Citrus Sinensis ID: 013450

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---

MALVGSTSITPTKSSFVQPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTDC

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHcccccEEEEcccccHHHHHHHHHHHccccccccEEEEEcccHHHHHHHcHHHHHHHHHccccEEEEccccccccEEccccccccccccccccccc

ccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccEccccEccccccccEccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHccHHHHHHccccccccccccccEEEEEccccccccccEEEEEcccccccEEEEcccccHHHHHHHHHHHccccccccEEEEEEccHHHHHHHcHHHHHHHHHcccEEEEEEccccccEEEccccccccccHHEEEEccc

malvgstsitptkssfvqpqsqpfitkprsnihpisavhaadsakppsavktttkapepvlktsnvgpqkwtvdswkskkalqlpeypdkeELESVLKtlddfppivfaGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLmfggqmpvVKVGrmagqfakprsdpfeekngvklpsyrgdnvngdafdeksrnpdpqRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNldftehseqgdrYRELAHRVDEALGFmsaagltvdhpimtttefwtsheclllpyeqsltrldstsglyydcsahflwvgertrqldGAHVEFLKGvanplgikvsdkmdpnELVKLIEIlnpqnkpgrITIITRMGAENMRVKLPHLIRAVRRSGQIvtwvsdpmhgntikapcglktrpfdsirvntdc

malvgstsitptkssfvqpqsqpfiTKPRSNIHPISAvhaadsakppsavktttkapepvlktsnvgpqkwtvdswKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQfakprsdpfeekngvklpsyrgdnvngdafdeksrnpdpQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGvanplgikvsdkMDPNELVKLieilnpqnkpgRITIITRMGAENMRVKLPHLIRAVRRSGQIvtwvsdpmhgntikapcglktrpfdsirvntdc

MALVGSTSITPTKSSFVQPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGearsleerlaeaaMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTDC

***********************************************************************************************VLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMA*******************************************LIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKT************

**************************************************************************SWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAK**********GVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTDC

*********TPTKSSFVQPQSQPFITKPRSNIHPISAV*****************APEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTDC

*********************************PI**************************************DSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTDC

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		443	2.2.26 [Sep-21-2011]
P27608		542	Phospho-2-dehydro-3-deoxy	N/A	no	0.966	0.789	0.822	0.0
P37216		541	Phospho-2-dehydro-3-deoxy	N/A	no	0.988	0.809	0.798	0.0
P21357		538	Phospho-2-dehydro-3-deoxy	N/A	no	0.959	0.789	0.829	0.0
Q75W16		539	Phospho-2-dehydro-3-deoxy	yes	no	0.909	0.747	0.845	0.0
Q75LR2		554	Phospho-2-dehydro-3-deoxy	no	no	0.977	0.781	0.743	0.0
P37215		511	Phospho-2-dehydro-3-deoxy	N/A	no	0.909	0.788	0.800	0.0
P37822		511	Phospho-2-dehydro-3-deoxy	N/A	no	0.907	0.786	0.8	0.0
P29976		525	Phospho-2-dehydro-3-deoxy	no	no	0.911	0.769	0.796	0.0
Q00218		507	Phospho-2-dehydro-3-deoxy	no	no	0.905	0.790	0.789	0.0
A0MH68		493	Probable phospho-2-dehydr	N/A	no	0.848	0.762	0.653	1e-147

>sp\|P27608\|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1	Back alignment and function desciption

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/444 (82%), Positives = 389/444 (87%), Gaps = 16/444 (3%)

Query: 11  PTKSSFVQPQS---QPF--------ITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEP 59
           P KS  VQ QS    P          TKP   + PISA+H++DS+K P      +  P P
Sbjct: 14  PNKSQLVQNQSLLPSPLKNVSFTTNSTKPVRFVQPISAIHSSDSSKNPIVSDKPSSKPSP 73

Query: 60  -----VLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARS 114
                    + V   +WTV+SWKSKKALQLPEYP++EEL+SVLKT+++FPPIVFAGEARS
Sbjct: 74  PAATVTAAATTVTKTEWTVESWKSKKALQLPEYPNQEELQSVLKTIEEFPPIVFAGEARS 133

Query: 115 LEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGR 174
           LEERL EAAMG+AFLLQGGDCAESFKEFNANNIRDTFRILLQMG VLMFGGQMPV+KVGR
Sbjct: 134 LEERLGEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGR 193

Query: 175 MAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLL 234
           MAGQFAKPRSD FEEKNGVKLPSYRGDNVNGDAFD KSR PDPQRLIRAYCQSAATLNLL
Sbjct: 194 MAGQFAKPRSDNFEEKNGVKLPSYRGDNVNGDAFDAKSRTPDPQRLIRAYCQSAATLNLL 253

Query: 235 RAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTT 294
           RAFATGGYAAMQR+ QWNLDFTEHSEQGDRYRELA+RVDEALGFM+AAGLTVDHPIM TT
Sbjct: 254 RAFATGGYAAMQRINQWNLDFTEHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMKTT 313

Query: 295 EFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLG 354
           EFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHF+WVGERTRQLDGAHVEFL+GVANPLG
Sbjct: 314 EFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFIWVGERTRQLDGAHVEFLRGVANPLG 373

Query: 355 IKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWV 414
           IKVSDKMDP+ LVKLIEILNP NK GRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWV
Sbjct: 374 IKVSDKMDPSALVKLIEILNPDNKAGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWV 433

Query: 415 SDPMHGNTIKAPCGLKTRPFDSIR 438
           SDPMHGNTIKAPCGLKTRPFDSIR
Sbjct: 434 SDPMHGNTIKAPCGLKTRPFDSIR 457

Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 4

>sp\|P37216\|AROG_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1	Back alignment and function description

>sp\|P21357\|AROF_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2	Back alignment and function description

>sp\|Q75W16\|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1	Back alignment and function description

>sp\|Q75LR2\|AROF_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2	Back alignment and function description

>sp\|P37215\|AROF_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1	Back alignment and function description

>sp\|P37822\|AROG_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1	Back alignment and function description

>sp\|P29976\|AROF_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2	Back alignment and function description

>sp\|Q00218\|AROG_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2	Back alignment and function description

>sp\|A0MH68\|AROF_CATRO Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		443
224063263		531	2-dehydro-3-deoxyphosphoheptonate aldola	0.972	0.811	0.866	0.0
224084626		531	2-dehydro-3-deoxyphosphoheptonate aldola	0.972	0.811	0.863	0.0
2398679		535	3-deoxy-D-arabino-heptulosonate 7-phosph	0.968	0.801	0.850	0.0
76782190		539	putative 3-deoxy-D-arabino-heptulosonate	0.984	0.808	0.835	0.0
255545782		535	Phospho-2-dehydro-3-deoxyheptonate aldol	0.975	0.807	0.858	0.0
262181539		548	3-deoxy-D-arabino-heptulosonate-7-phosph	0.986	0.797	0.806	0.0
225459235		548	PREDICTED: phospho-2-dehydro-3-deoxyhept	0.986	0.797	0.804	0.0
114193		542	RecName: Full=Phospho-2-dehydro-3-deoxyh	0.966	0.789	0.822	0.0
350534836		541	phospho-2-dehydro-3-deoxyheptonate aldol	0.988	0.809	0.798	0.0
356500707		532	PREDICTED: phospho-2-dehydro-3-deoxyhept	0.970	0.808	0.829	0.0

>gi\|224063263\|ref\|XP_002301067.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa] gi\|222842793\|gb\|EEE80340.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/441 (86%), Positives = 405/441 (91%), Gaps = 10/441 (2%)

Query: 6   STSITPTKSSFVQPQSQP-----FITKPRSNIHPISAVHAADSAKPPSAVKT---TTKAP 57
           S+S+ PTKS  + P ++P     F TKP  +I  ISAVH+AD +K PS +KT   T+   
Sbjct: 5   SSSVIPTKS--LIPSNKPHHPCFFTTKPSRSILHISAVHSADPSKSPSPIKTPAATSTKA 62

Query: 58  EPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEE 117
             V  T+NVG  KWTV+SWKSKKALQLPEYP+KE+L+SVL+TLD FPPIVFAGEAR+LEE
Sbjct: 63  ATVAPTTNVGTGKWTVESWKSKKALQLPEYPNKEDLDSVLETLDAFPPIVFAGEARNLEE 122

Query: 118 RLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAG 177
           RLAEAAMG AFLLQGGDCAESFKEFNANNIRDTFRILLQMG VLMFGGQMPV+KVGRMAG
Sbjct: 123 RLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAG 182

Query: 178 QFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAF 237
           QFAKPRSDP EEKNGVKLPSYRGDNVNGDAFDEKSR PDPQR+IRAYCQSAATLNLLRAF
Sbjct: 183 QFAKPRSDPLEEKNGVKLPSYRGDNVNGDAFDEKSRIPDPQRMIRAYCQSAATLNLLRAF 242

Query: 238 ATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFW 297
           ATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFM+AAGLTVDHPIMTTTEFW
Sbjct: 243 ATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAAAGLTVDHPIMTTTEFW 302

Query: 298 TSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKV 357
           TSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLW GERTRQLDGAHVEFL+GVANPLGIKV
Sbjct: 303 TSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWAGERTRQLDGAHVEFLRGVANPLGIKV 362

Query: 358 SDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDP 417
           SDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWVSDP
Sbjct: 363 SDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDP 422

Query: 418 MHGNTIKAPCGLKTRPFDSIR 438
           MHGNTIKAPCGLKTRPFD+IR
Sbjct: 423 MHGNTIKAPCGLKTRPFDAIR 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224084626\|ref\|XP_002307364.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa] gi\|118486265\|gb\|ABK94974.1\| unknown [Populus trichocarpa] gi\|222856813\|gb\|EEE94360.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|2398679\|emb\|CAA75092.1\| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia]	Back alignment and taxonomy information

>gi\|76782190\|gb\|ABA54865.1\| putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 [Fagus sylvatica]	Back alignment and taxonomy information

>gi\|255545782\|ref\|XP_002513951.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis] gi\|223547037\|gb\|EEF48534.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|262181539\|gb\|ACY29660.1\| 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 02 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225459235\|ref\|XP_002285754.1\| PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi|114193|sp|P27608.1|AROF_TOBAC RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1; AltName: Full=DAHP synthase 1; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 1; Flags: Precursor gi|170225|gb|AAA34068.1| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Nicotiana tabacum] gi|228697|prf||1808327A deoxyheptulosonate phosphate synthase

Back alignment and taxonomy information

>gi|350534836|ref|NP_001234418.1| phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Solanum lycopersicum] gi|584778|sp|P37216.1|AROG_SOLLC RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; AltName: Full=DAHP synthase 2; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 2; Flags: Precursor gi|410488|emb|CAA79856.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Solanum lycopersicum]

Back alignment and taxonomy information

>gi\|356500707\|ref\|XP_003519173.1\| PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		443
TAIR\|locus:2009547		527	AT1G22410 [Arabidopsis thalian	0.981	0.825	0.765	5e-179
TAIR\|locus:2005526		507	DHS2 "3-deoxy-d-arabino-heptul	0.936	0.818	0.755	2.1e-171
TAIR\|locus:2005525		525	DHS1 "3-deoxy-D-arabino-heptul	0.952	0.803	0.747	2.1e-171
TIGR_CMR\|SPO_1942		465	SPO_1942 "3-deoxy-7-phosphohep	0.826	0.787	0.535	1.6e-104
TIGR_CMR\|CJE_0816		446	CJE_0816 "3-deoxy-7-phosphohep	0.826	0.820	0.516	5.6e-100
ASPGD\|ASPL0000049433		482	AN1673 [Emericella nidulans (t	0.557	0.512	0.452	1.2e-87
UNIPROTKB\|A0R033		464	aroG "Phospho-2-dehydro-3-deox	0.810	0.773	0.451	7.6e-80
UNIPROTKB\|O53512		462	aroG "Phospho-2-dehydro-3-deox	0.810	0.777	0.440	7.9e-78
UNIPROTKB\|G4N683		466	MGG_08596 "Phospho-2-dehydro-3	0.823	0.783	0.443	1e-77

TAIR\|locus:2009547 AT1G22410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1738 (616.9 bits), Expect = 5.0e-179, P = 5.0e-179
 Identities = 339/443 (76%), Positives = 369/443 (83%)

Query:     1 MALV-GSTSITPTKSSFV---QPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKA 56
             MAL+ GS +++  KSS +   QP     +++P S    ISAV         S+    T  
Sbjct:     1 MALMNGSMNLSSVKSSMINHRQPNFSSAVSRPTS--FRISAVQTDPKTPAASSASAATTT 58

Query:    57 PEPVLKTS--NVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGXXXX 114
             P  + K    NVG  KW  +SW++KKALQ P+YPD   LE+VL+T++ FPPIVFAG    
Sbjct:    59 PATLTKPVGVNVGKGKWAPESWRTKKALQQPDYPDLAALEAVLETIEAFPPIVFAGEARL 118

Query:   115 XXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGR 174
                      MG+AFLLQGGDCAESFKEFNANNIRDTFRILLQMG VLMFGGQ+PVVKVGR
Sbjct:   119 LEERLGQAAMGEAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQVPVVKVGR 178

Query:   175 MAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLL 234
             MAGQFAKPRSD FEEK+GVKLPSYRGDN+NGDAFD KSR PDPQR+IRAYCQSAATLNLL
Sbjct:   179 MAGQFAKPRSDSFEEKDGVKLPSYRGDNINGDAFDSKSRIPDPQRMIRAYCQSAATLNLL 238

Query:   235 RAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTT 294
             RAFATGGYAAMQRVTQWNLDFTE SEQGDRYRELA+RVDEALGFM AAGLT+DHPIM TT
Sbjct:   239 RAFATGGYAAMQRVTQWNLDFTERSEQGDRYRELANRVDEALGFMHAAGLTLDHPIMQTT 298

Query:   295 EFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLG 354
             +FWTSHECLLLPYEQSLTRLDSTSGLYYDCSAH +WVGERTRQLDGAHVEFL+GVANPLG
Sbjct:   299 DFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLG 358

Query:   355 IKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWV 414
             IKVSDKMDP ELVKLIEILN  NKPGRITIITRMGAENMRVKLPHLIR VRR+GQIVTWV
Sbjct:   359 IKVSDKMDPKELVKLIEILNADNKPGRITIITRMGAENMRVKLPHLIREVRRAGQIVTWV 418

Query:   415 SDPMHGNTIKAPCGLKTRPFDSI 437
             SDPMHGNTIKAPCGLKTRPFD+I
Sbjct:   419 SDPMHGNTIKAPCGLKTRPFDAI 441

GO:0003849 "3-deoxy-7-phosphoheptulonate synthase activity" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR\|locus:2005526 DHS2 "3-deoxy-d-arabino-heptulosonate 7-phosphate synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005525 DHS1 "3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_1942 SPO_1942 "3-deoxy-7-phosphoheptulonate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_0816 CJE_0816 "3-deoxy-7-phosphoheptulonate synthase" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000049433 AN1673 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|A0R033 aroG "Phospho-2-dehydro-3-deoxyheptonate aldolase AroG" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]	Back alignment and assigned GO terms

UNIPROTKB\|O53512 aroG "Phospho-2-dehydro-3-deoxyheptonate aldolase AroG" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N683 MGG_08596 "Phospho-2-dehydro-3-deoxyheptonate aldolase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P80574	AROF_STRCO	2, ., 5, ., 1, ., 5, 4	0.5302	0.8171	0.8044	yes	no
P27608	AROF_TOBAC	2, ., 5, ., 1, ., 5, 4	0.8220	0.9661	0.7896	N/A	no
P37215	AROF_SOLLC	2, ., 5, ., 1, ., 5, 4	0.8004	0.9097	0.7886	N/A	no
P37216	AROG_SOLLC	2, ., 5, ., 1, ., 5, 4	0.7982	0.9887	0.8096	N/A	no
P37822	AROG_SOLTU	2, ., 5, ., 1, ., 5, 4	0.8	0.9074	0.7866	N/A	no
P21357	AROF_SOLTU	2, ., 5, ., 1, ., 5, 4	0.8294	0.9593	0.7899	N/A	no
Q75W16	AROG_ORYSJ	2, ., 5, ., 1, ., 5, 4	0.8459	0.9097	0.7476	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.54	0.991
3rd Layer	2.5.1	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		443
PLN02291		474	PLN02291, PLN02291, phospho-2-dehydro-3-deoxyhepto	0.0
pfam01474		437	pfam01474, DAHP_synth_2, Class-II DAHP synthetase	0.0
TIGR01358		443	TIGR01358, DAHP_synth_II, 3-deoxy-7-phosphoheptulo	0.0
COG3200		445	COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-p	0.0

>gnl\|CDD\|177928 PLN02291, PLN02291, phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

 Score =  870 bits (2250), Expect = 0.0
 Identities = 346/401 (86%), Positives = 368/401 (91%), Gaps = 14/401 (3%)

Query: 38  VHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVL 97
           VHAA+ +K P               +S  GP+KW+ DSW+SKKALQLPEYPD+ ELE VL
Sbjct: 1   VHAAEPSKTPV--------------SSAGGPKKWSPDSWRSKKALQLPEYPDQAELEEVL 46

Query: 98  KTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQM 157
           KTL+ FPP+VFAGEARSLEERLAEAAMG+AFLLQGGDCAESFKEFNANNIRDTFR+LLQM
Sbjct: 47  KTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRVLLQM 106

Query: 158 GVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDP 217
           GVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEK+GVKLPSYRGDN+NGDAFDEKSR PDP
Sbjct: 107 GVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDP 166

Query: 218 QRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALG 277
           QR++RAY QSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALG
Sbjct: 167 QRMVRAYSQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALG 226

Query: 278 FMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQ 337
           FM+A GLT DHPIMTTTEFWTSHECLLLPYEQ+LTR DSTSGLYYDCSAH LWVGERTRQ
Sbjct: 227 FMAACGLTTDHPIMTTTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMLWVGERTRQ 286

Query: 338 LDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKL 397
           LDGAHVEFL+GVANPLGIKVSDKMDP ELVKLIEILNPQNKPGR+TII RMGAE +RVKL
Sbjct: 287 LDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRMGAEKLRVKL 346

Query: 398 PHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIR 438
           PHLIRAVRR+GQIVTWVSDPMHGNTIKAP GLKTRPFD+IR
Sbjct: 347 PHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIR 387

Length = 474

>gnl\|CDD\|216520 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	Back alignment and domain information

>gnl\|CDD\|130425 TIGR01358, DAHP_synth_II, 3-deoxy-7-phosphoheptulonate synthase, class II	Back alignment and domain information

>gnl\|CDD\|225741 COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		443
PLN02291		474	phospho-2-dehydro-3-deoxyheptonate aldolase	100.0
TIGR01358		443	DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthas	100.0
PF01474		439	DAHP_synth_2: Class-II DAHP synthetase family; Int	100.0
COG3200		445	AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (	100.0
PF00793		270	DAHP_synth_1: DAHP synthetase I family; InterPro:	94.55
PRK12755		353	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	93.83
TIGR00034		344	aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	93.82
PRK09261		349	phospho-2-dehydro-3-deoxyheptonate aldolase; Valid	93.52
PRK13398		266	3-deoxy-7-phosphoheptulonate synthase; Provisional	92.85
KOG2599		308	consensus Pyridoxal/pyridoxine/pyridoxamine kinase	91.88
PRK13396		352	3-deoxy-7-phosphoheptulonate synthase; Provisional	89.55
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	87.53
COG2240		281	PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe	87.53
PRK05756		286	pyridoxamine kinase; Validated	86.65
PLN03033		290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	85.55
TIGR00687		286	pyridox_kin pyridoxal kinase. ThiD and related pro	85.39
PRK12822		356	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	81.05
PRK13397		250	3-deoxy-7-phosphoheptulonate synthase; Provisional	80.16
PRK05198		264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	80.07

>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

Probab=100.00  E-value=3.1e-180  Score=1369.64  Aligned_cols=374  Identities=90%  Similarity=1.417  Sum_probs=370.0

Q ss_pred             CCCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHH
Q 013450           69 QKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR  148 (443)
Q Consensus        69 ~~Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~  148 (443)
                      ..|+|+|||++|++|||+|||+++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus        18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir   97 (474)
T PLN02291         18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR   97 (474)
T ss_pred             CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013450          149 DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSA  228 (443)
Q Consensus       149 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~Sa  228 (443)
                      +|+++|+|||+||+|++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus        98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa  177 (474)
T PLN02291         98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA  177 (474)
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccc
Q 013450          229 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYE  308 (443)
Q Consensus       229 aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE  308 (443)
                      +|||+||+|..|||||||++++||++|+++++.+++|++++++|++||+||++||++.+...+++++||||||||||+||
T Consensus       178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE  257 (474)
T PLN02291        178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE  257 (474)
T ss_pred             HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999988556899999999999999999


Q ss_pred             cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 013450          309 QSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM  388 (443)
Q Consensus       309 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm  388 (443)
                      +||||+|+.+|.|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||
T Consensus       258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~Rm  337 (474)
T PLN02291        258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRM  337 (474)
T ss_pred             hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhhc
Q 013450          389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTD  442 (443)
Q Consensus       389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~  442 (443)
                      ||+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||+
T Consensus       338 Ga~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~  391 (474)
T PLN02291        338 GAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIRAEVR  391 (474)
T ss_pred             chHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999996

>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II	Back alignment and domain information

>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2	Back alignment and domain information

>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate	Back alignment and domain information

>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	Back alignment and domain information

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]	Back alignment and domain information

>PRK05756 pyridoxamine kinase; Validated	Back alignment and domain information

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>TIGR00687 pyridox_kin pyridoxal kinase	Back alignment and domain information

>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		443
2w19_A		472	Non-Covalent Complex Between Dahp Synthase And Chor		1e-85
3rzi_A		462	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-85
3kgf_A		464	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-85
2b7o_A		464	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-76

>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate Mutase From Mycobacterium Tuberculosis Length = 472

Back alignment and structure

Iteration: 1

Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 160/368 (43%), Positives = 223/368 (60%), Gaps = 9/368 (2%) Query: 73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132 +D+ +K A Q P +P + L ++ L+ PP+ G+AFLLQG Sbjct: 36 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 94 Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 GDCAE+F + +IR R LLQM VVL +G MPVVKV R+AGQ+AKPRS + + Sbjct: 95 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDA 151 Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252 + L SYRGD +NG A D +R DP RL+RAY ++A +NL+RA + G A++ V WN Sbjct: 152 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 211 Query: 253 LDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT 312 +F S G RY LA +D L FMSA G+ + + T E + SHE L+L YE+++ Sbjct: 212 REFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLDYERAML 269 Query: 313 RL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKL 369 RL D +D SAH +W+GERTRQ+DGAH+ F + +ANP+G+K+ M P V+ Sbjct: 270 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEY 329 Query: 370 IEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGL 429 +E L+P NKPGR+T+++RMG +R LP ++ V+ +G V W DPMHGNT ++ G Sbjct: 330 VERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGF 389 Query: 430 KTRPFDSI 437 KTR FD I Sbjct: 390 KTRHFDRI 397

PyMOL of 2w19

>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Cocrystallized And Complexed With Phenylalanine And Tryptophan Length = 462

Back alignment and structure

>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Complexed With Phenylalanine And Tryptophan Length = 464

Back alignment and structure

>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Length = 464

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		443
3rzi_A		462	Probable 3-deoxy-D-arabino-heptulosonate 7-phosph	1e-156

>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A* Length = 462	Back alignment and structure

 Score =  450 bits (1158), Expect = e-156
 Identities = 166/375 (44%), Positives = 231/375 (61%), Gaps = 9/375 (2%)

Query: 67  GPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGK 126
              +  +D+  +K A Q P +P  + L  +   L+  PP+    E   L+E+LA+ A G+
Sbjct: 20  TDLRTRLDAALAKPAAQQPTWPADQALA-MRTVLESVPPVTVPSEIVRLQEQLAQVAKGE 78

Query: 127 AFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDP 186
           AFLLQGGDCAE+F +    +IR   R LLQM VVL +G  MPVVKV R+AGQ+AKPRS  
Sbjct: 79  AFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSAD 138

Query: 187 FEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQ 246
               + + L SYRGD +NG A D  +R  DP RL+RAY  ++A +NL+RA  + G A++ 
Sbjct: 139 I---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLH 195

Query: 247 RVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLP 306
            V  WN +F   S  G RY  LA  +D  L FMSA G+   +  + T E + SHE L+L 
Sbjct: 196 LVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLD 253

Query: 307 YEQSLTRL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDP 363
           YE+++ RL   D      +D SAH +W+GERTRQ+DGAH+ F + +ANP+G+K+   M P
Sbjct: 254 YERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTP 313

Query: 364 NELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTI 423
              V+ +E L+P NKPGR+T+++RMG   +R  LP ++  V+ +G  V W  DPMHGNT 
Sbjct: 314 ELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTH 373

Query: 424 KAPCGLKTRPFDSIR 438
           ++  G KTR FD I 
Sbjct: 374 ESSTGFKTRHFDRIV 388

PyMOL of 3rzi

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		443
3rzi_A		462	Probable 3-deoxy-D-arabino-heptulosonate 7-phosph	100.0
1n8f_A		350	DAHP synthetase; (beta/alpha)8 barrel, metal bindi	96.81
3tqk_A		346	Phospho-2-dehydro-3-deoxyheptonate aldolase; trans	96.75
1of8_A		370	Phospho-2-dehydro-3-deoxyheptonate aldolase, tyros	96.4
3nvt_A		385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	90.35
2nwr_A		267	2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD	87.66
3sz8_A		285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	85.15
1zco_A		262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	83.15

>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*	Back alignment and structure

Probab=100.00  E-value=1.9e-177  Score=1344.61  Aligned_cols=364  Identities=45%  Similarity=0.792  Sum_probs=357.8

Q ss_pred             ccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHHHHH
Q 013450           73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFR  152 (443)
Q Consensus        73 p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k~~  152 (443)
                      ++|||++|++|||+|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|++|++++|++|++
T Consensus        26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~  104 (462)
T 3rzi_A           26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR  104 (462)
T ss_dssp             HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred             ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence            4799999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 013450          153 ILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLN  232 (443)
Q Consensus       153 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~SaaTLn  232 (443)
                      +|+|||+||+||+++|||||||||||||||||+++|   |++||||||||||+++||+++|+|||+|||+||+||++|||
T Consensus       105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN  181 (462)
T 3rzi_A          105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN  181 (462)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccc
Q 013450          233 LLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT  312 (443)
Q Consensus       233 ~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~alt  312 (443)
                      +||+|++|||||||++|+||++|+++|+.+++|++++++|++||+||++||++.+  .+.+++||||||||||+||+|||
T Consensus       182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt  259 (462)
T 3rzi_A          182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML  259 (462)
T ss_dssp             HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred             HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence            9999999999999999999999999999999999999999999999999999987  67899999999999999999999


Q ss_pred             ccc---CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 013450          313 RLD---STSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG  389 (443)
Q Consensus       313 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG  389 (443)
                      |.|   +.+|.|||||||||||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+|||
T Consensus       260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~RmG  339 (462)
T 3rzi_A          260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG  339 (462)
T ss_dssp             EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC
T ss_pred             cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEccC
Confidence            999   88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhhc
Q 013450          390 AENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTD  442 (443)
Q Consensus       390 a~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~  442 (443)
                      |+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||+
T Consensus       340 a~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~fd~Il~Ev~  392 (462)
T 3rzi_A          340 NHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQ  392 (462)
T ss_dssp             TTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSCEEEBHHHHHHHHH
T ss_pred             CchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCCccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999996

PyMOL of 3rzi

>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*	Back alignment and structure

>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}	Back alignment and structure

>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*	Back alignment and structure

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*	Back alignment and structure

>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...	Back alignment and structure

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*	Back alignment and structure

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		443
d2b7oa1		462	c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,	0.0

>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} Length = 462	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class-II DAHP synthetase
domain: Probable DAHP synthetase AroG, phenylalanine-repressible
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  537 bits (1386), Expect = 0.0
 Identities = 171/393 (43%), Positives = 236/393 (60%), Gaps = 11/393 (2%)

Query: 50  VKTTTKAPEPVLKTSNVGPQ--KWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIV 107
           +  T   P   L +    P   +  +D+  +K A Q P +P  + L  +   L+  PP+ 
Sbjct: 1   MNWTVDIPIDQLPSLPPLPTDLRTRLDAALAKPAAQQPTWPADQALA-MRTVLESVPPVT 59

Query: 108 FAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQM 167
              E   L+E+LA+ A G+AFLLQGGDCAE+F +    +IR   R LLQM VVL +G  M
Sbjct: 60  VPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASM 119

Query: 168 PVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQS 227
           PVVKV R+AGQ+AKPRS      + + L SYRGD +NG A D  +R  DP RL+RAY  +
Sbjct: 120 PVVKVARIAGQYAKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANA 176

Query: 228 AATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVD 287
           +A +NL+RA  + G A++  V  WN +F   S  G RY  LA  +D  L FMSA G  V 
Sbjct: 177 SAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACG--VA 234

Query: 288 HPIMTTTEFWTSHECLLLPYEQSLTRL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVE 344
              + T E + SHE L+L YE+++ RL   D      +D SAH +W+GERTRQ+DGAH+ 
Sbjct: 235 DRNLQTAEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIA 294

Query: 345 FLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAV 404
           F + +ANP+G+K+   M P   V+ +E L+P NKPGR+T+++RMG   +R  LP ++  V
Sbjct: 295 FAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKV 354

Query: 405 RRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSI 437
           + +G  V W  DPMHGNT ++  G KTR FD I
Sbjct: 355 QATGHQVIWQCDPMHGNTHESSTGFKTRHFDRI 387

PyMOL of d2b7oa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		443
d2b7oa1		462	Probable DAHP synthetase AroG, phenylalanine-repre	100.0
d2a21a1		263	3-deoxy-D-manno-octulosonate 8-phosphate synthase	89.62

>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class-II DAHP synthetase
domain: Probable DAHP synthetase AroG, phenylalanine-repressible
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.9e-174  Score=1322.85  Aligned_cols=366  Identities=45%  Similarity=0.793  Sum_probs=358.4

Q ss_pred             CCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHHH
Q 013450           71 WTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDT  150 (443)
Q Consensus        71 Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k  150 (443)
                      |..++|+++||+|||.|||+.+| +|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus        24 ~~~~~~~~~Pa~QqP~ypd~~~l-~v~~~L~~~PPLV~a~Ei~~Lk~~La~va~G~AFlLQgGDCAEsF~~~~~~~Ir~k  102 (462)
T d2b7oa1          24 TRLDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGN  102 (462)
T ss_dssp             HHHHHHHTSCCTTCCCCCHHHHH-HHHHHHTSSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCSHHHHHHH
T ss_pred             hhhhhhhcCccccCCCCCCHHHH-HHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccccChhhcChHHHHHH
Confidence            78899999999999999999998 59999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 013450          151 FRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAAT  230 (443)
Q Consensus       151 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~SaaT  230 (443)
                      +++|+|||.||+|++++|||||||||||||||||+++   ||++||||||||||+.+||+++|+|||+|||+||+||++|
T Consensus       103 ~k~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRS~~~---dgv~LpsYRGDiVN~~~f~~~aR~PDP~Rll~aY~~Saat  179 (462)
T d2b7oa1         103 VRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAA  179 (462)
T ss_dssp             HHHHHHHHHHHHHHHTSCEEEEEECSSCCCCCCSCSB---CTTSSBCCCCTTTSCSSSSHHHHSCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCEEEeccchhcccCCccCcc---cccccccccCCcccCCCCChhccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999986   6899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccc
Q 013450          231 LNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQS  310 (443)
Q Consensus       231 Ln~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~a  310 (443)
                      ||+||+|++||||||+++++||++|+++++.+++|++++++|+++|+||++||++..  .+.+++||||||||||+||+|
T Consensus       180 LNllRa~~~gg~AdL~~v~~Wn~~f~~~s~~~~~y~~la~~I~~al~Fm~a~G~~~~--~l~~~~fyTSHEaLlL~YE~A  257 (462)
T d2b7oa1         180 MNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERA  257 (462)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHHTTCCGG--GTCCCCEEEEEECCCHHHHHH
T ss_pred             HHHHHHhhccCccchhhhhhcccccccCCchhHHHHHHHHHHHHHhhhHhhcCCCcc--cccccccccchHhhccchhhh
Confidence            999999999999999999999999999999999999999999999999999999865  578999999999999999999


Q ss_pred             cccc---cCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 013450          311 LTRL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR  387 (443)
Q Consensus       311 ltR~---d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R  387 (443)
                      |||.   |+.+++|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+|
T Consensus       258 ltR~~~~d~~~~~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGiKvGP~~~pd~l~~L~~~LNP~nepGRltLI~R  337 (462)
T d2b7oa1         258 MLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSR  337 (462)
T ss_dssp             TEEECCSSSSSCCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEEC
T ss_pred             heecccccCCCCceeccccceeeecccccccccchhHHHHhccCcceeeeCCCCCHHHHHHHHHHhCcccccceEEEEeh
Confidence            9996   5556889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhhc
Q 013450          388 MGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTD  442 (443)
Q Consensus       388 mGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~  442 (443)
                      |||+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||+
T Consensus       338 mGa~ki~~~LP~LI~aV~~~g~~VvW~cDPMHGNT~~s~~G~KTR~f~~Il~Ev~  392 (462)
T d2b7oa1         338 MGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQ  392 (462)
T ss_dssp             CCTTTHHHHHHHHHHHHHTTTCCCEEEECCSTTSEEECTTSCEEECHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHHhcCCceEEEecCCcCCceeCCCCcccCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999996

PyMOL of d2b7oa1

>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure