIPROTKB|A5D7N5 740 PAPOLG "Uncharacterized protei 0.844 0.506 0.372 4.2e-63
UNIPROTKB|F1SQL7 741 PAPOLG "Uncharacterized protei 0.844 0.506 0.369 8.8e-63
UNIPROTKB|J9NS30 813 PAPOLG "Uncharacterized protei 0.844 0.461 0.369 1.1e-62
RGD|1310337 739 Papolg "poly(A) polymerase gam 0.844 0.507 0.369 1.4e-62
TAIR|locus:2084274 PAPS3 "poly(A) polymerase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1350 (480.3 bits), Expect = 6.5e-138, P = 6.5e-138
 Identities = 248/364 (68%), Positives = 299/364 (82%)

Query:    79 DEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETH 138
             D+E S+SL QLM NEGL+PS E+E KRR VI +L++IV+ WVK VAWQ RLP+ QI  T+
Sbjct:    14 DDESSISLRQLMVNEGLIPSLEDEVKRRGVINQLRKIVVRWVKNVAWQHRLPQNQIDATN 73

Query:   139 ATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAK 198
             ATIL YGSYGLGV+GSESDIDALC+GP FA++AEDFF+ L +MLKSR EVSE+HCVKDAK
Sbjct:    74 ATILPYGSYGLGVYGSESDIDALCIGPFFASIAEDFFISLRDMLKSRREVSELHCVKDAK 133

Query:   199 VPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQL 258
             VPL+RFKFDGIL+DLPYA L VLS+P NVDVLNPFFLRD+DETSWK LSGVRANKCILQL
Sbjct:   134 VPLIRFKFDGILVDLPYAQLRVLSIPNNVDVLNPFFLRDIDETSWKILSGVRANKCILQL 193

Query:   259 VPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVANFF 318
             VP LE FQ +LRC+KLWAKRRGVYGNL+GFLGGVH+AIL A VC   P  +L++L+ANFF
Sbjct:   194 VPSLELFQSLLRCVKLWAKRRGVYGNLNGFLGGVHMAILAAFVCGYQPNATLSSLLANFF 253

Query:   319 KTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEF 378
              T+A+W WPTPV+L +   P+ G P     LMPI+LPC  H+YC+S ITRSTFYKI  EF
Sbjct:   254 YTFAHWQWPTPVVLLEDTYPSTGAPP---GLMPIQLPCGSHQYCNSTITRSTFYKIVAEF 310

Query:   379 LRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSL 438
             L GHN T+D ++ +F W  LFE +PY+  Y  F +++LSA+NQ+DL DWVGWVKSRFR L
Sbjct:   311 LLGHNLTKDYLKLNFSWKDLFELYPYANTYTWFTKIHLSAANQEDLSDWVGWVKSRFRCL 370

Query:   439 ILKV 442
             ++K+
Sbjct:   371 LIKI 374
GO:0003723 "RNA binding" evidence=IEA
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0031123 "RNA 3'-end processing" evidence=IEA
GO:0043631 "RNA polyadenylation" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
GO:0006397 "mRNA processing" evidence=RCA
TAIR|locus:2134113 nPAP "nuclear poly(a) polymerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030943 PAPS1 "poly(A) polymerase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043560 PAPS2 "poly(A) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288259 papA "poly(A) polymerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7N5 PAPOLG "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQL7 PAPOLG "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NS30 PAPOLG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310337 Papolg "poly(A) polymerase gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 1e-145
PTZ00418 593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 3e-90
COG5186 552 COG5186, PAP1, Poly(A) polymerase [RNA processing 6e-90
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 1e-22
pfam04926141 pfam04926, PAP_RNA-bind, Poly(A) polymerase predic 1e-06
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 6e-06
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information 
 Score =  418 bits (1077), Expect = e-145
 Identities = 153/334 (45%), Positives = 206/334 (61%), Gaps = 9/334 (2%)

Query: 77  QMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAE 136
             D E + SL++ +  EGL  S EE  KR  V++KL ++V  WVK+V+ Q+ +P+     
Sbjct: 17  PADLELTDSLIEFLKEEGLFESEEESKKREEVLEKLNKLVKEWVKKVSEQKGMPERAAEA 76

Query: 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKD 196
               I T+GSY LGVHG  SDID LC+ P+  T  EDFF   + +LK RPEV+E+  V+D
Sbjct: 77  AGGKIFTFGSYRLGVHGPGSDIDTLCVAPKHVTR-EDFFSSFYEILKLRPEVTELVPVED 135

Query: 197 AKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCIL 256
           A VP+++FKFDGI IDL +A L +  VP+++D+L+   LR+LDE S +SL+G R    IL
Sbjct: 136 AFVPIIKFKFDGIEIDLLFASLALPRVPDDLDLLDDSLLRNLDEKSVRSLNGCRVTDEIL 195

Query: 257 QLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKGSLNTLVAN 316
           +LVP+ + F+  LR IKLWAKRRG+Y N+ GFLGGV  AILVA VCQ +P  S +TLV  
Sbjct: 196 RLVPNKDVFRTALRAIKLWAKRRGIYSNVLGFLGGVAWAILVARVCQLYPNASPSTLVRK 255

Query: 317 FFKTYAYWPWPTPVMLQ----DPMLPAAG----YPSETRSLMPIRLPCSPHEYCHSNITR 368
           FF+ ++ W WP PV+L+     P+         YPS+   LMPI  P  P      N+TR
Sbjct: 256 FFRIFSQWQWPNPVLLKPIEEGPLNFRVWDPRLYPSDRYHLMPIITPAYPSMNSTHNVTR 315

Query: 369 STFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPF 402
           ST   I  EF RG   T +++     W  LFEP 
Sbjct: 316 STLKVITEEFKRGLEITSEILLGKAPWSDLFEPH 349

The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta- sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different. Length = 349
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 444
KOG2245 562 consensus Poly(A) polymerase and related nucleotid 100.0
PTZ00418 593 Poly(A) polymerase; Provisional 100.0
COG5186 552 PAP1 Poly(A) polymerase [RNA processing and modifi 100.0
PF04928254 PAP_central: Poly(A) polymerase central domain; In 100.0
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
KOG1906 514 consensus DNA polymerase sigma [Replication, recom 100.0
KOG2277 596 consensus S-M checkpoint control protein CID1 and 99.85
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.85
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.67
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 99.64
COG1746 443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.34
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 99.06
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 98.42
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 98.29
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 98.08
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.93
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.85
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 97.84
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.79
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.33
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 97.25
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 97.07
COG166997 Predicted nucleotidyltransferases [General functio 96.51
PF14091152 DUF4269: Domain of unknown function (DUF4269) 96.49
COG1708128 Predicted nucleotidyltransferases [General functio 95.84
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 95.83
PRK13746262 aminoglycoside resistance protein; Provisional 95.38
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 93.81
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 93.37
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 92.82
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 89.88
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 89.72
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 88.3
COG1665315 Predicted nucleotidyltransferase [General function 87.81
KOG3793362 consensus Transcription factor NFAT, subunit NF45 87.41
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 82.87
PF10620213 MdcG: Phosphoribosyl-dephospho-CoA transferase Mdc 80.35
PF03445138 DUF294: Putative nucleotidyltransferase DUF294; In 80.15
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-113  Score=875.65  Aligned_cols=385  Identities=44%  Similarity=0.776  Sum_probs=367.8

Q ss_pred             CCCCcccCCCCCCCCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc
Q 013399           56 CNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIA  135 (444)
Q Consensus        56 ~~~~~~~~~~~~~~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~  135 (444)
                      +.++..++++|.+...   |++.|+.++.+|++.|+++|+||++||..+|.+||.+|++|+++|+++++.++|+++.++.
T Consensus        10 ~~~~~~Gvt~PiS~a~---p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~   86 (562)
T KOG2245|consen   10 PSTKSYGVTQPISTAG---PTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIE   86 (562)
T ss_pred             CccccccccCCcccCC---CcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh
Confidence            4578899988766554   5599999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEecccccCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeecccc
Q 013399          136 ETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPY  215 (444)
Q Consensus       136 ~~~~~l~~FGS~~lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf  215 (444)
                      .++++|+|||||++|||+|+||||.+|++|+|++ |+|||..|.++|++.++|+++++|++|+||||||+++||+|||.|
T Consensus        87 ~aggkIftfGSYRLGVhg~GADIDtLcV~Prhv~-R~DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllf  165 (562)
T KOG2245|consen   87 NAGGKIFTFGSYRLGVHGPGADIDTLCVGPRHVS-RSDFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLF  165 (562)
T ss_pred             hcCceEEeccceeecccCCCCCcceeeecccccc-HHHHHHHHHHHHhcCccccccccccccccceEEEEecCeeeeeee
Confidence            9999999999999999999999999999999999 579999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCccccCCCchhccccchhhhhhcchhhhHHHHHHHcCCccchhHHHHHHHHHHHHhccCCCcCcccchHHHH
Q 013399          216 ACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLA  295 (444)
Q Consensus       216 ~~~~~~~~p~~~~~~~~~~L~~ld~~s~~slnG~R~~~~I~~~vp~~~~Fr~llr~IK~WAk~RgI~~~~~G~Lgg~s~a  295 (444)
                      |+++...+|+++++.||.+|++||++|+|||||||+||.|+++||+.+.||.++|+||+|||+||||+|.+|||||++||
T Consensus       166 ArL~l~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA  245 (562)
T KOG2245|consen  166 ARLALPVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWA  245 (562)
T ss_pred             hhcccccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCceeecCCC-----CCCCCC---CCCCCCcceeeCCCCCCCcccCCCC
Q 013399          296 ILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPAAGY---PSETRSLMPIRLPCSPHEYCHSNIT  367 (444)
Q Consensus       296 lLva~~~Ql~P~~sl~~LL~~FF~~Ys~fdw~~pV~l~~g~-----~~~~~~---~~~~~~~m~IitP~~P~~N~a~nVs  367 (444)
                      ||||++||+|||++++.|+.+||..|++|+||+||+++...     .+.|++   +.+..|+||||||+||+||++||||
T Consensus       246 ~LVARiCQLYPNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS  325 (562)
T KOG2245|consen  246 MLVARICQLYPNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVS  325 (562)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCccccccccccc
Confidence            99999999999999999999999999999999999987542     234543   2223699999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcCCCCCcccccCcCCCchhhcceeEEEEEeCChhcccceeeeehhhHHHHHHhhcC
Q 013399          368 RSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKVSR  444 (444)
Q Consensus       368 ~st~~~I~~Ef~rA~~il~~i~~~~~~W~~L~~~~~ff~~y~~yl~i~v~a~~~~~~~~~~G~vESrlr~Lv~~LE~  444 (444)
                      +||+++|++||+||++|+++|..++.+|++|||+++||.+|+|||+|+++|.++|++.+|.||||||+|.|+.+||+
T Consensus       326 ~ST~~Vi~~Ef~~g~~I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~  402 (562)
T KOG2245|consen  326 RSTLKVITEEFKRGLEICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLER  402 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999995

>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information
>COG1665 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A Back     alignment and domain information
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
1q79_A 514 Crystal Structure Of Mammalian Poly(A) Polymerase L 4e-63
1q78_A 514 Crystal Structure Of Poly(A) Polymerase In Complex 9e-63
1f5a_A 513 Crystal Structure Of Mammalian Poly(A) Polymerase L 9e-60
2o1p_A 546 Structure Of Yeast Poly(A) Polymerase In A Somewhat 3e-58
1fa0_A 537 Structure Of Yeast Poly(A) Polymerase Bound To Mang 3e-58
2hhp_A 530 Structure Of Yeast Poly(A) Polymerase In A Closed C 3e-58
2q66_A 525 Structure Of Yeast Poly(A) Polymerase With Atp And 3e-57
3nyb_A323 Structure And Function Of The Polymerase Core Of Tr 7e-06
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  238 bits (608), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 212/379 (55%), Gaps = 9/379 (2%)
Query: 69  PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRR 128
           P++ +   + D   +  LV+ +   G+    EE  +R  ++ KL  +V  W++ ++  + 
Sbjct: 25  PISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKN 84
Query: 129 LPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEV 188
           LP+  I      I T+GSY LGVH   +DIDALC+ P     + DFF   ++ LK + EV
Sbjct: 85  LPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEV 143
Query: 189 SEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSG 248
            ++  V++A VP+++  FDGI ID+ +A L + ++PE++D+ +   L++LD    +SL+G
Sbjct: 144 KDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRXIRSLNG 203
Query: 249 VRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPKG 308
            R    IL LVP+++ F+  LR IKLWAKR  +Y N+ GFLGGV  A+LVA  CQ +P  
Sbjct: 204 CRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA 263
Query: 309 SLNTLVANFFKTYAYWPWPTPVMLQDPM-----LPAAG---YPSETRSLMPIRLPCSPHE 360
             +TLV  FF  ++ W WP PV+L+ P      LP       PS+   LMPI  P  P +
Sbjct: 264 IASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323
Query: 361 YCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASN 420
               N++ ST   +  EF +G   T +++    +W  LFE   + +KY  ++ +  SA  
Sbjct: 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPT 383
Query: 421 QDDLGDWVGWVKSRFRSLI 439
           +    +WVG V+S+ R L+
Sbjct: 384 EKQRLEWVGLVESKIRILV 402
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514 Back     alignment and structure
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513 Back     alignment and structure
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546 Back     alignment and structure
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537 Back     alignment and structure
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530 Back     alignment and structure
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525 Back     alignment and structure
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A Rna Surveillance Complex Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 1e-119
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 1e-113
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 1e-19
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 6e-12
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 9e-12
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 2e-11
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 3e-09
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 6e-06
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
1r89_A 437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.45
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.18
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 98.21
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 97.79
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.6
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 97.23
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 97.15
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.11
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 95.62
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 95.12
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 94.13
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 92.76
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 91.56
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 90.6
1jaj_A174 DNA polymerase beta-like protein; CIS peptide, vir 89.7
1jms_A381 Terminal deoxynucleotidyltransferase; polymerase; 88.89
3b0x_A 575 DNA polymerase beta family (X family); structural 88.64
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A* Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 444
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 7e-64
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 2e-60
d1q79a1150 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid 8e-59
d2q66a1150 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid 3e-57
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 4e-14
d1q79a3134 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t 3e-07
d2q66a3 178 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t 1e-04
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  202 bits (515), Expect = 7e-64
 Identities = 63/181 (34%), Positives = 103/181 (56%), Gaps = 1/181 (0%)

Query: 79  DEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETH 138
           D   +  LV+ +   G+    EE  +R  ++ KL  +V  W++ ++  + LP+  I    
Sbjct: 17  DCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVG 76

Query: 139 ATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAK 198
             I T+GSY LGVH   +DIDALC+ P       DFF   ++ LK + EV ++  V++A 
Sbjct: 77  GKIFTFGSYRLGVHTKGADIDALCVAPRHVD-RSDFFTSFYDKLKLQEEVKDLRAVEEAF 135

Query: 199 VPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQL 258
           VP+++  FDGI ID+ +A L + ++PE++D+ +   L++LD    +SL+G R    IL L
Sbjct: 136 VPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHL 195

Query: 259 V 259
           V
Sbjct: 196 V 196
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134 Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 100.0
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 100.0
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 100.0
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 100.0
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.93
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.55
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.36
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 98.13
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.85
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 97.28
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 97.06
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 96.27
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 96.14
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 96.13
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 95.7
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 95.34
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 94.81
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.3e-48  Score=360.38  Aligned_cols=190  Identities=34%  Similarity=0.610  Sum_probs=183.6

Q ss_pred             CCCCCCCChHHHHHhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccCCeEEEEecccc
Q 013399           69 PLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYG  148 (444)
Q Consensus        69 ~l~~~~~~~~d~~~s~~L~~~l~~~~~~Ps~ee~~~R~~vl~~L~~iv~~w~~~~~~~~~~~~~~~~~~~~~l~~FGS~~  148 (444)
                      |++.+.|++.|++.+++|.++|++++++||+||.++|++|+++|++++++|+++++.++|+++..++.++++|+|||||+
T Consensus         7 PiS~~~Pt~~D~~~s~~L~~~L~~~~~~ps~ee~~~R~~vl~~L~~lv~~~~~~~~~~~~~~~~~~~~~~~~v~~FGS~~   86 (196)
T d1q79a2           7 PISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYR   86 (196)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHH
T ss_pred             CcccCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhccCCcEEEEecccc
Confidence            45778889999999999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             cCCCCCCCCceEEeecCCcccchHHHHHHHHHHHhcCCCcceeEEeccCceeEEEEEECCeeeccccccccccCCCcccc
Q 013399          149 LGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVD  228 (444)
Q Consensus       149 lGv~~p~SDID~v~v~p~~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~ArVPIIKf~~~gI~vDLsf~~~~~~~~p~~~~  228 (444)
                      +|+|+|+||||++|++|.+++ +++||..++++|++.+.++++++|++|+||||||+++||+|||+|++++...+|++++
T Consensus        87 lgv~~p~SDID~~~i~p~~~~-~~~ff~~l~~~L~~~~~v~~v~~I~~A~VPiiK~~~~gi~iDlsfa~l~~~~~p~~l~  165 (196)
T d1q79a2          87 LGVHTKGADIDALCVAPRHVD-RSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLD  165 (196)
T ss_dssp             HTCCCTTCCEEEEEEECTTSC-HHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSSBCTTCC
T ss_pred             ccccCCCCCccEEEecCCcCC-HHHHHHHHHHHHhcCCCcceEEEeccccccEEEEEEcCeeEeehhhhcccCCCCcccc
Confidence            999999999999999999988 5799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhccccchhhhhhcchhhhHHHHHHHc
Q 013399          229 VLNPFFLRDLDETSWKSLSGVRANKCILQLV  259 (444)
Q Consensus       229 ~~~~~~L~~ld~~s~~slnG~R~~~~I~~~v  259 (444)
                      +.++++|++||++++|||||+|+|+.|+++|
T Consensus       166 l~~~~lL~~ld~~~~rslNG~Rv~~~il~lV  196 (196)
T d1q79a2         166 LRDDSLLKNLDIRCIRSLNGCRVTDEILHLV  196 (196)
T ss_dssp             TTCGGGGTTCCHHHHHHHHHHHHHHHHHTSS
T ss_pred             cCChHHHhcCChhhhhhhccHHHHHHHHhhC
Confidence            9999999999999999999999999999875
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure